Query 010533
Match_columns 508
No_of_seqs 285 out of 1455
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4199 Uncharacterized conser 100.0 5.5E-71 1.2E-75 532.9 39.2 425 60-498 1-427 (461)
2 KOG0166 Karyopherin (importin) 100.0 3.8E-36 8.2E-41 312.1 32.6 335 124-487 68-407 (514)
3 COG5064 SRP1 Karyopherin (impo 100.0 7.7E-37 1.7E-41 296.3 25.2 335 124-488 73-415 (526)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.5E-35 5.4E-40 285.9 16.8 385 5-428 74-494 (526)
5 PLN03200 cellulose synthase-in 100.0 1.4E-32 2.9E-37 321.7 37.5 329 142-487 417-780 (2102)
6 KOG0166 Karyopherin (importin) 100.0 3.1E-33 6.6E-38 290.5 23.3 379 9-429 73-485 (514)
7 PLN03200 cellulose synthase-in 100.0 8.5E-30 1.9E-34 298.4 37.5 348 122-487 144-530 (2102)
8 KOG4224 Armadillo repeat prote 100.0 1E-26 2.2E-31 227.8 22.1 330 123-487 86-417 (550)
9 KOG4224 Armadillo repeat prote 99.9 7.3E-26 1.6E-30 221.8 26.3 331 122-487 167-506 (550)
10 KOG4199 Uncharacterized conser 99.9 9.7E-24 2.1E-28 205.3 30.3 320 142-485 120-454 (461)
11 PF05804 KAP: Kinesin-associat 99.9 4.1E-19 8.9E-24 194.4 36.7 319 146-487 266-619 (708)
12 PF05804 KAP: Kinesin-associat 99.8 1.2E-17 2.7E-22 182.8 35.6 329 123-484 291-659 (708)
13 KOG1048 Neural adherens juncti 99.7 3.4E-15 7.4E-20 160.6 30.6 338 142-492 246-701 (717)
14 KOG2122 Beta-catenin-binding p 99.7 4E-16 8.7E-21 173.4 23.0 314 147-476 212-603 (2195)
15 KOG1048 Neural adherens juncti 99.6 1.5E-13 3.2E-18 148.1 25.0 302 175-488 235-655 (717)
16 KOG4500 Rho/Rac GTPase guanine 99.6 6.9E-13 1.5E-17 133.6 26.8 341 121-487 86-490 (604)
17 KOG4500 Rho/Rac GTPase guanine 99.5 1.5E-12 3.2E-17 131.2 22.8 309 164-488 78-403 (604)
18 KOG2122 Beta-catenin-binding p 99.4 5.8E-12 1.3E-16 141.0 20.7 225 248-488 326-573 (2195)
19 PF04826 Arm_2: Armadillo-like 99.4 3.5E-11 7.6E-16 118.0 21.8 198 211-429 6-204 (254)
20 cd00020 ARM Armadillo/beta-cat 99.4 2.3E-11 5E-16 104.7 14.9 118 349-474 2-120 (120)
21 PF10508 Proteasom_PSMB: Prote 99.3 4.3E-09 9.2E-14 113.9 33.8 348 122-500 77-448 (503)
22 PF04826 Arm_2: Armadillo-like 99.2 1.2E-09 2.5E-14 107.3 20.9 195 258-474 9-205 (254)
23 cd00020 ARM Armadillo/beta-cat 99.2 2.6E-10 5.7E-15 98.0 14.6 115 308-429 3-119 (120)
24 PF10508 Proteasom_PSMB: Prote 99.2 4.6E-08 9.9E-13 105.9 30.3 305 142-474 51-366 (503)
25 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.5E-09 5.3E-14 108.9 18.7 230 174-420 56-304 (312)
26 cd00256 VATPase_H VATPase_H, r 99.1 4.2E-08 9E-13 102.6 27.7 285 173-476 53-427 (429)
27 KOG1222 Kinesin associated pro 99.0 1.7E-07 3.6E-12 96.3 26.7 318 145-485 279-631 (791)
28 PF03224 V-ATPase_H_N: V-ATPas 99.0 6.7E-08 1.5E-12 98.4 21.1 243 211-464 46-304 (312)
29 KOG1222 Kinesin associated pro 98.9 2E-06 4.3E-11 88.6 28.2 313 162-487 334-676 (791)
30 KOG0168 Putative ubiquitin fus 98.9 3.4E-07 7.4E-12 99.5 22.0 251 141-412 180-439 (1051)
31 PRK09687 putative lyase; Provi 98.8 9.9E-07 2.1E-11 88.3 23.9 254 124-470 25-278 (280)
32 cd00256 VATPase_H VATPase_H, r 98.8 2.5E-06 5.3E-11 89.4 26.4 275 142-430 114-425 (429)
33 KOG1293 Proteins containing ar 98.7 1.2E-05 2.6E-10 85.9 28.0 160 326-493 390-552 (678)
34 PRK09687 putative lyase; Provi 98.7 4.7E-06 1E-10 83.5 21.9 248 174-498 24-273 (280)
35 KOG0946 ER-Golgi vesicle-tethe 98.6 0.00016 3.4E-09 78.8 34.0 340 118-485 18-410 (970)
36 PRK13800 putative oxidoreducta 98.6 1.9E-05 4.2E-10 91.4 28.2 214 173-472 652-865 (897)
37 KOG0168 Putative ubiquitin fus 98.5 1.1E-05 2.4E-10 88.1 21.7 248 189-456 181-439 (1051)
38 PRK13800 putative oxidoreducta 98.5 7.1E-05 1.5E-09 86.8 28.3 211 175-471 686-896 (897)
39 KOG0946 ER-Golgi vesicle-tethe 98.4 0.0002 4.3E-09 78.1 27.1 267 211-487 55-359 (970)
40 PF01602 Adaptin_N: Adaptin N 98.4 4.7E-05 1E-09 82.8 23.1 288 142-485 127-417 (526)
41 KOG2759 Vacuolar H+-ATPase V1 98.4 0.00027 5.9E-09 72.4 25.5 279 174-475 66-439 (442)
42 KOG2160 Armadillo/beta-catenin 98.3 2E-05 4.4E-10 79.3 16.9 151 326-481 96-247 (342)
43 KOG2160 Armadillo/beta-catenin 98.3 5.6E-05 1.2E-09 76.2 19.6 183 189-385 96-280 (342)
44 KOG4646 Uncharacterized conser 98.3 2.6E-06 5.6E-11 74.1 8.4 110 371-485 30-139 (173)
45 KOG2734 Uncharacterized conser 98.3 0.00046 1E-08 71.0 25.6 263 196-473 104-399 (536)
46 PF00514 Arm: Armadillo/beta-c 98.2 1.8E-06 3.8E-11 60.2 4.8 40 388-429 1-40 (41)
47 KOG4646 Uncharacterized conser 98.2 7.4E-06 1.6E-10 71.3 9.4 147 312-474 16-162 (173)
48 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00023 5.1E-09 72.8 21.6 225 196-430 177-438 (442)
49 PF00514 Arm: Armadillo/beta-c 98.2 2.5E-06 5.5E-11 59.4 5.0 41 432-474 1-41 (41)
50 PF01602 Adaptin_N: Adaptin N 98.2 0.0005 1.1E-08 74.8 24.9 346 73-482 9-377 (526)
51 KOG2734 Uncharacterized conser 98.2 0.0013 2.9E-08 67.7 25.7 264 147-430 102-400 (536)
52 KOG1241 Karyopherin (importin) 98.1 0.0011 2.5E-08 72.2 23.8 307 147-474 148-477 (859)
53 KOG3678 SARM protein (with ste 98.0 9.3E-05 2E-09 76.3 14.3 172 254-444 173-349 (832)
54 PF09759 Atx10homo_assoc: Spin 98.0 3.2E-05 6.9E-10 64.9 7.6 69 418-486 3-71 (102)
55 KOG1293 Proteins containing ar 97.9 0.0041 8.9E-08 67.1 23.8 227 231-474 389-627 (678)
56 PF05536 Neurochondrin: Neuroc 97.9 0.021 4.6E-07 62.5 30.2 142 123-273 6-152 (543)
57 KOG3678 SARM protein (with ste 97.9 0.0011 2.4E-08 68.6 18.7 181 211-408 174-360 (832)
58 PF10165 Ric8: Guanine nucleot 97.8 0.0024 5.3E-08 68.2 21.6 265 199-476 4-339 (446)
59 PF09759 Atx10homo_assoc: Spin 97.8 0.00011 2.4E-09 61.7 8.2 68 375-442 3-71 (102)
60 KOG1789 Endocytosis protein RM 97.8 0.024 5.2E-07 64.0 28.2 296 144-454 1740-2141(2235)
61 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0037 8E-08 65.1 21.4 299 152-473 6-363 (371)
62 KOG2973 Uncharacterized conser 97.8 0.012 2.7E-07 58.3 23.3 278 177-475 7-315 (353)
63 KOG2023 Nuclear transport rece 97.8 0.0015 3.2E-08 70.4 17.8 316 121-473 127-504 (885)
64 KOG2171 Karyopherin (importin) 97.8 0.0095 2.1E-07 68.0 25.1 412 12-476 14-463 (1075)
65 PF10165 Ric8: Guanine nucleot 97.7 0.0025 5.5E-08 68.1 18.5 270 150-434 2-341 (446)
66 COG5215 KAP95 Karyopherin (imp 97.7 0.013 2.8E-07 62.4 22.6 312 142-478 147-483 (858)
67 smart00185 ARM Armadillo/beta- 97.6 0.00015 3.3E-09 49.8 5.5 39 389-429 2-40 (41)
68 smart00185 ARM Armadillo/beta- 97.6 0.00015 3.3E-09 49.8 5.1 39 433-473 2-40 (41)
69 PF05536 Neurochondrin: Neuroc 97.5 0.0076 1.6E-07 66.0 20.0 196 263-476 7-215 (543)
70 PTZ00429 beta-adaptin; Provisi 97.5 0.27 5.9E-06 55.8 32.0 295 124-477 34-329 (746)
71 KOG1241 Karyopherin (importin) 97.4 0.025 5.4E-07 62.1 21.9 278 172-474 318-626 (859)
72 PTZ00429 beta-adaptin; Provisi 97.4 0.21 4.5E-06 56.7 29.9 285 142-478 153-437 (746)
73 KOG2171 Karyopherin (importin) 97.4 0.17 3.7E-06 58.2 28.5 284 173-474 202-504 (1075)
74 KOG1789 Endocytosis protein RM 97.3 0.11 2.4E-06 59.1 25.6 265 191-476 1740-2118(2235)
75 TIGR02270 conserved hypothetic 97.2 0.065 1.4E-06 56.6 22.0 56 400-474 241-296 (410)
76 PF11841 DUF3361: Domain of un 97.0 0.018 3.9E-07 52.3 13.0 133 346-481 3-138 (160)
77 PF11841 DUF3361: Domain of un 97.0 0.024 5.3E-07 51.4 13.9 129 305-437 4-138 (160)
78 PF13764 E3_UbLigase_R4: E3 ub 96.9 0.15 3.3E-06 57.8 22.7 255 213-478 113-409 (802)
79 KOG2023 Nuclear transport rece 96.9 0.027 5.9E-07 61.0 15.0 263 174-473 129-462 (885)
80 KOG4413 26S proteasome regulat 96.8 0.21 4.6E-06 50.1 19.8 243 163-429 118-376 (524)
81 TIGR02270 conserved hypothetic 96.8 0.4 8.6E-06 50.7 22.8 224 173-486 54-277 (410)
82 PF13646 HEAT_2: HEAT repeats; 96.7 0.0055 1.2E-07 49.5 6.8 88 356-470 1-88 (88)
83 PF13646 HEAT_2: HEAT repeats; 96.7 0.0095 2.1E-07 48.1 8.0 88 314-426 1-88 (88)
84 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0049 1.1E-07 45.5 5.1 55 415-472 1-55 (55)
85 PRK14707 hypothetical protein; 96.5 0.92 2E-05 55.5 25.3 294 171-487 203-500 (2710)
86 PF14664 RICTOR_N: Rapamycin-i 96.5 0.058 1.3E-06 56.2 14.4 149 326-485 38-186 (371)
87 PF13764 E3_UbLigase_R4: E3 ub 96.3 0.63 1.4E-05 53.0 22.1 227 168-409 112-385 (802)
88 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0086 1.9E-07 44.1 5.1 54 373-428 2-55 (55)
89 PF08045 CDC14: Cell division 96.1 0.05 1.1E-06 53.4 10.7 100 143-246 105-205 (257)
90 KOG0213 Splicing factor 3b, su 96.0 1.5 3.3E-05 48.6 22.2 172 314-498 801-979 (1172)
91 KOG3665 ZYG-1-like serine/thre 95.9 0.84 1.8E-05 51.6 20.4 149 336-489 494-669 (699)
92 KOG1062 Vesicle coat complex A 95.9 2.8 6E-05 47.0 23.5 241 231-491 306-565 (866)
93 PRK14707 hypothetical protein; 95.7 3.5 7.7E-05 50.8 24.6 236 217-473 289-529 (2710)
94 PF06371 Drf_GBD: Diaphanous G 95.6 0.096 2.1E-06 48.8 10.3 113 314-430 68-187 (187)
95 KOG1517 Guanine nucleotide bin 95.6 0.79 1.7E-05 52.5 18.3 245 175-442 474-744 (1387)
96 COG5369 Uncharacterized conser 95.5 0.088 1.9E-06 55.9 10.2 174 252-441 422-605 (743)
97 COG5181 HSH155 U2 snRNP splice 95.5 1.2 2.7E-05 48.3 18.6 205 188-432 658-872 (975)
98 KOG0213 Splicing factor 3b, su 95.5 2.5 5.5E-05 46.9 21.2 222 188-452 853-1080(1172)
99 KOG1062 Vesicle coat complex A 95.5 5.7 0.00012 44.6 25.5 321 71-437 35-422 (866)
100 KOG2973 Uncharacterized conser 95.4 3.4 7.4E-05 41.5 22.9 265 142-433 16-318 (353)
101 PF08045 CDC14: Cell division 95.3 0.2 4.3E-06 49.3 11.4 101 373-474 106-207 (257)
102 PF12348 CLASP_N: CLASP N term 95.3 0.15 3.3E-06 49.0 10.7 189 231-440 19-216 (228)
103 PF07814 WAPL: Wings apart-lik 95.3 2.3 4.9E-05 44.3 19.9 286 175-480 23-361 (361)
104 COG5231 VMA13 Vacuolar H+-ATPa 95.3 2.3 4.9E-05 42.9 18.4 220 196-429 169-427 (432)
105 KOG1788 Uncharacterized conser 95.3 2.9 6.2E-05 48.2 21.0 265 151-430 664-982 (2799)
106 PF06025 DUF913: Domain of Unk 95.2 0.31 6.8E-06 51.0 13.1 115 143-259 123-243 (379)
107 PF04078 Rcd1: Cell differenti 94.9 2 4.4E-05 42.2 16.9 205 143-351 9-227 (262)
108 COG5369 Uncharacterized conser 94.9 0.13 2.8E-06 54.7 9.1 179 215-408 429-617 (743)
109 COG1413 FOG: HEAT repeat [Ener 94.9 3.8 8.1E-05 41.8 20.1 190 217-472 43-240 (335)
110 PF06025 DUF913: Domain of Unk 94.9 1.6 3.4E-05 45.8 17.3 126 146-273 77-208 (379)
111 COG1413 FOG: HEAT repeat [Ener 94.7 2.6 5.7E-05 43.0 18.4 187 173-429 43-241 (335)
112 KOG3036 Protein involved in ce 94.7 2.3 5E-05 41.3 16.2 160 189-350 92-255 (293)
113 PF12348 CLASP_N: CLASP N term 94.6 0.18 3.9E-06 48.5 8.9 157 314-484 55-216 (228)
114 KOG0212 Uncharacterized conser 94.5 0.9 2E-05 48.8 14.1 225 177-430 212-444 (675)
115 KOG4413 26S proteasome regulat 94.2 7.3 0.00016 39.5 20.6 226 231-474 94-333 (524)
116 KOG2274 Predicted importin 9 [ 94.1 11 0.00024 43.0 22.1 266 189-474 543-838 (1005)
117 KOG2999 Regulator of Rac1, req 94.1 1.3 2.8E-05 47.5 14.3 163 314-479 85-247 (713)
118 KOG1242 Protein containing ada 94.1 3.2 7E-05 45.1 17.5 251 173-457 213-467 (569)
119 COG5215 KAP95 Karyopherin (imp 94.0 9.6 0.00021 41.4 20.5 273 171-474 319-627 (858)
120 KOG1832 HIV-1 Vpr-binding prot 93.7 2.1 4.5E-05 48.4 15.4 308 163-485 384-783 (1516)
121 KOG2999 Regulator of Rac1, req 93.4 3.6 7.8E-05 44.3 16.1 157 264-434 86-246 (713)
122 PF11698 V-ATPase_H_C: V-ATPas 93.4 0.39 8.4E-06 41.5 7.6 107 66-204 3-114 (119)
123 KOG1059 Vesicle coat complex A 93.3 7.7 0.00017 43.2 18.8 215 220-474 147-365 (877)
124 KOG1517 Guanine nucleotide bin 93.3 4.3 9.3E-05 46.9 17.4 179 148-342 489-671 (1387)
125 KOG4151 Myosin assembly protei 93.3 0.95 2.1E-05 50.5 12.2 213 251-485 494-710 (748)
126 KOG2274 Predicted importin 9 [ 93.3 9.6 0.00021 43.5 19.8 236 230-488 461-703 (1005)
127 PF04063 DUF383: Domain of unk 93.2 1.2 2.7E-05 42.0 11.4 119 331-452 13-156 (192)
128 KOG3665 ZYG-1-like serine/thre 92.8 18 0.00039 41.1 21.8 160 302-466 503-689 (699)
129 KOG2611 Neurochondrin/leucine- 92.5 1.7 3.8E-05 45.9 12.1 139 266-412 16-165 (698)
130 PF11698 V-ATPase_H_C: V-ATPas 92.4 0.25 5.4E-06 42.7 5.0 81 345-430 32-115 (119)
131 KOG1077 Vesicle coat complex A 92.3 16 0.00034 40.8 19.4 93 189-290 124-216 (938)
132 KOG2259 Uncharacterized conser 92.3 5.2 0.00011 44.1 15.7 150 304-478 365-515 (823)
133 PF06371 Drf_GBD: Diaphanous G 92.2 2.5 5.5E-05 39.1 12.2 97 148-247 83-186 (187)
134 KOG1077 Vesicle coat complex A 92.0 24 0.00052 39.4 21.6 158 313-488 330-501 (938)
135 PF07814 WAPL: Wings apart-lik 91.5 11 0.00023 39.3 17.0 251 219-487 23-312 (361)
136 KOG1058 Vesicle coat complex C 91.3 29 0.00063 39.1 21.6 250 123-434 204-467 (948)
137 PF04078 Rcd1: Cell differenti 91.3 6.6 0.00014 38.7 14.0 177 235-428 66-260 (262)
138 COG5181 HSH155 U2 snRNP splice 91.1 1.8 3.8E-05 47.2 10.6 171 314-499 606-785 (975)
139 PF05004 IFRD: Interferon-rela 90.3 23 0.00049 36.1 18.3 183 232-429 56-256 (309)
140 KOG4151 Myosin assembly protei 90.2 15 0.00032 41.4 17.1 221 162-406 493-719 (748)
