Citrus Sinensis ID: 010532
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T0A0 | 666 | Long chain acyl-CoA synth | yes | no | 0.976 | 0.744 | 0.739 | 0.0 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.982 | 0.749 | 0.711 | 0.0 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.984 | 0.751 | 0.686 | 0.0 | |
| Q9XIA9 | 665 | Long chain acyl-CoA synth | no | no | 0.972 | 0.742 | 0.505 | 1e-154 | |
| O22898 | 660 | Long chain acyl-CoA synth | no | no | 0.974 | 0.75 | 0.478 | 1e-144 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.897 | 0.651 | 0.386 | 3e-86 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.864 | 0.658 | 0.390 | 1e-83 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.897 | 0.650 | 0.393 | 4e-83 | |
| Q1ZXQ4 | 673 | Fatty acyl-CoA synthetase | no | no | 0.883 | 0.667 | 0.348 | 1e-76 | |
| O88813 | 683 | Long-chain-fatty-acid--Co | yes | no | 0.874 | 0.650 | 0.367 | 8e-73 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/496 (73%), Positives = 431/496 (86%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY+ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN MLG
Sbjct: 6 KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLG 65
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
+REIVDGK GKYVW+TY+EVYD+V+K+ N++R+ GV++ KCGIYG N PEWII MEACN
Sbjct: 66 RREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGA AVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF V
Sbjct: 126 AHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV 185
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 186 SREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
E+IVT IAGV LL+S NE LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRGDVK
Sbjct: 246 ESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVK 305
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+ED+ ELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF +KKG H
Sbjct: 306 LLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSH 365
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
VEASP+ DK+VF KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE+CA
Sbjct: 366 VEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA 425
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+ST RGE+C++G T+FSGYYKR
Sbjct: 426 GTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKR 485
Query: 485 EDLTKEVMVDGWFHTG 500
EDLTKEV++DGW HTG
Sbjct: 486 EDLTKEVLIDGWLHTG 501
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/499 (71%), Positives = 428/499 (85%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
S +++ EVE AKEA+ G PS+GPVYRS FA++GFP PI G++SCWD+FR AVE+ PNNR
Sbjct: 3 SQKRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNR 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REI +GKAGKYVWKTYKEVYD+VIK+ N++R+CG++E KCGIYG+NC EWII ME
Sbjct: 63 MLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII H+ VSIAFVEEKKIPE+ KT P +T+++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
VKPEQ+EE EK GL ++SWDEFL+LGE KQ++LP+KK +DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT GV L +VN L+ +DVY+SYLPLAH+FDRAIEE I G +IGFWRG
Sbjct: 243 ISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKP+IFCAVPRVLDR+Y+GL QK+S GG KK +F++A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HV ASP DK+VF+KVKQ GG VR+ILSGAAPL H+E+FLRVVAC +VLQGYGLTE
Sbjct: 363 QSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTF + P+E+ M+GTVGPPVPNVD+ LESVPEM YDAL STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTG 500
YKREDLTKEV +DGW HTG
Sbjct: 483 YKREDLTKEVFIDGWLHTG 501
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/501 (68%), Positives = 426/501 (85%), Gaps = 1/501 (0%)
Query: 1 MSNMKYVVEVEKAKEA-SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPN 59
M+ +Y+VEVEK K+ GG PS+GPVYRS++AKDGFP P + S WD+FR++VE++PN
Sbjct: 1 MATGRYIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPN 60
Query: 60 NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
N MLG+REIVDGKAGKYVW+TYKEV+++VIK+ N+IRT GV + KCGIYG N PEWII
Sbjct: 61 NPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIIS 120
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179
MEACNA GL+CVPLYDTLGAGA+EFIICH+ VS+AF EE KI E+LKT PK+T++LK IV
Sbjct: 121 MEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIV 180
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
SF +V QR E E++ L +YSWD+FL+LGE K ++LP K+++D+CTIMYTSGTTGDPKG
Sbjct: 181 SFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKG 240
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299
V+++NE+I+ + GVK LL++++E+LTS+DVY+SYLPLAHIFDR IEE+ I A+IGFW
Sbjct: 241 VLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFW 300
Query: 300 RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359
RGDVK+L+EDI LKPT+FCAVPRVL+RIY+GL QK+S GG +KK LFN A+ YK N++
Sbjct: 301 RGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNME 360
Query: 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
KG H +ASPIADKIVF KVK+ GG VRLILSGAAPL H+E+FLRVVACAHVLQGYGL
Sbjct: 361 KGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGL 420
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
TE+C GTFVS+PNE+SM+GTVGPPVPNVD+ LESVPEM YDAL+S PRGE+C++G T+FS
Sbjct: 421 TESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFS 480
Query: 480 GYYKREDLTKEVMVDGWFHTG 500
GYYKREDLT+EV +DGW HTG
Sbjct: 481 GYYKREDLTQEVFIDGWLHTG 501
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 250/495 (50%), Positives = 354/495 (71%), Gaps = 1/495 (0%)
Query: 7 VVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQR 66
V+ VE+ + A+ PS GPVYR +AKDG ++S W F AV++ PN +MLGQR
Sbjct: 8 VLLVEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQR 67
Query: 67 EIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNAL 126
D K G Y W TYKE +D I++ +AIR+ GV+ CGIYG NCPEWII MEAC +
Sbjct: 68 VTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQ 127
Query: 127 GLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
G+ VPLYD+LG AVEFII H+ VS+ FV+EK + +L + +LKTIVSF +V
Sbjct: 128 GITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSS 187
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
Q+EE + ++++SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++N
Sbjct: 188 TQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAA 247
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
I + + +LE + + DV+ SYLPLAH +D+ +E F+S G+++G+WRGD++ L
Sbjct: 248 ISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYL 307
Query: 307 LEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVE 366
++D+ LKPT+FC VPRV D++Y+G+ QKIS+ GL++K LF+ AY+YK N++KG E
Sbjct: 308 MDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEE 367
Query: 367 ASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT 426
ASP D+++FDK+K++ GGR ++LSGAAPL HVE FLR++ +++ QGYGLTE+C G+
Sbjct: 368 ASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGS 427
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-TPRGEVCVKGSTVFSGYYKRE 485
F +L SM+GTVG P+P V+ L SVPEM YDA S+ PRGE+C++G+++FSGY+KR+
Sbjct: 428 FTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQ 487
Query: 486 DLTKEVMVDGWFHTG 500
DLT +V++DGWFHTG
Sbjct: 488 DLTDQVLIDGWFHTG 502
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 510 bits (1314), Expect = e-144, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 335/495 (67%)
Query: 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQ 65
+ +VE+ + G+PS+GPVYR+L ++ GFP + + WD+F +VE+ P+N MLG
Sbjct: 4 FAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNMLGW 63
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R IVD K G Y+WKTYKEVY+ V+++ +A+R G E + GIYGVNCP+WII MEAC A
Sbjct: 64 RRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEACAA 123
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
L CVPLYDTLG+GAV++I+ H+ + FV++ KI +L+ K + LK IVSF+ V
Sbjct: 124 HTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTNVS 183
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
E + + G+ YSW +FL +G K D K +ICTIMYTSGT+GDPKGV+++++
Sbjct: 184 DELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLTHQ 243
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
+ TF+ G+ ++ +K+T +DVY+S+LPLAHI DR EE F GA++G++ G++ +
Sbjct: 244 AVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNLNV 303
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
L +DI ELKPT VPRV +RI+ G+ + + ++ +FN Y +K L +G+ H
Sbjct: 304 LRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYSHS 363
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
+ASP+AD I F K++ GGR+RL++SG APL+P +E FLRV C V+QGYGLTET G
Sbjct: 364 KASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETLGG 423
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485
T + P+EM M+GTVG P ++ LE V EM YD L P GE+C++G +FSGYYK
Sbjct: 424 TALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYKNP 483
Query: 486 DLTKEVMVDGWFHTG 500
+LT+EVM DGWFHTG
Sbjct: 484 ELTEEVMKDGWFHTG 498
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 319 bits (818), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/468 (38%), Positives = 263/468 (56%), Gaps = 12/468 (2%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AVE N+ LG R DG G+Y W TY E + + + GV
Sbjct: 81 PEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGV 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
+ G+Y +N PEW++ AC A VPLYDTLG AV+F++ H+ + F +
Sbjct: 141 NQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQT 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ +L +F ++ IV G+ + S+ + L G + K
Sbjct: 201 L-NILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPK 259
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
DI TI YTSGTTG PKGV++++ N++ +AG SV + DVY+SYLPLAHI
Sbjct: 260 PEDIATICYTSGTTGTPKGVVLTHGNLIANVAG-----SSVEAEFFPSDVYISYLPLAHI 314
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++RA + + + G A+GF++GDV L++D L+PTIFC+VPR+ +RIY G+ + S G
Sbjct: 315 YERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSG 374
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
++KK LF IAY+ K + G S DK+VF+K+K+ GGRVR + SGA+PL+P
Sbjct: 375 VVKKRLFEIAYNSKKQAIINGRT---PSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPD 431
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460
V FLR+ V +GYG+TET ++ + ++ G VG P P +V L VPEM Y
Sbjct: 432 VMDFLRICFGCSVREGYGMTETSC-VISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYT 490
Query: 461 ALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGCPHLFL 506
+ PRGE+CV+G +F GYYK E+ T+E++ DGW HTG L+L
Sbjct: 491 SDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWL 538
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/463 (39%), Positives = 268/463 (57%), Gaps = 24/463 (5%)
Query: 45 SCWDVFRMAVERNPNNRMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
+ +DV+R + ++ ++ LG RE++ DGK G Y W +YK+ + +A+ G+ +
Sbjct: 55 TLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKG 112
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
+ GI+ +N PEW++ A L V LY TLGA A+E+++ HS +S+ E K + +
Sbjct: 113 DRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEK 172
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY----GLAVYSWDEFLQLGENKQFDLPVK 219
+L + P TT +KTIVS+ P + ++K+ + +Y +F +LGE V
Sbjct: 173 IL-SMPGTT--IKTIVSYD---PLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVP 226
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D+CT++YTSG+TG+PKGVM+++ N+V+ +AG V EDV++SYLPLAH
Sbjct: 227 SPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGV----IPEDVHMSYLPLAH 282
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
F+RA+ + G IGF+ G + L DI L+PT C PRV R++ L +++
Sbjct: 283 SFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNND 342
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
LKK LFN + K L+ G +PI DK+VF K K GGRV+ ILSG+APL P
Sbjct: 343 SWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDP 398
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
+ FLR C V+ GYGL+E G V+ P E + +G VGPP+ ++ L VPEM Y
Sbjct: 399 KLAEFLRACFCCPVVSGYGLSENVGGASVAYP-EDNNVGHVGPPLSACEMKLIDVPEMNY 457
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
+ PRGEVC++G VF GY+K + TKE + DGWFHTG
Sbjct: 458 FSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTG 500
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 261/468 (55%), Gaps = 12/468 (2%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AV + + LG R VDG G Y W TY E + + + G+
Sbjct: 81 PDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGI 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
GIY +N PEW+I AC++ VPLYDTLG AV+FI+ H+ V F +
Sbjct: 141 PMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAET 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ +L + +V ++ G+ V S+ L G + K
Sbjct: 201 LNSLLSCLSEMPSVRLVVVVGGLIE-SLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ TI YTSGTTG PKGV++++ N++ +AG S + K S DVY+SYLPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAGS-----SFSVKFFSSDVYISYLPLAHI 314
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++RA + + + G A+GF++GD LL+D+ L+PT+F +VPR+ +RIY+G+ + + G
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
LK+ LFN AY+ K L G ASPI D++VF+K+K GGRVR + SGA+PL+P
Sbjct: 375 GLKERLFNAAYNAKKQALLNGK---SASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY- 459
V FL+V V +GYG+TET + ++ G VG P P +V L VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETSC-VISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYT 490
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506
A PRGE+CV+G +F+GYYK E TKEV+ DGW HTG L+L
Sbjct: 491 SADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWL 538
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/459 (34%), Positives = 259/459 (56%), Gaps = 10/459 (2%)
Query: 45 SCWDVFRMAVERNPNNRMLGQREI-VDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
+ +D + ++ + G+R+ +G GK+ W +Y + + + G++ +
Sbjct: 64 TLYDSLVKSCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPK 123
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
K GI+ N EW+I A V Y+TLG ++ ++ H+ + +AF + + +
Sbjct: 124 SKVGIFSKNRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQK 183
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPVKKK 221
L K + LKTI+ F + E ++ G+ +Y++DE ++ G+ N +
Sbjct: 184 TLD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTP 242
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+ + TIMYTSGTTG PKGVM++++N+ + + V + K+ DV+ SYLP AH+
Sbjct: 243 DTLSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFI-----KVYDTDVHYSYLPYAHVL 297
Query: 282 DRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
+R + GAAIG + GD+ +L ++ L PT+F VPRV +RI + + ++IS
Sbjct: 298 ERVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPA 357
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
L +TLFN AY+ K+ +++ G K + D + F K+KQ+ GG+VR+ILSG+APL+
Sbjct: 358 LLRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDT 417
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDA 461
E FLRVV C VLQGYG +E C G ++ S +GT+GPP + ++ L VPE+ YD+
Sbjct: 418 EVFLRVVMCCCVLQGYGASEGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDS 476
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GEVC++G ++ SGYYK E+ T+E DGWFHTG
Sbjct: 477 NGEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTG 515
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 170/463 (36%), Positives = 261/463 (56%), Gaps = 19/463 (4%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE-- 101
++ ++VF+ + + N LG R+ Y W +YK+V D + + + G +
Sbjct: 75 KTLYEVFQRGLAVSDNGPCLGYRK----PNQPYKWISYKQVSDRAEYLGSCLLHKGYKPS 130
Query: 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161
+ GI+ N PEW+I AC + VPLYDTLGA A+ ++I + +S+ + +
Sbjct: 131 QDQFIGIFAQNRPEWVISELACYTYSMVAVPLYDTLGAEAIIYVINRADISVVICDTPQK 190
Query: 162 PEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG-ENKQFDLPV 218
ML T LKT++ + + EK G+ + S + LG EN + +P
Sbjct: 191 ATMLIENVEKDLTPGLKTVILMDPFDDDLMKRGEKCGIEMLSLHDAENLGKENFKKPMP- 249
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
D+ I +TSGTTGDPKG M++++NIV+ +A LE + + T EDV +SYLPLA
Sbjct: 250 PNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNMAAFLKFLEPIFQP-TPEDVTISYLPLA 308
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
H+F+R ++ V S G IGF++GD++LL +D+ LKPT+F VPR+L+R+Y + + +
Sbjct: 309 HMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKT 368
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
LKK L N+A KF+ ++ G + + + DK+VF K++ S GG+VRL+++GAAP++
Sbjct: 369 P--LKKFLLNLAIISKFNEVRNG--IIRRNSLWDKLVFSKIQSSLGGKVRLMITGAAPIS 424
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
V TF R V + YG TE AG ++ P + + G VG PV V LE V +M
Sbjct: 425 TPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDWTA-GHVGTPVSCNFVKLEDVADMN 483
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
Y S GE+C+KG+ VF GY K + T+EV+ DGW HTG
Sbjct: 484 Y--FSVNNEGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTG 524
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| 170676820 | 665 | long-chain acyl-CoA synthetase 4 [Ricinu | 0.976 | 0.745 | 0.800 | 0.0 | |
| 225426350 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.984 | 0.755 | 0.8 | 0.0 | |
| 83320523 | 656 | ACS1 [Ricinus communis] | 0.970 | 0.751 | 0.801 | 0.0 | |
| 147810382 | 654 | hypothetical protein VITISV_035299 [Viti | 0.966 | 0.750 | 0.812 | 0.0 | |
| 224075096 | 662 | predicted protein [Populus trichocarpa] | 0.984 | 0.755 | 0.79 | 0.0 | |
| 74147576 | 662 | ACS-like protein [Gossypium hirsutum] | 0.984 | 0.755 | 0.784 | 0.0 | |
| 224053783 | 662 | predicted protein [Populus trichocarpa] | 0.984 | 0.755 | 0.784 | 0.0 | |
| 356497309 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.984 | 0.755 | 0.774 | 0.0 | |
| 74147588 | 663 | ACS-like protein [Gossypium hirsutum] | 0.974 | 0.746 | 0.765 | 0.0 | |
| 449464058 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.984 | 0.757 | 0.766 | 0.0 |
| >gi|170676820|gb|ACB30545.1| long-chain acyl-CoA synthetase 4 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/496 (80%), Positives = 450/496 (90%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY++EVEKAKEA G+PS+GPVYRSLFAKDGFP PIPG++SCWDVFRM+VE+ PNN MLG
Sbjct: 8 KYLIEVEKAKEAKDGKPSVGPVYRSLFAKDGFPPPIPGLDSCWDVFRMSVEKYPNNPMLG 67
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
RE V+GKAGKYVW+TYK+VYDLVIKV NAIR+CGVE KCGIYG N EWI+ MEACN
Sbjct: 68 HREFVNGKAGKYVWQTYKQVYDLVIKVGNAIRSCGVEPGEKCGIYGANSAEWIMSMEACN 127
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGAGAVE+IICH+ VSIAFVEEKKIPE+LKTFP +++KTIVSF +
Sbjct: 128 AHGLYCVPLYDTLGAGAVEYIICHAEVSIAFVEEKKIPELLKTFPSAAQYIKTIVSFGNI 187
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQREE+EK+GL YSW++FL+LGENKQ+DLP KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 188 AREQREEMEKFGLVAYSWEDFLKLGENKQYDLPEKKKSDICTIMYTSGTTGDPKGVMISN 247
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
++IVT IAGV+ LLESVNE+LTSEDVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVK
Sbjct: 248 DSIVTIIAGVRRLLESVNEQLTSEDVYLSYLPLAHIFDRVIEELFISHGASIGFWRGDVK 307
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+EDIGELKPTIFCAVPRVLDRI+SGL QKISSGG LK LFN+AYSYK +KKG H
Sbjct: 308 LLIEDIGELKPTIFCAVPRVLDRIHSGLTQKISSGGFLKNKLFNLAYSYKLSCMKKGLAH 367
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
EASP++DK+VFDKVKQ GG+VRLILSGAAPL HVE FLRVV+CAHVLQGYGLTETCA
Sbjct: 368 DEASPLSDKLVFDKVKQGLGGKVRLILSGAAPLAIHVEAFLRVVSCAHVLQGYGLTETCA 427
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLPNEM+M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+CV+GSTVF+GYYKR
Sbjct: 428 GTFVSLPNEMAMLGTVGPPVPNVDVCLESVPEMNYDALSSTPRGEICVRGSTVFAGYYKR 487
Query: 485 EDLTKEVMVDGWFHTG 500
EDLTKEV++DGWFHTG
Sbjct: 488 EDLTKEVLIDGWFHTG 503
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426350|ref|XP_002270385.1| PREDICTED: long chain acyl-CoA synthetase 4 [Vitis vinifera] gi|297742330|emb|CBI34479.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/500 (80%), Positives = 452/500 (90%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ ++++E+EKAKEA GRPSIGPVYRS FA+DGFP PI GMESCWDVFR+AVE+ P N
Sbjct: 1 MAQKRFIIEMEKAKEAKDGRPSIGPVYRSSFARDGFPKPIEGMESCWDVFRLAVEKYPGN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLGQREIV+GKAGKYVW TYKEVYD V+KV N+IR+CGV E G+CGIYG N EWI+ M
Sbjct: 61 RMLGQREIVNGKAGKYVWLTYKEVYDKVMKVGNSIRSCGVNEGGRCGIYGANSAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICHS +SI FVEEKKIPE+LKTFP TTE+LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHSELSIVFVEEKKIPEVLKTFPNTTEYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQREE+EK+GLA+Y W+EFLQLG++K+FDLP+ KKNDICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQREEVEKFGLAIYYWEEFLQLGDDKKFDLPLTKKNDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SNE+IVT IAGVK LL+SVNE+L +DV++SYLPLAHIFDR IEE+FIS+GA+IGFWR
Sbjct: 241 MISNESIVTLIAGVKRLLQSVNEELNEKDVFISYLPLAHIFDRVIEELFISHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKPTIFCAVPRVLDRIYSGL QKIS+GGLL+ TLFNIAY YK +NL K
Sbjct: 301 GDVKLLVEDIGELKPTIFCAVPRVLDRIYSGLKQKISAGGLLRNTLFNIAYKYKQYNLWK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G K +EA+PI DKIVF KVKQ GG VRLILSGAAPL+ HVE +LRVV CAHVLQGYGLT
Sbjct: 361 GVKTLEAAPICDKIVFGKVKQGLGGNVRLILSGAAPLSTHVEAYLRVVTCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+SM+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+FSG
Sbjct: 421 ETCAGTFVSLPNEISMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTG 500
YYKREDLTKEV+VDGWFHTG
Sbjct: 481 YYKREDLTKEVLVDGWFHTG 500
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83320523|gb|ABC02880.1| ACS1 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/493 (80%), Positives = 447/493 (90%)
Query: 8 VEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQRE 67
+EVEKAKEA G+PS+GPVYRSLFAKDGFP PIPG++SCWDVFRM+VE+ PNN MLG RE
Sbjct: 2 IEVEKAKEAKDGKPSVGPVYRSLFAKDGFPPPIPGLDSCWDVFRMSVEKYPNNPMLGHRE 61
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
V+GKAGKYVW+TYK+VYDLVIKV NAIR+CGVE KCGIYG N EWI+ MEACNA G
Sbjct: 62 FVNGKAGKYVWQTYKQVYDLVIKVGNAIRSCGVEPGEKCGIYGANSAEWIMSMEACNAHG 121
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
L+CVPLYDTLGAGAVE+IICH+ VSIAFVEEKKIPE+LKTFP +++KTIVSF + E
Sbjct: 122 LYCVPLYDTLGAGAVEYIICHAEVSIAFVEEKKIPELLKTFPSAAQYIKTIVSFGNIARE 181
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
QREE+EK+GL YSW++FL+LGENKQ+DLP KKK+DICTIMYTSGTTGDPKGVM+SN++I
Sbjct: 182 QREEMEKFGLVAYSWEDFLKLGENKQYDLPEKKKSDICTIMYTSGTTGDPKGVMISNDSI 241
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLL 307
VT IAGV+ LLESVNE+LTSEDVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKLL+
Sbjct: 242 VTIIAGVRRLLESVNEQLTSEDVYLSYLPLAHIFDRVIEELFISHGASIGFWRGDVKLLI 301
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
EDIGELKPTIFCAVPRVLDRI+SGL QKISSGG LK LFN+AYSYK +KKG H EA
Sbjct: 302 EDIGELKPTIFCAVPRVLDRIHSGLTQKISSGGFLKNKLFNLAYSYKLSCMKKGLAHDEA 361
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427
SP++DK+VFDKVKQ GG+VRLILSGAAPL HVE FLRVV+CAHVLQGYGLTETCAGTF
Sbjct: 362 SPLSDKLVFDKVKQGLGGKVRLILSGAAPLAIHVEAFLRVVSCAHVLQGYGLTETCAGTF 421
Query: 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
VSLPNEM+M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+CV+GSTVF+GYYKREDL
Sbjct: 422 VSLPNEMAMLGTVGPPVPNVDVCLESVPEMNYDALSSTPRGEICVRGSTVFAGYYKREDL 481
Query: 488 TKEVMVDGWFHTG 500
TKEV++DGWFHTG
Sbjct: 482 TKEVLIDGWFHTG 494
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810382|emb|CAN67631.1| hypothetical protein VITISV_035299 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/491 (81%), Positives = 446/491 (90%)
Query: 10 VEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV 69
+EKAKEA GRPSIGPVYRS FA+DGFP PI GMESCWDVFR+AVE+ P NRMLGQREIV
Sbjct: 1 MEKAKEAKDGRPSIGPVYRSSFARDGFPKPIEGMESCWDVFRLAVEKYPGNRMLGQREIV 60
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129
+GKAGKYVW TYKEVYD V+KV N+IR+CGV E G+CGIYG N EWI+ MEACNA GL+
Sbjct: 61 NGKAGKYVWLTYKEVYDKVMKVGNSIRSCGVNEGGRCGIYGANSAEWIMSMEACNAHGLY 120
Query: 130 CVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR 189
CVPLYDTLGAGAVEFIICHS +SI FVEEKKIPE+LKTFP TTE+LKTIVSF KV PEQR
Sbjct: 121 CVPLYDTLGAGAVEFIICHSELSIVFVEEKKIPEVLKTFPNTTEYLKTIVSFGKVTPEQR 180
Query: 190 EEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249
EE+EK+GLA+YSW+EFLQLG++K+FDLP+ KKNDICTIMYTSGTTGDPKGVM+SNE+IVT
Sbjct: 181 EEVEKFGLAIYSWEEFLQLGDDKKFDLPLTKKNDICTIMYTSGTTGDPKGVMISNESIVT 240
Query: 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLED 309
IAGVK LL+SVNE+L +DV++SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKLL+ED
Sbjct: 241 LIAGVKRLLQSVNEELNEKDVFISYLPLAHIFDRVIEELFISHGASIGFWRGDVKLLVED 300
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
IGELKPTIFCAVPRVLDRIYSGL QKIS+GGLL+ TLFNIAY YK +NL KG K +EA+P
Sbjct: 301 IGELKPTIFCAVPRVLDRIYSGLKQKISAGGLLRNTLFNIAYKYKQYNLWKGVKTLEAAP 360
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429
I DKIVF KVKQ GG VRLILSGAAPL+ HVE +LRVV CAHVLQGYGLTETCAGTFVS
Sbjct: 361 ICDKIVFGKVKQGLGGNVRLILSGAAPLSTHVEAYLRVVTCAHVLQGYGLTETCAGTFVS 420
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
LPNE+SM+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+FSGYYKREDLTK
Sbjct: 421 LPNEISMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFSGYYKREDLTK 480
Query: 490 EVMVDGWFHTG 500
EV+VDGWFHTG
Sbjct: 481 EVLVDGWFHTG 491
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075096|ref|XP_002304555.1| predicted protein [Populus trichocarpa] gi|222841987|gb|EEE79534.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/500 (79%), Positives = 454/500 (90%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ KY++EVEKAKEA G+PSIGPVYRSLFAKDGFP P+PG+ESCWDVFRM+VE+ PNN
Sbjct: 1 MAPRKYLIEVEKAKEAKDGKPSIGPVYRSLFAKDGFPPPVPGLESCWDVFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG+REIV+GKAGKYVW+TYK+VYD+VIKV N+IR+CGVE KCGIYG NC EWI+ M
Sbjct: 61 PMLGRREIVNGKAGKYVWQTYKQVYDVVIKVGNSIRSCGVEPGAKCGIYGANCAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEE KI E+LKTFP +T++LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGASAVEFIICHSEVSIAFVEENKICELLKTFPNSTQYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK GLAVYSWDEFL+LGENKQ++LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVALKEQEEIEKSGLAVYSWDEFLKLGENKQYELPVKKKEDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
++SN++IVT IAGVK LLESV E LTSEDVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 LISNDSIVTLIAGVKRLLESVKESLTSEDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKPTIFCAVPRVL+R+YSGL QK+S+GG LKKTLFN+AYS+KF ++KK
Sbjct: 301 GDVKLLIEDIGELKPTIFCAVPRVLERVYSGLQQKVSTGGFLKKTLFNVAYSHKFSSMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H +ASPI DKIVF+KV+Q GG+VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GLAHHQASPICDKIVFNKVRQGLGGKVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTG 500
YYKREDLT+EV+ DGWFHTG
Sbjct: 481 YYKREDLTEEVLNDGWFHTG 500
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74147576|gb|ABA00144.1| ACS-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/500 (78%), Positives = 452/500 (90%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ +V+EVEK K+AS G+PSIGPVYRS FA +GFPAPIPGMESCWD+FRM+VE+ P+N
Sbjct: 1 MAGNNFVIEVEKGKDASDGQPSIGPVYRSSFAANGFPAPIPGMESCWDIFRMSVEKYPDN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLG+R+IVDGKAGKYVW+TY+EVYD+VIKV N+IR+C V E GKCGIYG NCPEWII M
Sbjct: 61 RMLGRRQIVDGKAGKYVWQTYREVYDIVIKVGNSIRSCDVVEGGKCGIYGANCPEWIISM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICH+ +SIAFVEEKKI E+ KTFP +TEHLKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHAEISIAFVEEKKINELFKTFPASTEHLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQ+ E EK+GL +Y W+EFLQLGENK + LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQKAEAEKHGLKIYPWEEFLQLGENKNYGLPVKKKTDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
+SN++IVT IAGVK LL SVNE+LT +DVY+SYLPLAHIFDR IEE+FIS+GA+IGFWR
Sbjct: 241 FISNDSIVTLIAGVKRLLGSVNEQLTMKDVYISYLPLAHIFDRVIEELFISHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKP+IFCAVPRVLDRIYSGL QKIS+GGLLKK +F++AY+YK++N+KK
Sbjct: 301 GDVKLLVEDIGELKPSIFCAVPRVLDRIYSGLLQKISAGGLLKKKMFDLAYTYKYYNMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G KH EASPI DKIVF KVKQ GG VRLILSGAAPL+ HVE FLRVVAC HVLQGYGLT
Sbjct: 361 GRKHGEASPICDKIVFSKVKQGLGGNVRLILSGAAPLSTHVEEFLRVVACCHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
E+CAG+FVSLPNE+SM+GTVGPPVPN+DV LESVPEM YDAL+STPRGE+C+KG+T+FSG
Sbjct: 421 ESCAGSFVSLPNELSMLGTVGPPVPNIDVRLESVPEMNYDALASTPRGEICIKGNTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTG 500
YYKREDLT+EV++DGWFHTG
Sbjct: 481 YYKREDLTREVLIDGWFHTG 500
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053783|ref|XP_002297977.1| predicted protein [Populus trichocarpa] gi|222845235|gb|EEE82782.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/500 (78%), Positives = 449/500 (89%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M KY+VEVEKAKEA GRPS GPVYRSLFAKDGFP P+PG+ESCWD+FRM+VE+ PNN
Sbjct: 1 MEQRKYLVEVEKAKEAIDGRPSTGPVYRSLFAKDGFPPPVPGLESCWDIFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG REIV+GKAG YVW+TYK+VYD V++V N+IR+CGVE KCGIYG NC EW++ M
Sbjct: 61 PMLGCREIVNGKAGNYVWQTYKQVYDTVVQVGNSIRSCGVEPGAKCGIYGANCAEWVMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEEKKI E+LKTFP +T+++KTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGADAVEFIICHSEVSIAFVEEKKITELLKTFPNSTQYMKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK+GLAVYSWDEFL LGENKQ++LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVASKEKEEIEKFGLAVYSWDEFLNLGENKQYELPVKKKEDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SN++IVT +AGVK LLESVNE LTS+DVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 MISNDSIVTLLAGVKRLLESVNEALTSKDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLLLEDIGELKP+IFCAVPRVLDR+YSGL QK+S+GG L KTLFN+AYS+KF ++KK
Sbjct: 301 GDVKLLLEDIGELKPSIFCAVPRVLDRVYSGLQQKVSTGGFLTKTLFNLAYSHKFSSMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H EASPI DKIVF+KV+Q GG VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GFAHDEASPICDKIVFNKVRQGLGGNVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDV LESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVFLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTG 500
YYKREDLTKEV++DGWFHTG
Sbjct: 481 YYKREDLTKEVLIDGWFHTG 500
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497309|ref|XP_003517503.1| PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/500 (77%), Positives = 446/500 (89%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ ++++EVEKAKEAS GRPS GPVYRSLFAKDGFPAPI G+ SCWDVFR++VE+ P+N
Sbjct: 1 MAQKRFIIEVEKAKEASEGRPSRGPVYRSLFAKDGFPAPIQGLNSCWDVFRLSVEKYPSN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG+REIVDGK GKY W TYKEVYD V+KV N+IR+CG E KCGIYG N EWI+ M
Sbjct: 61 PMLGRREIVDGKPGKYKWLTYKEVYDQVMKVGNSIRSCGYGEGVKCGIYGANSAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
+ACNA GL+CVPLYDTLGAGA+EFIICH+ VSIAF EEKKIPE+LKTFP T++LKTIVS
Sbjct: 121 QACNAHGLYCVPLYDTLGAGAIEFIICHAEVSIAFAEEKKIPELLKTFPNATKYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQ++E+E GL +YSWDEFLQ+G+N+ FDLP+KK++DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQKQEVENSGLEIYSWDEFLQVGQNQSFDLPIKKRSDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
++SNE+I+T +AGVK LLESVNE+LT +DVY+SYLPLAHIFDR IEE FI +GA+IGFWR
Sbjct: 241 LISNESIITLLAGVKRLLESVNEQLTEKDVYISYLPLAHIFDRVIEETFIWHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+ED+GELKPTIFCAVPRVLDR+YSGL QKISSGG LKKTLFN AYSYK +N+KK
Sbjct: 301 GDVKLLIEDVGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKLNNMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G +H EASP+ DKIVFDKVKQ GGRVRLILSGAAPL+ HVE +LRVV CAHVLQGYGLT
Sbjct: 361 GLRHGEASPLLDKIVFDKVKQGLGGRVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDVCLESVPEM YDAL+STPRGE+CVKG T+F+G
Sbjct: 421 ETCAGTFVSLPNEIEMLGTVGPPVPNVDVCLESVPEMGYDALASTPRGEICVKGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTG 500
YYKREDLTKEV++D WFHTG
Sbjct: 481 YYKREDLTKEVLIDEWFHTG 500
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74147588|gb|ABA00145.1| ACS-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/495 (76%), Positives = 447/495 (90%)
Query: 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQ 65
Y+++VE+ K A+ RPSIGPVYRS FA++GFPAPIPGMESCWD+FRM+VE+ PN+ MLG
Sbjct: 7 YIIKVEEGKAATDERPSIGPVYRSCFAENGFPAPIPGMESCWDIFRMSVEKYPNHHMLGH 66
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R+IVDGKAGKYVW+TYK+VYD+V+KV N+IR+CGVEE GKCGIYG NCPEWI+ MEACNA
Sbjct: 67 RQIVDGKAGKYVWQTYKQVYDIVMKVGNSIRSCGVEEGGKCGIYGANCPEWIMTMEACNA 126
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
GL CVPLYDTLGA AVEFIICH+ VSIAFVEEKKI E+ KTFP +T++L+TI+SF KV
Sbjct: 127 HGLSCVPLYDTLGADAVEFIICHAEVSIAFVEEKKIAELFKTFPNSTKYLRTIISFGKVT 186
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
PEQ+ E EK GLA+++W+EFLQLGENKQ+DLP+KKK DICTIMYTSGTTGDPKGV++SNE
Sbjct: 187 PEQKAEAEKQGLAIFTWEEFLQLGENKQYDLPIKKKTDICTIMYTSGTTGDPKGVLISNE 246
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
+I+T +A V CLL VNE+LT DVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKL
Sbjct: 247 SIITLLAAVDCLLGRVNEELTMNDVYISYLPLAHIFDRVIEELFISHGASIGFWRGDVKL 306
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
LLEDIGELKP++FCAVPRVLDRIYSGL QKIS GGLLKKTLFN+AYS+KF+N++ G KH
Sbjct: 307 LLEDIGELKPSVFCAVPRVLDRIYSGLQQKISEGGLLKKTLFNVAYSFKFYNMRNGSKHA 366
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
EASP +D+IVF +VK+ GG +R+ILSGAAPL+ HVE FLRVVAC HV+QGYGLTETCAG
Sbjct: 367 EASPFSDRIVFSQVKERLGGNLRIILSGAAPLSSHVEEFLRVVACCHVMQGYGLTETCAG 426
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485
TFVSLP+E+SM+GTVGPPVPNVDV LESVPEM YDAL+STPRGE+C+KG+T+FSGY+KRE
Sbjct: 427 TFVSLPHELSMLGTVGPPVPNVDVRLESVPEMGYDALASTPRGEICLKGTTLFSGYFKRE 486
Query: 486 DLTKEVMVDGWFHTG 500
DLTKEVM+DGWFHTG
Sbjct: 487 DLTKEVMIDGWFHTG 501
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464058|ref|XP_004149746.1| PREDICTED: long chain acyl-CoA synthetase 4-like [Cucumis sativus] gi|449505070|ref|XP_004162367.1| PREDICTED: long chain acyl-CoA synthetase 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/500 (76%), Positives = 447/500 (89%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
MS MKY++EVEK+K A GRPSIGPVYRS+FAKDGFP PI G++SCWD+FR++VERNP N
Sbjct: 1 MSQMKYLIEVEKSKSAIDGRPSIGPVYRSIFAKDGFPLPIQGLDSCWDIFRLSVERNPGN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLG REIV+GKAGKYVW TYKEVYD V+KV N++RT G E+ KCGIYG NC EWII M
Sbjct: 61 RMLGHREIVNGKAGKYVWLTYKEVYDTVVKVGNSLRTRGFEQGVKCGIYGANCSEWIISM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICHS +S+AFVEEKK+PE+LKTFP TT++LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHSEISVAFVEEKKLPEVLKTFPSTTKYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV P REE EK+G+ ++SWDEFL LGEN+ FDLPVKKK+DI TIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPNLREEFEKHGVEIFSWDEFLLLGENQHFDLPVKKKSDISTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SN++I++ IAGV+ LLE+VNE+L+ +DVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 MISNKSIISLIAGVQRLLENVNEELSPKDVYLSYLPLAHIFDRVIEELFILHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKL++EDIGELKP+IFCAVPRVLDRIY+GL Q++ GGLLK+TLFN+A+S K+ N++K
Sbjct: 301 GDVKLIIEDIGELKPSIFCAVPRVLDRIYAGLTQRLDQGGLLKRTLFNVAFSRKYGNMQK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
GHKH EASPI D+ VF+KVK+ GG VRLILSGAAPL HVE FLRVVACAHVLQGYGLT
Sbjct: 361 GHKHSEASPICDRFVFNKVKEGLGGNVRLILSGAAPLATHVEAFLRVVACAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+SM+GTVGPPVPNVDVCLESVPEM YDALS+TPRGE+CV+G +FSG
Sbjct: 421 ETCAGTFVSLPNELSMLGTVGPPVPNVDVCLESVPEMGYDALSTTPRGEICVRGDPLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTG 500
YYKR+DLT EVM+DGWFHTG
Sbjct: 481 YYKRDDLTNEVMIDGWFHTG 500
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.976 | 0.744 | 0.739 | 5.1e-209 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.982 | 0.749 | 0.711 | 4.7e-206 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.984 | 0.751 | 0.686 | 1.1e-197 | |
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.970 | 0.741 | 0.506 | 2.1e-141 | |
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 0.976 | 0.751 | 0.482 | 6.9e-134 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.895 | 0.65 | 0.390 | 4.5e-82 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.895 | 0.649 | 0.396 | 6.6e-81 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.864 | 0.658 | 0.392 | 1.4e-80 | |
| DICTYBASE|DDB_G0269474 | 673 | fcsB "fatty acyl-CoA synthetas | 0.877 | 0.662 | 0.349 | 2.1e-75 | |
| UNIPROTKB|E2R463 | 698 | ACSL5 "Uncharacterized protein | 0.872 | 0.634 | 0.377 | 9.3e-75 |
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2021 (716.5 bits), Expect = 5.1e-209, P = 5.1e-209
Identities = 367/496 (73%), Positives = 431/496 (86%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY+ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN MLG
Sbjct: 6 KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLG 65
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
+REIVDGK GKYVW+TY+EVYD+V+K+ N++R+ GV++ KCGIYG N PEWII MEACN
Sbjct: 66 RREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGA AVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF V
Sbjct: 126 AHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV 185
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 186 SREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
E+IVT IAGV LL+S NE LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRGDVK
Sbjct: 246 ESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVK 305
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+ED+ ELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF +KKG H
Sbjct: 306 LLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSH 365
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
VEASP+ DK+VF KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE+CA
Sbjct: 366 VEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA 425
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+ST RGE+C++G T+FSGYYKR
Sbjct: 426 GTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKR 485
Query: 485 EDLTKEVMVDGWFHTG 500
EDLTKEV++DGW HTG
Sbjct: 486 EDLTKEVLIDGWLHTG 501
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
Identities = 355/499 (71%), Positives = 428/499 (85%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
S +++ EVE AKEA+ G PS+GPVYRS FA++GFP PI G++SCWD+FR AVE+ PNNR
Sbjct: 3 SQKRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNR 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REI +GKAGKYVWKTYKEVYD+VIK+ N++R+CG++E KCGIYG+NC EWII ME
Sbjct: 63 MLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII H+ VSIAFVEEKKIPE+ KT P +T+++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
VKPEQ+EE EK GL ++SWDEFL+LGE KQ++LP+KK +DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT GV L +VN L+ +DVY+SYLPLAH+FDRAIEE I G +IGFWRG
Sbjct: 243 ISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKP+IFCAVPRVLDR+Y+GL QK+S GG KK +F++A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HV ASP DK+VF+KVKQ GG VR+ILSGAAPL H+E+FLRVVAC +VLQGYGLTE
Sbjct: 363 QSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTF + P+E+ M+GTVGPPVPNVD+ LESVPEM YDAL STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTG 500
YKREDLTKEV +DGW HTG
Sbjct: 483 YKREDLTKEVFIDGWLHTG 501
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1914 (678.8 bits), Expect = 1.1e-197, P = 1.1e-197
Identities = 344/501 (68%), Positives = 426/501 (85%)
Query: 1 MSNMKYVVEVEKAKEA-SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPN 59
M+ +Y+VEVEK K+ GG PS+GPVYRS++AKDGFP P + S WD+FR++VE++PN
Sbjct: 1 MATGRYIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPN 60
Query: 60 NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
N MLG+REIVDGKAGKYVW+TYKEV+++VIK+ N+IRT GV + KCGIYG N PEWII
Sbjct: 61 NPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIIS 120
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179
MEACNA GL+CVPLYDTLGAGA+EFIICH+ VS+AF EE KI E+LKT PK+T++LK IV
Sbjct: 121 MEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIV 180
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
SF +V QR E E++ L +YSWD+FL+LGE K ++LP K+++D+CTIMYTSGTTGDPKG
Sbjct: 181 SFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKG 240
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299
V+++NE+I+ + GVK LL++++E+LTS+DVY+SYLPLAHIFDR IEE+ I A+IGFW
Sbjct: 241 VLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFW 300
Query: 300 RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359
RGDVK+L+EDI LKPT+FCAVPRVL+RIY+GL QK+S GG +KK LFN A+ YK N++
Sbjct: 301 RGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNME 360
Query: 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
KG H +ASPIADKIVF KVK+ GG VRLILSGAAPL H+E+FLRVVACAHVLQGYGL
Sbjct: 361 KGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGL 420
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
TE+C GTFVS+PNE+SM+GTVGPPVPNVD+ LESVPEM YDAL+S PRGE+C++G T+FS
Sbjct: 421 TESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFS 480
Query: 480 GYYKREDLTKEVMVDGWFHTG 500
GYYKREDLT+EV +DGW HTG
Sbjct: 481 GYYKREDLTQEVFIDGWLHTG 501
|
|
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
Identities = 251/496 (50%), Positives = 356/496 (71%)
Query: 7 VVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIP-GMESCWDVFRMAVERNPNNRMLGQ 65
V+ VE+ + A+ PS GPVYR +AKDG +P ++S W F AV++ PN +MLGQ
Sbjct: 8 VLLVEEGRPATAEHPSAGPVYRCKYAKDGL-LDLPTDIDSPWQFFSEAVKKYPNEQMLGQ 66
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R D K G Y W TYKE +D I++ +AIR+ GV+ CGIYG NCPEWII MEAC +
Sbjct: 67 RVTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMS 126
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
G+ VPLYD+LG AVEFII H+ VS+ FV+EK + +L + +LKTIVSF +V
Sbjct: 127 QGITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVS 186
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
Q+EE + ++++SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++N
Sbjct: 187 STQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNA 246
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
I + + +LE + + DV+ SYLPLAH +D+ +E F+S G+++G+WRGD++
Sbjct: 247 AISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRY 306
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
L++D+ LKPT+FC VPRV D++Y+G+ QKIS+ GL++K LF+ AY+YK N++KG
Sbjct: 307 LMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQE 366
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
EASP D+++FDK+K++ GGR ++LSGAAPL HVE FLR++ +++ QGYGLTE+C G
Sbjct: 367 EASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGG 426
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-TPRGEVCVKGSTVFSGYYKR 484
+F +L SM+GTVG P+P V+ L SVPEM YDA S+ PRGE+C++G+++FSGY+KR
Sbjct: 427 SFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKR 486
Query: 485 EDLTKEVMVDGWFHTG 500
+DLT +V++DGWFHTG
Sbjct: 487 QDLTDQVLIDGWFHTG 502
|
|
| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
Identities = 241/499 (48%), Positives = 339/499 (67%)
Query: 4 MK-YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPG-MESCWDVFRMAVERNPNNR 61
MK + +VE+ + G+PS+GPVYR+L ++ GFP PI + + WD+F +VE+ P+N
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFP-PIDSEITTAWDIFSKSVEKFPDNN 59
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG R IVD K G Y+WKTYKEVY+ V+++ +A+R G E + GIYGVNCP+WII ME
Sbjct: 60 MLGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAME 119
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
AC A L CVPLYDTLG+GAV++I+ H+ + FV++ KI +L+ K + LK IVSF
Sbjct: 120 ACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSF 179
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
+ V E + + G+ YSW +FL +G K D K +ICTIMYTSGT+GDPKGV+
Sbjct: 180 TNVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVV 239
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
++++ + TF+ G+ ++ +K+T +DVY+S+LPLAHI DR EE F GA++G++ G
Sbjct: 240 LTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHG 299
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
++ +L +DI ELKPT VPRV +RI+ G+ + + ++ +FN Y +K L +G
Sbjct: 300 NLNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRG 359
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
+ H +ASP+AD I F K++ GGR+RL++SG APL+P +E FLRV C V+QGYGLTE
Sbjct: 360 YSHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTE 419
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
T GT + P+EM M+GTVG P ++ LE V EM YD L P GE+C++G +FSGY
Sbjct: 420 TLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGY 479
Query: 482 YKREDLTKEVMVDGWFHTG 500
YK +LT+EVM DGWFHTG
Sbjct: 480 YKNPELTEEVMKDGWFHTG 498
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 183/469 (39%), Positives = 265/469 (56%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AVE N+ LG R DG G+Y W TY E + + + GV
Sbjct: 81 PEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGV 140
Query: 101 EERGKC-GIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159
+ G C G+Y +N PEW++ AC A VPLYDTLG AV+F++ H+ + F +
Sbjct: 141 NQ-GDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQ 199
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
+ +L +F ++ IV G+ + S+ + L G +
Sbjct: 200 TL-NILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPP 258
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K DI TI YTSGTTG PKGV++++ N++ +AG SV + DVY+SYLPLAH
Sbjct: 259 KPEDIATICYTSGTTGTPKGVVLTHGNLIANVAG-----SSVEAEFFPSDVYISYLPLAH 313
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
I++RA + + + G A+GF++GDV L++D L+PTIFC+VPR+ +RIY G+ + S
Sbjct: 314 IYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSS 373
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
G++KK LF IAY+ K + G S DK+VF+K+K+ GGRVR + SGA+PL+P
Sbjct: 374 GVVKKRLFEIAYNSKKQAIINGRT---PSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSP 430
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
V FLR+ V +GYG+TET ++ + ++ G VG P P +V L VPEM Y
Sbjct: 431 DVMDFLRICFGCSVREGYGMTETSC-VISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNY 489
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGCPHLFL 506
+ PRGE+CV+G +F GYYK E+ T+E++ DGW HTG L+L
Sbjct: 490 TSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWL 538
|
|
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 186/469 (39%), Positives = 264/469 (56%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AV + + LG R VDG G Y W TY E + + + G+
Sbjct: 81 PDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGI 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
GIY +N PEW+I AC++ VPLYDTLG AV+FI+ H+ V F +
Sbjct: 141 PMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAET 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE-NKQFDLPVK 219
+ +L + ++ +V + G+ V S+ L G N Q P
Sbjct: 201 LNSLLSCLSEMPS-VRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFP-P 258
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K +D+ TI YTSGTTG PKGV++++ N++ +AG S + K S DVY+SYLPLAH
Sbjct: 259 KPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISYLPLAH 313
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
I++RA + + + G A+GF++GD LL+D+ L+PT+F +VPR+ +RIY+G+ + +
Sbjct: 314 IYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTS 373
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
G LK+ LFN AY+ K L G ASPI D++VF+K+K GGRVR + SGA+PL+P
Sbjct: 374 GGLKERLFNAAYNAKKQALLNGKS---ASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSP 430
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
V FL+V V +GYG+TET + ++ G VG P P +V L VPEM Y
Sbjct: 431 EVMEFLKVCFGGRVTEGYGMTETSC-VISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506
+ PRGE+CV+G +F+GYYK E TKEV+ DGW HTG L+L
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWL 538
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 180/459 (39%), Positives = 267/459 (58%)
Query: 47 WDVFRMAVERNPNNRMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+DV+R + ++ ++ LG RE++ DGK G Y W +YK+ + +A+ G+ + +
Sbjct: 57 YDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDR 114
Query: 106 CGIYGVNCPEWIIG-MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
GI+ +N PEW++ M A N L V LY TLGA A+E+++ HS +S+ E K + ++
Sbjct: 115 IGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKI 173
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEI-EKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
L + P TT +KTIVS+ + ++ + + +Y +F +LGE V D
Sbjct: 174 L-SMPGTT--IKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPED 230
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283
+CT++YTSG+TG+PKGVM+++ N+V+ +AG V EDV++SYLPLAH F+R
Sbjct: 231 LCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGV----IPEDVHMSYLPLAHSFER 286
Query: 284 AIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343
A+ + G IGF+ G + L DI L+PT C PRV R++ L +++ LK
Sbjct: 287 AVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLK 346
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVET 403
K LFN + K L+ G +PI DK+VF K K GGRV+ ILSG+APL P +
Sbjct: 347 KFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAE 402
Query: 404 FLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALS 463
FLR C V+ GYGL+E G V+ P + + +G VGPP+ ++ L VPEM Y +
Sbjct: 403 FLRACFCCPVVSGYGLSENVGGASVAYPEDNN-VGHVGPPLSACEMKLIDVPEMNYFSTD 461
Query: 464 ST-PRGEVCVKGSTVFSGYYKREDLTKE-VMVDGWFHTG 500
PRGEVC++G VF GY+K + TKE + DGWFHTG
Sbjct: 462 KPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTG 500
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| DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 160/458 (34%), Positives = 263/458 (57%)
Query: 47 WDVFRMAVERNPNNRMLGQREI-VDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+D + ++ + G+R+ +G GK+ W +Y + + + G++ + K
Sbjct: 66 YDSLVKSCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSK 125
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCV-PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
GI+ N EW+I + + + + +CV Y+TLG ++ ++ H+ + +AF + + +
Sbjct: 126 VGIFSKNRLEWLI-VHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKT 184
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPVKKKN 222
L K + LKTI+ F + E ++ G+ +Y++DE ++ G+ N + +
Sbjct: 185 LD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPD 243
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+ TIMYTSGTTG PKGVM++++N+ + + V + K+ DV+ SYLP AH+ +
Sbjct: 244 TLSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFI-----KVYDTDVHYSYLPYAHVLE 298
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
R + GAAIG + GD+ +L ++ L PT+F VPRV +RI + + ++IS L
Sbjct: 299 RVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPAL 358
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
+TLFN AY+ K+ +++ G K + D + F K+KQ+ GG+VR+ILSG+APL+ E
Sbjct: 359 LRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTE 418
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL 462
FLRVV C VLQGYG +E C G ++ S +GT+GPP + ++ L VPE+ YD+
Sbjct: 419 VFLRVVMCCCVLQGYGASEGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSN 477
Query: 463 SSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GEVC++G ++ SGYYK E+ T+E DGWFHTG
Sbjct: 478 GEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTG 515
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| UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 176/466 (37%), Positives = 271/466 (58%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
+++ +DVF+ + + N LG R+ Y W +Y++V D + + + G E
Sbjct: 91 VKTMYDVFQRGLAVSDNGPCLGYRK----PNQPYKWLSYRQVSDRAEYLGSCLLHKGYEP 146
Query: 103 RG--KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE-K 159
GI+ N PEWII AC + VPLYDTLGA A+ +I+ + ++ + +
Sbjct: 147 SSDQSVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGAEAIIYIVNKADIAAVICDTPQ 206
Query: 160 KIPEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPV 218
K +++ K T LK I+ + + +E EK G+ + S + LG+ + F PV
Sbjct: 207 KASTLIENMEKGLTPGLKMIILMDPFEDDLKERAEKCGIEILSLFDAEILGK-ENFRKPV 265
Query: 219 KKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLP 276
+ D+ I +TSGTTGDPKG M++++NI++ ++ +KC+ K T EDV +SYLP
Sbjct: 266 PPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNVSSFLKCM--EYTFKPTPEDVTISYLP 323
Query: 277 LAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
LAH+F+R ++ V S GA +GF++GD++LL ED+ LKPT+F +VPR+L+RIY + +
Sbjct: 324 LAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKTLKPTLFPSVPRLLNRIYDKVQNEA 383
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
+ LKK L N+A S KF+ +KKG + I DK++F K++ + GGR+ +++GAAP
Sbjct: 384 KTP--LKKFLLNLAISCKFNEVKKGI--IRRDSIWDKLIFAKIQATLGGRINFVVTGAAP 439
Query: 397 LTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLESVP 455
++ V FLR V + YG TE AG TF S P + + G VG P+ V LE VP
Sbjct: 440 ISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTS-PGDWTS-GHVGVPLACNHVKLEDVP 497
Query: 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
+M Y ++++ GE+C+KGS VF GY K + TKE + DGW HTG
Sbjct: 498 DMNYFSVNN--EGEICIKGSNVFKGYLKDPEKTKEALDEDGWLHTG 541
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9T0A0 | LACS4_ARATH | 6, ., 2, ., 1, ., 3 | 0.7399 | 0.9763 | 0.7447 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.963 |
| 3rd Layer | 6.2.1.3 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00006758001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (662 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | 0.903 | |||||||
 | GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | 0.901 | |||||||
 | GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | |||||||
 | GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | |||||||
 | GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | |||||||
 | GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | |||||||
 | GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | |||||||
 | GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 508 | |||
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 0.0 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-135 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-105 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-83 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 7e-82 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 5e-75 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-71 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 6e-69 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 4e-64 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-54 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-49 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-46 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 3e-42 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-36 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-31 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-31 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 9e-30 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-29 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-27 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-27 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-27 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 8e-26 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-25 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 5e-25 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-24 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-24 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 7e-24 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-23 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-23 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-22 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 8e-22 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 9e-22 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-21 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-20 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-20 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 4e-19 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-19 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 4e-18 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-17 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 3e-17 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-17 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 4e-17 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 7e-17 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 2e-16 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-16 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-16 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-15 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-15 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 6e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-15 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-14 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 5e-14 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 7e-14 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 8e-14 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-13 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-13 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 4e-13 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 6e-13 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 4e-12 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-12 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-11 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-11 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-11 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-11 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-11 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-11 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 9e-11 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-10 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-10 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 2e-10 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 2e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-10 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 5e-10 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-09 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-09 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 2e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-09 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 6e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-08 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 3e-08 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 3e-08 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 3e-08 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 4e-08 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-08 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-08 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 5e-08 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 7e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 7e-08 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 8e-08 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-07 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-07 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-07 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 3e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-07 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-07 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 5e-07 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 6e-07 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-06 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-06 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-06 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-06 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 3e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 3e-06 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 4e-06 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 7e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 8e-06 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 9e-06 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-05 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-05 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-05 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 5e-05 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 5e-05 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 5e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 7e-05 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 7e-05 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 8e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 8e-05 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-04 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 6e-04 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 6e-04 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 7e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-04 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.001 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 0.001 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 0.001 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 0.002 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 0.002 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 0.002 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.002 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.002 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 0.002 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.002 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 0.002 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 0.003 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.003 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 0.003 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 0.003 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.004 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.004 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.004 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 853 bits (2205), Expect = 0.0
Identities = 370/499 (74%), Positives = 435/499 (87%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
K++ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN
Sbjct: 3 QQKKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNP 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REIVDGK GKYVW+TY+EVYD+VIK+ N++R+ GV++ KCGIYG N PEWII ME
Sbjct: 63 MLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
V EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT IAGV LL+S N LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRG
Sbjct: 243 ISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HVEASP+ DK+VF+KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE
Sbjct: 363 QSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTG 500
YKREDLTKEV++DGW HTG
Sbjct: 483 YKREDLTKEVLIDGWLHTG 501
|
Length = 666 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 719 bits (1858), Expect = 0.0
Identities = 290/497 (58%), Positives = 376/497 (75%), Gaps = 1/497 (0%)
Query: 4 MKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRML 63
Y V+VE+++ A+GG+PS GPVYRS++AKDG ++S W F AV++ PNN+ML
Sbjct: 3 ETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQML 62
Query: 64 GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123
G+R++ D K G YVW TYKEVYD I++ +AIR+ GV +CGIYG NCPEWII MEAC
Sbjct: 63 GRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
Query: 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183
N+ G+ VPLYDTLGA AVEFII H+ VSIAFV+E KI +L PK + +LKTIVSF
Sbjct: 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGD 182
Query: 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
V EQ+EE E+ G++ +SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++
Sbjct: 183 VSSEQKEEAEELGVSCFSWEEFSLMG-SLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDV 303
N I+ + LL+ + T ED Y SYLPLAH++D+ IE IS GA+IGFW+GD+
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDI 301
Query: 304 KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363
+ L+ED+ LKPTIFC VPRV DRIY+G+ QKISSGG+L+K LF+ AY+YK NL+KG K
Sbjct: 302 RYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK 361
Query: 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423
EASP D++VFDK+K+ GGRVRL+LSGAAPL HVE FLRV +C+ + QGYGLTE+C
Sbjct: 362 QEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESC 421
Query: 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK 483
G F S+ N SM+GTVG P+ ++ LESVPEM YDALS PRGE+C++G+T+FSGY+K
Sbjct: 422 GGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHK 481
Query: 484 REDLTKEVMVDGWFHTG 500
R+DLT+EV++DGWFHTG
Sbjct: 482 RQDLTEEVLIDGWFHTG 498
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 622 bits (1607), Expect = 0.0
Identities = 247/498 (49%), Positives = 345/498 (69%), Gaps = 1/498 (0%)
Query: 4 MK-YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRM 62
MK + +VE+ + G+PS+GPVYR+L +K GFP + + WD+F +VE+ P+N+M
Sbjct: 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60
Query: 63 LGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122
LG R IVDGK G Y+WKTYKEVY+ V+++ +A+R G E + GIYG NCP+WI+ MEA
Sbjct: 61 LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120
Query: 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182
C A L CVPLYDTLG GAV++I+ H+ + FV++KKI E+L+ K+ + LK IVSF+
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180
Query: 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV 242
V E+ ++ + G+ YSW +FL +G+ + K DICTIMYTSGT+GDPKGV++
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240
Query: 243 SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGD 302
++E + TF+ GV +E +K+T +DVY+S+LPLAHI DR IEE F GA++G++ GD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300
Query: 303 VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362
+ L +D+ ELKPT+ VPRV +RI+ G+ + + ++ +FN Y YK + +G+
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360
Query: 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422
H +ASP+AD + F KVK GGR+RL++SG APL+ +E FLRV +CA V+QGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420
Query: 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY 482
T + P+EM M+GTVG P ++ LE VPEM YD L PRGE+CV+G +FSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480
Query: 483 KREDLTKEVMVDGWFHTG 500
K +LT+EVM DGWFHTG
Sbjct: 481 KNPELTEEVMKDGWFHTG 498
|
Length = 660 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 540 bits (1395), Expect = 0.0
Identities = 195/428 (45%), Positives = 259/428 (60%), Gaps = 45/428 (10%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133
G Y W +YKEV + + + + +R G++ K GI+ N PEWII +AC + L VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193
YDTLG A+E+I+ + +SI F + K
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVK--------------------------------- 87
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
VYS++E +LG+ + K D+ TIMYTSGTTG+PKGVM+++ NIV +AG
Sbjct: 88 -----VYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL 313
+ + V E + DVY+SYLPLAHIF+R +E V + G IG++ GD + L DI EL
Sbjct: 143 I---NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
KPT+F VPRVLDRIY G+ K+++ G LK+TLFN AY+YK L++G H ASP+ DK
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+VF K+K + GGRVRL+LSG APL+P + FLRV VLQGYGLTETCAG +S P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317
Query: 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492
+ G VGPP+P ++ L VPEM Y A PRGE+C++G VF GYYK + T E
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376
Query: 493 VDGWFHTG 500
DGWFHTG
Sbjct: 377 EDGWFHTG 384
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 404 bits (1041), Expect = e-135
Identities = 185/481 (38%), Positives = 267/481 (55%), Gaps = 17/481 (3%)
Query: 26 VYRS----LFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTY 81
VYRS L FP P + + D F AVE + + LG R VDG G+Y W TY
Sbjct: 23 VYRSARSPLKLVSRFP-DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81
Query: 82 KEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGA 141
E + + + G+ + G+Y +N PEW+I AC+A VPLYDTLG A
Sbjct: 82 GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141
Query: 142 VEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201
V+FI+ H+ V+ F + + +L + ++ IV G+ + +
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLL-SCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVT 200
Query: 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261
+ + L G + K D+ TI YTSGTTG PKGV++++ N++ +AG S+
Sbjct: 201 YSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS-----SL 255
Query: 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAV 321
+ K DV++SYLPLAHI++R + V + G A+GF++GD L++D+ L+PTIFC+V
Sbjct: 256 STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSV 315
Query: 322 PRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQ 381
PR+ +RIY G+ + G LK+ LFN AY+ K L+ G SP+ D++VF+K+K
Sbjct: 316 PRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKA 372
Query: 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441
GGRVR + SGA+PL+P V FLR+ VL+GYG+TET + + ++ G VG
Sbjct: 373 KLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTET-SCVISGMDEGDNLSGHVG 431
Query: 442 PPVPNVDVCLESVPEMEY-DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499
P P +V L VPEM Y PRGE+CV+G +F GYYK E T+EV+ DGW HT
Sbjct: 432 SPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHT 491
Query: 500 G 500
G
Sbjct: 492 G 492
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-105
Identities = 145/477 (30%), Positives = 233/477 (48%), Gaps = 41/477 (8%)
Query: 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWK--------TYKEVYDLVIKVVN 93
E + E + + L +R ++K TY+E+Y+ V + +
Sbjct: 1 LGERISMAWEDVAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALAS 60
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+ + G+ + I+ N PEW I A ALG VP+Y T + +I+ S +
Sbjct: 61 GLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKV 120
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE--EIEKYGLAVYSW---DEFLQL 208
FVE +++ +++ E +V + RE E + L V+ FL
Sbjct: 121 IFVENQELLDLVLPVL---EDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID 177
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
+ + K +D+ TI+YTSGTTG PKGVM+++ N++ +AG+ V +
Sbjct: 178 SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID----EVLPPIGPG 233
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRI 328
D +S+LPLAHIF+RA E G ++ D + LLED+ E++PT+ VPRV +++
Sbjct: 234 DRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKV 293
Query: 329 YSGLNQKISSGGLLKKTLFNIAYS----YKFHNLKKGHKHVEASPIADKIVFDKVKQSFG 384
Y G+ +K++ +++ LF A L G + +AD++VF K++ + G
Sbjct: 294 YKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGG-GPLSWLLVADRLVFRKIRDALG 352
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
GR+R LSG APL+P + F R + +L+GYGLTET A V+ P+ ++GTVG P+
Sbjct: 353 GRIRYALSGGAPLSPELLHFFRSLGI-PILEGYGLTETSAVVSVNPPDRF-VLGTVGKPL 410
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
P ++V + GE+ V+G V GYYK + T E DGWF TG
Sbjct: 411 PGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG 454
|
Length = 613 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 1e-83
Identities = 171/520 (32%), Positives = 257/520 (49%), Gaps = 80/520 (15%)
Query: 36 FPAPIPGMESCWD-------VFRMAVERNPNNRMLGQREIV--------DGKA------G 74
FP + E+ W+ +F + ++ + R+LG R+++ DG+ G
Sbjct: 46 FPELV---ETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLG 102
Query: 75 KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY 134
+Y W TY +V++ V + + G + + I+ EW+I ++ C + V +Y
Sbjct: 103 EYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIY 162
Query: 135 DTLGAGAVEFIICHS----GVSIAFVEEKKIPEMLKTFPKTTEHLKTI---VSFSKVKPE 187
+LG A +CHS V+ + K+ LK + L+T+ + +
Sbjct: 163 ASLGEEA----LCHSLNETEVTTVICDSKQ----LKKLIDISSQLETVKRVIYMDDEGVD 214
Query: 188 QREEIEKYG-LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ V S+ E +LG+ D + NDI IMYTSG+TG PKGVM+++ N
Sbjct: 215 SDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN 274
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
IV +AGV +V KL DVY++YLPLAHI + A E V + GAAIG+ G L
Sbjct: 275 IVATVAGVM----TVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTL 328
Query: 307 LE-----------DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355
+ D LKPT+ AVP +LDR+ G+ +K+ + G L K LF+IAY
Sbjct: 329 TDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAY---- 384
Query: 356 HNLKKGHKHVEAS---------PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR 406
K+ +E S + D +VF K++ GGR+R +LSG APL+ + F+
Sbjct: 385 ---KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFIN 441
Query: 407 VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-T 465
+ A + QGYGLTETCAG S ++ S +G VGPP+P V L S E Y
Sbjct: 442 ICLGAPIGQGYGLTETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPM 500
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVM-VDG----WFHTG 500
PRGE+ + G +V GY+K ++ T EV VD WF+TG
Sbjct: 501 PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG 540
|
Length = 696 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 7e-82
Identities = 130/429 (30%), Positives = 193/429 (44%), Gaps = 115/429 (26%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133
G + T+ E+ + V ++ + GV+ + I N PEW+I A A G VP+
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193
Y T + E + I++ S +
Sbjct: 61 YPTS---------------------------------SPEEVAYILNDSGAR-------- 79
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
+ E+K +D+ T++YTSGTTG+PKGVM+++ N +A
Sbjct: 80 ------------VVFVEDK--------PDDLATLIYTSGTTGNPKGVMLTHRN---LLAQ 116
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAIGFWRGDVKLLLEDIGE 312
LLE + L+ D +S+LPLAH+F+ R E + +S+GA + F + LLED+ E
Sbjct: 117 AAALLEVIP--LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNF-AESPETLLEDLRE 173
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
++PT+F AVPRV ++IY+G+ K+++ G LK+ LF A
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA---------------------- 211
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432
GGR+R +SG APL P V F R + +L+GYGLTET V+ P
Sbjct: 212 ---------LGGGRLRFAVSGGAPLPPEVLEFFRALGI-PILEGYGLTETSGVATVNRP- 260
Query: 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
IGTVG P+P V+V + GE+ V+G V GYYK + T E +
Sbjct: 261 GDIRIGTVGKPLPGVEVRI-------------AEDGEILVRGPNVMKGYYKNPEATAEAL 307
Query: 493 -VDGWFHTG 500
DGW HTG
Sbjct: 308 DEDGWLHTG 316
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 5e-75
Identities = 130/445 (29%), Positives = 216/445 (48%), Gaps = 50/445 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+++ ++ + G+ + IY EW+ + + + +Y LG
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182
Query: 140 GAVEF---------IICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE 190
A+ + I+C+ K +P +L+ TI+ +
Sbjct: 183 DALAYALRETECKAIVCNG---------KNVPNLLRLMKSGGMPNTTIIYLDSLPAS--- 230
Query: 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVK---KKNDICTIMYTSGTTGDPKGVMVSNENI 247
++ G + +W + + G + P+ +D+ IMYTSGTTGDPKGVM ++ ++
Sbjct: 231 -VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSL 289
Query: 248 VTFIAGVKCLLESVNE---KLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
AG+ L + +N+ ++ Y SYLPLAHI + + +F++ GA IGF G +
Sbjct: 290 T---AGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPR 344
Query: 305 LLLE-------DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357
L + D+ E +P VPR+ D I + K+ G LK+ +F+ AY +
Sbjct: 345 TLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRA 404
Query: 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGY 417
LK+G + +P ++ VF + GGRVR +LSG PL+ + F+ VV V+QG+
Sbjct: 405 LKEG----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-GMVIQGW 459
Query: 418 GLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY-DALSSTPRGEVCVKGST 476
GLTET + ++ VG + V++ L E ++ D PRGE+ ++G
Sbjct: 460 GLTETVCCGGIQRTGDLE-PNAVGQLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPF 516
Query: 477 VFSGYYKREDLTKEVMV-DGWFHTG 500
+F GYYK+E+LT+EV+ DGWFHTG
Sbjct: 517 LFKGYYKQEELTREVLDEDGWFHTG 541
|
Length = 700 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 1e-71
Identities = 129/432 (29%), Positives = 197/432 (45%), Gaps = 60/432 (13%)
Query: 73 AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVP 132
G++ T+ +V D ++ A+++ G+E + I NC EWII A G VP
Sbjct: 1 GGQWHEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVP 60
Query: 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF-SKVKPEQREE 191
LY TL A + +++ HS FV + + +K E L TI+ F +
Sbjct: 61 LYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMK--AGVPEGLPTIILFPYSTLKDH--- 115
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
Y WD+ L E Q P+ + D+ TI+YTSGTTG PKGVM+S
Sbjct: 116 --------YKWDDLLAATEPLQGR-PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAA 166
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAAIGFWRGDVKLLLEDI 310
G ++ LT D +SYLPLAHI +R +E + +GA + F + D+
Sbjct: 167 QGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVES-LDTFAADL 220
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+PT+F +VPR+ + G+ K+ L L I PI
Sbjct: 221 QRARPTVFFSVPRLWTKFQQGILAKLPPEKLNL--LLKI-------------------PI 259
Query: 371 ADKIVFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429
+V K+ + G + RL SGAAP+ P + + R + + +GYG+TE A + ++
Sbjct: 260 LSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGL-PICEGYGMTENFAYSTLN 318
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
P + IGTVG P+P V++ + + GE+ ++ + SGYYK + T
Sbjct: 319 YPGDRR-IGTVGKPIPGVELKI-------------SEDGEILIRSPGLMSGYYKDPEKTA 364
Query: 490 EVMV-DGWFHTG 500
E DGW HTG
Sbjct: 365 EAFTEDGWLHTG 376
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 6e-69
Identities = 110/436 (25%), Positives = 176/436 (40%), Gaps = 87/436 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+E+ + ++ A+R GV + I N PEW++ + A G VPL +L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ +I+ S + +++ +P++L+ K L I+ + +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEG------------L 108
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
D+ L G + + P +D+ I+YTSGTTG PKGVM+++ N++ AG+
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGF---WRGDVKLLLEDIGELK 314
LT D + LPL ++ E+F + G + + D LL+ I + K
Sbjct: 168 ----GLTPGDRVLLLLPLHFDG--SVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
T+ VP +L + +K Y +L
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEK----------------KYDLSSL---------------- 249
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
RL+LSG PL P + ++ GYG TET +LP +
Sbjct: 250 -------------RLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296
Query: 434 MSM-IGTVGPPVPNVDVC-----LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ G++G P+P V+V E VP E GE+C++G V GY +L
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEPVPPGE--------VGELCIRGPGVARGYLNDPEL 348
Query: 488 TKEVMV-DGWF--HTG 500
T E V DGW TG
Sbjct: 349 TAERFVEDGWGMYRTG 364
|
Length = 412 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 4e-64
Identities = 133/442 (30%), Positives = 218/442 (49%), Gaps = 36/442 (8%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG-MEACNALGLHCVP 132
+ TYK+ Y+ + A G+E GI G N PEW I + A A G+ V
Sbjct: 4 DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGI-AVG 62
Query: 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192
+Y T A +++ S +I V+ K + + HLK I+ + RE +
Sbjct: 63 IYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-------REPL 115
Query: 193 EKYGLAVYSWDEFLQLG---ENKQFD--LPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
++ +YSW EF++LG ++Q D + +K N CT++YTSGTTG PKGVM+S++NI
Sbjct: 116 KEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE-EVFISNGAAIGFWRGDV--K 304
T+ A K ++ ++ + ++ VSYLPL+HI + ++ + IS G + F + D
Sbjct: 176 -TWTA--KAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKG 232
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF-HNLKK--G 361
L++ + E++PT F VPRV ++I + + LK+ + + A NLK G
Sbjct: 233 TLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGG 292
Query: 362 HKHVEASP-IADKIVFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
+A K+VF KV+++ G R + +GAAP++ F + +++ YG+
Sbjct: 293 ESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIP-IMELYGM 351
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
+ET VS P + + G +P + + DA GE+C+ G VF
Sbjct: 352 SETSGPHTVSNPQNYR-LLSCGKALPGCETKIH-----NPDADGI---GEICIWGRHVFM 402
Query: 480 GYYKREDLTKE-VMVDGWFHTG 500
GY E+ T+E + DGW H+G
Sbjct: 403 GYLNMEEKTEEAIDEDGWLHSG 424
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 1e-54
Identities = 105/469 (22%), Positives = 179/469 (38%), Gaps = 79/469 (16%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
+ + A RNP+ R + TY+E+ ++ A++ GV
Sbjct: 8 TAELTLASLLERAARRNPD------RPALIFLGRGGRL-TYRELDRRANRLAAALQALGV 60
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
+ + I N PE++I A G VPL L + +I+ +G + +
Sbjct: 61 KPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEF 120
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+L+ + + ++ + + + G D
Sbjct: 121 AA-LLEAVAEALPVVLVVL----------LVGDADDRLPITLEALAAEGPGPDADARPVD 169
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ ++YTSGTTG PKGV++++ N++ A + ++ LT +DV +S+LPL HI
Sbjct: 170 PDDLAFLLYTSGTTGLPKGVVLTHRNLL---ANAAGIAAALGGGLTPDDVVLSWLPLFHI 226
Query: 281 FDRAIEEVFIS---NGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
F + ++ G + D + +L I + K T+ VP L + L+
Sbjct: 227 F--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL---LDN 281
Query: 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394
+K +RL+LSG
Sbjct: 282 P-----------------------------------------EKDDDDLSSSLRLVLSGG 300
Query: 395 APLTPHV-ETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLE 452
APL P + E F +L+GYGLTET T + ++ G+VG P+P V+V +
Sbjct: 301 APLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIV 360
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
+ + GE+ V+G V GY+ R + T E DGW TG
Sbjct: 361 DP---DGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG 406
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-49
Identities = 108/467 (23%), Positives = 189/467 (40%), Gaps = 90/467 (19%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
+ R ++P+ +E V + TY E+ + V ++ NA+R GV++ +
Sbjct: 10 RILRHGARKHPD------KEAVYFDGRRT---TYAELDERVNRLANALRALGVKKGDRVA 60
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
++ N E++ A +G P+ L + +I+ + + V+ + +P +
Sbjct: 61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI 120
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
P+ ++T++ + V ++E L + FD P +ND +
Sbjct: 121 LPQLP-TVRTVIV---EGDGPAAPLAPE---VGEYEELLA-AASDTFDFPDIDENDAAAM 172
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
+YTSGTTG PKGV++S+ N+ V L KL+ +DVY+ +P+ H+ +
Sbjct: 173 LYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVHAWGLPY 227
Query: 288 VFISNGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
+ + GA R D + LL+ I + T F AVP + LLK
Sbjct: 228 LALMAGAKQVIPR--RFDPENLLDLIETERVTFFFAVPTIW-------------QMLLKA 272
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VET 403
AY F +L RL++ G A L P +
Sbjct: 273 ---PRAYFVDFSSL-----------------------------RLVIYGGAALPPALLRE 300
Query: 404 FLRVVACAHVLQGYGLTETC-AGTF----VSLPNEMSMIGTVGPPVPNVDVCL-----ES 453
F ++QGYG+TET + LP + + + G P+P V+ + +
Sbjct: 301 FKEKFGID-LVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDE 359
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P + GE+ V+G + GY+ R + T E + GW HTG
Sbjct: 360 LPPDGGEV------GEIIVRGPWLMQGYWNRPEATAETIDGGWLHTG 400
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 4e-46
Identities = 104/461 (22%), Positives = 167/461 (36%), Gaps = 117/461 (25%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D+ A R P+ R + K TY E+ +L + ++ GV++ +
Sbjct: 3 DLLERAARRFPD------RPALTFFGRKL---TYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
+ NCP++ I G VP+ +E + SG + V
Sbjct: 54 LMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV----------- 102
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
S+++ L G +D+ +
Sbjct: 103 -------------------------------AISFEDALASGAPLPL-PVELSPDDLAVL 130
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIE 286
YT GTTG PKG M+++ N+V A V+ + V + ED +++ LPL HIF
Sbjct: 131 QYTGGTTGVPKGAMLTHRNLV---ANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNM 187
Query: 287 EVFISNGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345
+ + GA +L++I + TIF VP +Y+ L
Sbjct: 188 LLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----LYNALLN----------- 232
Query: 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETF 404
+K ++ +RL +SG APL V E F
Sbjct: 233 ----HPEFKKYDFS--------------------------SLRLCISGGAPLPVEVAERF 262
Query: 405 LRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEY 459
+++GYGLTET T V+ + G++G P+P +V + +P E
Sbjct: 263 EEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGE- 320
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ V+G V GY+ R + T EV+ DGW TG
Sbjct: 321 -------VGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTG 354
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-42
Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 18/317 (5%)
Query: 189 REEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV 248
+E+ +K G+++ +D+ + + + + + + I +I+YTSGT+G PKGVM+SN+N+
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330
Query: 249 -TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLL 307
T + K S+ +K + ++SYLP++HI++R I + G I W D+
Sbjct: 331 NTVVPLCKH---SIFKKY-NPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFS 386
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
+DI K I VP+V +RIY+ + +I++ LK+ L K +L+K + +
Sbjct: 387 KDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVK-----KILSLRKSNNNGGF 441
Query: 368 SPIADKI--VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
S + I + K+K + +IL+G L+P + L V+ + QGYGLTET
Sbjct: 442 SKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGP 501
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME-YDALSSTPRGEVCVKGSTVFSGYYKR 484
FV ++ + GP PN V E Y A + P+GE+ +K ++FSGY+
Sbjct: 502 IFVQHADDNNTESIGGPISPNT---KYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLE 558
Query: 485 EDLTKEVMV-DGWFHTG 500
++ TK DG+F TG
Sbjct: 559 KEQTKNAFTEDGYFKTG 575
|
Length = 746 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 99/435 (22%), Positives = 161/435 (37%), Gaps = 83/435 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH-----CVPLY 134
TY E+ V + A+ G+ + + I+ N P W+I ALG VPL
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIA-----ALGALKAGAVVVPLN 86
Query: 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194
A +I+ FV + + L+ +V + + E K
Sbjct: 87 TRYTADEAAYILARGDAKALFVLGLFLGV-DYSATTRLPALEHVVICETEEDDPHTEKMK 145
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254
++ +FL G+ + V +D+ I++TSGTTG PKG M+++ +++ A
Sbjct: 146 ------TFTDFLAAGDPAERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLSNAADW 198
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAI----GFWRGDVKLLLED 309
L LT D Y++ P H+F +A + GA I F D +
Sbjct: 199 AEYL-----GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVF---DPDEVFRL 250
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
I + T+ P T++N + +S
Sbjct: 251 IETERITVLPGPP----------------------TMYNSLLQH-----PDRSAEDLSS- 282
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VETFLRVVACAHVLQGYGLTETC-AGTF 427
+RL ++GAA + +E F + VL GYGL+E TF
Sbjct: 283 -----------------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF 325
Query: 428 VSLPNEMSMI-GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486
L ++ + GT+G + V+ + + E GE+ V+G V GYY +
Sbjct: 326 NRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV---GELLVRGPNVMKGYYDDPE 382
Query: 487 LTKEVM-VDGWFHTG 500
T + DGW HTG
Sbjct: 383 ATAAAIDADGWLHTG 397
|
Length = 513 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 81/283 (28%), Positives = 119/283 (42%), Gaps = 59/283 (20%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGV++S+ N +A + L +++ LT DV +S LPL H+
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRN---LLANAQALAQAIG--LTEGDVLLSVLPLFHVVG 55
Query: 283 R--AIEEVFISNGAAIGFWRGDV-KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
+ ++ G + + LE I + + T+ VP + D +
Sbjct: 56 GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------- 104
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
K E +RL++SG PL+P
Sbjct: 105 ----------------------AKAAEDRGYDLS------------SLRLLISGGEPLSP 130
Query: 400 HV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
+ E F +L+GYGLTET T + +E+ GTVG PVP V+V + V E E
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDE-E 186
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKR-EDLTKEVMVDGWFHTG 500
L GE+ V+G V GY+ + T DGW+ TG
Sbjct: 187 GKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG 229
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-31
Identities = 86/296 (29%), Positives = 122/296 (41%), Gaps = 69/296 (23%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276
V K++D+ + Y+SGTTG KGVM+++ N IA V L+ EDV + LP
Sbjct: 153 VVIKQDDVAALPYSSGTTGRSKGVMLTHRN---LIANVAQLVAGEGPNFDREDVTLCVLP 209
Query: 277 LAHIFD-----RAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDR 327
+ HI+ A+ + GA + F D++ L I + K T VP ++
Sbjct: 210 MFHIYGLTVILLAL----LRLGATVVVMPRF---DLEKFLAAIEKYKVTHLPVVPPIV-- 260
Query: 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387
L+K PI DK +KQ
Sbjct: 261 -----------LALVKH------------------------PIVDKYDLSSLKQ------ 279
Query: 388 RLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVP 445
I SGAAPL + E F + QGYG+TE+ T + E G+VG VP
Sbjct: 280 --IGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVP 337
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
NV+ + PE ++L GE+ V+G V GY + T E + DGW HTG
Sbjct: 338 NVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTG 391
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-30
Identities = 81/290 (27%), Positives = 120/290 (41%), Gaps = 75/290 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGVM+++ N++ V L L+ DVY+ PL H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLA--NAVNALAG---VDLSPGDVYLLAAPLYH--- 53
Query: 283 RAIEEVFISNGAAIG-----FWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
A +F+ A G + D + +L+ I + T VP + R
Sbjct: 54 -AAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQR---------- 102
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPL 397
LL+ + F + S +RLI+ GAAP+
Sbjct: 103 ---LLR--------------------LPD---------FARYDLS---SLRLIIYGAAPM 127
Query: 398 TPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVDVCL---- 451
+ + +QGYG+TET T + P + +G+VG PVP V+V +
Sbjct: 128 PAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDED 186
Query: 452 -ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P E GE+ V+G V +GY+ R + T E + DGW HTG
Sbjct: 187 GRELPPGE--------VGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTG 228
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 73/292 (25%), Positives = 107/292 (36%), Gaps = 75/292 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I YTSGTTG PKG M+++ N++ + + LT D + +PL H+F
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLN---NGYSIARRL--GLTEGDRTLVPVPLFHVF- 56
Query: 283 RAIEEVF---ISNGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
+ ++ GA + + D L I + T VP +
Sbjct: 57 -GLVLGVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIA--------- 104
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
LL+ F+ + +L+ G I GA
Sbjct: 105 ----LLEHPDFD---KFDLSSLRTG----------------------------ISGGAPV 129
Query: 397 LTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCL--- 451
V A + GYG+TET + ++ GTVG P+P V+V +
Sbjct: 130 PPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVDP 189
Query: 452 --ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV-MVDGWFHTG 500
VP E GE+CV+G +V GYY + T E DGW HTG
Sbjct: 190 DGGEVPPGE--------VGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG 233
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-27
Identities = 121/510 (23%), Positives = 191/510 (37%), Gaps = 123/510 (24%)
Query: 34 DGFPAPI-PGMESCWDVFRMAVERNPNNRML---GQREIVDGKAGKYVWKTYKEVYDLVI 89
P + G + D++ AV R + L G TY E+ V
Sbjct: 21 PWTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATT------------TYAELGKQVR 68
Query: 90 KVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV---PLYDTLGAGAVEFII 146
+ +R GV + I NCP+ I+ A LG V PLY A +E
Sbjct: 69 RAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT---AHELEHPF 125
Query: 147 CHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS--FSKVKP---------------EQR 189
G +A V +K P ++ +TT L+TIVS P + R
Sbjct: 126 EDHGARVAIVWDKVAP-TVERLRRTTP-LETIVSVNMIAAMPLLQRLALRLPIPALRKAR 183
Query: 190 EEIEKYGLAVYSWDEFLQ---LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ W+ + G+ P +D+ I+YTSGTTG PKG +++ N
Sbjct: 184 AALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRN 243
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIG-----FWRG 301
+ A K + + + E V + LP+ H + + +IG
Sbjct: 244 LFANAAQGKAWVPGLGDG--PERVLAA-LPMFHAYGLTLCLTL---AVSIGGELVLLPAP 297
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
D+ L+L+ + + PT VP + ++I
Sbjct: 298 DIDLILDAMKKHPPTWLPGVPPLYEKI--------------------------------- 324
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VETFLRVVACAHVLQGYGLT 420
EA+ + V+ +F SGA L VE + ++ +++GYGLT
Sbjct: 325 ---AEAAE-ERGVDLSGVRNAF--------SGAMALPVSTVELWEKLTG-GLLVEGYGLT 371
Query: 421 ETCAGTFVSLPNEMS---MIGTVGPPVPNVDVCL-------ESVPEMEYDALSSTPRGEV 470
ET + + N MS G VG P P+ +V + E++P+ E GE+
Sbjct: 372 ETSP---IIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE--------EGEL 420
Query: 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
V+G VF GY+ R + T + +DGWF TG
Sbjct: 421 LVRGPQVFKGYWNRPEETAKSFLDGWFRTG 450
|
Length = 573 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 107/456 (23%), Positives = 170/456 (37%), Gaps = 115/456 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+E YD ++ +A+ G+ + + N P + G VPL L A
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 140 GAVEFIICHSGVSIAFVEEKKIP--EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197
+ FI+ HS + FV+++ + E T E + T + E EE +
Sbjct: 91 DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGD---- 146
Query: 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257
+++ L G+ +P + D ++ YTSGTTG+PKGV+ ++ A + L
Sbjct: 147 ----YEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRG-----AYLNAL 197
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-------AAIG----FWRG-DVKL 305
+ + VY+ LP+ H NG A+G R D
Sbjct: 198 GNVIEWGMPDRPVYLWTLPMFH-----------CNGWCFPWAITAVGGTHVCLRKVDAPA 246
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
+ + I + K T C P VL+ L N
Sbjct: 247 IYDLIEKHKVTHLCGAPTVLN------------------MLANAP--------------- 273
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTET-- 422
+ K VR++ +GA P P V ++ V YGLTET
Sbjct: 274 -----------EADKLPLPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTETYG 319
Query: 423 ----CA--GTFVSLPNE----MSM---IGTVGPPVPNVDVCLESVPEMEYDALSSTPR-- 467
C + +LP E + + VG + VDV ++ + + PR
Sbjct: 320 PITVCEWKPEWDALPAEERARLKARQGVRYVG--LEEVDV-------VDPETMKDVPRDG 370
Query: 468 ---GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ ++G+TV GYYK + T+E GWFH+G
Sbjct: 371 KTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSG 406
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 108/470 (22%), Positives = 182/470 (38%), Gaps = 104/470 (22%)
Query: 61 RMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
R G REIV G TY + Y V ++ NA+ + GV+ + N +
Sbjct: 7 RYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLEL 66
Query: 120 MEACNALG--LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKT 177
A +G LH + L + +II H+ + FV++ +P +L+ +K
Sbjct: 67 YFAVPGMGAVLHTLNP--RLSPEQIAYIINHAEDKVIFVDDDFLP-LLEAIAPRLPTVKA 123
Query: 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237
+V + + VY+++E L+ E+ +++ P +N + YTSGTTG+P
Sbjct: 124 VVVYDDADMPETS-----LPNVYAYEELLE-EESPEYEWPELDENTAAGLCYTSGTTGNP 177
Query: 238 KGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAA 295
KGV+ S+ ++V T + L +S+ L+ D + +P+ H+ N
Sbjct: 178 KGVVYSHRSLVLHTLAS---ALPDSLG--LSESDTVLPVVPMFHV-----------NAWG 221
Query: 296 IGF---WRG----------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
+ + G D LL+ I E K T+ VP + GLL
Sbjct: 222 LPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW-------------LGLL 268
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
L+ K R+++ G+A +E
Sbjct: 269 N-------------YLEANGKD------------------LSSLRRVVVGGSALPRSLIE 297
Query: 403 TFLRVVACAHVLQGYGLTETC-AGTFVSLPNEMSMIG---------TVGPPVPNVDVCL- 451
V+ +G+TET GT L + + G PVP V++ +
Sbjct: 298 KLEE--RGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV 355
Query: 452 -ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ E+ +D + GE+ V+G V YYK + T+E+ DGWF TG
Sbjct: 356 DDEGNELPWDGKTV---GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTG 402
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 8e-26
Identities = 69/285 (24%), Positives = 110/285 (38%), Gaps = 76/285 (26%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
TI++TSG+TG PK V+ + N + G L LT +D ++ LPL H+
Sbjct: 78 RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLLSLPLFHVSG 132
Query: 283 RAIEEVFIS--NGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
AI V S G A+ + D + + E + T VP L R+ L + S
Sbjct: 133 LAI--VMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGARWLS- 189
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
+R +L G AP+ P
Sbjct: 190 ----------------------------------------------SLRAVLLGGAPIPP 203
Query: 400 HVETFLRVVACAH--VLQGYGLTETCAGTFVSLPNEMSM--IGTVGPPVPNVDVCLESVP 455
+ L + YG+TET + +L + + +G+VG P+P ++ + +
Sbjct: 204 ---SLLEQARQRGIPLYPTYGMTETAS-QVATLKPDDFLAKLGSVGKPLPGRELRIVNPQ 259
Query: 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ GE+ V+G ++F GY + LT + DGWFHTG
Sbjct: 260 D-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTG 293
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 83/291 (28%), Positives = 123/291 (42%), Gaps = 73/291 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGV++++ N+ A + L+E+ + T+ DV + LPL H+
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNL---AANARALVEAW--RWTASDVLLHALPLHHVHG 143
Query: 283 RAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
+ N W G D + + T+F VP IY+ L
Sbjct: 144 -------LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPT----IYTRL- 191
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
L+ A+ A + RL +SG
Sbjct: 192 ------------------------LEHYEFDDAAAAAARNL-------------RLFVSG 214
Query: 394 AAPLTPHV-ETFLRVVACAH-VLQGYGLTETCAGTFVSLP-NEMSMIGTVGPPVPNVDVC 450
+A L V E + H +L+ YG+TET G +S P + GTVG P+P V+V
Sbjct: 215 SAALPVPVLERWEERTG--HTLLERYGMTET--GMALSNPLDGERRPGTVGLPLPGVEVR 270
Query: 451 LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
+ V E + L++ GE+ V+G VFS Y+ + + T E DGWF TG
Sbjct: 271 I--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTG 319
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 5e-25
Identities = 90/424 (21%), Positives = 146/424 (34%), Gaps = 102/424 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
T++++ + A++ G+ + + G N E ++ + AC LG L L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ V ++L T E S +++ R E
Sbjct: 61 NERTNQLEDLDV-----------QLLLTDSLLEEKDFQADSLDRIEAAGRYETSL----- 104
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+ F++ + I T+M+TSGTTG PK V + N G K L
Sbjct: 105 -----------SASFNM-----DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFC 319
T +D ++ LPL HI +I ++ GA + +LL E I + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLL-EMIANERVTHIS 202
Query: 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379
VP L+R LL + HN
Sbjct: 203 LVPTQLNR-------------LLDEGG---------HNE--------------------- 219
Query: 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHV--LQGYGLTETCAGTFVSLPNEMSM- 436
+R IL G + + + + YG+TETC+ + EM
Sbjct: 220 ------NLRKILLGGSAIP---APLIEEAQQYGLPIYLSYGMTETCS-QVTTATPEMLHA 269
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGW 496
VG P+ ++ ++ V E GE+ VKG+ + GY + +LT GW
Sbjct: 270 RPDVGRPLAGREIKIK-VDNKE-------GHGEIMVKGANLMKGYLYQGELTPAFEQQGW 321
Query: 497 FHTG 500
F+TG
Sbjct: 322 FNTG 325
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-24
Identities = 79/305 (25%), Positives = 117/305 (38%), Gaps = 82/305 (26%)
Query: 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271
+ L K +D I++TSG+ G PKGV++S+ N++ I + +++ L +EDV
Sbjct: 135 LRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVL 189
Query: 272 VSYLPLAHIFDRAIEEVFISNGAAIGFW----RG----------DVKLLLEDIGELKPTI 317
