BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010533
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSARFSD 413
G++++L+ + + + V LS L ++S NK+ + +N G++ LI R D
Sbjct: 265 GLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGD 324
Query: 414 DASVLQEVMSIITVLSLRSPEN--AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471
+ + + + L+ R PE A ++ G AI +L PN L +++ +IRN
Sbjct: 325 KDDITEPAVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRN 384
Query: 472 L 472
L
Sbjct: 385 L 385
>pdb|3M0E|A Chain A, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|B Chain B, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|C Chain C, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|D Chain D, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|E Chain E, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|F Chain F, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
pdb|3M0E|G Chain G, Crystal Structure Of The Atp-Bound State Of Walker B
Mutant Of Ntrc1 Atpase Domain
Length = 266
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC----LKTMALLVHDVQST 210
EL G +G+ AV++K G EL G LD+ L+ A L+ ++S
Sbjct: 86 ELFGYEKGAFTGAVSSKEGFFELAD--------GGTLFLDAIGELSLEAQAKLLRVIESG 137
Query: 211 ETFRTGGGPKLLVNILI 227
+ +R GG ++ VN+ I
Sbjct: 138 KFYRLGGRKEIEVNVRI 154
>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
Length = 267
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC----LKTMALLVHDVQST 210
EL G +G+ AV++K G EL G LD L+ A L+ ++S
Sbjct: 87 ELFGYEKGAFTGAVSSKEGFFELAD--------GGTLFLDEIGELSLEAQAKLLRVIESG 138
Query: 211 ETFRTGGGPKLLVNILI 227
+ +R GG ++ VN+ I
Sbjct: 139 KFYRLGGRKEIEVNVRI 155
>pdb|3OEI|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
pdb|3OEI|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
Length = 98
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLA 448
+DD QE TV LRSPENA R MEA + D A
Sbjct: 40 ADDYDAWQE-----TVYLLRSPENARRLMEAVARDXA 71
>pdb|3CTO|A Chain A, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3CTO|B Chain B, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3CTO|C Chain C, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3CTO|D Chain D, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3CTO|E Chain E, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3D55|A Chain A, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3D55|B Chain B, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3D55|C Chain C, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
pdb|3D55|D Chain D, Crystal Structure Of M. Tuberculosis Yefm Antitoxin
Length = 91
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLA 448
+DD QE TV LRSPENA R MEA + D A
Sbjct: 40 ADDYDAWQE-----TVYLLRSPENARRLMEAVARDKA 71
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC----LKTMALLVHDVQST 210
EL G +G+ AV++K G EL G LD L+ A L+ ++S
Sbjct: 207 ELFGYEKGAFTGAVSSKEGFFELAD--------GGTLFLDEIGELSLEAQAKLLRVIESG 258
Query: 211 ETFRTGGGPKLLVNILI 227
+ +R GG ++ VN+ I
Sbjct: 259 KFYRLGGRKEIEVNVRI 275
>pdb|3OEI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
pdb|3OEI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
pdb|3OEI|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
pdb|3OEI|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
pdb|3OEI|M Chain M, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
pdb|3OEI|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Reljk
(Rv3357-Rv3358- Relbe3)
Length = 98
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLA 448
+DD QE TV LRSPENA R MEA + D A
Sbjct: 40 ADDYDAWQE-----TVYLLRSPENARRLMEAVARDKA 71
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 368 LQGNKTVARICCS--LLSKLAGSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSI 424
L G+ + + C+ +LS L ++ NK + + GG++ L+ R D + + +
Sbjct: 216 LLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICA 275
Query: 425 ITVLSLR--SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS-- 480
+ L+ R E A A+ G + +L P+ L +++ +IRNL A P N
Sbjct: 276 LRHLTSRHQEAEXAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAP 334
Query: 481 ---------FCSVMVSRNLSDRQRRTTKSARMQ 504
++V R D QRRT+ Q
Sbjct: 335 LREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQ 366
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP 433
VA + SL+ AG+ S KSA+ EN D+L + AR A + S + VLS +
Sbjct: 46 VASMTASLMD--AGTGSGKSALDENAIADRLADIGARLGGGAEADRASFS-LRVLSSPAE 102
Query: 434 ENAA 437
N+A
Sbjct: 103 RNSA 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,999,512
Number of Sequences: 62578
Number of extensions: 480946
Number of successful extensions: 1414
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1376
Number of HSP's gapped (non-prelim): 81
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)