141 COG5231 VMA13 Vacuolar H+-ATPa 89.9 24 0.00053 35.8 17.6 227 147-387 167-428 (432)
142 KOG3036 Protein involved in ce 89.7 15 0.00033 35.9 14.6 151 236-396 96-256 (293)
143 PF14668 RICTOR_V: Rapamycin-i 89.6 2.3 4.9E-05 33.5 7.6 67 375-443 4-70 (73)
144 PF14668 RICTOR_V: Rapamycin-i 89.6 1.9 4.2E-05 33.9 7.2 67 330-399 4-70 (73)
145 PF08569 Mo25: Mo25-like; Int 89.5 28 0.0006 35.9 19.6 204 256-474 71-283 (335)
146 KOG1240 Protein kinase contain 89.2 27 0.00058 41.3 18.5 72 351-430 653-725 (1431)
147 KOG1059 Vesicle coat complex A 89.1 43 0.00093 37.6 23.9 184 263-480 146-353 (877)
148 KOG1242 Protein containing ada 88.8 33 0.00073 37.5 18.1 198 219-453 136-343 (569)
149 KOG4464 Signaling protein RIC- 88.5 35 0.00077 35.8 17.9 218 189-410 110-367 (532)
150 PF08324 PUL: PUL domain; Int 88.4 2.2 4.9E-05 42.1 8.7 167 314-482 65-239 (268)
151 KOG1824 TATA-binding protein-i 88.1 58 0.0012 37.8 25.0 186 265-486 861-1048(1233)
152 KOG1060 Vesicle coat complex A 87.8 55 0.0012 37.2 21.2 87 188-289 120-208 (968)
153 COG5209 RCD1 Uncharacterized p 86.6 10 0.00023 36.4 11.2 125 149-275 65-203 (315)
154 PF11701 UNC45-central: Myosin 86.2 5 0.00011 36.5 8.9 147 314-470 5-155 (157)
155 KOG2611 Neurochondrin/leucine- 85.9 54 0.0012 35.2 18.8 123 233-365 25-163 (698)
156 KOG1060 Vesicle coat complex A 85.3 12 0.00025 42.3 12.4 170 272-485 298-469 (968)
157 KOG0567 HEAT repeat-containing 85.2 41 0.0009 33.3 15.0 77 329-429 203-279 (289)
158 smart00638 LPD_N Lipoprotein N 85.1 19 0.0004 39.9 14.6 141 313-471 394-542 (574)
159 COG5096 Vesicle coat complex, 84.8 48 0.001 37.8 17.2 52 373-428 142-193 (757)
160 COG5240 SEC21 Vesicle coat com 84.7 67 0.0015 35.3 17.9 270 120-452 301-578 (898)
161 PF02985 HEAT: HEAT repeat; I 84.7 2 4.4E-05 27.5 4.1 28 401-430 2-29 (31)
162 KOG1832 HIV-1 Vpr-binding prot 84.5 4.1 8.8E-05 46.2 8.5 193 245-441 530-783 (1516)
163 KOG1061 Vesicle coat complex A 83.8 26 0.00056 39.4 14.3 94 188-292 98-191 (734)
164 KOG0212 Uncharacterized conser 83.4 55 0.0012 35.8 16.0 196 261-481 250-452 (675)
165 KOG1788 Uncharacterized conser 83.3 12 0.00026 43.5 11.4 197 240-453 663-960 (2799)
166 KOG1061 Vesicle coat complex A 83.2 63 0.0014 36.5 17.0 189 219-442 348-539 (734)
167 KOG2259 Uncharacterized conser 83.0 22 0.00047 39.5 13.0 75 345-430 364-439 (823)
168 KOG4535 HEAT and armadillo rep 82.5 3.3 7.1E-05 44.0 6.5 187 235-431 407-604 (728)
169 PF04063 DUF383: Domain of unk 82.4 8.5 0.00018 36.3 8.9 130 278-408 12-156 (192)
170 PF12755 Vac14_Fab1_bd: Vacuol 81.5 12 0.00027 31.1 8.6 66 399-472 27-94 (97)
171 PF05004 IFRD: Interferon-rela 80.8 68 0.0015 32.6 18.4 195 62-286 34-253 (309)
172 PF12719 Cnd3: Nuclear condens 79.6 72 0.0016 32.1 18.4 189 230-429 38-232 (298)
173 PF12031 DUF3518: Domain of un 79.4 5.1 0.00011 38.9 6.3 83 373-455 139-228 (257)
174 KOG1943 Beta-tubulin folding c 79.4 28 0.00061 40.6 13.0 156 312-477 341-503 (1133)
175 KOG4653 Uncharacterized conser 78.4 97 0.0021 35.7 16.4 227 219-472 726-962 (982)
176 PF12717 Cnd1: non-SMC mitotic 77.7 17 0.00038 33.5 9.3 91 327-431 2-93 (178)
177 PF11701 UNC45-central: Myosin 77.5 29 0.00062 31.5 10.5 149 218-383 4-155 (157)
178 KOG1240 Protein kinase contain 77.4 1.5E+02 0.0032 35.6 17.9 271 175-473 424-724 (1431)
179 KOG1248 Uncharacterized conser 76.0 1.8E+02 0.0039 34.7 20.0 233 230-486 665-911 (1176)
180 KOG1991 Nuclear transport rece 75.3 1.7E+02 0.0037 34.2 22.2 243 173-434 410-675 (1010)
181 KOG1058 Vesicle coat complex C 73.3 1.7E+02 0.0038 33.3 19.6 28 263-290 245-272 (948)
182 PF04821 TIMELESS: Timeless pr 70.7 1.2E+02 0.0025 30.2 15.3 138 166-323 33-189 (266)
183 PF12460 MMS19_C: RNAPII trans 70.3 1.5E+02 0.0033 31.3 19.2 191 219-437 191-401 (415)
184 PF12755 Vac14_Fab1_bd: Vacuol 69.3 16 0.00035 30.4 6.1 55 418-475 3-57 (97)
185 PF02985 HEAT: HEAT repeat; I 69.1 7.5 0.00016 24.8 3.2 27 263-289 2-28 (31)
186 PF08569 Mo25: Mo25-like; Int 68.6 1.5E+02 0.0032 30.6 18.5 160 306-474 70-238 (335)
187 COG5098 Chromosome condensatio 68.3 95 0.0021 35.0 13.0 106 312-434 933-1041(1128)
188 PF12719 Cnd3: Nuclear condens 67.5 1.4E+02 0.003 29.9 16.2 166 268-456 34-210 (298)
189 KOG2025 Chromosome condensatio 66.9 48 0.001 37.2 10.6 117 366-494 93-209 (892)
190 KOG2025 Chromosome condensatio 66.4 2.3E+02 0.0051 32.1 16.0 105 178-292 87-192 (892)
191 COG5240 SEC21 Vesicle coat com 66.1 2.2E+02 0.0047 31.6 22.2 64 413-483 499-562 (898)
192 PF08324 PUL: PUL domain; Int 65.9 1E+02 0.0023 30.1 12.4 146 263-421 108-265 (268)
193 KOG2676 Uncharacterized conser 64.9 6.2 0.00013 40.4 3.3 66 420-485 375-440 (478)
194 KOG1991 Nuclear transport rece 64.3 2.9E+02 0.0063 32.4 19.5 119 216-346 409-536 (1010)
195 PF12530 DUF3730: Protein of u 64.0 1.4E+02 0.0031 28.8 13.6 139 314-473 2-150 (234)
196 smart00638 LPD_N Lipoprotein N 63.2 2.4E+02 0.0052 31.1 16.1 150 312-482 357-517 (574)
197 COG5096 Vesicle coat complex, 63.1 35 0.00077 38.8 9.0 92 188-290 104-195 (757)
198 PF06685 DUF1186: Protein of u 60.4 1.8E+02 0.0039 28.7 15.4 77 172-259 72-153 (249)
199 PF01402 RHH_1: Ribbon-helix-h 60.3 16 0.00034 24.5 3.7 34 63-97 5-38 (39)
200 COG5218 YCG1 Chromosome conden 60.1 96 0.0021 34.2 11.1 117 366-496 99-217 (885)
201 PF08167 RIX1: rRNA processing 58.3 1.3E+02 0.0029 27.3 10.7 119 357-485 28-154 (165)
202 KOG0414 Chromosome condensatio 57.9 1.1E+02 0.0023 36.5 11.7 132 313-466 920-1056(1251)
203 PF01347 Vitellogenin_N: Lipop 57.5 88 0.0019 34.8 11.3 99 355-471 487-586 (618)
204 smart00288 VHS Domain present 57.5 66 0.0014 28.2 8.2 61 370-430 49-111 (133)
205 KOG0567 HEAT repeat-containing 57.5 2.1E+02 0.0045 28.5 21.9 178 215-429 65-248 (289)
206 PF06685 DUF1186: Protein of u 57.3 1.3E+02 0.0029 29.6 11.0 77 397-486 71-154 (249)
207 KOG1824 TATA-binding protein-i 57.2 3.9E+02 0.0084 31.5 22.8 40 445-486 859-899 (1233)
208 PF06972 DUF1296: Protein of u 53.5 16 0.00035 27.4 2.9 22 73-94 24-45 (60)
209 COG5209 RCD1 Uncharacterized p 53.2 73 0.0016 30.9 8.0 82 235-325 116-202 (315)
210 KOG0414 Chromosome condensatio 52.9 1.2E+02 0.0026 36.2 11.1 139 262-429 920-1063(1251)
211 KOG0301 Phospholipase A2-activ 52.2 3.9E+02 0.0085 30.1 16.9 162 190-368 558-730 (745)
212 PF01365 RYDR_ITPR: RIH domain 52.0 60 0.0013 30.7 7.6 105 349-459 38-158 (207)
213 PRK09169 hypothetical protein; 51.9 6.6E+02 0.014 32.7 22.3 144 356-505 711-861 (2316)
214 KOG2676 Uncharacterized conser 51.6 17 0.00038 37.3 3.8 65 377-441 375-440 (478)
215 KOG2062 26S proteasome regulat 51.1 1.8E+02 0.0039 33.1 11.6 128 283-430 522-653 (929)
216 KOG4464 Signaling protein RIC- 50.5 3.4E+02 0.0073 28.9 18.4 83 232-323 110-198 (532)
217 PF08167 RIX1: rRNA processing 50.2 1.6E+02 0.0034 26.8 9.8 115 314-434 27-147 (165)
218 PF11864 DUF3384: Domain of un 50.0 3.3E+02 0.0071 29.3 13.7 134 142-291 147-286 (464)
219 KOG0915 Uncharacterized conser 50.0 6E+02 0.013 31.6 20.5 130 339-475 938-1069(1702)
220 PF12031 DUF3518: Domain of un 48.9 56 0.0012 32.0 6.7 79 329-410 140-227 (257)
221 PF12830 Nipped-B_C: Sister ch 48.6 2.3E+02 0.0049 26.3 11.2 101 372-485 22-133 (187)
222 COG5116 RPN2 26S proteasome re 47.4 2.1E+02 0.0045 31.6 11.1 133 279-430 515-650 (926)
223 PF14225 MOR2-PAG1_C: Cell mor 47.3 3E+02 0.0064 27.3 15.7 189 261-476 64-256 (262)
224 COG5116 RPN2 26S proteasome re 46.7 76 0.0017 34.8 7.8 99 260-386 550-649 (926)
225 PF05918 API5: Apoptosis inhib 46.7 4E+02 0.0088 29.5 13.6 57 190-275 54-110 (556)
226 PF08713 DNA_alkylation: DNA a 46.2 63 0.0014 30.3 6.8 77 399-488 120-198 (213)
227 cd03569 VHS_Hrs_Vps27p VHS dom 45.6 1.3E+02 0.0028 26.8 8.2 69 356-429 43-113 (142)
228 KOG2137 Protein kinase [Signal 44.5 5.2E+02 0.011 29.3 15.4 244 120-409 272-518 (700)
229 PF01365 RYDR_ITPR: RIH domain 44.5 1E+02 0.0022 29.1 7.9 90 392-486 36-142 (207)
230 KOG2062 26S proteasome regulat 43.2 2.7E+02 0.0058 31.8 11.4 99 219-343 520-619 (929)
231 PF11865 DUF3385: Domain of un 43.1 2.6E+02 0.0055 25.4 9.9 134 263-428 12-155 (160)
232 cd03561 VHS VHS domain family; 42.1 2.3E+02 0.0051 24.6 9.4 95 370-474 16-112 (133)
233 cd03561 VHS VHS domain family; 42.1 2.3E+02 0.0051 24.6 9.5 71 356-430 39-112 (133)
234 TIGR02384 RelB_DinJ addiction 41.7 51 0.0011 26.6 4.5 40 62-102 7-47 (83)
235 PF04564 U-box: U-box domain; 41.2 13 0.00028 29.0 1.0 25 74-98 46-70 (73)
236 PF14225 MOR2-PAG1_C: Cell mor 41.2 3.7E+02 0.008 26.6 14.2 163 234-429 77-253 (262)
237 PF12717 Cnd1: non-SMC mitotic 40.5 2.9E+02 0.0063 25.3 17.0 93 232-343 1-93 (178)
238 PF08216 CTNNBL: Catenin-beta- 39.8 38 0.00081 28.8 3.5 35 375-409 63-97 (108)
239 cd06561 AlkD_like A new struct 39.2 1.6E+02 0.0035 27.1 8.3 75 402-488 108-184 (197)
240 cd03568 VHS_STAM VHS domain fa 39.1 2.1E+02 0.0046 25.5 8.6 70 356-430 39-110 (144)
241 KOG1248 Uncharacterized conser 38.9 7.7E+02 0.017 29.7 24.3 181 274-480 667-862 (1176)
242 PHA01748 hypothetical protein 37.3 56 0.0012 24.6 3.8 36 60-96 5-40 (60)
243 KOG4535 HEAT and armadillo rep 35.7 1.8E+02 0.004 31.4 8.4 98 373-475 448-560 (728)
244 KOG1640 Predicted steroid redu 34.2 14 0.0003 36.8 0.1 10 3-12 62-71 (304)
245 COG5218 YCG1 Chromosome conden 33.5 3.4E+02 0.0073 30.2 10.1 105 177-293 92-199 (885)
246 PF04869 Uso1_p115_head: Uso1 33.3 5.4E+02 0.012 26.2 12.1 136 356-491 36-202 (312)
247 PF08216 CTNNBL: Catenin-beta- 32.4 77 0.0017 27.0 4.3 35 331-365 64-98 (108)
248 PRK09169 hypothetical protein; 32.1 1.3E+03 0.028 30.3 23.2 110 356-472 669-780 (2316)
249 PF15127 DUF4565: Protein of u 32.1 40 0.00086 27.5 2.3 31 72-105 53-83 (91)
250 COG5611 Predicted nucleic-acid 32.0 29 0.00063 29.7 1.7 81 10-104 11-98 (130)
251 KOG2152 Sister chromatid cohes 31.5 8.4E+02 0.018 28.0 23.3 42 162-205 364-405 (865)
252 PRK11235 bifunctional antitoxi 31.3 98 0.0021 24.8 4.5 40 63-103 7-47 (80)
253 PF11864 DUF3384: Domain of un 30.7 7E+02 0.015 26.8 17.7 72 356-429 252-329 (464)
254 PF13251 DUF4042: Domain of un 30.3 4.6E+02 0.0099 24.5 10.8 142 279-430 4-174 (182)
255 cd03569 VHS_Hrs_Vps27p VHS dom 29.7 3.1E+02 0.0066 24.4 8.0 93 371-474 21-114 (142)
256 PF01347 Vitellogenin_N: Lipop 29.2 1.3E+02 0.0028 33.4 6.8 98 372-480 449-559 (618)
257 PF04499 SAPS: SIT4 phosphatas 28.9 3E+02 0.0064 29.9 9.1 107 231-340 31-146 (475)
258 PF10363 DUF2435: Protein of u 28.2 2.1E+02 0.0047 23.4 6.2 59 372-434 17-76 (92)
259 KOG1820 Microtubule-associated 28.1 7.7E+02 0.017 28.8 12.6 130 83-246 269-398 (815)
260 PF04499 SAPS: SIT4 phosphatas 27.9 3.8E+02 0.0082 29.1 9.7 38 305-342 55-92 (475)
261 KOG3946 Glutaminyl cyclase [Po 27.8 37 0.00081 33.8 1.8 42 6-48 232-291 (338)
262 KOG1078 Vesicle coat complex C 27.7 1E+03 0.022 27.6 23.4 55 412-473 477-531 (865)
263 PF00790 VHS: VHS domain; Int 27.0 1.7E+02 0.0036 25.8 5.8 85 345-429 28-117 (140)
264 PF05918 API5: Apoptosis inhib 26.5 1.5E+02 0.0032 32.8 6.2 69 373-453 37-106 (556)
265 KOG1943 Beta-tubulin folding c 25.9 1.2E+03 0.026 28.0 25.6 322 123-474 342-705 (1133)
266 KOG1020 Sister chromatid cohes 25.8 1.4E+03 0.03 28.7 15.8 139 312-472 816-958 (1692)
267 KOG0301 Phospholipase A2-activ 25.4 1E+03 0.022 27.0 17.2 178 119-326 542-730 (745)
268 cd07064 AlkD_like_1 A new stru 25.3 5.2E+02 0.011 24.4 9.3 76 402-488 118-193 (208)
269 PRK13730 conjugal transfer pil 25.0 1.3E+02 0.0028 28.7 4.8 24 77-101 95-118 (212)
270 PF04221 RelB: RelB antitoxin; 24.8 1.2E+02 0.0026 24.3 4.0 40 63-103 7-47 (83)
271 smart00288 VHS Domain present 24.7 4.7E+02 0.01 22.8 12.1 95 370-474 16-111 (133)
272 PF14726 RTTN_N: Rotatin, an a 24.2 4E+02 0.0088 22.2 7.2 50 373-424 45-94 (98)
273 PF15573 Imm27: Immunity prote 23.9 3.7E+02 0.0081 26.0 7.6 33 263-295 48-81 (259)
274 cd03567 VHS_GGA VHS domain fam 23.7 5.2E+02 0.011 22.9 8.5 70 356-429 40-115 (139)
275 PHA01623 hypothetical protein 23.7 1.3E+02 0.0029 22.2 3.8 36 59-95 15-50 (56)
276 KOG2933 Uncharacterized conser 23.6 5.5E+02 0.012 26.3 9.1 103 314-430 131-234 (334)
277 PF09324 DUF1981: Domain of un 23.1 3E+02 0.0066 22.1 6.1 69 312-384 17-85 (86)
278 PF04869 Uso1_p115_head: Uso1 23.0 8.1E+02 0.018 24.9 16.7 183 231-420 50-273 (312)
279 KOG1848 Uncharacterized conser 22.6 9.2E+02 0.02 29.8 11.8 127 276-413 901-1030(1610)
280 KOG2137 Protein kinase [Signal 22.5 1.2E+03 0.026 26.6 13.4 107 174-289 350-457 (700)
281 KOG1820 Microtubule-associated 21.9 1.3E+03 0.028 26.9 15.6 171 189-386 266-442 (815)
282 PF10363 DUF2435: Protein of u 20.2 3E+02 0.0066 22.5 5.6 77 403-485 7-84 (92)
No 1
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.5e-71 Score=532.87 Aligned_cols=425 Identities=41% Similarity=0.615 Sum_probs=395.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHH-HHHHHHHHHhhcCCCCC
Q 010533 60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDLNSKDKF 138 (508)