+ LPL H F G + G D K + E I + K TI
Sbjct: 190 LGALPLFHAF-----------GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATI 238
Query: 318 FCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377
C P L R Y + H +S
Sbjct: 239 LCGTPTFL-RGY----------------------------ARNAHPEDFSS--------- 260
Query: 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437
+RL+++GA L +L+GYG TE V+ P +
Sbjct: 261 ---------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMG-NKP 310
Query: 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--DG 495
GTVG P+P ++V + S E + G + V+G V SGY E+ T EV V DG
Sbjct: 311 GTVGRPLPGIEVRIVSPETHEELPIGEG--GLLLVRGPNVMSGYLNNEEKTSEVEVLGDG 368
Query: 496 WFHTG 500
W+ TG
Sbjct: 369 WYDTG 373
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 116/446 (26%), Positives = 191/446 (42%), Gaps = 85/446 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG---LHCVPLYD- 135
T+ +D V + N ++ GVE+ + I NCP+ +IG G + PLY
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 136 -----TLGAGAVEFIIC-----------HSGVSIAFVEEKKIPEMLKTFPKTTEH--LKT 177
L + I+C S I V +I + L FPK + ++
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLP-FPKNLLYPFVQK 169
Query: 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237
S VK + E I + W+ ++ N ++P +ND+ + YT GTTG P
Sbjct: 170 KQSNLVVKVSESETI-------HLWNS-VEKEVNTGVEVPCDPENDLALLQYTGGTTGFP 221
Query: 238 KGVMVSNENIVT-FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNG-A 294
KGVM++++N+V+ + GV+ L E+V + LP H++ A+ + I G
Sbjct: 222 KGVMLTHKNLVSNTLMGVQWLYNCKE----GEEVVLGVLPFFHVYGMTAVMNLSIMQGYK 277
Query: 295 AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354
+ + D+K++ E I + K T+F P IY L + LLK+ ++I+
Sbjct: 278 MVLIPKFDMKMVFEAIKKHKVTLFPGAPT----IYIAL----LNSPLLKE--YDIS---- 323
Query: 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414
+R +SG+APL V+ V ++
Sbjct: 324 -------------------------------SIRACISGSAPLPVEVQEKFETVTGGKLV 352
Query: 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474
+GYGLTE+ T + E + G++G P P+ + + S+ E AL GE+ VKG
Sbjct: 353 EGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGE--ALPPGEIGEIVVKG 410
Query: 475 STVFSGYYKREDLTKEVMVDGWFHTG 500
+ GY+ + + T V+ DGW HTG
Sbjct: 411 PQIMKGYWNKPEETAAVLQDGWLHTG 436
|
Length = 563 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 64/286 (22%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D I++TSGTTG PKGV ++++N++ + + + KLT D ++ +PL HI
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHIH 56
Query: 282 DRAIEEV--FISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
+ + ++ G+ + + +DI + + T + AVP
Sbjct: 57 GLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVP----------------- 99
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
T+ I LK + P R+R I S +APL P
Sbjct: 100 -----TIHQIL-------LKTAKPNPGKPPP---------------RLRFIRSASAPLPP 132
Query: 400 HV----ETFLRVVACAHVLQGYGLTETCAGTFVS-LPNEMSMIGTVGPPVPNVDVCLESV 454
V E V VL+ YG+TE + LP + G+VG P V+V ++
Sbjct: 133 AVLDRLEKRFGV----PVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEV---AI 184
Query: 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ + L GE+ ++G V +GY + +E DGWF TG
Sbjct: 185 LDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTG 230
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 89/441 (20%), Positives = 140/441 (31%), Gaps = 101/441 (22%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCG----IYGVNCPEWIIGMEACNALGLHCVPLYD 135
TY ++ V ++ NA++ + G G IY N PE +I + A +G +
Sbjct: 42 TYGDLRREVARLANALK----DLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSP 97
Query: 136 TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195
L A AV I G + T + K I +
Sbjct: 98 GLSAEAVADRIADLGPKVLI-----------ADDGTFRNGKEIALLEDAD-AVLSSVVVV 145
Query: 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GV 254
+DE ++ +++F+ +D ++YTSGTTG PKG++ S+ +
Sbjct: 146 PRLGLWYDEAVE-KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTA 204
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFIS---NGAAIGFWRG----DVKLLL 307
K L D + + I+ + S +GA + G + L
Sbjct: 205 KFHG-----DLLPGDRFWNSSDPGWIY--GLWYSVFSPLASGATTVLYDGRPFYSPERLW 257
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
E + + K TIF P L R L K
Sbjct: 258 EALEKYKVTIFGTSPTFLRR--------------LMK----------------------- 280
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGT 426
+ +R++ S PL P E F + +L YG TET G
Sbjct: 281 --------LGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGF 331
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGST--VFS 479
P G+ G P+P V VP GE+ V+ +
Sbjct: 332 IAGRPP--VKNGSSGLPLPGYAVRRVDDEGNPVPPGV---------GELVVRLPWPGMAL 380
Query: 480 GYYKREDLTKEVMVDGWFHTG 500
Y+ + KE W+ TG
Sbjct: 381 TYWNDPERYKEAYFGRWYRTG 401
|
Length = 528 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 99/433 (22%), Positives = 157/433 (36%), Gaps = 97/433 (22%)
Query: 80 TYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
TYK++++ V KV + V++ + I N E+I+ + A + VPL L
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ F + SG ++ FVE KTF ++ + +V I L
Sbjct: 89 ENELIFQLKDSGTTVLFVE--------KTFQNMALSMQKVSYVQRV-------ISITSLK 133
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
++ + K + K ++ I YTSGTTG PKG +++ EN+ F +
Sbjct: 134 --------EIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENM--FWNALNNTF 183
Query: 259 ESVNEKLTSEDVYVSYLPLAHI-----FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL 313
LT D + LPL HI F A +F + G I + + L I +
Sbjct: 184 AI---DLTMHDRSIVLLPLFHIGGIGLF--AFPTLF-AGGVIIVPRKFEPTKALSMIEKH 237
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
K T+ VP + H+ + +
Sbjct: 238 KVTVVMGVPTI-------------------------------------HQALINCSKFET 260
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQG--YGLTETCAGTFVSLP 431
VR +G AP E +R L G +G+TET F+
Sbjct: 261 TNLQS--------VRWFYNGGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFMLSE 309
Query: 432 NEMS-MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV---CVKGSTVFSGYYKREDL 487
+ +G++G PV D L + + GEV ++G V Y+ R D
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRPDA 363
Query: 488 TKEVMVDGWFHTG 500
T+E + DGW TG
Sbjct: 364 TEETIQDGWLCTG 376
|
Length = 496 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-22
Identities = 92/432 (21%), Positives = 148/432 (34%), Gaps = 124/432 (28%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV-NCPEWIIGMEACNALGLHCVPLYDTLG 138
TY E+ D ++ A+ GV G + + N E+++ AC +G P+
Sbjct: 3 TYGELDDAADRLAAALAELGVR-PGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ FI+ + + F +P+ + F
Sbjct: 62 ERELGFILRQARARVLF-----VPDEFRGFD----------------------------- 87
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ + +D+ ++YTSGTTG+PKGVM ++ ++ + L
Sbjct: 88 ------YAAMP------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL 129
Query: 259 ESVNEKLTSEDVYVSYLPLAHI--FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
LT +DV + PLAHI F +E + + R D LE I E T
Sbjct: 130 G-----LTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVT 184
Query: 317 IFC-AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
A P + D LL +A+
Sbjct: 185 FTMGATPFLAD--------------LLA--------------------AADAAGPDL--- 207
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH------VLQGYGLTETCAGTFVS 429
+R+ L G AP+ + A V++ YG+TE T +
Sbjct: 208 ---------PSLRVFLCGGAPVPR------ELARRAAEALGAKVVRAYGMTEVPLVTVGT 252
Query: 430 LPNEMSMI-GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ T G PVP V+V + V + + + GE+ V+G +F GY D T
Sbjct: 253 PDDPDDKRAATDGRPVPGVEVRI--VDDDG-NDVPPGEEGELQVRGPQLFLGYLDPPDNT 309
Query: 489 KEVMVDGWFHTG 500
+ DGWF TG
Sbjct: 310 EAFTDDGWFRTG 321
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 8e-22
Identities = 87/290 (30%), Positives = 124/290 (42%), Gaps = 66/290 (22%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+DI + YT GTTG KG M+++ N+V + L + +V ++ LPL HIF
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267
Query: 282 D-RAIEEVF---------ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
A VF ISN + G VK ELK T F A ++G
Sbjct: 268 ALTANGLVFMKIGGCNHLISNPRDM---PGFVK-------ELKKTRFTA--------FTG 309
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+N TLFN N +P D+I F +K + GG
Sbjct: 310 VN-----------TLFN-----GLLN----------TPGFDQIDFSSLKMTLGG------ 337
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451
G A E + +V V + YGLTET ++ G++G P+P+ D C+
Sbjct: 338 -GMAVQRSVAERWKQVTGLTLV-EAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACI 395
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
+ + L+ GE+C+KG V GY+KR + T +VM DGW HTG
Sbjct: 396 K---DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTG 442
|
Length = 560 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 9e-22
Identities = 92/349 (26%), Positives = 150/349 (42%), Gaps = 83/349 (23%)
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGL--AVYSWDEFLQLGENKQFDLPVKKKNDI 224
+ K T+V+F VK +R + KY L A+ S+ L G Q+ P D+
Sbjct: 157 STAK-----GTLVNFV-VKYIKRL-VPKYHLPDAI-SFRSALHKGRRMQYVKPELVPEDL 208
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF--- 281
+ YT GTTG KG M+++ N++ + K + +++ V+ LPL HIF
Sbjct: 209 AFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHP--GKELVVTALPLYHIFALT 266
Query: 282 -------DRAIEEVFISNGAAI-GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
+ + + I+N I GF + ELK F A+ +G+N
Sbjct: 267 VNCLLFIELGGQNLLITNPRDIPGF-----------VKELKKYPFTAI--------TGVN 307
Query: 334 QKISSGGLLKKTLFN-IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
TLFN + + +F L F +K S GG
Sbjct: 308 -----------TLFNALLNNEEFQELD----------------FSSLKLSVGG------- 333
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G A E ++++ ++L+GYGLTE C+ P ++ G++G PVP+ ++
Sbjct: 334 GMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLPVPSTEI-- 389
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ + + + + GE+ VKG V GY++R + T EV+ DGW TG
Sbjct: 390 -KLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATG 437
|
Length = 560 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-21
Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 76/291 (26%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ ++YTSG+TG PKGV+V++ ++V +A + L +D + + L+ F
Sbjct: 120 DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG-----LDPDDRVLQFASLS--F 172
Query: 282 DRAIEEVF--ISNGAA--------IGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
D ++EE+F + GA + L+ E T+ P +L + +
Sbjct: 173 DASVEEIFGALLAGATLVVPPEDEERDDAALLAALIA---EHPVTVLNLTPSLLALLAAA 229
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
L ++S +RL++
Sbjct: 230 LPPALAS------------------------------------------------LRLVI 241
Query: 392 SGAAPLTP-HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT----VGPPVPN 446
G LTP V+ + A ++ YG TET + +L + +G P+ N
Sbjct: 242 LGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLAN 301
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF 497
+ + ++ + GE+ + G V GY R +LT E V F
Sbjct: 302 TRLYVLD-DDLRPVPVGVV--GELYIGGPGVARGYLNRPELTAERFVPDPF 349
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 2e-20
Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES-VNEK 264
L G + + +D+ + YT GTTG KG M+++ N+V + + L+ S +NE
Sbjct: 191 LAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE- 249
Query: 265 LTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRV 324
++ ++ LPL HI+ F + A+ G+ +L+ + PR
Sbjct: 250 --GCEILIAPLPLYHIY------AFTFHCMAM-MLIGNHNILISN------------PRD 288
Query: 325 LDRIYSGLNQKISSGGLLKKTLFN-IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
L + L + SG + TLF + + F L F +K +
Sbjct: 289 LPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD----------------FSALKLTL 332
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
G + L L+ A E + V CA + +GYG+TET V+ P++ +GT+G P
Sbjct: 333 SGGMALQLATA-------ERWKEVTGCA-ICEGYGMTETSPVVSVN-PSQAIQVGTIGIP 383
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
VP+ L V + + + L GE+CVKG V GY++R + T E++ DGW TG
Sbjct: 384 VPST---LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG 438
|
Length = 562 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGT 426
SP+ DK +R+I SGAAPL+ + E + + QGYG+TET T
Sbjct: 254 SPLVDKYDL--------SSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486
++ P + G+VG VPNV+ + V E +L RGE+CVKG + GY +
Sbjct: 306 TLTPPGDEKP-GSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362
Query: 487 LTKEVMV-DGWFHTG 500
TKE + DGW HTG
Sbjct: 363 ATKETIDEDGWLHTG 377
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 4e-19
Identities = 91/432 (21%), Positives = 154/432 (35%), Gaps = 85/432 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + V + NA+R G+E + + ++ PE+ +G VP+ L
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S + + E+ + E+LK + HL+ ++ P
Sbjct: 92 DDYRYYLNDSRARVLVISEE-LWEVLKPALQKDPHLRHVIVVGGAGPGA----------- 139
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLL 258
L ++ + +D+ +Y+SG+TG PKGV+ + ++ VT A K +L
Sbjct: 140 -LSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVL 198
Query: 259 ESVNEKLTSEDVY--VSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK--LLLEDIGELK 314
+T +DV + L A+ + S GA + I K
Sbjct: 199 -----GITEDDVVFSAAKLFFAYGLGNGLYFPL-SVGATTVLMPERPTPDAVFATIERYK 252
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
PT+F VP TL+ +
Sbjct: 253 PTVFFGVP----------------------TLYA------------------------AM 266
Query: 375 VFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+ K +RL +S L + + + +L G G TE + P
Sbjct: 267 LAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA 326
Query: 434 MSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ GT G PVP +V L E V + E GE+ V+G + +GY+ R + T
Sbjct: 327 VKY-GTSGKPVPGYEVKLVDEDGEEVADGEI--------GELWVRGDSSAAGYWNRREKT 377
Query: 489 KEVMVDGWFHTG 500
+E V W TG
Sbjct: 378 RETFVGEWTRTG 389
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 5e-19
Identities = 66/290 (22%), Positives = 109/290 (37%), Gaps = 75/290 (25%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ ++YTSG+TG PKGVMV + +V +A ++ LT+ D + + + F
Sbjct: 93 DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYG-----LTAGDRVLQFASFS--F 145
Query: 282 DRAIEEVFIS--NGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
D ++ E+F +GA + D + L E + E + T+ VP +L
Sbjct: 146 DASVWEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLL---------- 195
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
+ L + +L+ +I+ G A
Sbjct: 196 --------RALLDALEPAALPSLR----------------------------LVIVGGEA 219
Query: 396 PLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTV--GPPVPNVDVC-- 450
V + + A ++ YG TET T+ + + G+V G P+ N V
Sbjct: 220 LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVL 279
Query: 451 ---LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF 497
L VP GE+ + G+ V GY R +LT E V F
Sbjct: 280 DEDLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPF 321
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-18
Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 41/287 (14%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D+ R + R P+ L + W TY E+ V +V A+ G+++ +
Sbjct: 15 DILRRSARRYPDKTALVFGDRS--------W-TYAELDAAVNRVAAALLDLGLKKGDRVA 65
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
G N + + AC G VP+ L + +I+ HSG V+ P + T
Sbjct: 66 ALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVD----PALAPT 121
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
L + RE + ++ + G + D+ + +D+ I
Sbjct: 122 AEAALALLPVDTLILSLVLGGRE----APGGWLDFADWAEAGSVAEPDVEL-ADDDLAQI 176
Query: 228 MYTSGTTGDPKGVMVSNENIV-----TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+YTSGT PKG M+++ ++ +AG ++++D+ + LPL H
Sbjct: 177 LYTSGTESLPKGAMLTHRALIAEYVSCIVAG----------DMSADDIPLHALPLYHC-- 224
Query: 283 RAIEEVFISNGAAIGFW-----RGDVKLLLEDIGELKPTIFCAVPRV 324
A +VF+ +G D +L+L I + T F A P V
Sbjct: 225 -AQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTV 270
|
Length = 523 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-17
Identities = 73/296 (24%), Positives = 113/296 (38%), Gaps = 78/296 (26%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK-CLLESVNEKLTSEDVYVSYLPLAHIF 281
+ ++TSG+TG PK V+ ++ + A + C E V V +LP H F
Sbjct: 165 TVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPP----VLVDWLPWNHTF 220
Query: 282 DRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL-----KPTIFCAVPRVLDRIYSGLNQKI 336
G F ++L + G L KP
Sbjct: 221 -----------GGNHNF-----NMVLYNGGTLYIDDGKPV-------------------- 244
Query: 337 SSGGLLKKTLFN---IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
GL ++TL N ++ + F N+ KG + + + D +++ F R+RL+
Sbjct: 245 --PGLFEETLRNLREVSPTVYF-NVPKGFEMLVDALERD----AALRRRFFKRLRLLFYA 297
Query: 394 AAPLTPHVETFLRVVACAHV------LQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVPN 446
A L V L+ +A G G TET TFV P + S G +G P P
Sbjct: 298 GAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS--GVIGLPAPG 355
Query: 447 VDVCLESVP-EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
++ L VP + EV VKG V GY++ +LT E +G++ G
Sbjct: 356 TELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 3e-17
Identities = 86/302 (28%), Positives = 133/302 (44%), Gaps = 86/302 (28%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIA----GVKCLLESVNEKLTSEDVYVSYLPL 277
+D+ + Y+SGTTG PKGVM++++ +VT +A G E+ N S+DV + LP+
Sbjct: 179 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG-----ENPNLYFHSDDVILCVLPM 233
Query: 278 AHIFDRAIEEVFISN---GAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
HI+ ++ V + GAAI ++ LLE I K TI VP +
Sbjct: 234 FHIY--SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI--------- 282
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
+ IA SP+ +K +D +R++LSG
Sbjct: 283 ------------VLAIA----------------KSPVVEK--YDL------SSIRMVLSG 306
Query: 394 AAPLTPHVETFLRVVACAHVL-QGYGLTETCAGTFVSLPNEMSMI----------GTVGP 442
AAPL +E R VL QGYG+TE AG ++ M + G+ G
Sbjct: 307 AAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLA----MCLAFAKEPFPVKSGSCGT 360
Query: 443 PVPNVDVCLESVPEMEYDALSSTPR---GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498
V N ++ + ++ + +S PR GE+C++G + GY + T + DGW H
Sbjct: 361 VVRNAELKI-----VDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLH 415
Query: 499 TG 500
TG
Sbjct: 416 TG 417
|
Length = 537 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-17
Identities = 59/278 (21%), Positives = 99/278 (35%), Gaps = 77/278 (27%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D ++YTSG+TG PKGV++++ NI F+ +L + D + + +A F
Sbjct: 99 DDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILG-----IRPGDRVLQFASIA--F 151
Query: 282 DRAIEEVFIS--NGAAIGFWRGDVKLLLEDIGE----LKPTIFCAVPRVLDRIYSGLNQK 335
D +I E+F + G + +L LED+ E L+ T+ P +L +
Sbjct: 152 DVSILEIFTTLLAGGTL--VIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL------- 202
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
E P +R ++ G
Sbjct: 203 ----------------------------DPEDVP----------------SLRTLILGGE 218
Query: 396 PLTP-HVETFLRVVACAHVLQGYGLTETC--AGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452
V+ + + +L YG TE A P + +G P+PN +
Sbjct: 219 ACPQALVDRWSKPR---RLLNTYGPTEATVTATASRLTPGKPV---NIGRPLPNYTCWVL 272
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ + GE+C+ G V GY R +LT E
Sbjct: 273 DPDLEPLVPIGAV--GELCIGGPGVARGYLNRPELTAE 308
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 4e-17
Identities = 84/305 (27%), Positives = 129/305 (42%), Gaps = 62/305 (20%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265
L G + F +D+ + YT GTTG KG + + NIV + ++ L+ EK
Sbjct: 188 LAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK 247
Query: 266 TSED--VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLED-------IGELKPT 316
D +V LPL HIF A+ + +G G +L+ + I ELK
Sbjct: 248 PRPDQLNFVCALPLYHIF--ALTVCGL-----LGMRTGGRNILIPNPRDIPGFIKELKKY 300
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
P +N TL+N +N P DK+ F
Sbjct: 301 QVHIFP--------AVN-----------TLYNAL----LNN-----------PDFDKLDF 326
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436
K+ + GG G A P E +L + C + +GYGL+ET + +
Sbjct: 327 SKLIVANGG-------GMAVQRPVAERWLEMTGC-PITEGYGLSETSPVATCNPVDATEF 378
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
GT+G P+P+ +V S+ + + + L GE+C++G V +GY+ R D T +VM DG
Sbjct: 379 SGTIGLPLPSTEV---SIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADG 435
Query: 496 WFHTG 500
+F TG
Sbjct: 436 FFRTG 440
|
Length = 557 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 7e-17
Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 59/293 (20%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVYVS 273
PV K++D+ IMY+SGTTG KGV++++ N IA V+ + S E S++VY++
Sbjct: 193 PVIKQDDVAAIMYSSGTTGASKGVVLTHRN---LIAMVELFVRFEASQYEYPGSDNVYLA 249
Query: 274 YLPLAHIFDRAIEEV-FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
LP+ HI+ ++ V +S G+ I R D +++ I K T F VP +L
Sbjct: 250 ALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL------ 303
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
L KK K V +KQ +
Sbjct: 304 -------MALTKKA-----------------KGVCGEV------LKSLKQ--------VS 325
Query: 392 SGAAPLTPH-VETFLRVVACAHVLQGYGLTETCA-GTFVSLPNEMSMIGTVGPPVPNVDV 449
GAAPL+ ++ F++ + +QGYG+TE+ A GT ++S +VG PN+
Sbjct: 326 CGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQA 385
Query: 450 CLESVPEMEYDA-LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
V + L GE+ ++G V GY T+ + DGW TG
Sbjct: 386 ---KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG 435
|
Length = 560 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 78/322 (24%), Positives = 128/322 (39%), Gaps = 102/322 (31%)
Query: 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271
K+ P K +D TI+++SG+ G+PKGVM+S+ NI ++ ++ + + N L ++DV
Sbjct: 772 KRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNI---LSNIEQISDVFN--LRNDDVI 826
Query: 272 VS--------------YLPLAHIFDRAIEEVFISN---GAAIGFWRGDVKLLLEDIGELK 314
+S +LPL I+ V+ + I KL + + +
Sbjct: 827 LSSLPFFHSFGLTVTLWLPLL----EGIKVVYHPDPTDALGIA------KL----VAKHR 872
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
TI P L R+Y L+ + +
Sbjct: 873 ATILLGTPTFL-RLY----------------------------LR--------NKKLHPL 895
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+F + RL+++GA L P V +L+GYG TET V+LP+ +
Sbjct: 896 MFASL--------RLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVL 947
Query: 435 ---------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGE---VCVKGSTVFSGYY 482
S G+VG P+P V +V ++ + P GE + + G V GY
Sbjct: 948 AADFKRQTGSKEGSVGMPLPGV-----AVRIVDPETFEELPPGEDGLILIGGPQVMKGYL 1002
Query: 483 KREDLTKEVMVD----GWFHTG 500
+ T EV+ D GW+ TG
Sbjct: 1003 GDPEKTAEVIKDIDGIGWYVTG 1024
|
Length = 1146 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 63/295 (21%), Positives = 107/295 (36%), Gaps = 72/295 (24%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ I++TSG+TG PKGV +S+ N+ +F+ + LT DV+ + P + F
Sbjct: 97 DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDF-----DLTEGDVFSNQAPFS--F 149
Query: 282 DRAIEEVF--ISNGAAIGFW------RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
D ++ ++F +++GA + + D L E + E T++ +VP
Sbjct: 150 DLSVFDLFPALASGATL--YVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASL------ 201
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
LL N +L+ F F G V L
Sbjct: 202 -------LLLSRELN---PESLPSLR---------------TF-----LFCGEV---LP- 227
Query: 394 AAPLTPHVETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEMSMIGT---VGPPVPNVDV 449
+ R A ++ YG TE T A T + E +G P P +
Sbjct: 228 ----KKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRA 283
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD----GWFHTG 500
+ + + + GE+ + G V GY + T + W+ TG
Sbjct: 284 ---LILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG 335
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 2e-16
Identities = 92/482 (19%), Positives = 152/482 (31%), Gaps = 112/482 (23%)
Query: 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93
+ APIP + +F P + + TY E+ ++
Sbjct: 217 NALAAPIPLRLTIHLLFEEQAATTP------DAVALVRGGQQL---TYAELDARANRLAR 267
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+ + GV I E ++ + A G VPL A + +I+ S ++
Sbjct: 268 LLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTL 327
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213
T HL R + +
Sbjct: 328 LL---------------TQAHL-------------RVDDVGLPGLALDDALSEIPDTDPI 359
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
+ + I+YTSG+TG PKGV + + + + L ++D ++
Sbjct: 360 PQA--LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFG-----LDADDRVLA 412
Query: 274 YLPLAHIFDRAIEEVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDR 327
L+ FD ++ E+F + GA + + D LLE + T+ VP +L
Sbjct: 413 LASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRL 470
Query: 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387
+ + A+ D I S R+
Sbjct: 471 L------------------------------------LLAALAPDLI-------SPCERL 487
Query: 388 RLILSGAAPLTP-HVETFLRVVACAHVLQ-GYGLTE-TCAGTFVSLPNEMSMIGTVGPPV 444
R +LSG L V+ L++ A A L YG TE T + E+ +G PV
Sbjct: 488 RQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPV 547
Query: 445 PNVDVC-----LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFH 498
N + L +P GE+ + G + GY R DLT E + +
Sbjct: 548 ANTQLYILDQGLRPLPLGV--------PGELYIAGLGLALGYLNRPDLTAERFIALRLYR 599
Query: 499 TG 500
TG
Sbjct: 600 TG 601
|
Length = 642 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 81/295 (27%), Positives = 125/295 (42%), Gaps = 71/295 (24%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE---KLTSE--DVYVSYLP 276
+DI + YT GTTG KG M+++ N+V + V+ L + L E +V ++ LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266
Query: 277 LAHIFDRAI----------EEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLD 326
L HI+ V I+N I G +K EL F A+
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIP---GFIK-------ELGKWRFSAL----- 311
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
GLN TLF +A + P + F +K + G
Sbjct: 312 ---LGLN-----------TLF-VA--------------LMDHPGFKDLDFSALKLTNSG- 341
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
G A + E + ++ C +++GYGLTET + E++ +GTVG PVP
Sbjct: 342 ------GTALVKATAERWEQLTGCT-IVEGYGLTETSPVASTNPYGELARLGTVGIPVPG 394
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
+ V + + + L RGE+C+KG V GY+++ + T E + +GWF TG
Sbjct: 395 TAL---KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG 446
|
Length = 562 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-15
Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 14/215 (6%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
++D G + T+ ++ +++ +R G+++ + N E+ C A G
Sbjct: 2 LIDADTGTEL--TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAG 59
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
+ + + S + F + ++ ++ + + ++ IV S
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPD-- 117
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVSNEN 246
L + E E++ P+ K+D ++Y+SGTTG PKGVM+S++N
Sbjct: 118 -------GVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKN 170
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
I+ ++ V+ L+ +S DV +++LP H +
Sbjct: 171 IIANLSQVQDTLK--GNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 6e-15
Identities = 73/297 (24%), Positives = 110/297 (37%), Gaps = 77/297 (25%)
Query: 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277
D+ +MYTSGTT PKGVM S N+ K + + LT+ + + PL
Sbjct: 145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHW-----KSIDHVIALGLTASERLLVVGPL 199
Query: 278 AHI--FDRAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLD 326
H+ FD G A+ W G D + +L I + T P +L
Sbjct: 200 YHVGAFDLP--------GIAV-LWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLS 250
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
R+ P D+ D + GG
Sbjct: 251 RVL-------------------------------------TVPDRDRFDLDSLAWCIGGG 273
Query: 387 VRLILSGAAPLTPH--VETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPP 443
+ TP + F RV A + YGLTETC+G T + E+ IG+ G
Sbjct: 274 EK---------TPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRA 324
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ +V++ + + L +GE+C++G V GY+K + T E WF +G
Sbjct: 325 LAHVEI---RIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSG 378
|
Length = 497 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-15
Identities = 89/434 (20%), Positives = 147/434 (33%), Gaps = 116/434 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + ++ +R GV + PE ++ + A G VPL A
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ F++ SG + +E ++ L +
Sbjct: 74 ERLAFMLEDSGARVLLTDES--------------------------LAPLARADQLPLVI 107
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV------TFIAG 253
+ + P +D+ +MYTSG+TG PKGV V + +V +IA
Sbjct: 108 LEEELDAEDAGP---PAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYIA- 163
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGFWRGDVKLLLEDIG 311
L +D ++ PL+ FD + E++ + NG +L+L D
Sbjct: 164 -----------LDPDDRFLQLSPLS--FDASTFEIWGALLNGG---------RLVLIDKE 201
Query: 312 ELK-PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
L P + R++ Q ++ L LFN V+ P
Sbjct: 202 TLLDPD---RLARLIAE------QGVTV-LWLTAALFNQL--------------VDEDP- 236
Query: 371 ADKIVFDKVKQSFGGRVRLILSG--AAPLTPHVETFLRVVACAHVLQGYGLTE--TCAGT 426
++ G +R +L G HV L ++ GYG TE T +
Sbjct: 237 ----------EALAG-LRQLLVGGDVLSP-AHVRRVLAACPGLRLINGYGPTENTTFSTC 284
Query: 427 FVSLPNEMSMIGTV--GPPVPNVDVCLESVPEMEYDALSSTPR----GEVCVKGSTVFSG 480
V + + ++ G P+PN V + D GE+ V G + G
Sbjct: 285 HVITRLDEA-ADSIPIGRPIPNTTVYI-------LDEEGQPVPIGVPGELYVGGDGLALG 336
Query: 481 YYKREDLTKEVMVD 494
Y R +LT E V
Sbjct: 337 YLNRPELTAERFVP 350
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 413 VLQGYGLTETCAGTFVSLPNEMSM--IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470
V Q YG+TET + V+L E ++ +G+ G P+ ++ +E + + GE+
Sbjct: 281 VYQSYGMTETAS-QIVTLSPEDALTKLGSAGKPLFPCELKIEK----DGVVVPPFEEGEI 335
Query: 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
VKG V GY RED T+E DGWF TG
Sbjct: 336 VVKGPNVTKGYLNREDATRETFQDGWFKTG 365
|
Length = 483 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 70/300 (23%), Positives = 104/300 (34%), Gaps = 85/300 (28%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI-- 280
D+ +T GTTG PK S+ N V A + LL + DV ++ LPL H+
Sbjct: 3 DLAAYFHTGGTTGAPKLARHSHRNEVA-NAWMAALLSGLGP----GDVLLNGLPLFHVGG 57
Query: 281 --------FDRAIEEVFISNGAAIGFWRGD--VKLLLEDIGELKPTIFCAVPRVLDRIYS 330
R V + +R V + + + T+ AVP VL
Sbjct: 58 AIVTGLAPLARGATVVLPT----PSGFRNPAVVANFWKIVERYRVTLLSAVPTVL----- 108
Query: 331 GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLI 390
LL+ P+ D + +R
Sbjct: 109 --------AALLQ------------------------VPLGDADI---------SSLRYA 127
Query: 391 LSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP--NV 447
L+GAAPL V F V V++GYG+TE + ++ G+VG +P V
Sbjct: 128 LTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186
Query: 448 DVCLESVPEMEYDALSSTPR-------GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
V + DA + R G + ++G VF GY + DGW +TG
Sbjct: 187 RV-------AKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTG 239
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 68/301 (22%), Positives = 115/301 (38%), Gaps = 56/301 (18%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262
+ + ++ L V + +DI +YTSGTTG PKGVM + + +TF
Sbjct: 72 QDLEHILDDSGAALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAE----AFAREL 127
Query: 263 EKLTSEDVYVSYLPLAHIFDRAIEEVF-ISNGAAIGFWRG--DVKLLLEDIGELKPTIFC 319
L D S L + +F + +GA+ G + +L+ + +PT+
Sbjct: 128 LGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLF 187
Query: 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379
VP + Y L + SG + F +++ EA P + ++
Sbjct: 188 GVPAL----YRAL---LESGAG---------SAPLFRSVRLCVSAGEALPAG---LAERW 228
Query: 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439
++ G + L G G TE F+S + GT
Sbjct: 229 AEATGIEI--------------------------LDGIGSTEV-LHIFISNRPGAARPGT 261
Query: 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHT 499
G PVP + L V E + + T G++ V+G ++ GY+ + T+ + DGW T
Sbjct: 262 TGRPVPGYEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRT 318
Query: 500 G 500
G
Sbjct: 319 G 319
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 8e-14
Identities = 72/296 (24%), Positives = 116/296 (39%), Gaps = 76/296 (25%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH-- 279
+ I ++TSG+TG PK V+ ++ + A + L ++ V V +LP H
Sbjct: 209 DTIAKFLFTSGSTGLPKAVINTHRMLC---ANQQMLAQTFPFLAEEPPVLVDWLPWNHTF 265
Query: 280 ----IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
+ NG + I + KPT P
Sbjct: 266 GGNHNLGIVLY-----NGGTL------------YIDDGKPT-----P------------- 290
Query: 336 ISSGGLLKKTLFN---IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
G +TL N I+ + F N+ KG + + + D +++ F R++L+
Sbjct: 291 ----GGFDETLRNLREISPTVYF-NVPKGWEMLVPALERD----AALRRRFFSRLKLLFY 341
Query: 393 GAAPLTPHVETFLRVVACAHV------LQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVP 445
A L+ V L VA A + G G+TET + TF + P + G +G P P
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRA--GNIGLPAP 399
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTG 500
+V L VP + EV VKG V GY++ +LT E + G++ +G
Sbjct: 400 GCEVKL--VP---VGG-----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG 445
|
Length = 614 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 2e-13
Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 54/308 (17%)
Query: 201 SWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+W E L+ + D + D+C + ++SGTTG KGVM+++ N+V A + L
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLV---ANLCSSL 217
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
SV ++ + V + +P HI+ G R K+++ EL+ F
Sbjct: 218 FSVGPEMIGQVVTLGLIPFFHIYGIT--------GICCATLRNKGKVVVMSRFELR--TF 267
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
+ + + Q++S ++ + N+ +PI ++ K
Sbjct: 268 ---------LNALITQEVSFAPIVPPIILNLV----------------KNPIVEEFDLSK 302
Query: 379 VKQSFGGRVRLILSGAAPLTPHVET-FLRVVACAHVLQGYGLTE-TCAGTFVSLPNEMSM 436
+K ++ I++ AAPL P + T F V + YGLTE +C P +
Sbjct: 303 LK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHG 356
Query: 437 IG---TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY-KREDLTKEVM 492
I +VG +PN++V P+ +TP GE+CV+ V GYY +E+ + +
Sbjct: 357 IAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTID 414
Query: 493 VDGWFHTG 500
DGW HTG
Sbjct: 415 EDGWLHTG 422
|
Length = 546 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY + + V+ + + +R G+ + IY E + M G VP+ L A
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
V I+ V + V + ++L L+T++ P E G
Sbjct: 87 EQVAHILADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGD--PAHASEGHP-GEEP 142
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
SW + L LG+ +D+ I+YTSG+TG PKGV++S+ N+V V LE
Sbjct: 143 ASWPKLLALGD--ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200
Query: 260 SVNEKLTSEDVYVSYLPLAHIFD 282
+D ++ LPL+ FD
Sbjct: 201 -----NRPDDRLLAVLPLS--FD 216
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 4e-13
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 46/154 (29%)
Query: 385 GRVRLILSGAAPLTPHV-ETFLRVVA----CAHVLQ-GYGLTETCAGTFVSL----PNEM 434
+R I++ + FL ++A A ++ +G++ETC+G S +
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348
Query: 435 SMIGT----------------------VGPPVPNVDV-----CLESVPEMEYDALSSTPR 467
+ +G P+P V + +PE E
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGE--------V 400
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
G + V+G TV SGYY+ + E DGWF TG
Sbjct: 401 GRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTG 434
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 95/439 (21%), Positives = 150/439 (34%), Gaps = 129/439 (29%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKC-GIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y++++ V + +R GV K + N +W+I AC G+ C+P+
Sbjct: 4 SYQQLWQEVDLLAEQLRALGV----KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
A + ++ +G ++S A
Sbjct: 60 AQQTQHLLNDAGAD------------------------LLISDDP--DAASALHT--PFA 91
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
D ++ L + PV+ I YTSG+TG PKGV +S + T + L
Sbjct: 92 TLGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALETV---AQSLA 145
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAI---------EEVFISNGAAIGFWRG----DVKL 305
E++ + ++ LPLA + + V + A +G G D
Sbjct: 146 EAIAI--LEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAELGL-SGSSGLDPAQ 202
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
+ + +P VP++L L + G L + S +F
Sbjct: 203 FVAALSRWQPHSLILVPQLL----MALVAAVEQGPLPPE-------SLRF---------- 241
Query: 366 EASPIADKIVFDKVKQSFGGRV--RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423
+A V G RV L+ A P V +GYGL+E C
Sbjct: 242 ----VA-------VG---GARVSPSLLQRARALGLP-------------VYEGYGLSE-C 273
Query: 424 AGTFVSL--PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
A + VSL P G+VG P+P+V V S GE+ V+GS GY
Sbjct: 274 A-SVVSLNTPGA-DRPGSVGKPLPHVQV-------------SIANDGEILVRGSL-MLGY 317
Query: 482 YKREDLTKEVMVDGWFHTG 500
T D W+ TG
Sbjct: 318 LGEPPAT-----DDWWATG 331
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
RL++SG+A L V L + ++ YG+TET E G VG P+
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-GWVGLPL 299
Query: 445 PNVDVCL--ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
V+ L E + +D + GE+ V+G T+F GY R D T DGWF TG
Sbjct: 300 AGVETRLVDEDGGPVPHDGETV---GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG 355
|
Length = 471 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV 447
+++ G A L P V L+ + +GYGLTET T + P+ +G PV
Sbjct: 202 KVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKP-QCLGIPVFGT 260
Query: 448 D--VC-LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTG 500
D V E+ E L GE+ V+G VF GY+ R + T E + +F TG
Sbjct: 261 DARVIDPETGEE-----LPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTG 315
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 52/260 (20%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D F V R P+ L R +A +Y T++++ D V ++ + GV+ + G
Sbjct: 22 DAFDATVARFPDREALVVRH----QALRY---TWRQLADAVDRLARGLLALGVQPGDRVG 74
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS-------------IA 154
I+ NC EW++ A +G V + A +E+ + SGV A
Sbjct: 75 IWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHA 134
Query: 155 FVEEKKIPEMLKTFPKTTE-----HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG 209
++E +P + + P L+ +VS + P G W E G
Sbjct: 135 MLQEL-LPGLAEGQPGALACERLPELRGVVSLAPAPPP--------GFLA--WHELQARG 183
Query: 210 EN-KQFDLPVKK----KNDICTIMYTSGTTGDPKGVMVSNENIVT---FIAGVKCLLESV 261
E + L ++ ++D I YTSGTTG PKG +S+ NI+ F+A ES+
Sbjct: 184 ETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA------ESL 237
Query: 262 NEKLTSEDVYVSYLPLAHIF 281
LT D +PL H F
Sbjct: 238 G--LTEHDRLCVPVPLYHCF 255
|
Length = 558 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 73/307 (23%), Positives = 105/307 (34%), Gaps = 109/307 (35%)
Query: 229 YTSGTTGDPKGV--------MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
YTSGTTG+PKGV + + NI+ + + VY+ LP+ H
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNILAW-------------GMPKHPVYLWTLPMFHC 235
Query: 281 ----FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
F + G + + D KL+ + I E T +C P VL
Sbjct: 236 NGWCFPWTVA---ARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLS---------- 282
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
L N +P + D V +++GAAP
Sbjct: 283 --------ALIN-------------------APAEWRAGID-------HPVHAMVAGAAP 308
Query: 397 LTPHVETFLRVVACA-----HVLQGYGLTET------CA--GTFVSLPNE-----MSMIG 438
P V+A + YGLTET CA + +LP + + G
Sbjct: 309 --P-----AAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361
Query: 439 TVGPPVPNVDVCLESVPEMEYDALSSTPR-----GEVCVKGSTVFSGYYKREDLTKEVMV 493
P E V ++ D + P GE+ +G+ V GY K T+E
Sbjct: 362 VRYPL-------QEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA 414
Query: 494 DGWFHTG 500
GWFHTG
Sbjct: 415 GGWFHTG 421
|
Length = 545 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 63/313 (20%), Positives = 107/313 (34%), Gaps = 77/313 (24%)
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+S ++ L +LP D+ + GTTG PK + ++ + ++ + E
Sbjct: 122 FSGFDYAALARELLEELP-----DVALFQLSGGTTGLPKLIPRTHND---YLYSARASAE 173
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRA---IEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
+ L VY++ LP AH F + + ++ G + + I K T
Sbjct: 174 AC--GLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVT 231
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
VP +L+ +EA+
Sbjct: 232 HTALVPALLNLW------------------------------------LEAAEWDQ---A 252
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEM 434
D +R+I G APL+P + + C + Q +G+ E T + P ++
Sbjct: 253 DL------SSLRVIQVGGAPLSPELARRVEERLGCP-LQQVFGMAEGLVNYTRLDDPPDV 305
Query: 435 SMIGTVGPPVPN------VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
M T G P+ VD E VP E GE+ +G GYY+ +
Sbjct: 306 IM-RTQGRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHN 356
Query: 489 KEVMV-DGWFHTG 500
DG++ TG
Sbjct: 357 ARAFTDDGFYRTG 369
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 67/298 (22%), Positives = 111/298 (37%), Gaps = 84/298 (28%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D+ I+YTSG+TG+PKGVM+S+ N+ + LE LT +D ++ LP + FD
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFS--FD 55
Query: 283 ----------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
R + + + A DV L+ + + + T F VP ++
Sbjct: 56 YGLSQLLTAFRVGGTLVLESRFAFP---RDV---LKHLAKERITGFAGVP----TTWA-- 103
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
LL+ F +L+ L +
Sbjct: 104 -------QLLRLDPL---AREDFPSLR----------------------------YLTNA 125
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM--SMIGTVGPPVPNVDVC 450
G A + R A + YGLTE T+ LP E ++G +PNV++
Sbjct: 126 GGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTY--LPPEELDRRPDSIGKAIPNVELW 183
Query: 451 LESVPEMEYDALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMV------DGWFHTG 500
+ ++ D P GE+ +G+ V GY+ + T E + + +TG
Sbjct: 184 V-----VDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTG 236
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 70/298 (23%), Positives = 115/298 (38%), Gaps = 56/298 (18%)
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
G + P +D+ + YT GTTG PKG M+++ N+ + ++ + + T
Sbjct: 179 GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYD--VWGKPSRATRG 236
Query: 269 DVY--VSYLPLAHIFDRAIEEVFIS---NGAAIGF-WRGDVKLLLEDIGELKPTIFCAVP 322
DV + LPL HI+ A+ + + G I R DV + DI E + T+F VP
Sbjct: 237 DVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVP 294
Query: 323 RVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQS 382
T++ IA + P +K +
Sbjct: 295 ----------------------TMW-IA--------------LANDPSLEKRDLSSLATI 317
Query: 383 FGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442
G APL V F + G+G+TETC+ P G++G
Sbjct: 318 GSG--------GAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGL 369
Query: 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P +++ + S+ + L GE+ ++G V GY+ R + + E V F TG
Sbjct: 370 MLPGIELDVVSLDDPT-KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTG 426
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-11
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 386 RVRLILSGAAPLTP--HVETFLRVVACAH-VLQGYGLTETCAGTFVSLPNEMSMI-GTVG 441
+RL +SG+APL H E R H +L+ YG+TET T S P + GTVG
Sbjct: 270 HMRLFISGSAPLLAETHREFQERT---GHAILERYGMTETNMNT--SNPYDGERRAGTVG 324
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLTKEVM-VDGWF 497
P+P V S+ + + + P GE+ VKG VF GY++ + T E DG+F
Sbjct: 325 FPLPGV-----SLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFF 379
Query: 498 HTG 500
TG
Sbjct: 380 ITG 382
|
Length = 504 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 63/299 (21%), Positives = 102/299 (34%), Gaps = 89/299 (29%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS--------- 273
D + +TSGTTG PK V+ ++ + + L+ L +D++ +
Sbjct: 82 DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLD-----LRPDDLHWTIADPGWAKG 136
Query: 274 -----YLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVL 325
+ P GAA+ + G D + LE + T FCA P
Sbjct: 137 AWSSLFAPWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY 183
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ L Q +SS Y F
Sbjct: 184 RML---LQQDLSS--------------YDF-----------------------------S 197
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
+R ++S PL P V + R + GYG TET + P G++G P P
Sbjct: 198 HLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGL-LVANFPGMEVKPGSMGRPAP 256
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGST----VFSGYYKREDLTKEVMVDGWFHTG 500
V ++ + E + L G++ V+ +F GY K + T+ + W+ TG
Sbjct: 257 GYRV---AIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTG 312
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
D I+YTSGTTG PKGV++++ A L + L +DV ++ LPL HI
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQ--LLFAAR---LAARLLGLRPDDVLLTPLPLFHI 134
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 386 RVRLILSGAAPLTPHVETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
+R + P R V +++GYG+TET P + + G+ G P
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERFGVK----LVEGYGMTETGVPIIA--PGDPAPPGSCGRP 250
Query: 444 VPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDG 495
P V+V + VP E GE+ V+ +F GYY + T + +G
Sbjct: 251 RPGVEVRIVDEDGREVPPGE--------VGELVVRPRRPWAMFKGYYGMPEATAKAWRNG 302
Query: 496 WFHTG 500
WFHTG
Sbjct: 303 WFHTG 307
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 94/453 (20%), Positives = 149/453 (32%), Gaps = 94/453 (20%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ V + N + + GV N PE + A G+ P+ L
Sbjct: 60 TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGIAN-PINPLLEP 118
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT------------EHLKTIVSFS---KV 184
+ ++ +G + L FP T L+T+V +
Sbjct: 119 EQIAELLRAAGAKVLVT--------LGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYL 170
Query: 185 KPEQREEI----EKYGLAVYSWDEFL-QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
+R + K + +D L + ++ F +D+ +T GTTG PK
Sbjct: 171 PGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKL 230
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGF 298
++ N V LL L D LPL H+ ++ GA +
Sbjct: 231 AQHTHGNEVANAWLGALLL-----GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVL 285
Query: 299 -----WRGD--VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351
+RG + + + + VP V Y+ L Q
Sbjct: 286 ATPQGYRGPGVIANFWKIVERYRINFLSGVPTV----YAALLQV---------------- 325
Query: 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVAC 410
P+ + +R L GAAPL V F
Sbjct: 326 -----------------PVDGHDI---------SSLRYALCGAAPLPVEVFRRFEAATG- 358
Query: 411 AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470
+++GYGLTE + V+ P+ IG+VG +P V + + + L EV
Sbjct: 359 VRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDD-AGRYLRDCAVDEV 417
Query: 471 ---CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
C+ G VFSGY + + DGW +TG
Sbjct: 418 GVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTG 450
|
Length = 632 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 71/311 (22%), Positives = 110/311 (35%), Gaps = 68/311 (21%)
Query: 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261
W + L + + V +D+ +++TSGT+GDPK V ++ + AGV +
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGV-----ML 184
Query: 262 NEK--LTSEDV-YVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
++ L +DV YVS +PL F SN A + W +
Sbjct: 185 AQRFGLGPDDVCYVS-MPL-----------FHSN-AVMAGW--------------AVALA 217
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
L R +S +SG L + Y + + K +V A+P +
Sbjct: 218 AGASIALRRKFS------ASGFLPDVRRYGATY---ANYVGKPLSYVLATPERPDDADNP 268
Query: 379 VKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438
++ +G AP + F R C V+ G+G TE P+ G
Sbjct: 269 LRIVYGNE-------GAP--GDIARFARRFGC-VVVDGFGSTEGGVA-ITRTPDTPP--G 315
Query: 439 TVGPPVPNVDV----CLESVPEMEYDALSSTPR----GE-VCVKGSTVFSGYYKREDLTK 489
+GP P V + P E GE V G F GYY +
Sbjct: 316 ALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA 375
Query: 490 EVMVDGWFHTG 500
E M G + +G
Sbjct: 376 ERMRGGVYWSG 386
|
Length = 529 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 91/405 (22%), Positives = 147/405 (36%), Gaps = 100/405 (24%)
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTI 178
M A + +G +P L A + + I +G+ I + E +PE + +
Sbjct: 89 MLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLL 148
Query: 179 VSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLP------VKKKNDICTIMYTSG 232
V V E W +F + EN D +DI + +TSG
Sbjct: 149 V---LVGDPVPE----------GWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSG 195
Query: 233 TTGDPKGVMVSNEN------IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
TTG PK MV +++ IVT A ++ LT D ++ + I
Sbjct: 196 TTGMPK--MVEHDHTYPLGHIVT--AKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIA 251
Query: 287 E--VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
VF+ + + + D K LLE I + T FCA P + R + + +S
Sbjct: 252 GAAVFVYD-----YDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL--IKEDLSK------ 297
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
++L A + VF+ K+ G ++
Sbjct: 298 -----------YDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLM---------------- 330
Query: 405 LRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL 462
+G+G TET TF P G++G P P D+ + ++ D
Sbjct: 331 ----------EGFGQTETTLTIATF---PWMEPKPGSMGKPSPGYDIDI-----IDPDGK 372
Query: 463 SSTP--RGEVCVKGST-----VFSGYYKREDLTKEVMVDGWFHTG 500
S GE+ ++ S +F GYY+ + T EV DG++HTG
Sbjct: 373 SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTG 417
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+DI + YTSG+TG PKGVMV++ N+ +A ++ + + L +DV VS+LPL H
Sbjct: 148 DDIAFLQYTSGSTGAPKGVMVTHGNL---LANLRAIARAF--GLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 5e-10
Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 80 TYKEVYDLVIKVVNAI-RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y+E+ + ++ + + CGV + + +Y N P+++I A VP+
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIV-SFSKVKPEQ-------- 188
+ + SG +A V + P++ H+ IV +S P +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHV--IVAQYSDYLPAEPEIAVPAW 154
Query: 189 -REEIEKYGLA---VYSWDEFLQLGENKQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVS 243
R E LA V +W E L G P +D+ + YTSGTTG PKG M +
Sbjct: 155 LRAEPPLQALAPGGVVAWKEALAAGLAP---PPHTAGPDDLAVLPYTSGTTGVPKGCMHT 211
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+ ++ G + T E V ++ LPL H+
Sbjct: 212 HRTVMANAVGS-----VLWSNSTPESVVLAVLPLFHV 243
|
Length = 546 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)
Query: 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ E+++ V+ V + GV++ + + N E I+ + A LG V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ + + + V ++ E K E+
Sbjct: 88 REELLWQLDDAEVKCLITDD------------DFEAKLIPGISVKFAELMNGPKEEA--- 132
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
E + +FDL +++ TIMYTSGTTG PKGV+ + N + + V L
Sbjct: 133 -----EIQE-----EFDL-----DEVATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175
Query: 259 ESVNEKLTSEDVYVSYLPLAHI 280
N LT +D +++ +P+ HI
Sbjct: 176 ---NLGLTEDDCWLAAVPIFHI 194
|
Length = 483 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 7/62 (11%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPL 277
+DI I ++SG+TG+PKGV+++++N++T I ++ ++TSEDV++S++PL
Sbjct: 103 SLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA------EITSEDVFLSWMPL 156
Query: 278 AH 279
H
Sbjct: 157 TH 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 71/292 (24%), Positives = 105/292 (35%), Gaps = 69/292 (23%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL--AHI 280
D IM+T GTTG PK V ++ NI + + + L+ D V+ +PL H
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR-----LSPRDATVAVMPLYHGHG 231
Query: 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
A+ S GA + RG +DI + T + AVP +
Sbjct: 232 LIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTI-------------- 277
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR----VRLILSGA 394
H +I+ ++ GR +R I S +
Sbjct: 278 -------------------------H--------QILLERAATEPSGRKPAALRFIRSCS 304
Query: 395 APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG-TVGPPVPNVDVCLES 453
APLT L+ A V+ +G+TE T ++ IG T P V V +
Sbjct: 305 APLTAETAQALQTEFAAPVVCAFGMTEA---THQVTTTQIEGIGQTENPVVSTGLVGRST 361
Query: 454 VPEMEY---DALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
++ D L GEV ++G+TV GY +T DGW TG
Sbjct: 362 GAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTG 413
|
Length = 534 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPLAH 279
+D+ ++YTSG+TG PKGV VS+ +V F L S+ + + D ++ ++
Sbjct: 93 DDLAYVIYTSGSTGKPKGVEVSHRALVNF-------LLSMARRPGLGASDRLLAVTTIS- 144
Query: 280 IFDRAIEEVFI--SNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVP 322
FD ++ E+ + +GA + D + L I + + TI A P
Sbjct: 145 -FDISVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATP 192
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 2e-09
Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 63/237 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV---PLYDT 136
TY+E + V + + G+E+ + GI+ N PEW++ A +G V P Y
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 137 LGAGAVEFIICHSGVS-IAFVEEKK-----------IPEM---------LKTFPKTTEHL 175
+E+ + SG + + K PE+ P L
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLP----EL 157
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--------KQFDLPVKKKNDICTI 227
+ ++ K + ++DE L LG +Q L +D I
Sbjct: 158 RRVIFLGDEKHP----------GMLNFDELLALGRAVDDAELAARQATL---DPDDPINI 204
Query: 228 MYTSGTTGDPKGVMVSNENIVT---FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
YTSGTTG PKG +++ NI+ FI + + KLT ED +PL H F
Sbjct: 205 QYTSGTTGFPKGATLTHRNILNNGYFIG--EAM------KLTEEDRLCIPVPLYHCF 253
|
Length = 559 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-09
Identities = 66/308 (21%), Positives = 98/308 (31%), Gaps = 96/308 (31%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH--- 279
D +YTSGTTG PK ++S+ + A L L +DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLG-----LLKPDDVLYLCLPLYHSNA 136
Query: 280 -IFDRAIEEVFISNGAAI---------GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
+ ++ GA++ FW D+ T F V + +
Sbjct: 137 LTVGWS---SALAAGASLALRRKFSASQFWP--------DVRRYGATAFQYVGELCRYL- 184
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
LNQ + H L+K P ++D+ K+ FG
Sbjct: 185 --LNQPEKPDD-------------RDHPLRKIIG-NGLRPD----IWDEFKERFG----- 219
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP------ 443
+++ YG TE F++L N G VG
Sbjct: 220 --------------------VPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLPPAAIA 255
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEV---CVKGSTV--FSGYYKREDLTKEVMV----- 493
V DV E P GEV + + F GY E K+++
Sbjct: 256 VVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKK 315
Query: 494 -DGWFHTG 500
D +F+TG
Sbjct: 316 GDAYFNTG 323
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 401 VETFLRVVA---CAHVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCL---- 451
+E RV+ + V YG+TET + + ++ + TVG +P+++V +
Sbjct: 329 IEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPE 388
Query: 452 --ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
E+VP E +GE+C +G +V GY+ + T E + DGW HTG
Sbjct: 389 TGETVPRGE--------QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432
|
Length = 559 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 90/430 (20%), Positives = 155/430 (36%), Gaps = 118/430 (27%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGK-CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y E+ + +V N + GV+ + G+ PE ++ + A +G VPL+ G
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAFG 60
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
A+E+ + HSG K +V+ R
Sbjct: 61 PKAIEYRLGHSGA------------------------KVVVT----NAANRG-------- 84
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ D +D+ MYTSGTTG PKGV V + F A ++ +
Sbjct: 85 --------------KLD------DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAI 124
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
+ L +DV + +A G A G + L I T+F
Sbjct: 125 D-----LRDDDV---FWNIA------------DPGWAYGLYYAITGPLAMGI----TTVF 160
Query: 319 CAVPRVLDRIYSGL-NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377
+ Y L ++ N A S ++ + A+ AD
Sbjct: 161 LEGGFTAENTYDVLERLGVT----------NFAGS------PTAYRMLMAAG-ADAAARI 203
Query: 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437
K+K +R+ S PL P V + + + YG TET G V + ++
Sbjct: 204 KLK------LRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHE 255
Query: 438 ---GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST----VFSGYYKREDLTKE 490
G++G P+P + +V + + L+ G++ + ++ FSGY+ + T E
Sbjct: 256 VRAGSMGLPLPGYRI---AVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAE 312
Query: 491 VMVDGWFHTG 500
++ W+ TG
Sbjct: 313 LIAGRWYVTG 322
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 69/305 (22%), Positives = 105/305 (34%), Gaps = 83/305 (27%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI- 280
+D I +TSGTTG PKGV +S+ ++ V+ L + +DVY+ PL HI
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALI-----VQSLAKIAIVGYGEDDVYLHTAPLCHIG 226
Query: 281 -FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL-DRIYSGLNQKISS 338
A+ + + + + D K L+ I + T VP ++ D I
Sbjct: 227 GLSSALAMLMVG-ACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWK 285
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
+ + N G +L A L
Sbjct: 286 VFPSVRKILNGG---------------------------------GSLSSRLLPDAKKLF 312
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAG-TFVSL--PNEMSMIGT---------------- 439
P A + YG+TE C+ TF++L P S T
Sbjct: 313 P----------NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQ 362
Query: 440 ---VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
VG P P+V E++ S+ G + +G V GY+ + T V+ DG
Sbjct: 363 GVCVGKPAPHV--------ELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDG 414
Query: 496 WFHTG 500
W TG
Sbjct: 415 WLDTG 419
|
Length = 563 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 30/172 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+++ + ++ I+ + ++ +YG P ++ G +P+ DT
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DT--- 82
Query: 140 GAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
I + E PE++ T E V + E+ E G
Sbjct: 83 --------SIPSERIEMIIEAAGPELVIH---TAELSIDAVGTQIITLSALEQAETSGGP 131
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
V FD VK +D I+YTSG+TG+PKGV +S++N+V+F
Sbjct: 132 V-------------SFDHAVKG-DDNYYIIYTSGSTGNPKGVQISHDNLVSF 169
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 13/213 (6%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
I + G +Y E+ + + + N + G+ + K ++ NCPE+I +G
Sbjct: 27 IFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
VP+ L +I+ +S S+ + P + + L+ I +
Sbjct: 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRV 142
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
+ V S+ + P +D I++TSGTT PKGV++++ N+
Sbjct: 143 ALPADD----GVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL 198
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
AG + L +DVY++ +P HI
Sbjct: 199 R--FAG---YYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 417 YGLTET-CAGTFVS--LPNEMSMIGT---VGPPVPNVD--VCLESVPEMEYDALSSTP-- 466
+G+TET TF + ++ ++ VG PVP + +C +++ P
Sbjct: 360 WGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKIC-------DFETGELLPLG 412
Query: 467 -RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ V+ ++ GY+ + + T E + DGW HTG
Sbjct: 413 AEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG 447
|
Length = 567 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 385 GRVRLILSGAAPLTPHVETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMI----G 438
+ + +G AP H + + ++ G+G++E AGT + + +I G
Sbjct: 252 RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAG 306
Query: 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWF 497
G P P V V + D + P GE+ ++G + GY++R T DGWF
Sbjct: 307 AAGIPTPTVQ--TRVVDDQGNDCPAGVP-GELLLRGPNLSPGYWRRPQATARAFTGDGWF 363
Query: 498 HTG 500
TG
Sbjct: 364 RTG 366
|
Length = 488 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 64/291 (21%), Positives = 103/291 (35%), Gaps = 94/291 (32%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED------VYVSYLPLAHI 280
++TSG+TG PK V+ + + IA E+L + V + ++P H
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQ--------EQLRPREPDPPPPVSLDWMPWNHT 276
Query: 281 FDRAIEEVFISNGAAIG---FWRGDVKLL-------LEDIGELKPTIFCAVPRVLDRIYS 330
NG G + D K L + ++ E+ PT++ VP
Sbjct: 277 MGGNA----NFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVP-------- 324
Query: 331 GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV-KQSFGGRVRL 389
Y+ +A+ + D ++SF +RL
Sbjct: 325 ------------------AGYAM----------------LAEAMEKDDALRRSFFKNLRL 350
Query: 390 ILSGAAPLTPHVETFLRVVACAH------VLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
+ G A L+ + ++ +A GYG TET A T + +G +G P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409
Query: 444 VPNVDVCLESVPEMEYDALSSTPRG---EVCVKGSTVFSGYYKREDLTKEV 491
+P V++ L P G EV VKG V GY+K +LT
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAA 447
|
Length = 624 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 390 ILSGAAPLTPHVETFLRVVA---CAHVLQGYGLTETCAGTFVS-----LPNEMSMIGTVG 441
I++GA +E RV+ A V YG+TET + + L + +G
Sbjct: 323 IMAGA---PCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQ 379
Query: 442 PPVPN--VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498
P + VD +VP E GE+C +G +V GY+ + T E + DGW H
Sbjct: 380 PHLEVKVVDPDGATVPRGEI--------GELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431
Query: 499 TG 500
TG
Sbjct: 432 TG 433
|
Length = 558 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 389 LILSGAAPLTP-----HVETFLRVVACAHVLQGYGLTETCAGTFVS-------LPNEMSM 436
+ GA+P++P +E F + A Q YG TE A ++ P++
Sbjct: 285 TVYYGASPMSPVRLAEAIERFGPIFA-----QYYGQTE--APMVITYLRKRDHDPDDPKR 337
Query: 437 IGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
+ + G P P + V L V + E GE+CV+G V GY+ R + T E
Sbjct: 338 LTSCGRPTPGLRVALLDEDGREVAQGEV--------GEICVRGPLVMDGYWNRPEETAEA 389
Query: 492 MVDGWFHTG 500
DGW HTG
Sbjct: 390 FRDGWLHTG 398
|
Length = 524 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL--PNEMSMIGTVGPP 443
+R L AP+ + R A ++ +G+TE A T L P+E + T G P
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERA-STTDGCP 371
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P V+V V + + L + G + V+G + F GY KR L DGWF TG
Sbjct: 372 LPGVEV---RVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG-TDADGWFDTG 424
|
Length = 547 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
T++E+ D V + A+ GV + I +N E++ + A N LG VP+ L
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ F++ G + E P + T + L + V + + +V
Sbjct: 104 PEIAFLVSDCGAHVVVTEAALAP--VATAVRDIVPLLSTVVVAGGSSDD---------SV 152
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDI-CTIMYTSGTTGDPKGVMVSNENIV----TFIAGV 254
+++ L E PV ND IMYTSGTTG PKG ++++ N+ T +
Sbjct: 153 LGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRT- 209
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHI 280
N + DV +PL HI
Sbjct: 210 -------NGADINSDVGFVGVPLFHI 228
|
Length = 542 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 415 QGYGLTETCAGTFVSLPNEM--------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTP 466
Q +GL E G LP + + IGT G ++V + + E L
Sbjct: 310 QYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEV---QIQDDEGRELPPGE 365
Query: 467 RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+CV G VF+GYY + + DGWF TG
Sbjct: 366 TGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTG 399
|
Length = 528 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 66 REIVDGKAGKYVWK------TYKEVYDLVIKVVNAIRTCGVEERGK---CGIYGVNCPEW 116
R +V+G+ GK + +Y E+ V ++ A+R GV+ + + GV+ P
Sbjct: 12 RNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIA 71
Query: 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---EMLKTFPKTTE 173
+G A A G+ V L L A +++ S + FV + +P L P
Sbjct: 72 FLG--AIRA-GIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP---- 124
Query: 174 HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGT 233
HL+ V + + + + LA E L E++QF + +D +Y+SG+
Sbjct: 125 HLEHRVVVGRPEAGEVQ------LA-----ELLA-TESEQFKPAATQADDPAFWLYSSGS 172
Query: 234 TGDPKGVM 241
TG PKGV+
Sbjct: 173 TGMPKGVV 180
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 60/288 (20%), Positives = 97/288 (33%), Gaps = 88/288 (30%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV VS+ ++V + E LT +D + ++ + FD + E
Sbjct: 4699 VIYTSGSTGRPKGVAVSHGSLVNHLHATGERYE-----LTPDDRVLQFMSFS--FDGSHE 4751
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
++ + NGA++ W D + L +I E + T+ P
Sbjct: 4752 GLYHPLINGASVVIRDDSLW--DPERLYAEIHEHRVTVLVFPP----------------- 4792
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
Y + H + P +R+ G +
Sbjct: 4793 ----------VYLQQLAE----HAERDGEP---------------PSLRVYCFGGEAVAQ 4823
Query: 400 -HVETFLRVVACAHVLQGYGLTET--------CAGTFVSLPNEMSMIGTVGPPVPNV--- 447
+ R + ++ GYG TET M +G P+ N
Sbjct: 4824 ASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMP----IGTPLGNRSGY 4879
Query: 448 --DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493
D L +P GE+ + G V GY +R LT E V
Sbjct: 4880 VLDGQLNPLP--------VGVAGELYLGGEGVARGYLERPALTAERFV 4919
|
Length = 5163 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 68/307 (22%), Positives = 118/307 (38%), Gaps = 70/307 (22%)
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
++ +D P +N ++ YTSGTTG+PKG + S+ + V G L +++ L++
Sbjct: 163 AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYG-AALPDAMG--LSAR 219
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVL 325
D + +P+ H+ + GA + G D K L E I + T VP V
Sbjct: 220 DAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEAERVTFSAGVPTV- 277
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ GL + GL +F L+
Sbjct: 278 ---WLGLLNHMREAGL------------RFSTLR-------------------------- 296
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GTFVSLPNE---------MS 435
R ++ G+A + TF V+ +G+TE GT L +
Sbjct: 297 --RTVIGGSACPPAMIRTFEDEYG-VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRK 353
Query: 436 MIGTVGPPVPNVDVCL--ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493
++ G + VD+ + + E+ +D + G++ V+G V Y++ + +V
Sbjct: 354 LLEKQGRVIYGVDMKIVGDDGRELPWDGKAF---GDLQVRGPWVIDRYFRGDA---SPLV 407
Query: 494 DGWFHTG 500
DGWF TG
Sbjct: 408 DGWFPTG 414
|
Length = 539 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK--L 265
E+ P +D+ +++TSG+TG+PKGVM+++ V I VN + +
Sbjct: 112 AAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTI-------LDVNRRFGV 164
Query: 266 TSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFC 319
D ++ L FD ++ ++F +S GAA+ R D E + T++
Sbjct: 165 GPADRVLALSALH--FDLSVYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWN 222
Query: 320 AVPRVLD 326
+VP ++D
Sbjct: 223 SVPALMD 229
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 27/178 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPLYDTLG 138
TY ++ D + + + A G+ + +N PE + A GL L+
Sbjct: 39 TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQ-LAGLRRTALHPL-- 95
Query: 139 AGAVE---FIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR---EEI 192
G+++ +++ +G+S V+ E LK +++ V P+
Sbjct: 96 -GSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPV-PDGVDLLAAA 153
Query: 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
K+G A LP DI + YT GTTG PKGVM ++ +I T
Sbjct: 154 AKFGPA-----------PLVAAALP----PDIAGLAYTGGTTGKPKGVMGTHRSIATM 196
|
Length = 524 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 33/197 (16%)
Query: 61 RMLGQREIVDGK-AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
R+ G RE+V G V TY +++D +KV A+ G++ + N
Sbjct: 21 RIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNT------ 74
Query: 120 MEACNALGLHCVPLYDTLGAGAV-------------EFIICHSGVSIAFVEEKKIPEMLK 166
H Y +G GA+ +II H+ + + +P + K
Sbjct: 75 -------WRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEK 127
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT 226
K ++ V + + K +A W + F +N
Sbjct: 128 IADKL-PSVERYVVLTD-AAHMPQTTLKNAVAYEEWIA----EADGDFAWKTFDENTAAG 181
Query: 227 IMYTSGTTGDPKGVMVS 243
+ YTSGTTGDPKGV+ S
Sbjct: 182 MCYTSGTTGDPKGVLYS 198
|
Length = 542 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 71/299 (23%), Positives = 113/299 (37%), Gaps = 70/299 (23%)
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
F + K D+ I++TSGT PKGV +++ N+ +A + L+ + K +DV +S
Sbjct: 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANL---LANQRACLKFFSPK--EDDVMMS 229
Query: 274 YLPLAHIFD----------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPR 323
+LP H + + VF N K ++E I E K T + P
Sbjct: 230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPL-------YPKKIVEMIDEAKVTFLGSTPV 282
Query: 324 VLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
D I L L F + F + ++ + ++F
Sbjct: 283 FFDYI---LKTAKKQESCLPSLRFVVIGGDAFKD----------------SLYQEALKTF 323
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
PH++ LR QGYG TE ++ N VG P
Sbjct: 324 ---------------PHIQ--LR--------QGYGTTECSPVITINTVNSPKHESCVGMP 358
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTG 500
+ +DV + V E +SS G V +G+++FSGY + V + G W+ TG
Sbjct: 359 IRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415
|
Length = 539 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 53/156 (33%)
Query: 387 VRLILSGAAPLTPHV-ETFLRVVACAH-----VLQGYGLTETCAGTFVSLP--------- 431
VRLI +GA P++ + E FL +A + YGL E VS P
Sbjct: 230 VRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLA--VSFPKPGEPFKTV 287
Query: 432 ---------------------NEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSST 465
+ +S + VG P+ ++ + E +P+
Sbjct: 288 CLDRNHLKVGVKIIEIDPKNSDAISFV-EVGSPIDGCEIRIVDDAGEVLPDRTI------ 340
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
G + +KG V SGYY + TK+ + DGW TG
Sbjct: 341 --GHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTG 374
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 80 TYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ + + +A+ G+ + G NC E + + A +G PL L
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 139 AGAVEFIICHSGVSIAFVEE---KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK- 194
+ II H+ + + +++ E+LK P V F
Sbjct: 100 NDQIVHIINHAEDEVIVADPRLAEQLGEILKECP-CVRA----VVFIGPSDADSAAAHMP 154
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
G+ VYS++ L G + +D P + I Y++GTTG PKGV+ S
Sbjct: 155 EGIKVYSYEALLD-GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYS 202
|
Length = 576 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 22/216 (10%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
+VD Y TY + ++ N + G+E + E+ I AC +G
Sbjct: 42 VVDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98
Query: 128 LHCVPLYDTLGAGAVEFII--CHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSK 183
VPL + + +++ C + + A K+ + P L+ IV K
Sbjct: 99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDK 158
Query: 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
+ P S + + E + +++ +++TSGT G PKGVM++
Sbjct: 159 LAPATSSL---------SLSQIIADYEPLTTAITTHG-DELAAVLFTSGTEGLPKGVMLT 208
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ NI +A + +N LT +DV++ PL H
Sbjct: 209 HNNI---LASERAYCARLN--LTWQDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 222 NDICTIMYTSGTTGDPKGVM-VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+D+ ++YTSGTTG+PKGVM +N T +A + E + L ++DV + P+AH
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTAN----TLMANIVPYAERL--GLGADDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVAC----AHVLQGYGLTETCAGTFVSLPNE-MSMIGTV 440
+R++ GAAP + T LR +A A +L +G TE T + L + + +G+V
Sbjct: 291 ALRVLSWGAAPASD---TLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 441 GPPVPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
G +P VD + VP E GE+ + T+ SGY+ + T E G
Sbjct: 348 GKVIPTVAARVVDENMNDVPVGEV--------GEIVYRAPTLMSGYWNNPEATAEAFAGG 399
Query: 496 WFHTG 500
WFH+G
Sbjct: 400 WFHSG 404
|
Length = 542 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF-VEEKKIPEMLK 166
++G PE + G +P+ + A +E II + S+ EE
Sbjct: 57 VFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEE-------- 108
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT 226
P + I ++ ++I G FD VK +D
Sbjct: 109 -LPLEILGIPVI------TLDELKDI-------------FATGNPYDFDHAVKG-DDNYY 147
Query: 227 IMYTSGTTGDPKGVMVSNENIVTF 250
I++TSGTTG PKGV +S++N+V+F
Sbjct: 148 IIFTSGTTGKPKGVQISHDNLVSF 171
|
Length = 503 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 47/118 (39%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL---------TS 267
P + +DI + YTSG+T PKGV VS+ N+V NE+L
Sbjct: 161 PALQPDDIAFLQYTSGSTALPKGVQVSHGNLVA------------NEQLIRHGFGIDLNP 208
Query: 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL 325
+DV VS+LPL H D+ L IG L IF VP VL
Sbjct: 209 DDVIVSWLPLYH----------------------DMGL----IGGLLQPIFSGVPCVL 240
|
Length = 4334 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
L + +D ++ TSG+TG PK V++++ NI+ AG VN T +DV +++
Sbjct: 160 PLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGT----VQVNG-FTPDDVSLNW 214
Query: 275 LPLAHI 280
+PL H+
Sbjct: 215 MPLDHV 220
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 35/130 (26%)
Query: 387 VRLILSGAAPLTPHV-ETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT----- 439
+R ++S AP+ V E F ++ A +L YG TE +LP +S I +
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE-------ALP--ISSIESREILF 340
Query: 440 -------------VGPPVPNVDVCLESVPEMEYDALSSTPR------GEVCVKGSTVFSG 480
VG PV V+V + ++ + R GE+ V G V
Sbjct: 341 ATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRS 400
Query: 481 YYKREDLTKE 490
YY R + T+
Sbjct: 401 YYNRPEATRL 410
|
Length = 552 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 18/236 (7%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D F AV P+ L G ++ +Y+E+ V ++ + GV
Sbjct: 26 DHFDAAVANCPDKPALTAYRDGHGAVRRF---SYRELDCRVDRIAVGLARLGVGRGDVVS 82
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----KIPE 163
N E+ AC +G PL + F++ H+ + V
Sbjct: 83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAA 142
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
M + L+ +V + + + L D+ P +D
Sbjct: 143 MARELQSKLPALRQVVVIDGDGDDSFDRV----LMTPERDDTPDAAAILAGPRP--SPDD 196
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ ++YTSGTTG+PKGVM + T + + E + +L DV + P+AH
Sbjct: 197 VTQLIYTSGTTGEPKGVMHTAN---TLFSNIHPYAERL--ELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVD------VCLESVPEMEYDALSSTPR 467
++GYGLTET A T + P + + +G P VD LE +P E
Sbjct: 334 VEGYGLTETMAQTHSN-PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGE--------V 384
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV--DG--WFHTG 500
GE+ V G VF GY+ R + T E + DG +F TG
Sbjct: 385 GEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421
|
Length = 546 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 387 VRLILSGAAPL---TPHV--ETF-LRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGT 439
+R + +GA + T E F +R+ L+GYG+TET ++ P M + GT
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTETAPVIALNTP--MHNKAGT 960
Query: 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL-TKEVMVDGWFH 498
VG +P ++ LE VP ++ G + V+G V GY + E+ E DGW+
Sbjct: 961 VGRLLPGIEYRLEPVPGIDEG-------GRLFVRGPNVMLGYLRAENPGVLEPPADGWYD 1013
Query: 499 TG 500
TG
Sbjct: 1014 TG 1015
|
Length = 1140 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV-GPPVPN 446
L AP+ + + A ++ +G+TE A T + + T G P+P
Sbjct: 313 FTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPG 372
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
V+V V + LS G + V+G + F GY KR L +GWF TG
Sbjct: 373 VEV---KVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS-TDAEGWFDTG 422
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 94/409 (22%), Positives = 151/409 (36%), Gaps = 106/409 (25%)
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---EMLKTFPKTTEH-----LKTIV 179
++CV + L A + F++ HS + V+++ E LK + + L ++
Sbjct: 97 VNCVNI--RLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVI 154
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
P+ + G Y ++FL+ G+ + P + + YTSGTT PKG
Sbjct: 155 GDPTCDPKSLQYALGKGAIEY--EKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKG 212
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI----FDRAIEEVFISNGAA 295
V++ + A + L ++ + VY+ LP+ H F + + G
Sbjct: 213 VVLHHRG-----AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAAL---CGTN 264
Query: 296 IGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355
I + K + I T FCA P VL+ T+ N
Sbjct: 265 ICLRQVTAKAIYSAIANYGVTHFCAAPVVLN------------------TIVN------- 299
Query: 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-----ETFLRVVAC 410
+P ++ I+ V ++ +GAAP P V E RV
Sbjct: 300 ------------APKSETIL------PLPRVVHVMTAGAAP-PPSVLFAMSEKGFRV--- 337
Query: 411 AHVLQGYGLTETCAGTFV--------SLPNE----------MSMIGTVGPPVPNVDV-CL 451
H YGL+ET + V SLP E + IG G V VD +
Sbjct: 338 THT---YGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV--VDTKTM 392
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ VP GE+ ++G+ V GY K +E +GWFH+G
Sbjct: 393 KPVPA------DGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSG 435
|
Length = 567 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH-----VLQGYGLTETCAGTFVSLPNEMS-MIGTVG 441
R L G + +V +L YG TE+ V+L + +S + T G
Sbjct: 305 RFFLCGGTTIPK------KVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDG 358
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
V++ V + L GE +G VF GY +LT + +GW+++G
Sbjct: 359 YAAAGVEI---KVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415
|
Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
++ + N + ++YTSG+TG PKGV +S+ + ++ + L+ L ++D +
Sbjct: 650 EVALDPDN-LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ-----LAADDSMLMV 703
Query: 275 LPLAHIFDRAIEEVF 289
A FD + E+F
Sbjct: 704 STFA--FDLGVTELF 716
|
Length = 3956 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 72/291 (24%), Positives = 106/291 (36%), Gaps = 65/291 (22%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
D + +D+ I +TSGTTG PKG M + +I +A V + T +DV++
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDI---LAICDAFPRHVLQP-TPDDVFIGS 195
Query: 275 LPLAHIFDRAIEEVF-ISNGA-AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
PLA F +F + GA A+ + LLL+ I E + TI
Sbjct: 196 PPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATI--------------- 240
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
LF +P A + + KVK +R +S
Sbjct: 241 -------------LF-------------------TAPTAYRAMLIKVKAFDISSLRKCVS 268
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452
L V ++ G G TE F+S E + G G PVP + +
Sbjct: 269 AGETLPAKVWQDWYERTGLKIIDGIGATEMLH-IFISANEENAKPGATGKPVPGYEARIV 327
Query: 453 SVPEMEYDALSSTPRGEV---CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
D + PRGE V+G T Y ++ +E + DGW TG
Sbjct: 328 D------DQGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDGWNVTG 370
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
I+YTSGTTG PKGV++S I A + L E+ + T++DV V LPL H+
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIA---ADLDALAEA--WQWTADDVLVHGLPLFHV 181
|
Length = 471 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLES-VPEMEYDALSSTPRGEVCV 472
L YG+TET G P + ++G P C E+ + + L + GE+C+
Sbjct: 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRP----GFCYEAEIRDDHNRPLPAGEIGEICI 371
Query: 473 KG---STVFSGYYKREDLTKEVM-VDGWFHTG 500
KG T+F YY T +V+ DGW HTG
Sbjct: 372 KGVPGKTIFKEYYLDPKATAKVLEADGWLHTG 403
|
Length = 517 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 415 QGYGLTETCAGTFVSLPNEMSMI-----GTVGPPVPNVDVCLESV----PEMEYDALSST 465
Q YGL+ET T + LP + I G VG P P VDV L + P A S
Sbjct: 315 QVYGLSET-GCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAP-GAGPSA 372
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
G + +K GY+ + T EV++DGW +TG
Sbjct: 373 SFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTG 407
|
Length = 540 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 39/254 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ +L + +R GV + ++ NCP++ I LG VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQ-----REEIE 193
+ + + +G + ++ P + + +T+ H+ S + V P + + +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIV-TSLADVLPAEPTLPLPDSLR 178
Query: 194 KYGLAVYSWDEFLQL--GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
LA + L LP + + + YT GTTG PKG + ++V +
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMV-YT 237
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIG 311
A V + V++S+LP FW + E+ G
Sbjct: 238 AAAAYA---VAVVGGEDSVFLSFLPE--------------------FW-----IAGENFG 269
Query: 312 ELKPTIFCAVPRVL 325
L P +F VL
Sbjct: 270 LLFP-LFSGATLVL 282
|
Length = 567 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 441 GPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
G +P ++ + +PE G +CV+G ++ SGY++ E+ + DG
Sbjct: 388 GKALPGHEIEIRNEAGMPLPERVV--------GHICVRGPSLMSGYFRDEESQDVLAADG 439
Query: 496 WFHTG 500
W TG
Sbjct: 440 WLDTG 444
|
Length = 579 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 48/188 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCV------- 131
TY+E++ V + N +++ GV++ + IY PE I M AC +G +H V
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149
Query: 132 -PLYDTLGAGAVEFIICHSGVSIAFVEEKKIP------EMLKTFPKTTEHLKTIVSFSKV 184
L D + + +I K IP E L+ P + EH +V V
Sbjct: 150 EALADRINDAGAKLVITADE---GLRGGKVIPLKAIVDEALEKCPVSVEH--VLV----V 200
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT-----------IMYTSGT 233
+ G V+ W + + K + C I+YTSG+
Sbjct: 201 RRTGNPVPWVEGRDVW-WHDL------------MAKASAYCEPEPMDSEDPLFILYTSGS 247
Query: 234 TGDPKGVM 241
TG PKGV+
Sbjct: 248 TGKPKGVL 255
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 25/88 (28%)
Query: 416 GYGLTET----CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVC 471
GYGLTE CA L VG P+P +V L GE+
Sbjct: 270 GYGLTEMASTVCAKRADGLAG-------VGSPLPGREVKLVD--------------GEIW 308
Query: 472 VKGSTVFSGYYKREDLTKEVMVDGWFHT 499
++G+++ GY+++ L V +GWF T
Sbjct: 309 LRGASLALGYWRQGQLVPLVNDEGWFAT 336
|
Length = 458 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ I YTSGTTG PKG M ++ ++ + LT + V +++LPL H+
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLA-----TAAASAAWSGLTPDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 74/323 (22%), Positives = 116/323 (35%), Gaps = 99/323 (30%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE-DVYVSYLPLAHI 280
+D+ + TSG+TG PK V +++ N+ A + + + + E DV VS+LPL H
Sbjct: 152 DDLALMQLTSGSTGSPKAVQITHGNLY---ANAEAMFVAA--EFDVETDVMVSWLPLFH- 205
Query: 281 FD------------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRI 328
D E V ++ + F R D L E I + + T+ A P
Sbjct: 206 -DMGMVGFLTVPMYFGAELVKVT---PMDFLR-DPLLWAELISKYRGTMTAA-P------ 253
Query: 329 YSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388
N AY+ L++ K FD +R
Sbjct: 254 -------------------NFAYALLARRLRRQAKPGA---------FDL------SSLR 279
Query: 389 LILSGAAPLTPH-VETFLRVVA-----CAHVLQGYGLTE-TCAGTFVSLPNEMSM----- 436
L+GA P+ P VE L A +L YG+ E T A +F + +
Sbjct: 280 FALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDA 339
Query: 437 -------------------IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV 477
+ T+GPP+P ++V V + + L G + ++G +V
Sbjct: 340 DLLAALRRAVPATKGNTRRLATLGPPLPGLEV---RVVDEDGQVLPPRGVGVIELRGESV 396
Query: 478 FSGYYKREDLTKEVMVDGWFHTG 500
GY + DGW TG
Sbjct: 397 TPGYLTMDGFIPAQDADGWLDTG 419
|
Length = 545 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDV----CLESVPEM 457
F R C V GYG +E A V P G++G P V + L
Sbjct: 281 AEFSRRFGC-QVEDGYGSSEG-AVIVVREPGTPP--GSIGRGAPGVAIYNPETLTECAVA 336
Query: 458 EYDAL-----SSTPRGE-VCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+DA + GE V G+ F GYY + T E M G + +G
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSG 385
|
Length = 540 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 438 GTVGPPVPNV-----DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G+ G PV NV D V E GE+ + + GY+ + T E
Sbjct: 341 GSAGRPVLNVETRVVDDDGNDVAPGEV--------GEIVHRSPQLMLGYWDDPEKTAEAF 392
Query: 493 VDGWFHTG 500
GWFH+G
Sbjct: 393 RGGWFHSG 400
|
Length = 523 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 71/308 (23%), Positives = 106/308 (34%), Gaps = 78/308 (25%)
Query: 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277
+ K +D I++TSG+TG PKGV+ ++ I ++ L + D ++ P
Sbjct: 81 IPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-----IREGDRDLAAFPP 135
Query: 278 AHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
F G A+G + I + PT P LD
Sbjct: 136 -----------FALFGPALG--------VTTVIPAMDPT----APAALD----------- 161
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR----VRLILSG 393
L + + I S F SP K V ++ G +R +LS
Sbjct: 162 -PAKLAQAIREIGASCVF-----------GSPALLKNVARYCEE--NGIQLPSLRRVLSA 207
Query: 394 AAPLTPHV-ETFLRVVA-CAHVLQGYGLTETCAGTFVSL------PNEMSMIGT---VGP 442
AP+ P + F+ + A + YG TE + E G VG
Sbjct: 208 GAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAGVCVGH 267
Query: 443 PVPNVDVC---LESVPEMEYDALSSTPR---GEVCVKGSTVFSGYYKREDLTKEVMVD-- 494
PVP +DV ++ P +D P GE+ V G V YY R + TK +
Sbjct: 268 PVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDG 327
Query: 495 --GWFHTG 500
W G
Sbjct: 328 NRIWHRMG 335
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 82/433 (18%), Positives = 159/433 (36%), Gaps = 51/433 (11%)
Query: 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC 98
P+ G+ S +++ +V R+ R LGQ ++G+ W TY V ++ + +
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS----ESGESEWLTYGTVDARARELGSGLLAL 477
Query: 99 GVEERGKCGIYGVNCP---EWIIGMEACNALGLHCVPLYDTLGAG-AVEFIICHSGVSIA 154
GV + GV+C +I AC G +PL +G G + +I + +
Sbjct: 478 GV---RPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVV 531
Query: 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK-YGLAVYSWDEFLQLGENKQ 213
F + + +L + L+T+V E + + + + ++ Q G
Sbjct: 532 FADRNSVAAILTC---RSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCP 588
Query: 214 FDLPVKKKNDICTIMY----TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED 269
L D TS + V V++ +++ I+ + ++ V +
Sbjct: 589 VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTL--VMTGVLPSSFKKH 646
Query: 270 VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
+ V + P A +F+R ++G+A+ D L + +PTI A P +
Sbjct: 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSR 704
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
L++ + LF A+ + + + H S + I F ++ GG V
Sbjct: 705 LQLSRANERYSAVYSWLFERAFQLR---SRLINIHRRDSSLLRFIFFRATQELLGGCVEK 761
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV------GPP 443
I V+ + + L E + +V E+ + + G P
Sbjct: 762 I----------------VLCVSEESTSFSLLEHISVCYVPCLREVFFLPSEGVFCVDGTP 805
Query: 444 VPNVDVCLESVPE 456
P++ V LE E
Sbjct: 806 APSLQVDLEPFDE 818
|
Length = 1452 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTV 440
+ R+R + SG L + + R V + YG TE + G++
Sbjct: 204 RYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPGSM 262
Query: 441 GPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVK--GSTVFSGYYKREDLTKEVMV 493
G PVP +V + VP E GE+ VK +F GY+ + T
Sbjct: 263 GKPVPGHEVAVVDDAGRPVPPGE--------VGEIAVKRPDPVMFLGYWNNPEATAAKFA 314
Query: 494 DGWFHTG 500
W TG
Sbjct: 315 GDWLLTG 321
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 43/187 (22%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG---LHCVPLYDT 136
++ E+ V ++ A+R GV+ + Y N PE +I M A ++G C P
Sbjct: 88 SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144
Query: 137 LGAGAV---------EFIICHSGVSIA---FVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
G AV + + G +KI E++K P L+ +V +
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYL 200
Query: 185 KPEQREEIEKYGLAVYSWD---------EFLQLGENKQFDLPVKKKNDICTIMYTSGTTG 235
+ + K+ W EF +L FD P+ I+Y+SGTTG
Sbjct: 201 SSDAQPAALKFSALTLLWSLAGDRAAPLEFERLP----FDHPL-------WILYSSGTTG 249
Query: 236 DPKGVMV 242
PK +V
Sbjct: 250 LPKC-IV 255
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 213 QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272
+ +D I++TSG+ G PKGV++S+ N++ A V ++ + ED
Sbjct: 784 LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID-----FSPEDKVF 838
Query: 273 SYLPLAHIF 281
+ LP+ H F
Sbjct: 839 NALPVFHSF 847
|
Length = 1140 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 385 GRVRL-ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
GR L L G L + L + A + YG TET + + T+G P
Sbjct: 205 GRESLTALCGGEALPRDLAERL-LSTGAELWNMYGPTETTIWSTCARVTAADGPVTIGRP 263
Query: 444 VPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH 498
+ N +D L+ VP GE+ + G V GY R +LT E V F
Sbjct: 264 IANTQVYVLDEDLQPVPPGVP--------GELYIGGDGVARGYLGRPELTAERFVPDPFD 315
Query: 499 TG 500
Sbjct: 316 DP 317
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 56/285 (19%), Positives = 96/285 (33%), Gaps = 74/285 (25%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV + + + + ++ L D + + + FD +E
Sbjct: 3201 VIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS--FDVFVE 3253
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
E+F + +GA + WR D LL+E
Sbjct: 3254 ELFWPLMSGARVVLAGPEDWR-DPALLVE------------------------------- 3281
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
L+ ++ ++Y P + ++ ++ I+ G L
Sbjct: 3282 -LINSEGVDVLHAY---------------PSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325
Query: 400 HVETFLRVVACAHVLQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
+ +V A + YG TE T E +G P+ N +
Sbjct: 3326 --DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD----- 3378
Query: 459 YDALSSTPRG---EVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+L P G E+ + G + GY+ R LT E V F G
Sbjct: 3379 -GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPG 3422
|
Length = 5163 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
D+F + P+ L G R + TY E+ + ++ + + G+
Sbjct: 7 DLFEAVADAVPDRVALVCGDRRL-----------TYAELEERANRLAHYLIAQGLGPGDH 55
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165
GIY N E++ M V + + +++ S E + P +
Sbjct: 56 VGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVA 115
Query: 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDIC 225
+ P+ L+T+V V+ ++ + +++ L G ++ D + +D+
Sbjct: 116 EVLPRLP-KLRTLVV---VEDGSGNDLLPGAV---DYEDALAAGSPER-DFGERSPDDL- 166
Query: 226 TIMYTSGTTGDPKGVMVSNENI 247
++YT GTTG PKGVM E+I
Sbjct: 167 YLLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC--LLESVNEKLTSEDVYVSYLPLAHI 280
D I+YTSGTTG KGV + + G LE + ++DV + LPL H
Sbjct: 181 DTAAILYTSGTTGPSKGVCCPHAQF--YWWGRNSAEDLE-----IGADDVLYTTLPLFHT 233
Query: 281 -----FDRAI----EEVFISNGAAIGFW 299
F +A+ V +A GFW
Sbjct: 234 NALNAFFQALLAGATYVLEPRFSASGFW 261
|
Length = 542 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV--PLYDTL 137
TYKE+ +L K N ++ GVE+ + I+ PE + AL + PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLG--ALKNGAIVGPLFEAF 132
Query: 138 GAGAVEFIICHSGVSIAFVEEKKI---PEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIE 193
AV + + E K + P +L+ P LK ++ + E EE
Sbjct: 133 MEEAV-----RDRLEDS--EAKVLITTPALLERKPADDLPSLKHVL----LVGEDVEEGP 181
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
++ ++ + +FD+ + D + YTSG+TG PKGV+
Sbjct: 182 GT----LDFNALME-QASDEFDIEWTDREDGAILHYTSGSTGKPKGVL 224
|
Length = 570 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFI 251
++YTSG+TG PKGV + + N +
Sbjct: 110 VIYTSGSTGRPKGVAIEHRNAAALL 134
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + V ++ + GV + + NCPE++ A N LG VP+ L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 140 GAVEFIICHSGVSIAFVEE 158
+ I+ HSG + V+
Sbjct: 65 EELAHILDHSGARLIVVDT 83
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
L V S F LP +DI + Y+SG+T P+GV++++ ++ +
Sbjct: 149 NPLLHVLSHAWFK-ALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRA 207
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAH 279
+ K+ D VS+LP H
Sbjct: 208 ISH----DGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESVNEK 264
L L + D + + YTSG+T P GVMVS+ N I F +
Sbjct: 144 LDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV 203
Query: 265 LTSEDVYVSYLPLAH 279
+ VS+LP H
Sbjct: 204 PPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 213 QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
F+ + +D+ I+YTSGTTG KG M+S+ N
Sbjct: 147 DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGN 180
|
Length = 504 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 227 IMYTSGTTGDPKGVMVSNENI----VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
I++TSGT+G PKGVM+S N+ F V ++ + ++ P+ HI
Sbjct: 140 ILFTSGTSGQPKGVMLSERNLQQTAHNF---------GVLGRVDAHSSFLCDAPMFHI 188
|
Length = 488 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
L+ G F + +D+ I++TSG+TG PKGV
Sbjct: 155 ATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
|
Length = 552 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 412 HVLQGYGLTETCAGTFV--------SLPNEMSM-----IGTVGPPVPNVDV----CLESV 454
V+ YGLTE LP M G + +VDV ESV
Sbjct: 326 QVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESV 385
Query: 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
P GE+ +KGS++ GY K T E GW +TG
Sbjct: 386 PR------DGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG 425
|
Length = 579 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
+R I S PL P V + V + + TET A + P G++G P+
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 445 PNVDVCLESVPEMEYDALSSTPR----GEVCVKGS--TVFSGYYKREDLTKEVMVDGWFH 498
P ++ +V E + D L+ GE+ +K ++F GY E+ VDGW+
Sbjct: 267 PGIEA---AVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDGWYL 323
Query: 499 TG 500
TG
Sbjct: 324 TG 325
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 45/185 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+YD V ++ +R GV + + IY PE +I M L C +
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAM-------LACARI------ 121
Query: 140 GAVEFIICHSGVSIAF--------VEEKKIPEMLKTF-----PKTTEHLKTIV----SFS 182
GA+ HS V F +++ K P+++ T P K ++ S
Sbjct: 122 GAI-----HSVVFGGFASKELASRIDDAK-PKLIVTASFGIEPGRVVPYKPLLDKALELS 175
Query: 183 KVKPE-----QREEIEKYGLAVYS--WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTG 235
+ KP R ++ W E + +PV+ D I+YTSGTTG
Sbjct: 176 QHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARPVDC-VPVES-TDPLYILYTSGTTG 233
Query: 236 DPKGV 240
PKGV
Sbjct: 234 KPKGV 238
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 227 IMYTSGTTGDPKGVMVSNENIV 248
I++TSG+TG PKGVMV IV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
R+R +S PL P V ++ + GYG TET A + P + G++G P+P
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTA-MIGNSPGQKVKPGSMGRPLP 258
Query: 446 NVDVCLESVPEMEYDALSSTPR---GEVCVKGST----VFSGYYKREDLTKEVMVDGWFH 498
V L D GE+ + + GY + T G++
Sbjct: 259 GYRVVL-------LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYR 311
Query: 499 TG 500
TG
Sbjct: 312 TG 313
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ E+ + + N ++ GV + + PE + C LG +P LG
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKT-----FPKTTEH 174
+ + + +G + T PK H
Sbjct: 61 PKDIRYRLERAGARAIVTSADDPALLYFTSGTTGLPKMVLH 101
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 58/282 (20%), Positives = 96/282 (34%), Gaps = 53/282 (18%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
++ ++YTSG+TG PKGV VS+ +V E L+ D + ++ + FD
Sbjct: 2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYE-----LSPADCELQFMSFS--FD 2199
Query: 283 RAIEEVFIS--NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
A E+ F NGA + R D L D +L + +LD
Sbjct: 2200 GAHEQWFHPLLNGARV-LIRDDE---LWDPEQLYDEMERHGVTILD-------------- 2241
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
F Y + H + P A ++ G A
Sbjct: 2242 ------FPPVYLQQLAE----HAERDGRPPAVRVY--------------CFGGEAVPAAS 2277
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN-VDVCLESVPEMEY 459
+ + ++ GYG TE + G P+ + + + +
Sbjct: 2278 LRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADL 2337
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
+ L+ GE+ + G + GY R LT E V D + +G
Sbjct: 2338 NLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379
|
Length = 5163 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 39/241 (16%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
DVF A R+P+ L + I +Y E+ + + GV +
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSI-----------SYAELNARANRYAHWAAARGVGKGDV 89
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---P 162
+ N PE++ LG V L +T GAV + HS + V+ K +
Sbjct: 90 VALLMENRPEYLAAWLGLAKLGA-VVALLNTQQRGAV---LAHS---LNLVDAKHLIVGE 142
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENK-QFDLPVKKK 221
E+++ F + L + ++ E +++ + +
Sbjct: 143 ELVEAFEEARADLARPPRLWVAGGDTLDDPE-------GYEDLAAAAAGAPTTNPASRSG 195
Query: 222 ---NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
D +YTSGTTG PK ++S+ + + G LL +LT +DV LPL
Sbjct: 196 VTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLPLY 250
Query: 279 H 279
H
Sbjct: 251 H 251
|
Length = 600 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGV 240
V K+D I+YTSGTTG PKG
Sbjct: 95 RVDLKDDPAMIIYTSGTTGKPKGT 118
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+D ++YTSGTTG PKG +S + V S + L D + +PL H
Sbjct: 87 DDPAALIYTSGTTGLPKGCAISWRRTL-----VTSNPLSHDLNLQFPDRTYTCMPLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
++ D I++TSG+ G PKGV+ S+++++ + +K + + T D ++S LPL
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSALPLF 416
Query: 279 HIF 281
H F
Sbjct: 417 HSF 419
|
Length = 718 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTVGPPV 444
R+R +++GA L + + +L+GYG+TE CA VS+ M+ GTVG +
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE-CA-PVVSINVPMAAKPGTVGRIL 537
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE----------DLTKEVMVD 494
P +D L SVP +E G + +KG + +GY + E + + M
Sbjct: 538 PGMDARLLSVPGIEQG-------GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMER 590
Query: 495 GWFHTG 500
GW+ TG
Sbjct: 591 GWYDTG 596
|
Length = 718 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.95 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.92 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.86 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.85 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.74 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.73 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.66 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.43 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.75 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 96.42 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 95.89 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 95.46 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 95.34 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 94.92 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 89.97 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 88.94 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 87.5 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 82.99 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 82.51 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 80.31 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-72 Score=561.68 Aligned_cols=478 Identities=48% Similarity=0.812 Sum_probs=431.6
Q ss_pred CceeecCcc--CCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCC
Q 010532 24 GPVYRSLFA--KDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (508)
Q Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~ 101 (508)
+++||+... .++++....+..|+++.+++.++.+|+.+++......+ ..+.++++||+|..+++..++..|+++|++
T Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~ 131 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK 131 (691)
T ss_pred CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence 589999877 56667778999999999999999999999999873323 567889999999999999999999999999
Q ss_pred CCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEc-CCCHHHHhhcCCC-CCCCccEEE
Q 010532 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE-EKKIPEMLKTFPK-TTEHLKTIV 179 (508)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~l~~vi 179 (508)
+++.|+|+..|+++|+++..||...|.++||+...++++++.++++++.+.++|++ ++....+.+.... ..+.++.+|
T Consensus 132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI 211 (691)
T KOG1256|consen 132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII 211 (691)
T ss_pred CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999 5567777776665 358999999
Q ss_pred EeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCC-CCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhh
Q 010532 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLP-VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258 (508)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~ 258 (508)
.++...+.........+..+++|+++...+.......+ ++.++|.|.|+|||||||.||||++||+|+++.+.......
T Consensus 212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~ 291 (691)
T KOG1256|consen 212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS 291 (691)
T ss_pred EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence 99999998888888889999999999999977666664 77999999999999999999999999999999766533322
Q ss_pred hhccc-CCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhh
Q 010532 259 ESVNE-KLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (508)
Q Consensus 259 ~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (508)
..... ....+|++++++|+.|++....-...++.|+.+.++++|+..+.+.+++.+||.+.++|.+|+++.+.+..+..
T Consensus 292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~ 371 (691)
T KOG1256|consen 292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ 371 (691)
T ss_pred hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence 22222 22347999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhHH-hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEec
Q 010532 338 SGGLLKKTLFNIAYSYKF-HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQG 416 (508)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~ 416 (508)
..+++++++|+++..+|+ ..+++|..+. .++.++++.+++.++..|+++|.+++|++|+++++..+++..+|++|+++
T Consensus 372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG 450 (691)
T KOG1256|consen 372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG 450 (691)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence 999999999999999999 6688887776 89999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccC
Q 010532 417 YGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG 495 (508)
Q Consensus 417 yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~g 495 (508)
||+|||++.++...+++. ..+++|.|+|+++++++|+++-+....+ ..|||||||++||+||++||+.|+++| .||
T Consensus 451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG 527 (691)
T KOG1256|consen 451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG 527 (691)
T ss_pred ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence 999999977777777666 5599999999999999998887766665 479999999999999999999999999 899
Q ss_pred ceecCcccccc
Q 010532 496 WFHTGCPHLFL 506 (508)
Q Consensus 496 w~~TGD~g~~~ 506 (508)
|+||||+|+|+
T Consensus 528 WLhTGDiG~~~ 538 (691)
T KOG1256|consen 528 WLHTGDIGEWD 538 (691)
T ss_pred ccccccceeEC
Confidence 99999999986
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-67 Score=561.67 Aligned_cols=501 Identities=57% Similarity=1.010 Sum_probs=405.4
Q ss_pred CCCceeEEcccccccCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeH
Q 010532 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTY 81 (508)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty 81 (508)
++|||++|+++- .+..+|.++++||+......+...+.+..|+.++|+++++++||++|+......++..+.++++||
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty 80 (660)
T PLN02861 3 ETYTVKVEESRP--ATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTY 80 (660)
T ss_pred ccceeeeccCCC--CCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEH
Confidence 689999999983 444679999999999877777666778899999999999999999999764111333355678999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH
Q 010532 82 KEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161 (508)
Q Consensus 82 ~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 161 (508)
+||.++++++|++|.++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++....
T Consensus 81 ~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~ 160 (660)
T PLN02861 81 KEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160 (660)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEE
Q 010532 162 PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241 (508)
Q Consensus 162 ~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~ 241 (508)
..+..........++.++.+++............+....+++++...... ....+...++++++|+|||||||.||||+
T Consensus 161 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~ 239 (660)
T PLN02861 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVI 239 (660)
T ss_pred HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEE
Confidence 55544433332357778877654321111111123345678887764422 12223446899999999999999999999
Q ss_pred eehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeC
Q 010532 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAV 321 (508)
Q Consensus 242 ~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~ 321 (508)
+||++++..+......+......+..+|++++.+|++|++++...+.+++.|+++++.++++..+++.|++++||+++++
T Consensus 240 lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~v 319 (660)
T PLN02861 240 LTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGV 319 (660)
T ss_pred EecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeec
Confidence 99999998876644332111112467899999999999999877666899999999988899999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHH
Q 010532 322 PRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401 (508)
Q Consensus 322 P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~ 401 (508)
|.+++++.+....+....+.++..++.++..++...++.+..+...++..+..+++++++..++++|.+++||+++++++
T Consensus 320 P~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~ 399 (660)
T PLN02861 320 PRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHV 399 (660)
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHH
Confidence 99999999888888888888899999999999988887665555556778888899999999899999999999999998
Q ss_pred HHHHHHHhC-CceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCccccc
Q 010532 402 ETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480 (508)
Q Consensus 402 ~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~g 480 (508)
.++ .+.++ ..+++.||+||+++.++..........+++|+|+|+++++|+|+++.+......++.|||+|+||+++.|
T Consensus 400 ~~~-~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~G 478 (660)
T PLN02861 400 EEF-LRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG 478 (660)
T ss_pred HHH-HHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCccccc
Confidence 664 44566 4799999999998766654443333458999999999999998544332222344689999999999999
Q ss_pred ccCChhhhhhhcccCceecCcccccc
Q 010532 481 YYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 481 Y~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|||+|+.|.++|.||||+|||+|+++
T Consensus 479 Y~~~pe~T~~~f~dGw~~TGDlg~~d 504 (660)
T PLN02861 479 YHKRQDLTEEVLIDGWFHTGDIGEWQ 504 (660)
T ss_pred ccCCHHHHHhhhhccCcccCceEEEC
Confidence 99999999999999999999999975
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=560.35 Aligned_cols=497 Identities=74% Similarity=1.274 Sum_probs=397.1
Q ss_pred cccccccCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHH
Q 010532 10 VEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVI 89 (508)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~ 89 (508)
+...++.+.+.|.++++||+.....+++.......|+.++|+++++++||++|+......++..+.++++||+||.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~ 90 (666)
T PLN02614 11 VEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVI 90 (666)
T ss_pred ecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHH
Confidence 34455777788999999999977777765556778999999999999999999985410022223456799999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC
Q 010532 90 KVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP 169 (508)
Q Consensus 90 ~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 169 (508)
++|++|+++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.....
T Consensus 91 ~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~ 170 (666)
T PLN02614 91 KLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCP 170 (666)
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776555544333
Q ss_pred CCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHH
Q 010532 170 KTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249 (508)
Q Consensus 170 ~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~ 249 (508)
.....++.++.++.............+....++++++........+.+...++|+++|+|||||||.||||++||+|+..
T Consensus 171 ~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~ 250 (666)
T PLN02614 171 NSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVT 250 (666)
T ss_pred cccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHH
Confidence 22234677777754322111111112334678888776543222222334679999999999999999999999999998
Q ss_pred HHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHH
Q 010532 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.+..+...+......+..+|++++.+|++|.+++.....+++.|+++++.++++..+++.|++++||+++++|++++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~ 330 (666)
T PLN02614 251 LIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVY 330 (666)
T ss_pred HHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHH
Confidence 87664332211112467889999999999999987666678899999998889999999999999999999999999999
Q ss_pred HHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh
Q 010532 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA 409 (508)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~ 409 (508)
+.........+.++..+++.+.+++...+..+..+...++..+...++++++..++++|.+++||+++++.+.++++...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~ 410 (666)
T PLN02614 331 SGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVA 410 (666)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhc
Confidence 87777766677777788888888877777666656666778888888888888889999999999999988755544433
Q ss_pred CCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhh
Q 010532 410 CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489 (508)
Q Consensus 410 ~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~ 489 (508)
++.+++.||+||++++++...+......+++|+|+||++++|+|++++...+++.|+.|||+|+||+++.|||++|+.|.
T Consensus 411 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~ 490 (666)
T PLN02614 411 CCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTK 490 (666)
T ss_pred CCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhh
Confidence 58999999999998766554443333458999999999999998555544455567899999999999999999999999
Q ss_pred hhcccCceecCcccccc
Q 010532 490 EVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 490 ~~f~~gw~~TGD~g~~~ 506 (508)
++|.||||+|||+|+++
T Consensus 491 ~~f~dGw~~TGDlg~~d 507 (666)
T PLN02614 491 EVLIDGWLHTGDVGEWQ 507 (666)
T ss_pred hhhccCCcccceEEEEc
Confidence 99999999999999975
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=541.69 Aligned_cols=501 Identities=49% Similarity=0.932 Sum_probs=404.7
Q ss_pred eeEEcccccccCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHH
Q 010532 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85 (508)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~ 85 (508)
|.+++....+.+-++|.++++||+......++...++.+|+.++|++.++++||++|+......++..+.++++||+||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~ 83 (660)
T PLN02430 4 FAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVY 83 (660)
T ss_pred eeeeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHH
Confidence 44555544444346888999999987666665566789999999999999999999997641112333456778999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHh
Q 010532 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165 (508)
Q Consensus 86 ~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 165 (508)
++++++|+.|.+.|+++||+|+|+++|+++|+++.|||+++|++++|+++.++++++.+++++++++++|++........
T Consensus 84 ~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~ 163 (660)
T PLN02430 84 EEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELL 163 (660)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876443333
Q ss_pred hcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehH
Q 010532 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245 (508)
Q Consensus 166 ~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~ 245 (508)
.......+.++.++.+++............+...++|++++..+...........++++++|+|||||||.||||++||+
T Consensus 164 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~ 243 (660)
T PLN02430 164 EPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHE 243 (660)
T ss_pred hhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecH
Confidence 22212225677888876543321111112234567899888665433322334468999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHH
Q 010532 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL 325 (508)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l 325 (508)
++...+.............+..+|++++.+|++|.++....+.++..|+++++...++..+++.+++++||++.++|.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~ 323 (660)
T PLN02430 244 AVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVF 323 (660)
T ss_pred HHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHH
Confidence 99887765432111111246788999999999999998876677899999998877889999999999999999999999
Q ss_pred HHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHH
Q 010532 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFL 405 (508)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~ 405 (508)
+++.+.........+.++..++.++.+++...+..+..+...++..+.+.+++++...|+++|.+++||+++++++.+++
T Consensus 324 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~ 403 (660)
T PLN02430 324 ERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL 403 (660)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH
Confidence 99999887777777778889999999999888877665555677788888999999999999999999999999998777
Q ss_pred HHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCCh
Q 010532 406 RVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485 (508)
Q Consensus 406 ~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~ 485 (508)
+...++.+++.||+||++++++...+.....++++|+|+++++++|+++++....+.+.++.|||+|+||+++.|||++|
T Consensus 404 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~ 483 (660)
T PLN02430 404 RVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNP 483 (660)
T ss_pred HHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCCh
Confidence 76545789999999999887766555443445899999999999999855554445555578999999999999999999
Q ss_pred hhhhhhcccCceecCcccccc
Q 010532 486 DLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 486 ~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+.|.++|.||||+|||+|+++
T Consensus 484 e~t~~~~~dGw~~TGDig~~d 504 (660)
T PLN02430 484 ELTEEVMKDGWFHTGDIGEIL 504 (660)
T ss_pred HHhhhhhhccceeccceEEEC
Confidence 999999999999999999875
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=533.46 Aligned_cols=484 Identities=38% Similarity=0.656 Sum_probs=392.8
Q ss_pred ccccCCCCCCCCceeecCccCCCCCC---CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHH
Q 010532 13 AKEASGGRPSIGPVYRSLFAKDGFPA---PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVI 89 (508)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~ 89 (508)
+....+.+++.+.+||+...+..+-. ..+...++.++|+++++++||++|+......++..+.++++||+||.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~ 89 (651)
T PLN02736 10 VVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTART 89 (651)
T ss_pred eeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHH
Confidence 44557778899999998866655533 346778999999999999999999964310033334567899999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC
Q 010532 90 KVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP 169 (508)
Q Consensus 90 ~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 169 (508)
++|+.|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+.....
T Consensus 90 ~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~ 169 (651)
T PLN02736 90 AIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS 169 (651)
T ss_pred HHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877666655444
Q ss_pred CCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHH
Q 010532 170 KTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249 (508)
Q Consensus 170 ~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~ 249 (508)
.. +.++.+++.+.............+.....+++++..............++++++|+|||||||.||||++||+++..
T Consensus 170 ~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~ 248 (651)
T PLN02736 170 EI-PSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIA 248 (651)
T ss_pred cC-CCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHH
Confidence 33 66777777654322111111112345678888876543322223345789999999999999999999999999999
Q ss_pred HHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHH
Q 010532 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.+..+... ..+.++|++++.+|++|.+++...+.++..|+++++.+.++..+++.|++++||+++++|.+++++.
T Consensus 249 ~~~~~~~~-----~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~ 323 (651)
T PLN02736 249 NVAGSSLS-----TKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIY 323 (651)
T ss_pred HHHHHHhc-----cCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHH
Confidence 88875443 3677899999999999999998777889999999999889999999999999999999999999999
Q ss_pred HHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh
Q 010532 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA 409 (508)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~ 409 (508)
+.........+.++...+.+++..+...+..+. ...+..++..+++++...++++|.+++||+++++++.+++++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~ 400 (651)
T PLN02736 324 DGITNAVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF 400 (651)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh
Confidence 888777777888888888888777765554431 22345677778888888888999999999999999999999889
Q ss_pred CCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCccc-CCCCCCCceEEEecCcccccccCChhhh
Q 010532 410 CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD-ALSSTPRGEVCVKGSTVFSGYYKREDLT 488 (508)
Q Consensus 410 ~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~-~~~~~~~Gel~v~g~~v~~gY~~~~~~~ 488 (508)
|+.+++.||+||+++.++...+.. ...+++|+|+||++++|+|.+++... ...+++.|||+|+||+++.|||++|+.|
T Consensus 401 g~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t 479 (651)
T PLN02736 401 GGRVLEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQT 479 (651)
T ss_pred CCCeEEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHH
Confidence 999999999999987776555443 34589999999999999984332211 1112357999999999999999999999
Q ss_pred hhhc-ccCceecCcccccc
Q 010532 489 KEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 489 ~~~f-~~gw~~TGD~g~~~ 506 (508)
.+.| .||||+|||+|+++
T Consensus 480 ~~~~~~dgw~~TGDlg~~d 498 (651)
T PLN02736 480 REVIDEDGWLHTGDIGLWL 498 (651)
T ss_pred HhhhccCCCeeccceEEEc
Confidence 9999 69999999999875
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=530.01 Aligned_cols=469 Identities=24% Similarity=0.415 Sum_probs=374.9
Q ss_pred CCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-
Q 010532 19 GRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT- 97 (508)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~- 97 (508)
...++|++||..-.... .....++|+.++|.++++++||++|+++. + .+..++++||+||.+++.++|++|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~ 111 (746)
T PTZ00342 38 TNENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTY 111 (746)
T ss_pred CCCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 34566779997766655 45567999999999999999999999753 2 12235789999999999999999997
Q ss_pred --cCCCCC-----------cEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHH
Q 010532 98 --CGVEER-----------GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164 (508)
Q Consensus 98 --~gv~~g-----------d~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 164 (508)
+|+++| |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++|++++++++|++.+..+.+
T Consensus 112 ~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l 191 (746)
T PTZ00342 112 EGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGL 191 (746)
T ss_pred hhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHH
Confidence 499999 9999999999999999999999999999999999999999999999999999987777776
Q ss_pred hhcCCCCCCCccEEEEeCCCChhh--------------------------------------------------------
Q 010532 165 LKTFPKTTEHLKTIVSFSKVKPEQ-------------------------------------------------------- 188 (508)
Q Consensus 165 ~~~~~~~~~~l~~vi~~~~~~~~~-------------------------------------------------------- 188 (508)
.+..... +.++.+++++......
T Consensus 192 ~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (746)
T PTZ00342 192 LERKNEL-PHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270 (746)
T ss_pred HHhhccC-CCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHH
Confidence 6654443 7788888886532110
Q ss_pred -HHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCC
Q 010532 189 -REEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (508)
Q Consensus 189 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (508)
.......+.....++++.... ..........++++++|+|||||||.||||++||+|+++.+..+.... ......
T Consensus 271 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~ 346 (746)
T PTZ00342 271 LKEKAKKLGISIILFDDMTKNK-TTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYN 346 (746)
T ss_pred HHHHhhcCCCEEEEHHHHHhhc-ccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCC
Confidence 000001122334455554432 112223345689999999999999999999999999998876543210 011234
Q ss_pred CcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010532 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 268 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
.+++++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++++.+.........+.++..++
T Consensus 347 ~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~ 426 (746)
T PTZ00342 347 PKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLV 426 (746)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 58999999999999998777889999999998879999999999999999999999999999887777766777788888
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHH--hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcc
Q 010532 348 NIAYSYKFHNLKKGHKHVEASPIADKI--VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~ 425 (508)
.++...+....... .++..+.. .++++++..++++|.+++||+++++++.++++..+|+.++++||+||+++.
T Consensus 427 ~~a~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~ 501 (746)
T PTZ00342 427 KKILSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGP 501 (746)
T ss_pred HHHHHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccce
Confidence 88887776643321 12333333 578888889999999999999999999999999899999999999999877
Q ss_pred eeccCCCCcccCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCccc
Q 010532 426 TFVSLPNEMSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPH 503 (508)
Q Consensus 426 ~~~~~~~~~~~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g 503 (508)
++...+.. ..++++|+|+ |+++++|+|++++..... .+.|||+|+||++|.|||++|+.|+++| .||||+|||+|
T Consensus 502 ~~~~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~~~--~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig 578 (746)
T PTZ00342 502 IFVQHADD-NNTESIGGPISPNTKYKVRTWETYKATDT--LPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIV 578 (746)
T ss_pred eeeccCCC-CCcccccCcCCCcEEEEEecccccccCCC--CCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEE
Confidence 66655443 3458999998 999999998554333322 2579999999999999999999999999 69999999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
+++
T Consensus 579 ~~d 581 (746)
T PTZ00342 579 QIN 581 (746)
T ss_pred EEC
Confidence 875
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-63 Score=475.29 Aligned_cols=487 Identities=35% Similarity=0.613 Sum_probs=422.5
Q ss_pred ccccccCCCCCCCCceeecCccCCCCCC-CCCCCCCHHHHHHHHHHhCCCCCceeEEeec--------cCC------CCc
Q 010532 11 EKAKEASGGRPSIGPVYRSLFAKDGFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIV--------DGK------AGK 75 (508)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~ 75 (508)
.+++....+.+.++.+||+.....++-. .-++-.|+.++++++++++.++.++...+++ |++ -+.
T Consensus 7 ~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~ 86 (678)
T KOG1180|consen 7 YRVKAKPAANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGD 86 (678)
T ss_pred cccccCCCCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccc
Confidence 3456666777889999999986654444 4488899999999999999999999765332 221 235
Q ss_pred eEEeeHHHHHHHHHHHHHHHHHcCCCCCcE-EEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010532 76 YVWKTYKEVYDLVIKVVNAIRTCGVEERGK-CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 76 ~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~-V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
+.++||.|+..++..+|.+|.+.|++++++ ++|+++.+.+|+++++||++.+..+|.+...+..+.+.+.|+.++++.+
T Consensus 87 Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i 166 (678)
T KOG1180|consen 87 YKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAI 166 (678)
T ss_pred eeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEE
Confidence 789999999999999999999999997777 9999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHhhcCCCCCCCccEEEEeCCCCh----hhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEec
Q 010532 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP----EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYT 230 (508)
Q Consensus 155 i~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~T 230 (508)
|++.+.++++....+.. ..++.+|.+++.+. +.....-..++.+++++++++-+.....++.++.++|+|+||||
T Consensus 167 ~T~~~LL~kl~~~l~~~-~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYT 245 (678)
T KOG1180|consen 167 FTDSELLPKLKAPLKQA-KTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYT 245 (678)
T ss_pred EeCHHHHHHHHHHHhcc-CceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEc
Confidence 99999999877776666 89999999995432 22222233578999999999998776656666688999999999
Q ss_pred cCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHH-----
Q 010532 231 SGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVK----- 304 (508)
Q Consensus 231 SGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~----- 304 (508)
|||||.||||+++|+|+++.+.+....+ ..+.+.|+++.++|+.|++.+..-+.+++.|+.+-+.+. +..
T Consensus 246 SGSTG~PKGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~k 321 (678)
T KOG1180|consen 246 SGSTGLPKGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSK 321 (678)
T ss_pred CCCCCCCceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchh
Confidence 9999999999999999999999876544 257899999999999999999999999999999877653 111
Q ss_pred ---HHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHH
Q 010532 305 ---LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQ 381 (508)
Q Consensus 305 ---~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (508)
.---.+...|||+|.++|+++.++.+..-.+....+.+++.+|..++..|+..++. +-...+.++.+.|.+.|.
T Consensus 322 i~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~---~g~~s~~ld~lVFkKIr~ 398 (678)
T KOG1180|consen 322 IKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIER---NGPGSPLLDALVFKKIRA 398 (678)
T ss_pred hccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhc---cCCchhhHHHHHHHHHHH
Confidence 11123568899999999999999999999999999999999999999999999874 245688999999999999
Q ss_pred HcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccC
Q 010532 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDA 461 (508)
Q Consensus 382 ~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~ 461 (508)
..|++||++++||+|++++..+++...+.+++.++||.||+++..+...+.+... |.+|.|++.++++++|++|++..+
T Consensus 399 ~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~ 477 (678)
T KOG1180|consen 399 LLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFA 477 (678)
T ss_pred HhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccC
Confidence 9999999999999999999999999999999999999999999888877776655 899999999999999999988766
Q ss_pred CCCCCCceEEEecCcccccccCChhhhhhhc-c-cC--ceecCcccccc
Q 010532 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-DG--WFHTGCPHLFL 506 (508)
Q Consensus 462 ~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~-~g--w~~TGD~g~~~ 506 (508)
.+.-..|||||+|+++..||+++|+.|++.| . || ||+|||+|.|.
T Consensus 478 ~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~ 526 (678)
T KOG1180|consen 478 KNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFH 526 (678)
T ss_pred CCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceec
Confidence 6533589999999999999999999999999 4 89 99999999874
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=500.37 Aligned_cols=440 Identities=32% Similarity=0.567 Sum_probs=351.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....++...+.+.++.+|+.+++... ..+.++.+||+|+.+++.++|.+|+..|+..||+|+|++.|+++|+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d 87 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD 87 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45588999999999999998888766 3566789999999999999999999999977999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
+||+.+|++.||+.+..+++++.++|++++++++|++..............++.+...+...+...... ..........
T Consensus 88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 166 (613)
T COG1022 88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAV-EAKALVLEVF 166 (613)
T ss_pred HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhcc-chhhcccccc
Confidence 999999999999999999999999999999999999986554444333222121111111111000000 0000000111
Q ss_pred eHHHHH---HcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 201 SWDEFL---QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 201 ~~~~l~---~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
...... ...........+..++|.|.|+|||||||.||||++||+|+++++..+...+. ...++|+.++.+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~----~~~~~d~~LsfLPl 242 (613)
T COG1022 167 PDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP----PIGPGDRVLSFLPL 242 (613)
T ss_pred ccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC----CCCCCcEEEEeCcH
Confidence 111111 11111122224568999999999999999999999999999999999766541 37899999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh-
Q 010532 278 AHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH- 356 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 356 (508)
.|++.+.+.......|...++...++..+++.++++|||+++++|.+|+.+.+....+....+..+..+|.+++..+..
T Consensus 243 aHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~ 322 (613)
T COG1022 243 AHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKK 322 (613)
T ss_pred HHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 9999998754444444444555569999999999999999999999999999999999999998888899988866543
Q ss_pred ---hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010532 357 ---NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 357 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
.+..+. ....+...+.+.|+++++..|+++|++++||+++++++..+++.. |++++++||+||++++.+.+++..
T Consensus 323 ~~~~~~~~~-~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~ 400 (613)
T COG1022 323 ISRALLGGG-PLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDR 400 (613)
T ss_pred HHhhhcccC-CcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccC
Confidence 222211 122233388999999999999999999999999999999999985 899999999999999999888877
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
... +++|+|+|+++++|+| .|||+||||+||.|||++|+.|.++| .||||+|||+|.++
T Consensus 401 ~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d 460 (613)
T COG1022 401 FVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELD 460 (613)
T ss_pred ccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEc
Confidence 655 9999999999999998 59999999999999999999999999 69999999999875
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-61 Score=518.44 Aligned_cols=482 Identities=34% Similarity=0.576 Sum_probs=382.9
Q ss_pred CCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeec--------cC------CCCceEEeeHHHH
Q 010532 19 GRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV--------DG------KAGKYVWKTYKEV 84 (508)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~--------~~------~~~~~~~~Ty~el 84 (508)
+...++.+||+...+.-.....++.+|+.++|+++++++||++|+...... ++ ..+.++++||+||
T Consensus 33 ~~~~~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el 112 (696)
T PLN02387 33 VGGEPGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQV 112 (696)
T ss_pred CCCCCCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHH
Confidence 454555579999866444444567799999999999999999999542100 11 1245678999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHH
Q 010532 85 YDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164 (508)
Q Consensus 85 ~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 164 (508)
.++++++|++|.++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+
T Consensus 113 ~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l 192 (696)
T PLN02387 113 FERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKL 192 (696)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777776
Q ss_pred hhcCCCCCCCccEEEEeCCCChhhHHH-HhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEee
Q 010532 165 LKTFPKTTEHLKTIVSFSKVKPEQREE-IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243 (508)
Q Consensus 165 ~~~~~~~~~~l~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~s 243 (508)
.+..... +.++.++.+++........ .........+++++...+...........++|+++|+|||||||.||||++|
T Consensus 193 ~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lt 271 (696)
T PLN02387 193 IDISSQL-ETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMT 271 (696)
T ss_pred HHHhhcc-CCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEE
Confidence 6554433 6788888887643211110 0122345678888876654333233345689999999999999999999999
Q ss_pred hHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC----C-----HHHHHHHhhhcC
Q 010532 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG----D-----VKLLLEDIGELK 314 (508)
Q Consensus 244 h~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~----~-----~~~~~~~i~~~~ 314 (508)
|+|++..+..+...+ ..+.++|++++.+|++|++++.....++..|+++.+... + +..++..+++++
T Consensus 272 h~~l~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~ 347 (696)
T PLN02387 272 HGNIVATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALK 347 (696)
T ss_pred cHHHHHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhC
Confidence 999998887643321 246788999999999999999877677788888766432 1 234566899999
Q ss_pred CeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCC--CCCcchhhHHHhHHHHHHHcCCcEEEEEE
Q 010532 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK--HVEASPIADKIVFDKVKQSFGGRVRLILS 392 (508)
Q Consensus 315 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lr~i~~ 392 (508)
||++.++|.+++++.+.........+.+...+++++...++..+..... ....++.++.+.+++++...|+++|.+++
T Consensus 348 pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~ 427 (696)
T PLN02387 348 PTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLS 427 (696)
T ss_pred CcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEE
Confidence 9999999999999998877776677778888888888877766543211 12356678888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCC-CCCCCceEE
Q 010532 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVC 471 (508)
Q Consensus 393 ~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~-~~~~~Gel~ 471 (508)
||+++++++.++++..+|+++++.||+||+++.++.+.+.. ...+++|+|+|+++++|+|+++++.... .+++.|||+
T Consensus 428 GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~-~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~ 506 (696)
T PLN02387 428 GGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDD-TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIV 506 (696)
T ss_pred cCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCccc-CCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEE
Confidence 99999999999888888999999999999987776655443 3458999999999999999665543321 233579999
Q ss_pred EecCcccccccCChhhhhhhc-c--cC--ceecCcccccc
Q 010532 472 VKGSTVFSGYYKREDLTKEVM-V--DG--WFHTGCPHLFL 506 (508)
Q Consensus 472 v~g~~v~~gY~~~~~~~~~~f-~--~g--w~~TGD~g~~~ 506 (508)
|+||+++.|||++|+.|.++| . +| ||+|||+|+++
T Consensus 507 vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d 546 (696)
T PLN02387 507 IGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFH 546 (696)
T ss_pred eccCcccchhcCCHHHHhhhhccccCCCceeecCceEEEC
Confidence 999999999999999999998 2 35 99999999875
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=506.50 Aligned_cols=474 Identities=28% Similarity=0.507 Sum_probs=371.8
Q ss_pred CCCCCCceeecCccCC----CCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeec----------cCC--------CCce
Q 010532 19 GRPSIGPVYRSLFAKD----GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV----------DGK--------AGKY 76 (508)
Q Consensus 19 ~~~~~~~~~~~~~~~~----~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~----------~~~--------~~~~ 76 (508)
.++..+++||.....+ .+....++..|+.++|.++++++||++|+.+.... ++. .+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (700)
T PTZ00216 40 ETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNET 119 (700)
T ss_pred CCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCc
Confidence 3455688888764332 23333356789999999999999999999875100 010 0245
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE
Q 010532 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 156 (508)
+++||+||.++++++|+.|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++..++++++++++|+
T Consensus 120 ~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~ 199 (700)
T PTZ00216 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC 199 (700)
T ss_pred eEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhhcCCCC-CCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccC--CCCC-CCCCCCCCeEEEEeccC
Q 010532 157 EEKKIPEMLKTFPKT-TEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFD-LPVKKKNDICTIMYTSG 232 (508)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~~~~~~~a~i~~TSG 232 (508)
+......+....... .+.. .++.++..... .........+|++++..+.. ...+ .....++++++|+||||
T Consensus 200 ~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSG 274 (700)
T PTZ00216 200 NGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSG 274 (700)
T ss_pred CHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCC
Confidence 877665554433221 1222 45555443211 11123457789988776521 1111 22346899999999999
Q ss_pred CCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHH----
Q 010532 233 TTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLE---- 308 (508)
Q Consensus 233 tTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~---- 308 (508)
|||.||||++||+|+++.+..+...+......+.++|++++.+|++|.+++.....++..|+.+.+. ++..+.+
T Consensus 275 TTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~ 352 (700)
T PTZ00216 275 TTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFAR 352 (700)
T ss_pred CCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhcc
Confidence 9999999999999999888765432211111236789999999999999987766678888877663 4555544
Q ss_pred ---HhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCC
Q 010532 309 ---DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385 (508)
Q Consensus 309 ---~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (508)
.+++++||++.++|.+++++.+.........+.++..++.+++..++..+..+. ..+.++...+++.+...++
T Consensus 353 ~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~ 428 (700)
T PTZ00216 353 PHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGG 428 (700)
T ss_pred ccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCC
Confidence 688999999999999999999888777777777888889988888877766542 3456788888889988899
Q ss_pred cEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCC
Q 010532 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSST 465 (508)
Q Consensus 386 ~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~ 465 (508)
++|.+++||+++++++.++++..++ .+++.||+||+++.++....... ..+++|+|++|++++|+| +++......++
T Consensus 429 ~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~ 505 (700)
T PTZ00216 429 RVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPE 505 (700)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCC
Confidence 9999999999999999998888778 99999999999877665544432 348999999999999999 54433333345
Q ss_pred CCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 466 PRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 466 ~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
+.|||+|+||+++.|||++|+.|.+.| .||||+|||+|+++
T Consensus 506 ~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d 547 (700)
T PTZ00216 506 PRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIA 547 (700)
T ss_pred CCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEc
Confidence 679999999999999999999999999 79999999999985
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=460.64 Aligned_cols=389 Identities=28% Similarity=0.382 Sum_probs=311.9
Q ss_pred HHHHHhCCCC-CceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcC--CCCCcEEEEEcCCchhHHHHHHHHHhhC
Q 010532 51 RMAVERNPNN-RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCG--VEERGKCGIYGVNCPEWIIGMEACNALG 127 (508)
Q Consensus 51 ~~~a~~~pd~-~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~g--v~~gd~V~i~~~n~~~~~~~~lA~~~~G 127 (508)
.+.+..++++ +.+++. +..+ +.+||+|+++++.++|+.|.++| +++||+|++++||+++++++++||+.+|
T Consensus 23 ~~~~~~~~~~~~~~i~~---~~~g---~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~G 96 (537)
T KOG1176|consen 23 GRPAFVYLDRNTSLVYQ---DSDG---RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAG 96 (537)
T ss_pred cccccccccCcceEEEe---cCCC---cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3334344444 777766 3211 57999999999999999999875 8999999999999999999999999999
Q ss_pred CeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee-HHHHH
Q 010532 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS-WDEFL 206 (508)
Q Consensus 128 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 206 (508)
++..|+||.+.+.++...++.++|+++|++.....++.+...... ..++++......... ........ +.++.
T Consensus 97 a~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~ 170 (537)
T KOG1176|consen 97 AVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVISI---SDLVEDLDAFEDLM 170 (537)
T ss_pred ccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcccc---ccccccccchhhcc
Confidence 999999999999999999999999999999999988877654432 344444432110000 00001111 33333
Q ss_pred HcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHH
Q 010532 207 QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286 (508)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 286 (508)
....... ..+...+|++++.|||||||.||||.+||++++........ ...+...++.++.+|++|.+|+...
T Consensus 171 ~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~-----~~~~~~~~v~l~~lPl~H~~Gl~~~ 243 (537)
T KOG1176|consen 171 PEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKI-----GWELTSDDVYLCTLPLFHIYGLITL 243 (537)
T ss_pred ccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhh-----cccCCCCceEEEechHHHHhHHHHH
Confidence 2221111 44557799999999999999999999999999988776333 3356678999999999999999986
Q ss_pred HH-HHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCC
Q 010532 287 EV-FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364 (508)
Q Consensus 287 ~~-~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (508)
+. .+..|.++++.+. +++.+++.|++|++|+++++|.++..|++
T Consensus 244 ~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~---------------------------------- 289 (537)
T KOG1176|consen 244 LLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAK---------------------------------- 289 (537)
T ss_pred HHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhc----------------------------------
Confidence 66 5777777777776 99999999999999999999999999876
Q ss_pred CCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCCCCcccCCccccc
Q 010532 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443 (508)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p 443 (508)
+|...+.++ ++++.+.+||+++++++.+.++++++ ..+.++||+||+++.++.+...+...++++|++
T Consensus 290 ---~p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~ 358 (537)
T KOG1176|consen 290 ---SPIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRL 358 (537)
T ss_pred ---CCccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCcc
Confidence 333333333 48999999999999999999999998 889999999999987777766554566999999
Q ss_pred ccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhccc-CceecCcccccc
Q 010532 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGCPHLFL 506 (508)
Q Consensus 444 ~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~-gw~~TGD~g~~~ 506 (508)
+++++++|.+ +.|..++.+ +.||||++|+++++||++||++|++.|.+ |||||||+|+++
T Consensus 359 ~~g~~~~v~~-e~g~~l~~~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D 419 (537)
T KOG1176|consen 359 LPGVRVKVLD-ETGVSLGPN--QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFD 419 (537)
T ss_pred ccceEEEeeC-CCCCCCCCC--CceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEc
Confidence 9999998888 777665554 89999999999999999999999999955 999999999986
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=467.57 Aligned_cols=395 Identities=26% Similarity=0.414 Sum_probs=322.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.....++.+.|+++++++|+++|+++. +... ++||+||.++++++|+.|++.|+++||+|+|+++|+++++++
T Consensus 7 ~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~ 79 (534)
T COG0318 7 MTAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIA 79 (534)
T ss_pred ccccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 355689999999999999999999986 3321 599999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|+||.+..+++.++++.++++.++++....+......... +....+......... .
T Consensus 80 ~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~ 147 (534)
T COG0318 80 FLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADDR-----------L 147 (534)
T ss_pred HHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEeccccccc-----------c
Confidence 9999999999999999999999999999999999999988444433333222 333333332222110 0
Q ss_pred -eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccC--CCCCcEEEEecC
Q 010532 200 -YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK--LTSEDVYVSYLP 276 (508)
Q Consensus 200 -~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~~p 276 (508)
.+++++..............+++++++++|||||||.||||++||+|+..+...+...+ . +...|++++++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lP 222 (534)
T COG0318 148 PITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLP 222 (534)
T ss_pred cccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecC
Confidence 24555543332222222336789999999999999999999999999999988865544 5 788999999999
Q ss_pred hHHHHHHHHHHHH-HHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHH
Q 010532 277 LAHIFDRAIEEVF-ISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (508)
Q Consensus 277 ~~~~~g~~~~~~~-l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (508)
++|.+|+...+.+ ++.|+++++.+ +++..++..+.+++++++.++|.++..++.....
T Consensus 223 l~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~------------------ 284 (534)
T COG0318 223 LFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEK------------------ 284 (534)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCcc------------------
Confidence 9999999985555 99999999987 5999999999999999999999999998763211
Q ss_pred hHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCC
Q 010532 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLP 431 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~ 431 (508)
...++. +++|.+++||+++++++.+.+++.|+ ..+.+.||+||+++.++....
T Consensus 285 -------------------~~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 338 (534)
T COG0318 285 -------------------DDDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPP 338 (534)
T ss_pred -------------------Cccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCC
Confidence 111111 03999999999999999999999998 479999999999988777776
Q ss_pred CC-cccCCcccccccCeeEEEeecCCCc-ccCCCCCCCceEEEecCcccccccCChhhhhhhccc-CceecCcccccc
Q 010532 432 NE-MSMIGTVGPPVPNVDVCLESVPEME-YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGCPHLFL 506 (508)
Q Consensus 432 ~~-~~~~~s~G~p~~~~~v~Iv~~~~~~-~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~-gw~~TGD~g~~~ 506 (508)
.. ....+++|+|+||++++|+| +++. ..| |+.|||+|+||+++.||||+|+.|.+.|.+ |||+|||+|+++
T Consensus 339 ~~~~~~~~~~G~~~pg~~v~Ivd-~~~~~~~p---g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d 412 (534)
T COG0318 339 DDLLAKPGSVGRPLPGVEVRIVD-PDGGEVLP---GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412 (534)
T ss_pred chhhhcCCcccccCCCcEEEEEe-CCCCccCC---CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEc
Confidence 65 23457889999999999999 6665 333 689999999999999999999999998864 999999999765
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-56 Score=421.57 Aligned_cols=403 Identities=22% Similarity=0.328 Sum_probs=341.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch
Q 010532 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (508)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~ 114 (508)
+-...+-.+.|+.+.++-.+++-||+.|+++.+ .+ .++||+||.+.++.+|++|.++|+++||||++..||+.
T Consensus 41 g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~ 113 (596)
T KOG1177|consen 41 GCSQIPLDSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSY 113 (596)
T ss_pred CCCCCCcccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChH
Confidence 344456788999999999999999999999862 23 45999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhc------------CCCCCCCccE
Q 010532 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKT------------FPKTTEHLKT 177 (508)
Q Consensus 115 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~------------~~~~~~~l~~ 177 (508)
+|+...|||.++|.+.+++||.+..++++..|++.+++++|....+. ..+.++ .++.++.+.+
T Consensus 114 ~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lth 193 (596)
T KOG1177|consen 114 EWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTH 193 (596)
T ss_pred HHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceE
Confidence 99999999999999999999999999999999999999999987532 222222 2334588888
Q ss_pred EEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCC-----CCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHh
Q 010532 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ-----FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA 252 (508)
Q Consensus 178 vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~ 252 (508)
+|..++... -.+.+.++|++....... .......|++++.|+|||||||.|||+.+||.|++++..
T Consensus 194 vi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~ 264 (596)
T KOG1177|consen 194 VILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNAR 264 (596)
T ss_pred EEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHH
Confidence 888773322 246788888887664422 112234789999999999999999999999999999998
Q ss_pred hhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHH
Q 010532 253 GVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.....+ ++..++++++..|++|.+|... ...++..|+++|++.. ++...+++|.++|+|+++++|+|+..++
T Consensus 265 ~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dll 339 (596)
T KOG1177|consen 265 AVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLL 339 (596)
T ss_pred HHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHh
Confidence 866555 7788899999999999999766 6777999999999754 9999999999999999999999999987
Q ss_pred HHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh
Q 010532 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA 409 (508)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~ 409 (508)
+. +.....++ +++|.++.||+++++++.+.+.+..
T Consensus 340 n~-------------------------------------~~~~~~~~--------s~lr~~vigGa~~s~eLlk~iv~~~ 374 (596)
T KOG1177|consen 340 NI-------------------------------------PQKQQVDL--------SSLRKGVIGGAPVSPELLKLIVNQM 374 (596)
T ss_pred cc-------------------------------------hhhccCch--------hhhhhheeCCCCCCHHHHHHHHHhh
Confidence 63 22222223 3889999999999999999999877
Q ss_pred CC-ceEeccCcccCCcceeccCCCCc--ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChh
Q 010532 410 CA-HVLQGYGLTETCAGTFVSLPNEM--SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486 (508)
Q Consensus 410 ~~-~v~~~yG~tE~~~~~~~~~~~~~--~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~ 486 (508)
+. .+...||+||++.+.++...++. +...++|..+++.+..|+| .+|...|.+ ..|||++||++++.|||++++
T Consensus 375 ~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg~~~ 451 (596)
T KOG1177|consen 375 NMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWGEEE 451 (596)
T ss_pred CceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecCCcc
Confidence 65 47779999999999888877653 3457999999999999999 888888887 679999999999999999999
Q ss_pred hhhhhc-ccCceecCcccccc
Q 010532 487 LTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 487 ~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.|.+.. +|.||+|||+|.+.
T Consensus 452 kT~eti~~drW~~TGDi~~m~ 472 (596)
T KOG1177|consen 452 KTKETIGNDRWYDTGDIAVMD 472 (596)
T ss_pred cchhhcccccceecCceEEEc
Confidence 999998 89999999999864
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=433.86 Aligned_cols=385 Identities=22% Similarity=0.256 Sum_probs=309.8
Q ss_pred HHHHHHHHHh-CCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhHHHHHHHHH
Q 010532 47 WDVFRMAVER-NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACN 124 (508)
Q Consensus 47 ~~~l~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (508)
.++++++.+. .+|+.|+++. +..... +.+||+||++.++++|+.|++ .|+ +||||+|++|+.++.++++|||+
T Consensus 12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~ 86 (528)
T COG0365 12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA 86 (528)
T ss_pred hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence 3457777663 5789999987 444333 899999999999999999986 678 99999999999999999999999
Q ss_pred hhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC--CCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 125 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
++||+.+|+.+.++++++...+++++++++|+++....+...... .....+..+++..... +.|
T Consensus 87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~ 152 (528)
T COG0365 87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWY 152 (528)
T ss_pred HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccH
Confidence 999999999999999999999999999999999876543222110 0000010133333221 567
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++...... ..+....+.+|+++++|||||||.||||+++|..++........ ..+.+.++|++++..++.|..|
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~----~~~~~~~~Dv~w~~ad~GW~~g 227 (528)
T COG0365 153 DEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK----FHGDLLPGDRFWNSSDPGWIYG 227 (528)
T ss_pred HHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHH----HhhCCCCCCEEEeCCCchhhhC
Confidence 776665422 33334478999999999999999999999999987766655332 1235669999999999999999
Q ss_pred HHH-HHHHHHcCCEEEEecC---C-HHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 283 RAI-EEVFISNGAAIGFWRG---D-VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 283 ~~~-~~~~l~~G~~vv~~~~---~-~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
.+. ++.+|.+|++++++++ . +..+++.|+++++|.+++.|+.++.|.+.-.
T Consensus 228 ~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~------------------------ 283 (528)
T COG0365 228 LWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL------------------------ 283 (528)
T ss_pred chHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC------------------------
Confidence 988 8888999999999965 3 8999999999999999999999999876211
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccC
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~ 437 (508)
.+ ++++++||.+.++|||+++++.+++.+.+|+++.+.||+||+|++.....+ ... +
T Consensus 284 -------------~~--------~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~-~ 340 (528)
T COG0365 284 -------------GE--------PYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVK-N 340 (528)
T ss_pred -------------cc--------cccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcC-C
Confidence 12 223358999999999999999999999999999999999999966665555 333 3
Q ss_pred CcccccccCeeEEEeecCCCcccCCCCCCCceEEEecC--cccccccCChhhhhhhcccCceecCcccccc
Q 010532 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 438 ~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~--~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
++.|+|+||+++.|+| ++|++++.+ + |+|+|+.| +++.+||+||+.+.++|.+.||.|||.++.+
T Consensus 341 g~~g~p~pG~~~~vvd-d~g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~D 407 (528)
T COG0365 341 GSSGLPLPGYAVRRVD-DEGNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD 407 (528)
T ss_pred CCCCCCCCCceeEEEC-CCCCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEc
Confidence 6669999999999999 776655554 6 99999997 8999999999999999855599999998764
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=457.66 Aligned_cols=414 Identities=16% Similarity=0.180 Sum_probs=309.7
Q ss_pred CCCCHHHHHHHHHHh--CCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 42 GMESCWDVFRMAVER--NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
..|+..++|+++++. +||++|+++. ....+..+++||+||.+++.++|+.|+++|+++||+|+|+++|+++++++
T Consensus 57 ~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~ 133 (647)
T PTZ00237 57 ELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIA 133 (647)
T ss_pred eeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 346678888888764 7999999875 33223347899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC---------CHHHHhhcCCCCCCCccEEEEeCCCCh---h
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK---------KIPEMLKTFPKTTEHLKTIVSFSKVKP---E 187 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~~~l~~vi~~~~~~~---~ 187 (508)
+|||+++|++++|+++.++.+++..++++++|+++|+++. ..+.+.+...........++....... .
T Consensus 134 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 213 (647)
T PTZ00237 134 MLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSES 213 (647)
T ss_pred HHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccc
Confidence 9999999999999999999999999999999999999763 122222222111112345554321110 0
Q ss_pred hHHH--HhhcCcEEeeHHHHHHccc----CCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHH-HHHHHhhhhhhhhh
Q 010532 188 QREE--IEKYGLAVYSWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLES 260 (508)
Q Consensus 188 ~~~~--~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~-l~~~~~~~~~~~~~ 260 (508)
.... ..........|++++.... ..........++++++|+|||||||.||||+++|.+ +........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~----- 288 (647)
T PTZ00237 214 DLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWR----- 288 (647)
T ss_pred ccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHH-----
Confidence 0000 0000012345777665321 111222345779999999999999999999999998 443322211
Q ss_pred cccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCC-------HHHHHHHhhhcCCeEEEeCcHHHHHHHHHHH
Q 010532 261 VNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGD-------VKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333 (508)
Q Consensus 261 ~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~-------~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~ 333 (508)
.......++++++..|++|..+...++.++..|+++++++.+ +..+++.|+++++|+++++|++++.|.+...
T Consensus 289 ~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 368 (647)
T PTZ00237 289 SIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP 368 (647)
T ss_pred HhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCc
Confidence 122556789999999999987666677889999999998652 6789999999999999999999998865210
Q ss_pred HhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCce
Q 010532 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHV 413 (508)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v 413 (508)
... ...... ..++||.+++||+++++++.+++++.+|+.+
T Consensus 369 ~~~--------------------------------~~~~~~--------~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i 408 (647)
T PTZ00237 369 EAT--------------------------------IIRSKY--------DLSNLKEIWCGGEVIEESIPEYIENKLKIKS 408 (647)
T ss_pred ccc--------------------------------cccccc--------CcchheEEEecCccCCHHHHHHHHHhcCCCE
Confidence 000 000001 1148999999999999999999999999999
Q ss_pred EeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecC---cccccccCChhhhhh
Q 010532 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKE 490 (508)
Q Consensus 414 ~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~~~~ 490 (508)
++.||+||+++.+....+......+++|+|+||++++|+| ++|.+++. |+.|||+++|| +++.|||++++.+.+
T Consensus 409 ~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~--ge~GEl~v~~p~~p~~~~gy~~~~~~~~~ 485 (647)
T PTZ00237 409 SRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNV--NEIGEVAFKLPMPPSFATTFYKNDEKFKQ 485 (647)
T ss_pred EeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCC--CCceEEEEeccCCchhhCceeCCHHHHHH
Confidence 9999999998765443332222348999999999999999 77776654 58999999986 789999999999998
Q ss_pred hcc--cCceecCcccccc
Q 010532 491 VMV--DGWFHTGCPHLFL 506 (508)
Q Consensus 491 ~f~--~gw~~TGD~g~~~ 506 (508)
.|. +|||+|||+|+++
T Consensus 486 ~f~~~~g~~~TGDlg~~d 503 (647)
T PTZ00237 486 LFSKFPGYYNSGDLGFKD 503 (647)
T ss_pred HHhCCCCEEECCcEEEEC
Confidence 883 8999999999874
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=447.15 Aligned_cols=390 Identities=22% Similarity=0.334 Sum_probs=304.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.+.|+++++++||++|+++. + ..+.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 113 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALA 113 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 468999999999999999999864 2 223357899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCC-----hHHHHHHHHhcCceEEEEcCCC-HHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 123 CNALGLHCVPLYDTLG-----AGAVEFIICHSGVSIAFVEEKK-IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
|+++|++++|+++.++ .+++.++++.++++++|+++.. .......... ... .++....... .
T Consensus 114 ~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------~ 181 (614)
T PRK08180 114 AMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------G 181 (614)
T ss_pred HHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------C
Confidence 9999999999999998 7999999999999999998642 2222211111 122 2333222110 0
Q ss_pred cEEeeHHHHHHcccCCC--CCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC--CCCcEEE
Q 010532 197 LAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYV 272 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~~~~l 272 (508)
.....++++........ .......++++++|+|||||||.||||++||+++...+......+ .. ...++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~l 256 (614)
T PRK08180 182 RAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVLV 256 (614)
T ss_pred cccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEEE
Confidence 01245666654321111 111234678999999999999999999999999998877654433 33 2568999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC--C---HHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG--D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (508)
+.+|++|.+++.. ++.+++.|+++++.+. + ...+++.++++++|+++++|.++..|++.+...
T Consensus 257 ~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~----------- 325 (614)
T PRK08180 257 DWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD----------- 325 (614)
T ss_pred EecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc-----------
Confidence 9999999999865 5667999999999763 3 357788999999999999999999987643221
Q ss_pred HHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHH----hC--CceEeccCcc
Q 010532 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC--AHVLQGYGLT 420 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~--~~v~~~yG~t 420 (508)
+. .....++++|.+++||+++++++.+.+++. +| +.+++.||+|
T Consensus 326 ----------------------~~--------~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~T 375 (614)
T PRK08180 326 ----------------------AA--------LRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMT 375 (614)
T ss_pred ----------------------hh--------hhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeeccc
Confidence 00 011122589999999999999999998875 33 6799999999
Q ss_pred cCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceec
Q 010532 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499 (508)
Q Consensus 421 E~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~T 499 (508)
|++++++...... ..++++|+|++|++++|++ + +..|||+|+||+++.|||++|+.+.+.| .||||+|
T Consensus 376 E~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~T 444 (614)
T PRK08180 376 ETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRS 444 (614)
T ss_pred ccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCceec
Confidence 9987776554332 3458999999999999998 3 2469999999999999999999999999 6999999
Q ss_pred Cccccc
Q 010532 500 GCPHLF 505 (508)
Q Consensus 500 GD~g~~ 505 (508)
||+|++
T Consensus 445 GDlg~~ 450 (614)
T PRK08180 445 GDAVRF 450 (614)
T ss_pred cceEEe
Confidence 999997
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=444.44 Aligned_cols=393 Identities=20% Similarity=0.285 Sum_probs=303.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....++.++|+++++++||++|+++. +...+.++.+||+||.++++++|+.|++.|+++||+|+++++|++++++++
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 122 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT 122 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 45678999999999999999999865 332344678999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCCh-----HHHHHHHHhcCceEEEEcCCC-HHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010532 121 EACNALGLHCVPLYDTLGA-----GAVEFIICHSGVSIAFVEEKK-IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
|||+++|++++|+++.++. +++.++++.++++++|+++.. .......... ..++ ++.+.....
T Consensus 123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~-~i~~~~~~~-------- 191 (624)
T PRK12582 123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDVT-VVHVTGPGE-------- 191 (624)
T ss_pred HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCce-EEEEcCCCc--------
Confidence 9999999999999999885 899999999999999998642 2222222211 1222 333332111
Q ss_pred cCcEEeeHHHHHHcccCCCC--CCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCC---CCc
Q 010532 195 YGLAVYSWDEFLQLGENKQF--DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT---SED 269 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~---~~~ 269 (508)
......++++......... ......++++++|+|||||||.||||+++|+++...+......+ ... ..+
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~ 265 (624)
T PRK12582 192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPP 265 (624)
T ss_pred -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCc
Confidence 0123455665543221111 11234678999999999999999999999999988776643322 222 357
Q ss_pred EEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--C---HHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhH
Q 010532 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (508)
Q Consensus 270 ~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (508)
+++.++|++|.+++.. ++.++..|+++++.+. . ...+++.++++++|+++++|.++..|.+.+...
T Consensus 266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~-------- 337 (624)
T PRK12582 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKD-------- 337 (624)
T ss_pred eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhC--------
Confidence 9999999999999876 5567899999998753 2 345677889999999999999999887543211
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh------CCceEecc
Q 010532 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA------CAHVLQGY 417 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------~~~v~~~y 417 (508)
+.....+ .+++|.+++||+++++++.+.+++.+ ++.+++.|
T Consensus 338 -------------------------~~~~~~~--------~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y 384 (624)
T PRK12582 338 -------------------------DALRRSF--------FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY 384 (624)
T ss_pred -------------------------HHHHHHH--------hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence 1111111 24899999999999999999998863 36899999
Q ss_pred CcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCc
Q 010532 418 GLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496 (508)
Q Consensus 418 G~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw 496 (508)
|+||++.++...... ....+++|+|+||++++|++ .|+.|||+|+|++++.|||++|+.+.+.| .|||
T Consensus 385 G~TE~~~~~~~~~~~-~~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw 453 (624)
T PRK12582 385 GATETAPTTTGTHWD-TERVGLIGLPLPGVELKLAP----------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGF 453 (624)
T ss_pred ccccccceeecccCC-CCCCCCCCcCCCCcEEEEcc----------CCCceEEEEECCcccccccCCccchhhhcCccCC
Confidence 999998766533322 23458999999999999975 45789999999999999999999999999 7999
Q ss_pred eecCccccc
Q 010532 497 FHTGCPHLF 505 (508)
Q Consensus 497 ~~TGD~g~~ 505 (508)
|+|||+|++
T Consensus 454 ~~TGDlg~~ 462 (624)
T PRK12582 454 YRLGDAARF 462 (624)
T ss_pred ccccceEEe
Confidence 999999997
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=443.87 Aligned_cols=395 Identities=19% Similarity=0.204 Sum_probs=306.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.-++.++|++.++++||++|+++. + +.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la 76 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA 76 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357899999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++..+++.+++++++++...............+.++.++..++....... .......+
T Consensus 77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 152 (563)
T PLN02860 77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLTT 152 (563)
T ss_pred HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhcccc
Confidence 99999999999999999999999999999999998765322222211122344444444332110000 00011122
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++...............++++++++|||||||.||+|.++|+++..+....... .++.++|+++..+|++|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~-----~~~~~~d~~l~~~pl~h~~g 227 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAI-----VGYGEDDVYLHTAPLCHIGG 227 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhh-----cCCCCCCEEEEecCchhhcc
Confidence 2221111011111123357899999999999999999999999998776653332 36788899999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcC
Q 010532 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (508)
+...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+......
T Consensus 228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------- 282 (563)
T PLN02860 228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM------------------------- 282 (563)
T ss_pred HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-------------------------
Confidence 8877788999999988875 99999999999999999999999998876321110
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC-------
Q 010532 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE------- 433 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~------- 433 (508)
.....+++|.+++||+++++++.+.+++.| ++.+++.||+||+++.+.......
T Consensus 283 ------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 344 (563)
T PLN02860 283 ------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344 (563)
T ss_pred ------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence 001114899999999999999999999988 689999999999987554322111
Q ss_pred ---------------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCce
Q 010532 434 ---------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (508)
Q Consensus 434 ---------------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~ 497 (508)
.....++|+|+|+++++|++ ++ +++.|||+|+|++++.|||++|+.+.+.| .+|||
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 416 (563)
T PLN02860 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL 416 (563)
T ss_pred hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence 01123689999999999998 44 35789999999999999999999999988 78999
Q ss_pred ecCcccccc
Q 010532 498 HTGCPHLFL 506 (508)
Q Consensus 498 ~TGD~g~~~ 506 (508)
+|||+|++.
T Consensus 417 ~TGDl~~~d 425 (563)
T PLN02860 417 DTGDIGWID 425 (563)
T ss_pred EccceEEEc
Confidence 999999974
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=448.91 Aligned_cols=408 Identities=18% Similarity=0.225 Sum_probs=309.3
Q ss_pred CCHHHHHHHHHH-hCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
|...++|+++++ .+||++|+++. ....+..+++||+||.+++.++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA 164 (666)
T PLN02654 88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA 164 (666)
T ss_pred eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 445778888776 48999999875 33333447899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHH---------HhhcCCCC---CCCccEEEEeCCCChhhHH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE---------MLKTFPKT---TEHLKTIVSFSKVKPEQRE 190 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~l~~vi~~~~~~~~~~~ 190 (508)
|+++|++++|+++.++.+++..+++.++|+++|+++..... +....... ......++...........
T Consensus 165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
T PLN02654 165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE 244 (666)
T ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence 99999999999999999999999999999999998764211 11111100 0112223332221100000
Q ss_pred HHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHH-hhhhhhhhhcccCCCCCc
Q 010532 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI-AGVKCLLESVNEKLTSED 269 (508)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~-~~~~~~~~~~~~~~~~~~ 269 (508)
...........|+++..... ...+.....++++++|+|||||||.||||+++|.+++... ..+.. ..++.++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~-----~~~~~~~d 318 (666)
T PLN02654 245 DTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKY-----AFDYKPTD 318 (666)
T ss_pred ccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHH-----hcCCCCCc
Confidence 00000011233555543321 1122233577999999999999999999999999986443 33222 23678899
Q ss_pred EEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhH
Q 010532 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (508)
Q Consensus 270 ~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (508)
++++..|++|..+... ++.+|+.|+++++++. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------- 390 (666)
T PLN02654 319 VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-------- 390 (666)
T ss_pred EEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc--------
Confidence 9999999999998765 6677999999999863 7899999999999999999999999886521000
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcc
Q 010532 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLT 420 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~t 420 (508)
....++ ++||.++++|+++++++.+++.+.+| +++.+.||+|
T Consensus 391 ---------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~T 435 (666)
T PLN02654 391 ---------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 435 (666)
T ss_pred ---------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccc
Confidence 001112 38999999999999999999999887 6899999999
Q ss_pred cCCcceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---cc
Q 010532 421 ETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VD 494 (508)
Q Consensus 421 E~~~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~ 494 (508)
|+++......+.. ...++++|+|++|++++|+| ++|.+++ .++.|||+|++ |+++.|||++++.+.+.+ .+
T Consensus 436 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~--~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~ 512 (666)
T PLN02654 436 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIE--GECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFA 512 (666)
T ss_pred ccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCC--CCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCC
Confidence 9988766544432 23458999999999999999 8887664 34789999999 789999999999888776 28
Q ss_pred CceecCcccccc
Q 010532 495 GWFHTGCPHLFL 506 (508)
Q Consensus 495 gw~~TGD~g~~~ 506 (508)
|||+|||+|+++
T Consensus 513 g~~~TGD~~~~d 524 (666)
T PLN02654 513 GYYFSGDGCSRD 524 (666)
T ss_pred CEEEeCceEEEC
Confidence 999999999875
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=440.34 Aligned_cols=390 Identities=21% Similarity=0.219 Sum_probs=303.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.+.|.+.++++|+++|+.+. +. +++||+||.++++++|+.|.+. +||+|+|+++|++++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999998754 22 3699999999999999999874 89999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++.++++.++++++|++.+....+.............++..++... ...
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK------------ELS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh------------hcc
Confidence 99999999999999999999999999999999999876655543322110001113333332110 001
Q ss_pred HHHHHHcc-----cC----CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 202 WDEFLQLG-----EN----KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 202 ~~~l~~~~-----~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
+.+..... .. .........++++++|+|||||||.||+|.++|+++.......... ..+..+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l 228 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF-----FSPKEDDVMM 228 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh-----cCCCCCceEE
Confidence 11111000 00 0011223567899999999999999999999999998887664433 3677899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEec--CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
+.+|++|.+++.. .+.++..|+++++.+ .++..+++.|+++++|+++++|++++.+++......
T Consensus 229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------- 295 (539)
T PRK06334 229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE------------- 295 (539)
T ss_pred EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------------
Confidence 9999999999875 667799999998875 389999999999999999999999998876321110
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceec
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFV 428 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~ 428 (508)
...+++|.+++||+++++++.+.+++.+ ++.+++.||+||++.+++.
T Consensus 296 --------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 343 (539)
T PRK06334 296 --------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI 343 (539)
T ss_pred --------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence 0114899999999999999999999988 6899999999999887765
Q ss_pred cCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc--ccCceecCcccccc
Q 010532 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDGWFHTGCPHLFL 506 (508)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f--~~gw~~TGD~g~~~ 506 (508)
.........+++|+|++|++++|+| +++. .+++.|+.|||+|+|++++.|||++++.+.... .+|||+|||+|+++
T Consensus 344 ~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d 421 (539)
T PRK06334 344 NTVNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVD 421 (539)
T ss_pred ccCCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEEC
Confidence 5443333347899999999999998 5432 344556899999999999999999998654322 36799999999875
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=444.34 Aligned_cols=411 Identities=21% Similarity=0.235 Sum_probs=317.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....|+.++|++.++++||++|+++... .+.....+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~ 100 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL 100 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 5567899999999999999999987510 111123368999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhcCCCCCCCccEEEEeCCCChhhH--HHH-
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQR--EEI- 192 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~l~~vi~~~~~~~~~~--~~~- 192 (508)
|||+++| +++|+++.++.+++..+++.++++++|++.... .++....... +.++.++.++....... ...