Q Consensus 60 ~~~~isQetfd~~v~eni~~~~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~-~~l~~L~~~l~~~~~~~ 138 (508)
++++|+|+|||.+|+|||++|.|.|+||.+++|+||+.||++|+||+|+.+.. -....|+. ..+.++++.+.+
T Consensus 1 ~~K~i~q~tfd~~v~eni~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~-~~~~qp~i~~~~~~i~e~i~~----- 74 (461)
T KOG4199|consen 1 MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVN-PQTGQPVINETVDKIKEHIGQ----- 74 (461)
T ss_pred CchhHhHHHHHHHHHHHHHHHhcCccccchHHHHHHHhccCcccccccccCCC-CCCCCccHHHhHHHHHHHHHh-----
Confidence 46899999999999999999999999999999999999999999999998833 22333544 678888888775
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC
Q 010533 139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG 218 (508)
Q Consensus 139 ~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg 218 (508)
-+++..+.+..|...|++ +.++|....++|++|.++-++.....+++.++..+|.+|..+++++ ++++++.|
T Consensus 75 ---~~~E~s~ll~~l~d~ck~--~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g 146 (461)
T KOG4199|consen 75 ---KLEETTELLEQLADECKK--SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEA 146 (461)
T ss_pred ---hhHHHHHHHHHHHHHHhh--hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhcccc
Confidence 478888888888889998 9999999999999999998887655578889999999999998875 79999999
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhh
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
+..++++|....++.++...++.|+...|.+||.||+.||+.|+++++...|..++. .+++++||+++.|.++||+||+
T Consensus 147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~ 226 (461)
T KOG4199|consen 147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV 226 (461)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence 999999999888999999999999999999999999999999999999999987655 6999999999999999999999
Q ss_pred hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHH
Q 010533 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (508)
Q Consensus 298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~ 377 (508)
||++|+|+|+|++.|++..|+++++.+-|++.+.++|.+|+.||+++|+|+.|++.||++.|+++|.+++++++..+.+.
T Consensus 227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~ 306 (461)
T KOG4199|consen 227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKT 306 (461)
T ss_pred cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHH
Confidence 99999999999988999999999999989999999999999999999999999999999999999999888877789999
Q ss_pred HHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC
Q 010533 378 CCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN 457 (508)
Q Consensus 378 al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~ 457 (508)
+|++|+.|||+|++|..||+.||.+.|+.++.+|+++|.|.+++|++++.||+|.|++.+.+++.|+....+++|+.||.
T Consensus 307 ~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 307 CLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhhcCccchHHHHhccccccHHHHhhh
Q 010533 458 AQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTT 498 (508)
Q Consensus 458 ~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~~~~~~~ 498 (508)
.+.|||+|||+||||++|+.++++.++.-|..-.-++.++.
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~ 427 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN 427 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc
Confidence 99999999999999999999999999999987776766654
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-36 Score=312.10 Aligned_cols=335 Identities=14% Similarity=0.170 Sum_probs=290.6
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
...+...+-+. +.+.+..+...+|++.+.+.+|+ .......|+||.+|.+|+.. .++.++..|.|+|+++
T Consensus 68 ~~~~~~~~~S~-------~~~~q~~a~~~~rkllS~~~~pp-i~~vi~~G~v~~lV~~l~~~--~~~~lq~eAAWaLTnI 137 (514)
T KOG0166|consen 68 LELMLAALYSD-------DPQQQLTATQAFRKLLSKERNPP-IDEVIQSGVVPRLVEFLSRD--DNPTLQFEAAWALTNI 137 (514)
T ss_pred hHHHHHHHhCC-------CHHHHHHHHHHHHHHHccCCCCC-HHHHHHcCcHHHHHHHHccC--CChhHHHHHHHHHHHH
Confidence 44455555554 78889999999999988754544 44555569999999999865 4678999999999999
Q ss_pred hcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHH
Q 010533 204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSL 281 (508)
Q Consensus 204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A 281 (508)
+.+. +.+..++++|++|.++.+|. +.+..+++.|.|+|++++.+++..|+.++..|++++|+.++..... ..++++
T Consensus 138 Asgtse~T~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~ 215 (514)
T KOG0166|consen 138 ASGTSEQTKVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNA 215 (514)
T ss_pred hcCchhhccccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHH
Confidence 8776 44688899999999999997 4689999999999999999999999999999999999999998765 789999
Q ss_pred HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHH
Q 010533 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALL 360 (508)
Q Consensus 282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv 360 (508)
.|+|+|||.+.++..++. .+. .++|.|..+|.+ +|++++.++||||++|+. .+|..+.+++.|+++.|+
T Consensus 216 tW~LsNlcrgk~P~P~~~-------~v~--~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV 285 (514)
T KOG0166|consen 216 TWTLSNLCRGKNPSPPFD-------VVA--PILPALLRLLHS-TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLV 285 (514)
T ss_pred HHHHHHHHcCCCCCCcHH-------HHH--HHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHH
Confidence 999999999988766543 222 568999999986 589999999999999995 789999999999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533 361 RCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (508)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i 439 (508)
.+|.... . .++..|+.+++|++ |+|...+.+++.|++|.|..+|..+. ...+++.|||+|+|++.+++++.+++
T Consensus 286 ~lL~~~~--~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaV 360 (514)
T KOG0166|consen 286 DLLGHSS--P--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAV 360 (514)
T ss_pred HHHcCCC--c--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHH
Confidence 9998642 2 68899999999995 78899999999999999999998433 35699999999999999999999999
Q ss_pred HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-cCccchHHHHhcc
Q 010533 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENSFCSVMVS 487 (508)
Q Consensus 440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~-~~~e~~~~~~~~g 487 (508)
+++|.+|.|+.+|++ .+.++|++|||||.|+++ +++++..++++.|
T Consensus 361 ida~l~p~Li~~l~~--~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g 407 (514)
T KOG0166|consen 361 IDANLIPVLINLLQT--AEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG 407 (514)
T ss_pred HHcccHHHHHHHHhc--cchHHHHHHHHHHHhhcccCCHHHHHHHHHcC
Confidence 999999999999975 468999999999999986 6899999999998
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-37 Score=296.34 Aligned_cols=335 Identities=13% Similarity=0.151 Sum_probs=288.2
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
+..|...+-+. |.+.+.++...+|++.+++ ..+...-++++|+||.+|++|... ....++..|.|+|+++
T Consensus 73 lp~lt~~l~Sd-------Die~q~qav~kFR~~LS~E-~~PPIq~VIdaGvVpRfvefm~~~--q~~mlqfEAaWalTNi 142 (526)
T COG5064 73 LPQLTQQLFSD-------DIEQQLQAVYKFRKLLSKE-TSPPIQPVIDAGVVPRFVEFMDEI--QRDMLQFEAAWALTNI 142 (526)
T ss_pred hHHHHHHHhhh-------HHHHHHHHHHHHHHHhccc-cCCCchhHHhccccHHHHHHHHhc--chhHHHHHHHHHHhhh
Confidence 44555556665 8999999999999988874 344456788999999999999764 2346677889999998
Q ss_pred hcCCc-chhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--HHHHH
Q 010533 204 VHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQS 280 (508)
Q Consensus 204 ~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--~~~~~ 280 (508)
+.+.. .+..++++|++|.++.+|. +.+.+|.+++.|+|++++.+++..|+.+.+.|++.+|+.+|.+... ..+++
T Consensus 143 aSGtt~QTkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 143 ASGTTQQTKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred ccCcccceEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence 87763 3477889999999999997 4588999999999999999999999999999999999999997644 88999
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~L 359 (508)
+.|+|+|||++..+... +..|. .++|.|.+|+-+. |++++.++||++++|+. .+|..+.|.+.|..+.|
T Consensus 221 ~TWtLSNlcRGknP~P~-------w~~is--qalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL 290 (526)
T COG5064 221 ATWTLSNLCRGKNPPPD-------WSNIS--QALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290 (526)
T ss_pred hHHHHHHhhCCCCCCCc-------hHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence 99999999998876543 22333 3689999999864 78999999999999998 66778899999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~ 438 (508)
+++|.+. +..++..+++.++|+. |+|...+.|+++|+++.+-.+|. +....+++.+||+|+|++.++.++.++
T Consensus 291 vElLs~~----sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs--~~ke~irKEaCWTiSNITAGnteqiqa 364 (526)
T COG5064 291 VELLSHE----SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS--SPKENIRKEACWTISNITAGNTEQIQA 364 (526)
T ss_pred HHHhcCc----cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc--ChhhhhhhhhheeecccccCCHHHHHH
Confidence 9999853 3479999999999985 78899999999999999999998 556789999999999999999999999
Q ss_pred HHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh---cCccchHHHHhccc
Q 010533 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA---RNPENSFCSVMVSR 488 (508)
Q Consensus 439 i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~---~~~e~~~~~~~~g~ 488 (508)
+++++.+|+|+.+|.. .+-.++++|||||.|..+ +-|++.++++++|-
T Consensus 365 vid~nliPpLi~lls~--ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~ 415 (526)
T COG5064 365 VIDANLIPPLIHLLSS--AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGF 415 (526)
T ss_pred HHhcccchHHHHHHHH--HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccc
Confidence 9999999999999975 467899999999999986 36999999999984
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.5e-35 Score=285.86 Aligned_cols=385 Identities=16% Similarity=0.187 Sum_probs=319.3
Q ss_pred cchhhhccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCc----chhhhhhHHHHH-
Q 010533 5 PKSYYKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFD- 70 (508)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isQetfd- 70 (508)
|+-.-.-||++.|.|+|++-+ ||+|-+|| ..|.||+||+|+.......+||+++ +++++.||+|--
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 444445799999999999988 99999999 8899999999999999999999998 999999999972
Q ss_pred ---HHHHHHHhhcCCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHH--HHHHHHHHHhhcCCCCCChhhHHH
Q 010533 71 ---EVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNE 145 (508)
Q Consensus 71 ---~~v~eni~~~~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~--~~l~~L~~~l~~~~~~~~~~~~~~ 145 (508)
.+|--+|..+.-...+..+++| |.|+||..|.+++++. |+ .+++.+...+.++ ..+...
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQav-------WALGNiAGDS~~~RD~----vL~~galeplL~ll~ss-----~~~ism 217 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAV-------WALGNIAGDSEGCRDY----VLQCGALEPLLGLLLSS-----AIHISM 217 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHH-------HHhccccCCchhHHHH----HHhcCchHHHHHHHHhc-----cchHHH
Confidence 2344478888888888889999 9999999999998776 66 4788887776653 235789
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHH
Q 010533 146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVN 224 (508)
Q Consensus 146 ~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~ 224 (508)
++.+.|.|.++|...+-++.+.- -+.++|+|..|+.+ .|.+++..|+|+++++.++...+ ..+++.|..+.||+
T Consensus 218 lRn~TWtLSNlcRGknP~P~w~~--isqalpiL~KLiys---~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvE 292 (526)
T COG5064 218 LRNATWTLSNLCRGKNPPPDWSN--ISQALPILAKLIYS---RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVE 292 (526)
T ss_pred HHHhHHHHHHhhCCCCCCCchHH--HHHHHHHHHHHHhh---cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHH
Confidence 99999999999987433444333 34579999999988 48999999999999999887444 78899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchH
Q 010533 225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGY 304 (508)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~ 304 (508)
+|.+ ++..++.-+++.++++.++++...+.++..|+++.+-.+|.++.+.+.++|||+++|++.+. .++
T Consensus 293 lLs~--~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn---------teq 361 (526)
T COG5064 293 LLSH--ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN---------TEQ 361 (526)
T ss_pred HhcC--ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC---------HHH
Confidence 9974 57889999999999999999999999999999999999999877788899999999999755 467
Q ss_pred HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (508)
Q Consensus 305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~ 380 (508)
++.+.+++.+|+|+++|... +-.+.+++||+++|... .++..+.+++.|.|++|.++|.-. +. .+.+.++.