T Consensus 101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAAL-PELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcC-CcceeEEEecCcccccccccccc
Confidence 9999999 579999999999999999999999999986532 2333322222 56666666553211000 000
Q ss_pred ----hhcCcEEeeHHHHHHcccCCCC-CCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCC
Q 010532 193 ----EKYGLAVYSWDEFLQLGENKQF-DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (508)
Q Consensus 193 ----~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (508)
.........+++.+........ ......++++++++|||||||.||+|.+||++++.........+ .+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~ 253 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGP 253 (632)
T ss_pred cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCC
Confidence 0011234456665554322211 12234678999999999999999999999999988776644333 5688
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC----C---HHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhcc
Q 010532 268 EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG----D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (508)
Q Consensus 268 ~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~----~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (508)
++++++.+|++|.++... ++.++..|+++++.+. + ...+++.++++++|++.++|+++..+.+....
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----- 328 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD----- 328 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----
Confidence 999999999999998876 6677999999999753 2 36788999999999999999999987641000
Q ss_pred ChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCc
Q 010532 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~ 419 (508)
. ...+++|.+++||+++++++.+.+++.+|+++++.||+
T Consensus 329 ---------------------------------~--------~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~ 367 (632)
T PRK07529 329 ---------------------------------G--------HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGL 367 (632)
T ss_pred ---------------------------------C--------CCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecc
Confidence 0 01148999999999999999999999999999999999
Q ss_pred ccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcc--cCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCc
Q 010532 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY--DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496 (508)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~--~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw 496 (508)
||++.++..+........+++|+|+|+++++|+.+++++. .+++.|+.|||+|+||+++.||+++++ +...| .+||
T Consensus 368 TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw 446 (632)
T PRK07529 368 TEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGW 446 (632)
T ss_pred cccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCc
Confidence 9998877666544344558999999999999975333221 445567999999999999999998765 44555 7899
Q ss_pred eecCcccccc
Q 010532 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|++.
T Consensus 447 ~~TGDlg~~d 456 (632)
T PRK07529 447 LNTGDLGRID 456 (632)
T ss_pred eEcCcEEEEc
Confidence 9999999974
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=440.58 Aligned_cols=390 Identities=19% Similarity=0.213 Sum_probs=315.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+.++.+++++.++++||++|+++. + +++||+||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 48 ~~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la 118 (549)
T PRK07788 48 YGPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYA 118 (549)
T ss_pred hchHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 458999999999999999999864 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++..+++.++++++|++.+....+..... ....+..++....... ........+
T Consensus 119 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~ 190 (549)
T PRK07788 119 AGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPP-DLGRLRAWGGNPDDDE-------PSGSTDETL 190 (549)
T ss_pred HHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhcc-ccccceEEEEecCccc-------cCCcCcccH
Confidence 99999999999999999999999999999999999877665544322 1133333332221110 001235567
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++....... ..+...+++++++|||||||.||+|.++|+++...+..+... ..+..+++++...|++|.+|
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p~~~~~g 262 (549)
T PRK07788 191 DDLIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSR-----VPFRAGETTLLPAPMFHATG 262 (549)
T ss_pred HHHhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhh-----CCCCcCCeEEEccchHHHHH
Confidence 7776543221 122345788999999999999999999999998887764433 36778899999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcC
Q 010532 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (508)
+...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......
T Consensus 263 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------- 317 (549)
T PRK07788 263 WAHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL------------------------- 317 (549)
T ss_pred HHHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc-------------------------
Confidence 9877778999999998865 99999999999999999999999998865321100
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCccc
Q 010532 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G 441 (508)
. ....+++|.+++||+++++++.+.+++.++..+++.||+||++.++..........++++|
T Consensus 318 ----------~--------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG 379 (549)
T PRK07788 318 ----------A--------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVG 379 (549)
T ss_pred ----------C--------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcc
Confidence 0 0011489999999999999999999999999999999999998766544433233457899
Q ss_pred ccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 442 ~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+|+++++++|+| +++..++. |+.|||+|+|+.++.||+++++. .+.+|||+|||+|+++
T Consensus 380 ~~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~ 438 (549)
T PRK07788 380 RPPKGVTVKILD-ENGNEVPR--GVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFD 438 (549)
T ss_pred cCCCCcEEEEEC-CCcCCCCC--CCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEc
Confidence 999999999999 77776655 58999999999999999998875 2358999999999874
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=444.68 Aligned_cols=406 Identities=18% Similarity=0.238 Sum_probs=317.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.+...++|+++++++||++|+++. +...+..+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++||
T Consensus 56 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 132 (625)
T TIGR02188 56 LNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLA 132 (625)
T ss_pred EEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 356778888889999999999876 33234457899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCCC-CccEEEEeCCCChhhHHHH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTE-HLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~l~~vi~~~~~~~~~~~~~ 192 (508)
|+++|++++|+++.++.+++..+++.++++++|+++... ..+.+..... + .++.++++........
T Consensus 133 ~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 208 (625)
T TIGR02188 133 CARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC-PVSVEHVLVVRRTGNPVP--- 208 (625)
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhC-CCCccEEEEEcCCCCCcC---
Confidence 999999999999999999999999999999999987532 1222222212 3 4566666543221100
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
........++++..... .........++++++|+|||||||.||||+++|.+++....... ....++.++|+++
T Consensus 209 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~----~~~~~~~~~d~~~ 282 (625)
T TIGR02188 209 -WVEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTM----KYVFDIKDGDIFW 282 (625)
T ss_pred -ccccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHH----HhccCCCCCcEEE
Confidence 00011234666655432 22223345778999999999999999999999999865543321 1223677889999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (508)
+..|++|..+... ++.++..|+++++++. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------- 351 (625)
T TIGR02188 283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW----------- 351 (625)
T ss_pred ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc-----------
Confidence 9999999988765 6778999999999853 7899999999999999999999999886521100
Q ss_pred HHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccCC
Q 010532 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~ 423 (508)
.+. ...+++|.+++||+++++++.+++.+.++ +++++.||+||++
T Consensus 352 ------------------------~~~--------~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~ 399 (625)
T TIGR02188 352 ------------------------VKK--------HDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETG 399 (625)
T ss_pred ------------------------ccc--------CCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccC
Confidence 000 11248999999999999999999998875 7899999999999
Q ss_pred cceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---ccCce
Q 010532 424 AGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWF 497 (508)
Q Consensus 424 ~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~gw~ 497 (508)
+.++...+.. ...++++|+|++|++++|+| ++|..++ +.|+.|||+|+| |+++.|||++++.+.+.+ .+|||
T Consensus 400 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~ 477 (625)
T TIGR02188 400 GIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYY 477 (625)
T ss_pred CceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEE
Confidence 8766544431 23458999999999999999 8777665 255899999999 689999999999887776 38999
Q ss_pred ecCcccccc
Q 010532 498 HTGCPHLFL 506 (508)
Q Consensus 498 ~TGD~g~~~ 506 (508)
+|||+|+++
T Consensus 478 ~TGDl~~~d 486 (625)
T TIGR02188 478 FTGDGARRD 486 (625)
T ss_pred ECCceEEEc
Confidence 999999874
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=426.25 Aligned_cols=385 Identities=28% Similarity=0.451 Sum_probs=297.2
Q ss_pred HHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCe
Q 010532 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129 (508)
Q Consensus 50 l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 129 (508)
|+++|+++||++|+++. +. +++||+||.++++++|..|++.|+++||+|+|+++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 67899999999999871 12 68999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCChHHHHHHHHhcCceEEEE----cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHH
Q 010532 130 CVPLYDTLGAGAVEFIICHSGVSIAFV----EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205 (508)
Q Consensus 130 ~vpl~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l 205 (508)
++|++|.++.+++.++++.++++++|+ +......+....... .....++.++...... .+.+
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~ 138 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQE-DPSSSIIILDRDDLPK-------------KEAL 138 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTS-TTTEEEEEESHSSCTT-------------CHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhccc-cccccccccccccccc-------------cccc
Confidence 999999999999999999999999997 222222233332221 2334455554322110 0111
Q ss_pred HHcccCCCCCCCC-CCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHH-
Q 010532 206 LQLGENKQFDLPV-KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR- 283 (508)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~- 283 (508)
.......... .. ..++++++++|||||||.||+|.++|+++++.+..+. +... .+++ |++++.+|++|.+|+
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~ 212 (417)
T PF00501_consen 139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLI 212 (417)
T ss_dssp HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHH
T ss_pred cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeecccccccccc
Confidence 1111000000 00 0568999999999999999999999999999987753 1111 1223 599999999999999
Q ss_pred HHHHHHHHcCCEEEEecC-C---HHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhh
Q 010532 284 AIEEVFISNGAAIGFWRG-D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (508)
Q Consensus 284 ~~~~~~l~~G~~vv~~~~-~---~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (508)
...+.++..|+++++++. . +..+++.++++++++++++|++++.+.+..... ...
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~~-------------------- 271 (417)
T PF00501_consen 213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TKI-------------------- 271 (417)
T ss_dssp HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HHG--------------------
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-ccc--------------------
Confidence 568888999999999986 2 467899999999999999999999987621111 000
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceEeccCcccCCcceeccC-CCCcccC
Q 010532 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSL-PNEMSMI 437 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~-~~~~~~~ 437 (508)
.....+++|.++++|+++++++.+.+++.++. .+++.||+||++.+++... .......
T Consensus 272 --------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 331 (417)
T PF00501_consen 272 --------------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP 331 (417)
T ss_dssp --------------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred --------------------cccccccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence 00011369999999999999999999999987 9999999999999987663 2223345
Q ss_pred CcccccccCeeEEEeecCC-CcccCCCCCCCceEEEecCcccccccCChhhhhhhcc-cCceecCcccccc
Q 010532 438 GTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGCPHLFL 506 (508)
Q Consensus 438 ~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~-~gw~~TGD~g~~~ 506 (508)
+++|+|+|+++++|+| ++ +..++ .|+.|||+|+||+++.||+++|+.+.+.|. +|||+|||+|+++
T Consensus 332 ~~~G~~~~~~~~~ivd-~~~~~~~~--~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d 399 (417)
T PF00501_consen 332 GSVGKPLPGVEVKIVD-PNTGEPLP--PGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLD 399 (417)
T ss_dssp TSEBEESTTEEEEEEC-TTTSSBES--TTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEE
T ss_pred cccccccccccccccc-cccccccc--ccccccccccCCccceeeeccccccccccccccceecceEEEEC
Confidence 8899999999999999 55 66554 458999999999999999999999999995 4899999999985
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=432.43 Aligned_cols=393 Identities=23% Similarity=0.249 Sum_probs=317.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.+.|++.++.+||++|+++. +...+.++.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++||
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 357999999999999999999876 43334457899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
|+++|++++|+++.++.+++..+++.++++++|+++... ..+.+... ..+.++.++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------ 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRP-ELPALRHVVVVGGDG------------ 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhh-hCCCcceEEEecCCC------------
Confidence 999999999999999999999999999999999987641 11222211 224556666655432
Q ss_pred EEeeHHHHHHcccC-------CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcE
Q 010532 198 AVYSWDEFLQLGEN-------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (508)
Q Consensus 198 ~~~~~~~l~~~~~~-------~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
..++.++...... .........++++++++|||||||.||+|+++|+++...+......+ .+.++++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~ 240 (547)
T PRK13295 167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV 240 (547)
T ss_pred -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence 1234443322100 01111234668999999999999999999999999988887744433 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHH
Q 010532 271 YVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (508)
Q Consensus 271 ~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (508)
+++.+|++|..++.. ++.++..|+++++.+. ++..+++.++++++|.+.++|.++..+.+......
T Consensus 241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~------------ 308 (547)
T PRK13295 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESG------------ 308 (547)
T ss_pred EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccC------------
Confidence 999999999988765 6777999999999876 89999999999999999999999988765321100
Q ss_pred HHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceec
Q 010532 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 428 (508)
...+++|.+++||+++++++.+.+++.+++++++.||+||++.++..
T Consensus 309 ---------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 355 (547)
T PRK13295 309 ---------------------------------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLT 355 (547)
T ss_pred ---------------------------------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeec
Confidence 01147999999999999999999999899999999999999887665
Q ss_pred cCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 429 SLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 429 ~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+.... ....+++|+|+++++++|+| +++.+++ .|+.|||+|+|+.++.||+++++.+... .+|||+|||+|++.
T Consensus 356 ~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~ 430 (547)
T PRK13295 356 KLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP--AGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARID 430 (547)
T ss_pred cCCCcchhccCccccccCCcEEEEEC-CCCCCCC--CCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEc
Confidence 54322 22246899999999999999 7776554 4589999999999999999999988776 68999999999874
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=436.06 Aligned_cols=397 Identities=18% Similarity=0.256 Sum_probs=321.2
Q ss_pred CCCCHHHHHHHHHH-hCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 42 GMESCWDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 42 ~~~tl~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
..+.+.++++++++ .+||++|+.+. +.. ..+++||+||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45666788988887 57999999876 432 2368999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|||+++|++++|+++.++.+++.++++.++++++|++.......... ..+.++.++..+.... ......
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPAD---DLPSLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchh---cCCCceEEEEECCCcC--------CCcCcc
Confidence 99999999999999999999999999999999999988765443221 2245566666553321 011244
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
.+++++..... ........++++++++|||||||.||+|.++|+++...+...... ..+.++|++++..|++|.
T Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~ 258 (570)
T PRK04319 185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-----LDLHEDDVYWCTADPGWV 258 (570)
T ss_pred CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHh-----cCCCCCceEEecCChHHh
Confidence 56666554322 222334467899999999999999999999999998877664433 367788999999999998
Q ss_pred HHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 281 FDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 281 ~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
.|... .+.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 316 (570)
T PRK04319 259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL---------------------- 316 (570)
T ss_pred hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence 88765 6677999999998753 8999999999999999999999999886521000
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccC
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~ 437 (508)
....+ .+++|.+++||+++++++.+++++.+|.++++.||+||+++.+..........+
T Consensus 317 -------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~ 375 (570)
T PRK04319 317 -------------VKKYD--------LSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP 375 (570)
T ss_pred -------------cccCC--------cccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence 00001 137999999999999999999999999999999999999887654443333345
Q ss_pred CcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhcccCceecCcccccc
Q 010532 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 438 ~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+++|+|+|+++++|+| +++.+++ .|+.|||+|+| |+++.||||+++.+.+.|.+|||+|||+|++.
T Consensus 376 ~~~G~p~~g~~~~i~d-~~~~~~~--~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~ 443 (570)
T PRK04319 376 GSMGKPLPGIEAAIVD-DQGNELP--PNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMD 443 (570)
T ss_pred CcCcCCCCCCEEEEEC-CCCCCCC--CCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEEC
Confidence 8999999999999999 7777664 55899999997 89999999999999999999999999999874
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=438.91 Aligned_cols=406 Identities=14% Similarity=0.134 Sum_probs=310.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.+.+.++++++++++|+++|+++. +...+..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++||
T Consensus 51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA 127 (628)
T TIGR02316 51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA 127 (628)
T ss_pred eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 455678898888899999999875 33333447899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCCCCccEEEEeCCCChhhHHHHh
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~ 193 (508)
|+++|++++|+++.++.+++..++++++|+++|+++... ..+.............+++++...... .
T Consensus 128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~ 203 (628)
T TIGR02316 128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----R 203 (628)
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence 999999999999999999999999999999999986431 111111111113345666665321100 0
Q ss_pred hcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHH-hhhhhhhhhcccCCCCCcEEE
Q 010532 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI-AGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~-~~~~~~~~~~~~~~~~~~~~l 272 (508)
........++++.........+.....++++++|+|||||||.||||+++|.+++... ..+.. ..++.++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~-----~~~~~~~d~~~ 278 (628)
T TIGR02316 204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWA-----IFGIRAGQVMF 278 (628)
T ss_pred cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHH-----hcCCCCCcEEE
Confidence 0011134566665543222222223467899999999999999999999999976443 33222 23678889999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (508)
+..|++|..++.. ++.+++.|+++++++. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------- 347 (628)
T TIGR02316 279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW----------- 347 (628)
T ss_pred EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc-----------
Confidence 9999999988754 6778999999999863 6899999999999999999999998875421000
Q ss_pred HHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcce
Q 010532 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT 426 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~ 426 (508)
.. ....++||.+++||+++++++.+++++.++..+++.||+||++..+
T Consensus 348 ------------------------~~--------~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 395 (628)
T TIGR02316 348 ------------------------LR--------KHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV 395 (628)
T ss_pred ------------------------cc--------cCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence 00 1112489999999999999999999999999999999999998654
Q ss_pred eccCCCC---cccCCcccccccCeeEEEeecC-CCcccCCCCCCCceEEEecC---cccccccCChhhhhhhc----ccC
Q 010532 427 FVSLPNE---MSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVM----VDG 495 (508)
Q Consensus 427 ~~~~~~~---~~~~~s~G~p~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~~~~~f----~~g 495 (508)
+...... ....+++|+|+||++++|+| + ++++++ .|+.|||+|+|| +++.|||++++.+.+.+ .+|
T Consensus 396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~~~--~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~ 472 (628)
T TIGR02316 396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGRPCG--PNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRP 472 (628)
T ss_pred ecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCCCCC--CCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCC
Confidence 4333221 22348899999999999999 5 565554 458999999998 57899999998877654 467
Q ss_pred ceecCcccccc
Q 010532 496 WFHTGCPHLFL 506 (508)
Q Consensus 496 w~~TGD~g~~~ 506 (508)
||+|||+|+++
T Consensus 473 ~~~TGD~g~~d 483 (628)
T TIGR02316 473 LYSSFDWGIRD 483 (628)
T ss_pred EEECCceEEEc
Confidence 99999999875
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=439.06 Aligned_cols=402 Identities=18% Similarity=0.250 Sum_probs=313.4
Q ss_pred HHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHh
Q 010532 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125 (508)
Q Consensus 46 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 125 (508)
..++|+++++++||++|+++. +...+..+++||+||.+++.++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 145 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACAR 145 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 467788889999999999875 33223457899999999999999999999999999999999999999999999999
Q ss_pred hCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 126 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
+|++++|+++.++.+++.++++.++++++|+++... ..+...... .+.++.++..+...... ....
T Consensus 146 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~ 220 (637)
T PRK00174 146 IGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALAN-CPSVEKVIVVRRTGGDV----DWVE 220 (637)
T ss_pred cCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHh-CCCccEEEEEcCCCCCc----CcCC
Confidence 999999999999999999999999999999987532 112222111 14556666654332100 0001
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecC
Q 010532 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 276 (508)
.....++++.... ..........++++++|+|||||||.||||+++|++++....... .....+.++|++++.+|
T Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~ 295 (637)
T PRK00174 221 GRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTM----KYVFDYKDGDVYWCTAD 295 (637)
T ss_pred CCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHH----HhccCCCCCcEEEEcCC
Confidence 1233466665432 222223345678999999999999999999999999876543321 12236778899999999
Q ss_pred hHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHH
Q 010532 277 LAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (508)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
++|..+... ++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+.+.....
T Consensus 296 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------- 360 (637)
T PRK00174 296 VGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH--------------- 360 (637)
T ss_pred chHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc---------------
Confidence 999988764 6777999999999753 6899999999999999999999999876521100
Q ss_pred HHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccCCccee
Q 010532 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCAGTF 427 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~~~~ 427 (508)
... ...++||.+++||+++++++.+++++.++ +++++.||+||+++.+.
T Consensus 361 --------------------~~~--------~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 412 (637)
T PRK00174 361 --------------------PKK--------YDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMI 412 (637)
T ss_pred --------------------ccc--------CCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceE
Confidence 000 01148999999999999999999998875 78999999999988766
Q ss_pred ccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---ccCceecCc
Q 010532 428 VSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFHTGC 501 (508)
Q Consensus 428 ~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~gw~~TGD 501 (508)
...+.. ...++++|+|++|++++|+| +++..++. |+.|||+|+| |+++.|||++++.+.+.+ .+|||+|||
T Consensus 413 ~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~--g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD 489 (637)
T PRK00174 413 TPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEG--GEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGD 489 (637)
T ss_pred ecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCC--CCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCc
Confidence 544332 22347899999999999999 88776654 5899999999 689999999999887766 479999999
Q ss_pred ccccc
Q 010532 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|+++
T Consensus 490 l~~~d 494 (637)
T PRK00174 490 GARRD 494 (637)
T ss_pred eEEEc
Confidence 99874
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=430.04 Aligned_cols=414 Identities=21% Similarity=0.274 Sum_probs=311.4
Q ss_pred CceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCC
Q 010532 24 GPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEE 102 (508)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~ 102 (508)
++++++..++..++.. ...++.+.+... +.+|+++|+++. +.. .++||+||.++++++|+.|.+ .|+++
T Consensus 22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~ 91 (560)
T PLN02574 22 TGIYSSKHPPVPLPSD--PNLDAVSFIFSH-HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQ 91 (560)
T ss_pred CeeecCCCCCCCCCCC--CCCCHHHHHhcC-cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5667766443333222 233444444433 678999999864 322 369999999999999999998 99999
Q ss_pred CcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeC
Q 010532 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182 (508)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~ 182 (508)
||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.+++++++++.+....+.... .. ++.+.
T Consensus 92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ 164 (560)
T PLN02574 92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG------VP-VIGVP 164 (560)
T ss_pred CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC------Cc-EEecC
Confidence 999999999999999999999999999999999999999999999999999999987665554321 11 22222
Q ss_pred CCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcc
Q 010532 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262 (508)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~ 262 (508)
...... ........+++++..... ....+...++++++++|||||||.||+|+++|+++...+..+........
T Consensus 165 ~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 238 (560)
T PLN02574 165 ENYDFD-----SKRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQY 238 (560)
T ss_pred cccccc-----cCccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccc
Confidence 110000 000112345555544321 12233446789999999999999999999999999887765432111111
Q ss_pred cCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccC
Q 010532 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (508)
Q Consensus 263 ~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 340 (508)
.....+++++..+|++|.+|+.. +..++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.....
T Consensus 239 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----- 313 (560)
T PLN02574 239 EYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----- 313 (560)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc-----
Confidence 12235688999999999999876 4556888999988876 9999999999999999999999999987521100
Q ss_pred hhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCc
Q 010532 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGL 419 (508)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~ 419 (508)
. ....+++|.+++||+++++++.+.+.+.+ ++.+++.||+
T Consensus 314 -------------------------------~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~ 354 (560)
T PLN02574 314 -------------------------------C--------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354 (560)
T ss_pred -------------------------------c--------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccc
Confidence 0 01114799999999999999999998887 6899999999
Q ss_pred ccCCcceeccCCC-CcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCce
Q 010532 420 TETCAGTFVSLPN-EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (508)
Q Consensus 420 tE~~~~~~~~~~~-~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~ 497 (508)
||++.+++..... .....+++|+|+++++++|+|.+++..+ +.|+.|||+|+|++++.||+++++.+.+.| .+|||
T Consensus 355 tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~--~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 432 (560)
T PLN02574 355 TESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL--PPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWL 432 (560)
T ss_pred cccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCC--CCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCc
Confidence 9998765432222 2234589999999999999994445444 456899999999999999999999999888 79999
Q ss_pred ecCcccccc
Q 010532 498 HTGCPHLFL 506 (508)
Q Consensus 498 ~TGD~g~~~ 506 (508)
+|||+|+++
T Consensus 433 ~TGDlg~~~ 441 (560)
T PLN02574 433 RTGDIAYFD 441 (560)
T ss_pred ccceEEEEE
Confidence 999999874
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=423.39 Aligned_cols=412 Identities=24% Similarity=0.293 Sum_probs=325.5
Q ss_pred CCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCC
Q 010532 21 PSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (508)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv 100 (508)
.+.+-+|++....... .+..|+.+.+.++++++||++|+++. +.. +++||.||.++++++|+.|.+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~ 72 (537)
T PLN02246 4 ASEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGI 72 (537)
T ss_pred ccceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCC
Confidence 4566788888665433 33478999999999999999999864 322 579999999999999999999999
Q ss_pred CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEE
Q 010532 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180 (508)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~ 180 (508)
++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++.++++++|++......+...... ..+ .++.
T Consensus 73 ~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~ 149 (537)
T PLN02246 73 RQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVT 149 (537)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEE
Confidence 9999999999999999999999999999999999999999999999999999999998776655443221 122 3444
Q ss_pred eCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhh
Q 010532 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES 260 (508)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~ 260 (508)
++.... ....+.++..... ...+.....++++++++|||||||.||+|+++|+++...+...... ..
T Consensus 150 ~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~-~~ 216 (537)
T PLN02246 150 IDDPPE-----------GCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG-EN 216 (537)
T ss_pred eCCCCC-----------CceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhc-cc
Confidence 443211 1344555544321 1222333467899999999999999999999999998876653221 01
Q ss_pred cccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhc
Q 010532 261 VNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (508)
Q Consensus 261 ~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (508)
....+..+|+++..+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..|.+....
T Consensus 217 ~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~---- 292 (537)
T PLN02246 217 PNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV---- 292 (537)
T ss_pred cccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc----
Confidence 1336788999999999999999866 5566999999999976 899999999999999999999999887642100
Q ss_pred cChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEecc
Q 010532 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGY 417 (508)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~y 417 (508)
... ..+++|.+++||+++++++.+.+++.+ +..+++.|
T Consensus 293 ---------------------------------~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~Y 331 (537)
T PLN02246 293 ---------------------------------EKY--------DLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGY 331 (537)
T ss_pred ---------------------------------ccc--------CccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccc
Confidence 000 113799999999999999999999988 67899999
Q ss_pred CcccCCcceeccCC----CCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-
Q 010532 418 GLTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (508)
Q Consensus 418 G~tE~~~~~~~~~~----~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f- 492 (508)
|+||++.+++.+.. .....++++|+|+++++++|+|.+++..+ +.|+.|||+|+|+.++.||+++++.+.+.|
T Consensus 332 G~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~ 409 (537)
T PLN02246 332 GMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASL--PRNQPGEICIRGPQIMKGYLNDPEATANTID 409 (537)
T ss_pred cccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcC--CCCCceEEEEECCchhccccCCchhhhhccc
Confidence 99999876554321 11123478999999999999983344444 455899999999999999999999999988
Q ss_pred ccCceecCcccccc
Q 010532 493 VDGWFHTGCPHLFL 506 (508)
Q Consensus 493 ~~gw~~TGD~g~~~ 506 (508)
.+|||+|||+|++.
T Consensus 410 ~~~~~~TGD~~~~~ 423 (537)
T PLN02246 410 KDGWLHTGDIGYID 423 (537)
T ss_pred CCCCeeecceEEEe
Confidence 68999999999864
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=428.16 Aligned_cols=389 Identities=18% Similarity=0.192 Sum_probs=300.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCC----CceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKA----GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.|+.+.|++.++++||++|+++. +... ..++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 67889999999999999999875 3321 2235799999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC--CHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK--KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+|||+++|++++|+++.++.+++..++++++++++|++.. ....+.... ....+.++.++... ..
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~~ 149 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------LW 149 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------cc
Confidence 9999999999999999999999999999999999998752 111111111 12233333332210 00
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
....++++...............++++++++|||||||.||+|.++|+++...+......+ ++.++++.++.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl 224 (552)
T PRK09274 150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPL 224 (552)
T ss_pred CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCH
Confidence 1223455442222222223345678999999999999999999999999998887755544 67788999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEec--------CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010532 278 AHIFDRAIEEVFISNGAAIGFWR--------GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~--------~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
+|.++ +..|.++++.+ .++..+++.|+++++|+++++|++++.+.+......
T Consensus 225 ~~~~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------- 284 (552)
T PRK09274 225 FALFG-------PALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG------------- 284 (552)
T ss_pred HHhhh-------hhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC-------------
Confidence 87644 34577777653 278999999999999999999999999876322110
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh--CCceEeccCcccCCccee
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTF 427 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~ 427 (508)
...+++|.+++||+++++++.+.+++.+ |+++++.||+||++++++
T Consensus 285 --------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 332 (552)
T PRK09274 285 --------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS 332 (552)
T ss_pred --------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence 0114799999999999999999999998 469999999999988765
Q ss_pred ccCCC---------CcccCCcccccccCeeEEEeecCCC-------cccCCCCCCCceEEEecCcccccccCChhhhhhh
Q 010532 428 VSLPN---------EMSMIGTVGPPVPNVDVCLESVPEM-------EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491 (508)
Q Consensus 428 ~~~~~---------~~~~~~s~G~p~~~~~v~Iv~~~~~-------~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~ 491 (508)
..... ......++|+|+|+++++|+| +++ ...+++.|+.|||+|+|+.++.||||+++.+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~ 411 (552)
T PRK09274 333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLA 411 (552)
T ss_pred ecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhh
Confidence 44322 111224789999999999998 432 1234556689999999999999999999999887
Q ss_pred c---ccC--ceecCcccccc
Q 010532 492 M---VDG--WFHTGCPHLFL 506 (508)
Q Consensus 492 f---~~g--w~~TGD~g~~~ 506 (508)
| .+| ||+|||+|+++
T Consensus 412 ~~~~~~g~~w~~TGDlg~~d 431 (552)
T PRK09274 412 KIPDGQGDVWHRMGDLGYLD 431 (552)
T ss_pred hcccCCCCcEEEcCCEEEEc
Confidence 6 367 99999999974
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=421.32 Aligned_cols=396 Identities=22% Similarity=0.308 Sum_probs=328.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
+++.++.+.|.+.++.+||++|+.+. + +++||+||.+++.++|..|.+.|+++||+|+++++|++++++++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~ 72 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFG----D-----QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA 72 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeC----C-----CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 46689999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
+||+++|++++|+++..+.+++..+++.++++++++++........... ....++.++......... ......
T Consensus 73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~ 145 (513)
T PRK07656 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT-RLPALEHVVICETEEDDP------HTEKMK 145 (513)
T ss_pred HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHh-ccCCccEEEEEcCccccc------Cccccc
Confidence 9999999999999999999999999999999999999887665544332 224555665554332210 011234
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
+|+++...... ........++++++++|||||||.||+|.++|.++...+......+ .+..++++++.+|++|.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 219 (513)
T PRK07656 146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV 219 (513)
T ss_pred cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence 67777654322 1223345778999999999999999999999999988887754444 67889999999999999
Q ss_pred HHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 281 ~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|.++..+.+.....
T Consensus 220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------- 276 (513)
T PRK07656 220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS----------------------- 276 (513)
T ss_pred HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC-----------------------
Confidence 99876 6677999999988765 8999999999999999999999999987521110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceEeccCcccCCcceeccCCCCccc-
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPNEMSM- 436 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~~~~~- 436 (508)
.. ..+++|.+++||+++++++.+.+++.++. .+++.||+||+|++...+.......
T Consensus 277 --------------~~--------~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 334 (513)
T PRK07656 277 --------------AE--------DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT 334 (513)
T ss_pred --------------CC--------CccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence 00 11389999999999999999999999998 8999999999988887766544322
Q ss_pred -CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 437 -IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 437 -~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
++++|.|+++++++|+| +++..++ .|+.|||+++|+.++.||+++++.+...+ .+|||+|||+|++.
T Consensus 335 ~~~~vG~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~ 403 (513)
T PRK07656 335 VAGTIGTAIAGVENKIVN-ELGEEVP--VGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLD 403 (513)
T ss_pred cCCCccccCCCcEEEEEC-CCCCCCC--CCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEc
Confidence 58999999999999999 7776555 45899999999999999999999998888 49999999999874
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=427.58 Aligned_cols=401 Identities=21% Similarity=0.224 Sum_probs=305.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch
Q 010532 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (508)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~ 114 (508)
.+.+.+....++.+.|.+.++++|+++|+++. ++. +.+||+||.++++++|+.|.+.|+++||+|+++++|++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~ 77 (540)
T PRK05857 5 KFQAMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGP 77 (540)
T ss_pred cccccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCH
Confidence 34556677789999999999999999999865 442 56999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010532 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 115 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
++++++|||+++|++++|+++.++.+++.++++.++++.+|+++......... ......+. ++..+.....
T Consensus 78 e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~------- 148 (540)
T PRK05857 78 ETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAV-PEALHSIP-VIAVDIAAVT------- 148 (540)
T ss_pred HHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccc-cccccccc-eeEeeccccc-------
Confidence 99999999999999999999999999999999999999999997653211111 11111222 2222211100
Q ss_pred cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
.. ..+.... ......+...++++++++|||||||.||||.++|+++.++...+... .........+++++..
T Consensus 149 ----~~-~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 220 (540)
T PRK05857 149 ----RE-SEHSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSP 220 (540)
T ss_pred ----cc-ccccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeec
Confidence 00 0000000 00111233467899999999999999999999999998765442211 0111244567899999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010532 275 LPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
+|++|..++...+.+++.|+++++.+.++..+++.|+++++++++++|++++.+.+......
T Consensus 221 ~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------ 282 (540)
T PRK05857 221 LPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------ 282 (540)
T ss_pred CCccccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC------------------
Confidence 99999988877777899999988766689999999999999999999999998865321100
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-
Q 010532 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE- 433 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~- 433 (508)
...+++|.+++||++++....+++ +.+++++++.||+||++..........
T Consensus 283 ---------------------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~ 334 (540)
T PRK05857 283 ---------------------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDG 334 (540)
T ss_pred ---------------------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeecccccc
Confidence 011479999999999988877654 467999999999999986544332221
Q ss_pred ---cccCCcccccccCeeEEEeecCCCccc-C---CCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYD-A---LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~-~---~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
...++++|+|++|++++|++ +++... + .+.++.|||+|+||+++.||+++++.+.+.|.+|||+|||+|++.
T Consensus 335 ~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d 413 (540)
T PRK05857 335 SIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERR 413 (540)
T ss_pred cccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEc
Confidence 11347899999999999999 665532 1 124578999999999999999999999999999999999999974
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=420.92 Aligned_cols=405 Identities=22% Similarity=0.246 Sum_probs=317.6
Q ss_pred ecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEE
Q 010532 28 RSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107 (508)
Q Consensus 28 ~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~ 107 (508)
|+.....++... .++.+.++++++.+|+++|++.. +...+..+.+||+||.+++.++|+.|++.|+++||+|+
T Consensus 10 ~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~ 82 (538)
T TIGR03208 10 RAASKAAGLWRD----RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVS 82 (538)
T ss_pred hhhhhhcCcccc----CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 444444555432 58999999999999999999864 32222346899999999999999999999999999999
Q ss_pred EEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH----HHhhcCCCCCCCccEEEEeCC
Q 010532 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSK 183 (508)
Q Consensus 108 i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~l~~vi~~~~ 183 (508)
++++|++++++++|||+++|++++|+++..+.+++.++++.+++++++++..... ...+......+..+.++..+.
T Consensus 83 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (538)
T TIGR03208 83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG 162 (538)
T ss_pred EECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC
Confidence 9999999999999999999999999999999999999999999999999876421 111111122244556666543
Q ss_pred CChhhHHHHhhcCcEEeeHHHHHHcccCCC-------CCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhh
Q 010532 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQ-------FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256 (508)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~ 256 (508)
... ..+++++....... .......++++++++|||||||.||+|+++|+++...+.....
T Consensus 163 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~ 229 (538)
T TIGR03208 163 DGD-------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE 229 (538)
T ss_pred CCC-------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence 211 12333332111000 1112346789999999999999999999999999988877544
Q ss_pred hhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHH
Q 010532 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (508)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 334 (508)
.+ .+..++++++.+|++|..++.. ++.+++.|+++++.+. ++..+++.+++++++++.++|.++..+......
T Consensus 230 ~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~ 304 (538)
T TIGR03208 230 RL-----ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304 (538)
T ss_pred hc-----CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc
Confidence 33 6778899999999999988765 6677999999988876 899999999999999999999999887653211
Q ss_pred hhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceE
Q 010532 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414 (508)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~ 414 (508)
... ..+++|.+++||+++++.+.+.+++.+++.++
T Consensus 305 ~~~---------------------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~ 339 (538)
T TIGR03208 305 SGA---------------------------------------------PVPSLFTFLCAGAPIPGILVERAWELLGALIV 339 (538)
T ss_pred cCC---------------------------------------------CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEE
Confidence 100 11378999999999999999999988999999
Q ss_pred eccCcccCCcceeccCCCCc-ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc
Q 010532 415 QGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493 (508)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~~-~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~ 493 (508)
+.||+||+++++........ ....++|+|+++++++|++ +++..++ .|+.|||+|+|++++.||+++++.+.. ..
T Consensus 340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~ 415 (538)
T TIGR03208 340 SAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLS--QGETGRLLVRGCSNFGGYLKRPHLNST-DA 415 (538)
T ss_pred eeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCc--CCCCcEEEEecCcccccccCCcccccc-cC
Confidence 99999999887665543321 2236789999999999999 7776554 458999999999999999999987653 26
Q ss_pred cCceecCcccccc
Q 010532 494 DGWFHTGCPHLFL 506 (508)
Q Consensus 494 ~gw~~TGD~g~~~ 506 (508)
+|||+|||+|++.
T Consensus 416 ~~~~~TGD~~~~~ 428 (538)
T TIGR03208 416 EGWFDTGDLAFQD 428 (538)
T ss_pred CCceeccceEEEC
Confidence 8999999999884
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=421.21 Aligned_cols=403 Identities=22% Similarity=0.332 Sum_probs=311.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
..+.|+.+.|++.++++|+++|+++. + +.+||.||.+++.++|+.|.+ .|+++||+|+|+++|+++++++
T Consensus 21 ~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~ 91 (562)
T PRK05677 21 DEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVA 91 (562)
T ss_pred CccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence 44569999999999999999999753 2 479999999999999999997 6999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC--h-hhHHHHh---
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK--P-EQREEIE--- 193 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~--~-~~~~~~~--- 193 (508)
+|||+++|++++|+++..+.+++.++++.++++++|++......+.+.... ..++.++...... . .......
T Consensus 92 ~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (562)
T PRK05677 92 VFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVV 169 (562)
T ss_pred HHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccch
Confidence 999999999999999999999999999999999999987765544333221 1233443322110 0 0000000
Q ss_pred --------h-cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccC
Q 010532 194 --------K-YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK 264 (508)
Q Consensus 194 --------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~ 264 (508)
. .......+.+.+..............++++++++|||||||.||+|+++|+++...+......+ ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~ 246 (562)
T PRK05677 170 KHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GSN 246 (562)
T ss_pred hhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---ccC
Confidence 0 0012334555554433222222334678999999999999999999999999987765543322 112
Q ss_pred CC-CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccC
Q 010532 265 LT-SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (508)
Q Consensus 265 ~~-~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 340 (508)
.. ..+++++.+|++|.+++.. ....+..|..+++.+. ++..+++.|+++++|.++++|.++..+.+...
T Consensus 247 ~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------- 319 (562)
T PRK05677 247 LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------- 319 (562)
T ss_pred CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc-------
Confidence 22 3468899999999999875 5556778888777653 88999999999999999999999988764110
Q ss_pred hhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcc
Q 010532 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420 (508)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~t 420 (508)
....++ +++|.+++||+++++++.+.+++.+++++++.||+|
T Consensus 320 ------------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~t 361 (562)
T PRK05677 320 ------------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMT 361 (562)
T ss_pred ------------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCcc
Confidence 000011 379999999999999999999998999999999999
Q ss_pred cCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceec
Q 010532 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499 (508)
Q Consensus 421 E~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~T 499 (508)
|++.++....... ..++++|+|+++++++|+| +++..++. |+.|||+|+||.++.||+++++.+.+.| .+|||+|
T Consensus 362 E~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T 437 (562)
T PRK05677 362 ETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGNELPL--GEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKT 437 (562)
T ss_pred ccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCCCCCC--CCCeEEEEecCccchhhcCCchhhhhccCCCCcccc
Confidence 9987766554432 2347899999999999999 77766554 5899999999999999999999999999 6999999
Q ss_pred Ccccccc
Q 010532 500 GCPHLFL 506 (508)
Q Consensus 500 GD~g~~~ 506 (508)
||+|+++
T Consensus 438 GDlg~~~ 444 (562)
T PRK05677 438 GDIALIQ 444 (562)
T ss_pred cceEEEC
Confidence 9999875
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=419.90 Aligned_cols=384 Identities=18% Similarity=0.211 Sum_probs=308.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.++.++|.++++++||++|+++. + +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999854 2 36999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHH
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 203 (508)
+++|++++|+++.++.+++.++++.++++++|++.+....+....... +....++...+.. ....++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~ 180 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADC-PQATRIVAWTDED------------HDLTVE 180 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhc-cccceEEEecCCc------------ccccHH
Confidence 999999999999999999999999999999999987665544332211 2333333332211 012344
Q ss_pred HHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHH
Q 010532 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (508)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 283 (508)
++....... .+...+++.++++|||||||.||||.++|.++......+...+ .+..+++++...|++|.+++
T Consensus 181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~ 252 (537)
T PRK13382 181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF 252 (537)
T ss_pred HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence 444332111 1123467899999999999999999999999888777644433 56678899999999999998
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCC
Q 010532 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (508)
Q Consensus 284 ~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (508)
...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+.....
T Consensus 253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------- 305 (537)
T PRK13382 253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--------------------------- 305 (537)
T ss_pred HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence 777888999999988765 8999999999999999999999999876521100
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccc
Q 010532 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (508)
.+.. .+.++|.+++||+++++++.+.+.+.++..+++.||+||++.++..+.......++++|+
T Consensus 306 --------~~~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 369 (537)
T PRK13382 306 --------RNRY--------SGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR 369 (537)
T ss_pred --------cccC--------CccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence 0000 113799999999999999999999999999999999999998766554332334589999
Q ss_pred cccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 443 p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+++++++|+| +++.+++ .|+.|||+|+|++++.||+ ++.+. .|.+|||+|||++++.
T Consensus 370 p~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~ 427 (537)
T PRK13382 370 PAEGTEIRILD-QDFREVP--TGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLD 427 (537)
T ss_pred cCcCcEEEEEC-CCCCCCC--CCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEe
Confidence 99999999999 7776655 4589999999999999998 44444 3568999999999874
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=418.84 Aligned_cols=399 Identities=24% Similarity=0.398 Sum_probs=334.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
+....++.++|.++++.+|+++|+.+. +. .+||+||++++.++|+.|.+.|+++||+|+++++|+.+++++
T Consensus 2 ~~~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~ 72 (521)
T PRK06187 2 QDYPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEA 72 (521)
T ss_pred CcccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 356789999999999999999999875 33 499999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|+++..+.+++..+++.+++++++++.+....+.+..... +.++.++..++.... ......
T Consensus 73 ~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~ 145 (521)
T PRK06187 73 YFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-PTVRTVIVEGDGPAA------PLAPEV 145 (521)
T ss_pred HHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhcc-CCccEEEEecCcccc------cccccc
Confidence 9999999999999999999999999999999999999998777666554433 556667766554321 111234
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
..+.+++..... .........+++++++|||||||.||+|.++|.++.......... .++..++++++.+|++|
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~d~~~~~~~~~~ 219 (521)
T PRK06187 146 GEYEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW-----LKLSRDDVYLVIVPMFH 219 (521)
T ss_pred ccHHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHh-----hCCCCCCEEEEeCCchH
Confidence 566666654322 222334567889999999999999999999999999887775443 37888999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
.+++...+.++..|+++++.+. ++..+++.++++++|.++++|++++.+.+.....
T Consensus 220 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~----------------------- 276 (521)
T PRK06187 220 VHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY----------------------- 276 (521)
T ss_pred HhhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-----------------------
Confidence 9998876679999999999876 8999999999999999999999999887532110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCc----
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM---- 434 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~---- 434 (508)
..++ .++|.+++||+++++++.+.+.+.+++++++.||+||+++++........
T Consensus 277 --------------~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 334 (521)
T PRK06187 277 --------------FVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQ 334 (521)
T ss_pred --------------ccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccc
Confidence 0111 37899999999999999999999889999999999999887766554332
Q ss_pred -ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 435 -SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 435 -~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
...+++|+|+++++++|+| +++.+++.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++.
T Consensus 335 ~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~ 406 (521)
T PRK06187 335 WTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYID 406 (521)
T ss_pred cccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEc
Confidence 2458999999999999999 8887777655799999999999999999999999999989999999999874
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=419.24 Aligned_cols=411 Identities=20% Similarity=0.271 Sum_probs=320.7
Q ss_pred CCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcC
Q 010532 20 RPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCG 99 (508)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~g 99 (508)
|...+.+|++.+..... +...|+.+.+.+.++++|+++|+.+. .+. +.+||.||.+++.++|+.|.+.|
T Consensus 8 ~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g 76 (546)
T PLN02330 8 QEDNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLG 76 (546)
T ss_pred ccccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhC
Confidence 45667788888666532 34688999999999999999999764 222 46999999999999999999999
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEE
Q 010532 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi 179 (508)
+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++|+++.....+.... .. ++
T Consensus 77 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~~-~i 149 (546)
T PLN02330 77 LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------LP-VI 149 (546)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------Cc-EE
Confidence 999999999999999999999999999999999999999999999999999999999988776654321 12 33
Q ss_pred EeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCC--CCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhh
Q 010532 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (508)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~ 257 (508)
.++.... .....|++++....... .......++++++++|||||||.||+|.++|+++...+....
T Consensus 150 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~-- 217 (546)
T PLN02330 150 VLGEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSL-- 217 (546)
T ss_pred EecCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHh--
Confidence 3332110 12345666665432211 112334578999999999999999999999999987664321
Q ss_pred hhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHh
Q 010532 258 LESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (508)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 335 (508)
+ .........++.+..+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|.+.++|+++..+.+...
T Consensus 218 ~-~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-- 294 (546)
T PLN02330 218 F-SVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI-- 294 (546)
T ss_pred h-ccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc--
Confidence 1 11112234568999999999998875 5666999999988876 99999999999999999999999998765210
Q ss_pred hhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceE
Q 010532 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVL 414 (508)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~ 414 (508)
.+..++.. .++|.+++||+++++++.+++++.| +++++
T Consensus 295 -----------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~ 333 (546)
T PLN02330 295 -----------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQ 333 (546)
T ss_pred -----------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEE
Confidence 01111110 1579999999999999999999988 89999
Q ss_pred eccCcccCCcceeccCCCC----cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhh
Q 010532 415 QGYGLTETCAGTFVSLPNE----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490 (508)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~----~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~ 490 (508)
+.||+||++.+........ ....+++|+|+++++++|+|.+++..+ +.|+.|||+|+|+.++.||+|+++.+.+
T Consensus 334 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~--p~g~~Gel~v~g~~~~~gy~~~~~~~~~ 411 (546)
T PLN02330 334 EAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL--PKNTPGELCVRSQCVMQGYYNNKEETDR 411 (546)
T ss_pred ecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC--CCCCceEEEEecchhhhhhccCccchhh
Confidence 9999999986554332111 122368999999999999993344444 4558999999999999999999999988
Q ss_pred hc-ccCceecCcccccc
Q 010532 491 VM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 491 ~f-~~gw~~TGD~g~~~ 506 (508)
.| .+|||+|||+|++.
T Consensus 412 ~~~~~g~~~TGD~~~~~ 428 (546)
T PLN02330 412 TIDEDGWLHTGDIGYID 428 (546)
T ss_pred hccCCCceecccEEEEe
Confidence 88 68999999999875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=420.91 Aligned_cols=399 Identities=22% Similarity=0.293 Sum_probs=318.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCchhHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
+..++.+.|.+.++++|+++|+++. + +++||+||.+++.++|..|.+. |+++||+|+|+++|++++++++
T Consensus 8 ~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~ 78 (546)
T PRK08314 8 PETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY 78 (546)
T ss_pred CCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence 3568999999999999999999875 3 4699999999999999999998 9999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhH-----------
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR----------- 189 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~----------- 189 (508)
|||+++|++++|+++..+.+++.++++.++++++|++.+....+....... .++.++..........
T Consensus 79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (546)
T PRK08314 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR 156 (546)
T ss_pred HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence 999999999999999999999999999999999999988776665433221 2334443321100000
Q ss_pred ---HHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCC
Q 010532 190 ---EEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (508)
Q Consensus 190 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (508)
............|++...... ........++++++++|||||||.||+|.++|++++..+......+ .+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~ 229 (546)
T PRK08314 157 AEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST 229 (546)
T ss_pred cccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence 000001123445666654421 1223345678999999999999999999999999999887754433 678
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHH
Q 010532 267 SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344 (508)
Q Consensus 267 ~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~ 344 (508)
.+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+.+..
T Consensus 230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~------------ 297 (546)
T PRK08314 230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASP------------ 297 (546)
T ss_pred CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCC------------
Confidence 8999999999999999865 6677999999999986 8999999999999999999999998875410
Q ss_pred HHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCc
Q 010532 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424 (508)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~ 424 (508)
.....++ +++|.+++||+++++++.+++.+.+++++++.||+||++.
T Consensus 298 -------------------------~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~ 344 (546)
T PRK08314 298 -------------------------GLAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMA 344 (546)
T ss_pred -------------------------CccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEeccccccccc
Confidence 0011111 3789999999999999999999999999999999999988
Q ss_pred ceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc--c--CceecC
Q 010532 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTG 500 (508)
Q Consensus 425 ~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~--~--gw~~TG 500 (508)
.......... ..+++|+|++|++++|+|.+++..++ .|+.|||+|+|++++.||+|+++.+.+.|. + +||+||
T Consensus 345 ~~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG 421 (546)
T PRK08314 345 QTHSNPPDRP-KLQCLGIPTFGVDARVIDPETLEELP--PGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421 (546)
T ss_pred ceecCCCcCC-CCCccCcccCCeEEEEEeCCCCcCCC--CCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence 7665544332 34789999999999999933455454 448999999999999999999999988882 3 499999
Q ss_pred cccccc
Q 010532 501 CPHLFL 506 (508)
Q Consensus 501 D~g~~~ 506 (508)
|+|++.
T Consensus 422 Dl~~~~ 427 (546)
T PRK08314 422 DLGRMD 427 (546)
T ss_pred CEEEEc
Confidence 999874
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=415.01 Aligned_cols=369 Identities=24% Similarity=0.334 Sum_probs=306.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+.++.+.|++++.++||++|+.+. + +.+||.||.++++++|+.|.+.|+.+||+|+++++|+.++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++.+++++++++........... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999876544332210 0113
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++...............++++++++|||||||.||+|.++|.++...+..... ..++..+|++++.+|++|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSAL-----NLGLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHH-----hcCCCcCcEEEEecCHHHHHH
Confidence 343333212222223346789999999999999999999999998877665333 237789999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcC
Q 010532 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (508)
+...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+.....
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------- 250 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------- 250 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence 8888888999999999887 9999999999999999999999999886421110
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCC-CcccCCcc
Q 010532 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN-EMSMIGTV 440 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~s~ 440 (508)
....++|.+++||+++++.+.+.+++ +++++++.||+||++..+...... ....++++
T Consensus 251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v 309 (483)
T PRK03640 251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKE-KGIPVYQSYGMTETASQIVTLSPEDALTKLGSA 309 (483)
T ss_pred --------------------ccCCcceEEEEcCCCCCHHHHHHHHH-hCCCeeeeeccCcccccccccCcccccccCCCc
Confidence 00137999999999999999998887 499999999999987654433332 33445899
Q ss_pred cccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+|+++++++|.+ + +. +++.|+.|||+|+||+++.||+++++.+...|.+|||+|||+|++.
T Consensus 310 G~p~~~~~~~i~~-~-~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~ 371 (483)
T PRK03640 310 GKPLFPCELKIEK-D-GV--VVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLD 371 (483)
T ss_pred ccccCCcEEEEec-C-CC--cCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEc
Confidence 9999999999988 4 33 4456689999999999999999999999999999999999999874
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=428.75 Aligned_cols=406 Identities=14% Similarity=0.156 Sum_probs=308.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
|...++|+++++.+||++|+++. +...+..+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||
T Consensus 53 n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 129 (629)
T PRK10524 53 NLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129 (629)
T ss_pred eHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 44578898888899999999875 333334478999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC---------HHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK---------IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
+++|++++|+++.++.+++..+++.++++++|+++.. .+.+.+...........++.++...... ..
T Consensus 130 ~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~ 205 (629)
T PRK10524 130 ARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----AR 205 (629)
T ss_pred HHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cc
Confidence 9999999999999999999999999999999997642 1222222221113345566554321100 00
Q ss_pred cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
.......++++.........+.....++++++++|||||||.||||+++|.+++........ ...++.++|++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~ 281 (629)
T PRK10524 206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMD----TIFGGKAGETFFCA 281 (629)
T ss_pred ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHH----HhcCCCCCCEEEEc
Confidence 01112346665543322222222346789999999999999999999999997654433211 12367788999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHH
Q 010532 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (508)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (508)
.|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.-..
T Consensus 282 ~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------- 347 (629)
T PRK10524 282 SDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA-------------- 347 (629)
T ss_pred CCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc--------------
Confidence 99999887654 6777999999999763 688999999999999999999999887542000
Q ss_pred HHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceec
Q 010532 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 428 (508)
.....++ +++|.+++||+++++++.+++++.+++++++.||+||++..+..
T Consensus 348 ---------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 398 (629)
T PRK10524 348 ---------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILA 398 (629)
T ss_pred ---------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhc
Confidence 0001111 37999999999999999999999999999999999999854333
Q ss_pred cCCC---CcccCCcccccccCeeEEEeecC-CCcccCCCCCCCceEEEecC---cccccccCChhhhhhhc----ccCce
Q 010532 429 SLPN---EMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVM----VDGWF 497 (508)
Q Consensus 429 ~~~~---~~~~~~s~G~p~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~~~~~f----~~gw~ 497 (508)
.... .....+++|+|++|++++|+| + ++.+++ .|+.|||+|+|| +++.|||++++.+.+.+ .+|||
T Consensus 399 ~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~~~--~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (629)
T PRK10524 399 IARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEPCG--PNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVY 475 (629)
T ss_pred CCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCCCC--CCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEE
Confidence 2221 122358999999999999999 6 666554 558999999998 57899999998776654 36899
Q ss_pred ecCcccccc
Q 010532 498 HTGCPHLFL 506 (508)
Q Consensus 498 ~TGD~g~~~ 506 (508)
+|||+|+++
T Consensus 476 ~TGDl~~~d 484 (629)
T PRK10524 476 STFDWGIRD 484 (629)
T ss_pred EcCCcEEEc
Confidence 999999874
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=416.56 Aligned_cols=398 Identities=20% Similarity=0.267 Sum_probs=316.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.+++.++|++.++++||++|+++. +. .+..+++||.||.++++++|+.|.++|+++||+|+++++|+.++++++||
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999875 42 23347899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++.++++.+|++.+..+.+.+........++.++..+..... .....++
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 153 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF 153 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence 99999999999999999999999999999999999987766655544333455566655442110 0123445
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++...............++++++++|||||||.||+|.++|.++...... ......+..++++++.+|++|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~ 228 (517)
T PRK08008 154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY-----SAWQCALRDDDVYLTVMPAFHIDC 228 (517)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHH-----HhhhcCCCCCCeEEEecCcHHHHH
Confidence 554443322112223346689999999999999999999999999865432 122224678899999999999876
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
... ++.++..|+++++.+. ++..+++.++++++|.+.++|.+++.+.......
T Consensus 229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 283 (517)
T PRK08008 229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA------------------------- 283 (517)
T ss_pred HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-------------------------
Confidence 665 6667999999999876 8999999999999999999999998875411000
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~ 440 (508)
... ..+++.+.++ .+++++..+.+.+.+++++++.||+||+++.+...........+++
T Consensus 284 ------------~~~--------~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 342 (517)
T PRK08008 284 ------------NDR--------QHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI 342 (517)
T ss_pred ------------ccc--------cccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence 000 0256766665 4788999888988899999999999999876665544444445789
Q ss_pred cccccCeeEEEeecCCCcccCCCCCCCceEEEec---CcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG---STVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g---~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
|.|+++++++|+| +++.+++. |+.|||+++| ++++.|||++++.+.+.| .+|||+|||+|++.
T Consensus 343 G~~~~g~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~ 409 (517)
T PRK08008 343 GRPGFCYEAEIRD-DHNRPLPA--GEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVD 409 (517)
T ss_pred ccCCCCcEEEEEC-CCCCCCCC--CCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEEC
Confidence 9999999999999 77765554 5899999998 689999999999999999 68999999999874
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=420.91 Aligned_cols=403 Identities=25% Similarity=0.389 Sum_probs=317.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.++++++++++||++|+.+. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~----~-----~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 101 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFF----G-----ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence 458999999999999999999864 2 3699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhh---H----------
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQ---R---------- 189 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~---~---------- 189 (508)
|+++|++++|+++.++.+++.+++++++++++|+++.....+...... ..++.++..+...... .
T Consensus 102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence 999999999999999999999999999999999988766554433221 2233444332110000 0
Q ss_pred ----HHHhhcCcEEeeHHHHHHcccCC---CCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcc
Q 010532 190 ----EEIEKYGLAVYSWDEFLQLGENK---QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262 (508)
Q Consensus 190 ----~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~ 262 (508)
............|+++....... .........+++++++|||||||.||+|.++|+++...+......+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---- 255 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV---- 255 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc----
Confidence 00000122345677665542211 0122335678999999999999999999999999987765432221
Q ss_pred cC-CCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhcc
Q 010532 263 EK-LTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (508)
Q Consensus 263 ~~-~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (508)
.+ ...++++++.+|++|.+|+.. ...++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+......
T Consensus 256 ~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--- 332 (573)
T PRK05605 256 PGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG--- 332 (573)
T ss_pred cccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC---
Confidence 11 234689999999999999876 5556899999998876 99999999999999999999999999875321110
Q ss_pred ChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCc
Q 010532 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~ 419 (508)
..+ +++|.+++||+++++++.+.+++.++..+++.||+
T Consensus 333 ----------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~ 370 (573)
T PRK05605 333 ----------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGL 370 (573)
T ss_pred ----------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeeccccc
Confidence 001 37999999999999999999999889999999999
Q ss_pred ccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceec
Q 010532 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHT 499 (508)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~T 499 (508)
||+++++..........++++|+|+++++++|+| +++...+++.|+.|||+|+|+.++.||+++++.+.+.|.+|||+|
T Consensus 371 TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T 449 (573)
T PRK05605 371 TETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRT 449 (573)
T ss_pred chhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCccc
Confidence 9999877665544434458999999999999999 655334445668999999999999999999999999998899999
Q ss_pred Ccccccc
Q 010532 500 GCPHLFL 506 (508)
Q Consensus 500 GD~g~~~ 506 (508)
||+|++.
T Consensus 450 GD~~~~~ 456 (573)
T PRK05605 450 GDVVVME 456 (573)
T ss_pred CCEEEEc
Confidence 9999874
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=418.04 Aligned_cols=411 Identities=17% Similarity=0.232 Sum_probs=322.7
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhH
Q 010532 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 38 ~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~ 116 (508)
...+...|+.++|++++..+||++|+++. +. ..+++||.||.+++.++|+.|.+ .|+++||+|+++++|++++
T Consensus 4 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~ 77 (576)
T PRK05620 4 TMQDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEH 77 (576)
T ss_pred hhhcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHH
Confidence 34455679999999999999999999864 22 13789999999999999999986 7999999999999999999
Q ss_pred HHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 117 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
+++++||+++|++++|+++..+.+++.++++.++++++|++......+.+..... ...+.++..+..............
T Consensus 78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 156 (576)
T PRK05620 78 LEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKEC-PCVRAVVFIGPSDADSAAAHMPEG 156 (576)
T ss_pred HHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhC-ccccEEEEecCcccccchhccccc
Confidence 9999999999999999999999999999999999999999987766655544332 455666665432211111111112
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecC
Q 010532 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 276 (508)
....+|+++...... ........++++++++|||||||.||+|.++|+++......+.. .....+..++++++.+|
T Consensus 157 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~p 232 (576)
T PRK05620 157 IKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT---TDSLAVTHGESFLCCVP 232 (576)
T ss_pred cccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhh---hhhcCCCCCCeEEEeCC
Confidence 345568888764322 22233456789999999999999999999999998655433211 11235778899999999
Q ss_pred hHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010532 277 LAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 277 ~~~~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
++|.+++...+.++..|+++++.+. ++..+++.|+++++++++++|+++..+.........
T Consensus 233 l~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 295 (576)
T PRK05620 233 IYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP----------------- 295 (576)
T ss_pred hHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc-----------------
Confidence 9999998877788999999988753 899999999999999999999999887653211000
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCc
Q 010532 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (508)
...++|.+++||+++++.+.+.+++.+|+++++.||+||++..+....+...
T Consensus 296 ----------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 347 (576)
T PRK05620 296 ----------------------------ERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSG 347 (576)
T ss_pred ----------------------------ccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCc
Confidence 0026999999999999999999999899999999999999887655433210
Q ss_pred -------ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhh----------------hhh
Q 010532 435 -------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT----------------KEV 491 (508)
Q Consensus 435 -------~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~----------------~~~ 491 (508)
....++|++.++++++|++ + +..++...++.|||+++|++++.|||++++.+ .+.
T Consensus 348 ~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~ 425 (576)
T PRK05620 348 VSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDR 425 (576)
T ss_pred cccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcc
Confidence 1124789999999999998 5 66665555678999999999999999999887 333
Q ss_pred c-ccCceecCcccccc
Q 010532 492 M-VDGWFHTGCPHLFL 506 (508)
Q Consensus 492 f-~~gw~~TGD~g~~~ 506 (508)
| .+|||+|||+|++.
T Consensus 426 ~~~~g~~~TGD~~~~~ 441 (576)
T PRK05620 426 FTADGWLRTGDVGSVT 441 (576)
T ss_pred cccCCcEecCceEEEc
Confidence 4 57999999999874
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=414.85 Aligned_cols=391 Identities=20% Similarity=0.216 Sum_probs=313.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
+...+++.++|+++++++||++|+++. + +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++
T Consensus 17 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~ 87 (542)
T PRK06155 17 PPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDV 87 (542)
T ss_pred CccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHH
Confidence 346788999999999999999999864 2 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|+++.++.+++..+++.+++++++++.+....+.+..... ..++.++.++..... .... .
T Consensus 88 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~---~ 159 (542)
T PRK06155 88 FLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASV----SVPA---G 159 (542)
T ss_pred HHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cCcceEEEecCcccc----cccc---c
Confidence 9999999999999999999999999999999999999988776665443222 344556655543210 0000 0
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
....++.. ...........++++++++|||||||.||+|.++|+++..........+ .+...+++++.+|++|
T Consensus 160 ~~~~~~~~--~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~ 232 (542)
T PRK06155 160 WSTAPLPP--LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFH 232 (542)
T ss_pred cchhhhcc--cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHH
Confidence 00111111 0111112234678999999999999999999999999988776644333 6788999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
..++...+.+++.|+++++.+. ++..+++.|+++++|.++++|+++..+.+.....
T Consensus 233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----------------------- 289 (542)
T PRK06155 233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARE----------------------- 289 (542)
T ss_pred HHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc-----------------------
Confidence 9998878888999999998876 8999999999999999999999998876521100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCC
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (508)
. ...+++|.++.|| +++.+.+.+++.+++++++.||+||++.++..... ...++
T Consensus 290 --------------~--------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~ 343 (542)
T PRK06155 290 --------------S--------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRPG 343 (542)
T ss_pred --------------c--------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCCC
Confidence 0 0013788877666 56888899998899999999999999887665432 23347
Q ss_pred cccccccCeeEEEeecCCCcccCCCCCCCceEEEecC---cccccccCChhhhhhhcccCceecCcccccc
Q 010532 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 439 s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
++|.|+++++++|+| +++.+++.+ +.|||+|+|+ +++.||+++++.+.+.|.+|||+|||+|++.
T Consensus 344 ~vG~~~~~~~~~i~d-~~~~~~~~g--~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~ 411 (542)
T PRK06155 344 SMGRLAPGFEARVVD-EHDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRD 411 (542)
T ss_pred CcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEc
Confidence 899999999999999 777666554 8999999998 6999999999999999999999999999984
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=416.70 Aligned_cols=399 Identities=19% Similarity=0.220 Sum_probs=305.3
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010532 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
..+.-.++.++|+++++++||++|+++. ++. +++||+||.++++++|+.|.+.|+++||+|+|+++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 83 (534)
T PRK05852 11 ASDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV 83 (534)
T ss_pred hhhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence 4466788999999999999999999865 332 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
++|||+++|++++|+++.++.+++.++++.++++++|++............ ......+.+...... . ....
T Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~-~~~~ 154 (534)
T PRK05852 84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGP-----S-GGTL 154 (534)
T ss_pred HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccc-----c-cccc
Confidence 999999999999999999999999999999999999998753322111100 011111111111000 0 0000
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.... ........+....++.++++|||||||.||+|.++|+++...+..+...+ .+..+|++++.+|++
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 227 (534)
T PRK05852 155 SVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLY 227 (534)
T ss_pred cccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcc
Confidence 00010000 00000111122356789999999999999999999999998888755444 678899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010532 279 HIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
|.+++.. ++.+++.|+++++.+ +++..+++.|+++++|.++++|.++..+.+......
T Consensus 228 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------ 289 (534)
T PRK05852 228 HGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP------------------ 289 (534)
T ss_pred hhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc------------------
Confidence 9999876 566689999988864 378999999999999999999999998875321100
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-
Q 010532 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE- 433 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~- 433 (508)
.....+++|.++++|+++++.+.+.+++.++.++++.||+||++..++......
T Consensus 290 -------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~ 344 (534)
T PRK05852 290 -------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGI 344 (534)
T ss_pred -------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccc
Confidence 000114899999999999999999999999999999999999987666443211
Q ss_pred ---cccCCccccc--ccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 434 ---MSMIGTVGPP--VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ---~~~~~s~G~p--~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.....+.|.+ .+|++++|+| +++..++ .|+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|+++
T Consensus 345 ~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~--~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d 419 (534)
T PRK05852 345 GQTENPVVSTGLVGRSTGAQIRIVG-SDGLPLP--AGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLS 419 (534)
T ss_pred ccccCcccccccCCCCCCCeEEEEC-CCCCCCC--CCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEe
Confidence 1111234444 7999999999 7776655 4589999999999999999999999999999999999999874
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=412.00 Aligned_cols=377 Identities=24% Similarity=0.265 Sum_probs=306.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..+.+.|++.|+.+||++|+++. . +.+||.||.++++++|+.|++ .|+.+||+|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46889999999999999999853 2 579999999999999999985 7999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++.+++++++++......+...... .....++.+. ++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence 999999999999999999999999999999999987765544333211 1222333322 12
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++.... ........++++++++|||||||.||+|.++|.++......... ...+..+|++++.+|++|.+|
T Consensus 133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g 204 (496)
T PRK06839 133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTF-----AIDLTMHDRSIVLLPLFHIGG 204 (496)
T ss_pred HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHH-----HcCCCCCCeEEEeeCCcchhh
Confidence 2222221 11222345688999999999999999999999998766554322 235778899999999999998
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+.+.....
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 259 (496)
T PRK06839 205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE------------------------- 259 (496)
T ss_pred HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence 876 4567999999988766 9999999999999999999999999986521100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-cccCCc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGT 439 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~s 439 (508)
. ...+++|.+++||+++++++.+.+++. |+++++.||+||++..+....... ....++
T Consensus 260 ------------~--------~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 318 (496)
T PRK06839 260 ------------T--------TNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS 318 (496)
T ss_pred ------------c--------CCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence 0 011479999999999999999999886 899999999999987654443322 234589
Q ss_pred ccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 440 ~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+|+|+++++++|+| +++..++ .|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|++.
T Consensus 319 ~G~p~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~ 382 (496)
T PRK06839 319 IGKPVLFCDYELID-ENKNKVE--VGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382 (496)
T ss_pred CcccCCCceEEEEC-CCcCCCC--CCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEc
Confidence 99999999999999 7777644 5589999999999999999999999988899999999999974
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=415.33 Aligned_cols=392 Identities=21% Similarity=0.256 Sum_probs=313.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
...+|+.+++.+.++++||++|+.+. + +.+||.||.+++.++|+.|.+.|+++||+|+|+++|++++++++
T Consensus 4 ~~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~ 74 (528)
T PRK07470 4 RRVMNLAHFLRQAARRFPDRIALVWG----D-----RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESM 74 (528)
T ss_pred ccCCCHHHHHHHHHHHCCCceEEEEC----C-----ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 44578999999999999999999764 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
+||+++|++++|+++.++.+++..+++.++++.++++.............. .....++.+..... ..
T Consensus 75 lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~ 141 (528)
T PRK07470 75 FAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAAS-PDLTHVVAIGGARA------------GL 141 (528)
T ss_pred HHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhC-CcCceEEEeCCCcc------------cc
Confidence 999999999999999999999999999999999999987654443322211 34445555543211 23
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
.++++...............++++++++|||||||.||+|.++|+++...+......+ .......|+++..+|++|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~ 218 (528)
T PRK07470 142 DYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHG 218 (528)
T ss_pred cHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhH
Confidence 5666655432222233345678999999999999999999999999976554422211 1245678899999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
+++..+ ..++.|++.++.+. ++..+++.|+++++|.+.++|++++.+.+...
T Consensus 219 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 273 (528)
T PRK07470 219 AGIHQL-CQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA------------------------ 273 (528)
T ss_pred HHHHHH-HHHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC------------------------
Confidence 888654 35677777776642 89999999999999999999999998764210
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCC-----
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN----- 432 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~----- 432 (508)
.+.. ..+++|.+++||+++++...+.+.+.+|..+++.||+||+++.+......
T Consensus 274 -------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 332 (528)
T PRK07470 274 -------------VDRY--------DHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAE 332 (528)
T ss_pred -------------cCCC--------CCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccc
Confidence 0000 11489999999999999999999888899999999999998876654321
Q ss_pred --CcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 433 --EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 433 --~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.....+++|+|+++++++|+| +++.+++ .|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++.
T Consensus 333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~--~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~ 405 (528)
T PRK07470 333 DGPDARIGTCGFERTGMEVQIQD-DEGRELP--PGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLD 405 (528)
T ss_pred ccccceeeccCcccCCcEEEEEC-CCCCCCC--CCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEc
Confidence 112347899999999999999 7776554 4589999999999999999999999998999999999999875
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=425.14 Aligned_cols=393 Identities=16% Similarity=0.138 Sum_probs=299.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccC---CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDG---KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~---~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~ 116 (508)
.....|+.++|+++++++||++|+++. +. ..+..+.+||+||.++++++|+.|.+. +++||+|+|+++|++++
T Consensus 17 ~~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~ 92 (631)
T PRK07769 17 FPPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDY 92 (631)
T ss_pred ccccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHH
Confidence 345579999999999999999999875 31 123346899999999999999999987 89999999999999999
Q ss_pred HHHHHHHHhhCCeeeec-cCCCC--hHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCC-CCccEEEEeCCCChhhHHHH
Q 010532 117 IIGMEACNALGLHCVPL-YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 117 ~~~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~l~~vi~~~~~~~~~~~~~ 192 (508)
++++|||+++|++++|+ ++..+ .+++.++++.++++++|++.+....+.+...... .....++..+....
T Consensus 93 ~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 166 (631)
T PRK07769 93 LIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD------ 166 (631)
T ss_pred HHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc------
Confidence 99999999999999999 45554 6789999999999999998876554433221110 11123333221110
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
.. ..........++++++|+|||||||.||||++||+++...+..+...+ ++..+++++
T Consensus 167 ---------------~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l 225 (631)
T PRK07769 167 ---------------EV-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGV 225 (631)
T ss_pred ---------------cc-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEE
Confidence 00 001111234678999999999999999999999999998877654433 677889999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEec---C--CHHHHHHHhhhcCC---eEEEeCcHHHHHHHHHHHHhhhccChhHH
Q 010532 273 SYLPLAHIFDRAIEEVFISNGAAIGFWR---G--DVKLLLEDIGELKP---TIFCAVPRVLDRIYSGLNQKISSGGLLKK 344 (508)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~vv~~~---~--~~~~~~~~i~~~~~---t~l~~~P~~l~~l~~~~~~~~~~~~~~~~ 344 (508)
..+|++|.+|+...+.+++.|+++++.+ + ++..+++.++++++ +.+.++|.++..+.+..... .
T Consensus 226 ~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~--~------ 297 (631)
T PRK07769 226 SWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLP--K------ 297 (631)
T ss_pred EeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccc--h------
Confidence 9999999999987777778899998874 2 78899999999886 78899999887664310000 0
Q ss_pred HHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh---C---CceEeccC
Q 010532 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA---C---AHVLQGYG 418 (508)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~---~~v~~~yG 418 (508)
......++ +++|.+++||+++++++.+.|.+.| | ..+++.||
T Consensus 298 ------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG 345 (631)
T PRK07769 298 ------------------------DGEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYG 345 (631)
T ss_pred ------------------------hcccCcch--------hheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccc
Confidence 00000112 3899999999999999999999887 3 35999999
Q ss_pred cccCCcceeccCCCCc--------------------------ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEE
Q 010532 419 LTETCAGTFVSLPNEM--------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCV 472 (508)
Q Consensus 419 ~tE~~~~~~~~~~~~~--------------------------~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v 472 (508)
+||++++++....... ...+++|+|+++++++|+|.+++.+++ .|+.|||+|
T Consensus 346 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~--~ge~GEl~v 423 (631)
T PRK07769 346 MAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELP--DGQIGEIWL 423 (631)
T ss_pred hhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCC--CCCEEEEEe
Confidence 9999876654432110 012479999999999999833455444 458999999
Q ss_pred ecCcccccccCChhhhhhhcc------------------cCceecCccccc
Q 010532 473 KGSTVFSGYYKREDLTKEVMV------------------DGWFHTGCPHLF 505 (508)
Q Consensus 473 ~g~~v~~gY~~~~~~~~~~f~------------------~gw~~TGD~g~~ 505 (508)
+||+++.||||+++.|.+.|. +|||+|||+|++
T Consensus 424 ~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~ 474 (631)
T PRK07769 424 HGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY 474 (631)
T ss_pred cCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE
Confidence 999999999999999999883 389999999986
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=413.11 Aligned_cols=389 Identities=15% Similarity=0.169 Sum_probs=308.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.++++++++++|+++|+++. . +.+||.||.++++++|..|.+.|+++||+|+++++|++++++++||
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 92 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA 92 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 467999999999999999999754 2 4799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH----HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
|+++|++++++++..+.+++.++++.+++++++++.... ..+.+......+.++.++.......
T Consensus 93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 160 (527)
T TIGR02275 93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------ 160 (527)
T ss_pred HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence 999999999999999999999999999999999987542 1111111112244455555432210
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
.......+.... .....+...++++++++|||||||.||+|.++|.++...+......+ .+..+|+++..+|++
T Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~ 234 (527)
T TIGR02275 161 EAELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA 234 (527)
T ss_pred cchhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence 001111111111 11222345678999999999999999999999999998887754433 677889999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. .+.++..|+++++.+. ++..+++.+++++++++.++|.++..+.+......
T Consensus 235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------- 295 (527)
T TIGR02275 235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR------------------- 295 (527)
T ss_pred hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC-------------------
Confidence 9998864 5667899999988765 89999999999999999999999988765321110
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
...+++|.+++||+++++++.+.+++.+|.++++.||+||++............
T Consensus 296 --------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 349 (527)
T TIGR02275 296 --------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI 349 (527)
T ss_pred --------------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence 011379999999999999999999999999999999999965433222111122
Q ss_pred cCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+ ++++++|+| ++++..+ .|+.|||+|+|+.++.||+++++.+...| .||||+|||+|++.
T Consensus 350 ~~~~~G~~~~~~~~v~i~d-~~g~~~~--~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~ 419 (527)
T TIGR02275 350 IFTTQGRPMSPDDEVRVVD-DHGNPVA--PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLT 419 (527)
T ss_pred ccccCCCCCCCCceEEEEC-CCCCCCC--CCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEc
Confidence 346899999 588999999 7776554 45899999999999999999999999888 78999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-49 Score=413.90 Aligned_cols=390 Identities=19% Similarity=0.247 Sum_probs=312.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.++.++|++.++++||++|+++. ++ +.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999999764 33 47999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC-----HHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK-----IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
+++|++++|+++.++.+++..+++.++++++++++.. .+.+...... ...++.++..+..... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~ 164 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQ-LPQLQQIVGVDKLAPA---------TS 164 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhh-CCCCcEEEEeCCcCCC---------cC
Confidence 9999999999999999999999999999999998642 2222222222 2445566665543211 11
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.+++...... ........+++++|+|||||||.||+|.++|.++......+... ..+..++++++.+|++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~d~~l~~~pl~ 238 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCAR-----LNLTWQDVFMMPAPLG 238 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHh-----cCCCCCCeEEEecchH
Confidence 22455554432211 12223467899999999999999999999999998877664433 3678899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
|.+++.. ++.++..|+++++.+. ++..+++.++++++++++++|.++..+++......
T Consensus 239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~-------------------- 298 (547)
T PRK06087 239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP-------------------- 298 (547)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--------------------
Confidence 9999875 6667899999999876 99999999999999999998887776654211100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-cc
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MS 435 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~ 435 (508)
...+++|.+++||+++++++.+.+.+. ++++++.||+||++++........ ..
T Consensus 299 -------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~ 352 (547)
T PRK06087 299 -------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR 352 (547)
T ss_pred -------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence 011479999999999999999888774 999999999999987765543322 12
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|++++.++|+| +++.+++ .|+.|||+++|++++.||+++++.+...| .+|||+|||+|++.
T Consensus 353 ~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~ 421 (547)
T PRK06087 353 FMHTDGYAAAGVEIKVVD-EARKTLP--PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMD 421 (547)
T ss_pred cCCcCCccCCCceEEEEc-CCCCCCc--CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEEC
Confidence 236789999999999999 7776554 45899999999999999999999998888 68999999999874
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=409.71 Aligned_cols=370 Identities=18% Similarity=0.208 Sum_probs=301.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
+++.+.|+++++++||++|+++. + .++||.||.++++++|+.|.+.|. +||+|+|+++|++++++++|||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999999764 2 479999999999999999999885 8999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHH
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 203 (508)
+++|++++|+++.++.+++.++++.++++++|++......+... . ..++..+. +.
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~ 125 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK 125 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence 99999999999999999999999999999999998655443221 1 12222211 11
Q ss_pred HHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHH
Q 010532 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (508)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 283 (508)
+...... ..........+++++++|||||||.||+|.++|+++...+...... ..+..+|+++...|++|..++
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~l~~~~~l 199 (487)
T PRK07638 126 RMIEKYL-PTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHD-----FHMKREDSVLIAGTLVHSLFL 199 (487)
T ss_pred hhhhhcc-ccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHh-----cCcCCCCEEEEeecchHHHHH
Confidence 1111110 0111112234678999999999999999999999998888764433 367889999999999998877
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCC
Q 010532 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (508)
Q Consensus 284 ~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (508)
...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+...
T Consensus 200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 250 (487)
T PRK07638 200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----------------------------- 250 (487)
T ss_pred HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence 667778999999999876 89999999999999999999999998865200
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCcccCCccc
Q 010532 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G 441 (508)
...+.+.++++|+++++++.+.+++.+ ++.+++.||+||++.++...........+++|
T Consensus 251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G 310 (487)
T PRK07638 251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG 310 (487)
T ss_pred --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence 002455678899999999999999988 68999999999999877665543334457999
Q ss_pred ccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 442 ~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+|+++++++|+| +++.+++ .|+.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++.
T Consensus 311 ~~~~~~~~~i~d-~~g~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d 372 (487)
T PRK07638 311 RPFHNVQVRICN-EAGEEVQ--KGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYED 372 (487)
T ss_pred cccCCcEEEEEC-CCCCCCC--CCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEc
Confidence 999999999999 7776554 4589999999999999999999988877789999999999874
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=412.55 Aligned_cols=403 Identities=18% Similarity=0.243 Sum_probs=316.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.+-..++.++|+.+++++|+++++.+. . .+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~ 80 (539)
T PRK07008 6 MDMPLLISSLIAHAARHAGDTEIVSRR---V--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEA 80 (539)
T ss_pred ccCCCCHHHHHHHHHhhCCCceEEEee---c--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 334468999999999999998888653 1 12236799999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
++||+++|++++|+++.++.+++..+++.+++++++++....+.+.+..... ..++.++...+..... ......
T Consensus 81 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~ 154 (539)
T PRK07008 81 YYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC-PNVKGWVAMTDAAHLP-----AGSTPL 154 (539)
T ss_pred HHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhC-CCceEEEEEccCCccc-----cCCccc
Confidence 9999999999999999999999999999999999999987766554443322 4555665554332100 011235
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
.+++++...... ........++++++++|||||||.||+|++||+++........ .....++..+|+++...|++|
T Consensus 155 ~~~~~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~---~~~~~~~~~~d~~l~~~p~~h 230 (539)
T PRK07008 155 LCYETLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAA---LPDAMGLSARDAVLPVVPMFH 230 (539)
T ss_pred ccHHHHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhh---cccccCCCCCceEEecCchHH
Confidence 667776543322 1122345678899999999999999999999999865432211 112336778899999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
..++...+.++..|+++++.+. +++.+++.++++++|.+.++|+++..+.+......
T Consensus 231 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------- 289 (539)
T PRK07008 231 VNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG--------------------- 289 (539)
T ss_pred hhhHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC---------------------
Confidence 8887766777899999998753 89999999999999999999999998765321110
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC----
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE---- 433 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (508)
. ..+++|.++++|+++++++.+.+++.+++.+++.||+||++..++.+....
T Consensus 290 ----------------~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~ 345 (539)
T PRK07008 290 ----------------L--------RFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQ 345 (539)
T ss_pred ----------------C--------CcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceeccccccccc
Confidence 0 114799999999999999999999989999999999999987655443211
Q ss_pred ------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 434 ------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.....++|+|+|+++++|+| +++..++.+.++.|||+++|+.++.||+++++ ..+.+|||+|||+|+++
T Consensus 346 ~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~ 420 (539)
T PRK07008 346 LPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATID 420 (539)
T ss_pred CCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEc
Confidence 11236799999999999999 88877776555689999999999999999983 34568999999999874
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=413.87 Aligned_cols=391 Identities=22% Similarity=0.259 Sum_probs=320.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
..-+|+.+.+.+++.++||++|+.+. + +.+||.||.++++++|+.|.+.|+++||+|+|+++|++++++++
T Consensus 14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34589999999999999999999864 3 36999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
+||+++|++++|+++..+.+++..+++.+++++++++......+..... ..+.++.++..++... ....
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~ 153 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRD-IVPLLSTVVVAGGSSD----------DSVL 153 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhh-ccCccceEEEecCCCc----------cccc
Confidence 9999999999999999999999999999999999999876655433322 2255666666543211 1234
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC-CCCcEEEEecChHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL-TSEDVYVSYLPLAH 279 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~ 279 (508)
+++++....... ........+++++++|||||||.||+|.++|+++...+......+ ++ ..++++++.+|++|
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 154 GYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFH 227 (542)
T ss_pred CHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHH
Confidence 566665543221 122334567899999999999999999999999988877654433 34 56789999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 280 IFDRAIEEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.+|+..++.++..|+++++.+ +++..+++.++++++|.++++|+++..+........
T Consensus 228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-------------------- 287 (542)
T PRK07786 228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP-------------------- 287 (542)
T ss_pred HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------------------
Confidence 999877888899999999875 289999999999999999999999999865211100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC-c
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-M 434 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~ 434 (508)
. ..++|.+++||+++++++.+.+++.+ +..+++.||+||++++........ .
T Consensus 288 -----------------~---------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~ 341 (542)
T PRK07786 288 -----------------R---------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAI 341 (542)
T ss_pred -----------------c---------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccc
Confidence 0 01589999999999999999999988 789999999999987665443322 2
Q ss_pred ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 435 ~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
...+++|+|++++.++|+| +++.+++ .|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++.