T Consensus 362 iqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dN---kiiev~LD 436 (526)
T COG5064 362 IQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DN---KIIEVALD 436 (526)
T ss_pred HHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-Cc---cchhhhHH
Confidence 88889999999999999874 44578999999999864 568889999999999999999854 22 57777888
Q ss_pred HHHHhh--C---------CchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533 381 LLSKLA--G---------SDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (508)
Q Consensus 381 aL~~La--~---------~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L 428 (508)
++.++- | +...-...+ ++||++.+-.+=. +.+..+-..|-..+-..
T Consensus 437 ~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~--s~n~~iy~KAYsIIe~f 494 (526)
T COG5064 437 AIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD--SVNRTIYDKAYSIIEKF 494 (526)
T ss_pred HHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhh--ccccHHHHHHHHHHHHH
Confidence 888863 1 111122334 4999999988877 67778888887776654
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=321.69 Aligned_cols=329 Identities=16% Similarity=0.173 Sum_probs=276.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~ 220 (508)
+.+.+.++.+.|+.+|.. +.+++..+.+.|++|.|+++|++. +..++..|+++|.+++.+. +++..++++||+|
T Consensus 417 ~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 417 TADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred CHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 578899999999999987 899999999999999999999984 6788889999999998755 4578899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhh---
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV--- 297 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~--- 297 (508)
.|+++|. +++.++++.|+|+|+|+|...++++..+.+.|++++|+++|++++...++.|+|+|++|+.+.+....
T Consensus 492 ~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L 569 (2102)
T PLN03200 492 PLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL 569 (2102)
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 9999997 45789999999999999876555565566889999999999998888999999999999754433210
Q ss_pred ------------------hh------hcchHHHHHH-hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHh
Q 010533 298 ------------------AS------QVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVA 351 (508)
Q Consensus 298 ------------------~~------~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~ 351 (508)
++ ...+.....+ ..||++.|+++|+++ ++.+++.++|+|.+++. +.+++..++
T Consensus 570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 00 0001111112 468999999999986 57799999999999987 778899999
Q ss_pred hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
..|+|++|+.+|+... .+++++++++|.+|+ ++++++..+++.|++++|+++|+ ..+..+++.++.+|.+|+
T Consensus 649 ~agaIpPLV~LLss~~----~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~--~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 649 TDEIINPCIKLLTNNT----EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK--SSSIEVAEQAVCALANLL 722 (2102)
T ss_pred HcCCHHHHHHHHhcCC----hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 9999999999998642 389999999999998 45677888999999999999998 678899999999999999
Q ss_pred cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc---cchHHHHhcc
Q 010533 430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP---ENSFCSVMVS 487 (508)
Q Consensus 430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~---e~~~~~~~~g 487 (508)
.+++.+.++.+.|+++.|+++|+.+ +.+.+++|+|||.+|+.+.| ....++...|
T Consensus 723 -~~~e~~~ei~~~~~I~~Lv~lLr~G--~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 723 -SDPEVAAEALAEDIILPLTRVLREG--TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred -cCchHHHHHHhcCcHHHHHHHHHhC--ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 4888999999999999999999864 57889999999999998766 3446666666
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-33 Score=290.45 Aligned_cols=379 Identities=16% Similarity=0.181 Sum_probs=315.5
Q ss_pred hhccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCc----chhhhhhHHHHHHHHHH
Q 010533 9 YKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKE 75 (508)
Q Consensus 9 ~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isQetfd~~v~e 75 (508)
-+-||++.+.|+.++++ ||.+++|| +.|+||.+|.||.|.+++++||+++ ++|++.|++|- .||..
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~-~vv~a 151 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK-VVVDA 151 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc-ccccC
Confidence 35689999999999999 99999999 7799999999999999999999999 89999999988 66665
Q ss_pred -----HHhhcCCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHH--HHHHHHHHHhhcCCCCCChhhHHHHHH
Q 010533 76 -----NMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMG 148 (508)
Q Consensus 76 -----ni~~~~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~--~~l~~L~~~l~~~~~~~~~~~~~~~~~ 148 (508)
.+..+.-...+..++++ |.|+||.+|++..++. |+ .++++|...+.... ....++.
T Consensus 152 gavp~fi~Ll~s~~~~v~eQav-------WALgNIagds~~~Rd~----vl~~g~l~pLl~~l~~~~------~~~~lRn 214 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAV-------WALGNIAGDSPDCRDY----VLSCGALDPLLRLLNKSD------KLSMLRN 214 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHH-------HHHhccccCChHHHHH----HHhhcchHHHHHHhcccc------chHHHHH
Confidence 56666776677779999 9999999999887665 55 58889988887651 2478899
Q ss_pred HHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChHHHHHHH
Q 010533 149 LFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNIL 226 (508)
Q Consensus 149 al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-~~~i~~~ggi~~Lv~lL 226 (508)
++|.|.++|+.+ +.|+ +-.-..++|.|..++.+ .|.+++..|+|+|++|+++.+. ...+++.|+++.||++|
T Consensus 215 ~tW~LsNlcrgk~P~P~---~~~v~~iLp~L~~ll~~---~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 215 ATWTLSNLCRGKNPSPP---FDVVAPILPALLRLLHS---TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred HHHHHHHHHcCCCCCCc---HHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 999999999974 3343 33445689999999998 4899999999999999977644 48889999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHH
Q 010533 227 IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYA 305 (508)
Q Consensus 227 ~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~ 305 (508)
.. .+..++..|+++++|++++++...+.++..|+++.|..+|.++.. ...++|||+|+|++.+. .+++
T Consensus 289 ~~--~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~---------~~qi 357 (514)
T KOG0166|consen 289 GH--SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN---------QEQI 357 (514)
T ss_pred cC--CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC---------HHHH
Confidence 74 467788899999999999999999999999999999999995444 57788999999999754 4678
Q ss_pred HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010533 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (508)
Q Consensus 306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~ 383 (508)
+.++++|.+|.|+++|+++ +-.++++++|+++|++. +++....+++.|.|+++.++|.- .| .+++..++.+|.
T Consensus 358 qaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D---~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 358 QAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD---VKIILVALDGLE 432 (514)
T ss_pred HHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC---hHHHHHHHHHHH
Confidence 8899999999999999986 56789999999999986 67778899999999999999953 33 378999999999
Q ss_pred Hhh--C----C---chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 384 KLA--G----S---DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 384 ~La--~----~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+|- + . ......|-++||++.+=. |+. +.+..+-+.|...+-.-=
T Consensus 433 nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~-LQ~-hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 433 NILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN-LQS-HENEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHHHHHHhccccccHHHHHHHHccChhHHHH-hhc-cccHHHHHHHHHHHHHhc
Confidence 873 1 1 233455678899988754 444 456788888888777653
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.98 E-value=8.5e-30 Score=298.36 Aligned_cols=348 Identities=15% Similarity=0.123 Sum_probs=277.3
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
+++..|...+.+. ...|.--...++..|+++|.. ....+..++++|+||.|+.+|++ +++.++..|+++|.
T Consensus 144 GaVp~Lv~lL~~g----sk~d~~L~~~Av~AL~nLs~~--~en~~~~IIeaGaVp~LV~LLsS---~d~~lQ~eAa~aLa 214 (2102)
T PLN03200 144 GVVPSLWDQLQPG----NKQDKVVEGLLTGALRNLCGS--TDGFWSATLEAGGVDILVKLLSS---GNSDAQANAASLLA 214 (2102)
T ss_pred CChHHHHHHHhCC----chhhHHHHHHHHHHHHHHhcC--ccchHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 3566676666653 011222234567899999986 55566778999999999999987 47889999999998
Q ss_pred HhhcC-CcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----
Q 010533 202 LLVHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----- 275 (508)
Q Consensus 202 ~l~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----- 275 (508)
.++.. .+.+..+++.|++|.|+++|+++ ++..+++.|+|+|.++|++++++|+.+++.|+|+.|++++.++..
T Consensus 215 ~Lass~ee~~~aVIeaGaVP~LV~LL~sg-~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~ 293 (2102)
T PLN03200 215 RLMMAFESSISKVLDAGAVKQLLKLLGQG-NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQG 293 (2102)
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHccC-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhcc
Confidence 88754 35688999999999999999753 467999999999999999999999999999999999999986442
Q ss_pred ----HHHHHHHHHHHHhcCCCcc------------h--h---h-----------hhhcchHHHHHHhcCCHHHHHHHHhc
Q 010533 276 ----DSIQSLYDAIRVLLTPDDD------------Q--V---V-----------ASQVYGYARRFAKIGIARALVHSLHA 323 (508)
Q Consensus 276 ----~~~~~A~~aL~~L~~~dd~------------r--~---~-----------~~~a~~~~~~i~~~g~i~~Lv~lL~~ 323 (508)
..+++|.|+|.|||.+-.. | . . +....+..+.+-...+.+.|+++++.
T Consensus 294 ~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~ 373 (2102)
T PLN03200 294 EFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKP 373 (2102)
T ss_pred ccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCC
Confidence 4588999999999975211 0 0 0 00111111211123455889999886
Q ss_pred CCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHH
Q 010533 324 GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMD 402 (508)
Q Consensus 324 ~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~ 402 (508)
.....+++.+..+|+.|..|..+++.+.+.|++++|+.++.... .++++.++++|++|+ ++++.++.|++.||+|
T Consensus 374 k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~----~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp 449 (2102)
T PLN03200 374 RDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT----ADVQEELIRALSSLCCGKGGLWEALGGREGVQ 449 (2102)
T ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC----HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHH
Confidence 53333468888999999999999999999999999999998642 389999999999999 4678999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533 403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC 482 (508)
Q Consensus 403 ~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~ 482 (508)
.|+++|. ++++.+|+.|+++|.+|+.++++++..|+++|++|.|+++|.. ++..+|++|+|+|.|++.++++.+..
T Consensus 450 ~LV~LL~--s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 450 LLISLLG--LSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 9999998 5678999999999999999999999999999999999999963 46799999999999999865555544
Q ss_pred HHhcc
Q 010533 483 SVMVS 487 (508)
Q Consensus 483 ~~~~g 487 (508)
+.+.|
T Consensus 526 V~~aG 530 (2102)
T PLN03200 526 VESAG 530 (2102)
T ss_pred HHHCC
Confidence 54656
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=227.76 Aligned_cols=330 Identities=15% Similarity=0.130 Sum_probs=277.2
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
.+++....+++. |...++.+-.++.+++- +.+++..+++.+++..|+.-+-+ +.-++++.+.+.+.+
T Consensus 86 s~epvl~llqs~-------d~~Iq~aa~~alGnlAV---n~enk~liv~l~Gl~~Li~qmmt---d~vevqcnaVgCitn 152 (550)
T KOG4224|consen 86 SNEPVLALLQSC-------DKCIQCAAGEALGNLAV---NMENKGLIVSLLGLDLLILQMMT---DGVEVQCNAVGCITN 152 (550)
T ss_pred hhhHHHHHHhCc-------chhhhhhhhhhhcccee---ccCCceEEEeccChHHHHHHhcC---CCcEEEeeehhhhhh
Confidence 445555555554 77778888888888887 57788889998888887765544 245788888888888
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY 282 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~ 282 (508)
|..-..+|..+...||+.++.++-+ +.+..++..+..+|.++ +...+||+.++.+|++|.|++++++++..++..+|
T Consensus 153 LaT~d~nk~kiA~sGaL~pltrLak--skdirvqrnatgaLlnm-Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyyct 229 (550)
T KOG4224|consen 153 LATFDSNKVKIARSGALEPLTRLAK--SKDIRVQRNATGALLNM-THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCT 229 (550)
T ss_pred hhccccchhhhhhccchhhhHhhcc--cchhhHHHHHHHHHHHh-hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHH
Confidence 8776677899999999999999543 56889999999999998 56788999999999999999999998889999999
Q ss_pred HHHHHhcCCCcchhhhhhcchHHHHHHhcC--CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533 283 DAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (508)
Q Consensus 283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g--~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv 360 (508)
-++.++..+.- +.|.+++.+ .++.|++++.+++ +.++..+..+|++|+.+.++...|+++|++|.++
T Consensus 230 taisnIaVd~~----------~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv 298 (550)
T KOG4224|consen 230 TAISNIAVDRR----------ARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLASDTEYQREIVEAGSLPLLV 298 (550)
T ss_pred HHhhhhhhhHH----------HHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhcccchhhhHHHhcCCchHHH
Confidence 99999987542 345667777 9999999999874 5588889999999999999999999999999999
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533 361 RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM 440 (508)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~ 440 (508)
++|++. .. .+..+.+.+++|++-++-|..-|+++|.+.+||++|. +.+++.+|-+|..+|++|+..+..|...|.
T Consensus 299 ~Llqs~--~~--plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~-~~dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 299 ELLQSP--MG--PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLR-AGDNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred HHHhCc--ch--hHHHHHHHHHhhcccccCcccceecccchhHHHHHHh-cCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 999764 33 6777889999999999999999999999999999997 467788999999999999987889999999
Q ss_pred hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
+.|+++.+.+++...| -.+|.+-..++.-|+. +.+.+.+|++.|
T Consensus 374 esgAi~kl~eL~lD~p--vsvqseisac~a~Lal-~d~~k~~lld~g 417 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDGP--VSVQSEISACIAQLAL-NDNDKEALLDSG 417 (550)
T ss_pred hcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHh-ccccHHHHhhcC
Confidence 9999999999998765 4567665555555554 677888999888
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.3e-26 Score=221.79 Aligned_cols=331 Identities=19% Similarity=0.211 Sum_probs=276.7
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
++++.+.. +.+. .|...+..++..|.++.. +.++|..++.+|++|.||++++++ |.+++..|.++++
T Consensus 167 GaL~pltr-Laks------kdirvqrnatgaLlnmTh---s~EnRr~LV~aG~lpvLVsll~s~---d~dvqyycttais 233 (550)
T KOG4224|consen 167 GALEPLTR-LAKS------KDIRVQRNATGALLNMTH---SRENRRVLVHAGGLPVLVSLLKSG---DLDVQYYCTTAIS 233 (550)
T ss_pred cchhhhHh-hccc------chhhHHHHHHHHHHHhhh---hhhhhhhhhccCCchhhhhhhccC---ChhHHHHHHHHhh
Confidence 36666666 3332 277788899999999987 799999999999999999999994 8899999999999
Q ss_pred HhhcCCcchhHHHhcC--ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHH
Q 010533 202 LLVHDVQSTETFRTGG--GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (508)
Q Consensus 202 ~l~~~~~~~~~i~~~g--gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~ 279 (508)
.+.-+...|..+.+.+ .++.||.+++. ++++++.+|..+|++++++ +++...|+++|++|.++++|+++....+.
T Consensus 234 nIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plil 310 (550)
T KOG4224|consen 234 NIAVDRRARKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLIL 310 (550)
T ss_pred hhhhhHHHHHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHH
Confidence 9988777788888887 89999999985 5789999999999999765 45677889999999999999886555555
Q ss_pred HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHH
Q 010533 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDA 358 (508)
Q Consensus 280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~ 358 (508)
+....++|++...-+. -.|++.|.+.|||.+|+.+.+.+++..+..+|++||. .+.++..|.++|+|+.
T Consensus 311 asVaCIrnisihplNe----------~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k 380 (550)
T KOG4224|consen 311 ASVACIRNISIHPLNE----------VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK 380 (550)
T ss_pred HHHHHHhhcccccCcc----------cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence 5555699998765443 3577999999999999988777899999999999999 6778899999999999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533 359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (508)
Q Consensus 359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~ 438 (508)
+..++.+.+- +++.+.-.+++.|+.++..|..+.+.|.+|.|+..+. +.+.+++.+++.+|.|++. +.++...
T Consensus 381 l~eL~lD~pv----svqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~--s~s~Ev~gNaAaAL~Nlss-~v~~Yar 453 (550)
T KOG4224|consen 381 LIELLLDGPV----SVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG--SESEEVRGNAAAALINLSS-DVEHYAR 453 (550)
T ss_pred HHHHHhcCCh----hHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC--ccchhhcccHHHHHHhhhh-hhHHHHH
Confidence 9999988643 7999999999999999999999999999999999998 7789999999999999995 7777777
Q ss_pred HHhc------CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 439 AMEA------GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 439 i~~~------G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
++++ |.-..|++.++.| ...+..-+.|-|-.|...+..-...|+...
T Consensus 454 viEawd~P~~gi~g~L~Rfl~S~--~~tf~hia~wTI~qLle~h~~~~~~~i~~~ 506 (550)
T KOG4224|consen 454 VIEAWDHPVQGIQGRLARFLASH--ELTFRHIARWTIQQLLEDHDLPLTAFIQSS 506 (550)
T ss_pred HHHHhcCcchhHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHhCCccHHHHHhCc
Confidence 7774 4456888888766 356677799999998864444445555543
No 10
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=9.7e-24 Score=205.26 Aligned_cols=320 Identities=16% Similarity=0.119 Sum_probs=267.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~ 220 (508)
+...+.++|..|..+..+ -| .+.++.+...++.+|.... .+.++.+..+..+...+-.+ .+|+.|++.+..+
T Consensus 120 ~~~~l~ksL~al~~lt~~--qp----dl~da~g~~vvv~lL~~~~-~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 120 NESVLKKSLEAINSLTHK--QP----DLFDAEAMAVVLKLLALKV-ESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred chhHHHHHHHHHHHhhcC--Cc----chhccccHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 788889999999988875 44 3556788999999996542 56788888888886655443 5689999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh---------hhHHHHHHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcC
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNE---------VVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLT 290 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e---------~nr~~i~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~ 290 (508)
.+...|.++... .+....+|+++.+...++ ..-..|.+.|++..|+++|..+- +.++..+|.+|..|+.