T Consensus 342 ~~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~ 410 (542)
T PRK07786 342 RKLGSVGKVIPTVAARVVD-ENMNDVP--VGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQD 410 (542)
T ss_pred ccCCCccccCCCceEEEEC-CCCCCCc--CCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEc
Confidence 3347899999999999999 7776655 4589999999999999999999999999999999999999874
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-49 Score=415.21 Aligned_cols=406 Identities=19% Similarity=0.296 Sum_probs=309.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCchhHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
-+.++.+.|+++++++|+++|+... + +.+||.||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 22 ~~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~ 92 (562)
T PRK12492 22 AYKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 3468999999999999999998753 2 4799999999999999999985 9999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeC--CCCh------------
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS--KVKP------------ 186 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~--~~~~------------ 186 (508)
|||+++|++++|+++..+.+++.++++.++++++++++...+.+...... .....++... +...
T Consensus 93 la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (562)
T PRK12492 93 FGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVD 170 (562)
T ss_pred HHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhcccccc
Confidence 99999999999999999999999999999999999987654443332211 1111111110 0000
Q ss_pred -hhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhccc--
Q 010532 187 -EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE-- 263 (508)
Q Consensus 187 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~-- 263 (508)
...............|+++................+++++|+|||||||.||+|+++|+++...+..+...+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~ 250 (562)
T PRK12492 171 KVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDG 250 (562)
T ss_pred cccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccc
Confidence 00000000001234566665443222222234567899999999999999999999999998877665443311100
Q ss_pred --CCCC-CcEEEEecChHHHHHHHH-HHHHHHcCCEEEEec--CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhh
Q 010532 264 --KLTS-EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (508)
Q Consensus 264 --~~~~-~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (508)
.... .++++..+|++|.+++.. +...+..|..+++.. .++..+++.++++++|++.++|+++..+.+...
T Consensus 251 ~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---- 326 (562)
T PRK12492 251 QPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG---- 326 (562)
T ss_pred cccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC----
Confidence 0122 357889999999999876 444578888776653 388999999999999999999999988764210
Q ss_pred ccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEecc
Q 010532 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGY 417 (508)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~y 417 (508)
....++ +++|.+++||+++++.+.+.+++.+++++++.|
T Consensus 327 ---------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~Y 365 (562)
T PRK12492 327 ---------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGY 365 (562)
T ss_pred ---------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeecc
Confidence 000111 379999999999999999999998999999999
Q ss_pred CcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCc
Q 010532 418 GLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496 (508)
Q Consensus 418 G~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw 496 (508)
|+||++++++..........+++|+|+++++++|+| +++..++ .|+.|||+|+|+.++.|||++++.+.+.| .+||
T Consensus 366 G~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~ 442 (562)
T PRK12492 366 GLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELP--LGERGELCIKGPQVMKGYWQQPEATAEALDAEGW 442 (562)
T ss_pred CccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCC--CCCceEEEEeCCccccccccCchhhhhcccCCCc
Confidence 999998877665544333457899999999999999 7776554 45899999999999999999999999998 6899
Q ss_pred eecCcccccc
Q 010532 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|++.
T Consensus 443 ~~TGD~g~~~ 452 (562)
T PRK12492 443 FKTGDIAVID 452 (562)
T ss_pred eecCcEEEEC
Confidence 9999999875
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=428.33 Aligned_cols=366 Identities=15% Similarity=0.186 Sum_probs=293.9
Q ss_pred CCHHHHHHHHHHh--CCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 44 ESCWDVFRMAVER--NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 44 ~tl~~~l~~~a~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
.|+.++|.+++.. +||++|+++. ..+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4789999998876 7999999743 259999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|++|.++.+++..+++.++++++|++......+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999986543332110 000 0
Q ss_pred HHHHHHccc-CCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 202 WDEFLQLGE-NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 202 ~~~l~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
..++..... ..+.......++++++++|||||||.||||.++|+++...+..+.. ....+...+++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~ 199 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCR----KALRLTPEDTGLCSARMYFA 199 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHH----HhhCCCCcceeEEeccchhh
Confidence 111111100 0111112345688999999999999999999999999887765421 12357788999999999998
Q ss_pred HHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 281 FDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 281 ~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
+++.. ++.++..|+++++.+. ++..+...++++++|+++++|+++.++.+....
T Consensus 200 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------- 256 (705)
T PRK06060 200 YGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------- 256 (705)
T ss_pred cchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc-----------------------
Confidence 88754 6677999999999874 788889999999999999999999887652110
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCccc
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSM 436 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~ 436 (508)
...+++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+........ .
T Consensus 257 ------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-~ 311 (705)
T PRK06060 257 ------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEW-R 311 (705)
T ss_pred ------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCC-C
Confidence 0013799999999999999999999988 4899999999999876554433222 3
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.+++|+|+++++++|+| +++..++ .|+.|||+|+|++++.||||+++.+.. .+|||+|||+|++.
T Consensus 312 ~~~iG~p~~~~~v~i~d-~~g~~~~--~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~ 376 (705)
T PRK06060 312 LGTLGRVLPPYEIRVVA-PDGTTAG--PGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCID 376 (705)
T ss_pred cCcccccCCCcEEEEEC-CCCCCCC--CCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEEC
Confidence 47899999999999999 7776544 458999999999999999999986532 58999999999874
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=410.34 Aligned_cols=394 Identities=22% Similarity=0.280 Sum_probs=318.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.++|...++++||++|+++. + +.+||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~ 79 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999865 3 469999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++..+.+++..+++.+++++++++.+....+.+...... ...+........ .........
T Consensus 80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~ 151 (523)
T PRK08316 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLD 151 (523)
T ss_pred HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhh
Confidence 999999999999999999999999999999999999887766654432221 111111110000 001112344
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010532 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
++++...... .........+++++++|||||||.||+|.++|+++..........+ ++..++++++.+|++|..
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~ 225 (523)
T PRK08316 152 FADWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCA 225 (523)
T ss_pred HHHHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhh
Confidence 5555443322 1123345778999999999999999999999999988877644433 678899999999999999
Q ss_pred HHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhh
Q 010532 282 DRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (508)
Q Consensus 282 g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (508)
++.. +..++..|+++++.+. ++..+++.++++++|++.++|.++..+++....
T Consensus 226 g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 280 (523)
T PRK08316 226 QLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF------------------------- 280 (523)
T ss_pred hHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc-------------------------
Confidence 8876 4455889999999865 999999999999999999999999887652110
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC-cccC
Q 010532 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-MSMI 437 (508)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-~~~~ 437 (508)
...+ .+++|.+++||++++.++.+.+++.+ ++++++.||+||++.++....... ....
T Consensus 281 ------------~~~~--------~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 340 (523)
T PRK08316 281 ------------DTRD--------LSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRP 340 (523)
T ss_pred ------------ccCC--------cccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCcccccccc
Confidence 0011 13799999999999999999999987 789999999999988776654432 2334
Q ss_pred CcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 438 ~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+++|+|+++++++|+| +++..++. |+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++.
T Consensus 341 ~~~G~~~~~~~~~i~~-~~~~~~~~--g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~ 406 (523)
T PRK08316 341 GSAGRPVLNVETRVVD-DDGNDVAP--GEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMD 406 (523)
T ss_pred CCcccCCCCcEEEEEc-CCCCCCCC--CCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEc
Confidence 8899999999999999 77766555 589999999999999999999999999999999999999984
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=415.32 Aligned_cols=395 Identities=20% Similarity=0.274 Sum_probs=297.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.|+.++|.++++++||++|+++. + .++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999764 2 36999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCC-----CCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-----EHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
+++|++++|+++.++.+++.++++.++++++|++.+....+.+...... ..+ .++.++....... ....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~ 158 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNL-PVIFIHEIDFPKR-----PSSE 158 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCc-eEEEecccccccC-----Cccc
Confidence 9999999999999999999999999999999998876655444322110 112 3444432211000 0012
Q ss_pred EeeHHHHHHcccCCCCC----CCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 199 VYSWDEFLQLGENKQFD----LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
..+++++.......... .....++++++|+|||||||.||+|+++|+++....... .....+...+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~-----~~~~~~~~~~~~l~~ 233 (579)
T PLN03102 159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSA-----IIGWEMGTCPVYLWT 233 (579)
T ss_pred ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHH-----HhhcCCCCCCeEEec
Confidence 34566665543221111 112356899999999999999999999999975443331 112245567789999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 275 LPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
+|++|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.......
T Consensus 234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------- 297 (579)
T PLN03102 234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS---------------- 297 (579)
T ss_pred CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccC----------------
Confidence 999999888776777888888887765 888999999999999999999999998753111000
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
...+++.+++||+++++.+.+.++. +|+++++.||+||+++.+..+....
T Consensus 298 -----------------------------~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~ 347 (579)
T PLN03102 298 -----------------------------PRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD 347 (579)
T ss_pred -----------------------------CcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence 0025678999999999999998876 6899999999999986544321100
Q ss_pred -------------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecC
Q 010532 434 -------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500 (508)
Q Consensus 434 -------------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TG 500 (508)
....+..+.++++++ +.+.+.+..++.+.++.|||+|+|++++.|||++|+.+.+.|.+|||+||
T Consensus 348 ~~~~~~~~~~~~~~~~~g~~~~~~~~v~--i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG 425 (579)
T PLN03102 348 EWNRLPENQQMELKARQGVSILGLADVD--VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG 425 (579)
T ss_pred ccccCCcccccccccCCCcccccccceE--EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence 011234444555544 44523444555544478999999999999999999999999999999999
Q ss_pred cccccc
Q 010532 501 CPHLFL 506 (508)
Q Consensus 501 D~g~~~ 506 (508)
|+|++.
T Consensus 426 Dlg~~d 431 (579)
T PLN03102 426 DVGVIH 431 (579)
T ss_pred ceEEEc
Confidence 999874
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=371.75 Aligned_cols=389 Identities=16% Similarity=0.206 Sum_probs=327.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.++|.++|..+|+++||++|+++. + +.+||+||.++++++|+.|+++|+++||+|++-+||..++++.+||
T Consensus 27 d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA 97 (542)
T COG1021 27 DRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA 97 (542)
T ss_pred CCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence 579999999999999999999864 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC----HHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK----IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~----~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
++++|+++|.--|+....||..+.+.+.|+.+|.+... ...+.+..-...+.++.+++.++...
T Consensus 98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~------------ 165 (542)
T COG1021 98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEH------------ 165 (542)
T ss_pred HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCC------------
Confidence 99999999999999999999999999999999998753 23343333333388899998865532
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
....+..+........+.++.++++++|++.+.||||.||.+..+|....-+++.-.+.+ .+++..++++.+|..
T Consensus 166 ~~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~A 240 (542)
T COG1021 166 PSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAA 240 (542)
T ss_pred cchhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEecccc
Confidence 223444444444444455677889999999999999999999999999888888744444 889999999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+.+.. .+..++.|+++|+.+. +++..+.+|+++++|+.-.+|.+...+++..+.
T Consensus 241 HNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~--------------------- 299 (542)
T COG1021 241 HNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--------------------- 299 (542)
T ss_pred cCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc---------------------
Confidence 9998875 6677999999999887 999999999999999999999988887653221
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
+. ..++|||.+-.||+.+++++.+++...+||.+-+.|||.|- .+++...++..+
T Consensus 300 ----------------~~--------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEG-LvnyTRLDDp~E 354 (542)
T COG1021 300 ----------------ER--------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEG-LVNYTRLDDPPE 354 (542)
T ss_pred ----------------cc--------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhh-hhcccccCCchH
Confidence 12 22359999999999999999999999999999999999994 444444444332
Q ss_pred c-CCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 M-IGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~-~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
. .-+-|+|+ |+-+++|+| .+|++++. ||.|+|..+||..+.|||+.|+-+.++| .+|||+|||+.++.
T Consensus 355 ~i~~TQGrPlsP~DEvrvvD-~dg~pv~p--GE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~ 425 (542)
T COG1021 355 IIIHTQGRPLSPDDEVRVVD-ADGNPVAP--GEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRD 425 (542)
T ss_pred heeecCCCcCCCcceeEEec-CCCCCCCC--CCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEec
Confidence 2 35789999 888999999 88876555 5999999999999999999999999999 89999999998764
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=409.96 Aligned_cols=396 Identities=24% Similarity=0.349 Sum_probs=313.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....+|.++|.+.++++||++|+.+. +.. +.+||+||.++++++|..|.+.|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 85 (559)
T PRK08315 13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ 85 (559)
T ss_pred hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 44468999999999999999999875 433 57999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH-----HHhhcCCC------------CCCCccEEEEeCC
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP-----EMLKTFPK------------TTEHLKTIVSFSK 183 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------~~~~l~~vi~~~~ 183 (508)
|||+++|++++|+++..+.+++..+++.++++++|++..... .+.+.... ..+..+.++..+.
T Consensus 86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (559)
T PRK08315 86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD 165 (559)
T ss_pred HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence 999999999999999999999999999999999999875421 11111110 1123444554433
Q ss_pred CChhhHHHHhhcCcEEeeHHHHHHcccC---C--CCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhh
Q 010532 184 VKPEQREEIEKYGLAVYSWDEFLQLGEN---K--QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258 (508)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~ 258 (508)
.. ......++++...... . ........++++++++|||||||.||+|.++|+++...+..+...+
T Consensus 166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~ 235 (559)
T PRK08315 166 EK----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM 235 (559)
T ss_pred cC----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence 21 1123455555443211 0 1112234568899999999999999999999999988877754433
Q ss_pred hhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHh
Q 010532 259 ESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (508)
Q Consensus 259 ~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 335 (508)
++..+|+++..+|++|.+++.. .+.++..|+++++... ++..+++.++++++|.++++|+++..+......
T Consensus 236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~- 309 (559)
T PRK08315 236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF- 309 (559)
T ss_pred -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-
Confidence 7888999999999999999876 5667999999986543 899999999999999999999999876542110
Q ss_pred hhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceE
Q 010532 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVL 414 (508)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~ 414 (508)
+... .+++|.+++||+++++++.+.+.+.++. .++
T Consensus 310 ------------------------------------~~~~--------~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~ 345 (559)
T PRK08315 310 ------------------------------------ARFD--------LSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT 345 (559)
T ss_pred ------------------------------------CCCC--------chhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence 0001 1378999999999999999999988875 499
Q ss_pred eccCcccCCcceeccCCCC--cccCCcccccccCeeEEEeecCC-CcccCCCCCCCceEEEecCcccccccCChhhhhhh
Q 010532 415 QGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491 (508)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~--~~~~~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~ 491 (508)
+.||+||++.+++...... ...+.++|+|++|++++|+| ++ +..++ .|+.|||+|+|+.++.||+++++.+.+.
T Consensus 346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--~g~~GEl~v~g~~~~~gy~~~~~~~~~~ 422 (559)
T PRK08315 346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGETVP--RGEQGELCTRGYSVMKGYWNDPEKTAEA 422 (559)
T ss_pred EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCcCC--CCCceEEEEECchhhhhhcCChhHHhhc
Confidence 9999999988766554332 22347899999999999999 65 65554 5589999999999999999999999988
Q ss_pred c-ccCceecCcccccc
Q 010532 492 M-VDGWFHTGCPHLFL 506 (508)
Q Consensus 492 f-~~gw~~TGD~g~~~ 506 (508)
| .++||+|||+|+++
T Consensus 423 ~~~~~~~~TGD~~~~~ 438 (559)
T PRK08315 423 IDADGWMHTGDLAVMD 438 (559)
T ss_pred CCCCCCEEccceEEEc
Confidence 8 79999999999874
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=406.55 Aligned_cols=391 Identities=21% Similarity=0.264 Sum_probs=318.8
Q ss_pred CHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHH
Q 010532 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (508)
Q Consensus 45 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (508)
++.++|+..++++|+++|+.+. + +++||+||.+++.++|+.|++.|+.+||+|+++++|+.++++++|||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4789999999999999999864 2 479999999999999999999999999999999999999999999999
Q ss_pred hhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHH
Q 010532 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (508)
Q Consensus 125 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (508)
++|++++|+++.++.+++..+++.++++++|++......+.+..... +.+..++.+++..... ........|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHAS-----EGGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCccccc-----CCccccccHHH
Confidence 99999999999999999999999999999999987766655544333 4555666665432110 01223445666
Q ss_pred HHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHH
Q 010532 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (508)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~ 284 (508)
+...... ........+++++++|||||||.||+|.+||+++...+......+ .+..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~ 218 (515)
T TIGR03098 146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN 218 (515)
T ss_pred hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence 6543321 122334568899999999999999999999999998887755433 678889999999999999988
Q ss_pred HHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCC
Q 010532 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363 (508)
Q Consensus 285 ~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (508)
..+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....
T Consensus 219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 269 (515)
T TIGR03098 219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP----------------------------- 269 (515)
T ss_pred HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence 88888999999999876 899999999999999999999999887541000
Q ss_pred CCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCcccCCcccc
Q 010532 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (508)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (508)
+ ....++|.+++||+++++++.+.+++.+ ++.+++.||+||++.............++++|+
T Consensus 270 -----~------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~ 332 (515)
T TIGR03098 270 -----E------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK 332 (515)
T ss_pred -----C------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence 0 0114799999999999999999999988 688999999999987655443332334589999
Q ss_pred cccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc------------cCceecCcccccc
Q 010532 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------------DGWFHTGCPHLFL 506 (508)
Q Consensus 443 p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~------------~gw~~TGD~g~~~ 506 (508)
|+++++++|++ +++..++ .++.|||+++|+.++.|||++++.+.+.|. ++||+|||+|++.
T Consensus 333 ~~~~~~~~i~~-~~~~~~~--~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~ 405 (515)
T TIGR03098 333 AIPNAEVLVLR-EDGSECA--PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRD 405 (515)
T ss_pred ecCCCEEEEEC-CCCCCCC--CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEc
Confidence 99999999999 7776554 458999999999999999999998877662 3489999999874
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-49 Score=447.17 Aligned_cols=399 Identities=22% Similarity=0.292 Sum_probs=314.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010532 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
.....+++.+.+.++++++||++|+++. .+ +++||+||.++++++|+.|++. +++||+|+++++|++++++
T Consensus 610 ~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~~-~~~g~~V~i~~~n~~~~~~ 680 (1146)
T PRK08633 610 RKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGAL 680 (1146)
T ss_pred hcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHHh-CCCCCeEEEECCCchHHHH
Confidence 4466688999999999999999999753 22 4699999999999999999874 8999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCC-CCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+++||+++|++++|+++..+.+++.++++++++++++++++....+.+.... .......++..++......
T Consensus 681 ~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 752 (1146)
T PRK08633 681 ANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS-------- 752 (1146)
T ss_pred HHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------
Confidence 9999999999999999999999999999999999999987766554421100 1122334444433211000
Q ss_pred EEeeHHHHHHcccCC-----CCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 198 AVYSWDEFLQLGENK-----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
....+.+........ ........++++++++|||||||.||+|.++|+++...+......+ ...++|+++
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l 827 (1146)
T PRK08633 753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVIL 827 (1146)
T ss_pred hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 000111111111000 0001344678999999999999999999999999998887754433 677899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
+.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.+.+...
T Consensus 828 ~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------- 891 (1146)
T PRK08633 828 SSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK---------------- 891 (1146)
T ss_pred EcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc----------------
Confidence 9999999999976 6777999999998764 89999999999999999999999988765210
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceecc
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~ 429 (508)
.++.+ .+++|.+++||+++++++.+.+++.+|+++++.||+||++++++..
T Consensus 892 ---------------------~~~~~--------~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~ 942 (1146)
T PRK08633 892 ---------------------LHPLM--------FASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVN 942 (1146)
T ss_pred ---------------------cCccc--------CCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEe
Confidence 11111 1489999999999999999999999999999999999998877654
Q ss_pred CCCC---------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhccc----Cc
Q 010532 430 LPNE---------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD----GW 496 (508)
Q Consensus 430 ~~~~---------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~----gw 496 (508)
.+.. ...++++|+|+||++++|+|.++++++ +.|+.|||+|+|++++.||+|+|+.+.+.|.+ ||
T Consensus 943 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~ 1020 (1146)
T PRK08633 943 LPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEEL--PPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGW 1020 (1146)
T ss_pred cCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccC--CCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCe
Confidence 3321 123578999999999999993345444 45689999999999999999999999998866 99
Q ss_pred eecCcccccc
Q 010532 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|+++
T Consensus 1021 ~~TGD~~~~~ 1030 (1146)
T PRK08633 1021 YVTGDKGHLD 1030 (1146)
T ss_pred EECCCEEEEc
Confidence 9999999975
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=416.02 Aligned_cols=389 Identities=15% Similarity=0.180 Sum_probs=293.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCC---CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGK---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~---~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
....|+.++++++++++|+++|+++. +.. .+..+.+||+||.++++++|++|.+. +++||+|+++++|+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~ 106 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYV 106 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHH
Confidence 34578999999999999999999875 311 12346899999999999999999987 999999999999999999
Q ss_pred HHHHHHHhhCCeeeec-cCCCC--hHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCC-CCccEEEEeCCCChhhHHHHh
Q 010532 118 IGMEACNALGLHCVPL-YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 118 ~~~lA~~~~G~~~vpl-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~l~~vi~~~~~~~~~~~~~~ 193 (508)
+++|||+++|++++|+ ++.++ .+++.++++.++++++|+++.....+........ .....++.++....
T Consensus 107 ~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 179 (612)
T PRK12476 107 AGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD------- 179 (612)
T ss_pred HHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc-------
Confidence 9999999999999999 57766 7899999999999999998776554433221110 11123343332110
Q ss_pred hcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccC-CCCCcEEE
Q 010532 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK-LTSEDVYV 272 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~-~~~~~~~l 272 (508)
. ...........++++++|+|||||||.||||.++|+++...+......+ . +.++++++
T Consensus 180 --------------~-~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l 239 (612)
T PRK12476 180 --------------S-AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGV 239 (612)
T ss_pred --------------c-ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEE
Confidence 0 0011112234678999999999999999999999999987766543322 4 57789999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEec---C--CHHHHHHHhh--hcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHH
Q 010532 273 SYLPLAHIFDRAIEEVFISNGAAIGFWR---G--DVKLLLEDIG--ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (508)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~vv~~~---~--~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (508)
+++|++|.+|+...+.+++.|+.+++.. + ++..+++.++ +++++.++.+|.++..+........
T Consensus 240 ~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~--------- 310 (612)
T PRK12476 240 SWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA--------- 310 (612)
T ss_pred EeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh---------
Confidence 9999999999877666655555555543 2 7889999995 5899999999998887754210000
Q ss_pred HHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh---CC---ceEeccCc
Q 010532 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA---CA---HVLQGYGL 419 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~~---~v~~~yG~ 419 (508)
.....++ +++| +++||+++++++.+.+++.| |+ .+++.||+
T Consensus 311 ------------------------~~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~ 357 (612)
T PRK12476 311 ------------------------EGDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI 357 (612)
T ss_pred ------------------------hhcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence 0000011 3789 99999999999999999887 43 48999999
Q ss_pred ccCCcceeccCCCCc--------------------------ccCCcccccccCeeEEEeecCC-CcccCCCCCCCceEEE
Q 010532 420 TETCAGTFVSLPNEM--------------------------SMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCV 472 (508)
Q Consensus 420 tE~~~~~~~~~~~~~--------------------------~~~~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v 472 (508)
||++..++...+... ...+++|+|++|++++|+| ++ +.+++ .|+.|||+|
T Consensus 358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~~--~g~~GEl~v 434 (612)
T PRK12476 358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAELP--DGEVGEIWL 434 (612)
T ss_pred hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCCC--CCCEEEEEE
Confidence 999866543322100 0125889999999999999 66 66555 458999999
Q ss_pred ecCcccccccCChhhhhhhcc--------c-----------CceecCccccc
Q 010532 473 KGSTVFSGYYKREDLTKEVMV--------D-----------GWFHTGCPHLF 505 (508)
Q Consensus 473 ~g~~v~~gY~~~~~~~~~~f~--------~-----------gw~~TGD~g~~ 505 (508)
+|++++.||||+|+.|.+.|. + +||+|||+|++
T Consensus 435 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~ 486 (612)
T PRK12476 435 HGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY 486 (612)
T ss_pred cCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee
Confidence 999999999999999998883 2 49999999975
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=416.90 Aligned_cols=401 Identities=17% Similarity=0.159 Sum_probs=302.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.+.+..+ .+|+++|+++. +. .+..+++||+||.+++.++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 85 ~~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA 158 (655)
T PRK03584 85 RLNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLA 158 (655)
T ss_pred EeeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 34566555443 57999999876 33 33457899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCCCCccEEEEeCCCChhhHHHHh
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~ 193 (508)
|+++|++++|+++.++.+++..+++.++++++|+++... ..+.+... ..+.++.++.++...... ..
T Consensus 159 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~---~~ 234 (655)
T PRK03584 159 TASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRA-ALPSLEHVVVVPYLGPAA---AA 234 (655)
T ss_pred HHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHh-cCCCccEEEEEecCCCcc---cc
Confidence 999999999999999999999999999999999987532 22222222 124555666654322100 00
Q ss_pred hcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHH-HhhhhhhhhhcccCCCCCcEEE
Q 010532 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF-IAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~~~~l 272 (508)
........|++++...............+++++|+|||||||.||||+++|++++.. +..... ...+.++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~-----~~~~~~~d~~~ 309 (655)
T PRK03584 235 AALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGL-----HCDLGPGDRFF 309 (655)
T ss_pred cccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHH-----hcCCCCCCEEE
Confidence 011124457776653222222233456789999999999999999999999987643 443222 23678889999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010532 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
+..++.|... ...+.+++.|+++++.+. ++..+++.++++++|++..+|++++.+.+.-.
T Consensus 310 ~~~~~~~~~~-~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------------- 374 (655)
T PRK03584 310 WYTTCGWMMW-NWLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL-------------- 374 (655)
T ss_pred EcCCchHHhH-HHHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC--------------
Confidence 9999988643 235577999999999752 78999999999999999999999988754100
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh--CCceEeccCcccCCcc
Q 010532 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAG 425 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~ 425 (508)
.+ ....++ ++||.+++||+++++++.+++.+.+ ++.+.+.||+||+++.
T Consensus 375 --------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~ 425 (655)
T PRK03584 375 --------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSC 425 (655)
T ss_pred --------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcc
Confidence 00 000112 3899999999999999999999887 4789999999998765
Q ss_pred eeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecC--cccccccCChhhhh--hh-c--ccCcee
Q 010532 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTK--EV-M--VDGWFH 498 (508)
Q Consensus 426 ~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~--~v~~gY~~~~~~~~--~~-f--~~gw~~ 498 (508)
.....+.....++++|.|++|++++|+| +++..+ .|+.|||+|+|| +++.|||++++.+. +. | .+|||+
T Consensus 426 ~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~ 501 (655)
T PRK03584 426 FVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWR 501 (655)
T ss_pred cccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEee
Confidence 4433332233458999999999999999 877765 458999999996 79999999998543 22 2 268999
Q ss_pred cCcccccc
Q 010532 499 TGCPHLFL 506 (508)
Q Consensus 499 TGD~g~~~ 506 (508)
|||+|+++
T Consensus 502 TGDl~~~d 509 (655)
T PRK03584 502 HGDWIEIT 509 (655)
T ss_pred cCCeEEEC
Confidence 99999985
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=407.94 Aligned_cols=407 Identities=21% Similarity=0.283 Sum_probs=312.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.+..+++.++|..+++++||++|+++. + +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++
T Consensus 19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~ 89 (557)
T PRK07059 19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA 89 (557)
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence 345678999999999999999999864 3 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhH-H--------
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR-E-------- 190 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~-~-------- 190 (508)
+|||+++|++++|+++..+.+++.++++.++++++|+++.....+...... ...+.++.......... .
T Consensus 90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (557)
T PRK07059 90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR 167 (557)
T ss_pred HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence 999999999999999999999999999999999999987765444333221 22333333221100000 0
Q ss_pred -----HHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC
Q 010532 191 -----EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (508)
Q Consensus 191 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (508)
...........+++++..............++++++++|||||||.||+|.++|.+++..+......+.. ....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~ 246 (557)
T PRK07059 168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP-AFEK 246 (557)
T ss_pred cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcc-cccc
Confidence 0000011234455655543322222344578899999999999999999999999998765443221111 0111
Q ss_pred ---CCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhcc
Q 010532 266 ---TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (508)
Q Consensus 266 ---~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (508)
.....+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.+++++++.+.++|.++..+.+...
T Consensus 247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~------ 320 (557)
T PRK07059 247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD------ 320 (557)
T ss_pred cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC------
Confidence 12457888899999988765 5566788888777653 88999999999999999999999998765210
Q ss_pred ChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCc
Q 010532 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~ 419 (508)
....++ +++|.++.||+++++.+.+.+.+.+++++++.||+
T Consensus 321 -------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~ 361 (557)
T PRK07059 321 -------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGL 361 (557)
T ss_pred -------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeecccc
Confidence 001111 37899999999999999999999899999999999
Q ss_pred ccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCcee
Q 010532 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498 (508)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~ 498 (508)
||++.++..........++++|+|+++++++|+| +++..++ .|+.|||+++|+.++.||+++++.+.+.| .+|||+
T Consensus 362 tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~ 438 (557)
T PRK07059 362 SETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLP--LGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFR 438 (557)
T ss_pred ccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCC--CCCceEEEEeCCccchhhhcCHHHHhhhcccCCcee
Confidence 9998876655443333457999999999999999 7776554 45899999999999999999999999888 789999
Q ss_pred cCcccccc
Q 010532 499 TGCPHLFL 506 (508)
Q Consensus 499 TGD~g~~~ 506 (508)
|||+|++.
T Consensus 439 TGDl~~~~ 446 (557)
T PRK07059 439 TGDVGVMD 446 (557)
T ss_pred cCcEEEEc
Confidence 99999874
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=423.49 Aligned_cols=383 Identities=18% Similarity=0.247 Sum_probs=293.5
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 42 GMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
+..|+.+.|+++++++|| ++|+.+. +. +++||+||.++++++|+.|.+. +++||+|+++++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV---NF-----TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC---CC-----CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 457899999999999998 5777532 11 4699999999999999999887 599999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhh-cCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK-TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
|||+++|++++|+++.++.+++.+++++++++++|++.+....... ........+. ++.+.+... .
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------D 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------h
Confidence 9999999999999999999999999999999999998765432110 0010111222 222221100 0
Q ss_pred eeHHHH--H-HcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecC
Q 010532 200 YSWDEF--L-QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (508)
Q Consensus 200 ~~~~~l--~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 276 (508)
..+.+. . ..............++++++++|||||||.||||++||+++...+..+...+ ++..+|++++.+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 414 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP 414 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence 011110 0 0000001111234678999999999999999999999999998887754433 6788999999999
Q ss_pred hHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 277 LAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
++|.+++.. ++.++..|+++++.+. +...+++.++++++|.++++|+++..+.+..
T Consensus 415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------- 473 (718)
T PRK08043 415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--------------------- 473 (718)
T ss_pred chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence 999999876 6677999999998864 6778899999999999999999987654310
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
+..+ .+++|.+++||+++++++.+.+++.+|+++++.||+||++++++...+..
T Consensus 474 ------------------~~~~--------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~ 527 (718)
T PRK08043 474 ------------------NPYD--------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA 527 (718)
T ss_pred ------------------Cccc--------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence 0001 14899999999999999999999999999999999999987766544322
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccC--Chhh-------hhhhc-ccCceecCccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK--REDL-------TKEVM-VDGWFHTGCPH 503 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~--~~~~-------~~~~f-~~gw~~TGD~g 503 (508)
...+++|+|+||++++|+| +++. ++.|||+++|++++.|||+ +++. +.+.+ .+|||+|||+|
T Consensus 528 -~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg 599 (718)
T PRK08043 528 -AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV 599 (718)
T ss_pred -cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence 3458999999999999998 5442 3569999999999999998 4442 22222 58999999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
+++
T Consensus 600 ~~d 602 (718)
T PRK08043 600 RFD 602 (718)
T ss_pred EEc
Confidence 974
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=406.09 Aligned_cols=393 Identities=25% Similarity=0.372 Sum_probs=311.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.++.++|++.++++|+++|++.. +.. +.+||.||.+++.++|..|.+.|+++||+|+|+++|++++++++|||
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~ 90 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT 90 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 57999999999999999999875 332 57999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhcCC------------CCCCCccEEEEeCCCCh
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFP------------KTTEHLKTIVSFSKVKP 186 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~------------~~~~~l~~vi~~~~~~~ 186 (508)
+++|++++|+++..+.+++..+++.++++++|++.... ..+..... ...+.+..++.......
T Consensus 91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
T PRK12583 91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP 170 (558)
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence 99999999999999999999999999999999976432 11111110 01123334444332211
Q ss_pred hhHHHHhhcCcEEeeHHHHHHcccCC-----CCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhc
Q 010532 187 EQREEIEKYGLAVYSWDEFLQLGENK-----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (508)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~ 261 (508)
.....|+++....... ........++++++++|||||||.||+|.++|+++...+..+...+
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~--- 237 (558)
T PRK12583 171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL--- 237 (558)
T ss_pred ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh---
Confidence 1233455544332211 0111233578899999999999999999999999988877754443
Q ss_pred ccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhc
Q 010532 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (508)
Q Consensus 262 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (508)
++..+|++++.+|++|.+|... .+.++..|+++++... ++..+++.++++++|+++++|+++..+.......
T Consensus 238 --~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--- 312 (558)
T PRK12583 238 --GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG--- 312 (558)
T ss_pred --CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc---
Confidence 6788899999999999999876 5666899999887643 8999999999999999999999987765421100
Q ss_pred cChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEecc
Q 010532 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGY 417 (508)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~y 417 (508)
..++ +++|.+++||+++++++.+.+.+.++ ..+++.|
T Consensus 313 ----------------------------------~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~Y 350 (558)
T PRK12583 313 ----------------------------------NFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAY 350 (558)
T ss_pred ----------------------------------CCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceeccc
Confidence 0011 37999999999999999999988876 4799999
Q ss_pred CcccCCcceeccCCCC--cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-cc
Q 010532 418 GLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD 494 (508)
Q Consensus 418 G~tE~~~~~~~~~~~~--~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~ 494 (508)
|+||+++++..+.... ....+++|+|++++.++|+| +++.+++ .|+.|||+|+|+.++.||+|+++.+.+.| .+
T Consensus 351 G~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 427 (558)
T PRK12583 351 GMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVP--RGEIGELCTRGYSVMKGYWNNPEATAESIDED 427 (558)
T ss_pred cccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCCC--CCCeeEEEEEeCccchhhcCChHHHHhhcCCC
Confidence 9999998876654322 22347899999999999999 7665444 45899999999999999999999999888 89
Q ss_pred CceecCcccccc
Q 010532 495 GWFHTGCPHLFL 506 (508)
Q Consensus 495 gw~~TGD~g~~~ 506 (508)
|||+|||+|++.
T Consensus 428 ~~~~TGDl~~~~ 439 (558)
T PRK12583 428 GWMHTGDLATMD 439 (558)
T ss_pred CCeeccceEEEC
Confidence 999999999874
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=414.32 Aligned_cols=401 Identities=16% Similarity=0.147 Sum_probs=296.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.+.+.. +.++++|+++. +. .+..+++||+||.+++.++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 86 ~~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA 158 (652)
T TIGR01217 86 RLNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLA 158 (652)
T ss_pred eeeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 3455555443 35789999886 33 33457899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC---------HHHHhhcCCCCCCCccEEEEeCCCChhhHHHHh
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK---------IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~ 193 (508)
|+++|++++|+++.++.+++..++++++|+++|+++.. .+.+.+..... +.++.++.+...........
T Consensus 159 ~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~- 236 (652)
T TIGR01217 159 TASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKEL-PTLRAVVHIPYLGPRETEAP- 236 (652)
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcC-CCccEEEEEeCCCCcccccc-
Confidence 99999999999999999999999999999999998753 23333332222 45666666543221000000
Q ss_pred hcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHH-HhhhhhhhhhcccCCCCCcEEE
Q 010532 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF-IAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~-~~~~~~~~~~~~~~~~~~~~~l 272 (508)
.......|+++................+++++|+|||||||.||||+++|.+++.. ..... ...++.++|+++
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~d~~~ 310 (652)
T TIGR01217 237 -KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHG-----LHCDLGPGDRLF 310 (652)
T ss_pred -cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHH-----hccCCCCCcEEE
Confidence 00123457777654222222223446689999999999999999999999986543 33322 223678899999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010532 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
+..|++|... ..++.+++.|+++++++. ++..+++.++++++|++..+|.+++.+.+. ..
T Consensus 311 ~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~~------------- 375 (652)
T TIGR01217 311 YYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-GV------------- 375 (652)
T ss_pred EeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-CC-------------
Confidence 9999998753 334577999999999852 678999999999999987777776654321 00
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC--CceEeccCcccCCcc
Q 010532 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC--AHVLQGYGLTETCAG 425 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~--~~v~~~yG~tE~~~~ 425 (508)
++ ....++ ++||.+++||+++++++.+++.+.++ +.+.+.||+||+++.
T Consensus 376 --------------------~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~ 426 (652)
T TIGR01217 376 --------------------HP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSC 426 (652)
T ss_pred --------------------Cc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhcc
Confidence 00 011112 48999999999999999999998875 457789999997543
Q ss_pred eeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecC--cccccccCChhhhh--hh-c--ccCcee
Q 010532 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTK--EV-M--VDGWFH 498 (508)
Q Consensus 426 ~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~--~v~~gY~~~~~~~~--~~-f--~~gw~~ 498 (508)
.....+......+++|.|.+|++++|+| ++|.++ .|+.|||+++|| +++.||||+++.+. +. | .+|||+
T Consensus 427 ~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~ 502 (652)
T TIGR01217 427 FAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWR 502 (652)
T ss_pred ccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEE
Confidence 3322222223348899999999999999 888765 368999999996 68999999998654 22 3 279999
Q ss_pred cCcccccc
Q 010532 499 TGCPHLFL 506 (508)
Q Consensus 499 TGD~g~~~ 506 (508)
|||+|+++
T Consensus 503 tGDlg~~d 510 (652)
T TIGR01217 503 HGDWITLT 510 (652)
T ss_pred cCCcEEEC
Confidence 99999985
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=401.03 Aligned_cols=384 Identities=23% Similarity=0.329 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.++|.+.+..++ .+|+++|+... ++ +.+||.||.++++++|..|++.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la 72 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA 72 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 368999999999 99999999764 33 5799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++.++++++++++.....+...... .....++.++.... ..+
T Consensus 73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~ 137 (504)
T PRK07514 73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL 137 (504)
T ss_pred HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence 999999999999999999999999999999999998876655443221 12222333332211 112
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
.+..... ..........++++++++|||||||.||+|.++|+++...+......+ ++..+|++++.+|++|..+
T Consensus 138 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 211 (504)
T PRK07514 138 LEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG 211 (504)
T ss_pred HHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence 2221111 111122344678999999999999999999999999998877644433 6778899999999999999
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
+.. ...+++.|+++++.+. ++..+++.+ .++|++.++|.++.++.+..
T Consensus 212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~---------------------------- 261 (504)
T PRK07514 212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEP---------------------------- 261 (504)
T ss_pred HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCC----------------------------
Confidence 875 5667999999999876 899999998 47999999999998876420
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~ 440 (508)
..+...+ +++|.+++||+++++++.+.+++.++.++++.||+||++..+...... ....+++
T Consensus 262 ---------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~ 323 (504)
T PRK07514 262 ---------RLTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTV 323 (504)
T ss_pred ---------CCCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCccc
Confidence 0000111 379999999999999999999999999999999999998665433322 2234789
Q ss_pred cccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
|.|+++++++|+|.+++.. ++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++.
T Consensus 324 G~~~~~~~v~i~d~~~~~~--~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~ 388 (504)
T PRK07514 324 GFPLPGVSLRVTDPETGAE--LPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKID 388 (504)
T ss_pred ccCCCCcEEEEEECCCCCC--CCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEc
Confidence 9999999999999444444 4456899999999999999999999999999 68999999999874
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=451.10 Aligned_cols=399 Identities=15% Similarity=0.097 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCC---CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGK---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~---~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
.++.++|+++++++||++|+++. +.. ....+++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~ 312 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAV 312 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHH
Confidence 58999999999999999999864 211 122368999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC---HHHHhhcCCCC---CCCccEEEEeCCCChhhHHHHhh
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK---IPEMLKTFPKT---TEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~~---~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
|||+++|++++|++|.++.+++..+++.++++++|++... ...+....... ...+..+.........
T Consensus 313 lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 385 (1389)
T TIGR03443 313 MGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV------- 385 (1389)
T ss_pred HHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc-------
Confidence 9999999999999999999999999999999999987642 11111111000 0111111111100000
Q ss_pred cCcEEeeHHHHHHccc--CCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 195 YGLAVYSWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
.........+...... ..........++++++|+|||||||.||||+++|+++.+.+.++...+ ++..+|+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 460 (1389)
T TIGR03443 386 GGSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKFT 460 (1389)
T ss_pred ccccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0000000001110000 000111234678999999999999999999999999999988755444 678899999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHH
Q 010532 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (508)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (508)
...|++|..++..++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+......
T Consensus 461 ~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------- 526 (1389)
T TIGR03443 461 MLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQATT-------------- 526 (1389)
T ss_pred EecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccc--------------
Confidence 99999998887778889999999999864 688999999999999999999999887531000
Q ss_pred HHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCccee
Q 010532 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTF 427 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~ 427 (508)
..+++|.+++||+++++.+.+.+++.+ ++.+++.||+||++..++
T Consensus 527 ----------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 572 (1389)
T TIGR03443 527 ----------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS 572 (1389)
T ss_pred ----------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence 013799999999999999998888765 789999999999987666
Q ss_pred ccCCCCc----------ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c---
Q 010532 428 VSLPNEM----------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V--- 493 (508)
Q Consensus 428 ~~~~~~~----------~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~--- 493 (508)
....... ....++|+|+++++++|+| +++...+++.|+.|||+|+||+++.||+|+|+.|.++| .
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~ 651 (1389)
T TIGR03443 573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWF 651 (1389)
T ss_pred EEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcc
Confidence 4332110 1235789999999999999 66655666677999999999999999999999999988 2
Q ss_pred -------------------------cCceecCcccccc
Q 010532 494 -------------------------DGWFHTGCPHLFL 506 (508)
Q Consensus 494 -------------------------~gw~~TGD~g~~~ 506 (508)
+|||+|||+|++.
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~ 689 (1389)
T TIGR03443 652 VDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYL 689 (1389)
T ss_pred cCcccccccccccccccccccCCCccceeecCCceeEc
Confidence 5799999999874
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=401.45 Aligned_cols=389 Identities=21% Similarity=0.257 Sum_probs=314.0
Q ss_pred CCCHHHHHHHH-HHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 43 MESCWDVFRMA-VERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 43 ~~tl~~~l~~~-a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
.+...++|.++ ++.+||++|+++. . ..+||.||.++++++|+.|.+.|+++||+|+++++|+.+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD----I-----SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 45677888887 6779999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++.++++.++++++|++....+.+.+..... +.++.++..+.... ....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~ 141 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS-PHLEHRVVVGRPEA-----------GEVQ 141 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcC-CCccEEEEeCCCCc-----------cccc
Confidence 99999999999999999999999999999999999988776665543322 45556665543211 1234
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010532 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
+.++...... ........++++++++|||||||.||+|.++|+++...+..... ...++..+|+++..+|++|..
T Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~ 216 (508)
T TIGR02262 142 LAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYAR----NTLGIREDDVVFSAAKLFFAY 216 (508)
T ss_pred HHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhH----HhcCCCCCCEEEEcCchHHHH
Confidence 4444433221 12223445789999999999999999999999999887655221 122578889999999999998
Q ss_pred HHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 282 DRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 282 g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
++.. ++.++..|+++++.+. ++..+++.|++++++.+.++|.++..+.+....
T Consensus 217 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~------------------------ 272 (508)
T TIGR02262 217 GLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL------------------------ 272 (508)
T ss_pred HHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc------------------------
Confidence 8865 5667999999998864 799999999999999999999988776431000
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCC
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (508)
.. ....++|.+++||+++++++.+.|++.+++++++.||+||++++...+..... ..+
T Consensus 273 -------------~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~~ 330 (508)
T TIGR02262 273 -------------PA--------EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RYG 330 (508)
T ss_pred -------------cc--------cccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CCC
Confidence 00 00137999999999999999999999999999999999999987665543322 237
Q ss_pred cccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 439 s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
++|+|+++++++|+| +++..++ .|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++.
T Consensus 331 ~~G~~~~g~~v~i~d-~~~~~~~--~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~ 395 (508)
T TIGR02262 331 TSGKPVPGYRLRLVG-DGGQDVA--AGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRN 395 (508)
T ss_pred CcCCCCCCcEEEEEC-CCCCCCC--CCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEc
Confidence 899999999999999 7776554 4589999999999999999999999999999999999999873
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-48 Score=413.36 Aligned_cols=401 Identities=15% Similarity=0.130 Sum_probs=298.8
Q ss_pred CCCCHHH-HHHHHHHhCCCCCceeEEeeccCC--CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010532 42 GMESCWD-VFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 42 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
...|+.+ +|+++++++||++|+++. +.. ....+++||+||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus 172 ~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~vi 248 (728)
T PLN03052 172 AVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVI 248 (728)
T ss_pred CEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3344544 677766778999999986 432 2245789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCCCCccEEEEeCCCChhhH
Q 010532 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQR 189 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~ 189 (508)
++|||+++|++++|+++.++.+++..++++++|+++|+++... ..+.+.. . ..++++........
T Consensus 249 a~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~----~--~~~iv~~~~~~~~~ 322 (728)
T PLN03052 249 IYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK----A--PKAIVLPADGKSVR 322 (728)
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc----C--CcEEEEeCCCCccc
Confidence 9999999999999999999999999999999999999987532 1222111 1 12333322110000
Q ss_pred HHHhhcCcEEeeHHHHHHcccC----CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC
Q 010532 190 EEIEKYGLAVYSWDEFLQLGEN----KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (508)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (508)
. ........|++++..... ...+.....++++++|+|||||||.||||+++|.+++..+..... ..++
T Consensus 323 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~-----~~~l 394 (728)
T PLN03052 323 --V-KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWA-----HLDI 394 (728)
T ss_pred --c-ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHH-----hcCC
Confidence 0 000123457777654211 111111235689999999999999999999999998776554322 2367
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhH
Q 010532 266 TSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (508)
Q Consensus 266 ~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (508)
.++|++++..+++|..+...++.+|..|++++++++ .+..+++.++++++|++.++|++++.+.+.
T Consensus 395 ~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~------------ 462 (728)
T PLN03052 395 RKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNT------------ 462 (728)
T ss_pred CCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhc------------
Confidence 889999999999999988777788999999999975 557899999999999999999999887541
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccC
Q 010532 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTET 422 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~ 422 (508)
......++ ++||.++++|++++++..+++.+.++ .++.+.||+||+
T Consensus 463 -------------------------~~~~~~dl--------ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~ 509 (728)
T PLN03052 463 -------------------------NCMAGLDW--------SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTEL 509 (728)
T ss_pred -------------------------CCcccCCh--------hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhh
Confidence 00011122 38999999999999999888888766 579999999999
Q ss_pred CcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCc--ccccccCChhhhhhhcc-----cC
Q 010532 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST--VFSGYYKREDLTKEVMV-----DG 495 (508)
Q Consensus 423 ~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~--v~~gY~~~~~~~~~~f~-----~g 495 (508)
++......+.....++++|.|++|++++|+| ++|++++.+..+.|||+++++. ...+|+|+.. +...|. +|
T Consensus 510 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g 587 (728)
T PLN03052 510 GGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNG 587 (728)
T ss_pred CcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCC
Confidence 8755443332233458899999999999999 8888776653246999998653 3457777643 333331 24
Q ss_pred --ceecCcccccc
Q 010532 496 --WFHTGCPHLFL 506 (508)
Q Consensus 496 --w~~TGD~g~~~ 506 (508)
||+|||+|+++
T Consensus 588 ~~~~~tGDl~~~d 600 (728)
T PLN03052 588 KILRRHGDIFERT 600 (728)
T ss_pred CEEEecCceEEEC
Confidence 99999999875
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=403.23 Aligned_cols=403 Identities=18% Similarity=0.244 Sum_probs=314.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010532 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
+.+...++.++++++++++||+++++... + +..+++||.||.++++++|+.|.+.|+++||+|+++++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~ 79 (542)
T PRK06018 5 MQDWPLLCHRIIDHAARIHGNREVVTRSV--E---GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLE 79 (542)
T ss_pred hhcCCCCHHHHHHHHHHhCCCceEEEeec--c---CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHH
Confidence 44556799999999999999999998530 2 223689999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
+++||+++|++++|+++..+.+++..+++.++++.++++.+..+.+.+..... +.++.++...+..... ......
T Consensus 80 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~ 154 (542)
T PRK06018 80 AWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKL-PSVERYVVLTDAAHMP----QTTLKN 154 (542)
T ss_pred HHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhC-CCccEEEEeccccccc----ccCccc
Confidence 99999999999999999999999999999999999999988776665544333 4556666554322100 000112
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHH-HHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV-TFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
...+++++..... ........++++++++|||||||.||+|.+||++++ ...... .....++..+|+++...|+
T Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~p~ 229 (542)
T PRK06018 155 AVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMAN----NGDALGTSAADTMLPVVPL 229 (542)
T ss_pred cccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHh----hhhhcCCCCCCEEEEecCH
Confidence 3456666554321 222234566889999999999999999999999743 222111 1112356788999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 278 AHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
+|.+++...+.++..|+++++... ++..+++.++++++|++.++|+++..+.+......
T Consensus 230 ~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------- 290 (542)
T PRK06018 230 FHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG------------------- 290 (542)
T ss_pred HHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-------------------
Confidence 999888777778899999988753 88999999999999999999999998865321110
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC--
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-- 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (508)
.++ +++|.+++||+++++++.+.+++ +++.+++.||+||++.+.+.+....
T Consensus 291 ------------------~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~ 343 (542)
T PRK06018 291 ------------------LKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPF 343 (542)
T ss_pred ------------------CCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCcccc
Confidence 001 37999999999999999999999 8999999999999987765442111
Q ss_pred --------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccc
Q 010532 434 --------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHL 504 (508)
Q Consensus 434 --------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~ 504 (508)
.....++|+|.++++++|+| +++..++.+.+..|||+++|++++.||+++. .+.+ .+|||+|||+|+
T Consensus 344 ~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~ 419 (542)
T PRK06018 344 SKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVAT 419 (542)
T ss_pred ccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEE
Confidence 01135789999999999999 8888787755568999999999999999842 2333 689999999998
Q ss_pred cc
Q 010532 505 FL 506 (508)
Q Consensus 505 ~~ 506 (508)
+.
T Consensus 420 ~~ 421 (542)
T PRK06018 420 ID 421 (542)
T ss_pred Ec
Confidence 64
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=398.98 Aligned_cols=380 Identities=22% Similarity=0.308 Sum_probs=304.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+.++.++++++++++|+++|+++. + +.+||.||.+++.++|..|.+.|+.+|++|+++++|++++++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~----~-----~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR----D-----QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 468899999999999999999764 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++.+++++++++.+...... . . ...+.++..... .+
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-----~--~~~~~~~~~~~~-------------~~ 130 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-----E--TPKIVIDAAAQA-------------DS 130 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-----c--cceEEecCcccc-------------hh
Confidence 9999999999999999999999999999999999876543321 0 0 112222221100 01
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
..+.. ............++++++++|||||||.||+|.++|+++......... ...+..+++++..+|++|.++
T Consensus 131 ~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~ 204 (497)
T PRK06145 131 RRLAQ-GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVI-----ALGLTASERLLVVGPLYHVGA 204 (497)
T ss_pred HHHhc-cCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hhCCCCCcEEEEecCchhHhH
Confidence 11111 111111122346789999999999999999999999999866554322 236788899999999999988
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
+.. .+.++..|+++++.+. ++..+++.++++++|.+.++|+++..+++....
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~-------------------------- 258 (497)
T PRK06145 205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR-------------------------- 258 (497)
T ss_pred HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence 865 4567899999988876 999999999999999999999999887652110
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCC-CcccCC
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN-EMSMIG 438 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~-~~~~~~ 438 (508)
...++ +++|.+++||+++++++.+.+++.| +..+++.||+||+++.++..... .....+
T Consensus 259 -----------~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 319 (497)
T PRK06145 259 -----------DRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319 (497)
T ss_pred -----------ccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence 00011 3789999999999999999999888 57899999999999866544332 222347
Q ss_pred cccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 439 s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
++|+|+++++++|++ +++..++ .++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++.
T Consensus 320 ~~G~~~~~~~~~i~~-~~~~~~~--~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~ 384 (497)
T PRK06145 320 STGRALAHVEIRIAD-GAGRWLP--PNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLD 384 (497)
T ss_pred CcccCCCCceEEEEC-CCCCCCC--CCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEc
Confidence 899999999999999 7776554 4589999999999999999999999999999999999999875
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=402.82 Aligned_cols=389 Identities=21% Similarity=0.260 Sum_probs=311.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
.+..|+.++|.++++++|+++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~ 79 (524)
T PRK06188 9 HSGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAI 79 (524)
T ss_pred cCCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34568999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC-CHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK-KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+||+++|++++|+++..+.+++..+++.++++.++++.. .......... ....+..++.+......
T Consensus 80 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------ 146 (524)
T PRK06188 80 GAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLA-RVPSLKHVLTLGPVPDG------------ 146 (524)
T ss_pred HHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhh-hcCCceEEEEeCCccch------------
Confidence 999999999999999999999999999999999999876 3333322221 22444555555433210
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
....+.......... .....++++++++|||||||.||+|.++|.++...+......+ .+..++++++.+|++|
T Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~ 220 (524)
T PRK06188 147 VDLLAAAAKFGPAPL-VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSH 220 (524)
T ss_pred hhHHHhhhccCcccc-cccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchh
Confidence 001111111111111 1122456699999999999999999999999999888754433 6788999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
..++. .+..++.|+++++.+. ++..+++.++++++++++++|+++..+++....
T Consensus 221 ~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~------------------------ 275 (524)
T PRK06188 221 AGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL------------------------ 275 (524)
T ss_pred hhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc------------------------
Confidence 88864 4566889999999887 899999999999999999999999887652110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-----
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----- 433 (508)
... ..+++|.+++||++++++..+.+.+.++..+++.||+||++..+.......
T Consensus 276 -------------~~~--------~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 334 (524)
T PRK06188 276 -------------RTR--------DLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDD 334 (524)
T ss_pred -------------cCC--------CCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccc
Confidence 000 114899999999999999988888888999999999999976665443322
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
....+++|+|+++++++|++ +++..++ .|+.|||+++|+.++.||+++++.+...|.+|||+|||+|++.
T Consensus 335 ~~~~~~~G~p~~g~~v~i~~-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~ 404 (524)
T PRK06188 335 PKRLTSCGRPTPGLRVALLD-EDGREVA--QGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVARED 404 (524)
T ss_pred cccCCccccccCCcEEEEEc-CCCCCCC--CCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEc
Confidence 12347899999999999999 7776554 4589999999999999999999999999999999999999874
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=403.39 Aligned_cols=388 Identities=14% Similarity=0.185 Sum_probs=306.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.++|+++++ ||++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 4689999999887 999999864 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH----HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
|+++|+++++..+.....++..+++.+++++++++.... ...........+.++.++......
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------- 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG------------- 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence 999999988877777888999999999999999986531 112222222224444554433211
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.+++..... ........++++++++|||||||.||+|+++|+++...+......+ ++..++++++.+|++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 233 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA 233 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence 1234444433221 1122334678999999999999999999999999999888754433 678889999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. .+.++..|+++++.+. ++..+++.+++++++++.++|.++..+++........
T Consensus 234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~----------------- 296 (536)
T PRK10946 234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR----------------- 296 (536)
T ss_pred ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc-----------------
Confidence 9888764 5667999999988765 8999999999999999999999999887632111000
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
...+++|.+++||+++++.+.+.+.+.+|+++++.||+||++............
T Consensus 297 --------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 350 (536)
T PRK10946 297 --------------------------AQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER 350 (536)
T ss_pred --------------------------ccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence 001379999999999999999999998999999999999975443322222223
Q ss_pred cCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+ |+++++|+| ++++.++ .|+.|||+|+|+.++.||+++++.+.+.| .||||+|||+|+++
T Consensus 351 ~~~~~G~p~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d 420 (536)
T PRK10946 351 IFTTQGRPMSPDDEVWVAD-ADGNPLP--QGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSID 420 (536)
T ss_pred ccccCCcccCCCceEEEEC-CCCCCCC--CCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEEC
Confidence 347899999 899999999 7776555 45999999999999999999999999999 78999999999875
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=403.01 Aligned_cols=397 Identities=17% Similarity=0.193 Sum_probs=305.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
+...++.++|++.++++||++|+++. . +.+||+||.+++.++|+.|.+.|+++||+|+++++|+.++++++
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 77 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALIDE----D-----RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF 77 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEecC----C-----CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence 44568999999999999999999743 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhc
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~ 195 (508)
+||+++|++++|+++..+.+++.++++.++++++|++.+.. ..+..........++.++.++.......
T Consensus 78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 151 (540)
T PRK06164 78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------ 151 (540)
T ss_pred HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------
Confidence 99999999999999999999999999999999999987642 1222222222244555655542111000
Q ss_pred CcEEeeHHHHHHcccCCC---CCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 196 GLAVYSWDEFLQLGENKQ---FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
......+.++........ .......++++++++|||||||.||+|.++|+++...+..+...+ ++..+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l 226 (540)
T PRK06164 152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL 226 (540)
T ss_pred CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 000001111111100000 001223468899999999999999999999999998887755544 677899999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHH
Q 010532 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (508)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (508)
+.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~----------------- 289 (540)
T PRK06164 227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGE----------------- 289 (540)
T ss_pred EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc-----------------
Confidence 99999999999888888999999998875 899999999999999999999999998763000
Q ss_pred HhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcC-CCCCHHHHHHHHHHhCCceEeccCcccCCcceeccC
Q 010532 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA-APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (508)
. ...++++.+.++| .+...++.+++.+. ++++++.||+||++++++...
T Consensus 290 ---------------------~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~ 339 (540)
T PRK06164 290 ---------------------R--------ADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP 339 (540)
T ss_pred ---------------------c--------CCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence 0 0113678776665 56666777777765 899999999999988766554
Q ss_pred CCCc--ccCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 431 PNEM--SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 431 ~~~~--~~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.... ....+.|.|+ ++++++|+|.+++..+ +.|+.|||||+|++++.||+++++.+.+.| .+|||+|||+|+++
T Consensus 340 ~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~ 417 (540)
T PRK06164 340 ATDPVSVRIEGGGRPASPEARVRARDPQDGALL--PDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTR 417 (540)
T ss_pred CCCCCcceeccCccccCCCeEEEEecCCCCcCC--CCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEc
Confidence 3321 2224668875 8999999993344433 456899999999999999999999999999 78999999999875
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=479.50 Aligned_cols=376 Identities=18% Similarity=0.231 Sum_probs=311.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.....++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|+++++++
T Consensus 3091 ~~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~ 3161 (3956)
T PRK12467 3091 YPSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVA 3161 (3956)
T ss_pred CCccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHH
Confidence 344579999999999999999999875 3 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|++|.++.+++..+++.++++++|++......+... .. ..++.++..
T Consensus 3162 ~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~-----~~-~~~~~~~~~--------------- 3220 (3956)
T PRK12467 3162 LLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP-----AG-DTALTLDRL--------------- 3220 (3956)
T ss_pred HHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc-----cC-Cceeeecch---------------
Confidence 999999999999999999999999999999999999987654433211 01 112222111
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
.........+.....+++++||+|||||||.||||+++|+++.+.+......+ +++++|+++...|++|
T Consensus 3221 ------~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~f 3289 (3956)
T PRK12467 3221 ------DLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSF 3289 (3956)
T ss_pred ------hhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccH
Confidence 11111112222345789999999999999999999999999999998865544 7889999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
..+...++.+|+.|+++++.+. ++..+++.|+++++|++..+|++++.+.+....
T Consensus 3290 d~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------------- 3347 (3956)
T PRK12467 3290 DGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG---------------------- 3347 (3956)
T ss_pred hHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc----------------------
Confidence 8888778899999999999874 799999999999999999999999987642100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCc-
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM- 434 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~- 434 (508)
...+++|.+++|||++++++.+.+++.+ ++.++|.||+||+++.++.......
T Consensus 3348 -------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 3402 (3956)
T PRK12467 3348 -------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDA 3402 (3956)
T ss_pred -------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEeccccc
Confidence 0114799999999999999999998876 5789999999999887765443221
Q ss_pred ---ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccC-------ceecCccc
Q 010532 435 ---SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG-------WFHTGCPH 503 (508)
Q Consensus 435 ---~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~g-------w~~TGD~g 503 (508)
....++|+|++|++++|+| ++++++|. |+.|||+|+|++++.||+|+|+.|.++| .++ ||+|||+|
T Consensus 3403 ~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~--G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~ 3479 (3956)
T PRK12467 3403 VCEAPYAPIGRPVAGRSIYVLD-GQLNPVPV--GVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLA 3479 (3956)
T ss_pred ccCCCCCCCccccCCCEEEEEC-CCCCCCCC--CCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhh
Confidence 1236899999999999999 77776655 5999999999999999999999999999 554 69999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
++.
T Consensus 3480 ~~~ 3482 (3956)
T PRK12467 3480 RYR 3482 (3956)
T ss_pred eec
Confidence 985
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=401.24 Aligned_cols=405 Identities=22% Similarity=0.308 Sum_probs=308.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.++++++++++|+++|+.+. + +.+||.||.++++++|+.|.+.|+.+||+|+++++|+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR----D-----RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC----C-----cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4568999999999999999999764 2 479999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC--HHHHhhcCCCCCCCccEEEEeCCCChhhH--HHH-hhcC
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK--IPEMLKTFPKTTEHLKTIVSFSKVKPEQR--EEI-EKYG 196 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~l~~vi~~~~~~~~~~--~~~-~~~~ 196 (508)
||+++|++++|+++..+.+++.++++.++++++|+++.. .....+.... ..+..+++......... ... ....
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD 167 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence 999999999999999999999999999999999998642 1112221111 11333443332110000 000 0011
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhh-cccCCCCCcEEEEec
Q 010532 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES-VNEKLTSEDVYVSYL 275 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 275 (508)
....++++++..... ........++++++++|||||||.||+|.++|+++....... ..+.. ........+++++.+
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 245 (541)
T TIGR03205 168 PRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVL 245 (541)
T ss_pred cccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEec
Confidence 224456666543211 122234567899999999999999999999999987654421 11100 011223457899999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 276 p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
|++|.+++.. ++.++..|+++++.+. ++..+++.|++++++++.++|+++..+.+...
T Consensus 246 p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 305 (541)
T TIGR03205 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------- 305 (541)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--------------------
Confidence 9999988876 5566899999888865 99999999999999999999999988754100
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
....++ +++|.+++||+++++++.+++++.++.++++.||+||++..++......
T Consensus 306 -----------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 360 (541)
T TIGR03205 306 -----------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEG 360 (541)
T ss_pred -----------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCC
Confidence 000011 3789999999999999999999888999999999999988776554433
Q ss_pred cccCCcccccccCeeEEEeecC-CCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
...++++|+|+++++++|.+++ ++. +++.|+.|||+++|++++.||+|+++.+.+.|.++||+|||+|++.
T Consensus 361 ~~~~~~~G~~~~~~~~~v~~~d~~~~--~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~ 432 (541)
T TIGR03205 361 PDKPGSIGLMLPGIELDVVSLDDPTK--VLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMD 432 (541)
T ss_pred CCCCCCcceeccCceeEEEecCCCCc--cCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEc
Confidence 3345789999999999987533 333 3445689999999999999999999999999989999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=405.70 Aligned_cols=404 Identities=18% Similarity=0.233 Sum_probs=302.8
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.|+++.+++.+..+|+++|+.+. . +++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG----S-----VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 46889999999999999999753 2 46999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCC------CCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK------TTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+++|++++|+++.++.+++..+++.++++++|+++...+...+.... .......++.++...............
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 99999999999999999999999999999999998765443332110 001222344443221100000000112
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
+...+++++..........+....+++++++|||||||.||+|.+||+++......... ...+..++++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~ 245 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNAL-----IWGMNEGAVYLWTLPM 245 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHh-----hcCCCCCCEEEEecch
Confidence 34456666554321111112233456788999999999999999999998765544222 2357788999999999
Q ss_pred HHHHHHHHHH-HHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 278 AHIFDRAIEE-VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 278 ~~~~g~~~~~-~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
+|..++...+ ..+..|..+++..+++..+++.++++++|+++++|.++..+.+.......
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 306 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI------------------- 306 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-------------------
Confidence 9999887644 34677777777667999999999999999999999999988653211000
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCC----
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN---- 432 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~---- 432 (508)
...++++.++++|+++++.+.+.+++. +.++++.||+||+++.++.+...
T Consensus 307 -------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~ 360 (567)
T PLN02479 307 -------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
T ss_pred -------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence 001378899999999999999998875 88999999999996544332110
Q ss_pred ------CcccCCcccccccCee-EEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCccccc
Q 010532 433 ------EMSMIGTVGPPVPNVD-VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLF 505 (508)
Q Consensus 433 ------~~~~~~s~G~p~~~~~-v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~ 505 (508)
......+.|.+.++++ ++|+|.+++..++.+.++.|||+++|++++.|||++++.+.+.|.+|||+|||+|++
T Consensus 361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~ 440 (567)
T PLN02479 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK 440 (567)
T ss_pred ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence 0111245788888886 888883345555554346899999999999999999999999999999999999987
Q ss_pred c
Q 010532 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
.
T Consensus 441 ~ 441 (567)
T PLN02479 441 H 441 (567)
T ss_pred c
Confidence 4
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=401.87 Aligned_cols=404 Identities=24% Similarity=0.356 Sum_probs=309.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
..++.++|.++++++|+++|+++. + +.+||+||.+++.++|+.|. +.|+++||+|+++++|++++++++|
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999754 2 47999999999999999997 6899999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC--h---h-h-----HH
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK--P---E-Q-----RE 190 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~--~---~-~-----~~ 190 (508)
||+++|++++|++|.++.+++..+++.++++++++++.....+.+..... ....++...... . . . ..
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence 99999999999999999999999999999999999987765554433222 122333321000 0 0 0 00
Q ss_pred H----HhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCC
Q 010532 191 E----IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (508)
Q Consensus 191 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (508)
. ..........+.+................++++++++|||||||.||+|.++|.++...+......+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence 0 0000012234455444332222223345678999999999999999999999999988776644332111 1122
Q ss_pred C-CcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChh
Q 010532 267 S-EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342 (508)
Q Consensus 267 ~-~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~ 342 (508)
. .++++..+|++|.+++.. ....+..|+.+++... ++..+++.++++++|.+.++|.++..+.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------- 321 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTP---------- 321 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCc----------
Confidence 3 367788899999998865 4555677777666543 8999999999999999999999998876410
Q ss_pred HHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccC
Q 010532 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422 (508)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~ 422 (508)
..++.++ +++|.+++||+++++.+.+.+++.+++.+++.||+||+
T Consensus 322 ---------------------------~~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 366 (560)
T PRK08751 322 ---------------------------GFDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET 366 (560)
T ss_pred ---------------------------CcCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence 0111112 37899999999999999999999889999999999999
Q ss_pred CcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCc
Q 010532 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGC 501 (508)
Q Consensus 423 ~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD 501 (508)
++.+..+........+++|.|+++++++|+| +++..++. ++.|||+|+|+.++.||+++++.+.+.| .+|||+|||
T Consensus 367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 443 (560)
T PRK08751 367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAI--GEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443 (560)
T ss_pred CCceecccccccccCCCcCccCCCceEEEEC-CCCCCCCC--CCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence 8877655433333447899999999999999 77766554 5899999999999999999999999888 689999999
Q ss_pred ccccc
Q 010532 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|++.
T Consensus 444 ~~~~~ 448 (560)
T PRK08751 444 IARMD 448 (560)
T ss_pred eEEEc
Confidence 99874
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=444.55 Aligned_cols=375 Identities=19% Similarity=0.211 Sum_probs=307.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.++|.++++++||++|+++. + +.+||+||.++++++|+.|.+.|+++||+|+|++++++++++++||
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999864 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++.++++++|++......+... ..+. + ..+
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~~-~---------------------~~~ 580 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDLT-S---------------------LCY 580 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCce-e---------------------eec
Confidence 999999999999999999999999999999999988755443221 1111 1 111
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
++..... .........+++++|++|||||||.||||+++|+++.+.+.+....+ ++.++|+++...|++|..+
T Consensus 581 ~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 653 (1296)
T PRK10252 581 NAPLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS 653 (1296)
T ss_pred ccccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence 1111100 01111223678999999999999999999999999999988855544 7889999999999998888
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+........
T Consensus 654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~-------------------- 713 (1296)
T PRK10252 654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR-------------------- 713 (1296)
T ss_pred HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc--------------------
Confidence 8778889999999999763 8899999999999999999999998876532111000
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-----
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~----- 433 (508)
....++|.+++||+++++++.+.+++.+++.++|.||+||++..++......
T Consensus 714 -----------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 770 (1296)
T PRK10252 714 -----------------------QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA 770 (1296)
T ss_pred -----------------------ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence 0013789999999999999999999988999999999999987766544322
Q ss_pred -cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-cc------CceecCccccc
Q 010532 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD------GWFHTGCPHLF 505 (508)
Q Consensus 434 -~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~------gw~~TGD~g~~ 505 (508)
.....++|+|+++++++|+| ++++.++. |+.|||+|+|++++.||+|+|+.|.+.| .+ +||+|||+|++
T Consensus 771 ~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~--g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~ 847 (1296)
T PRK10252 771 VRGSSVPIGYPVWNTGLRILD-ARMRPVPP--GVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW 847 (1296)
T ss_pred cCCCCCCcccccCCCEEEEEC-CCCCCCCC--CCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence 12236799999999999999 77776655 4899999999999999999999999998 33 39999999987
Q ss_pred c
Q 010532 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
.
T Consensus 848 ~ 848 (1296)
T PRK10252 848 L 848 (1296)
T ss_pred c
Confidence 5
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=394.84 Aligned_cols=363 Identities=20% Similarity=0.277 Sum_probs=288.1
Q ss_pred HHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCee
Q 010532 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (508)
Q Consensus 51 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 130 (508)
+.++..+||++|+.+. ... +.+||.||.+++.++|..|.+.|+.+||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4567889999999763 222 579999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHccc
Q 010532 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (508)
Q Consensus 131 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (508)
+|+++.++.+++..+++.++++++|+++....... . ...++++.....
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~---------------------~~~~~~~~~~~~ 122 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------D---------------------VEDLAAFIASAD 122 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------c---------------------ccchhhhhhhcc
Confidence 99999999999999999999999999865322100 0 111222221111
Q ss_pred C-CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHH
Q 010532 211 N-KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEV 288 (508)
Q Consensus 211 ~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~ 288 (508)
. ..........+++++++|||||||.||+|.++|+++...+..+.... ....++++++.+|++|.+++.. +..
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~ 197 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP 197 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence 1 11112234568899999999999999999999999987776644332 5678899999999999999876 556
Q ss_pred HHHcCCEEEEecC-CHHHHHHHhh--hcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCC
Q 010532 289 FISNGAAIGFWRG-DVKLLLEDIG--ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (508)
Q Consensus 289 ~l~~G~~vv~~~~-~~~~~~~~i~--~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (508)
++..|+++++.+. ++..++..+. ++++|+++++|.++..+.+..
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~--------------------------------- 244 (488)
T PRK09088 198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP--------------------------------- 244 (488)
T ss_pred HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCc---------------------------------
Confidence 6899999988765 7888888886 489999999999998875410
Q ss_pred CcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCC--CcccCCccccc
Q 010532 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN--EMSMIGTVGPP 443 (508)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~--~~~~~~s~G~p 443 (508)
..+..++ +++|.+++||++++....+.+.+. |+++++.||+||++++....... ....++++|.|
T Consensus 245 ----~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~ 311 (488)
T PRK09088 245 ----GFDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP 311 (488)
T ss_pred ----CcCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence 0000011 379999999999999988877764 89999999999998755332211 12234789999
Q ss_pred ccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 444 ~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
+|+++++|+| +++..++ .|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++.
T Consensus 312 ~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~ 372 (488)
T PRK09088 312 TPTVQTRVVD-DQGNDCP--AGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRD 372 (488)
T ss_pred CCCcEEEEEC-CCCCCCc--CCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEc
Confidence 9999999999 7776554 45899999999999999999999998888 68999999999974
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=398.28 Aligned_cols=403 Identities=23% Similarity=0.366 Sum_probs=302.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
.+.+++.+++.+.++++||++|+++. + +.+||.||.+++.++|+.|.+.|+++||+|+++++|+.++++++
T Consensus 21 ~~~~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 91 (563)
T PRK06710 21 YDIQPLHKYVEQMASRYPEKKALHFL----G-----KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGY 91 (563)
T ss_pred CCcccHHHHHHHHHHHCCCceEEEec----C-----eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 35578999999999999999999864 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC-----hhh-HHHHhh
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK-----PEQ-REEIEK 194 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~-----~~~-~~~~~~ 194 (508)
|||+++|++++|++|..+.+++..+++.++++++++++.....+...... .....++...... ... ......
T Consensus 92 lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (563)
T PRK06710 92 YGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQK 169 (563)
T ss_pred HHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhc
Confidence 99999999999999999999999999999999999988765544332211 1122222211000 000 000000
Q ss_pred ----------cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccC
Q 010532 195 ----------YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK 264 (508)
Q Consensus 195 ----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~ 264 (508)
.......|+.+.... ...........+++++++|||||||.||+|.++|+++.......... ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~----~~~ 244 (563)
T PRK06710 170 KQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQW----LYN 244 (563)
T ss_pred ccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhh----ccC
Confidence 000000122221111 11111112245789999999999999999999999987554332111 112
Q ss_pred C-CCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccCh
Q 010532 265 L-TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341 (508)
Q Consensus 265 ~-~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~ 341 (508)
. ..++++++.+|++|.+++.. +..+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+..
T Consensus 245 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------- 315 (563)
T PRK06710 245 CKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP--------- 315 (563)
T ss_pred CCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCC---------
Confidence 2 34568899999999998865 5567899999998865 8999999999999999999999998876410
Q ss_pred hHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCccc
Q 010532 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421 (508)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE 421 (508)
.....++ +++|.+++||+++++++.+++++.+++.+++.||+||
T Consensus 316 ----------------------------~~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE 359 (563)
T PRK06710 316 ----------------------------LLKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE 359 (563)
T ss_pred ----------------------------ccccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEeccccccc
Confidence 0000111 2689999999999999999999989999999999999
Q ss_pred CCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCc
Q 010532 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGC 501 (508)
Q Consensus 422 ~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD 501 (508)
++.+...........++++|+|++++.++|++.+++..+ +.|+.|||+++|+.++.||+++++.+...|.+|||+|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD 437 (563)
T PRK06710 360 SSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEAL--PPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGD 437 (563)
T ss_pred CccccccCcccccccCCccCCCCCCCeEEEEECCCCccC--CCCCceEEEEecCccchhhhCChHHHhhhcccCcccccc
Confidence 987655443323333478999999999999984444434 455899999999999999999999999989999999999
Q ss_pred ccccc
Q 010532 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|++.
T Consensus 438 ~~~~~ 442 (563)
T PRK06710 438 VGYMD 442 (563)
T ss_pred eEEEc
Confidence 99874
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=394.85 Aligned_cols=403 Identities=21% Similarity=0.283 Sum_probs=307.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
+.++.++|+.+++++|+++|+.+. + +.+||.||.++++++|..|. +.|+++||+|+++++|++++++++|
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM----G-----EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC----C-----ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 568999999999999999999753 2 46999999999999999998 4899999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhh--HH---------
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQ--RE--------- 190 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~--~~--------- 190 (508)
||+++|++++|+++..+.+++.++++.+++++++++.+....+.+.... ...+.++......... ..
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999987654443332211 1222222211100000 00
Q ss_pred H----HhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCC
Q 010532 191 E----IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (508)
Q Consensus 191 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (508)
. .........++.+................++++++++|||||||.||+|.++|.++..++......+. .....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG--PLLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc--cccCC
Confidence 0 00000111222333322211111122346789999999999999999999999999887654332221 11134
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhH
Q 010532 267 SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (508)
Q Consensus 267 ~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (508)
..+.++..+|++|.+++.. .+..+..|+++++... ++..+++.++++++|.+.++|++++.+.+....
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--------- 319 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEF--------- 319 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCc---------
Confidence 4578889999999988765 5556888888777643 888999999999999999999999987642100
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCC
Q 010532 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423 (508)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~ 423 (508)
....+ +++|.+++||+++++.+.+.+++.+|+++++.||+||++
T Consensus 320 ----------------------------~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~ 363 (560)
T PRK08974 320 ----------------------------QELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS 363 (560)
T ss_pred ----------------------------ccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence 00011 379999999999999999999998899999999999999
Q ss_pred cceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCccc
Q 010532 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPH 503 (508)
Q Consensus 424 ~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g 503 (508)
.+++.+........+++|.|+|+++++|++ +++.+++. |+.|||+|+|+.++.||+++++.+...|.+|||+|||+|
T Consensus 364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 440 (560)
T PRK08974 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPP--GEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA 440 (560)
T ss_pred ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCCCC--CCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence 877766554434457899999999999999 77765554 589999999999999999999999988889999999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
++.
T Consensus 441 ~~~ 443 (560)
T PRK08974 441 VMD 443 (560)
T ss_pred EEc
Confidence 874
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=395.92 Aligned_cols=374 Identities=18% Similarity=0.180 Sum_probs=290.3
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCC-CCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV-EERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.|+.++|..++ .|+++|+++. + ..+||.||.++++++|..|.+.|+ .+||+|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~----~-----~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG----D-----RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 57888888764 6999999764 2 469999999999999999999999 8999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|++|.++.+++..+++.++++++|++++....+.+.. .+.++ ++.++.. .+
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence 9999999999999999999999999999999999887665544321 12333 2322211 13
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
.+++..... ..+.....++++++++|||||||.||+|.++|+++...+..+...+ ++..+|+++..+|++|.++
T Consensus 132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 205 (540)
T PRK13388 132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA 205 (540)
T ss_pred hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence 333321111 1112234679999999999999999999999999988777654444 6788999999999999988
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
+.. +..++..|+++++.+. ++..+++.+++++++++..+|..+..+.+...
T Consensus 206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~--------------------------- 258 (540)
T PRK13388 206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE--------------------------- 258 (540)
T ss_pred hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC---------------------------
Confidence 876 4456999999988875 89999999999999999999999887654100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~ 440 (508)
.... ...+++.+ + |+++++...+.+.+.+++++++.||+||++.++.... ....+++
T Consensus 259 ----------~~~~--------~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v 315 (540)
T PRK13388 259 ----------RPDD--------ADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI 315 (540)
T ss_pred ----------Cccc--------cccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence 0000 00256643 3 5667888888888888999999999999987665432 1234789
Q ss_pred cccccCeeEE-----------EeecCCCcccCCCCCCCceEEEe-cCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 441 GPPVPNVDVC-----------LESVPEMEYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~-----------Iv~~~~~~~~~~~~~~~Gel~v~-g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+|++|+++. ++| ++|.... ..++.|||+++ |++++.||+|+|+.+.+.|.+|||+|||+|+++
T Consensus 316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~-~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~ 391 (540)
T PRK13388 316 GRGAPGVAIYNPETLTECAVARFD-AHGALLN-ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRD 391 (540)
T ss_pred CCCCCCcEEEcCCCCccccceecc-Ccccccc-CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEc
Confidence 9999997653 223 2233222 23578999998 999999999999999999989999999999974
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=393.95 Aligned_cols=374 Identities=18% Similarity=0.192 Sum_probs=294.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.+.|.++++++||++|+.+. + ..+||.||.++++++|+.|++.|+++||+|+|+++|++++++++|
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4688999999999999999999753 2 369999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++..+++.++++++++++.....+.... . .++.++....
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~---~~~~~~~~~~--------------- 161 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD----D---AVAVIDPATA--------------- 161 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh----c---ceEEeccchh---------------
Confidence 99999999999999999999999999999999999887655443321 1 1222221100
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010532 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
.. .. ....+...++.++++|||||||.||+|.++|.... ....... ......+..+++++..+|++|.+
T Consensus 162 --~~-~~-----~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~--~~~~~~~~~~d~~~~~~pl~h~~ 230 (516)
T PRK13383 162 --GA-EE-----SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWVT--ILDRTRLRTGSRISVAMPMFHGL 230 (516)
T ss_pred --hh-hc-----CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHHh--HHhhhccCCCCeEEEecCCcchh
Confidence 00 00 00111234567899999999999999999997432 1111111 11223567889999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 282 DRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 282 g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
++...+.++..|+++++.+. ++..+++.+++++++.+.++|.++..+.+......
T Consensus 231 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------ 286 (516)
T PRK13383 231 GLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR------------------------ 286 (516)
T ss_pred hHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc------------------------
Confidence 99877778999999988765 99999999999999999999999988764211100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~ 440 (508)
.. ...+++|.+++||+++++++.+.+++.++..+++.||+||++..+...........+++
T Consensus 287 -----------~~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 347 (516)
T PRK13383 287 -----------AR--------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETV 347 (516)
T ss_pred -----------cc--------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcc
Confidence 00 00137999999999999999999999999999999999999876655443333345789
Q ss_pred cccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+|+++++++|+| +++.++ +.|+.|||+++|+.++.||++++. ..+.+|||+|||+|+++
T Consensus 348 G~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d 407 (516)
T PRK13383 348 GKPVAGCPVRILD-RNNRPV--GPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLD 407 (516)
T ss_pred cCCCCCcEEEEEC-CCCCCC--CCCCceEEEEecCcccccccCCch---hheecCceecceeEEEc
Confidence 9999999999999 777644 455899999999999999998764 23468999999999874
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=399.40 Aligned_cols=370 Identities=18% Similarity=0.243 Sum_probs=277.5
Q ss_pred CHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHH
Q 010532 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (508)
Q Consensus 45 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (508)
-+.+.|+++++++|+++|+++. + ++.++++||+||.++++++|+.|.++ ++||+|+|+++|++++++++|||+
T Consensus 3 ~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~ 75 (525)
T PRK05851 3 ELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW 75 (525)
T ss_pred hHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence 3899999999999999999765 3 23468899999999999999999987 799999999999999999999999
Q ss_pred hhCCeeeeccCCC--------ChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 125 ALGLHCVPLYDTL--------GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 125 ~~G~~~vpl~~~~--------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
++|+++++ ++.. ..+++..+++.++++++|++......+..... . +.+.+
T Consensus 76 ~~G~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------- 133 (525)
T PRK05851 76 LAGAAVSI-LPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------- 133 (525)
T ss_pred HcCCCCcC-CCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence 99998653 3321 23455667899999999998765544432211 0 00000
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCC-CCcEEEEec
Q 010532 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT-SEDVYVSYL 275 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 275 (508)
+....... .........++++++|+|||||||.||||+++|+++...+..+...+ ++. .+|++++.+
T Consensus 134 -----~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~ 201 (525)
T PRK05851 134 -----LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWL 201 (525)
T ss_pred -----cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcC
Confidence 00000000 00011224678999999999999999999999999999888755444 666 889999999
Q ss_pred ChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHH
Q 010532 276 PLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (508)
Q Consensus 276 p~~~~~g~~~~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
|++|.+++..++.+++.|+++++.+. ++..+++.+++++++++...|.++..+.+. ....
T Consensus 202 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~-~~~~-------------- 266 (525)
T PRK05851 202 PLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKY-ARRV-------------- 266 (525)
T ss_pred CCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHh-hccc--------------
Confidence 99999999877788999999999762 578899999999999875544444433221 0000
Q ss_pred HHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHH---hCC---ceEeccCcccCCc
Q 010532 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV---ACA---HVLQGYGLTETCA 424 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~~~ 424 (508)
...++ +++|.+++||+++++++.+.|.+. +|. .+++.||+||++.
T Consensus 267 ---------------------~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 317 (525)
T PRK05851 267 ---------------------SDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC 317 (525)
T ss_pred ---------------------cCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence 00011 378999999999999998888764 454 4999999999987
Q ss_pred ceeccCCCC--------------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhh
Q 010532 425 GTFVSLPNE--------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490 (508)
Q Consensus 425 ~~~~~~~~~--------------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~ 490 (508)
.+....+.. ....+++|+|++|++++|+| +++.. +++.|+.|||+|+|++++.|||++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~-~~~~g~~GEl~v~g~~~~~GY~~~~~~~-- 393 (525)
T PRK05851 318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGAA-GVAGREIGEIEIRGASMMSGYLGQAPID-- 393 (525)
T ss_pred EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCCc-cCCCCCeEEEEEecCchhhccccCCccC--
Confidence 665433211 11236899999999999998 65542 2345689999999999999999998643
Q ss_pred hcccCceecCccccc
Q 010532 491 VMVDGWFHTGCPHLF 505 (508)
Q Consensus 491 ~f~~gw~~TGD~g~~ 505 (508)
.+|||+|||+|++
T Consensus 394 --~~~~~~TGDl~~~ 406 (525)
T PRK05851 394 --PDDWFPTGDLGYL 406 (525)
T ss_pred --CCCceeccceEEE
Confidence 4799999999976
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=397.90 Aligned_cols=404 Identities=19% Similarity=0.251 Sum_probs=306.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
...+++.++|+++++.+||++|+.+. + +.+||.||.+++.++|..|.+.|+++||+|+++++|++++++++
T Consensus 30 ~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 100 (567)
T PRK06178 30 HGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVF 100 (567)
T ss_pred cCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHH
Confidence 34468999999999999999999764 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhH-HHHhhc---C
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR-EEIEKY---G 196 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~-~~~~~~---~ 196 (508)
+||+++|++++|++|..+..++.++++.++++++++++...+.+.+..... .++.++.......... ...... .
T Consensus 101 lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T PRK06178 101 FGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLR 178 (567)
T ss_pred HHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccccccc
Confidence 999999999999999999999999999999999999998777665544322 3344444321110000 000000 0
Q ss_pred ---cEEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEE
Q 010532 197 ---LAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271 (508)
Q Consensus 197 ---~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
.....+.++...... .........++++++++|||||||.||+|.+||+++.......... ...+...+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~----~~~~~~~d~~ 254 (567)
T PRK06178 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAV----AVVGGEDSVF 254 (567)
T ss_pred cccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHH----hccCCCCcEE
Confidence 000112222222111 1111233567899999999999999999999999998766553221 1356788999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010532 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 272 l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
+..+|++|.+|+.. ++.+++.|+++++.+. ++..++..+++++++.+..+|..+..+.+...
T Consensus 255 l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~---------------- 318 (567)
T PRK06178 255 LSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR---------------- 318 (567)
T ss_pred EEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC----------------
Confidence 99999999999865 6667999999999886 99999999999999999999998887654100
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEE--EcCCCCCHHHHHHHHHHhCCceEe-ccCcccCCcce
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL--SGAAPLTPHVETFLRVVACAHVLQ-GYGLTETCAGT 426 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~~~~~~~~~~~~~v~~-~yG~tE~~~~~ 426 (508)
....++ ++++.+. ++++++++++.+.+++.+|..++. .||+||++..+
T Consensus 319 ---------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~ 369 (567)
T PRK06178 319 ---------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD 369 (567)
T ss_pred ---------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence 000111 2455544 456999999999999988877665 79999998765
Q ss_pred eccCCCC------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecC
Q 010532 427 FVSLPNE------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500 (508)
Q Consensus 427 ~~~~~~~------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TG 500 (508)
....... ...++++|+|+||++++|+|.+++..++ .|+.|||+|+|++++.||+++++.+...|.||||+||
T Consensus 370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~--~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TG 447 (567)
T PRK06178 370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLP--LGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG 447 (567)
T ss_pred eeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCC--CCCceEEEEECCcccccccCChhhhhhcccCCceeec
Confidence 4432111 1234679999999999999844454444 4589999999999999999999999988889999999
Q ss_pred cccccc
Q 010532 501 CPHLFL 506 (508)
Q Consensus 501 D~g~~~ 506 (508)
|+|++.
T Consensus 448 Dl~~~~ 453 (567)
T PRK06178 448 DIGKID 453 (567)
T ss_pred ceEEEe
Confidence 999874
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=389.69 Aligned_cols=374 Identities=20% Similarity=0.235 Sum_probs=292.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCchhHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
...++.++|++++. +|++++++. + +++||.||.+++.++|++|+++ |++++++|+++++|++++++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 34679999988875 788998754 2 5799999999999999999987 8999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
+||+++|++++|+++..+.+++..+++.++++++|+++.....+.+.. ..+ .++..+. .
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~ 130 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P 130 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence 999999999999999999999999999999999999987665443321 112 2222211 1
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
.+++++..............++++++++|||||||.||+|+++|+++......+...+ ++...|+++..+|++|.
T Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~ 205 (529)
T PRK07867 131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS 205 (529)
T ss_pred cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence 2444443322222223345678999999999999999999999999988777754443 67788999999999999
Q ss_pred HHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 281 ~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+++.. +..++..|+++++.+. ++..+++.++++++|++..+|+.+..++.....
T Consensus 206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~------------------------ 261 (529)
T PRK07867 206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER------------------------ 261 (529)
T ss_pred HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc------------------------
Confidence 98876 5567999999988765 899999999999999999999998876541100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCC
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (508)
. + ...+++| +++||+.+++.+ +.+.+.+|+++++.||+||+++.+..... ...+
T Consensus 262 ---------~---~---------~~~~~lr-~~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~ 315 (529)
T PRK07867 262 ---------P---D---------DADNPLR-IVYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG 315 (529)
T ss_pred ---------c---c---------ccccceE-EEecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence 0 0 0002677 456888888765 55666789999999999999866543221 2347
Q ss_pred cccccccCeeEEEeecCCCcccCCCCCC------------CceEEE-ecCcccccccCChhhhhhhcccCceecCccccc
Q 010532 439 TVGPPVPNVDVCLESVPEMEYDALSSTP------------RGEVCV-KGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLF 505 (508)
Q Consensus 439 s~G~p~~~~~v~Iv~~~~~~~~~~~~~~------------~Gel~v-~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~ 505 (508)
++|.|+++ ++|++.+.+..++. ++ .|||++ +|++++.||+|+++.+.+.|.+|||+|||+|++
T Consensus 316 ~~g~~~~~--~~i~~~~~~~~~~~--g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~ 391 (529)
T PRK07867 316 ALGPLPPG--VAIVDPDTGTECPP--AEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR 391 (529)
T ss_pred CcCCCCCC--EEEEECCCCCCCCC--CccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence 89999999 67777334444443 35 899999 999999999999999999999999999999987
Q ss_pred c
Q 010532 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
.
T Consensus 392 ~ 392 (529)
T PRK07867 392 D 392 (529)
T ss_pred e
Confidence 4
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=391.31 Aligned_cols=372 Identities=18% Similarity=0.224 Sum_probs=298.8
Q ss_pred CHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHH
Q 010532 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (508)
Q Consensus 45 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (508)
++.+.|++.++.+|+++|+... + +.+||+||.+++.++|..|.+.|+++||+|+|+++|+.++++++|||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5789999999999999998754 2 479999999999999999999999999999999999999999999999
Q ss_pred hhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHH
Q 010532 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (508)
Q Consensus 125 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (508)
++|++++|+++.++.+++..+++..+++.++++.+....... .. ++.+.. ..+
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence 999999999999999999999999999999998764322211 11 121111 111
Q ss_pred HHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHH
Q 010532 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (508)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~ 284 (508)
+...... ........++++++++|||||||.||+|.++|+++...+.+.... .....+++++...|++|..++.
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~~~~~~~~ 198 (502)
T TIGR01734 125 AETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLAD-----FPLSEGKQFLNQAPFSFDLSVM 198 (502)
T ss_pred hhhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHh-----CCCCCCceEEeecCceechhHH
Confidence 1111111 111123467889999999999999999999999999888775443 3677889999999999998888
Q ss_pred HHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 285 IEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 285 ~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
.++.++..|+++++.+. ++..+++.+++++++.+.++|.++..+......
T Consensus 199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~-------------------------- 252 (502)
T TIGR01734 199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF-------------------------- 252 (502)
T ss_pred HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence 78888999999998864 789999999999999999999998776431100
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCC----Ccc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN----EMS 435 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~----~~~ 435 (508)
.. ...++++.++++|+++++++.+.+.+.+ ++.+++.||+||+++.+...... ...
T Consensus 253 -----------~~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01734 253 -----------NQ--------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY 313 (502)
T ss_pred -----------cc--------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence 00 0114789999999999999999998887 78999999999997644432211 112
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc--c--CceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~--~--gw~~TGD~g~~~ 506 (508)
...++|.|+++++++|++ +++..++. |+.|||+|+|+.++.||+++++.+.+.|. + +||+|||+|++.
T Consensus 314 ~~~~vg~~~~~~~~~i~~-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~ 385 (502)
T TIGR01734 314 PRLPIGFAKPDMNLFIMD-EEGEPLPE--GEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT 385 (502)
T ss_pred CccccccccCCCEEEEEC-CCCCCCCC--CCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEE
Confidence 235799999999999999 77765554 58999999999999999999999988772 3 599999999975
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=471.55 Aligned_cols=377 Identities=18% Similarity=0.209 Sum_probs=307.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....++.+.|.++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 2000 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~ 2070 (5163)
T PRK12316 2000 PRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVAL 2070 (5163)
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44568999999999999999999865 3 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|||+++|++++|++|.++.+++..+++++++++++++......+... ..+. .+.+...
T Consensus 2071 lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~---------------- 2128 (5163)
T PRK12316 2071 LAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD---------------- 2128 (5163)
T ss_pred HHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch----------------
Confidence 99999999999999999999999999999999999988654432111 1111 1111110
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
..+.... ...+.....+++++||+|||||||.||||+++|+++.+.+......+ ++.++++++...|++|.
T Consensus 2129 --~~~~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 2199 (5163)
T PRK12316 2129 --AEWADYP--DTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFD 2199 (5163)
T ss_pred --hhhhccC--ccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHH
Confidence 0000000 11122345789999999999999999999999999999998865544 78899999999999998
Q ss_pred HHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
.++..++.+|+.|+++++.+. ++..+++.|+++++|+++.+|++++.+.+......
T Consensus 2200 ~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------- 2258 (5163)
T PRK12316 2200 GAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG--------------------- 2258 (5163)
T ss_pred HHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc---------------------
Confidence 887778889999999977653 78999999999999999999999998865221100
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCcc-
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMS- 435 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~- 435 (508)
...++|.+++|||++++++.+.|.+.+ +..++|.||+||++..++........
T Consensus 2259 -------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 2313 (5163)
T PRK12316 2259 -------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDP 2313 (5163)
T ss_pred -------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccc
Confidence 012799999999999999999998766 57899999999998776544332211
Q ss_pred ---cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c-------cCceecCcccc
Q 010532 436 ---MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-------DGWFHTGCPHL 504 (508)
Q Consensus 436 ---~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~-------~gw~~TGD~g~ 504 (508)
...++|+|+++++++|+| ++++.+|. |+.|||+|+|++++.||+|+|+.|.++| . ++||+|||+|+
T Consensus 2314 ~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~--g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~ 2390 (5163)
T PRK12316 2314 CGAAYVPIGRALGNRRAYILD-ADLNLLAP--GMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLAR 2390 (5163)
T ss_pred cCCCcCCcccccCCCEEEEEC-CCCCCCCC--CCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEE
Confidence 125799999999999999 77766554 5899999999999999999999999998 2 24999999999
Q ss_pred cc
Q 010532 505 FL 506 (508)
Q Consensus 505 ~~ 506 (508)
+.
T Consensus 2391 ~~ 2392 (5163)
T PRK12316 2391 YR 2392 (5163)
T ss_pred Ec
Confidence 85
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=397.59 Aligned_cols=392 Identities=17% Similarity=0.248 Sum_probs=299.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc
Q 010532 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (508)
Q Consensus 34 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~ 113 (508)
.++|....+++++.++|+.+++++|+.+++ + ..++..+.+||.||.+++.++|++|++.|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~ 84 (579)
T PRK09192 11 SSLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD 84 (579)
T ss_pred ccccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 467778899999999999999998765543 3 2333457899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCeeeeccCCCC-------hHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCCh
Q 010532 114 PEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP 186 (508)
Q Consensus 114 ~~~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~ 186 (508)
+++++++|||+++|++++|+++.++ .+++..+++.++++++|+++.....+.+..... ..++
T Consensus 85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~----~~~~------- 153 (579)
T PRK09192 85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN----PLLH------- 153 (579)
T ss_pred hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc----cccc-------
Confidence 9999999999999999999986543 589999999999999999987665554432111 1111
Q ss_pred hhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCC
Q 010532 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (508)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (508)
...++++..... .....+...++++++++|||||||.||+|.++|+++...+..+.. ...++.
T Consensus 154 ------------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~ 216 (579)
T PRK09192 154 ------------VLSHAWFKALPE-ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISH----DGLKVR 216 (579)
T ss_pred ------------eeehhhhcccCC-CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHh----hcccCC
Confidence 122333322221 111223346789999999999999999999999999988876543 134678
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccC
Q 010532 267 SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (508)
Q Consensus 267 ~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~ 340 (508)
++|+++.++|++|.+++.. ++.++..|+++++.+. ++..+++.+.+++++.++..|.++..+.......
T Consensus 217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----- 291 (579)
T PRK09192 217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----- 291 (579)
T ss_pred CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-----
Confidence 8999999999999998876 5556889999877652 6889999999999997776655555443211000
Q ss_pred hhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC------CceE
Q 010532 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVL 414 (508)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~ 414 (508)
.....++ +++|.+++||+++++.+.+.+.+.++ ..++
T Consensus 292 -----------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~ 334 (579)
T PRK09192 292 -----------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM 334 (579)
T ss_pred -----------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence 0000112 37899999999999999999888763 3599
Q ss_pred eccCcccCCcceeccCCCCc---------------------------ccCCcccccccCeeEEEeecCCCcccCCCCCCC
Q 010532 415 QGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPR 467 (508)
Q Consensus 415 ~~yG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~ 467 (508)
+.||+||+++.++....... ...+++|+|+|+++++|+| +++..++. ++.
T Consensus 335 ~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~--g~~ 411 (579)
T PRK09192 335 PSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPE--RVV 411 (579)
T ss_pred cccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCC--CCE
Confidence 99999999876654332110 0124789999999999999 77765554 489
Q ss_pred ceEEEecCcccccccCChhhhhhhc-ccCceecCccccc
Q 010532 468 GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLF 505 (508)
Q Consensus 468 Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~ 505 (508)
|||+++|++++.||+++ +.+.+.| .+|||+|||+|++
T Consensus 412 Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~ 449 (579)
T PRK09192 412 GHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL 449 (579)
T ss_pred EEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE
Confidence 99999999999999999 5666666 7999999999975
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=461.22 Aligned_cols=378 Identities=19% Similarity=0.199 Sum_probs=308.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....++.++|+++++++||++|+++. + +.+||+||.++++++|+.|.+.|+++|++|++++++++++++++
T Consensus 1571 ~~~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~ 1641 (3956)
T PRK12467 1571 PLARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGL 1641 (3956)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHH
Confidence 34468999999999999999999864 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|||+++|++++|++|.++.+++..++++++++++|++......+... ... .++.++...
T Consensus 1642 lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~--------------- 1700 (3956)
T PRK12467 1642 LAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED--------------- 1700 (3956)
T ss_pred HHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc---------------
Confidence 99999999999999999999999999999999999987654332111 111 222222111
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
++.... ....+.....+++++||+|||||||.||||+++|+++.+.+.+....+ ++..+++++...|++|.
T Consensus 1701 ---~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 1771 (3956)
T PRK12467 1701 ---DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFD 1771 (3956)
T ss_pred ---chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHH
Confidence 111111 111122344678999999999999999999999999999988855544 78889999999999998
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.++..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+.+.....
T Consensus 1772 ~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--------------------- 1830 (3956)
T PRK12467 1772 VSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQV--------------------- 1830 (3956)
T ss_pred HHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcccc---------------------
Confidence 888778889999999999863 7899999999999999999999999886521000
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCC---
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN--- 432 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~--- 432 (508)
...+++|.+++|||++++++.+.|.+.+ +..++|.||+||++..++.....
T Consensus 1831 -------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~ 1885 (3956)
T PRK12467 1831 -------------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKD 1885 (3956)
T ss_pred -------------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccc
Confidence 0013799999999999999999888776 47899999999998776654332
Q ss_pred -CcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c-------cCceecCccc
Q 010532 433 -EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-------DGWFHTGCPH 503 (508)
Q Consensus 433 -~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~-------~gw~~TGD~g 503 (508)
......++|+|+++++++|+| ++++.+|. |+.|||+|+|++++.||+|+|+.|.++| . ++||+|||+|
T Consensus 1886 ~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~--G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~ 1962 (3956)
T PRK12467 1886 LEGRDSVPIGQPIANLSTYILD-ASLNPVPI--GVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLA 1962 (3956)
T ss_pred cccCCCCCcccccCCCEEEEEC-CCCCCCCC--CCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceE
Confidence 112236899999999999999 77776655 4899999999999999999999999998 2 2499999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
++.
T Consensus 1963 ~~~ 1965 (3956)
T PRK12467 1963 RYR 1965 (3956)
T ss_pred EEC
Confidence 874
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=385.54 Aligned_cols=380 Identities=17% Similarity=0.178 Sum_probs=286.7
Q ss_pred HHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeee
Q 010532 52 MAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV 131 (508)
Q Consensus 52 ~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 131 (508)
.+++++||++|+++. ++. +.+||+||.++++++|+.|.+.|+.+||+|+++++|++++++++|||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 456789999999864 322 5799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccC
Q 010532 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN 211 (508)
Q Consensus 132 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (508)
|+++.++.+++..+++.+++++++++........... ......+.+..... ....+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVG----ADLPLRLSFGGEID-----------GFGSFEAALAGAG- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhh----hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence 9999999999999999999999999875433222211 11111222221100 1123333322110
Q ss_pred CCCCCCCCCCCCeEEEEeccCCCCCcceEEe--ehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHH
Q 010532 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMV--SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF 289 (508)
Q Consensus 212 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~--sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 289 (508)
......+++++++|||||||.||+|.+ +|.++......+... ......+..+++++..+|++|.+++......
T Consensus 142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~ 216 (501)
T PRK13390 142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAI-ARAFYDISESDIYYSSAPIYHAAPLRWCSMV 216 (501)
T ss_pred ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhh-HHHHhCCCCCCeEEecccchhhhHHHHHHHH
Confidence 011122357999999999999999996 455554322111000 1112357788999999999999888665556
Q ss_pred HHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcc
Q 010532 290 ISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368 (508)
Q Consensus 290 l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (508)
+..|+++++.+. ++..+++.|+++++|++.++|+++..+.+......
T Consensus 217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------- 264 (501)
T PRK13390 217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR-------------------------------- 264 (501)
T ss_pred HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc--------------------------------
Confidence 778999988775 89999999999999999999999988764210000
Q ss_pred hhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCee
Q 010532 369 PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVD 448 (508)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~ 448 (508)
...++ +++|.+++||+++++++.+.+++.++..+++.||+||+++++...........+++|+|+++ .
T Consensus 265 ---~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~ 332 (501)
T PRK13390 265 ---TRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-D 332 (501)
T ss_pred ---ccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-e
Confidence 00001 37899999999999999999999889999999999999876554333222334789999999 6
Q ss_pred EEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc---cCceecCcccccc
Q 010532 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV---DGWFHTGCPHLFL 506 (508)
Q Consensus 449 v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~---~gw~~TGD~g~~~ 506 (508)
++|+| +++..+ +.|+.|||+|+|++++.||+++++.+.+.|. +||++|||+|++.
T Consensus 333 ~~i~d-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~ 390 (501)
T PRK13390 333 LHICD-DDGNEL--PAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVD 390 (501)
T ss_pred EEEEC-CCCCCC--CCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEEC
Confidence 99998 777654 4569999999999999999999999998872 6899999999974
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=383.90 Aligned_cols=371 Identities=19% Similarity=0.193 Sum_probs=300.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
++++.++|++++..+||++++... + +++||.||.+++.++|..|.+.|+.+||+|+++++|+.++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a 71 (503)
T PRK04813 1 IMDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG 71 (503)
T ss_pred CchHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 367899999999999999998754 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++..+++..++++++++++... .. ..+ ..+.+
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~----------------------~~~~~ 121 (503)
T PRK04813 72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL-----EI---LGI----------------------PVITL 121 (503)
T ss_pred HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc-----cc---cCC----------------------cEEeh
Confidence 9999999999999999999999999999999999876410 00 011 11222
Q ss_pred HHHHHcc--cCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 203 DEFLQLG--ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 203 ~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
+++.... ...........++++++++|||||||.||+|.++|+++...+...... ..+..+++++...|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLED-----FALPEGPQFLNQAPYSFD 196 (503)
T ss_pred HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHH-----cCCCcCceeeecCCcchh
Confidence 2222211 011111223467889999999999999999999999999888775443 367888999999999998
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.++..++.++..|+++++.+. ++..+++.+++++++.+..+|++++.+......
T Consensus 197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~---------------------- 254 (503)
T PRK04813 197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSF---------------------- 254 (503)
T ss_pred HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhcc----------------------
Confidence 888777788999999998874 789999999999999999999998875432100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC--
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (508)
.....+++|.++++|+++++.+.+.+.+.+ ++.+++.||+||++..++......
T Consensus 255 -----------------------~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~ 311 (503)
T PRK04813 255 -----------------------NEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM 311 (503)
T ss_pred -----------------------CcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence 001114799999999999999999999988 788999999999976554322211
Q ss_pred --cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc--ccC--ceecCccccc
Q 010532 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGCPHLF 505 (508)
Q Consensus 434 --~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f--~~g--w~~TGD~g~~ 505 (508)
.....++|+|.++++++|++ +++..++. |+.|||+|+|+.++.||+++++.+...| .+| ||+|||+|++
T Consensus 312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~ 386 (503)
T PRK04813 312 LDQYKRLPIGYAKPDSPLLIID-EEGTKLPD--GEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL 386 (503)
T ss_pred cccCCCCcccccCCCCEEEEEC-CCCCCCCC--CCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe
Confidence 12235799999999999999 77766554 5899999999999999999999998887 244 9999999986
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=463.38 Aligned_cols=380 Identities=18% Similarity=0.168 Sum_probs=310.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
+...++.+.+.++++++||++|+++. +. .+||+||.++++++|+.|.+.|+++|++|+|++++++++++++
T Consensus 3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691 3717 PLEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred ccccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44579999999999999999999875 43 5999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCC-CCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
|||+++|++++|++|.++.+++..++++++++++|++............... .....++..
T Consensus 3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 3849 (4334)
T PRK05691 3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVW------------------ 3849 (4334)
T ss_pred HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeee------------------
Confidence 9999999999999999999999999999999999999876543322221110 011111111
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
++..........+.....+++++||+|||||||.||||+++|+++.+.+.+....+ ++++.++++...++.+
T Consensus 3850 ---~~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~f 3921 (4334)
T PRK05691 3850 ---EEVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSF 3921 (4334)
T ss_pred ---cccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCch
Confidence 11111111111122345789999999999999999999999999999988855544 7899999999999998
Q ss_pred HHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
..+....+.++..|+++++.+. ++..+++.++++++|++..+|+++..+......
T Consensus 3922 d~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~--------------------- 3980 (4334)
T PRK05691 3922 DISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ--------------------- 3980 (4334)
T ss_pred hHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc---------------------
Confidence 8888888899999999999864 788999999999999999999999887542100
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM 434 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (508)
..++||.+++|||++++++.+.|.+.+ ++.++|.||+|||+..++.......
T Consensus 3981 ---------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~ 4033 (4334)
T PRK05691 3981 ---------------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLA 4033 (4334)
T ss_pred ---------------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccc
Confidence 013799999999999999999887765 7899999999999987765443221
Q ss_pred ---ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c-------cCceecCccc
Q 010532 435 ---SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-------DGWFHTGCPH 503 (508)
Q Consensus 435 ---~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~-------~gw~~TGD~g 503 (508)
.....+|+|++++++.|+| +.+..+|.| ..|||+|+|++++.||+|+|+.|.++| . ++||||||+|
T Consensus 4034 ~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~ 4110 (4334)
T PRK05691 4034 STRGSYLPIGSPTDNNRLYLLD-EALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLA 4110 (4334)
T ss_pred cccCCcCCCCCccCCCEEEEEC-CCCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcce
Confidence 1224699999999999999 777766655 899999999999999999999999999 2 3699999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
++.
T Consensus 4111 ~~~ 4113 (4334)
T PRK05691 4111 RRR 4113 (4334)
T ss_pred eec
Confidence 985
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=392.81 Aligned_cols=389 Identities=18% Similarity=0.213 Sum_probs=297.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
+....|+.+.|++.++++||++|+++. + +++||+||.++++++|..|.+.|+++||+|+++++|+++++++
T Consensus 33 ~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~ 103 (600)
T PRK08279 33 PDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAA 103 (600)
T ss_pred CCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence 356779999999999999999999864 2 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|+++.++.+++..+++.++++++|++.+....+.+..... .....++..++.... ..
T Consensus 104 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~ 172 (600)
T PRK08279 104 WLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DP 172 (600)
T ss_pred HHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------cc
Confidence 9999999999999999999999999999999999999988766655443322 222233333221100 01
Q ss_pred eeHHHHHHcccCC----CCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEec
Q 010532 200 YSWDEFLQLGENK----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (508)
Q Consensus 200 ~~~~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 275 (508)
..+.++....... .........+++++|+|||||||.||+|.++|+++...+..+...+ .+.++|+++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~ 247 (600)
T PRK08279 173 EGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCL 247 (600)
T ss_pred ccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEec
Confidence 1233333221111 1112234568999999999999999999999999999988855543 788999999999
Q ss_pred ChHHHHHHHHH-HHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 276 PLAHIFDRAIE-EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 276 p~~~~~g~~~~-~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
|++|.+++... ..++..|+++++.+. ++..+++.++++++|++..+|++++.+.+......
T Consensus 248 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~----------------- 310 (600)
T PRK08279 248 PLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT----------------- 310 (600)
T ss_pred CchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc-----------------
Confidence 99999998764 455889999988876 89999999999999999999999988764210000
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceEeccCcccCCcceeccCCC
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPN 432 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~ 432 (508)
. ...+++.+ +|+.+++++.+.+.+.++. .+++.||+||++..+...
T Consensus 311 --------------------~--------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--- 357 (600)
T PRK08279 311 --------------------D--------RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV--- 357 (600)
T ss_pred --------------------c--------cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---
Confidence 0 00256654 4777999999999998886 599999999998644321
Q ss_pred CcccCCccccccc----CeeE---------EEeecCCCcccCCCCCCCceEE--EecCcccccccCChhhhhhhc-c---
Q 010532 433 EMSMIGTVGPPVP----NVDV---------CLESVPEMEYDALSSTPRGEVC--VKGSTVFSGYYKREDLTKEVM-V--- 493 (508)
Q Consensus 433 ~~~~~~s~G~p~~----~~~v---------~Iv~~~~~~~~~~~~~~~Gel~--v~g~~v~~gY~~~~~~~~~~f-~--- 493 (508)
....+++|.+.+ +..+ .|.+ .++...+++.|+.|||+ |+|++++.|| ++++.+.+.| .
T Consensus 358 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~ 434 (600)
T PRK08279 358 -FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVF 434 (600)
T ss_pred -CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhccc
Confidence 123367777655 3322 2333 33333455677899998 7899999999 8898887776 2
Q ss_pred ---cCceecCcccccc
Q 010532 494 ---DGWFHTGCPHLFL 506 (508)
Q Consensus 494 ---~gw~~TGD~g~~~ 506 (508)
++||+|||+|++.
T Consensus 435 ~~~~~~~~TGDlg~~~ 450 (600)
T PRK08279 435 KKGDAWFNTGDLMRDD 450 (600)
T ss_pred CCCCceEeecceEEEc
Confidence 5899999999875
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=380.69 Aligned_cols=348 Identities=23% Similarity=0.288 Sum_probs=282.0
Q ss_pred HhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeecc
Q 010532 55 ERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY 134 (508)
Q Consensus 55 ~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 134 (508)
+..++++|+++. + +++||.||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++
T Consensus 11 ~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 76 (471)
T PRK07787 11 AAADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVP 76 (471)
T ss_pred cccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 346788888753 2 57999999999999999985 579999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCC
Q 010532 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQF 214 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (508)
+..+.+++..+++.+++++++++..... ..+........ ...+ .
T Consensus 77 ~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~-----------~ 120 (471)
T PRK07787 77 PDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSW-----------H 120 (471)
T ss_pred CCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------cccc-----------c
Confidence 9999999999999999999999863110 01111000000 0000 0
Q ss_pred CCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcC
Q 010532 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNG 293 (508)
Q Consensus 215 ~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G 293 (508)
......++++++++|||||||.||+|.++|+++...+..+...+ .+..++++++.+|++|.+|+.. .+.++..|
T Consensus 121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G 195 (471)
T PRK07787 121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG 195 (471)
T ss_pred cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence 11224578999999999999999999999999999887754443 6778899999999999999886 66779999
Q ss_pred CEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhH
Q 010532 294 AAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372 (508)
Q Consensus 294 ~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
+++++.+. ++..+++.|+ ++++++.++|.++..+.+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~------------------------------------- 237 (471)
T PRK07787 196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA------------------------------------- 237 (471)
T ss_pred CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc-------------------------------------
Confidence 99998875 9999999999 99999999999998876511000
Q ss_pred HHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEe
Q 010532 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452 (508)
Q Consensus 373 ~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv 452 (508)
....++|.+++||+++++.+.+.+++.++..+++.||+||++..++..... ...++++|+|++|++++|+
T Consensus 238 ---------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~vG~~~~g~~~~i~ 307 (471)
T PRK07787 238 ---------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADG-ERRPGWVGLPLAGVETRLV 307 (471)
T ss_pred ---------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCC-cccCCcccccCCCcEEEEE
Confidence 001378999999999999999999998999999999999998755444332 2334789999999999999
Q ss_pred ecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
| +++.+++.+.++.|||+++|++++.||+++++.+.+.| .+|||+|||+|++.
T Consensus 308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~ 361 (471)
T PRK07787 308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD 361 (471)
T ss_pred C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEc
Confidence 9 77776654333489999999999999999999999999 58999999999874
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=464.41 Aligned_cols=376 Identities=18% Similarity=0.188 Sum_probs=307.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|
T Consensus 509 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~l 579 (5163)
T PRK12316 509 LQRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALL 579 (5163)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3568999999999999999999864 2 479999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|++|.++.+++..++++++++++|++......+... ... .++.++...
T Consensus 580 a~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 637 (5163)
T PRK12316 580 AILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA-----AGV-QVLDLDRPA---------------- 637 (5163)
T ss_pred HHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc-----cCc-eEEEecCcc----------------
Confidence 9999999999999999999999999999999999987654332110 111 223222111
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010532 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
.+.... ..........++++++|+|||||||.||||+++|+++.+.+.++...+ ++..+++++..+|++|..
T Consensus 638 --~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~ 709 (5163)
T PRK12316 638 --AWLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDV 709 (5163)
T ss_pred --hhhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHH
Confidence 001111 111122344678999999999999999999999999999998865544 788899999999999999
Q ss_pred HHHHHHHHHHcCCEEEEec----CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 282 DRAIEEVFISNGAAIGFWR----GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 282 g~~~~~~~l~~G~~vv~~~----~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
++...+.+|+.|+++++.+ .++..+++.|+++++|++.++|++++.+.+....
T Consensus 710 ~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------- 766 (5163)
T PRK12316 710 SVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV----------------------- 766 (5163)
T ss_pred HHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc-----------------------
Confidence 9888889999999999985 3899999999999999999999999987641100
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCC-CCcc
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLP-NEMS 435 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~-~~~~ 435 (508)
...+++|.+++||+++++++.+.+.+.+ +++++|.||+||++..++.... ....
T Consensus 767 ------------------------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 822 (5163)
T PRK12316 767 ------------------------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGG 822 (5163)
T ss_pred ------------------------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccC
Confidence 0013799999999999999999887665 6899999999999865543332 2222
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c------cCceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~------~gw~~TGD~g~~~ 506 (508)
...++|+|++|++++|+| +++..+|. |+.|||+|+|++++.||+|+|+.|.++| . ++||+|||+|++.
T Consensus 823 ~~~~iG~p~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~ 897 (5163)
T PRK12316 823 DSVPIGRPIANLACYILD-ANLEPVPV--GVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYR 897 (5163)
T ss_pred CCCCCccccCCCEEEEEC-CCCCCCCC--CCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEEC
Confidence 346899999999999999 77766554 5899999999999999999999999988 2 3499999999875
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=399.35 Aligned_cols=428 Identities=18% Similarity=0.232 Sum_probs=335.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
++.+|+.++|++.++++|+++|+... . ..+.++++||+|+.+++.++|++|.++|+++||+|+|+++|+++|+++.
T Consensus 424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~ 499 (1452)
T PTZ00297 424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE 499 (1452)
T ss_pred ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 55679999999999999999998642 1 1233578999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhH-HHHhhcCcEE
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR-EEIEKYGLAV 199 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~-~~~~~~~~~~ 199 (508)
+||+++|+++||+++ +.+++..++++++++++|++.+....+.+... ..++.+|++++...... ......+...
T Consensus 500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~ 574 (1452)
T PTZ00297 500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL 574 (1452)
T ss_pred HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence 999999999999975 46799999999999999999887777665432 47889999864211000 0000112347
Q ss_pred eeHHHHHHcccCCCCC-CCCCCCCCeEEEEe---ccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEec
Q 010532 200 YSWDEFLQLGENKQFD-LPVKKKNDICTIMY---TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~-~~~~~~~~~a~i~~---TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 275 (508)
++|++++..+.....+ .+...++|++.|+| ||||||.||||++||+|++..+..+.... ......++|++++++
T Consensus 575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~~Ls~L 652 (1452)
T PTZ00297 575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHLMVHFT 652 (1452)
T ss_pred eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCEEEEec
Confidence 7899998876422211 22346788999986 99999999999999999999988754311 111345789999999
Q ss_pred ChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 276 PLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 276 p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|++|+++....+.+++.|+++.. +++..+++.|++++||+++++|.+++++.+.+..+....+.++.++++++.+++.
T Consensus 653 PLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~ 730 (1452)
T PTZ00297 653 PFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS 730 (1452)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999997777778999999864 3789999999999999999999999999998888888778899999999999887
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCC--CCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA--PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
..+..+ ...++.++.+.++++|+..|+++|.+++||+ +++..+.. ++++..+||+||+. +.+.++.
T Consensus 731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~ 798 (1452)
T PTZ00297 731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGV 798 (1452)
T ss_pred HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCC
Confidence 655443 2445688999999999999999999999984 55533322 57788899999943 2333332
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccccC
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFLLK 508 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~~~ 508 (508)
. ...|+|+|+++++|.++++.... ...|||+++ |++||+.|.+. .+||+..|.+--+.+|
T Consensus 799 ~---~~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~~dG~L~IidRk 858 (1452)
T PTZ00297 799 F---CVDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWKRDRTLRLLGPP 858 (1452)
T ss_pred c---ccCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCccCCeEEEEecc
Confidence 2 12399999999999985443321 136999995 45899999985 4899999988766654
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=384.57 Aligned_cols=398 Identities=20% Similarity=0.241 Sum_probs=295.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
++..+.|++.++++|+++|+.+. + ..+||.||.+++.++|..|.+.|+++||+|+++++|++++++++|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 57889999999999999999764 2 46999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHH
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 203 (508)
+++|++++|+++..+.+++..+++.++++.++++.+....+.+..... ...+ .+.+....... .........+++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~~~~~~~~~ 163 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGPK-PLVIDVDDPEY---PGGRFIGALDYE 163 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCCc-eEEEecCcccc---ccCCCcccccHH
Confidence 999999999999999999999999999999999988776654432211 2211 22222111000 000112234566
Q ss_pred HHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHH
Q 010532 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (508)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 283 (508)
++..............+.+++++++|||||||.||+|+++|+++........ ....+..++++++.+|++|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~-----~~~~~~~~~~~l~~~pl~h~~~~ 238 (545)
T PRK08162 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNI-----LAWGMPKHPVYLWTLPMFHCNGW 238 (545)
T ss_pred HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH-----HhcCCCCCCeeEeccCcHhhhhH
Confidence 6654321111111122446789999999999999999999998876655422 22356778899999999999988
Q ss_pred HHHHHH-HHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCC
Q 010532 284 AIEEVF-ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (508)
Q Consensus 284 ~~~~~~-l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (508)
...+.. +..|..+++...++..+++.++++++|++.++|+++..|++......
T Consensus 239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------- 292 (545)
T PRK08162 239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-------------------------- 292 (545)
T ss_pred HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccc--------------------------
Confidence 764444 55555544444599999999999999999999999998875211000
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC---------
Q 010532 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--------- 433 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--------- 433 (508)
..+ .+.+.++++|+++++.+.+.+++ +++++++.||+||+++.+..+....
T Consensus 293 -----------~~~--------~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 352 (545)
T PRK08162 293 -----------AGI--------DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDE 352 (545)
T ss_pred -----------cCC--------ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccc
Confidence 000 13456788999999999998887 4899999999999976554432211
Q ss_pred -cccCCcccccccC-eeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 434 -MSMIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 434 -~~~~~s~G~p~~~-~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
....++.|.+++. ..++|+|.+++..++.+.++.|||+|+|+.++.||+++++.+...|.+|||+|||+|+++
T Consensus 353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d 427 (545)
T PRK08162 353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLH 427 (545)
T ss_pred hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEc
Confidence 0112456776653 357888833455454433357999999999999999999999999999999999999874
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=381.35 Aligned_cols=385 Identities=18% Similarity=0.154 Sum_probs=297.0
Q ss_pred HHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCee
Q 010532 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (508)
Q Consensus 51 ~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 130 (508)
...++++||++|+++. ++. +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4677889999999864 332 579999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHccc
Q 010532 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (508)
Q Consensus 131 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (508)
+|+++..+.+++.++++.++++.++++......+.+..... ......+....... ......+++......
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 146 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVLDGDGE---------LEGFVGYAEAVAGLP 146 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcC-CCceEEEEecCCCC---------CcccccHHHHhcCCC
Confidence 99999999999999999999999999987765554433222 33334444432111 011233444332211
Q ss_pred CCCCCCCCCCCCCeEEEEeccCCCCCcceEEe--ehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHH
Q 010532 211 NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV--SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEV 288 (508)
Q Consensus 211 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~--sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~ 288 (508)
. ....+.++.++++|||||||.||+|.+ +|.++......... ......+..++++++.+|++|.+++...+.
T Consensus 147 ~----~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 220 (511)
T PRK13391 147 A----TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAF--LQRLWGFRSDMVYLSPAPLYHSAPQRAVML 220 (511)
T ss_pred C----CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHH--HHHhcCCCCCCeEEEcCCHHHHHHHHHHHH
Confidence 1 111234567899999999999999995 46665433221110 112235678899999999999988887777
Q ss_pred HHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCc
Q 010532 289 FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367 (508)
Q Consensus 289 ~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (508)
++..|+++++.+. ++..+++.++++++|++.++|+++..+.+......
T Consensus 221 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------- 269 (511)
T PRK13391 221 VIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR------------------------------- 269 (511)
T ss_pred HHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc-------------------------------
Confidence 8999999999876 99999999999999999999999988764211100
Q ss_pred chhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCe
Q 010532 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV 447 (508)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~ 447 (508)
+ ....+++|.+++||+++++++.+.+++.+|..+++.||+||+++++..........++++|+|+++
T Consensus 270 ----~--------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g- 336 (511)
T PRK13391 270 ----D--------KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG- 336 (511)
T ss_pred ----c--------cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-
Confidence 0 001147999999999999999999999899999999999999987655433333345899999999
Q ss_pred eEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-cc-CceecCcccccc
Q 010532 448 DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD-GWFHTGCPHLFL 506 (508)
Q Consensus 448 ~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~-gw~~TGD~g~~~ 506 (508)
.++|+| +++...+ .|+.|||+++|+ ++.||+++++.+.+.| .+ |||+|||+|++.
T Consensus 337 ~~~i~d-~~~~~~~--~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~ 393 (511)
T PRK13391 337 DLHILD-DDGAELP--PGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVD 393 (511)
T ss_pred eEEEEC-CCCCCCC--CCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEEC
Confidence 689988 7766554 458999999999 8889999999998888 44 999999999874
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=389.05 Aligned_cols=390 Identities=18% Similarity=0.229 Sum_probs=284.6
Q ss_pred CHHHHHHHHHHhCCCCCceeEEeeccCC---CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 45 SCWDVFRMAVERNPNNRMLGQREIVDGK---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 45 tl~~~l~~~a~~~pd~~al~~~~~~~~~---~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
++.++|++++..+||++|+++. +.. .+..+++||.||.+++.++|+.|.+.| .+||+|+++++|++++++++|
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l 77 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL 77 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence 6889999999999999999875 311 122368999999999999999999999 689999999999999999999
Q ss_pred HHHhhCCeeeeccC---CCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCC-CCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 122 ACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKT-TEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 122 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
||+++|++++|+++ ..+.+++.++++.+++++++++.+..+.+.+..... ......++..+..
T Consensus 78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (578)
T PRK05850 78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL------------- 144 (578)
T ss_pred HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence 99999999999997 557899999999999999999987666554321110 0111122221110
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcc-cCCCCCcEEEEecC
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN-EKLTSEDVYVSYLP 276 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~p 276 (508)
++. . ..........++++++++|||||||.||||.++|+++++.+......+.... .....++++++.+|
T Consensus 145 ------~~~--~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 215 (578)
T PRK05850 145 ------DLD--S-PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP 215 (578)
T ss_pred ------ccc--c-CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence 000 0 0001112346689999999999999999999999999887765433211111 11356789999999
Q ss_pred hHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHH-HHHHhhhccChhHHHHHHH
Q 010532 277 LAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYS-GLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~-~~~~~~~~~~~~~~~~~~~ 349 (508)
++|..|+.. .+.+++.|+++++.+. ++..+++.+++++++.+ .+|.++..+.. .....
T Consensus 216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~-------------- 280 (578)
T PRK05850 216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD-------------- 280 (578)
T ss_pred CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh--------------
Confidence 999999876 6777999999999863 68999999999999855 56665443322 11000
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC------CceEeccCcccCC
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETC 423 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~ 423 (508)
.....++ +++|.+++||+++++++.+.|.+.|+ ..+++.||+||++
T Consensus 281 --------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 332 (578)
T PRK05850 281 --------------------DMAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT 332 (578)
T ss_pred --------------------hhcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence 0000011 37899999999999999999988763 3689999999987
Q ss_pred cceeccCCCCcc------------------------cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccc
Q 010532 424 AGTFVSLPNEMS------------------------MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (508)
Q Consensus 424 ~~~~~~~~~~~~------------------------~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~ 479 (508)
..+......... ...++|.|. +.+++|+| +++. .+++.|+.|||+|+|++++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~ 409 (578)
T PRK05850 333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA 409 (578)
T ss_pred hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence 655443221100 012345554 57899998 5432 23445689999999999999
Q ss_pred cccCChhhhhhhcc------------cCceecCcccccc
Q 010532 480 GYYKREDLTKEVMV------------DGWFHTGCPHLFL 506 (508)
Q Consensus 480 gY~~~~~~~~~~f~------------~gw~~TGD~g~~~ 506 (508)
||+++|+.+.+.|. +|||+|||+|++.
T Consensus 410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~ 448 (578)
T PRK05850 410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS 448 (578)
T ss_pred cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE
Confidence 99999999999882 4799999999763
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=459.22 Aligned_cols=374 Identities=19% Similarity=0.214 Sum_probs=306.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.++|+++++++||++|+++. + .++||+||.++++++|+.|++.|+++|++|+|++++++++++++|
T Consensus 1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691 1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999864 3 369999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++..++++++++++|++......+... ... .++..+..
T Consensus 1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~----------------- 1256 (4334)
T PRK05691 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSL----------------- 1256 (4334)
T ss_pred HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeeccc-----------------
Confidence 9999999999999999999999999999999999988654433211 111 11111111
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010532 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
.........+.....+++++|++|||||||.||||.++|+++.+.+.+....+ .+.++++++...|++|..
T Consensus 1257 ----~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 1327 (4334)
T PRK05691 1257 ----HLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDV 1327 (4334)
T ss_pred ----cccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 00000011111234678999999999999999999999999999888755444 788999999999999888
Q ss_pred HHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 282 DRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 282 g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
++...+.++..|+++++.+. ++..+++.|+++++|++.++|++++.+.+....
T Consensus 1328 s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~----------------------- 1384 (4334)
T PRK05691 1328 SVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA----------------------- 1384 (4334)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc-----------------------
Confidence 88778889999999999853 889999999999999999999999987641100
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCC-CCcc
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLP-NEMS 435 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~-~~~~ 435 (508)
...+++|.+++||+++++++.+.+.+.+ ++.++|.||+||++..++.... ....
T Consensus 1385 ------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 1440 (4334)
T PRK05691 1385 ------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDG 1440 (4334)
T ss_pred ------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccC
Confidence 0114799999999999999999998876 6899999999999877654332 1222
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c-----c--CceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-----D--GWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~-----~--gw~~TGD~g~~~ 506 (508)
...++|+|+++++++|+| ++++.+|. |+.|||+|+|++++.||+|+|+.|.+.| . + +||+|||+|++.
T Consensus 1441 ~~~~iG~p~~~~~~~i~d-~~~~~vp~--G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~ 1516 (4334)
T PRK05691 1441 ERSPIGRPLGNVLCRVLD-AELNLLPP--GVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWN 1516 (4334)
T ss_pred CCCcccceeCCCEEEEEC-CCCCCCCC--CCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEEC
Confidence 347899999999999999 77776655 4899999999999999999999999998 2 2 499999999875
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=417.54 Aligned_cols=387 Identities=18% Similarity=0.203 Sum_probs=296.2
Q ss_pred CCCCCHHHHHHHHHHhCC-CCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 41 PGMESCWDVFRMAVERNP-NNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~p-d~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
+...++.+.+.++++++| +++++.+. ++ +++||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 345778888888888887 55666542 22 469999999999999999975 999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHh--hcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
++||+++|++++|+++..+.+++.+++++++++++|++++...... ...... .....++.+++......
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-------- 769 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEAL-EFGIRIIYLEDVRAQIG-------- 769 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHh-ccCceEEEehHhhccCC--------
Confidence 9999999999999999999999999999999999999875443210 000001 12234444432211000
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
....+++..... ......+...++|+++++|||||||.||+|.++|+++..........+ .+.++|++++.+|+
T Consensus 770 ~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl 843 (1140)
T PRK06814 770 LADKIKGLLAGR-FPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPV 843 (1140)
T ss_pred hHHHHHHHhhcc-CCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecch
Confidence 000011111111 111111234679999999999999999999999999988887754433 67889999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010532 278 AHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
+|.+++.. .+.++..|+++++.+. +...+.+.++++++|++.++|++++.+.+...
T Consensus 844 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--------------------- 902 (1140)
T PRK06814 844 FHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--------------------- 902 (1140)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---------------------
Confidence 99999854 6677999999998864 66788899999999999999999987654210
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCc
Q 010532 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (508)
.. ..+++|.+++||+++++++.+.+++.+++++++.||+||++..+....+..
T Consensus 903 ------------------~~--------~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~- 955 (1140)
T PRK06814 903 ------------------PY--------DFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH- 955 (1140)
T ss_pred ------------------cc--------cccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-
Confidence 00 113799999999999999999999999999999999999988766554332
Q ss_pred ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhh-hcccCceecCcccccc
Q 010532 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE-VMVDGWFHTGCPHLFL 506 (508)
Q Consensus 435 ~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~-~f~~gw~~TGD~g~~~ 506 (508)
...+++|+|+|++++++++ .++ .++.|||+++|++++.||+++++.... .+.+|||+|||+|+++
T Consensus 956 ~~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d 1021 (1140)
T PRK06814 956 NKAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTID 1021 (1140)
T ss_pred CCCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEEC
Confidence 3348999999999999987 332 246899999999999999998754322 2268999999999975
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=376.33 Aligned_cols=395 Identities=18% Similarity=0.187 Sum_probs=304.3
Q ss_pred CHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHH
Q 010532 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (508)
Q Consensus 45 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (508)
||.+++++.++++||++|+.+. + +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG----D-----RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 7999999999999999999864 2 579999999999999999999999999999999999999999999999
Q ss_pred hhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHH
Q 010532 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (508)
Q Consensus 125 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (508)
++|++++|+++.++.+++.++++.+++++++++......+.+..... ...+.++.+++..... ...+.+++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~ 147 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRL-PKLRTLVVVEDGSGND------LLPGAVDYED 147 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccC-CCccEEEEecCCcccc------cCCccccHHH
Confidence 99999999999999999999999999999999988776666554332 5566666665432210 0113456777
Q ss_pred HHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhh----cccCC------CCCcEEEEe
Q 010532 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES----VNEKL------TSEDVYVSY 274 (508)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~----~~~~~------~~~~~~l~~ 274 (508)
++....... .......+.++++|||||||.||+|+++|+++..........+.. ....+ ..+++++..
T Consensus 148 ~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 148 ALAAGSPER--DFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHhccCCcC--CCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 765432211 111223455799999999999999999999987655432221100 01111 567899999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEec--C-CHHHHHHHhhhcCCeEEEeCcHHHHH-HHHHHHHhhhccChhHHHHHHHH
Q 010532 275 LPLAHIFDRAIEEVFISNGAAIGFWR--G-DVKLLLEDIGELKPTIFCAVPRVLDR-IYSGLNQKISSGGLLKKTLFNIA 350 (508)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~vv~~~--~-~~~~~~~~i~~~~~t~l~~~P~~l~~-l~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
+|++|..++...+.+++.|+++++.+ . ++..+++.+++++++.+.++|..+.. +.+.+..
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------- 289 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEA---------------- 289 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcc----------------
Confidence 99999999988888899999999998 4 89999999999999999999876643 3221110
Q ss_pred HHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceecc
Q 010532 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVS 429 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~ 429 (508)
......+++|.+++||+++++++.+++++.+ +..+++.||+||++.+....
T Consensus 290 ----------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 341 (533)
T PRK07798 290 ----------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT 341 (533)
T ss_pred ----------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence 0001124899999999999999999999888 78999999999997655543
Q ss_pred CCCCcccCCccc--ccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc--c--CceecCccc
Q 010532 430 LPNEMSMIGTVG--PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTGCPH 503 (508)
Q Consensus 430 ~~~~~~~~~s~G--~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~--~--gw~~TGD~g 503 (508)
..... ...| ++.++..++|++ +++..++.+....|+|+ +++.++.||+++++.+.+.|. + +||+|||+|
T Consensus 342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~ 416 (533)
T PRK07798 342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRA 416 (533)
T ss_pred CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEE
Confidence 22221 2333 788999999999 88776655432226665 566899999999999998882 3 599999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
++.
T Consensus 417 ~~~ 419 (533)
T PRK07798 417 RVE 419 (533)
T ss_pred EEc
Confidence 874
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=365.16 Aligned_cols=347 Identities=23% Similarity=0.299 Sum_probs=282.0
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcC
Q 010532 80 TYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 80 Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
||.||.+.++++|..|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcc
Q 010532 159 KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPK 238 (508)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK 238 (508)
.....+..... .++..... +...................+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 76655433211 11111110 0000000000001111135789999999999999999
Q ss_pred eEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcC
Q 010532 239 GVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELK 314 (508)
Q Consensus 239 ~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~ 314 (508)
+|.+||+++......+...+ .+.+++++++..|++|.+++...+.++..|+++++.+. .+..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999888865543 67788999999999999998888889999999999876 2689999999999
Q ss_pred CeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcC
Q 010532 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (508)
Q Consensus 315 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 394 (508)
++.+.++|.+++.+.+... ...+++|.+++||
T Consensus 212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g 243 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG 243 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence 9999999999999876322 0114799999999
Q ss_pred CCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCCCCcc----cCCcccccccCeeEEEeecCCCcccCCCCCCCce
Q 010532 395 APLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMS----MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGE 469 (508)
Q Consensus 395 ~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~----~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Ge 469 (508)
+++++++.+.+++.++ +.+++.||+||+++++......... .+.++|.|+++++++|++ +++..++ .|+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~--~g~~Ge 320 (408)
T TIGR01733 244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPVP--VGVVGE 320 (408)
T ss_pred ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCCC--CCCceE
Confidence 9999999999999997 8999999999999877533222211 157899999999999999 7655444 558999
Q ss_pred EEEecCcccccccCChhhhhhhcc-c------C--ceecCcccccc
Q 010532 470 VCVKGSTVFSGYYKREDLTKEVMV-D------G--WFHTGCPHLFL 506 (508)
Q Consensus 470 l~v~g~~v~~gY~~~~~~~~~~f~-~------g--w~~TGD~g~~~ 506 (508)
|+|+|+.++.||+++++.+.+.|. + | ||+|||+|+++
T Consensus 321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d 366 (408)
T TIGR01733 321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYL 366 (408)
T ss_pred EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEc
Confidence 999999999999999999988872 2 3 99999999985
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=377.44 Aligned_cols=379 Identities=20% Similarity=0.245 Sum_probs=293.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.++.+.|...+..+|+.+++.+. +.. +.+||.||.++++++|.+|.+.|+++||+|+|+++|+++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 56889899999999999998765 443 67999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHH-------HHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 124 NALGLHCVPLYDTLGAGAV-------EFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
+++|++++|+++..+.+++ ..+++.++++.+++++........... . .
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~------------------------~ 129 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE-K------------------------G 129 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc-c------------------------C
Confidence 9999999999998876554 446777899999998754332211100 0 1
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCC-cEEEEec
Q 010532 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE-DVYVSYL 275 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 275 (508)
...+.++++...... ......++++++++|||||||.||+|+++|+++...+..+...+ ++..+ |++++.+
T Consensus 130 ~~~~~~~~l~~~~~~---~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~ 201 (545)
T PRK07768 130 IRVLTVADLLAADPI---DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWL 201 (545)
T ss_pred CceeehhhhcccCCC---CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeC
Confidence 124455665543211 22344679999999999999999999999999988877644433 56665 8999999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010532 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 276 p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
|++|..++.. +..++..|+++++.+. ++..+++.+++++++.+.++|.++..+.+.+......
T Consensus 202 p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------- 270 (545)
T PRK07768 202 PLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------- 270 (545)
T ss_pred CCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------
Confidence 9999999876 5556999999988753 6788899999999999887777776655432111000
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHH---hCC---ceEeccCcccCC
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV---ACA---HVLQGYGLTETC 423 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~---~~~---~v~~~yG~tE~~ 423 (508)
...++ +++|.++++|+++++.+.+.+.+. +|. .+++.||+||++
T Consensus 271 ----------------------~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~ 320 (545)
T PRK07768 271 ----------------------GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEAT 320 (545)
T ss_pred ----------------------cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence 00111 379999999999999999988874 454 499999999998
Q ss_pred cceeccCCCC-------------------------cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCccc
Q 010532 424 AGTFVSLPNE-------------------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVF 478 (508)
Q Consensus 424 ~~~~~~~~~~-------------------------~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~ 478 (508)
..+....... ....+++|+|+++++++|++ +++..++ .++.|||+++|+.++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~--~g~~Gel~v~~~~~~ 397 (545)
T PRK07768 321 LAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLP--PRGVGVIELRGESVT 397 (545)
T ss_pred eEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCC--CCCEEEEEEccCccc
Confidence 7665433221 11236899999999999999 7776554 558999999999999
Q ss_pred ccccCChhhhhhhcccCceecCcccccc
Q 010532 479 SGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 479 ~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.||++++......+.+|||+|||+|++.
T Consensus 398 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~ 425 (545)
T PRK07768 398 PGYLTMDGFIPAQDADGWLDTGDLGYLT 425 (545)
T ss_pred ccccCCCCCcccccCCCeeeccceEEEe
Confidence 9999876655544478999999999874
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=373.26 Aligned_cols=367 Identities=19% Similarity=0.183 Sum_probs=289.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE
Q 010532 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 156 (508)
+.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCC
Q 010532 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (508)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (508)
++.....+.+........++.++..+... .....+++....... ......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQPD----TPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCCC----CCCCCCCcceEEEECCCCCCC
Confidence 98776655443322211445555543211 123345555443211 122355678999999999999
Q ss_pred cceEEeehHHHHHHHh--hhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhc
Q 010532 237 PKGVMVSNENIVTFIA--GVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGEL 313 (508)
Q Consensus 237 pK~V~~sh~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~ 313 (508)
||+|+++|.++..... ..... .........++++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 233 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLAL-LGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY 233 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhh-hhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence 9999999887653321 11000 1111123467899999999999988877778999999998876 899999999999
Q ss_pred CCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEc
Q 010532 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393 (508)
Q Consensus 314 ~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~ 393 (508)
++|++.++|+++..+.+..... .+..++ +++|.+++|
T Consensus 234 ~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~~ 270 (502)
T PRK08276 234 RVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIHA 270 (502)
T ss_pred CCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEec
Confidence 9999999999998876521000 000111 389999999
Q ss_pred CCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEe
Q 010532 394 AAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473 (508)
Q Consensus 394 G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~ 473 (508)
|++++.++.+.+++.++..+++.||+||++++++..........+++|+|+ +++++|+| +++..++ .|+.|||+++
T Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~--~g~~Gel~v~ 346 (502)
T PRK08276 271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELP--PGEIGTVYFE 346 (502)
T ss_pred CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCc--CCCceEEEEE
Confidence 999999999999998999999999999999877665543334457899999 88999998 7765554 4589999999
Q ss_pred cCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 474 GSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 474 g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
|+.++.||+++++.+...| .+|||+|||+|++.
T Consensus 347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~ 380 (502)
T PRK08276 347 MDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLD 380 (502)
T ss_pred CCCccchhcCCHHHHHHHhcCCCceeecceEEEc
Confidence 9999999999999999998 56999999999874
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=372.49 Aligned_cols=374 Identities=18% Similarity=0.184 Sum_probs=287.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE
Q 010532 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 156 (508)
+.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhH-----HHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEecc
Q 010532 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR-----EEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTS 231 (508)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TS 231 (508)
+......+.+.... .. .++.......... ............++++..... .......+++++++|||
T Consensus 90 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS 161 (509)
T PRK12406 90 HADLLHGLASALPA---GV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS 161 (509)
T ss_pred ccchhhhhhhhhhc---cc-ceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence 88766654433211 11 1111111100000 000001123445666543321 11233568999999999
Q ss_pred CCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHh
Q 010532 232 GTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDI 310 (508)
Q Consensus 232 GtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i 310 (508)
||||.||+|.++|.+.......... .....++..++++++.+|++|..+....+.++..|+++++.+. ++..+++.+
T Consensus 162 GtTG~PK~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 239 (509)
T PRK12406 162 GTTGHPKGVRRAAPTPEQAAAAEQM--RALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLI 239 (509)
T ss_pred CCCCCCceEEEechhHHHHHHHHHh--hhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHH
Confidence 9999999999977654333222111 2223367888999999999998887776667888999988776 899999999
Q ss_pred hhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEE
Q 010532 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLI 390 (508)
Q Consensus 311 ~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i 390 (508)
++++++++.++|+++..+.+...... . ....+++|.+
T Consensus 240 ~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------~--------~~~~~~l~~v 276 (509)
T PRK12406 240 ERHRITHMHMVPTMFIRLLKLPEEVR-----------------------------------A--------KYDVSSLRHV 276 (509)
T ss_pred HHcCCeEEEccHHHHHHHHhCchhhc-----------------------------------c--------cCCCCceeEE
Confidence 99999999999999988764211000 0 0011479999
Q ss_pred EEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceE
Q 010532 391 LSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470 (508)
Q Consensus 391 ~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel 470 (508)
++||+++++++.+.+++.+++.+++.||+||++.+++.........++++|+|+++++++|+| +++..++ .|+.|||
T Consensus 277 ~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel 353 (509)
T PRK12406 277 IHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLP--QGEIGEI 353 (509)
T ss_pred EEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCC--CCCceEE
Confidence 999999999999999999999999999999999877665444334458999999999999999 7776554 4589999
Q ss_pred EEecCcccc-cccCChhhhhhhcccCceecCcccccc
Q 010532 471 CVKGSTVFS-GYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 471 ~v~g~~v~~-gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+++|++++. ||+++++.+...+.+|||+|||+|+++
T Consensus 354 ~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~ 390 (509)
T PRK12406 354 YSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLD 390 (509)
T ss_pred EEECCccccccccCCchhcccccCCCCeEEccEEEEc
Confidence 999999875 999999988887789999999999874
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=368.67 Aligned_cols=341 Identities=22% Similarity=0.284 Sum_probs=277.9
Q ss_pred CCHHHHH-HHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVF-RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l-~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+++.+.+ .+.++++||++|+.+. + +.+||.||.++++++|+.|.+.|+.+||+|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la 72 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72 (458)
T ss_pred chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 4566665 5558899999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++..+.+++..+++++++++++++.+... +.. +... .+
T Consensus 73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~ 121 (458)
T PRK09029 73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HL 121 (458)
T ss_pred HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------cc
Confidence 9999999999999999999999999999999998876422 110 0000 00
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
.. ..........++++++++|||||||.||+|.+||+++...+......+ ....+++++..+|++|.++
T Consensus 122 ~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g 190 (458)
T PRK09029 122 QL------VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSG 190 (458)
T ss_pred cc------ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhh
Confidence 00 001112234678899999999999999999999999999888754433 6778899999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCC
Q 010532 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (508)
+...+.++..|+++++.+. ..+++.+ .+++.+..+|+++..+......
T Consensus 191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------- 238 (458)
T PRK09029 191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------- 238 (458)
T ss_pred hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence 8777778999999998874 4566666 4899999999999887642100
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccc
Q 010532 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (508)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (508)
..++|.+++||+++++.+.+.+++ +|.++++.||+||++......... ...++|+
T Consensus 239 ---------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G~ 293 (458)
T PRK09029 239 ---------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRAD---GLAGVGS 293 (458)
T ss_pred ---------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCCC---CCCCCCC
Confidence 026899999999999999999886 499999999999998765443322 1256999
Q ss_pred cccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 443 p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+++++++|++ |||+|+|+.++.||+++++.+.....+|||+|||+|+++
T Consensus 294 ~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~ 343 (458)
T PRK09029 294 PLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ 343 (458)
T ss_pred CCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe
Confidence 99999999876 899999999999999999888765578999999999874
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=359.57 Aligned_cols=331 Identities=24% Similarity=0.325 Sum_probs=269.5
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010532 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 80 Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++..+++..+++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcce
Q 010532 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239 (508)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~ 239 (508)
..... +. ...+.++................+++++++|||||||.||+
T Consensus 81 ~~~~~--------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKD--------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccc--------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 32110 00 00111111111111111223456889999999999999999
Q ss_pred EEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhcCCeEEE
Q 010532 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFC 319 (508)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~ 319 (508)
|.++|+++...+......+ ++.++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence 9999999998888755444 788899999999999999987778889999999998753 3999999999999999
Q ss_pred eCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCH
Q 010532 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399 (508)
Q Consensus 320 ~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~ 399 (508)
++|+++..+.+.... ..++|.++++|+++++
T Consensus 203 ~~P~~l~~l~~~~~~-------------------------------------------------~~~l~~~~~~G~~~~~ 233 (436)
T TIGR01923 203 LVPTQLNRLLDEGGH-------------------------------------------------NENLRKILLGGSAIPA 233 (436)
T ss_pred eHHHHHHHHHhCcCC-------------------------------------------------CCceEEEEECCCCCCH
Confidence 999999887652100 0279999999999999
Q ss_pred HHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccc
Q 010532 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (508)
Q Consensus 400 ~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~ 479 (508)
++.+.++. +++.+++.||+||++..+............++|+|+++++++|.. ++. ++.|||+++|+.++.
T Consensus 234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~-------~~~Gel~v~~~~~~~ 304 (436)
T TIGR01923 234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNK-------EGHGEIMVKGANLMK 304 (436)
T ss_pred HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCC-------CCceEEEEECCccch
Confidence 99998876 599999999999998866655443322223599999999999844 222 157999999999999
Q ss_pred cccCChhhhhhhcccCceecCcccccc
Q 010532 480 GYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 480 gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
||+++++.+...+.+|||+|||+|++.
T Consensus 305 gy~~~~~~~~~~~~~~~~~TGD~~~~~ 331 (436)
T TIGR01923 305 GYLYQGELTPAFEQQGWFNTGDIGELD 331 (436)
T ss_pred hhCCChhhhhhhhcCCCeeccceEEEc
Confidence 999998888777788999999999874
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=356.65 Aligned_cols=314 Identities=15% Similarity=0.136 Sum_probs=250.6
Q ss_pred EeeHHHHHHHHHHHHHHHHHcCC-CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE
Q 010532 78 WKTYKEVYDLVIKVVNAIRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 156 (508)
-+.|+||.+++.++|+.|.+.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 37999999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCC
Q 010532 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (508)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (508)
+.+..... .... ........++++++++|||||||.
T Consensus 99 ~~~~~~~~----------------~~~~----------------------------~~~~~~~~~~~~~~i~~TSGTTG~ 134 (452)
T PRK07445 99 LDQLKLSH----------------PPPL----------------------------PSQGILPNLETGWIMIPTGGSSGQ 134 (452)
T ss_pred cCcccccc----------------CCCC----------------------------CccccCCCCCCcEEEEeCCCCCCC
Confidence 76532100 0000 000011356889999999999999
Q ss_pred cceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCC
Q 010532 237 PKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKP 315 (508)
Q Consensus 237 pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~ 315 (508)
||+|++||+++...+......+ .+.+ ++.++.+|++|.+|+...+.+++.|+++++.+. ..........++++
T Consensus 135 PKgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~ 208 (452)
T PRK07445 135 IRFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSD 208 (452)
T ss_pred CcEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCc
Confidence 9999999999988877655433 3443 457889999999999877788999999999874 22222344457899
Q ss_pred eEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCC
Q 010532 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395 (508)
Q Consensus 316 t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~ 395 (508)
+++.++|++++.+.+... .++ +++|.+++||+
T Consensus 209 t~~~~vP~~l~~l~~~~~----------------------------------------~~l--------~~l~~i~~gG~ 240 (452)
T PRK07445 209 FFLSLVPTQLQRLLQLRP----------------------------------------QWL--------AQFRTILLGGA 240 (452)
T ss_pred eEEEehHHHHHHHHhhCh----------------------------------------hhh--------hcceEEEECCc
Confidence 999999999998764100 001 37999999999
Q ss_pred CCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec
Q 010532 396 PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474 (508)
Q Consensus 396 ~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g 474 (508)
++++++.+.+++ +++++++.||+||++..+....+.. ....+++|+|+|+++++|++ ++.|||+|+|
T Consensus 241 ~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g 308 (452)
T PRK07445 241 PAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQA 308 (452)
T ss_pred cCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeC
Confidence 999999988876 5899999999999986655443322 22347899999999999872 2689999999
Q ss_pred CcccccccCChhhhhhhcccCceecCcccccc
Q 010532 475 STVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 475 ~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|.++.||++++.. .+|||+|||+|+++
T Consensus 309 ~~~~~gY~~~~~~-----~~g~~~TGDl~~~d 335 (452)
T PRK07445 309 QSLALGYYPQILD-----SQGIFETDDLGYLD 335 (452)
T ss_pred CccchhhcCCccC-----CCCEEECCCEEEEc
Confidence 9999999986431 47999999999874
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=348.68 Aligned_cols=402 Identities=19% Similarity=0.232 Sum_probs=315.4
Q ss_pred CCCCCCCCHHHHH-HHHHHh-CCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh
Q 010532 38 APIPGMESCWDVF-RMAVER-NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (508)
Q Consensus 38 ~~~~~~~tl~~~l-~~~a~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~ 115 (508)
.....+.|..+.+ +++... .+|.+++++. +...+....+||.|+.+++.++|..|.+.|+++||+|++++|+.++
T Consensus 57 w~~g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e 133 (626)
T KOG1175|consen 57 WFPGAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPE 133 (626)
T ss_pred ccccchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChH
Confidence 3455666666654 444333 4889999887 4444433459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHH---------HhhcCCCC---C-CCccEEEEeC
Q 010532 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE---------MLKTFPKT---T-EHLKTIVSFS 182 (508)
Q Consensus 116 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~-~~l~~vi~~~ 182 (508)
++++.|||.++|++.+++-..++++++...++.++|+++++.+..... ..++.... . .....+++..
T Consensus 134 ~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 213 (626)
T KOG1175|consen 134 AVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSR 213 (626)
T ss_pred HHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEec
Confidence 999999999999999999999999999999999999999998753211 11111111 0 1111111111
Q ss_pred CCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHH-HHHHhhhhhhhhhc
Q 010532 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESV 261 (508)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l-~~~~~~~~~~~~~~ 261 (508)
.. ....|++.+.... ...+....+.+|+.+|+|||||||.||++.+++... +..+.. ...
T Consensus 214 ~~-------------~d~~~~~~~~~a~-~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~-----~~~ 274 (626)
T KOG1175|consen 214 RN-------------RDLFWSLELKKAS-PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALT-----SRY 274 (626)
T ss_pred cc-------------ccccHHHHhhhcC-CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhh-----cce
Confidence 11 1334555544432 333366778899999999999999999999988764 444444 344
Q ss_pred ccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC---CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhh
Q 010532 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (508)
Q Consensus 262 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (508)
.+.+.+.|++++.....|+.+.+. .+.+|++|++++++.. ++..+++.+.+|++|.+++.|+.++.+.+.......
T Consensus 275 ~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~ 354 (626)
T KOG1175|consen 275 HFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT 354 (626)
T ss_pred eccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc
Confidence 457889999999999999999887 6678999999999965 889999999999999999999999987653222111
Q ss_pred ccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceEec
Q 010532 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQG 416 (508)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~ 416 (508)
..+ + ++||.+.++||+++++...++.+.++. +|++.
T Consensus 355 ~~~-----------------------------------~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~ 391 (626)
T KOG1175|consen 355 SYS-----------------------------------L--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYET 391 (626)
T ss_pred ccc-----------------------------------c--------ceEEEEeecCccCCcchHHHHHHhcCccchhhc
Confidence 000 1 279999999999999999999999987 69999
Q ss_pred cCcccCCcceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--C-cccccccCChhhhhhhc
Q 010532 417 YGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--S-TVFSGYYKREDLTKEVM 492 (508)
Q Consensus 417 yG~tE~~~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~-~v~~gY~~~~~~~~~~f 492 (508)
||.||+|+.++.+.+.. ...+++.|.|.+|+.+.|.| ++|.+++... +.|+|+++. | +++++||+|++....++
T Consensus 392 ~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~y 469 (626)
T KOG1175|consen 392 YGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAY 469 (626)
T ss_pred eeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhh
Confidence 99999999999998887 66679999999999999999 8888777754 789999998 3 78999999999555544
Q ss_pred -c--cCceecCcccccc
Q 010532 493 -V--DGWFHTGCPHLFL 506 (508)
Q Consensus 493 -~--~gw~~TGD~g~~~ 506 (508)
. .|+|.|||.|+.+
T Consensus 470 f~k~pg~y~tGD~~~rd 486 (626)
T KOG1175|consen 470 FKKFPGYYFTGDGGRRD 486 (626)
T ss_pred cccCCceEEecCceEEc
Confidence 3 8999999999865
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=358.46 Aligned_cols=340 Identities=16% Similarity=0.137 Sum_probs=245.3
Q ss_pred cCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCC------HHHHhhcCCCCCCCccEEEEeCC
Q 010532 110 GVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK------IPEMLKTFPKTTEHLKTIVSFSK 183 (508)
Q Consensus 110 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~l~~vi~~~~ 183 (508)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.. .+.+.+.... ...+.++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEA--APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhc--ccceEEEEecc
Confidence 589999999999999999999999999999999999999999999998642 1112111111 11223332211
Q ss_pred CChhhHHHHhhcCcEEeeHHHHHHcccC------CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhh
Q 010532 184 VKPEQREEIEKYGLAVYSWDEFLQLGEN------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (508)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~ 257 (508)
..... . .......++++++..... .........++++++|+|||||||.||||++||++++........
T Consensus 79 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~- 153 (499)
T PLN03051 79 GEPVA---V-PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA- 153 (499)
T ss_pred CcccC---C-ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH-
Confidence 10000 0 000012356666532111 011111235689999999999999999999999998776544322
Q ss_pred hhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHh
Q 010532 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (508)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 335 (508)
..++..+|++++.+|++|..++...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..|.+....
T Consensus 154 ----~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~- 228 (499)
T PLN03051 154 ----HMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAF- 228 (499)
T ss_pred ----hcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcc-
Confidence 2367788999999999999887767778999999998863 788999999999999999999999987642100
Q ss_pred hhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh--CCce
Q 010532 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHV 413 (508)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v 413 (508)
.....++ ++||.+++||+++++++.+++++.+ ++.+
T Consensus 229 ----------------------------------~~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~ 266 (499)
T PLN03051 229 ----------------------------------AMEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV 266 (499)
T ss_pred ----------------------------------ccccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence 0000111 3799999999999999988887743 4789
Q ss_pred EeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcc--cccccCChhhhhhh
Q 010532 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV--FSGYYKREDLTKEV 491 (508)
Q Consensus 414 ~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v--~~gY~~~~~~~~~~ 491 (508)
++.||+||++..+...........+++|+|.++++++|+| +++.+++.|.++.|||+|+||.+ +.||||++. + +.
T Consensus 267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~ 343 (499)
T PLN03051 267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV 343 (499)
T ss_pred EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence 9999999987544332222222347999999999999999 88887777645689999999976 589998653 3 33
Q ss_pred cccC----------ceecCcccccc
Q 010532 492 MVDG----------WFHTGCPHLFL 506 (508)
Q Consensus 492 f~~g----------w~~TGD~g~~~ 506 (508)
|.+| ||+|||+|+++
T Consensus 344 ~~~g~~~~~~~~~~~~~TGDlg~~d 368 (499)
T PLN03051 344 YYKGMPMYGSKGMPLRRHGDIMKRT 368 (499)
T ss_pred eeecCCccccCCcceeecCCeEEEC
Confidence 4345 68999999875
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=373.57 Aligned_cols=384 Identities=15% Similarity=0.146 Sum_probs=273.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....++.++|++.++++||++|+++. + +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~----~-----~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD----G-----RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC----C-----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45568999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
+||+++|++++|++|. +++.++++.++++++|++.+....+... ...+++++........ . .......
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~-~-~~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLD-L-PDDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCcccccc-C-Ccchhhh
Confidence 9999999999999984 6899999999999999987766655332 1344554421100000 0 0000011
Q ss_pred eHHHHHHcccC-CC-CCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 201 SWDEFLQLGEN-KQ-FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 201 ~~~~l~~~~~~-~~-~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
.++++...... .. .......++++++|+|| ||||.||++.++|.+......... ....+..+|++++.+|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~-----~~~~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTA-----SAAALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhh-----hhcCCCCCCeEEEecChH
Confidence 11111110000 00 00112236889999999 577777777778876554433322 223678899999999999
Q ss_pred HHHHHHHHHHH-HHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 279 HIFDRAIEEVF-ISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 279 ~~~g~~~~~~~-l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
|.+++...+.+ +..|.++++.+. +++.+++.|+++++|+++++|+++..+.+....
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~---------------------- 714 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF---------------------- 714 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence 99999775544 666666666654 999999999999999999999999987652000
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCCCCcc
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
.. ...+++|.++ |+.+++++.+.+.+.++ +.+++.||+||++...... . ..
T Consensus 715 ---------------~~--------~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~-~--~~ 766 (994)
T PRK07868 715 ---------------VL--------HGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV-S--GA 766 (994)
T ss_pred ---------------cc--------CCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc-C--CC
Confidence 00 0113788776 33499999999999886 7899999999987654322 1 22
Q ss_pred cCCcccccccCe-eEEEeec----------CCCcccCCCCCCCceEEEecCcccccccCChhhh--hhhc--ccCceecC
Q 010532 436 MIGTVGPPVPNV-DVCLESV----------PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT--KEVM--VDGWFHTG 500 (508)
Q Consensus 436 ~~~s~G~p~~~~-~v~Iv~~----------~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~--~~~f--~~gw~~TG 500 (508)
.++++|+|+||+ +++|.+. ++|...+++.|+.|||+++|+.. + +|+.+ ...| .||||+||
T Consensus 767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG 841 (994)
T PRK07868 767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE 841 (994)
T ss_pred CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence 348999999998 6766421 23311234567999999999863 3 35443 2234 37999999
Q ss_pred cccccc
Q 010532 501 CPHLFL 506 (508)
Q Consensus 501 D~g~~~ 506 (508)
|+|+++
T Consensus 842 Dlg~~d 847 (994)
T PRK07868 842 YLFRRD 847 (994)
T ss_pred ceEEEc
Confidence 999975
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=307.36 Aligned_cols=395 Identities=17% Similarity=0.140 Sum_probs=293.9
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010532 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
.+....++++++..+++++||++|+++. +.. +++||+|+..+++++|+.|...|++.||.|+++|+|.++++.
T Consensus 72 ~rr~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~ 144 (649)
T KOG1179|consen 72 SRRERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVA 144 (649)
T ss_pred hhccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHH
Confidence 4456789999999999999999999987 432 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
.+|+++++|++...||+++..+.+.+.++.++++.+|++.+....+.++.+......-.++..+.... ..+
T Consensus 145 lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g 215 (649)
T KOG1179|consen 145 LWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDG 215 (649)
T ss_pred HHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------Cch
Confidence 99999999999999999999999999999999999999999887777774333222222333322211 011
Q ss_pred EeeHHHHHHcccCCCCC---CCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEec
Q 010532 199 VYSWDEFLQLGENKQFD---LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~---~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 275 (508)
..++.+.++.....+.+ ....+..++++.+|||||||.||+.+++|.........+...+ +++++|++..++
T Consensus 216 ~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~l 290 (649)
T KOG1179|consen 216 IESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTL 290 (649)
T ss_pred HHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcc
Confidence 22222223222222211 2233568899999999999999999999999988877654444 899999999999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 276 p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
|++|..+.+. ...++..|+++|+-.+ ++..+|+...+|++|++.-.-.+.+.|.++...
T Consensus 291 PLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~------------------- 351 (649)
T KOG1179|consen 291 PLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPS------------------- 351 (649)
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCC-------------------
Confidence 9999999887 6677999999999876 999999999999999999998888887752111
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceEeccCcccCCcceeccCCC
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPN 432 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~~~~~~~~~~ 432 (508)
+.. -.+++|.++ |..+.+++-+.|.++||. .+.+.||+||........ ..
T Consensus 352 ------------------~~e--------r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~-d~ 402 (649)
T KOG1179|consen 352 ------------------PEE--------RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY-DG 402 (649)
T ss_pred ------------------hhh--------cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee-cC
Confidence 000 014677665 555778899999999986 499999999986544433 22
Q ss_pred CcccCCcccc------cccCeeEEEeecC--------CCcccCCCCCCCceEEEec--Ccc---cccccCChhhhhhh--
Q 010532 433 EMSMIGTVGP------PVPNVDVCLESVP--------EMEYDALSSTPRGEVCVKG--STV---FSGYYKREDLTKEV-- 491 (508)
Q Consensus 433 ~~~~~~s~G~------p~~~~~v~Iv~~~--------~~~~~~~~~~~~Gel~v~g--~~v---~~gY~~~~~~~~~~-- 491 (508)
. .|.+|+ -+.-.++.=+|.. +|-=.++++||+|.++-+= ... |.||.+..++++++
T Consensus 403 ~---vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~ 479 (649)
T KOG1179|consen 403 R---VGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLL 479 (649)
T ss_pred c---cccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhH
Confidence 2 244443 1112222223312 2222667888999765432 233 89999977777665
Q ss_pred ---cc--cCceecCccccc
Q 010532 492 ---MV--DGWFHTGCPHLF 505 (508)
Q Consensus 492 ---f~--~gw~~TGD~g~~ 505 (508)
|. |-||.|||+-..
T Consensus 480 rDVFkkGD~~f~tGDlLv~ 498 (649)
T KOG1179|consen 480 RDVFKKGDVYFNTGDLLVA 498 (649)
T ss_pred HhhhccCcEEEeeCcEEEE
Confidence 33 449999998544
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=324.19 Aligned_cols=294 Identities=17% Similarity=0.112 Sum_probs=245.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE
Q 010532 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 156 (508)
+++||.||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..++++++++++++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 47999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCC
Q 010532 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (508)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (508)
++.... + . ......++++++++|||||||.
T Consensus 86 ~~~~~~------------~------~--------------------------------~~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 86 GESDFT------------K------L--------------------------------EAVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred cCcccc------------c------c--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence 763100 0 0 0012256789999999999999
Q ss_pred cceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcC
Q 010532 237 PKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELK 314 (508)
Q Consensus 237 pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~ 314 (508)
||+|.++|+++.+.+..+...+ ....+++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.+++++
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~ 190 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP 190 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence 9999999999998887755444 6678899999999999999865 6677999999998876 9999999999999
Q ss_pred CeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcC
Q 010532 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (508)
Q Consensus 315 ~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 394 (508)
++.++++|.++..+.+.... ..+++.++++|
T Consensus 191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G 221 (414)
T PRK08308 191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG 221 (414)
T ss_pred CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence 99999999999987642100 01578899999
Q ss_pred CCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec
Q 010532 395 APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474 (508)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g 474 (508)
+++++++.+.+++. +..+++.||+||++.+..... ....+++|+|+|++++++.+ + .++.|||++++
T Consensus 222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~ 288 (414)
T PRK08308 222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM 288 (414)
T ss_pred CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence 99999999999886 678999999999986543221 12347899999999999875 3 23679999975
Q ss_pred CcccccccCChhhhhhhcccCceecCcccccc
Q 010532 475 STVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 475 ~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
. +|||+|||+|++.
T Consensus 289 ~------------------~~~~~TGDl~~~~ 302 (414)
T PRK08308 289 G------------------DKEIFTKDLGYKS 302 (414)
T ss_pred C------------------CceEECCceEEEC
Confidence 2 6899999999874
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=302.03 Aligned_cols=377 Identities=20% Similarity=0.205 Sum_probs=296.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.....++.+.+...+.+.|+++|+... + .++||.|+..+++++|..|.+.|+.++++|+++++.+.+++++
T Consensus 223 ~~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~ 293 (642)
T COG1020 223 IPLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVA 293 (642)
T ss_pred CCccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHH
Confidence 334478999999999999999888763 1 4699999999999999999999999999999999889999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
++|++++|+.++|+++..+.+.+..++++++++.+++........... +. +..
T Consensus 294 ~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~------------------ 346 (642)
T COG1020 294 LLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LAL------------------ 346 (642)
T ss_pred HHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccc------------------
Confidence 999999999999999999999999999999999999983321110000 00 110
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
+.................+++.+|++|||||||.||||..+|+++...+.+....+ ..+..|+++...++.+
T Consensus 347 ---~~~~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~f 418 (642)
T COG1020 347 ---DDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSF 418 (642)
T ss_pred ---ccccccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCccc
Confidence 00000000000001223568999999999999999999999999999777755544 7888899999998866
Q ss_pred HHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
.......+.++..|+++++.+. ++..+.+.+.+++++++..+|.++..+...........
T Consensus 419 D~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~---------------- 482 (642)
T COG1020 419 DASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLIS---------------- 482 (642)
T ss_pred chhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccC----------------
Confidence 5566668889999999999875 89999999999999999999999988765311000000
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh--CCceEeccCcccCCcceeccCCCC
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~--~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
....+|.+++||+.++..+.+.+.... ...+.+.||.||+...........