T Consensus 193 Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 193 LILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999998876444 777888999998865543 23457788899999999999874 4788899999999997
Q ss_pred CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC
Q 010533 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG 367 (508)
Q Consensus 291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~ 367 (508)
.| |.++.|++.||+..|+.+|.+..+ +++...+|.+|+.||.+++++..|++.||.+.++.++..|.
T Consensus 272 r~----------E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~ 341 (461)
T KOG4199|consen 272 RD----------EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS 341 (461)
T ss_pred HH----------HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC
Confidence 66 457889999999999999998542 45778899999999999999999999999999999999887
Q ss_pred CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 010533 368 LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD 446 (508)
Q Consensus 368 ~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~ 446 (508)
++ +-|..+++.++.-|+- .|++...+++.|+-...+++|++|+....+|++||++++||+.|+.+++..++..|+-.
T Consensus 342 ~~--p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~ 419 (461)
T KOG4199|consen 342 DD--PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK 419 (461)
T ss_pred CC--hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence 64 4899999999999985 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 447 LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 447 ~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
+|..++..|++. ...|-.|||.|.-+ .+++..+.-
T Consensus 420 Li~~A~~~h~tc---e~~akaALRDLGc~-v~lre~wtg 454 (461)
T KOG4199|consen 420 LIRTAKANHETC---EAAAKAALRDLGCD-VYLREEWTG 454 (461)
T ss_pred HHHHHHhcCccH---HHHHHHHHHhcCcc-hhhHHHhcc
Confidence 999999888654 44566688988653 456655543
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.87 E-value=4.1e-19 Score=194.39 Aligned_cols=319 Identities=14% Similarity=0.163 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHH
Q 010533 146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI 225 (508)
Q Consensus 146 ~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~l 225 (508)
++-++.-|-+++. ++.....+.+.|.|+.|+++|++. +.+++..+++.|..|+-..+++..+.+.|.++.|+++
T Consensus 266 lrv~~~lLlNLAe---d~~ve~kM~~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 266 LRVAFYLLLNLAE---DPRVELKMVNKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHhc---ChHHHHHHHhcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 3455666777776 678888899999999999999874 6789999999999988777789999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHH
Q 010533 226 LIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA 305 (508)
Q Consensus 226 L~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~ 305 (508)
|.+ ++.+++..++++|.|+ +.++.+|..+++.|++|.|+.+|..++ ....+...|.+||.+|+.|.
T Consensus 340 l~s--~~~~l~~~aLrlL~NL-Sfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~--------- 405 (708)
T PF05804_consen 340 LPS--ENEDLVNVALRLLFNL-SFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS--------- 405 (708)
T ss_pred hcC--CCHHHHHHHHHHHHHh-CcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH---------
Confidence 974 5789999999999999 567789999999999999999998643 44557888999999886553
Q ss_pred HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH------------HHh---ccC---
Q 010533 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR------------CID---DSG--- 367 (508)
Q Consensus 306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~------------lL~---~~~--- 367 (508)
.+...+++|.|+++|-.++++.+..++.+++.||+.+..+++.+.+.||++.|++ +++ .|.
T Consensus 406 -~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 406 -MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPL 484 (708)
T ss_pred -HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchH
Confidence 4557789999999988877666667788889999999999999999999886653 221 121
Q ss_pred ----------------CCCcHHHHHHHHHHHHHhhCCchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 368 ----------------LQGNKTVARICCSLLSKLAGSDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 368 ----------------~~~~~~v~~~al~aL~~La~~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
...+.+..-+++++|+||+..+.....++ +.+.+|.|...|..+...+.++-+++..+..+|
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla- 563 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA- 563 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH-
Confidence 00135788899999999987665555555 568899999999876667789999999999999
Q ss_pred CChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 431 RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 431 ~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
.+++.+..+.+.|.++.++++|+....+.+..-+.+++...+..+ ++.|..++.+.
T Consensus 564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~ 619 (708)
T PF05804_consen 564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKET 619 (708)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhcc
Confidence 489999999999999999999998877888888999999999875 77888887754
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.83 E-value=1.2e-17 Score=182.82 Aligned_cols=329 Identities=12% Similarity=0.092 Sum_probs=264.3
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
.+..|...+.+. +.+.+.-++..|.+++- ..+|+..+.+.|+||.|++++.+ ++.+++..++..|.+
T Consensus 291 iV~~Lv~~Ldr~-------n~ellil~v~fLkkLSi---~~ENK~~m~~~giV~kL~kLl~s---~~~~l~~~aLrlL~N 357 (708)
T PF05804_consen 291 IVSLLVKCLDRE-------NEELLILAVTFLKKLSI---FKENKDEMAESGIVEKLLKLLPS---ENEDLVNVALRLLFN 357 (708)
T ss_pred CHHHHHHHHcCC-------CHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence 566677777665 77888889999999987 68899999999999999999988 467888899999999
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHH
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSL 281 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A 281 (508)
|+.+.+.|..++..|.+|.|+.+|.. +..+..++.+|.+++ .++.+|..|...++++.|+++|-++++ .+..++
T Consensus 358 LSfd~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS-~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~el 432 (708)
T PF05804_consen 358 LSFDPELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLS-MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLEL 432 (708)
T ss_pred hCcCHHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhc-cCHhhHHHHhhcchHHHHHHHHHhCCCccccHHH
Confidence 99988889999999999999999963 345567889999995 567899999999999999998877544 455567
Q ss_pred HHHHHHhcCCCcchhhhhhcchHHHHHHhcC-------------------------------------CHHHHHHHHhcC
Q 010533 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIG-------------------------------------IARALVHSLHAG 324 (508)
Q Consensus 282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g-------------------------------------~i~~Lv~lL~~~ 324 (508)
.+++.||+.+..+ ++.|.+.| .|..|+.++..+
T Consensus 433 iaL~iNLa~~~rn----------aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~ 502 (708)
T PF05804_consen 433 IALLINLALNKRN----------AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG 502 (708)
T ss_pred HHHHHHHhcCHHH----------HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC
Confidence 7888888876532 33333333 344555555554
Q ss_pred CChhHHHHHHHHHHHhhcChhh-HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHH
Q 010533 325 LSSPSLISASIALKAVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDK 403 (508)
Q Consensus 325 ~d~~~~~~a~~aL~~La~~~e~-~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~ 403 (508)
.+.+.+.++.++|+||...+.. .+.+-+.+-+|.|.++|..+... .+++-+++-.++.+|..+.....+++.|.++.
T Consensus 503 ~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~--dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~ 580 (708)
T PF05804_consen 503 DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASE--DDLLLEVVILLGTLASDPECAPLLAKSGLIPT 580 (708)
T ss_pred CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHhCChHHH
Confidence 4566778888999999986544 44444678899999999865443 38999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC 482 (508)
Q Consensus 404 Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~-~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~ 482 (508)
|+++|+.+..+....-+.+.++..+.. +++.+..++. .+++..++.+| |..++.+++.|-.+|--++..+++-...
T Consensus 581 Li~LL~~kqeDdE~VlQil~~f~~ll~-h~~tr~~ll~~~~~~~ylidL~--~d~N~~ir~~~d~~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 581 LIELLNAKQEDDEIVLQILYVFYQLLF-HEETREVLLKETEIPAYLIDLM--HDKNAEIRKVCDNALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHc-ChHHHHHHHhccchHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999888889999999999999985 6777777765 67888999999 6678999988888888887777665544
Q ss_pred HH
Q 010533 483 SV 484 (508)
Q Consensus 483 ~~ 484 (508)
+-
T Consensus 658 i~ 659 (708)
T PF05804_consen 658 IR 659 (708)
T ss_pred hh
Confidence 43
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.73 E-value=3.4e-15 Score=160.61 Aligned_cols=338 Identities=14% Similarity=0.115 Sum_probs=256.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC---cchhHHHhcCC
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV---QSTETFRTGGG 218 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~---~~~~~i~~~gg 218 (508)
+...+..|...|.-+|.. +..-+..+.+.|+||.||.+|.+ ...+++..|+++|-+|.-+. .++-.+.+.+|
T Consensus 246 ~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~---~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~G 320 (717)
T KOG1048|consen 246 DPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDH---RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNG 320 (717)
T ss_pred ChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcC---CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCC
Confidence 677788899999999998 88889999999999999999998 47899999999999987443 35688899999
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHH------------------------------------------------------HHH
Q 010533 219 PKLLVNILIDGNEDPEILNSGFA------------------------------------------------------VVA 244 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~------------------------------------------------------~L~ 244 (508)
|+.++++|+.. .|.++.+.... +|+
T Consensus 321 v~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLR 399 (717)
T KOG1048|consen 321 VPTLVRLLRHT-QDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLR 399 (717)
T ss_pred hHHHHHHHHhh-cchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhc
Confidence 99999999852 34555554444 455
Q ss_pred HhhcCChhhHHHHHHc-CcHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCcchhhh-------------------
Q 010533 245 ASATGNEVVKESYMEL-KIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVVA------------------- 298 (508)
Q Consensus 245 ~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~------~~~~~~~A~~aL~~L~~~dd~r~~~------------------- 298 (508)
|+.+..++.|+.+.+. |.|..|+..+++. ++..++++.-.|+||+..=+--++.
T Consensus 400 NlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~ 479 (717)
T KOG1048|consen 400 NLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA 479 (717)
T ss_pred cccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc
Confidence 5555556677888765 8899999988841 2367788878999998432100100
Q ss_pred --hhcc-hHHHH----------------------HHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-----hhHh
Q 010533 299 --SQVY-GYARR----------------------FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-----EICK 348 (508)
Q Consensus 299 --~~a~-~~~~~----------------------i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-----e~~~ 348 (508)
.+.+ ...+. +...-+|.+-..+|....+..+++.++++|-||+... ..+.
T Consensus 480 ~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~ 559 (717)
T KOG1048|consen 480 ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRG 559 (717)
T ss_pred cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHh
Confidence 0000 01111 1111235555666775556788999999999998732 3455
Q ss_pred HH-hhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC----CHHHHHHHHH
Q 010533 349 SV-AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMS 423 (508)
Q Consensus 349 ~i-~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~a~~ 423 (508)
.| ...-|+++|+++|+... ..|++.++.+|+||+.+..||..|. .++++-|++.|..+.. +.+....+|.
T Consensus 560 ~v~~kekgl~~l~~ll~~~~----~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~ 634 (717)
T KOG1048|consen 560 AVFRKEKGLPPLVELLRNDD----SDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCH 634 (717)
T ss_pred hhhhhccCccHHHHHHhcCC----chHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHH
Confidence 55 67889999999999742 2899999999999999999999887 6899999999975443 3578889999
Q ss_pred HHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccccccH
Q 010533 424 IITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSD 492 (508)
Q Consensus 424 aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~ 492 (508)
+|.++...+++|++.+.+.+|++.|+-+.+. ..++++-+.|+..|..|=. ..|.+..+-..|..-.+
T Consensus 635 tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s-~~S~k~~kaAs~vL~~lW~-y~eLh~~~kk~g~~q~~ 701 (717)
T KOG1048|consen 635 TLNNIVRKNVLNAKDLLEIKGIPKLRLISKS-QHSPKEFKAASSVLDVLWQ-YKELHFKLKKKGFKQQD 701 (717)
T ss_pred hHHHHHHHhHHHHHHHHhccChHHHHHHhcc-cCCHHHHHHHHHHHHHHHH-HHHHhhhHhhhhhHHHH
Confidence 9999998999999999999999999988876 5678888999999999855 46777777777754333
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4e-16 Score=173.45 Aligned_cols=314 Identities=14% Similarity=0.171 Sum_probs=242.4
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-----------------
Q 010533 147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS----------------- 209 (508)
Q Consensus 147 ~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~----------------- 209 (508)
.+-.+.|.++.. +++--......|.+|.|+.+|.-.+..+.+....|-.+|.++...+.+
T Consensus 212 ee~ar~fLemSs---s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQI 288 (2195)
T KOG2122|consen 212 EEMARTFLEMSS---SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQI 288 (2195)
T ss_pred HHHHHHHHHhcc---CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHH
Confidence 344556667766 566777888999999999999876655667777777777776654321
Q ss_pred -------------------------------------------hhHHHhcCChHHHHHHHhcC----C------CCHHHH
Q 010533 210 -------------------------------------------TETFRTGGGPKLLVNILIDG----N------EDPEIL 236 (508)
Q Consensus 210 -------------------------------------------~~~i~~~ggi~~Lv~lL~~~----~------~~~~v~ 236 (508)
|...-+-||++.+-+||.-. . ..-.+.
T Consensus 289 raYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLR 368 (2195)
T KOG2122|consen 289 RAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALR 368 (2195)
T ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 11122346666666655311 0 123477
Q ss_pred HHHHHHHHHhhcCChhhHHHHH-HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCH
Q 010533 237 NSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIA 314 (508)
Q Consensus 237 ~~a~~~L~~l~~~~e~nr~~i~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i 314 (508)
..+..+|.|+.-++..||..+. ..|.+..+|..|.+..+++++-.+.+|+||+=.-|. |.+.+. +.|-+
T Consensus 369 rYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~---------nmKkvLrE~GsV 439 (2195)
T KOG2122|consen 369 RYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS---------NMKKVLRETGSV 439 (2195)
T ss_pred HHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc---------cHHHHHHhhhhH
Confidence 8888999999888888998877 559999999999998878888889999999954442 234444 77989
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhh-cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CC
Q 010533 315 RALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GS 388 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e-~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~~ 388 (508)
..|+.+.-.......+..+..|||||+. ..+|+..|.. .|++..|+.+|.-.....--.|++.+-++|+|.+ .+
T Consensus 440 taLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 440 TALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 9888875443345678999999999998 6789988886 5789999999974311212478899999999965 57
Q ss_pred chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a 468 (508)
.+.++.+.+..++..|++.|+.| +-.|.-++|++|+||..|+|+-++.+.+.|+++.|..++ |+++.-+-+-++.|
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLI--hSKhkMIa~GSaaA 595 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLI--HSKHKMIAMGSAAA 595 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHH--hhhhhhhhhhHHHH
Confidence 78899999999999999999944 578999999999999999999999999999999999998 66777888889999
Q ss_pred HHHhhhcC
Q 010533 469 IRNLVARN 476 (508)
Q Consensus 469 L~nL~~~~ 476 (508)
|+||...-
T Consensus 596 LrNLln~R 603 (2195)
T KOG2122|consen 596 LRNLLNFR 603 (2195)
T ss_pred HHHHhcCC
Confidence 99998643
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.61 E-value=1.5e-13 Score=148.12 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=226.9
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh-
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV- 252 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~- 252 (508)
+|-.+..|.+. +..++.+|..-+..++-++ +-+..+.+-|||+.||.+|+ +...+|+..+|++|+|+.-+...
T Consensus 235 lpe~i~mL~~q---~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 235 LPEVISMLMSQ---DPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cHHHHHHHhcc---ChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcccCCc
Confidence 67778888773 6778888777777777544 45678889999999999998 46899999999999999877666
Q ss_pred -hHHHHHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCcchhh----------------hh---------------
Q 010533 253 -VKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVV----------------AS--------------- 299 (508)
Q Consensus 253 -nr~~i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~----------------~~--------------- 299 (508)
||-.|.+.++|+.++++|+.. +.++.++...+|.||+..|..+.. ++
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 999999999999999999974 558888999999999987644321 11
Q ss_pred -------------h-cchHHHHHHh-cCCHHHHHHHHhcC-----CChhHHHHHHHHHHHhhcChh------hHh-----
Q 010533 300 -------------Q-VYGYARRFAK-IGIARALVHSLHAG-----LSSPSLISASIALKAVAVNDE------ICK----- 348 (508)
Q Consensus 300 -------------~-a~~~~~~i~~-~g~i~~Lv~lL~~~-----~d~~~~~~a~~aL~~La~~~e------~~~----- 348 (508)
. ..+--+++-+ .|.|+.|+..++.. .|...++++...|.||+-.-+ ..+
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 1 2234455554 48999999998842 144456777777888864221 000
Q ss_pred ---------------------H--------------HhhcC--------CHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 349 ---------------------S--------------VAENG--------GIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 349 ---------------------~--------------i~e~G--------gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
+ ....| .|.+=+.+|.... +..+++.+.++|.||
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~---n~~TlEasaGaLQNl 546 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSK---NDNTLEASAGALQNL 546 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhc---chHHHHHhhhhHhhh
Confidence 0 00001 1233244555322 348999999999999
Q ss_pred h-CC----chhHHHH-HhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC--
Q 010533 386 A-GS----DSNKSAI-IENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN-- 457 (508)
Q Consensus 386 a-~~----~~~k~~I-v~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~-- 457 (508)
+ +. ...+..| .+..|+|+|+++|+ .++..|.+.++++|.||+ +++.|+..|. .++++-|++.|..+..