T Consensus 483 ---------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~ 535 (642)
T COG1020 483 ---------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISA 535 (642)
T ss_pred ---------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEccc
Confidence 002489999999999999988877665 468999999999766554433222
Q ss_pred ccc-CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhccc-CceecCcccccc
Q 010532 434 MSM-IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~-~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~-gw~~TGD~g~~~ 506 (508)
... ...+|+|++++++.|.| ...+.+|.+ ..||+++.|.+++.||+++|+.|.+.|.. .+|+|||+++++
T Consensus 536 ~~~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~ 607 (642)
T COG1020 536 ELESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPL 607 (642)
T ss_pred ccCCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeEC
Confidence 111 35799999999999999 777777766 78999999999999999999999999944 599999999853
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=235.15 Aligned_cols=206 Identities=24% Similarity=0.326 Sum_probs=165.3
Q ss_pred CCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEE
Q 010532 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGF 298 (508)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~ 298 (508)
..++++++++|||||||.||+|.++|+++...+...... +...++++..+|++|..++...+.++..|+++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~ 104 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE 104 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence 356899999999999999999999999998887664332 2345788999999999998877788899999887
Q ss_pred ec----CCHHHHHHHhhhcC--CeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhH
Q 010532 299 WR----GDVKLLLEDIGELK--PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372 (508)
Q Consensus 299 ~~----~~~~~~~~~i~~~~--~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
.. +++..+++.+++++ .++...+|..+..+......
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-------------------------------------- 146 (358)
T PRK07824 105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-------------------------------------- 146 (358)
T ss_pred cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc--------------------------------------
Confidence 32 28999999999998 45566678776654331000
Q ss_pred HHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEe
Q 010532 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452 (508)
Q Consensus 373 ~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv 452 (508)
.....++|.+++||+++++++.+.+.+ +++.+++.||+||+++.+. ..|+|+++++++|.
T Consensus 147 --------~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i~ 206 (358)
T PRK07824 147 --------TAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRVE 206 (358)
T ss_pred --------cCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC-----------cCceeCCCCEEEec
Confidence 000137999999999999999998886 5899999999999876442 35899999999984
Q ss_pred ecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCccccc
Q 010532 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLF 505 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~ 505 (508)
+ |||+++|+.++.||+|+++.+ .| .+|||+|||+|++
T Consensus 207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~ 244 (358)
T PRK07824 207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL 244 (358)
T ss_pred C--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE
Confidence 3 999999999999999988754 34 6899999999986
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=234.09 Aligned_cols=400 Identities=13% Similarity=0.115 Sum_probs=284.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.++.|+|+.+++.+||++|+... ++.+..-.++||.+|..+|.+++..|... -++.||.|++++++++|++++++|
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~ 846 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA 846 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence 78999999999999999999988 77766668999999999999999999865 589999999999999999999999
Q ss_pred HHhhCCeeeeccCCCCh------HHHHHHHHhcCceEEEEcCCCHHHHhhcCCC---CCCCccEEEEeCCCChhhHHHHh
Q 010532 123 CNALGLHCVPLYDTLGA------GAVEFIICHSGVSIAFVEEKKIPEMLKTFPK---TTEHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~------~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~l~~vi~~~~~~~~~~~~~~ 193 (508)
|+.+|.+++|+.|.-.. ..+..+++.++++.|++++.....+.+.-.. ....+..++.+++...
T Consensus 847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~------- 919 (1363)
T KOG3628|consen 847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE------- 919 (1363)
T ss_pred HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-------
Confidence 99999999999886532 4677899999999999998755443321100 0022333333333321
Q ss_pred hcCcEEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEE
Q 010532 194 KYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~ 271 (508)
+|..-.++... ...++...+...+|++-+.--++|.-.++..||.++++.++.+.... .+.+...+
T Consensus 920 -------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl 987 (1363)
T KOG3628|consen 920 -------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPL 987 (1363)
T ss_pred -------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCce
Confidence 11111111111 11222334678899999999999999999999999999999988876 67777777
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHH
Q 010532 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (508)
Q Consensus 272 l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (508)
+.+.+.+.+.|+.. +++.+++|...++.+. ++..|+..|+++|+.-++.+-..+....+++..+....+
T Consensus 988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~----- 1062 (1363)
T KOG3628|consen 988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS----- 1062 (1363)
T ss_pred EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh-----
Confidence 77777776677765 5566999999888764 899999999999999999988888877664433211111
Q ss_pred HHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh---C---CceEeccCc
Q 010532 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA---C---AHVLQGYGL 419 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~---~---~~v~~~yG~ 419 (508)
..... .++ ..++..-+.....+...|.+.| | ..+...|+.
T Consensus 1063 --------------------------------~~gnn-~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~ 1108 (1363)
T KOG3628|consen 1063 --------------------------------KRGNN-TSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSS 1108 (1363)
T ss_pred --------------------------------hhhcc-ccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccc
Confidence 00000 011 4455566677777777777766 2 235556666
Q ss_pred ccCCcceeccCCCCcc--------------------------cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEe
Q 010532 420 TETCAGTFVSLPNEMS--------------------------MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473 (508)
Q Consensus 420 tE~~~~~~~~~~~~~~--------------------------~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~ 473 (508)
--.-.+|.....+..+ .....|...+++++.|++ |+.. .|+..|+.||||+.
T Consensus 1109 r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~ 1186 (1363)
T KOG3628|consen 1109 RVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVN 1186 (1363)
T ss_pred cCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEec
Confidence 5544444432211110 011248888999999999 7766 56668899999999
Q ss_pred cCcccccccCChh-hhhhhc----------ccCceecCcccccc
Q 010532 474 GSTVFSGYYKRED-LTKEVM----------VDGWFHTGCPHLFL 506 (508)
Q Consensus 474 g~~v~~gY~~~~~-~~~~~f----------~~gw~~TGD~g~~~ 506 (508)
|..-+.+|++-.+ ...+.| ..+|-||||+|++.
T Consensus 1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeee
Confidence 9999888885432 222222 13599999999985
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=205.47 Aligned_cols=223 Identities=11% Similarity=0.038 Sum_probs=162.7
Q ss_pred HHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhHHHHHHHHHhhCC
Q 010532 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNALGL 128 (508)
Q Consensus 50 l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 128 (508)
|..+++++|+++|+++. ++..+.-+++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 57788899999999864 3322122579999999999999999998 7999999999999999999999999999999
Q ss_pred eeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHc
Q 010532 129 HCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQL 208 (508)
Q Consensus 129 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 208 (508)
+++|+| .++++++|++++...... . . +.++.+........... .......++.+.+..
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 136 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRVAG-ELPPGVIDFAPEVRV 136 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCCCC-CCCCcccchhhhhhc
Confidence 999995 779999999988766632 1 1 22333211000000000 001123456665543
Q ss_pred ccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HH
Q 010532 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EE 287 (508)
Q Consensus 209 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~ 287 (508)
......+.+...++|++.++||||+ +|.+++... . ..++.++|+++ .+|++|.+|+.. ++
T Consensus 137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~-----~~~l~~~D~~l-~~Pl~H~~gl~~~~~ 197 (227)
T TIGR03089 137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----R-----AAGLPPGDRVL-VLAWTDLEDFLATLL 197 (227)
T ss_pred cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----h-----hcCCCCCCeEE-ecCCCchHHHHHHHH
Confidence 2121111113466899999999985 566655543 1 22578899999 999999999976 77
Q ss_pred HHHHcCCEEEEecC-CHHHHHHHhhhcCCe
Q 010532 288 VFISNGAAIGFWRG-DVKLLLEDIGELKPT 316 (508)
Q Consensus 288 ~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t 316 (508)
.+++.|+++++.+. ++..+++.|+++|||
T Consensus 198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 198 APLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 77999999999875 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=216.70 Aligned_cols=224 Identities=17% Similarity=0.115 Sum_probs=160.9
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH-HHHHHHHHHHcCCEEEE
Q 010532 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF-DRAIEEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-g~~~~~~~l~~G~~vv~ 298 (508)
..++++++++||||||.||+|.++|.++......+...+ ...++.++|++++..+..+.. ++...+.++..|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~--~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSI--RAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHH--HHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 556788999999999999999999999876654433221 123567889988876554322 33334556788999887
Q ss_pred ecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHH
Q 010532 299 WRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (508)
Q Consensus 299 ~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (508)
.+. +++.+++.|++++|++++++|+++..|++..........
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~------------------------------------- 193 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA------------------------------------- 193 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence 765 789999999999999999999999998764432210000
Q ss_pred HHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccc--cCeeEEEeecC
Q 010532 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV--PNVDVCLESVP 455 (508)
Q Consensus 378 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~--~~~~v~Iv~~~ 455 (508)
..++|.+++||+++++++.+.+++.||+.+++.||+||+++......... ...|.++ +++.++|+|.+
T Consensus 194 ------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd~~ 263 (422)
T TIGR02155 194 ------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE----TQDGLHIWEDHFYPEIIDPH 263 (422)
T ss_pred ------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc----cCCCceEecCeeEEEEECCC
Confidence 02799999999999999999999999999999999999853211111111 1123333 35677898833
Q ss_pred CCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 456 ~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
++.++ ++|+.|||++++. +.+.|..+||+|||+|++.
T Consensus 264 ~g~~v--~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~ 300 (422)
T TIGR02155 264 TGEVL--PDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLL 300 (422)
T ss_pred CCCCC--CCCCeeEEEEecC------------CccccceeeEEcCcEEEEE
Confidence 44444 4568999999973 2344567899999999863
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=186.82 Aligned_cols=166 Identities=18% Similarity=0.128 Sum_probs=128.2
Q ss_pred CCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC--CCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010532 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 222 ~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
+..++++|||||||.||+|.+||+++...+..+...+ ++ ...+++++.+|++|.+|+.. ++.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 5578999999999999999999999998887755443 33 34468999999999999865 6667889999988
Q ss_pred ecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHH
Q 010532 299 WRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (508)
Q Consensus 299 ~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (508)
.+. ++..+++.++.+ ++++++|.+++.+.+..
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~--------------------------------------------- 202 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD--------------------------------------------- 202 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC---------------------------------------------
Confidence 765 778888887654 88999999999875410
Q ss_pred HHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEE
Q 010532 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451 (508)
Q Consensus 378 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~I 451 (508)
...++++. ++||+++++++.+.+++. + ..+++.||+||+++++....+ +..|+|+|+.++++
T Consensus 203 ----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~------~~~~~~~p~~~~~~ 265 (386)
T TIGR02372 203 ----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAP------DDPFRLLPDLACFA 265 (386)
T ss_pred ----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCC------CCCcccCCCccccC
Confidence 00125665 688999999999999885 5 469999999999876543321 34578888877653
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=188.22 Aligned_cols=226 Identities=15% Similarity=0.111 Sum_probs=157.0
Q ss_pred CCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEE
Q 010532 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIG 297 (508)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv 297 (508)
...++++.+.+||||||.||+|.+||.++..........+. ..++.++|+++...+..+..+... ...++..|++++
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~--~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi 160 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFV--SQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII 160 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHH--HcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence 35678899999999999999999999998877655443221 235778899998888776555433 445577888765
Q ss_pred EecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHH
Q 010532 298 FWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (508)
Q Consensus 298 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (508)
... .....++.|++++++.+.++|+.+..+++..........
T Consensus 161 ~~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~------------------------------------- 202 (445)
T TIGR03335 161 PEG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA------------------------------------- 202 (445)
T ss_pred cCC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence 433 445678999999999999999998887764333211000
Q ss_pred HHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCC
Q 010532 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEM 457 (508)
Q Consensus 378 ~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~ 457 (508)
..++|.+++||+++++++.+.+++.||+.+++.||+||++. +..+... .....+.+++.++|+| +++
T Consensus 203 ------~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~~-----~g~h~~~d~~~vEIvD-p~~ 269 (445)
T TIGR03335 203 ------ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQAV-----AGLHVPEDLVHLDVYD-PRH 269 (445)
T ss_pred ------cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecCC-----CCccccCCceEEEEEc-CCC
Confidence 02799999999999999999999999999999999999863 2222111 1233344567899999 665
Q ss_pred cccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 458 EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 458 ~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
. .++++|+.|||++++-.-.. .+ +.++==-|+|||++++.
T Consensus 270 ~-~~vp~Ge~GELvvT~L~~~~----~r----~~~PliRYrtgD~~~~~ 309 (445)
T TIGR03335 270 Q-RFLPDGECGRIVLTTLLKPG----ER----CGSLLINYDTEDTTVVI 309 (445)
T ss_pred C-CCCcCCCceEEEEEecCCCC----cc----CCceEEEeecCceEEEe
Confidence 4 33456799999998742100 00 00000138999988763
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=170.42 Aligned_cols=401 Identities=14% Similarity=0.134 Sum_probs=272.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHH-HHHHcCCCCCcEEEEEcCCc--hhHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN-AIRTCGVEERGKCGIYGVNC--PEWIIG 119 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~-~L~~~gv~~gd~V~i~~~n~--~~~~~~ 119 (508)
+..+..+++++-.+++...|.+.. |.++. ...+||..+..++.++|+ .|.+-|++++|+|.+++..+ .++++.
T Consensus 93 ~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~is 168 (1363)
T KOG3628|consen 93 LTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLIS 168 (1363)
T ss_pred hcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhh
Confidence 455677788888999999999988 77777 689999999999999999 67788999999999998877 899999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
.++|...|.+++|+++..+-+++..+++....+++++.+.....+.+..+.. ++.+-+ .+
T Consensus 169 l~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--s~~k~v------------------~~ 228 (1363)
T KOG3628|consen 169 LFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--SLAKAV------------------AW 228 (1363)
T ss_pred hccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--cHHHHH------------------Hh
Confidence 9999999999999999999999999999999999999988776655443111 110000 00
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhh---------------hcccC
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---------------SVNEK 264 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~---------------~~~~~ 264 (508)
....++-.....+....+...-. .++|-||.+++|.--|++.+|+ ++.+++.+..+.. .....
T Consensus 229 w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~ 306 (1363)
T KOG3628|consen 229 WKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFP 306 (1363)
T ss_pred hhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccc
Confidence 00001100000011112222333 8899999999999999999998 6555544322111 11123
Q ss_pred CCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhcc
Q 010532 265 LTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (508)
Q Consensus 265 ~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (508)
.+..++++.........|++. ++.++++|.+.+.++. .+..+...+.++|.+++..--..++.....+..
T Consensus 307 ~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~----- 381 (1363)
T KOG3628|consen 307 VPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE----- 381 (1363)
T ss_pred cCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC-----
Confidence 456778888888888888887 7778999999999985 788999999999999988877666654432111
Q ss_pred ChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh----CC----
Q 010532 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA----CA---- 411 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~----~~---- 411 (508)
.|..+ +.+.+-.....+++|.+++....+..+.......++ |.
T Consensus 382 ----------------------------~p~a~-~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~ 432 (1363)
T KOG3628|consen 382 ----------------------------DPKAT-LSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVK 432 (1363)
T ss_pred ----------------------------Ccccc-cchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcc
Confidence 11111 112222222347999999999999888654443322 21
Q ss_pred --------------ceEeccCcccCCcceeccCCCCc-c----------------------------cCCcccccccCe-
Q 010532 412 --------------HVLQGYGLTETCAGTFVSLPNEM-S----------------------------MIGTVGPPVPNV- 447 (508)
Q Consensus 412 --------------~v~~~yG~tE~~~~~~~~~~~~~-~----------------------------~~~s~G~p~~~~- 447 (508)
-....=+++|.+......+.... . ....+|..+||-
T Consensus 433 ~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~ 512 (1363)
T KOG3628|consen 433 VVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDA 512 (1363)
T ss_pred eeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccce
Confidence 11112233455443332222100 0 012367777663
Q ss_pred eEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc------c-------CceecCccccc
Q 010532 448 DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------D-------GWFHTGCPHLF 505 (508)
Q Consensus 448 ~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~------~-------gw~~TGD~g~~ 505 (508)
.+.|+ ++|....+..+++|||||.++++..+||.-+..|...|. . .|.|||=+|++
T Consensus 513 t~~vv--~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv 581 (1363)
T KOG3628|consen 513 TLAVV--NPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFV 581 (1363)
T ss_pred EEEEe--CCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeee
Confidence 34444 455556666789999999999999999988887777661 1 27899988875
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=152.66 Aligned_cols=225 Identities=20% Similarity=0.146 Sum_probs=163.2
Q ss_pred CCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH-HHHHHHHHHHHHHcCCEE
Q 010532 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA-HIFDRAIEEVFISNGAAI 296 (508)
Q Consensus 218 ~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~g~~~~~~~l~~G~~v 296 (508)
....++...|-.||||||.|+.+.+++..+......+.+.+. ..+...+|++..+.... +..|+...+.+--.|+++
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~--~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v 163 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLY--SAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV 163 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHH--HccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence 445667777999999999999999999999888888877653 33566777766654421 223334445555577776
Q ss_pred EEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHh
Q 010532 297 GFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375 (508)
Q Consensus 297 v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (508)
+-... +...-+++|+.++++++.++|+.+..|++.+...+.... .
T Consensus 164 ip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~----------------------------------~ 209 (438)
T COG1541 164 IPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD----------------------------------K 209 (438)
T ss_pred EccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh----------------------------------h
Confidence 66655 889999999999999999999999999987766541100 0
Q ss_pred HHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcce-eccCCCCcccCCcccccccCeeEEEeec
Q 010532 376 FDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT-FVSLPNEMSMIGTVGPPVPNVDVCLESV 454 (508)
Q Consensus 376 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~-~~~~~~~~~~~~s~G~p~~~~~v~Iv~~ 454 (508)
.++|.++.|+|++++++++.+++.||+..++.||+||..+.. ..|... ......-++..+.|+|
T Consensus 210 ---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~-----~glhi~eD~~~~Ei~d- 274 (438)
T COG1541 210 ---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER-----NGLHIWEDHFIFEIVD- 274 (438)
T ss_pred ---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc-----cCCCcchhhceeeeec-
Confidence 379999999999999999999999999999999999997764 222221 1123344677899999
Q ss_pred CCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 455 ~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+..+ +.+.|+.|||+++.=. + +.++==-|+|||++++.
T Consensus 275 P~t~e-~l~dge~GelV~T~L~------~------~~~PlIRYrtgDit~i~ 313 (438)
T COG1541 275 PETGE-QLPDGERGELVITTLT------K------EGMPLIRYRTGDITVIL 313 (438)
T ss_pred CCcCc-cCCCCCeeEEEEEecc------c------cCcceEEEEcCCeeEec
Confidence 54443 3335588999987522 1 11111148999999875
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-16 Score=163.57 Aligned_cols=345 Identities=17% Similarity=0.110 Sum_probs=213.9
Q ss_pred ceeecCccCCCCCCCC------CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc
Q 010532 25 PVYRSLFAKDGFPAPI------PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC 98 (508)
Q Consensus 25 ~~~~~~~~~~~~~~~~------~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~ 98 (508)
-.++.....+++|... .-+.++.+.+++.+...|.+.+..+.+. ....+.....||.+....++.+++.|...
T Consensus 11 ~~~~~~~~~d~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~ 89 (1032)
T KOG1178|consen 11 LSLITYRQEDSLPDETKQIGFEQFMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSL 89 (1032)
T ss_pred ceeeccccccccCChhhhhhhhhhhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhc
Confidence 3445555555555532 2235667788999999999998877632 33344457899999999999999999999
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCC----hHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCC
Q 010532 99 GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG----AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEH 174 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~----~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 174 (508)
|..+|+.|++++..+.++++..++.+++|..+.+++|+++ ++++..+..... ...-.+....++....
T Consensus 90 ~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~-----s~~~~i~~~l~i~~~~--- 161 (1032)
T KOG1178|consen 90 GSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLT-----SVELEIVRRLNIIDIL--- 161 (1032)
T ss_pred ccccCceEEEeccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhhe-----eccceehhhhhhHHHH---
Confidence 9999999999999999999999999999999999999999 332222211110 0000000000000000
Q ss_pred ccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHH-cccCCCCC-CCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHh
Q 010532 175 LKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ-LGENKQFD-LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA 252 (508)
Q Consensus 175 l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~ 252 (508)
..+-. .+..+...++.+. .......+ .....++..+++.||||+||.||+|..+|..+.....
T Consensus 162 -----~~~~~----------~~~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fd 226 (1032)
T KOG1178|consen 162 -----LNSLF----------PKLSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFD 226 (1032)
T ss_pred -----hhccc----------cccchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhh
Confidence 00000 0000111111111 11111111 2234567789999999999999999999999999999
Q ss_pred hhhhhhhhcccCCCCCcEEEEecChH-HHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHH
Q 010532 253 GVKCLLESVNEKLTSEDVYVSYLPLA-HIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDR 327 (508)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~ 327 (508)
+....+ .....+++-.....+ +..-.-+....+..|+.+..+.. ++.++...+++++++..+.+|++.++
T Consensus 227 w~~~~f-----~~t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~ 301 (1032)
T KOG1178|consen 227 WMFTTF-----PPTGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQL 301 (1032)
T ss_pred hccccC-----CcCccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhh
Confidence 866554 555555543333332 21112234444667776666543 58999999999999999999999988
Q ss_pred HHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHH
Q 010532 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRV 407 (508)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~ 407 (508)
+....+.-.. +..+ ...+++ +. ..-+.|+....+|++...++...+..
T Consensus 302 l~~~~~~~~~----------~l~~---~~~~~d------------------l~-~~~~~Lkl~~~~~ep~~v~l~~s~~~ 349 (1032)
T KOG1178|consen 302 LLAILTTSLP----------LLEH---AFSLSD------------------LL-TKRSCLKLVVLGGEPLLVSLYTSTFD 349 (1032)
T ss_pred hhhhcCcchh----------hhhh---hhhccc------------------cc-ccchhheeeeecCCccchhhhhhhhh
Confidence 8764332100 0000 000000 00 00037899999999999998775554
Q ss_pred HhC-CceEeccCcccCCcceeccC
Q 010532 408 VAC-AHVLQGYGLTETCAGTFVSL 430 (508)
Q Consensus 408 ~~~-~~v~~~yG~tE~~~~~~~~~ 430 (508)
.+- .-...-|+.++..+-+....
T Consensus 350 ~~~~~~~~~~y~s~~~~~~~s~~~ 373 (1032)
T KOG1178|consen 350 LLAEIFFGLPYLSTDPTGLVSYDD 373 (1032)
T ss_pred cccceeeeecccCCCCccceeHHh
Confidence 442 22333488888777665544
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-12 Score=125.86 Aligned_cols=151 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred eEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecC-hHHHHHHHHHHHHHHc-CCEEEEec-
Q 010532 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP-LAHIFDRAIEEVFISN-GAAIGFWR- 300 (508)
Q Consensus 224 ~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p-~~~~~g~~~~~~~l~~-G~~vv~~~- 300 (508)
-..+..||||||.|-.+..+.............. ....+...++++...+. -.+.+. .+.. ...+...+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~--~~~~g~~~g~r~a~~~~~~~~ly~------~~~~~~~~~~~~~l 172 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAK--VLPDGLFAKHRIAFFLRADNNLYQ------SVNNRWISLDFFDL 172 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhh--hCccccccCCcEEEEEccChhHHH------HHHhccceeeecCC
Confidence 3467789999999999999988765444332221 12223344444443321 111111 1111 11122222
Q ss_pred -CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHH
Q 010532 301 -GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379 (508)
Q Consensus 301 -~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (508)
.+.+..++.|++++|+++.++|+.+..|++........
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~----------------------------------------- 211 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT----------------------------------------- 211 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-----------------------------------------
Confidence 37899999999999999999999999998854432110
Q ss_pred HHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceecc
Q 010532 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (508)
Q Consensus 380 ~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~ 429 (508)
-.++.++++||+++++..+.+++.||+++++.||+|| |.+...|
T Consensus 212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC 255 (430)
T TIGR02304 212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTC 255 (430)
T ss_pred -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEec
Confidence 1579999999999999999999999999999999999 5554444
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=85.30 Aligned_cols=220 Identities=15% Similarity=0.175 Sum_probs=126.8
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH---HHHH-HH-HHHHHHcCC
Q 010532 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH---IFDR-AI-EEVFISNGA 294 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~---~~g~-~~-~~~~l~~G~ 294 (508)
.++++..++.||||||.+--+.+.+..+..+...+...+..........-.++...|... ..+. .. .......+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 456677889999999998767777777776665555443211111122233444334321 1111 11 222244555
Q ss_pred EEEEecC--CHHHHHHHh----hhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcc
Q 010532 295 AIGFWRG--DVKLLLEDI----GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368 (508)
Q Consensus 295 ~vv~~~~--~~~~~~~~i----~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (508)
.-.+-.. +...+...+ ...++-.++++|.++..+...++.......
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~---------------------------- 218 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR---------------------------- 218 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence 5333222 555555544 467889999999988877765544322111
Q ss_pred hhhHHHhHHHHHHHcCCcEEEEEEcC------CCCC-HHHHHHHHHHhCC----ceEeccCcccCCcceeccCCCCcccC
Q 010532 369 PIADKIVFDKVKQSFGGRVRLILSGA------APLT-PHVETFLRVVACA----HVLQGYGLTETCAGTFVSLPNEMSMI 437 (508)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~lr~i~~~G------~~l~-~~~~~~~~~~~~~----~v~~~yG~tE~~~~~~~~~~~~~~~~ 437 (508)
+ .+..+.+-.|| +.++ +++.+.+++.||+ .+++.|||||.......+....
T Consensus 219 -------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~---- 280 (365)
T PF04443_consen 219 -------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH---- 280 (365)
T ss_pred -------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc----
Confidence 0 01345566666 3464 5677888888987 6999999999875544432211
Q ss_pred CcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCccccc
Q 010532 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLF 505 (508)
Q Consensus 438 ~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~ 505 (508)
.+.|.- +.|.| +++ ..|++.|+.|-|.+-.+... .| .|..-|.|+|.+
T Consensus 281 ----~~~p~w-V~iRD-p~t-l~~~~~Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl 328 (365)
T PF04443_consen 281 ----FHVPPW-VIIRD-PET-LEPLPPGETGLIQVIDLANT-SY------------PGFILTEDLGVL 328 (365)
T ss_pred ----ccCCCe-EEEEC-CCC-CcCCCCCCeeEEEEEccccc-CC------------CcEEEEcceeee
Confidence 122222 66777 443 45666779999998776432 12 345677777743
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.015 Score=60.73 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=33.2
Q ss_pred EEeeHHHHHHcccCCC-CCCCCCCCCCeEEEEeccCCCCC-cceEEeehHHHHH
Q 010532 198 AVYSWDEFLQLGENKQ-FDLPVKKKNDICTIMYTSGTTGD-PKGVMVSNENIVT 249 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~-pK~V~~sh~~l~~ 249 (508)
.+.+++++....+... -+.....++.+.+...||||||. +|-+..|...+..
T Consensus 55 Pi~~Yed~~pyIeR~~~Ge~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 55 PITDYEDYRPYIERIAEGEENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp --BEHHHHHHHHHHHHTT--CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4667777654433211 11224466778999999999999 9999999887655
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.6 Score=49.03 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.9
Q ss_pred EEeeHHHHHHcccCCCC-CC-CCCCCCCeEEEEeccCCCC-CcceEEeehHHHHH
Q 010532 198 AVYSWDEFLQLGENKQF-DL-PVKKKNDICTIMYTSGTTG-DPKGVMVSNENIVT 249 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~-~~-~~~~~~~~a~i~~TSGtTG-~pK~V~~sh~~l~~ 249 (508)
.+.+++++....+.... +. ....+..+.++..|||||| .+|-+.+++..+..
T Consensus 75 Pv~~Yedl~pyI~Ri~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 75 PVITYEDIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred CCccHHHhHHHHHHHHcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 35566665433222111 11 2345677789999999997 59999999997665
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.084 Score=52.71 Aligned_cols=109 Identities=8% Similarity=-0.053 Sum_probs=84.6
Q ss_pred ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch--hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCce
Q 010532 75 KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS 152 (508)
Q Consensus 75 ~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 152 (508)
...-+|+.|+...+..+|+.|...|..+||+|.....-+. .-+-..+|+.++|+.++|+.+. ..+....++++.++.
T Consensus 106 t~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~t 184 (438)
T COG1541 106 TVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPT 184 (438)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCc
Confidence 3467999999999999999999999999999888766332 2267889999999999999985 445566788999999
Q ss_pred EEEEcCCCHHHHhhcCCCC-----CCCccEEEEeCCC
Q 010532 153 IAFVEEKKIPEMLKTFPKT-----TEHLKTIVSFSKV 184 (508)
Q Consensus 153 ~vi~~~~~~~~~~~~~~~~-----~~~l~~vi~~~~~ 184 (508)
+|.+....+-.+.+...+. ..+++.++.....
T Consensus 185 vI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~ 221 (438)
T COG1541 185 VIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEP 221 (438)
T ss_pred EEEEChHHHHHHHHHHHHcCCChhhcceeEEEEeccc
Confidence 9999998765544433222 2677777776444
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.3 Score=46.62 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.9
Q ss_pred CCCCeEEEEeccCCCC-CcceEEeehHHHHHH
Q 010532 220 KKNDICTIMYTSGTTG-DPKGVMVSNENIVTF 250 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG-~pK~V~~sh~~l~~~ 250 (508)
.+..+.++..|||||| .+|-+.+|+..+-..
T Consensus 87 t~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~ 118 (606)
T PLN02247 87 SAQPITELLTSSGTSGGQPKLMPSTAEELDRK 118 (606)
T ss_pred CCCCcceeeccCCCCCCceeEeeccHHHHHHH
Confidence 3677889999999995 899999999876543
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.47 Score=50.11 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=25.9
Q ss_pred CCCCCeEEEEeccCCC-CCcceEEeehHHHH
Q 010532 219 KKKNDICTIMYTSGTT-GDPKGVMVSNENIV 248 (508)
Q Consensus 219 ~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~ 248 (508)
..++.+.+...||||| |.+|-+.+|.+.+-
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 4577788999999999 88999999997664
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.3 Score=43.73 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=73.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh--HHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010532 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
.-+|..++...+...+..+...|+.+||++.+..+.+.. ....++++..+|+.++|... ......+++..++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 568999999888888888888899999999988776543 23456788899998877653 2345678899999999
Q ss_pred EEcCCCHHHHhhcCC-----CCCCCccEEEEeCCC
Q 010532 155 FVEEKKIPEMLKTFP-----KTTEHLKTIVSFSKV 184 (508)
Q Consensus 155 i~~~~~~~~~~~~~~-----~~~~~l~~vi~~~~~ 184 (508)
++....+-.+.+... .....++.++..+..
T Consensus 181 ~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~ 215 (445)
T TIGR03335 181 VASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES 215 (445)
T ss_pred EECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence 886654433322111 112467777776544
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.6 Score=42.86 Aligned_cols=107 Identities=14% Similarity=0.031 Sum_probs=75.5
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch--hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010532 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
..+|..++......++..+...|+.+||++........ ......+++...|+.+++++... .+.+...+++.++.++
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 45678888777777777888889999999887655442 22334677889999999888764 5778899999999999
Q ss_pred EEcCCCHHHHhhcCCC-----CCCCccEEEEeCCC
Q 010532 155 FVEEKKIPEMLKTFPK-----TTEHLKTIVSFSKV 184 (508)
Q Consensus 155 i~~~~~~~~~~~~~~~-----~~~~l~~vi~~~~~ 184 (508)
++....+..+.+.... ....++.++..+..
T Consensus 172 ~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~ 206 (422)
T TIGR02155 172 MVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEP 206 (422)
T ss_pred EEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCc
Confidence 9988776555432111 11356676665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=0.22 Score=49.32 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=13.1
Q ss_pred hcccCceecCccccc
Q 010532 491 VMVDGWFHTGCPHLF 505 (508)
Q Consensus 491 ~f~~gw~~TGD~g~~ 505 (508)
.|.||||+|||+|++
T Consensus 205 ~~~dgW~~TGDlg~~ 219 (365)
T PRK09188 205 LPSRIWLATGKKVYN 219 (365)
T ss_pred cccCcEEeCCCEEEE
Confidence 457999999999986
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=82.99 E-value=18 Score=37.59 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=81.9
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch--hHHHHHHHHHhhCCeeee
Q 010532 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vp 132 (508)
.++.++++... .+..+. -..+|+..+...+..+.. ..+++++|++...++..- .+...+++++..|+.+++
T Consensus 164 ~~~~~a~i~~T--SGtTG~PK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 238 (513)
T PRK07656 164 DPDDVADILFT--SGTTGRPKGAMLTHRQLLSNAADWAE---YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP 238 (513)
T ss_pred CCCceEEEEeC--CCCCCCCCEEEEecHHHHHHHHHHHH---hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEe
Confidence 44566666541 222232 257899988766655443 347889999888777543 334557889999998776
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCC---CCCCccEEEEeCCC
Q 010532 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK---TTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~l~~vi~~~~~ 184 (508)
. +..+++.+...+++.++.+++.....+..+.+.... ....++.++..+..
T Consensus 239 ~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~ 292 (513)
T PRK07656 239 L-PVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAAS 292 (513)
T ss_pred c-CcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCC
Confidence 4 567889999999999999999888777666543322 22556666665544
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=82.51 E-value=23 Score=36.77 Aligned_cols=121 Identities=11% Similarity=-0.060 Sum_probs=81.4
Q ss_pred CCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH-HHHHHHHHhhCCeeeecc
Q 010532 58 PNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPLY 134 (508)
Q Consensus 58 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~ 134 (508)
++.++++... .+..+. ...+|+..+...+..... ..+++++|++....+..-.. ....++++..|+.++..+
T Consensus 166 ~~~~~~i~~T--SGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 240 (521)
T PRK06187 166 ENDAAAMLYT--SGTTGHPKGVVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPR 240 (521)
T ss_pred ccceEEEEEC--CCCCCCCceEEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecC
Confidence 3556665541 222232 357899988876666554 45789999988887765322 334455888899887666
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCC---CCCCccEEEEeCCC
Q 010532 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK---TTEHLKTIVSFSKV 184 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~l~~vi~~~~~ 184 (508)
.. +.+.+...+++.++.++++....+..+.+.... ....++.++..+..
T Consensus 241 ~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~ 292 (521)
T PRK06187 241 RF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAA 292 (521)
T ss_pred CC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcC
Confidence 64 889999999999999999988776666544322 33567776665543
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=80.31 E-value=30 Score=34.51 Aligned_cols=123 Identities=12% Similarity=0.127 Sum_probs=86.3
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeeeec
Q 010532 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 133 (508)
.++.++++... .+..+ ....+|+..+...+..+.. ..++.++|++....+.... .+..++..+..|+..+..
T Consensus 118 ~~~~~~~i~~T--SGTtG~pK~v~~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~ 192 (408)
T TIGR01733 118 GPDDLAYVIYT--SGSTGRPKGVVVTHRSLVNLLAWLAR---RYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVP 192 (408)
T ss_pred CCCCcEEEEEc--CCCCCCCCEEEeccHHHHHHHHHHHH---hcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEc
Confidence 46777776651 22222 2366788888877766655 4467789998887776543 455677888888887776
Q ss_pred cCCCC--hHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCC
Q 010532 134 YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (508)
Q Consensus 134 ~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~ 184 (508)
+.... .+.+..+++..++..+++....+..+.+........++.++..+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~v~~~g~~ 245 (408)
T TIGR01733 193 PEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALPPALASLRLVILGGEA 245 (408)
T ss_pred ChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhhhcccCceEEEEeCcc
Confidence 66554 6888999999999999999887777666543444678777776554
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 508 | ||||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 5e-15 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 6e-15 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 8e-15 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-14 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-13 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 6e-12 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 2e-11 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-11 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-11 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-11 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 3e-11 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 4e-11 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 3e-10 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 3e-10 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-10 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-09 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 5e-09 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 7e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 9e-07 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 1e-06 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 1e-05 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 3e-05 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 4e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 5e-05 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 5e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 7e-04 |
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 1e-58
Identities = 105/490 (21%), Positives = 178/490 (36%), Gaps = 91/490 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
+ PI S R +ER + + G +Y E
Sbjct: 10 IVVGPKP----FYPIEEG-SAGTQLRKYMERYAKLGAIA---FTNAVTGVDY--SYAEYL 59
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+ + A++ G+ G+ + NC E+ I + A +G+ P + +
Sbjct: 60 EKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
+ S +I F +K + +++ T ++ SKV D F
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR----------GYQCLDTF 169
Query: 206 LQLGENKQFDL------PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
++ F V +K + IM +SG+TG PKGV +++ENIVT + + +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKP 315
+++ ++ +P H F ++ G + F D + L+ + + K
Sbjct: 230 G--NQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKC 284
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
T VP +++ LN K + +K
Sbjct: 285 TSVILVP----TLFAILN-----------------------------KS----ELLNK-- 305
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+D + I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 306 YDL------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGD 358
Query: 435 SMIGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G G VP + L++ + + RGEVCVKG + GY + TKE+
Sbjct: 359 DKPGASGKVVPLFKAKVIDLDTKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 492 M-VDGWFHTG 500
+ +GW HTG
Sbjct: 414 IDEEGWLHTG 423
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 4e-58
Identities = 92/498 (18%), Positives = 171/498 (34%), Gaps = 105/498 (21%)
Query: 26 VYRSLFAKDGFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEV 84
Y+ GFP+ P + S D A E+ + E + E+
Sbjct: 6 KYKI-----GFPSLYYPKI-SLADRIDAAAEKFGEKTAIISAEPKFPSEFPESM-NFLEI 58
Query: 85 YDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEF 144
++ K+ + I GV + G+ N ++++ + A + VP+ + +E
Sbjct: 59 CEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEH 118
Query: 145 IICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204
I+ S + V KT ++ + G V S E
Sbjct: 119 ILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVV--------------GGEVNSLSE 162
Query: 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK 264
+ G ++ V + D+ I YT GTTG PKGVM+++ N+ +
Sbjct: 163 VMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG----- 217
Query: 265 LTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCA 320
L+ D V +P+ H + + + ++ G F + ++L E+I + K T A
Sbjct: 218 LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWA 274
Query: 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380
VP + L + +
Sbjct: 275 VP----PALNVL-------------------------VNTLE------SSNKTYDWS--- 296
Query: 381 QSFGGRVRLILSGAAPLTPHV-ETFLRVVAC------AHVLQGYGLTETCAGTFVSLPNE 433
+++ +GA P+ P + E L++ A Q +G+TE C + P
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 434 MSMIGTVGPPVPNVDVCL------ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ T G P+ ++++ + + E GE+ ++G +F GY+KRE
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE--------SGEIVIRGPNIFKGYWKREKE 403
Query: 488 TKEVMV-----DGWFHTG 500
+E +F TG
Sbjct: 404 NQECWWYDEKGRKFFRTG 421
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 1e-57
Identities = 95/489 (19%), Positives = 169/489 (34%), Gaps = 94/489 (19%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
++RS IP + + + L ++G G TY +V
Sbjct: 8 IFRSKLP----DIYIPKNLPLHSYVLENLSNHSSKPCL-----INGANGDVY--TYADVE 56
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+V + + G+++ ++ + PE+++ + G +
Sbjct: 57 LTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
S + + ++ ++ +K + S + E
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARES--DVKVMCVDSAPDG------------CLHFSEL 162
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265
Q EN + +D+ + Y+SGTTG PKGVM++++ ++T +A ++ N
Sbjct: 163 TQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVD-GDNPNLYF 220
Query: 266 TSEDVYVSYLPLAHIF-DRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCA 320
SEDV + LP+ HI+ +I + GA I F ++ LL I + K +I
Sbjct: 221 HSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPV 277
Query: 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380
VP + + K P DK
Sbjct: 278 VP----PVMMSIA-----------------------------KS----PDLDKHDLS--- 297
Query: 381 QSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM--- 436
+R+I SG APL + +T A + QGYG+TE + L
Sbjct: 298 -----SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDI 352
Query: 437 -IGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G G V N + V E+ + + GE+C++G + GY + T +
Sbjct: 353 KPGACGTVVRNAEMKIVDPETGASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTI 407
Query: 493 -VDGWFHTG 500
+GW HTG
Sbjct: 408 DKEGWLHTG 416
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 4e-57
Identities = 82/461 (17%), Positives = 142/461 (30%), Gaps = 98/461 (21%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
DV+R P+ + T+++ ++ + + GV +
Sbjct: 10 DVYRRNAALFPDRTAFMVDGVRL-----------THRDYLARAERLASGLLRDGVHTGDR 58
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165
I NC E I + A +G +P+ L A + F++ S+ +
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118
Query: 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDIC 225
P +K + G + F L + F P D
Sbjct: 119 GVLPSLG-GVKKAYAI--------------GDGSGPFAPFKDLASDTPFSAPEFGAADGF 163
Query: 226 TIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI 285
I++T+ G P+G ++S N++ + + LT DV + LPL H+ +
Sbjct: 164 VIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGL 218
Query: 286 EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
G A D DI K T+ +L I L+Q
Sbjct: 219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI---LDQ---------- 265
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
A + +L+ + P T +E F
Sbjct: 266 -----AAPAQLASLR-----------------------------AVTGLDTPET--IERF 289
Query: 405 LRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEY 459
A +G +ET + + + + G P+ V + +P E
Sbjct: 290 EATCPNATFWATFGQSETSGLSTFAPYRD--RPKSAGRPLFWRTVAVVDAEDRPLPPGE- 346
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ ++G TVF GY+ T+ +GW HTG
Sbjct: 347 -------VGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTG 380
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-56
Identities = 93/490 (18%), Positives = 174/490 (35%), Gaps = 90/490 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
+ + P+ + + A++R G D + TY E +
Sbjct: 7 IKKGPAP----FYPLEDG-TAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYF 57
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
++ +++ A++ G+ + + N ++ + + +G+ P D +
Sbjct: 58 EMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNS 117
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
+ S ++ FV +K + ++L K K I+ SK + S F
Sbjct: 118 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ----------GFQSMYTF 167
Query: 206 LQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+ F+ + I IM +SG+TG PKGV + + + + +
Sbjct: 168 VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF 227
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKP 315
++ + +S +P H F ++ G + F + +L L + + K
Sbjct: 228 G--NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLRSLQDYKI 282
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
VP ++S + S + DK
Sbjct: 283 QSALLVPT----LFSFFAK---------------------------------STLIDK-- 303
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+D + I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 304 YDL------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGD 356
Query: 435 SMIGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G VG VP + V L++ + + RGE+CV+G + SGY + T +
Sbjct: 357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNAL 411
Query: 492 MV-DGWFHTG 500
+ DGW H+G
Sbjct: 412 IDKDGWLHSG 421
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 2e-56
Identities = 87/467 (18%), Positives = 156/467 (33%), Gaps = 95/467 (20%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ + R +P + V+ + TY ++ L + + + G+ +
Sbjct: 15 MKNIGWMLRQRATVSPRLQAY-----VEPSTDVRM--TYAQMNALANRCADVLTALGIAK 67
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + N E+ LG VP+ L A V FI+ SG + P
Sbjct: 68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ + T+ + S E L+ + + +
Sbjct: 128 -VIDAIRAQADPPGTVTD---------------WIGADSLAERLRSAAADEPAVECGG-D 170
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D IMYTSGTTG PKGV+ ++E++ + + + D + LP+ H+
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHS-----AASSWASTIDVRYRDRLLLPLPMFHVAA 225
Query: 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
G + D + I E + I AVP +L+ +
Sbjct: 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMR------------ 273
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
P ++ R ++G AP+ +
Sbjct: 274 -------------------------QVPEFAELDAPDF--------RYFITGGAPMPEAL 300
Query: 402 ETFLRVVA--CAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCL-----ES 453
+++ A V+QGY LTE+C G + L + + G+ G DV +
Sbjct: 301 ---IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVI 357
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
E GEV +K + Y+ R + T++ +GWF TG
Sbjct: 358 REHGE---------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 395
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 1e-55
Identities = 78/459 (16%), Positives = 147/459 (32%), Gaps = 89/459 (19%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG- 104
++N ++ + GQ TY+ +Y + ++ +
Sbjct: 5 FWLYKQAQQNGHHIAITDGQESY-----------TYQNLYCEASLLAKRLK----AYQQS 49
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
+ G+Y N + II + AC + + L + + V + F +
Sbjct: 50 RVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCT----LPL 105
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224
+ + + + S + + +DI
Sbjct: 106 ELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDI 165
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284
+IM+TSGTTG K V + N + + + ++S LP+ HI +
Sbjct: 166 ASIMFTSGTTGPQKAVPQTFRNHYA-----SAIGCKESLGFDRDTNWLSVLPIYHISGLS 220
Query: 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343
+ + G + + + +L I + T VP+ + L Q
Sbjct: 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQT----LNWLMQ--------- 267
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-E 402
E ++ IL G A L+ + E
Sbjct: 268 ------------------QGLHEPY-----------------NLQKILLGGAKLSATMIE 292
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDA 461
T L+ + +G+TETC+ + P + TVG P NVDV +++ +
Sbjct: 293 TALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEG--- 347
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ +KG+ V +GY D +G+F+TG
Sbjct: 348 -----HGELMIKGANVMNGYLYPTD-LTGTFENGYFNTG 380
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 5e-54
Identities = 103/491 (20%), Positives = 171/491 (34%), Gaps = 90/491 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
++RS IP S D + L ++G G TY +V+
Sbjct: 47 IFRSKLP----DIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVH 95
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+ ++ GV + + NCPE+++ A + G +
Sbjct: 96 VISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
S + E + + ++ + + E + E
Sbjct: 156 AKASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESVPIPE-------GCLRFTEL 206
Query: 206 LQLGENKQFDLPVKK--KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263
Q + + +D+ + Y+SGTTG PKGVM++++ +VT +A E+ N
Sbjct: 207 TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD-GENPNL 265
Query: 264 KLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIF 318
S+DV + LP+ HI+ +I + GAAI F ++ LLLE I K T+
Sbjct: 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVA 322
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
VP I + K +K +D
Sbjct: 323 PMVP----PIVLAIA-----------------------------KS----SETEK--YDL 343
Query: 379 VKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM- 436
+R++ SGAAPL + + A + QGYG+TE +SL
Sbjct: 344 ------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 397
Query: 437 ---IGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
G G V N + V ++ + + GE+C++G + GY T E
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ-----PGEICIRGHQIMKGYLNNPAATAE 452
Query: 491 VM-VDGWFHTG 500
+ DGW HTG
Sbjct: 453 TIDKDGWLHTG 463
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 7e-53
Identities = 89/433 (20%), Positives = 153/433 (35%), Gaps = 93/433 (21%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E+ +V N + G++ + E ++ A G +PL
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+++ I + I + K + K ++T+
Sbjct: 90 HELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG----------------PDGR 133
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
S + F + +D+ I+YTSGTTG KG M+S++N+ + L++
Sbjct: 134 GSLTDAAAGASE-AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLA---SNSLTLVD 189
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVF---ISNGAAIGFWRG-DVKLLLEDIGELKP 315
+ T +DV + LP+ H + + ++ F D +L+ + +
Sbjct: 190 YW--RFTPDDVLIHALPIYHTH--GLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RA 243
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
T+ VP Y+ L Q SP K
Sbjct: 244 TVLMGVPT----FYTRLLQ---------------------------------SPRLTKET 266
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
G +RL +SG+APL + A VL+ YG+TET T + +
Sbjct: 267 T--------GHMRLFISGSAPLLADTHREWSAKTGHA-VLERYGMTETNMNTS-NPYDGD 316
Query: 435 SMIGTVGPPVPNVDVCL------ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ G VGP +P V + + +P + G + VKG VF GY++ + T
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGKELPRGD--------IGMIEVKGPNVFKGYWRMPEKT 368
Query: 489 KEVMV-DGWFHTG 500
K DG+F TG
Sbjct: 369 KSEFRDDGFFITG 381
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 9e-52
Identities = 75/470 (15%), Positives = 143/470 (30%), Gaps = 98/470 (20%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ ++ R A R P++ L G + T+ E+ V V + G+
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL-----AVPARGLRL--THAELRARVEAVAARLHADGLRP 53
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + + N + +I + A + LG L L + + +I ++ A +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG--R 111
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ ++ + I + + P ++
Sbjct: 112 QVADAIFQSGSGARIIF------------------LGDLVRDGEPYSYGPPIEDPQREPA 153
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I YTSGTTG PK ++ + + + V + +V + +PL H+
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 283 -RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
A+ ++ L+ + + + T A P
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP------------------ 252
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
T + + A+ +R + A +
Sbjct: 253 ----THLDA---------------LAAAAAHAGSSLK------LDSLRHVTFAGATMPDA 287
Query: 401 V-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-------- 451
V ET + + + YG TE ++ P GT P +V +
Sbjct: 288 VLETVHQHLPGE-KVNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRIVRIGGGVD 342
Query: 452 ESVPEMEYDALSSTPRGEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTG 500
E V E GE+ V S + F GY + T E + DGW+ T
Sbjct: 343 EIVANGE--------EGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 2e-51
Identities = 74/432 (17%), Positives = 135/432 (31%), Gaps = 81/432 (18%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + + +A+RT GV + + ++ + G+ V L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+++ HS + + + EH + S+ + +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESEPR-------LA 161
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCL 257
++E + +DI +Y+SG+TG PKG + ++ N+ + L
Sbjct: 162 PLFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF-ISNGAAIGFWRG--DVKLLLEDIGELK 314
+ DV S L + F +S GA + + E +
Sbjct: 221 ------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHR 274
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
PT+F VP TL+
Sbjct: 275 PTVFYGVP----------------------TLYANMLVS--------------------- 291
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+ +R+ S L + E F C +L G G TE F+S
Sbjct: 292 --PNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLH-IFLSNRAG 347
Query: 434 MSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
GT G PVP ++ L +VP+ E G++ +KG + Y+ + +
Sbjct: 348 AVEYGTTGRPVPGYEIELRDEAGHAVPDGE--------VGDLYIKGPSAAVMYWNNREKS 399
Query: 489 KEVMVDGWFHTG 500
+ + W +G
Sbjct: 400 RATFLGEWIRSG 411
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-49
Identities = 90/432 (20%), Positives = 137/432 (31%), Gaps = 105/432 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ I G+ ++ E + + A G+ VPL G
Sbjct: 50 TYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGD 104
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ I+ S S+ P+ L
Sbjct: 105 KELAHILSDSAPSLVLAP----------------------------PDAELPPALGALER 136
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
D + D ++YTSGTTG PKG ++ + + L +
Sbjct: 137 VDVD----VRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALA---TTLDALAD 189
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---------DVKLLLEDI 310
+ + T EDV V LPL H+ + G RG + ++
Sbjct: 190 AW--QWTGEDVLVQGLPLFHVHG-------LVLGILGPLRRGGSVRHLGRFSTEGAAREL 240
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+ T+ VP +Y + + + + L K L
Sbjct: 241 ND-GATMLFGVPT----MYHRIAETLPADPELAKAL------------------------ 271
Query: 371 ADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVS 429
RL++SG+A L H E V++ YG+TET T V
Sbjct: 272 --------------AGARLLVSGSAALPVHDHERIAAATGRR-VIERYGMTETLMNTSVR 316
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
E GTVG P+P V++ L AL GE+ V+G +F+ Y R D T
Sbjct: 317 ADGE-PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATA 375
Query: 490 EVMV-DGWFHTG 500
DG+F TG
Sbjct: 376 AAFTEDGFFRTG 387
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 63/485 (12%), Positives = 141/485 (29%), Gaps = 127/485 (26%)
Query: 47 WDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104
+ + V+ +P++ + G+R++ +Y E+ L + + G+ +
Sbjct: 33 TRILTVGVQSHPHSLAIICGERQL-----------SYIELDRLSTNLATRLAEKGLGKGD 81
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----K 160
+ N E+ I A G+ + + + I + +
Sbjct: 82 TALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS 141
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ + + + I+ + + + ++++ D
Sbjct: 142 NNQFIDSLHDVNLSPEIILMLNHQATD------------FGLLDWIETPAETFVDFSSTP 189
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+++ + G+TG PK + ++ + + C L S + LP
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAP 242
Query: 279 HIFDRAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLDRIY 329
H F + S GA G + I + + VP
Sbjct: 243 HNF------MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVP------- 289
Query: 330 SGLNQKISSGGLLKKTLFNI------AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
+ + Y + +LK V + + + +V +
Sbjct: 290 ---------------SAVIMWLEKAAQYKDQIQSLKLL--QVGGASFPES-LARQVPEVL 331
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTFVSLPNEMSMIGTVGP 442
+ + Q +G+ E T + +E + T G
Sbjct: 332 NCK--------------------------LQQVFGMAEGLVNYTRLDDSDEQ-IFTTQGR 364
Query: 443 PVPN------VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG 495
P+ + VD VPE E G + +G F GYY+ + +V D
Sbjct: 365 PISSDDEIKIVDEQYREVPEGE--------IGMLATRGPYTFCGYYQSPEHNSQVFDEDN 416
Query: 496 WFHTG 500
++++G
Sbjct: 417 YYYSG 421
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 8e-35
Identities = 63/440 (14%), Positives = 130/440 (29%), Gaps = 94/440 (21%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y+E+ + ++R G++ + N E I A LG+ V +
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ ++ + + + +F R
Sbjct: 112 SELNAYASQIEPALLIADRQH---------ALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCL 257
++ + + F +++ + GTTG PK + ++ + + C
Sbjct: 163 HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC- 220
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---------DVKLLLE 308
+ T + Y+ +P AH + S G+ F G L
Sbjct: 221 ------QFTQQTRYLCAIPAAHNY------AMSSPGSLGVFLAGGTVVLAADPSATLCFP 268
Query: 309 DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368
I + + + VP S Q + G + +LK V +
Sbjct: 269 LIEKHQVNVTALVP----PAVSLWLQALIEGE----------SRAQLASLKLL--QVGGA 312
Query: 369 PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTF 427
++ + ++ G + + Q +G+ E T
Sbjct: 313 RLSAT-LAARIPAEIGCQ--------------------------LQQVFGMAEGLVNYTR 345
Query: 428 VSLPNEMSMIGTVGPPV-PNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+ E +I T G P+ P+ +V + +P+ E G + +G F GY
Sbjct: 346 LDDSAEK-IIHTQGYPMCPDDEVWVADAEGNPLPQGE--------VGRLMTRGPYTFRGY 396
Query: 482 YKREDLTKEVM-VDGWFHTG 500
YK +G++ +G
Sbjct: 397 YKSPQHNASAFDANGFYCSG 416
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 73/484 (15%), Positives = 147/484 (30%), Gaps = 129/484 (26%)
Query: 47 WDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104
D+ R + + + G +Y+E+ ++ + G++++
Sbjct: 28 GDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----K 160
+ + N E+ + A LG V + + + + + + + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPV 218
+ + LK I+ + +EFL L + + LP
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGE------------------AEEFLPLEDLHTEPVKLPE 178
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLP 276
K +D+ + + G+TG K + ++++ + + C L VY++ LP
Sbjct: 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALP 231
Query: 277 LAHIFDRAIEEVF--ISNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYS 330
+AH + + V + G + I K TI VP
Sbjct: 232 MAHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVP-------- 280
Query: 331 GLNQKISSGGLLKKTLFNI------AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFG 384
L + + +L+ V + + + +VK FG
Sbjct: 281 --------------PLAMVWMDAASSRRDDLSSLQVL--QVGGAKFSAE-AARRVKAVFG 323
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPP 443
+ Q +G+ E T + P E+ + T G P
Sbjct: 324 CTL--------------------------QQVFGMAEGLVNYTRLDDPEEII-VNTQGKP 356
Query: 444 V-PNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGW 496
+ P + + V E G + +G GYYK E+ DG+
Sbjct: 357 MSPYDESRVWDDHDRDVKPGE--------TGHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 497 FHTG 500
+ TG
Sbjct: 409 YRTG 412
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-30
Identities = 66/463 (14%), Positives = 131/463 (28%), Gaps = 124/463 (26%)
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGL 128
GK + ++E+ + + N + CG++ + + PEW + + C GL
Sbjct: 68 KGKELMW---NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 129 HCVPLYDTLGAGAVEFIICHSGVSIAFVEE---KKIPEMLKTFPKTTEHLKTIVSFSKVK 185
+P + + + + + S + +++ + P L+ + S+
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP----SLRIKLLVSEKS 180
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
+ ++ + L + + I +TSGT+G PK S
Sbjct: 181 CD----------GWLNFKKLLN-EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDV--------------YVSYLPLAHIFDRAIEEVFIS 291
++ L + D+ P A
Sbjct: 230 SLGLKAKMDAGWT-----GLQASDIMWTISDTGWILNILCSLMEPWAL------------ 272
Query: 292 NGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348
GA D ++L+ + P V R +L + +
Sbjct: 273 -GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVY-R-------------MLLQQDLS 317
Query: 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRV 407
SYKF +L + ++ L P E +
Sbjct: 318 ---SYKFPHL-----------------------------QNCVTVGESLLPETLENWRAQ 345
Query: 408 VACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDAL 462
+ + YG TET T + G +G DV + +P
Sbjct: 346 TGLD-IRESYGQTETGL-TCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT---- 399
Query: 463 SSTPRGEVCVKGSTV-----FSGYYKREDLTKEVMVDGWFHTG 500
G++ ++ + FSGY D T + ++ G
Sbjct: 400 ----EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLG 438
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-29
Identities = 102/484 (21%), Positives = 168/484 (34%), Gaps = 145/484 (29%)
Query: 64 GQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122
G++E+V G+ TY EVY +++ +R GV + G N +EA
Sbjct: 32 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH---LEA 88
Query: 123 CNALGLHCVPLYDTLGAGAV-------------EFIICHSGVSIAFVEEKKIPEMLKTFP 169
A VP G GAV +I+ H+ + + +P +++
Sbjct: 89 YFA-----VP-----GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLP-LVEAIR 137
Query: 170 KTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMY 229
+ ++ V + PE +++E L E +P + C + Y
Sbjct: 138 GELKTVQHFVVMDEKAPE----------GYLAYEEALG-EEADPVRVP---ERAACGMAY 183
Query: 230 TSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
T+GTTG PKGV+ S+ +V + A L++ L+ +DV + +P+ H+
Sbjct: 184 TTGTTGLPKGVVYSHRALVLHSLAA---SLVDGTA--LSEKDVVLPVVPMFHV------- 231
Query: 288 VFISNG-----AAIGFWRG----------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
N AA G D L+E T VP V
Sbjct: 232 ----NAWCLPYAA--TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW------- 278
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
L ++E++ RL++
Sbjct: 279 ------LALAD--------------------YLESTG-----------HRLKTLRRLVVG 301
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GTFVSLPNEM---------SMIGTVGP 442
G+A + F R V QGYGLTET + + + ++ G
Sbjct: 302 GSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL 359
Query: 443 PVPNVDVCLESVPEMEYDALSSTPR-----GEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496
P+P V + + E P+ GEV +KG + GYY E+ T+ + DG+
Sbjct: 360 PIPLVRLRVAD-EEGR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 413
Query: 497 FHTG 500
F TG
Sbjct: 414 FRTG 417
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 85/470 (18%), Positives = 143/470 (30%), Gaps = 132/470 (28%)
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG-KCGIYGVNCPEWIIGMEACNALGL 128
G + T+K++ K N G+ +G + + ++ M + LG
Sbjct: 81 YGNEKIF---TFKDLKYYSDKAANFFVKHGIG-KGDYVMLTLKSRYDFWYCMLGLHKLGA 136
Query: 129 HCVPLYDTLGAGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
VP L + + I +G+ I + E +PE + + +
Sbjct: 137 IAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVK----KKNDICTIMYTSGTTGDPKGVMVS 243
+ + + L+ + F+ P K DIC + ++SGT G PK V
Sbjct: 197 EGW---------IDFRKELE-ESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHD 246
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVY-----------VSYL---PLAHIFDRAIEEVF 289
N + I K + + ++ V
Sbjct: 247 NTYPLGHILTAKYWQN-----VEDDGLHYTVADSGWGKCVWGKLYGQWI----------- 290
Query: 290 ISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVP---RVLDRIYSGLNQKISSGGLLK 343
G A+ + + K +LE + T FCA P R L I L+
Sbjct: 291 --AGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL--IKEDLSH--------- 337
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-E 402
Y F L + + PL P V
Sbjct: 338 ---------YNFSTL-----------------------------KYAVVAGEPLNPEVFN 359
Query: 403 TFLRVVACAHVLQGYGLTETCA--GTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVP 455
FL +++G+G TET TF + + G++G P P + L
Sbjct: 360 RFLEFTGIK-LMEGFGQTETVVTIATFPWMEPK---PGSIGKPTPGYKIELMDRDGRLCE 415
Query: 456 EMEYDALSSTPRGEVCVKGST-----VFSGYYKREDLTKEVMVDGWFHTG 500
E GE+ + +F Y K + T+E DG++HTG
Sbjct: 416 VGE--------EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG-KC 106
R P++ + G + T+ ++Y + V + CG G +
Sbjct: 28 AALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG--STGDRV 85
Query: 107 GIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVE---FIICHSGVSIAFVEEKKIPE 163
I E+++ G VPL G E ++ S + +
Sbjct: 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDD 145
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
+++ + ++ D L L + +
Sbjct: 146 VVQHV--------------------ARRPGESPPSIIEVDL-LDLDAPNGYTFKEDEYPS 184
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+ YTSG+T P GV++S++N+ + + VS+LP H
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 9e-09
Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 43/157 (27%)
Query: 385 GRVRLILSGAAPLTPH-VETFLRVVAC----AHVLQ-GYGLTETCAGTFVSLPNEMSMIG 438
G + ILSG+ + ++ F A V++ Y L E +V+
Sbjct: 311 GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT--VYVATSKPGQPPE 368
Query: 439 TV---------GPPVPNVD------VCLESVPEMEY---DALSSTPR-----GEVCVKGS 475
TV G P + D+ + GE+ V G
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGD 428
Query: 476 TVFSGYYKREDLTKEVMV------------DGWFHTG 500
V +GY+++ D ++ W TG
Sbjct: 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 61/287 (21%), Positives = 103/287 (35%), Gaps = 81/287 (28%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSGTTG+PKG M+ ++ I + L +T +D + ++ FD ++
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-----VTEKDRIGQFASIS--FDASVW 239
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
E+F + GA++ D + I + + T+ P
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP------------------ 281
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
T + +++ LI +G+A
Sbjct: 282 ----TYVVHLDPERILSIQ----------------------------TLITAGSATSPSL 309
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPN-----VDVCLES 453
V + V + YG TET CA T+V+ + +G P+ N VD L+
Sbjct: 310 VNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 366
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+C+ G + GY+KR +LT + VD F G
Sbjct: 367 KSV-------GEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 33/235 (14%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
DV R+ +PN + ++ + + + TY+++ + ++ G + +
Sbjct: 15 DVVRLRALHSPNKKSC---TFLNKELEETM--TYEQLDQHAKAIAATLQAEGAKPGDRVL 69
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVE---FIICHSGVSIAFVEEKKIPEM 164
+ I C G VP+Y ++ I+ +S I + I +
Sbjct: 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224
T + + + ++L + + K NDI
Sbjct: 130 TADELNTNPKFL-------------------KIPAIALES-IELNRSSSWQPTSIKSNDI 169
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ YTSG+T PKGVMVS+ N++ + + + E + S+LP H
Sbjct: 170 AFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH-----MNDETIIFSWLPPHH 219
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 55/162 (33%)
Query: 385 GRVRLILSGAAPLTPH-VETFLRVVAC----AHVLQ-GYGLTETCAGTFVSLPNEMSMIG 438
+GA P+ +E F + YGL E P
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTL 348
Query: 439 TV--------------------------GPPVPNVDVCLESVPEMEYDALSSTPR----- 467
T+ G P+ V + D + P
Sbjct: 349 TLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKII---------DPDTLIPCDFDQV 399
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV---------DGWFHTG 500
GE+ V+ ++V GY+ + + T+ + TG
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-13
Identities = 60/281 (21%), Positives = 96/281 (34%), Gaps = 83/281 (29%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
IMYTSGTTG PKG + ++ NI + V + + +D ++S A FD
Sbjct: 612 IMYTSGTTGKPKGNITTHANIQGLVKHVDYM------AFSDQDTFLSVSNYA--FDAFTF 663
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+ + + N A + D + L + I + + A
Sbjct: 664 DFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATT------------------ 705
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ F+ L +A G ++ G PH
Sbjct: 706 -----------AL-FNLL------TDAGE-----------DWMKGLRCILFGGERASVPH 736
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
V LR++ ++ YG TE A T + + I ++ G P+ N ++
Sbjct: 737 VRKALRIMGPGKLINCYGPTEGTVFA-TAHVVHDLPDSISSLPIGKPISNASVYILNEQS 795
Query: 452 ESVPEMEYDALSSTP--RGEVCVKGSTVFSGYYKREDLTKE 490
+ P GE+C+ G V GY R DLTKE
Sbjct: 796 QLQP----------FGAVGELCISGMGVSKGYVNRADLTKE 826
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 6e-13
Identities = 55/278 (19%), Positives = 93/278 (33%), Gaps = 77/278 (27%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I ++SGTTG PK + ++ I G L + ++ PL+ FD A
Sbjct: 169 INFSSGTTGRPKAIACTHAGITRLCLGQSFL------AFAPQMRFLVNSPLS--FDAATL 220
Query: 287 EVFIS--NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
E++ + NG +L D+G L P + +++ +
Sbjct: 221 EIWGALLNGG---------CCVLNDLGPLDPGVLR---QLIGE------RGA-------- 254
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
+ S F+ L V+ P GG +L+ G PHV
Sbjct: 255 DSAWLTASL-FNTL------VDLDP-----------DCLGGLRQLLTGGDILSVPHVRRA 296
Query: 405 LRVVACAHVLQGYGLTETCAGTFVS---LPNEMSMIGTV--GPPVPN-----VDVCLESV 454
L H++ GYG TE TF + ++ + G + +D + +
Sbjct: 297 LLRHPRLHLVNGYGPTENT--TFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354
Query: 455 PEMEYDALSSTP--RGEVCVKGSTVFSGYYKREDLTKE 490
E P GE+ G+ + GY T+
Sbjct: 355 AE---------PDRAGEIVAFGAGLAQGYRNDAARTRA 383
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 9e-13
Identities = 52/279 (18%), Positives = 90/279 (32%), Gaps = 72/279 (25%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I++TSGTTG PKGV +S++N+++F ++E + + ++ P + FD ++
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FDLSVM 204
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++ G + D K L I +L I+ + P S + + S
Sbjct: 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTP-------SFADMAMLSDD 257
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ + L G
Sbjct: 258 FCQAKM---------PALT----------------------------HFYFDGEELTVST 280
Query: 401 VETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGP---PVPN-----VDVCL 451
A ++ YG TE + + + EM T P P P+ +D
Sbjct: 281 ARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDG 340
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ + S GE+ V G V GY + T E
Sbjct: 341 KELS-------SGEQ-GEIIVTGPAVSKGYLNNPEKTAE 371
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 42/279 (15%), Positives = 85/279 (30%), Gaps = 74/279 (26%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I+YTSG+TG+PKGV ++ +V+F L + V+++ P + FD ++
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-----LQTGQVFLNQAPFS--FDLSVM 201
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+++ + G + K L + + ++ + P S +
Sbjct: 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTP-------SFAEMCLMEAS 254
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ L N+K + G
Sbjct: 255 FSESML---------PNMK----------------------------TFLFCGEVLPNEV 277
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
+ A ++ YG TE + ++ G + +
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
P+ GE+ + G +V GY +LT++
Sbjct: 338 TIAPD-------GEK-GEIVIVGPSVSVGYLGSPELTEK 368
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 3e-12
Identities = 46/279 (16%), Positives = 97/279 (34%), Gaps = 74/279 (26%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I+YTSG+TG+PKGV +S N+ +F + ++ ++++ P + FD ++
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFP-----VSGGKIFLNQAPFS--FDLSVM 200
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+++ + +G + K+L E++ + ++ + P S + + G
Sbjct: 201 DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTP-------SFVQMCLMDPG 253
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ L + + G
Sbjct: 254 FSQDLL---------PHAD----------------------------TFMFCGEVLPVSV 276
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
+ L A + YG TE + + +S ++ G P+ +D
Sbjct: 277 AKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEG 336
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ +PE GE+ + G +V GY +LT++
Sbjct: 337 QPLPE-------GEK-GEIVIAGPSVSRGYLGEPELTEK 367
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 61/293 (20%), Positives = 89/293 (30%), Gaps = 72/293 (24%)
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK---LTSEDVYV 272
L +N ++YTSG+TG PKGV VS N+ +F L+ +V K L ++
Sbjct: 169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFL 228
Query: 273 SYLPLAHIFDRAIEEVF--ISNGAAIGFWRGDVKL--LLEDIGELKPTIFCAVPRVLDRI 328
A FD I E+F G L L EL T VP
Sbjct: 229 CLASRA--FDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP------ 280
Query: 329 YSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388
S L+Q +L
Sbjct: 281 -SLLDQTGLVPEDA-------------PHLV----------------------------Y 298
Query: 389 LILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV- 447
L + G + + A ++ YG TE G S +G P+ +
Sbjct: 299 LGVGGEKMTPRTQQIWSSSDRVA-LVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSV 357
Query: 448 -----DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
E V + GE+ ++GS V +GY R D ++G
Sbjct: 358 AHVLAPGSNEHVKK-------GMA-GELVIEGSLVANGYLNRPDAKGFCDING 402
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 7e-08
Identities = 39/294 (13%), Positives = 75/294 (25%), Gaps = 50/294 (17%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHI 280
+ + + GTTG PK V+ + I I+ + ++ +P HI
Sbjct: 91 DSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRP--GRPSGNTLAAIPTGPHI 148
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+E + G D + + + E V + + ++Q ++
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTA---TVRKYTHHL---VDQVQNTLM 202
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ + + + I G L
Sbjct: 203 NQDIRFLVTTPPV-------------LRELLKRPEVVLQMKQ---SLAQITLGGTELNLD 246
Query: 401 VETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVC------LE 452
F+ ++ YG T + L S P + +
Sbjct: 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQ 306
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFS------GYYKREDLTKEVMVDGWFHTG 500
+V E RG V V T S +R+ + V G+
Sbjct: 307 TVEYGE--------RGNVIV---THLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 54/420 (12%), Positives = 114/420 (27%), Gaps = 154/420 (36%)
Query: 23 IGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVW-KTY 81
I P + S D + S R ++ P L ++ V
Sbjct: 209 IDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLN-----VQNAKA 258
Query: 82 KEVYDL------------VIKVVNAIRTC---------GVEERGKCGIYG--VNC----- 113
++L V ++A T + + ++C
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE 173
P E P +SI I E ++ T +
Sbjct: 319 PR-----EVLT-----TNPRR----------------LSI-------IAESIRDGLATWD 345
Query: 174 HLKTI----------VSFSKVKP-EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
+ K + S + ++P E R+ ++ L+V+ +P
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVFPPSA----------HIPTI--- 390
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+ ++++ D V+ L+E ++ T +P ++
Sbjct: 391 -LLSLIWFDVIKSDVMVVVNKLHK--------YSLVEKQPKEST------ISIPSIYL-- 433
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGEL-KPTIFCAVPRVLDRIYSGLNQKISSGGL 341
++K+ LE+ L + ++D Y+ + + S L
Sbjct: 434 -------------------ELKVKLENEYALHR--------SIVDH-YN-IPKTFDSDDL 464
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI-VFDKVKQSFG-GRVRLILSGAAPLTP 399
+ L Y Y GH H++ +++ +F V F ++ A
Sbjct: 465 IPPYLDQ--YFYSH----IGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.97 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.97 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 97.22 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.08 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 96.88 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 93.34 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.66 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 92.6 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 90.01 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 84.73 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 83.68 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 83.12 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-59 Score=493.04 Aligned_cols=399 Identities=21% Similarity=0.278 Sum_probs=333.7
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCC--CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh
Q 010532 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (508)
Q Consensus 38 ~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~ 115 (508)
....+..|+.++|+++++++||++|+++. +.. .+..+++||+||.++++++|+.|++.|+++||+|+|+++|+++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~ 89 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID 89 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Confidence 33455689999999999999999999987 421 2334689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhc
Q 010532 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (508)
Q Consensus 116 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~ 195 (508)
+++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .+..++..+..
T Consensus 90 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------- 156 (549)
T 3g7s_A 90 YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE----------- 156 (549)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS-----------
T ss_pred HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC-----------
Confidence 99999999999999999999999999999999999999999988777665554333 25566655432
Q ss_pred CcEEeeHHHHHHcccCCCCCCCCCC-CCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 196 GLAVYSWDEFLQLGENKQFDLPVKK-KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
..+++++........ ...... ++++++|+|||||||.||||+++|+++.+.+..+...+ ++.+.|++++.
T Consensus 157 ---~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~ 227 (549)
T 3g7s_A 157 ---VNSLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGC 227 (549)
T ss_dssp ---SSCHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECC
T ss_pred ---CcCHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEe
Confidence 235666665543322 222333 38999999999999999999999999999988865554 78899999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 275 LPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+........
T Consensus 228 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------- 292 (549)
T 3g7s_A 228 MPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT--------------- 292 (549)
T ss_dssp SCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC---------------
T ss_pred CcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc---------------
Confidence 999999998887788999999999876 9999999999999999999999999987754332100
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHH----hC---CceEeccCcccCCcce
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTETCAGT 426 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~~~~~ 426 (508)
...+++|.+++||+++++++.+.+.+. ++ +.+++.||+||+++++
T Consensus 293 ----------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 344 (549)
T 3g7s_A 293 ----------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV 344 (549)
T ss_dssp ----------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEE
T ss_pred ----------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhh
Confidence 011479999999999999999999887 56 8999999999999888
Q ss_pred eccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc---ccC--ceecCc
Q 010532 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WFHTGC 501 (508)
Q Consensus 427 ~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f---~~g--w~~TGD 501 (508)
+..........+++|+|+++++++|+|.+++.+++. |+.|||+|+||+++.||||+|+.|.+.| .+| ||+|||
T Consensus 345 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGD 422 (549)
T 3g7s_A 345 TTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGV--GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGD 422 (549)
T ss_dssp EECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECT--TCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEE
T ss_pred hcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCC--CCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCc
Confidence 777665545568999999999999999556665554 5899999999999999999999999998 678 999999
Q ss_pred ccccc
Q 010532 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|+++
T Consensus 423 l~~~~ 427 (549)
T 3g7s_A 423 VGFID 427 (549)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99975
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=491.26 Aligned_cols=394 Identities=21% Similarity=0.279 Sum_probs=325.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.++|+++++++||++|+++. +. +..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 1236899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++.+++++++++++|++.+....+....... +.++.++.++.... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGC-SSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhC-CCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999988766555443322 45666766654321 013356
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
++++..... .....++++++|+|||||||.||||+++|+++........ ......+.++|++++.+|++|.++
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT---STTTTCCCTTCEEEECSCTTSHHH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh---hcccccCCCCCEEEEeccchhhhH
Confidence 555432211 1344678999999999999999999999999987665421 112236788999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 283 RAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
+...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------ 289 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG------------------------ 289 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC------------------------
Confidence 8767788999999999863 99999999999999999999999999876433221
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-------
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------- 433 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~------- 433 (508)
...+++|.+++||+++++++.+.+ +.+|+++++.||+||++++++......
T Consensus 290 ---------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 347 (541)
T 1v25_A 290 ---------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSE 347 (541)
T ss_dssp ---------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred ---------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCc
Confidence 112489999999999999999999 568999999999999998777654331
Q ss_pred ---cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
....+++|+|+++++++|+| ++++.++.+.++.|||+|+||+++.||||+|+.|.+.| .||||+|||+|+++
T Consensus 348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d 423 (541)
T 1v25_A 348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423 (541)
T ss_dssp HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc
Confidence 02247899999999999999 88887776555789999999999999999999999999 59999999999985
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-60 Score=496.00 Aligned_cols=406 Identities=20% Similarity=0.293 Sum_probs=326.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH
Q 010532 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 37 ~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~ 116 (508)
+..+....|+.++|.++++++||++|++... +...+ +++||+||.++++++|+.|++.|+++||+|+|+++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4444556899999999999999999987331 22111 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 117 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.++.++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CCcceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999999998777665543333 556777776553211
Q ss_pred cEEeeHHHHHHcccCCC-----C-CCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcE
Q 010532 197 LAVYSWDEFLQLGENKQ-----F-DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~-----~-~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
....++.++........ . +.....++++++|+|||||||.||||.++|+++...+......+ ....+.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 12345666665432211 1 11122457899999999999999999999999988876643321 1135778999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010532 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 271 ~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+..
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 299 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------- 299 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence 9999999999999888888999999999876 9999999999999999999999999886521
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCc-eEeccCcccCCcceec
Q 010532 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFV 428 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~ 428 (508)
..+.. ..+++|.+++||+++++++.+.+++.++.. +++.||+||+++.++.
T Consensus 300 --------------------~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 300 --------------------LIDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp --------------------GGGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred --------------------ccccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11111 124899999999999999999999999875 9999999999988777
Q ss_pred cCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..... ...+++|+|+|+++++|+|.+++..+ +.|+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 352 ~~~~~-~~~~~vG~~~~~~~~~i~d~~~~~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~ 427 (550)
T 3rix_A 352 TPEGD-DKPGAVGKVVPFFEAKVVDLDTGKTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427 (550)
T ss_dssp CCTTC-CCTTEEEEECTTCEEEEECTTTCCBC--CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred CCCCC-CCCCCcccccCCcEEEEEeCCCCcCC--CCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence 66544 34589999999999999994445444 456899999999999999999999999999 89999999999975
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-60 Score=494.36 Aligned_cols=411 Identities=21% Similarity=0.247 Sum_probs=332.4
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCC
Q 010532 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~ 101 (508)
.+..+|++..+...+|. ..++.++|.++++++||++|+++. ++. +++||+||.++++++|+.|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 44567777666554443 489999999999999999999864 322 5799999999999999999999999
Q ss_pred CCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEe
Q 010532 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (508)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~ 181 (508)
+||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.+..... .+ .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987666554432211 22 34444
Q ss_pred CCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhc
Q 010532 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (508)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~ 261 (508)
+.... ....++++...... ..+.....++++++|+|||||||.||||+++|+++.+.+....... ..
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~ 216 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NP 216 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SC
T ss_pred cCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cc
Confidence 43221 24556666654322 2233345789999999999999999999999999988876543211 11
Q ss_pred ccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhcc
Q 010532 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (508)
Q Consensus 262 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (508)
...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+..
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------- 289 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------- 289 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence 235778999999999999999966 6777999999999876 9999999999999999999999999876521
Q ss_pred ChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccC
Q 010532 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYG 418 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG 418 (508)
..+.. ..+++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus 290 ------------------------------~~~~~--------~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 290 ------------------------------DLDKH--------DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ------------------------------CGGGS--------CCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred ------------------------------ccccC--------CCccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 11111 124899999999999999999999988 899999999
Q ss_pred cccCCcceeccCC----CCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c
Q 010532 419 LTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493 (508)
Q Consensus 419 ~tE~~~~~~~~~~----~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~ 493 (508)
+||++++++.+.. .....++++|+|+++++++|+|.+++..++ .|+.|||+|+||+++.||||+|+.|.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLP--RNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCC--CCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 9999987665421 122345899999999999999944455554 55899999999999999999999999999 7
Q ss_pred cCceecCcccccc
Q 010532 494 DGWFHTGCPHLFL 506 (508)
Q Consensus 494 ~gw~~TGD~g~~~ 506 (508)
+|||+|||+|+++
T Consensus 410 ~g~~~TGDl~~~~ 422 (536)
T 3ni2_A 410 EGWLHTGDIGYID 422 (536)
T ss_dssp TSCEEEEEEEEEC
T ss_pred CCceEcccEEEEc
Confidence 9999999999975
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-59 Score=488.61 Aligned_cols=390 Identities=13% Similarity=0.150 Sum_probs=321.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH----HHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
|+++|++++|+++.++.+++.+++++++++++|++..... ...+...........++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111111111244556666554321
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.++...............++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123455554433332233455789999999999999999999999999999998865544 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 301 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--------------------- 301 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT---------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh---------------------
Confidence 9999874 6777999999999876 999999999999999999999999998763221
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
...++ +++|.+++||+++++++.+.+++.+++.+++.||+||++..+.........
T Consensus 302 ----------------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 302 ----------------YKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ----------------THHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ----------------ccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 11112 489999999999999999999999999999999999998655544333333
Q ss_pred cCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+ ++++++|+| +++++++. |+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|+++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 427 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT 427 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEEC
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEc
Confidence 347899996 899999999 88876655 4899999999999999999999999999 79999999999875
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-59 Score=483.26 Aligned_cols=389 Identities=22% Similarity=0.284 Sum_probs=318.1
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010532 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
..+...|+.++|+++++++||++|+++. +.. +++||+||.++++++|+.|++.|+++||+|+|+++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 83 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 83 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHH
Confidence 4567889999999999999999999875 322 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++....
T Consensus 84 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------- 147 (517)
T 3r44_A 84 LFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG--------------- 147 (517)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------
T ss_pred HHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------
Confidence 99999999999999999999999999999999999999987765554332211 11111111110
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.+.+.... ...+.....++++++|+|||||||.||||+++|+++.+.+..+...+ ++..+|++++.+|++
T Consensus 148 ~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 148 ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMF 221 (517)
T ss_dssp HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTT
T ss_pred cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchH
Confidence 012333333221 12233455789999999999999999999999999999988855544 788999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 279 ~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
|.+++...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+.....
T Consensus 222 ~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 279 (517)
T 3r44_A 222 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA---------------------- 279 (517)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH----------------------
T ss_pred HHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc----------------------
Confidence 99999876666569999999876 9999999999999999999999999887622111
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-ccc
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSM 436 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~ 436 (508)
....+++|.+++||+++++++.+.+++. ++.+++.||+||+++.++...... ...
T Consensus 280 -----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 335 (517)
T 3r44_A 280 -----------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRK 335 (517)
T ss_dssp -----------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTT
T ss_pred -----------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCcccccc
Confidence 1122589999999999999999999986 999999999999988776554433 344
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.+++|+|+++++++|+| +++..++.+ .|||+|+||+++.||||+|+.|.+.|.+|||+|||+|++.
T Consensus 336 ~~~~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 336 AGSAGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID 401 (517)
T ss_dssp TTCCBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEEC
T ss_pred CCCCCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEc
Confidence 58999999999999999 777666554 7999999999999999999999999999999999999975
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-58 Score=486.18 Aligned_cols=396 Identities=17% Similarity=0.167 Sum_probs=323.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
..++...++|+++++++||++|+++. +.. +..+++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45566669999999999999999986 432 33478999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH--HHHhhcCCCCCCCc-cEEEEeCCCChhhHHHHhhcCc
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~l-~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
|||+++|++++|+++.++.+++..++++++++++|++.+.. ..+....... +.+ ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999988754 3333332222 233 34555443211 1
Q ss_pred EEeeHHHHHHcccCCCCCC---CCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 198 AVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
....+.+.+.........+ ....++++++|+|||||||.||+|.++|.+++..+.... ...++.+++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAK-----YWQNVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHH-----TTSCCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHH-----HhhCCCCCceEEEe
Confidence 3556777665543322111 245789999999999999999999999999888776532 23467889999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHH
Q 010532 275 LPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (508)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
.|++|..+.+. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99998877765 677799999999874 38999999999999999999999999876410
Q ss_pred HHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccC
Q 010532 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (508)
... ...+++|.+++||+++++++.+.+++.+|+.+++.||+||+++.++...
T Consensus 335 --------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 000 1124899999999999999999999999999999999999987766554
Q ss_pred CCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec-----CcccccccCChhhhhhhcccCceecCccccc
Q 010532 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTGCPHLF 505 (508)
Q Consensus 431 ~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g-----~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~ 505 (508)
.. ...++++|+|+|+++++|+| ++++.++. |+.|||+|+| ++++.|||++|+.|.+.|.+|||+|||+|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~--g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEV--GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCCCCCC--CCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 43 33458999999999999999 88776655 4899999997 7899999999999999999999999999997
Q ss_pred c
Q 010532 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
+
T Consensus 463 d 463 (580)
T 3etc_A 463 D 463 (580)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=484.83 Aligned_cols=412 Identities=22% Similarity=0.281 Sum_probs=325.9
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCC
Q 010532 22 SIGPVYRSLFAKDGFPAPIPGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv 100 (508)
..+++|++..+....| ...++.+ +|.++++++ |++|+++. +.. +++||+||.++++++|+.|++.|+
T Consensus 7 ~~~~~~~~~~~~~~~p----~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 74 (548)
T 2d1s_A 7 DENIVVGPKPFYPIEE----GSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGL 74 (548)
T ss_dssp CTTSEECCCCSSCCCS----SCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTC
T ss_pred CcceEecCCCCCCCCC----CcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCC
Confidence 3446677665433222 2368999 899999999 99999863 222 579999999999999999999999
Q ss_pred CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEE
Q 010532 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180 (508)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~ 180 (508)
++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... +....++.
T Consensus 75 ~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (548)
T 2d1s_A 75 VVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVI 153 (548)
T ss_dssp CTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEE
T ss_pred CCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998776654432211 22445665
Q ss_pred eCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCC-----C-CCeEEEEeccCCCCCcceEEeehHHHHHHHhhh
Q 010532 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK-----K-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254 (508)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~ 254 (508)
++..... .....++++.........+..... + +++++|+|||||||.||||.++|+++...+...
T Consensus 154 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~ 224 (548)
T 2d1s_A 154 LDSKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHA 224 (548)
T ss_dssp TTCSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHH
T ss_pred eCCcccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHh
Confidence 5432100 012346666654321101111112 4 899999999999999999999999999888774
Q ss_pred hhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHH
Q 010532 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332 (508)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~ 332 (508)
...+ ....+.++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..+.+..
T Consensus 225 ~~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 301 (548)
T 2d1s_A 225 RDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301 (548)
T ss_dssp TCTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS
T ss_pred hchh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc
Confidence 4321 1136778999999999999999876 44556 9999999875 9999999999999999999999999886511
Q ss_pred HHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CC
Q 010532 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CA 411 (508)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~ 411 (508)
..+.. ..+++|.+++||+++++++.+.+++.+ ++
T Consensus 302 -------------------------------------~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 336 (548)
T 2d1s_A 302 -------------------------------------LLNKY--------DLSNLVEIASGGAPLSKEVGEAVARRFNLP 336 (548)
T ss_dssp -------------------------------------CGGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCS
T ss_pred -------------------------------------ccccc--------cccceeEEEEcCccCCHHHHHHHHHHcCCC
Confidence 01111 124899999999999999999999988 68
Q ss_pred ceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhh
Q 010532 412 HVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491 (508)
Q Consensus 412 ~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~ 491 (508)
.+++.||+||++++++..... ....+++|+|+|+++++|+|.+++..++ .|+.|||+|+||+++.||||+|+.|.+.
T Consensus 337 ~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 413 (548)
T 2d1s_A 337 GVRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLG--PNRRGEVCVKGPMLMKGYVNNPEATKEL 413 (548)
T ss_dssp CCEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred ceeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCC--CCCCeEEEECCHHHhhhhcCChHHhhhc
Confidence 899999999999877664433 2345899999999999999944555444 5689999999999999999999999999
Q ss_pred c-ccCceecCcccccc
Q 010532 492 M-VDGWFHTGCPHLFL 506 (508)
Q Consensus 492 f-~~gw~~TGD~g~~~ 506 (508)
| .+|||+|||+|+++
T Consensus 414 f~~~g~~~TGDl~~~~ 429 (548)
T 2d1s_A 414 IDEEGWLHTGDIGYYD 429 (548)
T ss_dssp BCTTSCEEEEEEEEEC
T ss_pred ccCCcEEEccCEEEEc
Confidence 9 79999999999975
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=484.20 Aligned_cols=386 Identities=15% Similarity=0.174 Sum_probs=313.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.++|+++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH----HHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
|+++|++++|+++.++.+++.++++.++++++|++..... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111011144555555443210
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
+.++.... ......+...++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 163 ---~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 163 ---FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp ---SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred ---hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 11111111 111122345779999999999999999999999999999888765544 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 7778999999999876 99999999999999999999999999876432211
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
...+++|.+++||+++++++.+.+++.+|+.+++.||+||++..+.........
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 112489999999999999999999999999999999999965433322211122
Q ss_pred cCCcccccccC-eeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 MIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~-~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+++ .+++|+| +++++++. |+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|+++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 418 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRDVKP--GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cCCCCCcccCCCceEEEEC-CCCCCCcC--CCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC
Confidence 34789999976 5899999 77776655 5899999999999999999999999999 79999999999985
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=474.33 Aligned_cols=381 Identities=20% Similarity=0.263 Sum_probs=315.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999864 2 689999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++.++++.++++++|++.+....+....... ..+..++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSL-GGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGC-SSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhccc-CCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999998877644444322 56667776654221 1
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010532 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
+.++...........+...++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222334456789999999999999999999999999999988865544 788999999999999999
Q ss_pred HHHHHHHH-HHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010532 282 DRAIEEVF-ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 282 g~~~~~~~-l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
++...+.+ +..|..+++..+++..+++.|+++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99886665 55555555555599999999999999999999999999876320
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCcccCCc
Q 010532 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s 439 (508)
.. ..+++|.++++|++ ++.+.+++.+ ++.+++.||+||++++++....... ..+
T Consensus 268 ------------~~--------~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PA--------QLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GG--------GGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------cc--------chhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 00 11379999999987 7788888887 8999999999999987776554322 256
Q ss_pred ccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 440 ~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+|+|+++++++|+| +++++++. |+.|||+|+||+++.|||++|+.|.+.|.+|||+|||+|+++
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~ 386 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC
T ss_pred ccccCCCcEEEEEC-CCCCCCCC--CCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC
Confidence 99999999999999 77776655 489999999999999999999999999999999999999875
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-57 Score=472.57 Aligned_cols=378 Identities=18% Similarity=0.216 Sum_probs=303.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
++|+.++|+++++++||++|+.+. +.. +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE--cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|+++|++++|+++.++.+++.+++++++++++|+ +......+.... ..++ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 666544441221 1121 22
Q ss_pred eHHHHHHccc----CCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC--CCCcEEEEe
Q 010532 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (508)
Q Consensus 201 ~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 274 (508)
.++++..... ..........++++++|+|||||||.||||.++|+++.+.+..+...+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 2222222110 111112345678999999999999999999999999998887754433 55 788999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHH
Q 010532 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (508)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (508)
+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------- 267 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS--------------- 267 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC---------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc---------------
Confidence 99999999854 7778999999999876 999999999999999999999999998763210000
Q ss_pred hHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCC
Q 010532 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 432 (508)
....+++|.+++||+++++++.+.+++.+++.+++.||+||++ ++....
T Consensus 268 ----------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 268 ----------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ----------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ----------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 0011489999999999999999999999999999999999993 332222
Q ss_pred CcccCCcccccccCeeEEEeecCCC-cccCCCCCCCceEEEe-cCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 433 EMSMIGTVGPPVPNVDVCLESVPEM-EYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 433 ~~~~~~s~G~p~~~~~v~Iv~~~~~-~~~~~~~~~~Gel~v~-g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
....+++|.|+++++++|+| +++ ...+++.|+.|||+|+ |++++.||+|+|+.|.+.|.||||+|||+|+++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~ 390 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEEC
Confidence 12348899999999999999 555 2234455689999999 999999999999999999999999999999875
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-58 Score=473.11 Aligned_cols=391 Identities=16% Similarity=0.189 Sum_probs=304.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
+..||.++|+++++++||++|+++....++..+..+++||+||.++++++|+.|++.|+ +||+|+|+++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999871101233445789999999999999999999996 99999999999999999999
Q ss_pred HHHhhCCeeeeccC---CCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCC-CccEEEEeCCCChhhHHHHhhcCc
Q 010532 122 ACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 122 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
||+++|++++|+++ .++.+++..++++++++++|++......+......... ....++..+...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 78899999999999999999999988777665433211 111233222111
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCC------CcEE
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS------EDVY 271 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~------~~~~ 271 (508)
.. ...........++++++|+|||||||.||||+++|+++.+.+......+ .+.. ++++
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 10 0111223345778999999999999999999999999999888766544 4444 8999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHH
Q 010532 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (508)
Q Consensus 272 l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (508)
++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.|+++++| +.++|+++..++......
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~---------- 302 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD---------- 302 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----------
Confidence 99999999999875 6778999999999862 899999999999999 889999888876521100
Q ss_pred HHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC------CceEeccCc
Q 010532 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGL 419 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~ 419 (508)
+... ...+++||.+++||+++++++.+.+++.++ +.+++.||+
T Consensus 303 -----------------------~~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 303 -----------------------DDMA--------GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp -----------------------GGGT--------TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred -----------------------cccc--------ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 0001 111258999999999999999999999874 479999999
Q ss_pred ccCCcceeccCCCCc------------------------ccCCcccccccCeeEEEeecCC-CcccCCCCCCCceEEEec
Q 010532 420 TETCAGTFVSLPNEM------------------------SMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKG 474 (508)
Q Consensus 420 tE~~~~~~~~~~~~~------------------------~~~~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v~g 474 (508)
||++++++....... ...+++|+|++ ++++|+| ++ +.+++ .|+.|||+|+|
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~~--~g~~GEl~v~g 427 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIECP--DGTVGEIWVHG 427 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEECC--TTBCEEEEEES
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCCC--CCCEEEEEEeC
Confidence 999988776654321 22358999999 9999999 55 55554 45899999999
Q ss_pred CcccccccCChhhhhhhc------------ccCceecCcccccc
Q 010532 475 STVFSGYYKREDLTKEVM------------VDGWFHTGCPHLFL 506 (508)
Q Consensus 475 ~~v~~gY~~~~~~~~~~f------------~~gw~~TGD~g~~~ 506 (508)
|+++.||||+|+.|.++| .+|||+|||+|++.
T Consensus 428 ~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred CccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 999999999999999998 35699999999863
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-57 Score=473.61 Aligned_cols=393 Identities=16% Similarity=0.152 Sum_probs=323.3
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCch
Q 010532 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~ 114 (508)
..++++.++|++++++ +||++|+++. +.. +..+++||+||.++++++|+.|++. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999999 9999999876 422 2237899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010532 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 115 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGC-TTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcC-CceeEEEEecccCc--------
Confidence 999999999999999999999999999999999999999999998877665543322 55666666654211
Q ss_pred cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHH--HHhhhhhhhhhcccCCCCCcEEE
Q 010532 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
.....+++++..... ........++++++|+|||||||.||||.++|+ ++. ..... ...++.++|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~------~~~~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA------GWTGLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT------TTTSCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh------hhcCCCCCceEE
Confidence 013456666654322 122234568999999999999999999999999 544 33321 234678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (508)
+.+|++|.+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.+.+..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 9999999999875 777899999999985 39999999999999999999999999886410
Q ss_pred HHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceec
Q 010532 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 428 (508)
.. ....+++|.+++||+++++++.+.+++.+|+.+++.||+||++..++.
T Consensus 316 ----------------------~~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ----------------------LS--------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ----------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ----------------------cc--------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 00 001248999999999999999999999899999999999999877665
Q ss_pred cCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEe-----cCcccccccCChhhhhhhcccCceecCccc
Q 010532 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTGCPH 503 (508)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~-----g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g 503 (508)
.... ....+++|+|+++++++|+| ++++.++. |+.|||+|+ |++++.||||+|+.|.+.|.+|||+|||+|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~--G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGNVLPP--GTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCT--TCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCCCCCC--CCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4432 23458999999999999999 87776655 589999999 999999999999999999999999999999
Q ss_pred ccc
Q 010532 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
+++
T Consensus 442 ~~d 444 (570)
T 3c5e_A 442 IKD 444 (570)
T ss_dssp EEC
T ss_pred EEc
Confidence 875
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=478.32 Aligned_cols=373 Identities=17% Similarity=0.156 Sum_probs=305.9
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010532 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 38 ~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
.......++.++|+++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++
T Consensus 69 ~~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~ 139 (570)
T 4gr5_A 69 ERAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV 139 (570)
T ss_dssp -CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred ccCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 34456789999999999999999999864 2 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 118 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+++|||+++|++++|+++.++.+++.+++++++++++|++......+ .....++..+..
T Consensus 140 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~------------- 198 (570)
T 4gr5_A 140 VALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA------------- 198 (570)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC---------------
T ss_pred HHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc-------------
Confidence 99999999999999999999999999999999999999997643321 122222211110
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
.. ............++++++|+|||||||.||||+++|+++.+.+.. .....+.+++++++.+|+
T Consensus 199 --------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~------~~~~~~~~~d~~l~~~p~ 263 (570)
T 4gr5_A 199 --------AS-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG------QDYAGFGPDEVFLQCSPV 263 (570)
T ss_dssp --------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS------CCSSCCSTTCEEEECSCT
T ss_pred --------cc-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh------hhhcCCCCCCEEEEecCc
Confidence 00 001111223457899999999999999999999999999876654 222367889999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010532 278 AHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
+|..+...++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+....
T Consensus 264 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------------- 323 (570)
T 4gr5_A 264 SWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-------------------- 323 (570)
T ss_dssp TSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG--------------------
T ss_pred cHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh--------------------
Confidence 886666667788999999999863 899999999999999999999999998752111
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC
Q 010532 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
..+++|.+++||++++.++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 ----------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~ 375 (570)
T 4gr5_A 324 ----------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA 375 (570)
T ss_dssp ----------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG
T ss_pred ----------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc
Confidence 014799999999999999988888876 789999999999988766543322
Q ss_pred ---cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-cc--------CceecCc
Q 010532 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTGC 501 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~--------gw~~TGD 501 (508)
.....++|+|+++++++|+| +++++++. |+.|||+|+||+++.||||+|+.|.++| .+ |||+|||
T Consensus 376 ~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~--G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 376 GDLSGTALPIGVPLAGKRAYVLD-DDLKPAAN--GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccCCCccccceeeCCCEEEEEC-CCCCCCCC--CCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 22336799999999999999 88776655 5899999999999999999999999999 43 7999999
Q ss_pred ccccc
Q 010532 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|+++
T Consensus 453 lg~~d 457 (570)
T 4gr5_A 453 LARRR 457 (570)
T ss_dssp EEEEC
T ss_pred eEEEC
Confidence 99975
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=472.02 Aligned_cols=381 Identities=22% Similarity=0.300 Sum_probs=305.6
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhC
Q 010532 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 127 (508)
++|++.++++||++++... +..+ +++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999864 2211 579999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHH
Q 010532 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (508)
Q Consensus 128 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 207 (508)
++++|+++.++.+++.+++++++++++|++.+....+....... . ..++.++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999876543332221111 0 13333332211 01122111
Q ss_pred cccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-H
Q 010532 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (508)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~ 286 (508)
.. ..........++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122223345789999999999999999999999999999988865544 7889999999999999988765 6
Q ss_pred HHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCC
Q 010532 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (508)
Q Consensus 287 ~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (508)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+.+...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 677999999998876 9999999998 89999999999998865210
Q ss_pred CcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCccccccc
Q 010532 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (508)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~ 445 (508)
.... ..+++|.+++||+++++++.+.+++.+|+.+++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKE--------TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTT--------TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----cccc--------chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 0001 124899999999999999999999999999999999999987655333 23344589999999
Q ss_pred CeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 446 ~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
+++++|+|.++++.++ .|+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 328 ~~~~~i~d~~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~ 387 (503)
T 4fuq_A 328 GVSARVTDPETGKELP--RGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID 387 (503)
T ss_dssp TCEEEEECTTTCCBCC--TTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred CeEEEEEECCCCCCCc--CCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc
Confidence 9999999944555554 55899999999999999999999999999 69999999999984
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-57 Score=472.28 Aligned_cols=392 Identities=17% Similarity=0.215 Sum_probs=310.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
..++++.++|+++++ +||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 455679999999999 9999999853 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCc-cEEEEeCCCChhhHHHHhhcCcEE
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l-~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
|||+++|++++|+++.++.+++.+++++++++++|++.+....+....... ..+ ..++..+..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987765554432211 223 345444432110 0012
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHH-HHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
..++++..... .........++++++++|||||||.||||+++|+++ ....... ....++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~-----~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA-----KPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTC-----CCCCCCCTTCEEEESSCTT
T ss_pred cchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHh-----hhccCCCCCcEEEEeecHH
Confidence 24666665322 122233457899999999999999999999999999 5555442 2234678899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEec--CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 279 HIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~vv~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+....
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 294 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--------------------- 294 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC---------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc---------------------
Confidence 9999876 566799999999873 3999999999999999999999999887641000
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
+.. ...++|.+++||+++++++.+.+++.+|+.+++.||+||++++++...... .
T Consensus 295 -------------~~~-----------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 295 -------------PAR-----------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp -------------CCG-----------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred -------------ccc-----------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 000 002799999999999999999999999999999999999987766554443 3
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
..+++|+|+++++++|+| ++++.++. |+.|||+|+||+++.|||++++.|.+.|.+|||+|||+|+++
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVPD--GEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL 417 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCCT--TSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCCC--CCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC
Confidence 348999999999999999 88776654 589999999999999999999999999999999999999875
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-57 Score=481.07 Aligned_cols=405 Identities=14% Similarity=0.205 Sum_probs=323.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 367889999999999999999975 33333447899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCC-CCccEEEEeCCCChhhHHHH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~l~~vi~~~~~~~~~~~~~ 192 (508)
|+++|++++|+++.++.+++..++++++++++|+++... ..+.+...... ..++.+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 999999999999999999999999999999999987642 12222222111 24566777653221000
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhh-hhhhhhhcccCCCCCcEE
Q 010532 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 271 (508)
........|++++..... ........++++++|+|||||||.||||+++|++++..... +... +++.++|++
T Consensus 229 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~d~~ 301 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV-----FDYHPGDIY 301 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH-----TTCCTTCEE
T ss_pred -ccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHh-----cCCCCCCEE
Confidence 000124568887764321 12233456799999999999999999999999998876643 2222 367889999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHH
Q 010532 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (508)
Q Consensus 272 l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (508)
++.+|++|..++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 371 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------- 371 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc----------
Confidence 99999999999854 7788999999999863 7899999999999999999999999886521100
Q ss_pred HHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccC
Q 010532 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (508)
. .....++||.+++||+++++++.+++.+.+| +.+++.||+||+
T Consensus 372 -------------------------~--------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 372 -------------------------I--------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp -------------------------T--------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred -------------------------c--------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 0 0012258999999999999999999999888 899999999999
Q ss_pred CcceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---ccCc
Q 010532 423 CAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (508)
Q Consensus 423 ~~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~gw 496 (508)
++.++...+.. ....+++|+|++|++++|+| +++.+++. |+.|||+|+| |+++.||||+++.+.+.| .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCC--CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 98776654432 33458999999999999999 88776654 4899999999 799999999999988877 3899
Q ss_pred eecCcccccc
Q 010532 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|+++
T Consensus 496 y~TGDlg~~d 505 (652)
T 1pg4_A 496 YFSGDGARRD 505 (652)
T ss_dssp EEEEEEEEEC
T ss_pred EECCcEEEEc
Confidence 9999999975
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=479.68 Aligned_cols=406 Identities=17% Similarity=0.202 Sum_probs=324.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++||
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA 158 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 158 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 68899999999999999999976 333334478999999999999999999 99999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH---------HHhhcCCCCCCCccEEEEeCCCChhhHHHHh
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~ 193 (508)
|+++|++++|+++.++.+++..++++++|+++|+++.... .+.+..... +.++.+++++...... ..
T Consensus 159 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~---~~ 234 (663)
T 1ry2_A 159 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-PGVRHVLVYRKTNNPS---VA 234 (663)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-TTCCEEEEECSSCCSS---CC
T ss_pred HHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC-CCCceEEEEecCCCCc---cc
Confidence 9999999999999999999999999999999999876421 222333222 4567777765432100 00
Q ss_pred hcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEE
Q 010532 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 273 (508)
........|+++..... ...+.....++++++|+|||||||.||||+++|++++....... ....++.++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~----~~~~~~~~~d~~~~ 309 (663)
T 1ry2_A 235 FHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM----RYTFDTHQEDVFFT 309 (663)
T ss_dssp CCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHH----HHHSCCCSSCEEEE
T ss_pred cCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHH----HHhcCCCCCcEEEE
Confidence 00112456777765432 12233445789999999999999999999999999876654321 12236788999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010532 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 274 ~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
..|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------------ 377 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY------------ 377 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS------------
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc------------
Confidence 999999999854 7788999999999863 7899999999999999999999998875410000
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccCCc
Q 010532 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCA 424 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~ 424 (508)
.+ ...+++||.+++||+++++++.+++++.+| +++++.||+||+++
T Consensus 378 -----------------------~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~ 426 (663)
T 1ry2_A 378 -----------------------IE--------NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 426 (663)
T ss_dssp -----------------------SS--------SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCS
T ss_pred -----------------------cc--------cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccC
Confidence 00 011258999999999999999999999887 89999999999997
Q ss_pred ceeccCC-C-CcccCCcccccccCeeEEEeecC-CCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc-c--cCc
Q 010532 425 GTFVSLP-N-EMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM-V--DGW 496 (508)
Q Consensus 425 ~~~~~~~-~-~~~~~~s~G~p~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f-~--~gw 496 (508)
.++...+ . ....++++|+|++|++++|+| + ++.+++. .|+.|||+|+| |+++.||||+++.+.+.| . +||
T Consensus 427 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~ 504 (663)
T 1ry2_A 427 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY 504 (663)
T ss_dssp CSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred eeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCE
Confidence 7666544 2 233458999999999999999 6 7766654 25899999999 589999999999998887 3 899
Q ss_pred eecCcccccc
Q 010532 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|+++
T Consensus 505 y~TGDlg~~d 514 (663)
T 1ry2_A 505 YFTGDGAAKD 514 (663)
T ss_dssp EEEEEEEEEC
T ss_pred EEcCCEEEEc
Confidence 9999999985
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=500.59 Aligned_cols=423 Identities=23% Similarity=0.284 Sum_probs=332.0
Q ss_pred cCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHH
Q 010532 16 ASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAI 95 (508)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L 95 (508)
..++.+..+.+|++..+.... +...|+.++|+++++++||++|+++. +.. +++||+||.++++++|+.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L 105 (979)
T 3tsy_A 37 KQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANF 105 (979)
T ss_dssp --------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHH
Confidence 334455667778777654333 34589999999999999999999865 322 6799999999999999999
Q ss_pred HHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCc
Q 010532 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175 (508)
Q Consensus 96 ~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l 175 (508)
+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+....... .+
T Consensus 106 ~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~ 183 (979)
T 3tsy_A 106 HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--GV 183 (979)
T ss_dssp HHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--CC
T ss_pred HHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--Cc
Confidence 9999999999999999999999999999999999999999999999999999999999999987665544332111 12
Q ss_pred cEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhh
Q 010532 176 KTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253 (508)
Q Consensus 176 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~ 253 (508)
.++.++..... ........++++...... ...+.....++++++|+|||||||.||||+++|+++.+.+..
T Consensus 184 -~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 256 (979)
T 3tsy_A 184 -VIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256 (979)
T ss_dssp -EEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHH
T ss_pred -eEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHH
Confidence 34444432110 011234556665543322 122233457899999999999999999999999999988766
Q ss_pred hhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHH
Q 010532 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331 (508)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 331 (508)
..... .....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+.
T Consensus 257 ~~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 335 (979)
T 3tsy_A 257 QVDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335 (979)
T ss_dssp HHCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred HHHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence 43211 11235778999999999999999966 6777999999999876 999999999999999999999999988652
Q ss_pred HHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-C
Q 010532 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-C 410 (508)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~ 410 (508)
... ... ..+++|.+++||+++++++.+++++.+ +
T Consensus 336 ~~~-------------------------------------~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 370 (979)
T 3tsy_A 336 SET-------------------------------------EKY--------DLSSIRVVKSGAAPLGKELEDAVNAKFPN 370 (979)
T ss_dssp GGG-------------------------------------GTS--------CCTTCCEEEESSCCCCSSHHHHHHHHCTT
T ss_pred ccc-------------------------------------cCC--------CccceEEEEEcCCCCCHHHHHHHHHHCCC
Confidence 111 111 124899999999999999999999988 8
Q ss_pred CceEeccCcccCCcceeccCC----CCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChh
Q 010532 411 AHVLQGYGLTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486 (508)
Q Consensus 411 ~~v~~~yG~tE~~~~~~~~~~----~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~ 486 (508)
+.+++.||+||++++++.+.. ......+++|+|+++++++|+|.+++..++ .|+.|||+|+||+++.||||+|+
T Consensus 371 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~--~g~~GEl~i~g~~v~~GY~~~p~ 448 (979)
T 3tsy_A 371 AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS--RNQPGEICIRGHQIMKGYLNNPA 448 (979)
T ss_dssp CEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC--TTCCEEEEEESTTSCSEETTCHH
T ss_pred CeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC--CCCccEEEEECCCccccccCChh
Confidence 999999999999987665421 112345889999999999999944455544 45899999999999999999999
Q ss_pred hhhhhc-ccCceecCcccccc
Q 010532 487 LTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 487 ~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.|.+.| .+|||+|||+|++.
T Consensus 449 ~t~~~f~~~g~~~TGDl~~~~ 469 (979)
T 3tsy_A 449 ATAETIDKDGWLHTGDIGLID 469 (979)
T ss_dssp HHHHHBCTTSCEEEEEEEEEC
T ss_pred hhhhhccCCCcEEcCCEEEEc
Confidence 999999 79999999999975
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-56 Score=465.19 Aligned_cols=372 Identities=18% Similarity=0.242 Sum_probs=310.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+||.++|+++++++||++|+++. + +++||+||.++++++|+.|++. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999864 2 6899999999999999999874 888999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++.++++.++++++|++....... .. .. .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---QQ----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---CS----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---cc----------------------cceecH
Confidence 999999999999999999999999999999999976532111 00 00 124456
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++...............++++++|+|||||||.||||+++|+++.+.+..+...+ .+..++++++.+|++|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 66665443322233345778999999999999999999999999999988855544 7888999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------- 252 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------- 252 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------
Confidence 8778888999999999864 8999999999999999999999998876411
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC----
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (508)
.... ...+++|.+++||+++++++.+.+++.+ ++.+++.||+||+++.++......
T Consensus 253 -----------~~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 253 -----------GFSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp -----------TCST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred -----------cccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 0000 0124799999999999999999999988 899999999999988766543322
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc--ccC--ceecCccccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGCPHLF 505 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f--~~g--w~~TGD~g~~ 505 (508)
.....++|+|+++++++|+| +++..++. |+.|||+|+||+++.||||+|+.|.+.| .+| ||+|||+|++
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPE--GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCCCCC--CCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 12236799999999999999 88776654 5899999999999999999999999999 345 8999999976
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=465.61 Aligned_cols=373 Identities=19% Similarity=0.200 Sum_probs=303.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
+||.+.|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999864 2 57999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHH
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 203 (508)
+++|++++|+++.++.+++.++++.++++++|++....... ... .++... .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999985432100 001 111100 112
Q ss_pred HHHHcc-cCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 204 EFLQLG-ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 204 ~l~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
++.... ...........++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 1112223345789999999999999999999999999999988855544 7889999999999999998
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8778888999999999874 89999999999999999999999988753110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCc---
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM--- 434 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~--- 434 (508)
... ...+++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++.......
T Consensus 255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 000 1124899999999999999999999988 7899999999999987765443221
Q ss_pred -ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc----cCceecCccccc
Q 010532 435 -SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGCPHLF 505 (508)
Q Consensus 435 -~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~----~gw~~TGD~g~~ 505 (508)
....++|+|+++++++|+| +++..++. |+.|||+|+||+++.|||++|+.|.+.|. +|||+|||+|++
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBCCT--TSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCCCC--CCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 2347899999999999999 88776655 48999999999999999999999999982 569999999975
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-56 Score=466.55 Aligned_cols=371 Identities=18% Similarity=0.251 Sum_probs=301.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010532 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.+...++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|+++++++
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 105 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 105 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 344579999999999999999999863 2 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|+++.++.+++.+++++++++++|++......+..... ...+..+....
T Consensus 106 ~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~-------------- 166 (563)
T 1amu_A 106 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT-------------- 166 (563)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST--------------
T ss_pred HHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh--------------
Confidence 99999999999999999999999999999999999998876544433211 11233222110
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
+ ... ..........++++++|+|||||||.||||+++|+++.+.+..+... .++.++|++++.+|++|
T Consensus 167 -----~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -----I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENS-----LNVTEKDRIGQFASISF 234 (563)
T ss_dssp -----T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHT-----SCCCTTCEEEECSCTTS
T ss_pred -----h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHh-----cCCCCCCEEEEeCCccH
Confidence 0 000 01111223467899999999999999999999999999888775443 37789999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
..++..++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+...
T Consensus 235 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------ 290 (563)
T 1amu_A 235 DASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------ 290 (563)
T ss_dssp THHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------------------------
T ss_pred HHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------------------------
Confidence 8888777888999999999863 889999999999999999999998765320
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC--
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-- 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (508)
..+++|.+++||+++++++.+.+++ .+.+++.||+||++++++......
T Consensus 291 ---------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~ 341 (563)
T 1amu_A 291 ---------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKET 341 (563)
T ss_dssp ---------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSC
T ss_pred ---------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeeccccc
Confidence 0147999999999999999999887 478999999999987766543322
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc-------cCceecCcccccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~-------~gw~~TGD~g~~~ 506 (508)
.....++|+|+++++++|+| +++..++. |+.|||+|+||+++.||||+|+.|.+.|. +|||+|||+|+++
T Consensus 342 ~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d 418 (563)
T 1amu_A 342 IGHSVPIGAPIQNTQIYIVD-ENLQLKSV--GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL 418 (563)
T ss_dssp CCSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEEC
T ss_pred CCCCCcccceeCCCEEEEEC-CCcCCCCC--CCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEc
Confidence 22347899999999999999 87776655 58999999999999999999999999993 2599999999975
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=469.41 Aligned_cols=388 Identities=14% Similarity=0.165 Sum_probs=318.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.++|+++++ ||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 34789999999987 999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
||+++|++++|+++..+.+++..+++.+++++++++.... ........ ....++.+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVT-EHSSIRVVQLLNDSGE---------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHH-HSTTCCEEEEETCCST----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhh-cCCccceeeecccccc----------
Confidence 9999999999999999999999999999999999998754 11111111 1144455555444321
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecC
Q 010532 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 276 (508)
..+.+...... .........+++++||+|||||||.||||+++|+++.+.+......+ ++.+++++++.+|
T Consensus 163 ---~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p 233 (617)
T 3rg2_A 163 ---HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIP 233 (617)
T ss_dssp ---TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSC
T ss_pred ---cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEecc
Confidence 12334333322 12223445679999999999999999999999999999998866555 7889999999999
Q ss_pred hHHHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010532 277 LAHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 277 ~~~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
++|.+++.. .+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+........
T Consensus 234 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------- 298 (617)
T 3rg2_A 234 AAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------------- 298 (617)
T ss_dssp TTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT---------------
T ss_pred chhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc---------------
Confidence 999999875 7778999999999876 8999999999999999999999999987643321110
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010532 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
...+++|.+++||+++++++.+.+.+.+++.+++.||+||++..++......
T Consensus 299 ----------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~ 350 (617)
T 3rg2_A 299 ----------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350 (617)
T ss_dssp ----------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCH
T ss_pred ----------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcc
Confidence 0114899999999999999999999999999999999999986555443332
Q ss_pred cccCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 434 MSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.....++|+|+ ++++++|+| ++++.+|.| +.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 351 ~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~ 422 (617)
T 3rg2_A 351 EKIIHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID 422 (617)
T ss_dssp HHHHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cccccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc
Confidence 22336789997 788999999 887766554 899999999999999999999999999 89999999999985
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-56 Score=469.35 Aligned_cols=369 Identities=16% Similarity=0.132 Sum_probs=302.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999864 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|||+++|++++|+++.++.+++..+++++++++++++....... ..+..+
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~---------------------- 144 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV---------------------- 144 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------
Confidence 99999999999999999999999999999999999765432211 111111
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
.+.... ........+...+++++||+|||||||.||||+++|+++.+.+.. .. ...+.++++++..+|++|.
T Consensus 145 ~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~-----~~~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 145 PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS-----FLAFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG-----GGTTCTTCEEEECSCTTST
T ss_pred eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH-----hhCCCCCCEEEEECccCHH
Confidence 011000 001112223446899999999999999999999999999887654 22 2367889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 281 FDRAIEEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
.++...+.+++.|+++++.+ .++..+++.|+++++|+++++|+++..+.+...
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------ 272 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------ 272 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------
Confidence 99888888999999999975 289999999999999999999999998764200
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC---
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE--- 433 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~--- 433 (508)
...+++|.+++||+++++++.+.+.+.+ ++.++|.||+||++++++......
T Consensus 273 ------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 273 ------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp ------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred ------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 0114799999999999988877776655 789999999999998765443222
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhccc--------CceecCccccc
Q 010532 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTGCPHLF 505 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~--------gw~~TGD~g~~ 505 (508)
.....++|+|+++++++|+| +++... ++.|+.|||+|+|++++.||||+|+.|.+.|.+ +||+|||+|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~~~-~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQEI-AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSCBC-CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCCCC-CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 22347899999999999999 777652 235689999999999999999999999999932 79999999997
Q ss_pred c
Q 010532 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
.
T Consensus 407 ~ 407 (620)
T 4dg8_A 407 D 407 (620)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-56 Score=462.74 Aligned_cols=375 Identities=18% Similarity=0.163 Sum_probs=306.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010532 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
.++|+.+.|+++++++||++|+.+. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 72 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999764 2 579999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010532 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++.++++.++++++|++.+....+ ... ....
T Consensus 73 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~----------------------~~~~ 122 (521)
T 3l8c_A 73 ALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI----------------------SLVS 122 (521)
T ss_dssp HHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS----------------------EEEE
T ss_pred HHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC----------------------cccc
Confidence 9999999999999999999999999999999999987643211 111 1233
Q ss_pred HHHHHHcc--cCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 202 WDEFLQLG--ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 202 ~~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
++++.... ...........++++++|+|||||||.||||+++|+++.+.+..+... ........++++...|++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 199 (521)
T 3l8c_A 123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED---AAFDVPKQPQMLAQPPYSF 199 (521)
T ss_dssp HHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC---TTTCCCSSCEEECCSCTTS
T ss_pred hhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc---cccCCCCCCeEEecCCccH
Confidence 33333211 111222334578999999999999999999999999999877764332 1236778899999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
..++..++.++..|+++++.+. ++..+++.+.+++++++.++|+++..+.....
T Consensus 200 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 257 (521)
T 3l8c_A 200 DLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD---------------------- 257 (521)
T ss_dssp GGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc----------------------
Confidence 8887778888999999999864 88999999999999999999999987654110
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC-
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE- 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~- 433 (508)
... ...+++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 258 ---------------~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~ 314 (521)
T 3l8c_A 258 ---------------FCQ--------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE 314 (521)
T ss_dssp ---------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH
T ss_pred ---------------ccc--------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc
Confidence 000 0114799999999999999999999888 899999999999988766543322
Q ss_pred ---cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc----ccCceecCcccccc
Q 010532 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f----~~gw~~TGD~g~~~ 506 (508)
....+++|+|+++++++|+| +++.+++. |+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|+++
T Consensus 315 ~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d 391 (521)
T 3l8c_A 315 MVDNYTRLPIGYPKPDSPTYIID-EDGKELSS--GEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391 (521)
T ss_dssp HHHHCSSCEEEEECTTSCEEEEC-TTSCBCCT--TCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred cccCCCccccccccCCCEEEEEC-CCcCCCCC--CCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence 12346899999999999999 88776655 4899999999999999999999999998 35799999999975
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=466.32 Aligned_cols=389 Identities=19% Similarity=0.202 Sum_probs=309.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....|+.++|+++++++||++|+++. +. +..+++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999886 42 22378999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCC---ChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 121 EACNALGLHCVPLYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
|||+++|++++|+++.. +.+++..+++.+++++++++.+....+........+....+.
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~------------------ 144 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP------------------ 144 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE------------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc------------------
Confidence 99999999999999988 457899999999999999987765554332211111111111
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
....+++.... ..........++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|+
T Consensus 145 -~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 145 -AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp -EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11222211111 112233455789999999999999999999999999999998865544 78899999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHH
Q 010532 278 AHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (508)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (508)
+|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------- 282 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------- 282 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------
Confidence 99999987 7788999999999864 78999999999999999999999998776321110
Q ss_pred HhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC------CceEeccCcccCCcc
Q 010532 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCAG 425 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~~ 425 (508)
... ...+++|.+++||+++++++.+.+++.++ ..+++.||+||++++
T Consensus 283 -------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 283 -------------------KEG--------LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp -------------------GTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred -------------------ccC--------CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 000 11248999999999999999999998873 479999999999988
Q ss_pred eeccCCC--------------------------CcccCCcccccccCeeEEEeecCC-CcccCCCCCCCceEEEecCccc
Q 010532 426 TFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVF 478 (508)
Q Consensus 426 ~~~~~~~--------------------------~~~~~~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v~g~~v~ 478 (508)
++...+. .....+++|+|+++ ++|+| ++ +.+ ++.|+.|||+|+||+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~--~~~g~~GEl~v~g~~v~ 410 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIP--CDFDQVGEIWVQSNSVA 410 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCB--CCTTBCEEEEEESTTSC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcC--CCCCCEEEEEEeCCccc
Confidence 7754321 11223688999998 88888 55 444 44568999999999999
Q ss_pred ccccCChhhhhhhccc-------C--ceecCcccccc
Q 010532 479 SGYYKREDLTKEVMVD-------G--WFHTGCPHLFL 506 (508)
Q Consensus 479 ~gY~~~~~~~~~~f~~-------g--w~~TGD~g~~~ 506 (508)
.||||+|+.|.++|.+ | ||+|||+|++.
T Consensus 411 ~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d 447 (590)
T 3kxw_A 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH 447 (590)
T ss_dssp CCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE
T ss_pred ccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE
Confidence 9999999999999942 5 99999999874
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=454.98 Aligned_cols=372 Identities=24% Similarity=0.313 Sum_probs=295.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCC-CCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010532 39 PIPGMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
...++.|+.+.|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .||+|+++++|+++++
T Consensus 17 ~~~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~ 82 (505)
T 3nyq_A 17 RGSHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETG 82 (505)
T ss_dssp -------CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHH
T ss_pred CCcccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHH
Confidence 345578899999999999887 9999864 2 68999999999999998774 4899999999999999
Q ss_pred HHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010532 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 118 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+++|||+++|++++|+++.++.+++.+++++++++++|++.+... ......+..+ .....
T Consensus 83 ~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~------------- 142 (505)
T 3nyq_A 83 VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR------------- 142 (505)
T ss_dssp HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT-------------
T ss_pred HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc-------------
Confidence 999999999999999999999999999999999999999865210 0000122221 11110
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010532 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
...........++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|+
T Consensus 143 ------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 205 (505)
T 3nyq_A 143 ------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPL 205 (505)
T ss_dssp ------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCT
T ss_pred ------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccH
Confidence 0011122345778999999999999999999999999999998866555 78899999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010532 278 AHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
+|..++.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+...
T Consensus 206 ~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 264 (505)
T 3nyq_A 206 FHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD-------------------- 264 (505)
T ss_dssp TSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC--------------------
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC--------------------
Confidence 99999875 7788999999999876 899999999 889999999999999987632111
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010532 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
+. ....+ +++|.+++||+++++++.+.+++.+++++++.||+||+++.++...... .
T Consensus 265 -------------~~-~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~ 321 (505)
T 3nyq_A 265 -------------PE-LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-P 321 (505)
T ss_dssp -------------HH-HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-C
T ss_pred -------------ch-hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-C
Confidence 00 01112 2789999999999999999999999999999999999987766554443 3
Q ss_pred cCCcccccccCeeEEEeecCCCcccCC-CCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~-~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+++++++|+| +++.+++. +.|+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 448999999999999999 88877665 346899999999999999999999999999 79999999999975
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-55 Score=455.62 Aligned_cols=383 Identities=21% Similarity=0.236 Sum_probs=297.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
+||.++|+++++++||++|+++. + +++||+||.++++++|+.|++. +||+|+|+++|++++++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999864 2 4799999999999999999987 8999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE-eeH
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV-YSW 202 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~-~~~ 202 (508)
+++|++++|+++.++.+++.++++.++++++|++............ ...+..+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999999875443321110 01111111100000000 00000000 001
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+.................++++++|+|||||||.||||.++|+++.+.+......+ ++.+++++++.+|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111122345789999999999999999999999999999888855544 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcC
Q 010532 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (508)
+...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888888999999999876 999999999999999999999999988652100
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-cccCCcc
Q 010532 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTV 440 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~s~ 440 (508)
...++|.+++||+++++++.+.+++ +++++++.||+||+++.+....+.. ....+++
T Consensus 272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0026899999999999999999987 5999999999999987665544332 2345789
Q ss_pred cccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+|+++++++|+| ++ .++.|||+|+|++++.|||++++.+.. |.+|||+|||+|++.
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~ 386 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEID 386 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEEC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEc
Confidence 9999999999999 44 336799999999999999999999987 889999999999975
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=457.44 Aligned_cols=392 Identities=19% Similarity=0.154 Sum_probs=305.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccC----CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCC
Q 010532 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDG----KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (508)
Q Consensus 37 ~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n 112 (508)
.....+..|+.++|+++++++||++|+++. ++ .....+++||+||.++++++|+.|++.|+ +||+|+++++|
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n 88 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDR 88 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCS
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCC
Confidence 334456688999999999999999999876 32 12234789999999999999999999999 79999999999
Q ss_pred chhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHH
Q 010532 113 CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 113 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~ 192 (508)
++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... . .....++.....
T Consensus 89 ~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~-~~~~~~~~~~~~-------- 154 (562)
T 3ite_A 89 SLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----L-PPETKVLDTKNQ-------- 154 (562)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----C-CTTCEEEETTCH--------
T ss_pred CHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----c-Cccceeecccch--------
Confidence 99999999999999999999999999999999999999999999876543221 0 111222221110
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhh---hcccCCCCCc
Q 010532 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSED 269 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~---~~~~~~~~~~ 269 (508)
.+.+....... ........++++++|+|||||||.||||+++|+++.+.+..+...+. .....+...+
T Consensus 155 --------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 155 --------SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp --------HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred --------hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 12222222211 11223446788999999999999999999999999988776544321 1223567889
Q ss_pred EEEEecChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010532 270 VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 270 ~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
++++..|+.|..++...+.++..|+++++.+. .+..+.+.++++++|+++++|++++.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~---------------- 289 (562)
T 3ite_A 226 KFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV---------------- 289 (562)
T ss_dssp EEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------
T ss_pred eEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------
Confidence 99999999988887778888999999998765 467888999999999999999987764210
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCccee
Q 010532 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 427 (508)
+ ...+++|.+++||+++++++.+.+++.+++.+++.||+||+++.++
T Consensus 290 ---------------------~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 336 (562)
T 3ite_A 290 ---------------------P------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCS 336 (562)
T ss_dssp ---------------------G------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSE
T ss_pred ---------------------c------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeee
Confidence 0 0114899999999999999999999988999999999999988777
Q ss_pred ccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccC--ceecCccccc
Q 010532 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGCPHLF 505 (508)
Q Consensus 428 ~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~g--w~~TGD~g~~ 505 (508)
..........+++|+|+++++++|+| +++. .+++.|+.|||+|+||+++.||||+|+.+...+.+| ||+|||+|++
T Consensus 337 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~ 414 (562)
T 3ite_A 337 AGRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRM 414 (562)
T ss_dssp EEECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEE
T ss_pred eeeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEE
Confidence 66554444458899999999999999 4433 234456899999999999999999999988777666 9999999998
Q ss_pred c
Q 010532 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
+
T Consensus 415 d 415 (562)
T 3ite_A 415 D 415 (562)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=474.69 Aligned_cols=372 Identities=19% Similarity=0.237 Sum_probs=305.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 2 4799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|++|.++.+++..++++++++++|++.+....+... +.....+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEeccccc----------------
Confidence 999999999999999999999999999999999987654332211 12223333332100
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010532 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
.............+++++||+|||||||.||||+++|+++.+.. . ......+.++++++...|++|..+
T Consensus 593 -----~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~-----~~~~~~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 593 -----FEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-K-----HVDYMAFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -----GGSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-S-----SCCSSCCCTTCEEEECSCTTSTHH
T ss_pred -----cccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-H-----HHHhcCCCCCCEEEEECCccHHHH
Confidence 00011112234578999999999999999999999999998763 3 223346788999999999998777
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
...++.+++.|+++++.+. ++..+.+.|+++++|+++++|++++.+.+...
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~------------------------- 716 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE------------------------- 716 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-------------------------
Confidence 7778889999999999874 89999999999999999999999998764200
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCCCC---c
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNE---M 434 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~---~ 434 (508)
..+ +++|.+++|||++++++.+.+.+.++ +.++|.||+||+++.++...... .
T Consensus 717 ---------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 717 ---------------DWM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ---------------HHH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ---------------hcC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 001 27999999999999999998888774 78999999999998776544322 2
Q ss_pred ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c------cCceecCcccccc
Q 010532 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTGCPHLFL 506 (508)
Q Consensus 435 ~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~------~gw~~TGD~g~~~ 506 (508)
....++|+|+++++++|+| ++++.+|.| +.|||+|+|++++.||+|+|+.|.++| . ++||+|||+|++.
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~ 849 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL 849 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEEC
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEc
Confidence 2336899999999999999 877766654 899999999999999999999999999 3 3499999999975
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-32 Score=268.66 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=169.6
Q ss_pred CCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEec
Q 010532 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (508)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~ 300 (508)
.++++||+|||||||.||||++||+++.+.+..+...+ ++.++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 37899999999999999999999999999988865554 7889999999999999999988888899999998886
Q ss_pred CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHH
Q 010532 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (508)
Q Consensus 301 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
.. ...++.|+++++|++.++|+++..+++.... ..++
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 42 2346779999999999999999988652110 0011
Q ss_pred HHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCccc
Q 010532 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (508)
Q Consensus 381 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~ 460 (508)
+++|.+++||+++++++.+++++ +++++++.||+||+++.+.....+... .+++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~-~g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPE-ASELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTT-CCSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccc-cceeeccCCCeEEEecC-------
Confidence 37999999999999999999987 589999999999999877766554433 38899999999988644
Q ss_pred CCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 461 ~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.|||+++|+.+ .+|||+|||+|++.
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d 239 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIH 239 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEEC
T ss_pred ------cCceEEecccc---------------cCcceecCCccccc
Confidence 59999998642 37999999999875
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=269.58 Aligned_cols=227 Identities=16% Similarity=0.085 Sum_probs=178.1
Q ss_pred CCCC-CCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHH-HHHHHHHcCCE
Q 010532 218 VKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAA 295 (508)
Q Consensus 218 ~~~~-~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~ 295 (508)
...+ +++++++|||||||.||+|.++|+++.+....+...+ ...++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL--YMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHH--HHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHH--HHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 8899999999999999999999999988776654322 223678899999999986555544 46777999999
Q ss_pred EEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHH
Q 010532 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (508)
Q Consensus 296 vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (508)
+++.+. ++..+++.|+++++|+++++|+++..|++..........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~---------------------------------- 204 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR---------------------------------- 204 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence 998865 999999999999999999999999999875443321100
Q ss_pred hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeec
Q 010532 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESV 454 (508)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~ 454 (508)
.+++|.+++||+++++++.+.+++.||+.+++.||+||+++.++...... . ...|.|.++++++|+|.
T Consensus 205 ---------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 205 ---------ETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp ---------SSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred ---------cCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence 14799999999999999999999999999999999999965533222211 1 33677888999999994
Q ss_pred CCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 455 ~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++.
T Consensus 273 ~~g~~~~--~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~ 310 (436)
T 3qov_A 273 ETGEPVP--EGEIGELVLTTL------------DREMMPLIRYRTRDLTRIL 310 (436)
T ss_dssp TTCSBCS--TTCCEEEEEEES------------SCCSSCCCSEEEEEEECEE
T ss_pred CCCCCCC--CCCceEEEEecc------------CcCCceEEEEEcCCEEEEc
Confidence 4555554 558999999984 2344578999999999874
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=265.02 Aligned_cols=242 Identities=16% Similarity=0.083 Sum_probs=183.6
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh-H
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-A 278 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~ 278 (508)
.+.+++.... +.......++++++++|||||||.||+|.++|+++......+...+ ...++.++|++++.+|+ +
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSI--RAAGARRGDKVHVSYGYGL 145 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCSS
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEcccccc
Confidence 3455555433 1123344678999999999999999999999999987765543321 12367889999999998 6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010532 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 279 ~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------ 207 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------ 207 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------
Confidence 77777777788999999998765 99999999999999999999999999887543321100
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcc-eeccCCCCccc
Q 010532 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSM 436 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~ 436 (508)
..+++|.+++||+++++++.+.+++.+|+.+++.||+||+++. +....+...
T Consensus 208 -------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~-- 260 (437)
T 2y27_A 208 -------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK-- 260 (437)
T ss_dssp -------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC--
T ss_pred -------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC--
Confidence 0137999999999999999999999899999999999998543 332222111
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
..++.|.+++.++|+|.+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++.
T Consensus 261 -~g~~~~~~~~~~~i~d~~~g~~~~--~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~ 315 (437)
T 2y27_A 261 -DGPTIWEDHFYPEIIDPETGEVLP--DGELGELVFTSL------------TKEALPIIRYRTRDLTRLL 315 (437)
T ss_dssp -SSCEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCCSEEEEEEECEE
T ss_pred -CceeEccCceEEEEEcCCCCCCCC--CCCccEEEEecC------------CcCCchhheeecCCEEEEe
Confidence 125667789999999933355544 568999999983 3345678999999999875
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=263.49 Aligned_cols=243 Identities=15% Similarity=0.087 Sum_probs=183.1
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh-
Q 010532 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~- 277 (508)
..+.+++.... +.......++++++++|||||||.||+|.++|+++......+...+ ...++.++|+++..+|+
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSI--RAAGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEeccCc
Confidence 34455555433 1223344678999999999999999999999999987765544321 12367889999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 209 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------- 209 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 566777677788999999988875 99999999999999999999999999887543321100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcc-eeccCCCCcc
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~ 435 (508)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +.......
T Consensus 210 --------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-- 261 (443)
T 2y4o_A 210 --------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-- 261 (443)
T ss_dssp --------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT--
T ss_pred --------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC--
Confidence 0137999999999999999999999999999999999998543 33222211
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010532 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
. ...+.|.+++.++|+|.+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++.
T Consensus 262 ~-~g~~~~~~~~~~~i~d~~~g~~~~--~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~ 317 (443)
T 2y4o_A 262 K-DGPVIWEDHFYPEIIDPVTGEVLP--DGSQGELVFTSL------------TKEAMPVIRYRTRDLTALL 317 (443)
T ss_dssp C-CSEEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCSSEEEEEEECEE
T ss_pred C-CceEEccCCeEEEEEcCCCCCCCC--CCCceEEEEeCC------------CcccChhheeecCCEEEEc
Confidence 1 125567789999999933455554 568999999983 2344568999999999875
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=247.71 Aligned_cols=228 Identities=15% Similarity=0.102 Sum_probs=175.9
Q ss_pred CCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCCEEE
Q 010532 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAIG 297 (508)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~vv 297 (508)
..++++++|+|||||||.||+|.++|+++......+... ....++.++|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG--YQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTT--TTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhh--HHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999888754332 233467889999999999 99999988777789999444
Q ss_pred EecCCHH-----------------------HHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010532 298 FWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 298 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
..++++. .+++.|+++++|++.++|+++..|++...
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--------------------- 224 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--------------------- 224 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH---------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh---------------------
Confidence 4444776 88889999999999999999999875211
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHH-HHh-CCceEeccCcccCCcceeccCCC
Q 010532 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLPN 432 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~~ 432 (508)
....++ +++|.+++||+++++++.+.++ +.| ++.+++.||+||+++++..+..
T Consensus 225 ----------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 225 ----------------VVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ----------------HHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ----------------hhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 111112 2799999999999999999999 888 8999999999999876643321
Q ss_pred CcccCCccccc------ccCeeEEEeecC-CCcccCCCCCCCceEEEecC---cccccccCChhhhhhhcccCceecCcc
Q 010532 433 EMSMIGTVGPP------VPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDGWFHTGCP 502 (508)
Q Consensus 433 ~~~~~~s~G~p------~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~~~~~f~~gw~~TGD~ 502 (508)
.++|+| +++++++|+| + +++.++ .|+.|||+|++. .++.+|...+..+.....+||+.+|+-
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~~vp--~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~ 351 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITAQTVE--YGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLA 351 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTCSBCC--TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCCcCCC--CCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcccc
Confidence 147888 9999999999 5 666554 559999999983 346677766655555556788877753
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0037 Score=64.28 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=34.9
Q ss_pred EEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCC-CCcceEEeehHHHHHH
Q 010532 198 AVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVTF 250 (508)
Q Consensus 198 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~~~ 250 (508)
.+.+++++....+. ......-..++.+.++..||||| |++|.+.+|...+-..
T Consensus 73 Pv~~Yedl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 73 PVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp CCBCHHHHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 35566665443211 01111233667788999999999 7899999999987653
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.017 Score=59.22 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=34.6
Q ss_pred EEeeHHHHHHcccCCCC-CC-CCCCCCCeEEEEeccCCC-CCcceEEeehHHHHHH
Q 010532 198 AVYSWDEFLQLGENKQF-DL-PVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVTF 250 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~-~~-~~~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~~~ 250 (508)
.+.+++++....+.... +. .-..++.+.+...||||| |.+|-+.+|...+-..
T Consensus 67 Pi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 67 PIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp CCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 35567665443321111 11 223567778999999999 6799999999987553
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0068 Score=62.01 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=34.9
Q ss_pred EEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCC-CCcceEEeehHHHHH
Q 010532 198 AVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVT 249 (508)
Q Consensus 198 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~~ 249 (508)
.+.+++++....+. ......-..++.+.++..||||| |.+|-+..|...+-.
T Consensus 72 Pi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 72 PLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp CCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 35667765543321 11112334667778999999999 779999999987755
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.7 Score=45.87 Aligned_cols=125 Identities=14% Similarity=0.030 Sum_probs=90.4
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc--hhHHHHHHHHHhhCCeeee
Q 010532 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vp 132 (508)
.++.++.+... .+.++. ...+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34666655441 333343 35789999998888888878788999999999888863 3445567888899999888
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CC--CCCCccEEEEeCCC
Q 010532 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PK--TTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~--~~~~l~~vi~~~~~ 184 (508)
++.. ..+.+...+++.++.+++.....+..+.+.. .. ....++.+++.+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7664 7888999999999999998887766554431 11 12578888776654
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.89 Score=45.02 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc--hhHHHHHHHHHhhCCeeee
Q 010532 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vp 132 (508)
.++.++.+... .+.++. ...+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666655541 232332 35789999998888888878788999999999888863 3445567888999999887
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC---C--CCCCccEEEEeCCC
Q 010532 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---K--TTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~--~~~~l~~vi~~~~~ 184 (508)
++.. ..+.+...+++.++.+++.....+..+.+... . ....++.+++.+..
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 7664 78889999999999999998877666544321 1 12577777776554
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=1.1 Score=44.18 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=90.1
Q ss_pred CCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc--hhHHHHHHHHHhhCCeeeecc
Q 010532 59 NNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (508)
Q Consensus 59 d~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vpl~ 134 (508)
+.++.+... -+.++ ....+|.+.+...+..++..+...|+.++|++....+.+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655441 22233 236789999999888888888888999999999888753 344556788899999988776
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CC--CCCCccEEEEeCCC
Q 010532 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PK--TTEHLKTIVSFSKV 184 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~--~~~~l~~vi~~~~~ 184 (508)
.. .++.+...+++.++.+++.....+..+.+.. .. ....++.+++.+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 6788999999999999999887766654431 11 13678888886654
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=90.01 E-value=4.3 Score=40.80 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=87.8
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeeeec
Q 010532 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 133 (508)
.++.+|++... .+.++ .-..+|.+.+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777777661 22223 2367899988877666544 4588999999888876533 234467788899988876
Q ss_pred cCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCC
Q 010532 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (508)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~ 184 (508)
+ ...++.+...+++.++.+++.....+..+.+........++.++..+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4788999999999999999999888777766554443478887776554
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=84.73 E-value=3.7 Score=39.36 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch--hHHHHHHHHHhhCCeeee
Q 010532 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vp 132 (508)
.++.++.+... -+.++. ...+|.+.+...+..++..+...|+.++|++...++.+. -.+...+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 45666766552 233333 256789999888887777777789999999999888632 234445556888996555
Q ss_pred ccCCCChH-----------------------HHHHHHHhcCceEEEEcCCCHHHHhh
Q 010532 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEMLK 166 (508)
Q Consensus 133 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~ 166 (508)
. .+.+. ++...+++.++.++++....+..+.+
T Consensus 167 ~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 I--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred c--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 3 33444 66778999999999988766655543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=83.68 E-value=16 Score=36.96 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=85.2
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH--HH-HHHHHHhhCCeee
Q 010532 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--II-GMEACNALGLHCV 131 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~v 131 (508)
.|+.+|++... .+.++ .-..+|.+.+...+..... ..++.++|++...+|-.-.+ .. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46777777661 22223 2367899988877665544 34788999988888765333 32 4788889999888
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhc---CCCCCCCccEEEEeCCC
Q 010532 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT---FPKTTEHLKTIVSFSKV 184 (508)
Q Consensus 132 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~l~~vi~~~~~ 184 (508)
..+ ...++.+...+++.++.+++.....+..+.+. .......++.+++.+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 654 46889999999999999999888766655432 22334778888776654
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=83.12 E-value=7 Score=39.80 Aligned_cols=122 Identities=12% Similarity=-0.024 Sum_probs=82.9
Q ss_pred CCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH--HHHHHHHHhhCCeeeecc
Q 010532 59 NNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--IIGMEACNALGLHCVPLY 134 (508)
Q Consensus 59 d~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 134 (508)
+.+|++... .+.++ .-..+|.+.+...+......+...++.++|++...+|-.-.+ ...+++++ .|+.++.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 667776551 22222 226789999887766554433335788999988887765332 33356667 999888765
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC---CCCCCccEEEEeCCC
Q 010532 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~l~~vi~~~~~ 184 (508)
...++.+...+++.++.+++.....+..+.+... .....++.++..+..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 5788999999999999999998877776655322 123677777775544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 508 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 5e-48 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 5e-42 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 5e-38 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 6e-37 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-21 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 6e-18 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-07 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 9e-16 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-05 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 173 bits (440), Expect = 5e-48
Identities = 66/482 (13%), Positives = 143/482 (29%), Gaps = 87/482 (18%)
Query: 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+ ++ N + + ++ +Y+E++ V + N + G+++
Sbjct: 74 AANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDLGIKKGDV 130
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK------ 159
IY PE + M AC +G ++ AV I S + ++
Sbjct: 131 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGR 190
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
IP T V V +I+ W + ++ + +
Sbjct: 191 SIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM- 249
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D I+YTSG+TG PKGV+ + + + A + D+Y +
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD----YHPGDIYWCTADVGW 305
Query: 280 IFDRAIEEVF--ISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
+ ++ ++ GA + G + + + + + I P + +
Sbjct: 306 VTG-HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL---- 360
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ +G K +E + + +R++ S
Sbjct: 361 -------------------------MAEGDKAIEGTDRS--------------SLRILGS 381
Query: 393 GAAPLTPHV-ETFLRVV--ACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTVGPPVPNVD 448
P+ P E + + + V+ + TET LP + + G+ P V
Sbjct: 382 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQ 441
Query: 449 VCL-----ESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKE---VMVDGWFH 498
L G + + S + + ++ +
Sbjct: 442 PALVDNEGHPQEGAT--------EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493
Query: 499 TG 500
+G
Sbjct: 494 SG 495
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 155 bits (392), Expect = 5e-42
Identities = 91/480 (18%), Positives = 156/480 (32%), Gaps = 84/480 (17%)
Query: 35 GFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93
FP+ + + WD A + + G+ TY EVY +++
Sbjct: 1 AFPSTMMDEELNLWDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMG 55
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+R GV + G N + A +G L + +I+ H+ +
Sbjct: 56 GLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 115
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213
+ P +L LKT+ F + + E Y A+ + +++ E
Sbjct: 116 LLFD----PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPE--- 168
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
C + YT+GTTG PKGV+ S+ +V + L+ +DV +
Sbjct: 169 --------RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV---DGTALSEKDVVLP 217
Query: 274 YLPLAHIFDRAIEEVFISNGAAIGF--WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
+P+ H+ + GA R D L+E T VP V +
Sbjct: 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD- 276
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+ + ++ L R ++
Sbjct: 277 ---------------YLESTGHRLKTL-----------------------------RRLV 292
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----------MSMIGTVG 441
G + + + V QGYGLTET + +++ G
Sbjct: 293 VGGSAAPRSLIARFERMGV-EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 351
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
P+P V + + E GEV +KG + GYY E+ T+ + DG+F TG
Sbjct: 352 LPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 410
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (366), Expect = 5e-38
Identities = 74/478 (15%), Positives = 145/478 (30%), Gaps = 76/478 (15%)
Query: 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERG 104
C++ + PN + + G+ TYKE+ + V +V + GV +
Sbjct: 61 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYSMGVRKGD 117
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI-----AFVEEK 159
+Y PE II + A + +G ++ + ++ I +
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
K+ E + + + + + W + +
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK-KYKTYYPCTPV 236
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D ++YTSG+TG PKGV S + EDV+ + +
Sbjct: 237 DSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTAGDIGW 292
Query: 280 IFDRAIEEVF--ISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
I V+ + G A + G + + I E K T F P L +
Sbjct: 293 ITG-HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL---- 347
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ G ++E + +R + S
Sbjct: 348 -------------------------KRAGDSYIENHSLK--------------SLRCLGS 368
Query: 393 GAAPLTPHV-ETFLRVVACA--HVLQGYGLTETCAGTFVSLPNEMSMI--GTVGPPVPNV 447
P+ V E + + ++ Y TE+ + L ++ + G+ P +
Sbjct: 369 VGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGI 428
Query: 448 DVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKEVMV---DGWFHTG 500
D + P + +S G + VK + + +K D + + G++ TG
Sbjct: 429 DAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG 485
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 141 bits (355), Expect = 6e-37
Identities = 88/470 (18%), Positives = 165/470 (35%), Gaps = 65/470 (13%)
Query: 37 PAPIPGME--SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNA 94
PAP +E + + A++R G D + TY E +++ +++ A
Sbjct: 8 PAPFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEA 63
Query: 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154
++ G+ + + N ++ + + +G+ P D + + S ++
Sbjct: 64 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123
Query: 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQF 214
FV +K + ++L K K I+ SK + + + + L G N+
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYD 177
Query: 215 DLP--VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272
+P + I IM +SG+TG PKGV + + + + + ++ + +
Sbjct: 178 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDTAIL 235
Query: 273 SYLPLAHIFDRAIEEVFISNGAAIGFWR-GDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
S +P H F ++ G + + +L L + + K VP +
Sbjct: 236 SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK- 294
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+ Y NL +
Sbjct: 295 ---------------STLIDKYDLSNLH----------------------------EIAS 311
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451
GA E + + QGYGLTET + ++ P G VG VP + +
Sbjct: 312 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKV 370
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
+ + L RGE+CV+G + SGY + T ++ DGW H+G
Sbjct: 371 VDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 418
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 95.9 bits (237), Expect = 1e-21
Identities = 69/461 (14%), Positives = 134/461 (29%), Gaps = 82/461 (17%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ ++ R A R P++ L V + + T+ E+ V V + G+
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL----AVPARGLRL---THAELRARVEAVAARLHADGLRP 53
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + + N + +I + A + LG L L + + +I ++ A + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ ++ + I + + P ++
Sbjct: 112 QVADAIFQSGSGARIIF------------------LGDLVRDGEPYSYGPPIEDPQREPA 153
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I YTSGTTG PK ++ + + + V + +V + +PL H+
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVG 210
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
V ++ A G + + D +L L
Sbjct: 211 --FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD----------AL 258
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
+ S K +L R + A + V
Sbjct: 259 AAAAAHAGSSLKLDSL-----------------------------RHVTFAGATMPDAVL 289
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS----MIGTVGPPVPNVDVCLESVPEME 458
+ + YG TE ++ P + + V E V E
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHT 499
L + + F GY + T E + DGW+ T
Sbjct: 350 EGEL-------IVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 84.2 bits (207), Expect = 6e-18
Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 39/206 (18%)
Query: 38 APIPGMESCWDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAI 95
A P ++ +F V + PNN + ++ TY E+ ++
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQL-----------TYHELNVKANQLARIF 65
Query: 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155
G+ + GI + IG+ A G VP+ +++I+ S +
Sbjct: 66 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 125
Query: 156 VEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFD 215
++ + + I+ G ++ +++ E
Sbjct: 126 TQKHLVHLI-------------------------HNIQFNGQVEIFEEDTIKIREGTNLH 160
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVM 241
+P K D+ ++YTSGTTG+PKG M
Sbjct: 161 VPS-KSTDLAYVIYTSGTTGNPKGTM 185
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 51.4 bits (122), Expect = 1e-07
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
++ +++ + +P + + YG TET + + IG P
Sbjct: 279 IQTLITAGSATSP--SLVNKWKEKVTYINAYGPTETTICATTWVATKE-TIGHSVPIGAP 335
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ + + S GE+C+ G + GY+KR +LT + VD F G
Sbjct: 336 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 389
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 77.3 bits (189), Expect = 9e-16
Identities = 24/215 (11%), Positives = 72/215 (33%), Gaps = 21/215 (9%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
E+ D+ R + + R + + +Y+E+ ++ + G++++
Sbjct: 25 ETFGDLLRDRAAKYGD------RIAITCGNTHW---SYRELDTRADRLAAGFQKLGIQQK 75
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
+ + N E+ + A LG V + + + + + + + +
Sbjct: 76 DRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF 135
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
++ + + + V E L+ + LP K +D
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVAGE------------AEEFLPLEDLHTEPVKLPEVKSSD 183
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ + + G+TG K + ++++ + + +
Sbjct: 184 VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 43.1 bits (100), Expect = 6e-05
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDV 449
+ G A + ++ V + Q +G+ E E ++ T G P+ D
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDE 362
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPH 503
+ G + +G GYYK E+ + F+
Sbjct: 363 SRVWDDHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=8.6e-56 Score=461.43 Aligned_cols=396 Identities=21% Similarity=0.282 Sum_probs=329.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010532 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
++..||+++|+++++++||++|+++. + .+..+++||+||.+++.++|+.|.+.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 45568999999999999999999876 3 344578999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010532 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|||+++|++++|+++.++.+++.++++.+++++++++.............. ..++..+......... ..
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~ 151 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAPEG----------YL 151 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGC-SSCCEEEESSSCCCTT----------CE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcc-cccceeEEeecccccc----------cc
Confidence 999999999999999999999999999999999999998877766655444 5666666655443210 11
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010532 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
.... . ...........++++++++|||||||.||+|.++|.+++....... ..........+++++.+|++|.
T Consensus 152 ~~~~-~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~ 224 (534)
T d1v25a_ 152 AYEE-A---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHV 224 (534)
T ss_dssp EHHH-H---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT---STTTTCCCTTCEEEECSCTTSH
T ss_pred cccc-c---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhh---hhcccccccccccccccchhhh
Confidence 1111 1 1122233455788999999999999999999999999987654432 2233456788999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010532 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+++...+..+..|+.+++.+. ++..+...+.++++|++.++|.++..+........
T Consensus 225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~---------------------- 282 (534)
T d1v25a_ 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG---------------------- 282 (534)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT----------------------
T ss_pred ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccc----------------------
Confidence 999888888778887777654 89999999999999999999999998876433321
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCc----
Q 010532 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM---- 434 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~---- 434 (508)
...+++|.+++||+++++++.+.+++ ++..+++.||+||++..+........
T Consensus 283 -----------------------~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~ 338 (534)
T d1v25a_ 283 -----------------------HRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESL 338 (534)
T ss_dssp -----------------------CCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------------ccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCcccccc
Confidence 12258999999999999999999886 58899999999999998876543321
Q ss_pred ------ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 435 ------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 435 ------~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
...+++|+|+||++++|+| +++++++.+.++.|||+|+|++++.||+++++.+.+.| .||||+|||+|++.
T Consensus 339 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~ 416 (534)
T d1v25a_ 339 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 416 (534)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred CccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEEC
Confidence 1246899999999999999 99999999888999999999999999999999999999 89999999999975
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.8e-56 Score=474.46 Aligned_cols=405 Identities=14% Similarity=0.185 Sum_probs=320.8
Q ss_pred CCH-HHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESC-WDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl-~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.|+ .++|+++++.+||++|+++. ....+..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 71 ~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA 147 (643)
T d1pg4a_ 71 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 147 (643)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHH
Confidence 344 45677888999999999986 44555668999999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhc-CCCCCCCccEEEEeCCCChhhHHHH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKT-FPKTTEHLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~-~~~~~~~l~~vi~~~~~~~~~~~~~ 192 (508)
|+++|++++|+++.++.+++..++++++++++|+++... ...... .......+..++++........
T Consensus 148 ~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--- 224 (643)
T d1pg4a_ 148 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 224 (643)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc---
Confidence 999999999999999999999999999999999987531 112111 1223366777877665432110
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEE
Q 010532 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
........+.+..... .........+++++++|+|||||||.||||+++|++++........ ....+.++|+++
T Consensus 225 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~----~~~~~~~~d~~~ 298 (643)
T d1pg4a_ 225 -WQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK----YVFDYHPGDIYW 298 (643)
T ss_dssp -CCBTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH----HHTTCCTTCEEE
T ss_pred -cccccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHH----HhhCCCCCCEEE
Confidence 0011233444444433 2333444567899999999999999999999999997655443221 223678999999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHH
Q 010532 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (508)
+.+|++|.+++.. ++.+|++|+++++++. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 299 ~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~----------- 367 (643)
T d1pg4a_ 299 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA----------- 367 (643)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG-----------
T ss_pred EeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh-----------
Confidence 9999999999876 6677999999999753 7899999999999999999999999886521110
Q ss_pred HHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccCC
Q 010532 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (508)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~ 423 (508)
.+ ....++||.+++||+++++++.+++.+.++ +.+++.||+||+|
T Consensus 368 ------------------------~~--------~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g 415 (643)
T d1pg4a_ 368 ------------------------IE--------GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415 (643)
T ss_dssp ------------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred ------------------------cc--------ccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhcc
Confidence 01 111258999999999999999999999884 7799999999999
Q ss_pred cceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---ccCce
Q 010532 424 AGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWF 497 (508)
Q Consensus 424 ~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~gw~ 497 (508)
+.++...+.. ...++++|+|++|++++|+| ++|++++. ++.|||+|+| |+++.|||++++.+.+.+ .+|||
T Consensus 416 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~--g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 492 (643)
T d1pg4a_ 416 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 492 (643)
T ss_dssp SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred ceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCC--CceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence 8776655443 34468999999999999999 88876654 4899999999 578999999999888776 48999
Q ss_pred ecCcccccc
Q 010532 498 HTGCPHLFL 506 (508)
Q Consensus 498 ~TGD~g~~~ 506 (508)
+|||+|+++
T Consensus 493 ~TGDl~~~d 501 (643)
T d1pg4a_ 493 FSGDGARRD 501 (643)
T ss_dssp EEEEEEEEC
T ss_pred EcCCEEEEC
Confidence 999999975
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.2e-54 Score=453.34 Aligned_cols=405 Identities=19% Similarity=0.268 Sum_probs=319.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCC---ceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcC
Q 010532 35 GFPAPIPGMESCWDVFRMAVERNPNNR---MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV 111 (508)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~a~~~pd~~---al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~ 111 (508)
+.|-.+.+..|+.+.|.+++++++++| |+++. +.. +++||+||.+++.++|+.|+++|+++||+|+|+++
T Consensus 8 p~p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ 80 (541)
T d1lcia_ 8 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 80 (541)
T ss_dssp CCCSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeC
Confidence 444455566799999999999985554 55433 222 57999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHH
Q 010532 112 NCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191 (508)
Q Consensus 112 n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~ 191 (508)
|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.+..... +..+.+++++.....
T Consensus 81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---- 155 (541)
T d1lcia_ 81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY---- 155 (541)
T ss_dssp SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB----
T ss_pred CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccc-cccceeeeecCCccc----
Confidence 999999999999999999999999999999999999999999999998887776665444 777788777654321
Q ss_pred HhhcCcEEeeHHHHHHcccC------CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC
Q 010532 192 IEKYGLAVYSWDEFLQLGEN------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (508)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (508)
.....+.+....... ...+.....++++++|+|||||||.||+|+++|++++......... ......
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~--~~~~~~ 228 (541)
T d1lcia_ 156 -----QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDP--IFGNQI 228 (541)
T ss_dssp -----TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCT--TTSCCC
T ss_pred -----cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhh--cccccc
Confidence 122334443332211 1122333466889999999999999999999999998876664432 223356
Q ss_pred CCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHH
Q 010532 266 TSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344 (508)
Q Consensus 266 ~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~ 344 (508)
...+++++.+|++|..+....+..+..++.++.... +.......+..++++.+..+|.++..+.+......
T Consensus 229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~-------- 300 (541)
T d1lcia_ 229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-------- 300 (541)
T ss_dssp CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGG--------
T ss_pred cccccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccc--------
Confidence 788999999999999998888888888888777766 89999999999999999999999988765211110
Q ss_pred HHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCC-ceEeccCcccCC
Q 010532 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETC 423 (508)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~-~v~~~yG~tE~~ 423 (508)
...++++.+++||+++++.+.+.+.+.++. .+++.||+||++
T Consensus 301 -------------------------------------~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 343 (541)
T d1lcia_ 301 -------------------------------------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETT 343 (541)
T ss_dssp -------------------------------------SCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGS
T ss_pred -------------------------------------cccccceEEEecccccccccccccccccCCceeeecCCccccC
Confidence 111489999999999999999999998875 689999999999
Q ss_pred cceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcc
Q 010532 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCP 502 (508)
Q Consensus 424 ~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~ 502 (508)
+.++....... .++++|+|+||++++|+|.+++..++ .|+.|||+|+|++++.||+++++.+...+ .+|||+|||+
T Consensus 344 ~~~~~~~~~~~-~~~svG~p~~~~~~~i~d~d~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl 420 (541)
T d1lcia_ 344 SAILITPEGDD-KPGAVGKVVPFFEAKVVDLDTGKTLG--VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDI 420 (541)
T ss_dssp SCSEECCCC----CCCCBEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEE
T ss_pred ceEEecCcccC-CCCccccccCCCEEEEEECCCCcCCC--CCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCe
Confidence 98887765543 34899999999999999944454444 55899999999999999999999998888 7899999999
Q ss_pred cccc
Q 010532 503 HLFL 506 (508)
Q Consensus 503 g~~~ 506 (508)
|+++
T Consensus 421 ~~~~ 424 (541)
T d1lcia_ 421 AYWD 424 (541)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 9975
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-54 Score=460.31 Aligned_cols=408 Identities=17% Similarity=0.203 Sum_probs=317.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
|...++|+++++++||++|+++. ....+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++||
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA 135 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 135 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 34578899999999999999976 444555589999999999999999997 67999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH--------HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
|+++|++++|+++.++.+++..+++++++++++++.... .............+.............. ..
T Consensus 136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 212 (640)
T d1ry2a_ 136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AF 212 (640)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CC
T ss_pred hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---cc
Confidence 999999999999999999999999999999999987532 2222222222244444444433221100 00
Q ss_pred cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
.......+....... .......+..++++++|+|||||||.||||+++|++++........ ....+.++|++++.
T Consensus 213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~----~~~~~~~~d~~l~~ 287 (640)
T d1ry2a_ 213 HAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMR----YTFDTHQEDVFFTA 287 (640)
T ss_dssp CSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHH----HHSCCCSSCEEEEC
T ss_pred ccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHH----hhcCCCcccceeec
Confidence 011122222222222 2233344457789999999999999999999999998776654322 22367899999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHH
Q 010532 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (508)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (508)
+|++|.++... ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 354 (640)
T d1ry2a_ 288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY------------- 354 (640)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS-------------
T ss_pred cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc-------------
Confidence 99999999876 6677999999888754 7899999999999999999999998875411000
Q ss_pred HHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccCCcc
Q 010532 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCAG 425 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~~ 425 (508)
.+. ..+++||.+++||+++++++.+++++.+| +.+++.||+||++..
T Consensus 355 ----------------------~~~--------~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~ 404 (640)
T d1ry2a_ 355 ----------------------IEN--------HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH 404 (640)
T ss_dssp ----------------------SSS--------CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred ----------------------ccc--------CCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence 001 11248999999999999999999999885 469999999999987
Q ss_pred eeccCCCC--cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---ccCcee
Q 010532 426 TFVSLPNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFH 498 (508)
Q Consensus 426 ~~~~~~~~--~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~gw~~ 498 (508)
+....... ...++++|+|++|++++|+| +++.....+.+..|||+++| |+++.|||++++.+.+.| .+|||+
T Consensus 405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~ 483 (640)
T d1ry2a_ 405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF 483 (640)
T ss_dssp SEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEE
T ss_pred cccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEE
Confidence 76655443 23468999999999999999 77766666566789999999 689999999999999887 359999
Q ss_pred cCcccccc
Q 010532 499 TGCPHLFL 506 (508)
Q Consensus 499 TGD~g~~~ 506 (508)
|||+|+++
T Consensus 484 TGDlg~~d 491 (640)
T d1ry2a_ 484 TGDGAAKD 491 (640)
T ss_dssp EEEEEEEC
T ss_pred cCCceeEC
Confidence 99999975
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.1e-49 Score=412.98 Aligned_cols=376 Identities=18% Similarity=0.240 Sum_probs=304.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch
Q 010532 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (508)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~ 114 (508)
.+....+...||.++|+++|+++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+++++|++
T Consensus 14 ~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~ 84 (514)
T d1amua_ 14 NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI 84 (514)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CCCCCCCCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCH
Confidence 34444567799999999999999999999864 3 68999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010532 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 115 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... ........
T Consensus 85 ~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~---------- 149 (514)
T d1amua_ 85 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEED---------- 149 (514)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCS----------
T ss_pred HHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----cccccccc----------
Confidence 999999999999999999999999999999999999999999988776655443211 11111111
Q ss_pred cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010532 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
............+..++++++|+|||||||.||+|.++|.++.......... ......+++++.
T Consensus 150 -----------~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~-----~~~~~~d~~l~~ 213 (514)
T d1amua_ 150 -----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENS-----LNVTEKDRIGQF 213 (514)
T ss_dssp -----------TTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHT-----SCCCTTCEEEEC
T ss_pred -----------cccccccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccccc-----ccccccccccce
Confidence 1111112222334567899999999999999999999999999998885444 478899999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHH
Q 010532 275 LPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (508)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
+|++|..++..++.++..|+.+++... +...+++.+..+.++.+..+|.......
T Consensus 214 ~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 272 (514)
T d1amua_ 214 ASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD--------------------- 272 (514)
T ss_dssp SCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC---------------------
T ss_pred eccccccccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc---------------------
Confidence 999999999988889999999988753 6788899999999999999987644310
Q ss_pred HHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccC
Q 010532 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (508)
.....+++.+++||+++++++.+++.+ +..+++.||+||++.+++...
T Consensus 273 ------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~ 320 (514)
T d1amua_ 273 ------------------------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWV 320 (514)
T ss_dssp ------------------------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEE
T ss_pred ------------------------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeecc
Confidence 011248999999999999999887765 678999999999998876555
Q ss_pred CCC--cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc-------cCceecCc
Q 010532 431 PNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGC 501 (508)
Q Consensus 431 ~~~--~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~-------~gw~~TGD 501 (508)
... ....++.|.+.++..+.+.| +++..++.+ +.|||+|+||+++.||+++++.+.+.|. ||||+|||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD 397 (514)
T d1amua_ 321 ATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD 397 (514)
T ss_dssp CCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred ccccccCcccccccceeeeeEeeec-ccceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEECC
Confidence 443 23346788999999999999 877766665 8999999999999999999999988872 68999999
Q ss_pred ccccc
Q 010532 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|+++
T Consensus 398 ~g~~d 402 (514)
T d1amua_ 398 QARWL 402 (514)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99874
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.4e-48 Score=406.63 Aligned_cols=386 Identities=15% Similarity=0.179 Sum_probs=309.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010532 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
.||.++|+++|+++||++|+++. + +++||+||.+++.++|+.|++.|+++||+|+|+++|++++++++|||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 69999999999999999999864 2 57999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHH----HhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010532 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE----MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~----~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+++|++++|+++.++.+++.++++.++++++++++..... .........+.+...+....... .
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence 9999999999999999999999999999999998643211 11111111133333333322211 1
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010532 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
..++++ .......+...++|+++|+|||||||.||+|++||+++...+..+...+ .+.+++++++..|+.|
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (536)
T ss_dssp EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence 122221 1223344556789999999999999999999999999999998866655 7889999999999999
Q ss_pred HHHHHH-H-HHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 280 IFDRAI-E-EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 280 ~~g~~~-~-~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.+++.. . ...+..|.+++..+. ++..++..+++++++.+..+|..+..+.........
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 295 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD------------------- 295 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC-------------------
T ss_pred ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhcccccc-------------------
Confidence 999864 3 334566777777665 999999999999999999999999887654333211
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCccc
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~ 436 (508)
..++++.+++||+++++.+.+++.+.++......|+.+|.+..+..........
T Consensus 296 --------------------------~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (536)
T d1mdba_ 296 --------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII 349 (536)
T ss_dssp --------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred --------------------------ccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence 114789999999999999999999999999999999999877666655554445
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010532 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.+++|.|+++....++..+++.+++. ++.|||+|+|+.++.||+++++.+...+ .+|||+|||+|++.
T Consensus 350 ~~~~g~p~~~~~~~~v~~~~g~~~~~--~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~ 418 (536)
T d1mdba_ 350 VNTQGKPMSPYDESRVWDDHDRDVKP--GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418 (536)
T ss_dssp HHCCCEESSTTCEEEEECTTSCBCCT--TCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cCCcccCCCCcceEEEEcCCCCeecc--cccceeecCCCccccccccccccccccccccCccccCcccccc
Confidence 58899998755544444266665554 5899999999999999999999999888 78999999999864
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.2e-45 Score=380.37 Aligned_cols=383 Identities=19% Similarity=0.193 Sum_probs=301.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010532 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
++||.++|+++|+++||++|+++. +.. +++||+||.+++.++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 489999999999999999999876 433 6899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010532 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++++++.+++++++++++|++........... . .....++ .+
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~--~-~~~~~~i---------------------~~ 129 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ--S-GSGARII---------------------FL 129 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHH--T-TCCCEEE---------------------EH
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhh--h-ccccccc---------------------cc
Confidence 9999999999999999999999999999999999876432211110 1 1222333 33
Q ss_pred HHHHHccc----CCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010532 203 DEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 203 ~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
.++..... ..........++++++++|||||||.||+|.++|.++...+......+ .......+++++.+|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 33322211 122333456789999999999999999999999999998887754332 23456678999999998
Q ss_pred HHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010532 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
|..+... .+.+...+..+++.+. ++..+...+.+++++.+..+|..+..+..........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 268 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------ 268 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence 8777775 5555677777777665 9999999999999999999999988876543322111
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCccc
Q 010532 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~ 436 (508)
...++||.+++||+++++++...+.+.++..+.+.||++|++..+..........
T Consensus 269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~ 323 (503)
T d3cw9a1 269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE 323 (503)
T ss_dssp -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 1124899999999999999999999999999999999999988777666554333
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecC-cccccccCChhhhhhhcccCceecCcccccc
Q 010532 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~-~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.+.+.+.+.....+.+ ..+..++ .|+.|++.+.+. ....+|+++++.+.+.|.||||+|||+|++.
T Consensus 324 -~~~~~~~~~~~~~~~~-~~~~~~~--~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~ 390 (503)
T d3cw9a1 324 -MAPGFFSEVRIVRIGG-GVDEIVA--NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390 (503)
T ss_dssp -EBCCTTCCEEEECTTS-CTTCBCC--TTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred -ccccccccceeeeeec-ccCcccC--CCccccccccccccccccccCChhhhHHHhcCCceecccccccc
Confidence 4445555555555444 4444444 458898888775 5677899999999999999999999999875
|