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~--~~~~~vv~s~a~~LrNls-~d~rnk~lig-k~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLR--NDDSDVVRSAAGALRNLS-RDIRNKELIG-KYAIPDLVRCLPGSGPST 622 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHh--cCCchHHHHHHHHHhhhc-cCchhhhhhh-cchHHHHHHhCcCCCCCc
Confidence 6 32 2345555 77889999999999 889999999999999999 5898888877 8899999999965533
Q ss_pred --cHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533 458 --AQQLQRSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 458 --~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
+.++...+|-.|.|++..|+++.+.+++.++
T Consensus 623 ~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g 655 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG 655 (717)
T ss_pred CchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC
Confidence 2567788999999999889999999998875
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.60 E-value=6.9e-13 Score=133.59 Aligned_cols=341 Identities=15% Similarity=0.195 Sum_probs=237.3
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccC----CCHHHHHHH
Q 010533 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSC 196 (508)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~----~~~~~~~~a 196 (508)
.++++.|++...|. |.+...+..+.|.+.|.. +.++|..+.+.|+-.+++++|+.... ...+...-+
T Consensus 86 a~~le~Lrq~psS~-------d~ev~~Q~~RaLgNiCyd--n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~ 156 (604)
T KOG4500|consen 86 AEALELLRQTPSSP-------DTEVHEQCFRALGNICYD--NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVA 156 (604)
T ss_pred HHHHHHHHhCCCCC-------cccHHHHHHHHHhhhhcc--CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHH
Confidence 35677777776664 788888999999999997 99999999999998888888765422 234666666
Q ss_pred HHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHH--------------------------------------
Q 010533 197 LKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILN-------------------------------------- 237 (508)
Q Consensus 197 l~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~-------------------------------------- 237 (508)
...|.+-..+. +-+..+.+.|.++.|+.++.-+..+.+..+
T Consensus 157 ~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v 236 (604)
T KOG4500|consen 157 FGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV 236 (604)
T ss_pred HHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh
Confidence 77777766554 335677788888888777655444333222
Q ss_pred ------HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--------HHHHHHHHHHHHhcCCCcchhhhhhcch
Q 010533 238 ------SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------DSIQSLYDAIRVLLTPDDDQVVASQVYG 303 (508)
Q Consensus 238 ------~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--------~~~~~A~~aL~~L~~~dd~r~~~~~a~~ 303 (508)
-.+.++... ..++..|-.+.+.|.+..++++++...+ .....+|....-|..+|+.
T Consensus 237 ~~d~~eM~feila~~-aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS--------- 306 (604)
T KOG4500|consen 237 REDIDEMIFEILAKA-AENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES--------- 306 (604)
T ss_pred ccchhhHHHHHHHHH-hcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH---------
Confidence 222333333 2455566677888999999999987321 3344567777777777753
Q ss_pred HHHHHHhcC-CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc-cCCCCcHHHHHHHHHH
Q 010533 304 YARRFAKIG-IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSL 381 (508)
Q Consensus 304 ~~~~i~~~g-~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~-~~~~~~~~v~~~al~a 381 (508)
.+.+.+.+ .++-++.-+++ .|.+.+.....+++|++.++++|..+++.|-+..|+++|.. +...+|..++.++|++
T Consensus 307 -Mq~L~~~p~~l~~~~sw~~S-~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsA 384 (604)
T KOG4500|consen 307 -MQKLHADPQFLDFLESWFRS-DDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSA 384 (604)
T ss_pred -HHHHhcCcHHHHHHHHHhcC-CchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 23444433 56667666665 36778888999999999999999999999999999999875 5556678999999999
Q ss_pred HHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC---CCc
Q 010533 382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF---PNA 458 (508)
Q Consensus 382 L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h---~~~ 458 (508)
|+||+-.-.||..++.+|..+.++..++ ...|.++..-.++|+.+-...+...-++. --+.+++-|..+ ++.
T Consensus 385 LRnl~IPv~nka~~~~aGvteaIL~~lk--~~~ppv~fkllgTlrM~~d~qe~~a~eL~---kn~~l~ekLv~Wsks~D~ 459 (604)
T KOG4500|consen 385 LRNLMIPVSNKAHFAPAGVTEAILLQLK--LASPPVTFKLLGTLRMIRDSQEYIACELA---KNPELFEKLVDWSKSPDF 459 (604)
T ss_pred HHhccccCCchhhccccchHHHHHHHHH--hcCCcchHHHHHHHHHHHhchHHHHHHHh---cCHHHHHHHHHhhhCCcc
Confidence 9999999999999999999999999999 55688889999999988754443333332 223333333222 333
Q ss_pred HHHHHHHHHHHHHhhhc--CccchHHHHhcc
Q 010533 459 QQLQRSSCFMIRNLVAR--NPENSFCSVMVS 487 (508)
Q Consensus 459 ~~vq~~A~~aL~nL~~~--~~e~~~~~~~~g 487 (508)
++|--+.-+.+.-+..+ ..+....+...|
T Consensus 460 aGv~gESnRll~~lIkHs~~kdv~~tvpksg 490 (604)
T KOG4500|consen 460 AGVAGESNRLLLGLIKHSKYKDVILTVPKSG 490 (604)
T ss_pred chhhhhhhHHHHHHHHhhHhhhhHhhccccc
Confidence 34444444444444333 344555555555
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.53 E-value=1.5e-12 Score=131.24 Aligned_cols=309 Identities=14% Similarity=0.106 Sum_probs=221.4
Q ss_pred hhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCC-----CCHHHHH
Q 010533 164 VNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGN-----EDPEILN 237 (508)
Q Consensus 164 ~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~-----~~~~v~~ 237 (508)
.++..-+.+|++..|.+..++ +|.++..++..+|.+++-++ ++|..|.+.||-+.++++|+.+. .+.+...
T Consensus 78 ~F~~~~I~a~~le~Lrq~psS---~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~ 154 (604)
T KOG4500|consen 78 LFRNYCIDAEALELLRQTPSS---PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSA 154 (604)
T ss_pred HHHHHhhHHHHHHHHHhCCCC---CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHH
Confidence 344444556777777777666 47888888899999888654 78999999999999999998653 3456778
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHH-HHHHHHHhcCCCcchhhhhhcchHHHHH-HhcCCH
Q 010533 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRF-AKIGIA 314 (508)
Q Consensus 238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~-A~~aL~~L~~~dd~r~~~~~a~~~~~~i-~~~g~i 314 (508)
.++.+|.|...+++..+...++.|+++.|..++--+-. ..+.+ .....++|..- ..++...+ .+....
T Consensus 155 v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~---------~~e~~~~~~~d~sl~ 225 (604)
T KOG4500|consen 155 VAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF---------VCEMLYPFCKDCSLV 225 (604)
T ss_pred HHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH---------HHHhhhhhhccchHH
Confidence 88899999888999999999999999999988865422 12211 11122222200 00111112 244567
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCc----HHHHHHHHHHHHHhhCCch
Q 010533 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGN----KTVARICCSLLSKLAGSDS 390 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~----~~v~~~al~aL~~La~~~~ 390 (508)
..+++++.+...++..+-....|...+.+++.|-.+++.|-+..++++++...+..+ -.+.+.++....-|...|+
T Consensus 226 ~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe 305 (604)
T KOG4500|consen 226 FMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE 305 (604)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence 778888887655555555556678889999999999999999999999986333221 2333455555555555555
Q ss_pred hHHHHHhCC-cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc-C--CCcHHHHHHHH
Q 010533 391 NKSAIIENG-GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK-F--PNAQQLQRSSC 466 (508)
Q Consensus 391 ~k~~Iv~~G-gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~-h--~~~~~vq~~A~ 466 (508)
--+.+-..+ .+..+++.+. +++...+-.+..+|.|++ |+++++..+++.|.+.-|++++.+ | .++..+|..+|
T Consensus 306 SMq~L~~~p~~l~~~~sw~~--S~d~~l~t~g~LaigNfa-R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~l 382 (604)
T KOG4500|consen 306 SMQKLHADPQFLDFLESWFR--SDDSNLITMGSLAIGNFA-RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACL 382 (604)
T ss_pred HHHHHhcCcHHHHHHHHHhc--CCchhHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHH
Confidence 555565555 5788888887 788899999999999999 688999999999999999998755 3 23456777899
Q ss_pred HHHHHhhhcCccchHHHHhccc
Q 010533 467 FMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 467 ~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
.||||++-- ..++..|+.+|-
T Consensus 383 sALRnl~IP-v~nka~~~~aGv 403 (604)
T KOG4500|consen 383 SALRNLMIP-VSNKAHFAPAGV 403 (604)
T ss_pred HHHHhcccc-CCchhhccccch
Confidence 999999863 446777777763
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.44 E-value=5.8e-12 Score=141.02 Aligned_cols=225 Identities=18% Similarity=0.161 Sum_probs=179.0
Q ss_pred cCChhhHHHHHHcCcHHHHHHHHhcC----C----h----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCH
Q 010533 248 TGNEVVKESYMELKIDELILEILSRQ----R----N----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIA 314 (508)
Q Consensus 248 ~~~e~nr~~i~~~G~i~~Lv~lL~~~----~----~----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i 314 (508)
+.+|+.|...-+.|++..|-++|... . + .+.+.|..+|.||+++|.. +...+. .-|.+
T Consensus 326 SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~---------NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 326 SFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVA---------NKATLCSQRGFM 396 (2195)
T ss_pred hccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc---------chhhhhhhhhHH
Confidence 46788999999999999998888641 1 1 5677899999999998853 223333 56999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhh-HhHHhhcCCHHHHHHH-HhccCCCCcHHHHHHHHHHHHHhhC-Cch
Q 010533 315 RALVHSLHAGLSSPSLISASIALKAVAVN-DEI-CKSVAENGGIDALLRC-IDDSGLQGNKTVARICCSLLSKLAG-SDS 390 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~-~~~i~e~Ggi~~Lv~l-L~~~~~~~~~~v~~~al~aL~~La~-~~~ 390 (508)
+.||..|.+.+ .+++.-.+..|+||+.+ |.+ ++.+-+.|-|..|..+ |....+ ..++..+.+||||+. +.+
T Consensus 397 eavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE----sTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 397 EAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE----STLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred HHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc----chHHHHHHHHhhhhhcccc
Confidence 99999998753 46778888999999984 334 5566788999988877 444322 578999999999986 569
Q ss_pred hHHHHHhC-CcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHh---cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533 391 NKSAIIEN-GGMDKLIVVSARF--SDDASVLQEVMSIITVLS---LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (508)
Q Consensus 391 ~k~~Iv~~-Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La---~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~ 464 (508)
||..|..- |++..||.+|.-- +..-.|.|.|-++|.|.+ ....++++.+.+...+..|++.|+.|+ -.|.-+
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S--LTiVSN 549 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS--LTIVSN 549 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc--eEEeec
Confidence 99999875 5689999999722 223568999999999854 246778899999999999999999885 467789
Q ss_pred HHHHHHHhhhcCccchHHHHhccc
Q 010533 465 SCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 465 A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
+|-.|+||.+|+|+..+.+.+.|+
T Consensus 550 aCGTLWNLSAR~p~DQq~LwD~gA 573 (2195)
T KOG2122|consen 550 ACGTLWNLSARSPEDQQMLWDDGA 573 (2195)
T ss_pred chhhhhhhhcCCHHHHHHHHhccc
Confidence 999999999999999999999885
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.41 E-value=3.5e-11 Score=118.04 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=166.0
Q ss_pred hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010533 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 290 (508)
..+.+++..+.|+.+|+. ..++.+++.++.++++.+ ..+.++..|.+.|+++.+..+|..++..+...|.++|.||+.
T Consensus 6 ~~~l~~~~l~~Ll~lL~~-t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLES-TEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred cCCcCHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 345677788899999985 468999999999999984 567899999999999999999999888888889999999998
Q ss_pred CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ 369 (508)
Q Consensus 291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~ 369 (508)
+++++ ..| + -.++.+++.+.+++ +..++..+..+|.+|++.+++...+.. .++.++.+|..+.
T Consensus 84 ~~en~----------~~I-k-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~-- 147 (254)
T PF04826_consen 84 NDENQ----------EQI-K-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGS-- 147 (254)
T ss_pred ChhhH----------HHH-H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCC--
Confidence 77653 233 2 25777777766654 677888999999999999888777754 7999999998752
Q ss_pred CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
..++..++.+|.+||.++++...++.++++..++.++.+. .+..+...++....||.
T Consensus 148 --~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 148 --EKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENIN 204 (254)
T ss_pred --hHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHH
Confidence 2788999999999999999999999999999999999843 35678889999999996
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=2.3e-11 Score=104.65 Aligned_cols=118 Identities=24% Similarity=0.390 Sum_probs=105.5
Q ss_pred HHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 010533 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITV 427 (508)
Q Consensus 349 ~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~ 427 (508)
.+++.|+++.|+++|.+. +.+++..++.+|++++.. ++.+..+++.|+++.++.+|. .+++.+++.++++|.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~ 75 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRN 75 (120)
T ss_pred hHHHcCChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 467899999999999864 248999999999999875 889999999999999999998 5689999999999999
Q ss_pred HhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 428 LSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 428 La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
|+...+.....+...|+++.+++.|.. .+..+++.++|+|+||+.
T Consensus 76 l~~~~~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 76 LAAGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HccCcHHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhhC
Confidence 998777888889999999999999964 368899999999999863
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.33 E-value=4.3e-09 Score=113.87 Aligned_cols=348 Identities=13% Similarity=0.086 Sum_probs=236.4
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
.....|...+.+. +.....-+++.|++.... +..-...+.+.+.+|.++.+|.. ++.++...|..+|.
T Consensus 77 ~~~~~L~~gL~h~-------~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~ 144 (503)
T PF10508_consen 77 QYQPFLQRGLTHP-------SPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALK 144 (503)
T ss_pred HHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHH
Confidence 3444455555543 666666778888888775 56666788889999999999987 47899999999999
Q ss_pred HhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHH
Q 010533 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (508)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A 281 (508)
.++...+....+++.+++..|..++.. ++..++..++.++.+++..+++..+.+.+.|.++.++.-|.+.+.-++.++
T Consensus 145 ~l~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlna 222 (503)
T PF10508_consen 145 KLASHPEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNA 222 (503)
T ss_pred HHhCCchhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHH
Confidence 998766555667788889999999974 367788889999999999999999999999999999999998444677889
Q ss_pred HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-Ch---hH-HHHHHHHHHHhhcChhhHhHHhhcCCH
Q 010533 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS---PS-LISASIALKAVAVNDEICKSVAENGGI 356 (508)
Q Consensus 282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~---~~-~~~a~~aL~~La~~~e~~~~i~e~Ggi 356 (508)
+..|..|+..+ ...+.+.+.|+++.|++++.... |+ .+ +.......++++..... .+. ++.
T Consensus 223 lell~~La~~~----------~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~--~~~ 288 (503)
T PF10508_consen 223 LELLSELAETP----------HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL--ELY 288 (503)
T ss_pred HHHHHHHHcCh----------hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH--HHH
Confidence 99999998633 23567788999999999998754 33 11 12222345666663211 111 234
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHH-HhCC-cHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCC
Q 010533 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAI-IENG-GMDKLIVVSARF--SDDASVLQEVMSIITVLSLRS 432 (508)
Q Consensus 357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~I-v~~G-gl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La~~~ 432 (508)
|.++..+.+..+..+......|+.+|+.++.+.+++..+ ...| .++..+.....+ +....++..+.-+|+++-...
T Consensus 289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~ 368 (503)
T PF10508_consen 289 PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSG 368 (503)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcC
Confidence 555544443223335588899999999999999999998 5544 456666655433 344679999999999983211
Q ss_pred hh--------hHHHHHhc-Cc--HH-HHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc---cccHHHHhh
Q 010533 433 PE--------NAARAMEA-GS--GD-LAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR---NLSDRQRRT 497 (508)
Q Consensus 433 ~~--------~~~~i~~~-G~--i~-~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~---~~~~~~~~~ 497 (508)
++ ....+.+. |. .. .++.++++ | =++++-.+-..|..++.+ |--.+.+...++ -+.+|...+
T Consensus 369 ~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q-P-F~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfie~lldr~~E~ 445 (503)
T PF10508_consen 369 TDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ-P-FPELRCAAYRLLQALAAQ-PWGQREICSSPGFIEYLLDRSTET 445 (503)
T ss_pred CCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC-C-chHHHHHHHHHHHHHhcC-HHHHHHHHhCccHHhhhcCCCCCC
Confidence 11 12222221 22 23 45555543 1 257777777777777654 333344444433 344455555
Q ss_pred hhh
Q 010533 498 TKS 500 (508)
Q Consensus 498 ~~~ 500 (508)
+|+
T Consensus 446 ~K~ 448 (503)
T PF10508_consen 446 TKE 448 (503)
T ss_pred CHH
Confidence 444
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.23 E-value=1.2e-09 Score=107.32 Aligned_cols=195 Identities=15% Similarity=0.092 Sum_probs=156.7
Q ss_pred HHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCCChhHHHHHHH
Q 010533 258 MELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASI 335 (508)
Q Consensus 258 ~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~ 335 (508)
.+.+-++.|+.+|+... +.+++.+..++.+.+... ..+.+. +.|+++.+..+|.+ +++.+...+.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-----------~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~ 76 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-----------FNQDIIRDLGGISLIGSLLND-PNPSVREKALN 76 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-----------hHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHH
Confidence 55677899999999754 467788889999876533 234444 88999999999987 47889999999
Q ss_pred HHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCH
Q 010533 336 ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA 415 (508)
Q Consensus 336 aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~ 415 (508)
+|.||+.+.++...|-. .++.+++.+..++- +.+++..++++|.+|+-.++....+. +.++.++.+|. .++.
T Consensus 77 aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~l--ns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~--~G~~ 148 (254)
T PF04826_consen 77 ALNNLSVNDENQEQIKM--YIPQVCEETVSSPL--NSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLS--SGSE 148 (254)
T ss_pred HHHhcCCChhhHHHHHH--HHHHHHHHHhcCCC--CCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHH--cCCh
Confidence 99999999999887754 36666665544332 23899999999999998777777665 47999999999 7788
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 416 ~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
.++.+++.+|.||+. +|++.+.++.+++...++.++..... ..+-..+.+...|+..
T Consensus 149 ~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 149 KTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHH
Confidence 999999999999995 99999999999999999999976543 4555677777788854
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.23 E-value=2.6e-10 Score=97.97 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=102.3
Q ss_pred HHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533 308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (508)
Q Consensus 308 i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La 386 (508)
+++.|+++.|+++|.+. +..++..++++|++++.+ ++.+..+++.|+++.++++|.+. +..++..++++|++|+
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNLA 77 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHHc
Confidence 56789999999999875 577999999999999986 78889999999999999999863 3489999999999999
Q ss_pred CCc-hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 387 GSD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 387 ~~~-~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
.++ .....+++.|+++.|+++|. ..+..+++.++++|.+||
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHhh
Confidence 755 66777889999999999998 557899999999999997
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.15 E-value=4.6e-08 Score=105.90 Aligned_cols=305 Identities=11% Similarity=0.103 Sum_probs=215.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-~~~i~~~ggi~ 220 (508)
+.+.+.-+...|..+.+. . ..... ..+..+.|...|.+ +++.++..+++.|..+...... ...+.+.+.++
T Consensus 51 ~~e~v~~~~~iL~~~l~~--~-~~~~l--~~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSA--L-SPDSL--LPQYQPFLQRGLTH---PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhc--c-CHHHH--HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 566666666677776654 1 11112 56678888888887 4778999999999888765533 24456678899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhh
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ 300 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~ 300 (508)
.++.+|. .++.++...|..+|..++. ++..-+.+...+.+..|..++...++.++-.+..++..++...
T Consensus 123 ~i~~~L~--~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S-------- 191 (503)
T PF10508_consen 123 LIIQCLR--DPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS-------- 191 (503)
T ss_pred HHHHHHc--CCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC--------
Confidence 9999996 4689999999999999975 5556667778888999999998855555555777787776433
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCC-cHHHH-HHH
Q 010533 301 VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG-NKTVA-RIC 378 (508)
Q Consensus 301 a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~-~~~v~-~~a 378 (508)
.+....+.+.|.++.++..|++ .|.=++.+++..|..|+..+...+.+.+.|+++.|.+++.+..+++ ...+. -..
T Consensus 192 -~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 192 -PEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred -HHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 3455566688999999999987 5666778999999999999999999999999999999998754433 11222 333
Q ss_pred HHHHHHhhCCchhHHHHHhCCcHHHH----HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhcC-cHHHHHHHH
Q 010533 379 CSLLSKLAGSDSNKSAIIENGGMDKL----IVVSARFSDDASVLQEVMSIITVLSLRSPENAARA-MEAG-SGDLAIQAM 452 (508)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~~Ggl~~L----v~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i-~~~G-~i~~Lv~~L 452 (508)
+...++++..+... +. +..|.+ .+.+. +.++..+..|.-+|..|+. +++-...+ ...| .+..+++..
T Consensus 270 ~~f~g~la~~~~~~--v~--~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~ 342 (503)
T PF10508_consen 270 MKFFGNLARVSPQE--VL--ELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAI 342 (503)
T ss_pred HHHHHHHHhcChHH--HH--HHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHH
Confidence 46667776532111 11 233444 44454 6789999999999999995 77777777 3333 344555544
Q ss_pred HcC--CCcHHHHHHHHHHHHHhhh
Q 010533 453 LKF--PNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 453 ~~h--~~~~~vq~~A~~aL~nL~~ 474 (508)
-.+ +...+++..+.-++.++..
T Consensus 343 ~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 343 GDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHh
Confidence 222 2234577778888888854
No 25
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.14 E-value=2.5e-09 Score=108.94 Aligned_cols=230 Identities=17% Similarity=0.143 Sum_probs=161.5
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhc-------CChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG-------GGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~-------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l 246 (508)
.+..++++|+.. ..+.++....+..+.-++.+.+.+..++.. .-..+++++|.+ +|.-++..++.+|..+
T Consensus 56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSL 132 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 467788888765 236788888999999998877666444321 245778887764 4899999999999998
Q ss_pred hcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH-
Q 010533 247 ATGNEVVKESYMELKIDELILEILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL- 321 (508)
Q Consensus 247 ~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL- 321 (508)
....+....... .+.++.++..|++... +.+..+..+|.+|...+. +...+.+.|+++.|+.+|
T Consensus 133 l~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~----------~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 133 LSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE----------YRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp HTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH----------HHHHHHTHHHHHHHHHHHH
T ss_pred HHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch----------hHHHHHhcCcHHHHHHHHH
Confidence 776554333322 4677888888886322 556778888999986554 344566889999999999
Q ss_pred -----hcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch--hHHH
Q 010533 322 -----HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS--NKSA 394 (508)
Q Consensus 322 -----~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~--~k~~ 394 (508)
.+..+..++..++.++|-|+.+++....+...+.|+.|+++++....+ .|.+-++.+|+||...+. +...
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KE---KvvRv~la~l~Nl~~~~~~~~~~~ 278 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKE---KVVRVSLAILRNLLSKAPKSNIEL 278 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SH---HHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccc---hHHHHHHHHHHHHHhccHHHHHHH
Confidence 222246788999999999999999999999999999999999986543 899999999999987554 8999
Q ss_pred HHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533 395 IIENGGMDKLIVVSARFSDDASVLQE 420 (508)
Q Consensus 395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~ 420 (508)
++..|+++.+-.+..++-+|+++.+.
T Consensus 279 mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 279 MVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 99988888888888777788888765
No 26
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.13 E-value=4.2e-08 Score=102.57 Aligned_cols=285 Identities=14% Similarity=0.145 Sum_probs=198.2
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhc-----CChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTG-----GGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~-----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l 246 (508)
..+..++.+|+.. ...++....+.-+.-++.+.+++ ..|.+. .-..+++.+|. .++.-++..++.+|..+
T Consensus 53 ~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~--~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 53 QYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN--RQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc--CCchhHHHHHHHHHHHH
Confidence 4577888888875 45677888888888888777655 344443 34677888886 35788999999999887
Q ss_pred hcCChhhHHHHHHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC
Q 010533 247 ATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL 325 (508)
Q Consensus 247 ~~~~e~nr~~i~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~ 325 (508)
......+-......-...-|...|++.. ...+.-+...|..|...+..| ..+.+.+++++|+.+|+...
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R----------~~f~~~~~v~~L~~~L~~~~ 198 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR----------FAFVLADGVPTLVKLLSNAT 198 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH----------HHHHHccCHHHHHHHHhhcc
Confidence 6433221111000012334556666543 355555667788888766544 34567789999999998755
Q ss_pred -ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-------hhHHHHHh
Q 010533 326 -SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSAIIE 397 (508)
Q Consensus 326 -d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~Iv~ 397 (508)
+..++..++.++|-|+.+++......+.|.|+.|+++++....+ .|.+-++.+|+||...+ .....++.
T Consensus 199 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KE---KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~ 275 (429)
T cd00256 199 LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKE---KVIRIVLAIFRNLISKRVDREVKKTAALQMVQ 275 (429)
T ss_pred ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhH---HHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 45788999999999999988888888889999999999986543 89999999999997532 34456777
Q ss_pred CCcHHHHHHHHhccCCCHHHHHH---------------------------------------------------------
Q 010533 398 NGGMDKLIVVSARFSDDASVLQE--------------------------------------------------------- 420 (508)
Q Consensus 398 ~Ggl~~Lv~lL~~~~~~~~v~e~--------------------------------------------------------- 420 (508)
.|.++.+-.+..++-+|+.+.+.
T Consensus 276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ll 355 (429)
T cd00256 276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELL 355 (429)
T ss_pred cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHH
Confidence 66655554454444444322211
Q ss_pred ------------------HHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533 421 ------------------VMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 421 ------------------a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
||-=|..++...|.-+..+-..|+=..++++|. |+ ++.|+.+|..++.-|..++
T Consensus 356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~-h~-d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN-HE-DPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc-CC-CHHHHHHHHHHHHHHHHhc
Confidence 444455555556666777777888888999995 64 6899999999988876543
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.7e-07 Score=96.30 Aligned_cols=318 Identities=11% Similarity=0.113 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH
Q 010533 145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN 224 (508)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~ 224 (508)
.++-|+.-|.+++. +..--......+.|..||..|... +.+++.....-|--|.--.+++....+.|.++.|++
T Consensus 279 LLrva~ylLlNlAe---d~~~ElKMrrkniV~mLVKaLdr~---n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAE---DISVELKMRRKNIVAMLVKALDRS---NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHhh---hhhHHHHHHHHhHHHHHHHHHccc---chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHH
Confidence 34456666666665 333334566778899999999874 456665555555444433455677778899999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchH
Q 010533 225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGY 304 (508)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~ 304 (508)
+.- ..++++...++..|-+++ -+..+|...+..|.+|.|..+|.+... ..-|...|..|+.+|+.+.
T Consensus 353 lfp--~~h~dL~~~tl~LlfNlS-FD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~-------- 419 (791)
T KOG1222|consen 353 LFP--IQHPDLRKATLMLLFNLS-FDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKA-------- 419 (791)
T ss_pred hcC--CCCHHHHHHHHHHhhhcc-ccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHH--------
Confidence 985 568999999999999984 556688899999999999999987532 2335667888998886543
Q ss_pred HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH------------HHHhccCCCC--
Q 010533 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL------------RCIDDSGLQG-- 370 (508)
Q Consensus 305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv------------~lL~~~~~~~-- 370 (508)
+++-..+|+.++..+-.+++..+-.++...--||+.+..|.+-+++-.|++.|+ ++++.-..++
T Consensus 420 --MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~ 497 (791)
T KOG1222|consen 420 --MFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGA 497 (791)
T ss_pred --HHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccch
Confidence 344567899999888777755443333333347787777777777766766544 2222111111
Q ss_pred --------------------cHHHHHHHHHHHHHhhCCchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 371 --------------------NKTVARICCSLLSKLAGSDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 371 --------------------~~~v~~~al~aL~~La~~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+....-+|++.|++|+-.|--...|+ +..-+|.+-.-|........++-..+-++..++
T Consensus 498 tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 498 TQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA 577 (791)
T ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence 23455688999999987776666665 556789888888865555677777777888787
Q ss_pred cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
++..++.-+..+|.++.++++|+..-.+.+..-+-.....-+..+ ...|..++.
T Consensus 578 -~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mik 631 (791)
T KOG1222|consen 578 -RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIK 631 (791)
T ss_pred -hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 577777778888999999999987655444433444444444333 334444443
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=6.7e-08 Score=98.40 Aligned_cols=243 Identities=13% Similarity=0.075 Sum_probs=165.7
Q ss_pred hHHHhcC---ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc------CcHHHHHHHHhcCChHHHHHH
Q 010533 211 ETFRTGG---GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL------KIDELILEILSRQRNDSIQSL 281 (508)
Q Consensus 211 ~~i~~~g---gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~------G~i~~Lv~lL~~~~~~~~~~A 281 (508)
..+++.. ....++.+|..-..+.++....+..+..++..++...+.+.+. ....+++.++.+++.-+...+
T Consensus 46 ~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a 125 (312)
T PF03224_consen 46 RELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKA 125 (312)
T ss_dssp ----------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHH
T ss_pred HHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHH
Confidence 3455433 3677888887644678999999999999988887666666542 257888888887765667778
Q ss_pred HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHH
Q 010533 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAVNDEICKSVAENGGIDA 358 (508)
Q Consensus 282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~ 358 (508)
+..|..|...++.+.. .. ..+.++.+++.|++... .+.+.-+..+|.+|...++++..+.+.||++.
T Consensus 126 ~~iLt~Ll~~~~~~~~---------~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~ 195 (312)
T PF03224_consen 126 AFILTSLLSQGPKRSE---------KL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSP 195 (312)
T ss_dssp HHHHHHHHTSTTT--H---------HH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCcccc---------ch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHH
Confidence 8888888765543221 10 13567888888887432 34567788899999999999999999999999
Q ss_pred HHHHHhc---cCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-
Q 010533 359 LLRCIDD---SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE- 434 (508)
Q Consensus 359 Lv~lL~~---~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~- 434 (508)
+..+|.. .....+..++=+++.+|+-|+.+++....+.+.+.++.|+++++.. ..+.|.+-++++|.||....++
T Consensus 196 l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvRv~la~l~Nl~~~~~~~ 274 (312)
T PF03224_consen 196 LFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDS-IKEKVVRVSLAILRNLLSKAPKS 274 (312)
T ss_dssp HHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTT
T ss_pred HHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhc-ccchHHHHHHHHHHHHHhccHHH
Confidence 9999921 1112345788899999999999999999999999999999999853 4689999999999999976554
Q ss_pred hHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (508)
Q Consensus 435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~ 464 (508)
+...++..|+.+.+-.+..++-+|+++...
T Consensus 275 ~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 275 NIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 888999998888887777666667776543
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2e-06 Score=88.59 Aligned_cols=313 Identities=12% Similarity=0.055 Sum_probs=214.3
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHH
Q 010533 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFA 241 (508)
Q Consensus 162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~ 241 (508)
-.+|+....+.|.|..|+.+... .+++++...+..+-++.=+...|++.+..|-+|.++.+|.+.. -...|+.
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~---~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~----~~~iA~~ 406 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPI---QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT----KHGIALN 406 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCC---CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc----cchhhhh
Confidence 46788899999999999998876 4778888888888888777777899999999999999996431 1234666
Q ss_pred HHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhh--hh--------cc--------
Q 010533 242 VVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVA--SQ--------VY-------- 302 (508)
Q Consensus 242 ~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~--~~--------a~-------- 302 (508)
.+.++ +-++..|..+.-..+|+.+.+.+-++.+ ++-....+.--|||.+..+.... |+ +.
T Consensus 407 ~lYh~-S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLm 485 (791)
T KOG1222|consen 407 MLYHL-SCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLM 485 (791)
T ss_pred hhhhh-ccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHH
Confidence 77776 4567788889888999999988876654 33222222224666544321100 00 00
Q ss_pred hHHHHHHhc-C--------CHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhccCCCCcH
Q 010533 303 GYARRFAKI-G--------IARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNK 372 (508)
Q Consensus 303 ~~~~~i~~~-g--------~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~ 372 (508)
.-.|.|.++ | .+..|...++...+.+-..+..++|++|+..+ +..+.+-+..-||-+-.-|....++.
T Consensus 486 K~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~ed-- 563 (791)
T KOG1222|consen 486 KVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADED-- 563 (791)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccch--
Confidence 011222211 1 24445555554333445566777888888855 34444445566777777777655544
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHH
Q 010533 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM-EAGSGDLAIQA 451 (508)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~-~~G~i~~Lv~~ 451 (508)
+++-+.+-+++.+|..++....+..+|.++.++++|+....+....-+..-+...+-. ++.-+..++ +......++.+
T Consensus 564 dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~-He~tr~~miket~~~AylIDL 642 (791)
T KOG1222|consen 564 DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLK-HELTRRLMIKETALGAYLIDL 642 (791)
T ss_pred hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHHHHHHHHhhccchHHHHHH
Confidence 7888888999999988899999999999999999999666666666666666666653 444455444 44556789999
Q ss_pred HHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 452 MLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 452 L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
| |..+..+++-+-.+|--++.++.|-.+.+.-+.
T Consensus 643 M--HDkN~eiRkVCDn~LdIiae~d~EWAKrI~~Ek 676 (791)
T KOG1222|consen 643 M--HDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEK 676 (791)
T ss_pred H--hcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 9 667888887777788888888787777766544
No 30
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-07 Score=99.49 Aligned_cols=251 Identities=10% Similarity=0.048 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCCh
Q 010533 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGP 219 (508)
Q Consensus 141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi 219 (508)
+|...+.+++.+|.+...-. +.+--.-+--.-.||.|+.||+... ..++...|+.+|++|++-. .+...+++.++|
T Consensus 180 ~Des~Qleal~Elce~L~mg-nEesLs~fpv~slvp~Lv~LL~~E~--n~DIMl~AcRaltyl~evlP~S~a~vV~~~aI 256 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMG-NEESLSGFPVKSLVPVLVALLSHEH--NFDIMLLACRALTYLCEVLPRSSAIVVDEHAI 256 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhc-chhhhccccHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHhhccchhheeecccch
Confidence 37888888888887765420 2222223333457999999999863 5788888999999998755 445677899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCC---Ccchh
Q 010533 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP---DDDQV 296 (508)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~---dd~r~ 296 (508)
|.|++=|.. -+..++.++++.+|-.+...|+ ..|.++|++...+..|.-.+..+++.|.++..|+|.. |+.
T Consensus 257 Pvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-- 330 (1051)
T KOG0168|consen 257 PVLLEKLLT-IEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-- 330 (1051)
T ss_pred HHHHHhhhh-hhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--
Confidence 999986642 4678999999999999977666 5788999999999999877778999999888888842 322
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHHHHHHhccCCCCcH
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENGGIDALLRCIDDSGLQGNK 372 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~ 372 (508)
..++ .++|.|..+|+.. |...++.+|.++.+++. .++.-+.+...|-|.-...|+.-.+..-+.
T Consensus 331 ---------~~v~--ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~ 398 (1051)
T KOG0168|consen 331 ---------HFVM--EALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSN 398 (1051)
T ss_pred ---------hHHH--HHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccc
Confidence 1344 3699999999875 56688999999988875 345567888888888888888643222233
Q ss_pred HHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccC
Q 010533 373 TVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 373 ~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
.+....+..|..++. ++.....+.+.+....|..+|..++
T Consensus 399 ~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 399 GTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred cchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence 567777888888875 5888888889898899999987443
No 31
>PRK09687 putative lyase; Provisional
Probab=98.85 E-value=9.9e-07 Score=88.29 Aligned_cols=254 Identities=13% Similarity=0.047 Sum_probs=175.9
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
++.|...+.+. |......++..|..+- + ..+++.+..++.+ .+..+...+.++|..+
T Consensus 25 ~~~L~~~L~d~-------d~~vR~~A~~aL~~~~----~---------~~~~~~l~~ll~~---~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 25 DDELFRLLDDH-------NSLKRISSIRVLQLRG----G---------QDVFRLAIELCSS---KNPIERDIGADILSQL 81 (280)
T ss_pred HHHHHHHHhCC-------CHHHHHHHHHHHHhcC----c---------chHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 55566666554 6666677777776552 1 2357788888877 4788888899999987
Q ss_pred hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHH
Q 010533 204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD 283 (508)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~ 283 (508)
-..... ....++.|..++.. ..+..|+..++.+|++++..... . ...++..+...+...+..+...+++
T Consensus 82 g~~~~~-----~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~~~~~~~~-~----~~~a~~~l~~~~~D~~~~VR~~a~~ 150 (280)
T PRK09687 82 GMAKRC-----QDNVFNILNNLALE-DKSACVRASAINATGHRCKKNPL-Y----SPKIVEQSQITAFDKSTNVRFAVAF 150 (280)
T ss_pred CCCccc-----hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcccccccc-c----chHHHHHHHHHhhCCCHHHHHHHHH
Confidence 542210 12345666666443 45789999999999998643321 1 0113455666666655578888888
Q ss_pred HHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHH
Q 010533 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI 363 (508)
Q Consensus 284 aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL 363 (508)
+|..+.. ..+++.|+.+|++ +++.+...++.+|+.+...++ ..++.|+.+|
T Consensus 151 aLg~~~~--------------------~~ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L 201 (280)
T PRK09687 151 ALSVIND--------------------EAAIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP--------DIREAFVAML 201 (280)
T ss_pred HHhccCC--------------------HHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHh
Confidence 8865531 1368999999986 467788999999998843221 3467889999
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533 364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (508)
Q Consensus 364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G 443 (508)
.+. +.+|...|+.+|+.+-. ..++|.|+..|. .++ ++..++.+|..+. ++ -
T Consensus 202 ~D~----~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~--~~~--~~~~a~~ALg~ig--~~---------~ 252 (280)
T PRK09687 202 QDK----NEEIRIEAIIGLALRKD----------KRVLSVLIKELK--KGT--VGDLIIEAAGELG--DK---------T 252 (280)
T ss_pred cCC----ChHHHHHHHHHHHccCC----------hhHHHHHHHHHc--CCc--hHHHHHHHHHhcC--CH---------h
Confidence 753 34899999999988532 257999999998 333 6677888888875 33 2
Q ss_pred cHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533 444 SGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (508)
Q Consensus 444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~ 470 (508)
.++.|.+++..++ +..|++.|-++|.
T Consensus 253 a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 5788999998776 7889999988875
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.82 E-value=2.5e-06 Score=89.42 Aligned_cols=275 Identities=13% Similarity=0.126 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~ 221 (508)
|.-....+...|..+... ++.+..-....-.++.|...|++. .+.+.+.-|+..|..++...+-|..|.+.+|++.
T Consensus 114 d~~i~~~a~~iLt~l~~~--~~~~~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~ 189 (429)
T cd00256 114 DQFIVHMSFSILAKLACF--GLAKMEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPT 189 (429)
T ss_pred chhHHHHHHHHHHHHHhc--CccccchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCCchHHHHHHHccCHHH
Confidence 555566677777776543 222111111111234455555543 2344555566777777777777888999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhh
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQ 300 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~ 300 (508)
|+.+|+.......++-.++-+++-++ -++.......+.+.|+.|+++++.... .++|-+..+|+||....... +.
T Consensus 190 L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~---~~ 265 (429)
T cd00256 190 LVKLLSNATLGFQLQYQSIFCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR---EV 265 (429)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc---ch
Confidence 99999876557788989998888874 444455555677999999999997654 68888999999998533111 00
Q ss_pred cchHHHHHHhcCCHHHHHHHHhcC--CChhHHHHHHH-------HHHHhhcC------------------------hhhH
Q 010533 301 VYGYARRFAKIGIARALVHSLHAG--LSSPSLISASI-------ALKAVAVN------------------------DEIC 347 (508)
Q Consensus 301 a~~~~~~i~~~g~i~~Lv~lL~~~--~d~~~~~~a~~-------aL~~La~~------------------------~e~~ 347 (508)
.......+++.|.++ +++.|... +|+++..++-. .+..++.- .||.
T Consensus 266 ~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~ 344 (429)
T cd00256 266 KKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENA 344 (429)
T ss_pred hhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHH
Confidence 112344566666555 55555543 36655544322 11223321 2456
Q ss_pred hHHhhcCC--HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHH
Q 010533 348 KSVAENGG--IDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSI 424 (508)
Q Consensus 348 ~~i~e~Gg--i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~a 424 (508)
.++-+.+. ++.|+++|..+.+ +.++.-||.=|+.++. .|.+|..+-+-||=+.++++|. .+++.|+.+|+.+
T Consensus 345 ~kf~~~~~~llk~L~~iL~~s~d---~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~--h~d~~Vr~eAL~a 419 (429)
T cd00256 345 DRLNEKNYELLKILIHLLETSVD---PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN--HEDPNVRYEALLA 419 (429)
T ss_pred HHHHhcchHHHHHHHHHHhcCCC---cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHH
Confidence 66666553 5778889965433 3677888888999885 6788888888999999999998 6799999999999
Q ss_pred HHHHhc
Q 010533 425 ITVLSL 430 (508)
Q Consensus 425 L~~La~ 430 (508)
+--|..
T Consensus 420 vQklm~ 425 (429)
T cd00256 420 VQKLMV 425 (429)
T ss_pred HHHHHH
Confidence 887754
No 33
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.72 E-value=1.2e-05 Score=85.90 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=119.4
Q ss_pred ChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHH
Q 010533 326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDK 403 (508)
Q Consensus 326 d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~ 403 (508)
|......+|.++.+++.. .....-..+..+..+|+.++.++ + ..|...++++|.||.. ...-|..+++.|||+.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~---~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-E---IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-c---hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 344556666666666542 22223355667889999999653 2 3799999999999974 5678889999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH-HHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG-DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC 482 (508)
Q Consensus 404 Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i-~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~ 482 (508)
|.+.+. ..++.++..+.|+|+++..+..+-.+........ ..|+.+. .. .+..||+++-..+||++-.+.+....
T Consensus 466 l~s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~-nd-~d~~Vqeq~fqllRNl~c~~~~svdf 541 (678)
T KOG1293|consen 466 LESMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI-ND-PDWAVQEQCFQLLRNLTCNSRKSVDF 541 (678)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH-hC-CCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 999998 6678999999999999998777665554444443 3444444 33 46899999999999999988899999
Q ss_pred HHhccccccHH
Q 010533 483 SVMVSRNLSDR 493 (508)
Q Consensus 483 ~~~~g~~~~~~ 493 (508)
+++.-..+.+.
T Consensus 542 ll~~~~~~ld~ 552 (678)
T KOG1293|consen 542 LLEKFKDVLDK 552 (678)
T ss_pred HHHhhhHHHHH
Confidence 99876544443
No 34
>PRK09687 putative lyase; Provisional
Probab=98.66 E-value=4.7e-06 Score=83.45 Aligned_cols=248 Identities=8% Similarity=-0.004 Sum_probs=167.2
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n 253 (508)
.++.|..+|.+ .+..+...++.+|..+-. ....+.+..++. ++++.++..++++|+.+.. .+..
T Consensus 24 ~~~~L~~~L~d---~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~-~~~~ 87 (280)
T PRK09687 24 NDDELFRLLDD---HNSLKRISSIRVLQLRGG----------QDVFRLAIELCS--SKNPIERDIGADILSQLGM-AKRC 87 (280)
T ss_pred cHHHHHHHHhC---CCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh--CCCHHHHHHHHHHHHhcCC-Cccc
Confidence 37788888876 477888888888775432 234566777765 4689999999999998732 1111
Q ss_pred HHHHHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533 254 KESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (508)
Q Consensus 254 r~~i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~ 332 (508)
...+++.|..++.. .+..+...|+.+|..++...... ...+++.+..++.+. +..+...
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--------------~~~a~~~l~~~~~D~-~~~VR~~ 147 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--------------SPKIVEQSQITAFDK-STNVRFA 147 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--------------chHHHHHHHHHhhCC-CHHHHHH
Confidence 11356777777444 34477778999999886432110 011345555555543 6778888
Q ss_pred HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
++.+|+.+... .+++.|+.+|.+. +.+|...|+.+|+.+...+ ...++.|+.+|. .
T Consensus 148 a~~aLg~~~~~----------~ai~~L~~~L~d~----~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~--D 203 (280)
T PRK09687 148 VAFALSVINDE----------AAIPLLINLLKDP----NGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQ--D 203 (280)
T ss_pred HHHHHhccCCH----------HHHHHHHHHhcCC----CHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhc--C
Confidence 89988766432 2678999999863 3489999999999983211 145678999997 6
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc-cccc
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS-RNLS 491 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g-~~~~ 491 (508)
.++.|+..|+++|..+- ++ -+++.|++.++.. .+...++.||.++. +++....+...- ..-.
T Consensus 204 ~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~~----~~~~~a~~ALg~ig--~~~a~p~L~~l~~~~~d 266 (280)
T PRK09687 204 KNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKKG----TVGDLIIEAAGELG--DKTLLPVLDTLLYKFDD 266 (280)
T ss_pred CChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcCC----chHHHHHHHHHhcC--CHhHHHHHHHHHhhCCC
Confidence 68999999999998863 33 4688999999642 26678999999874 466666665532 2334
Q ss_pred HHHHhhh
Q 010533 492 DRQRRTT 498 (508)
Q Consensus 492 ~~~~~~~ 498 (508)
.+-+++.
T Consensus 267 ~~v~~~a 273 (280)
T PRK09687 267 NEIITKA 273 (280)
T ss_pred hhHHHHH
Confidence 4444443
No 35
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00016 Score=78.81 Aligned_cols=340 Identities=13% Similarity=0.125 Sum_probs=232.2
Q ss_pred ChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHH
Q 010533 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL 197 (508)
Q Consensus 118 ~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al 197 (508)
+.+.+.++.|..-+.+.. =.++-+.|++.|..+++ .+|..++..| +++|+..|+..- .|+++...+|
T Consensus 18 ~s~aETI~kLcDRvessT------L~eDRR~A~rgLKa~sr-----kYR~~Vga~G-mk~li~vL~~D~-~D~E~ik~~L 84 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESST------LLEDRRDAVRGLKAFSR-----KYREEVGAQG-MKPLIQVLQRDY-MDPEIIKYAL 84 (970)
T ss_pred ccHHhHHHHHHHHHhhcc------chhhHHHHHHHHHHHHH-----HHHHHHHHcc-cHHHHHHHhhcc-CCHHHHHHHH
Confidence 456778888877665531 46788899999988865 4776766554 888889887643 5889999999
Q ss_pred HHHHHhhcCC-------cch----------hHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CChhhHHHHH
Q 010533 198 KTMALLVHDV-------QST----------ETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT-GNEVVKESYM 258 (508)
Q Consensus 198 ~aLa~l~~~~-------~~~----------~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-~~e~nr~~i~ 258 (508)
.++..+.... +++ +.|+. .+-|..|+..+... |-.|+..++..+.++.+ ...+.++.++
T Consensus 85 dTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 85 DTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999886422 222 22333 46788888888743 66788888888888644 4456788888
Q ss_pred Hc-CcHHHHHHHHhcCChHHHHH-HHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC--Ch-hHHHH
Q 010533 259 EL-KIDELILEILSRQRNDSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--SS-PSLIS 332 (508)
Q Consensus 259 ~~-G~i~~Lv~lL~~~~~~~~~~-A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~--d~-~~~~~ 332 (508)
.. -||..|+.+|.... +++++ +.-.|..|+.+. .++++++ =.++.+.|.+++.... |. -++.+
T Consensus 163 ~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n----------~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveD 231 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDN----------SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVED 231 (970)
T ss_pred HCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccC----------chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 77 48999999998644 55565 566666777543 3456666 2389999999998744 43 35677
Q ss_pred HHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhccCCCCc--------HHH--HHHHHHHHHHhhC--Cc-----hhHHH
Q 010533 333 ASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGN--------KTV--ARICCSLLSKLAG--SD-----SNKSA 394 (508)
Q Consensus 333 a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~~~~~~--------~~v--~~~al~aL~~La~--~~-----~~k~~ 394 (508)
+...|-||-.++ .|-..+.+.|-|+.|..+|..+. .++ ..| +..++.+++.|.. +. .+..+
T Consensus 232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~-~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~ 310 (970)
T KOG0946|consen 232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFE-FGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKA 310 (970)
T ss_pred HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccc-ccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 777788888754 55666667777999998886431 111 111 2356777777752 32 24457
Q ss_pred HHhCCcHHHHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc---------HHHHHHHHHcCCCcHHHHHH
Q 010533 395 IIENGGMDKLIVVSARFS-DDASVLQEVMSIITVLSLRSPENAARAMEAGS---------GDLAIQAMLKFPNAQQLQRS 464 (508)
Q Consensus 395 Iv~~Ggl~~Lv~lL~~~~-~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~---------i~~Lv~~L~~h~~~~~vq~~ 464 (508)
+...+++..|..++- |+ -...|+..+.-++++...+|..|+..+....+ +-.+.-.|-........+-.
T Consensus 311 l~ss~ll~~Lc~il~-~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA 389 (970)
T KOG0946|consen 311 LVSSHLLDVLCTILM-HPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA 389 (970)
T ss_pred HHHcchHHHHHHHHc-CCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence 888899999999886 33 34679999999999999999888888876432 12222223222222334334
Q ss_pred HHHHHHHhhhcCccchHHHHh
Q 010533 465 SCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 465 A~~aL~nL~~~~~e~~~~~~~ 485 (508)
....++....+|.+....|+.
T Consensus 390 v~ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 390 VLYCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHHHHHhcchhhHHHHHH
Confidence 455777777888888777765
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.61 E-value=1.9e-05 Score=91.43 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=119.0
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~ 252 (508)
+++|.|+.+|+. ++.++...|+.+|..+.... .-.+.|...|.+ +++.++..++.+|..+-.
T Consensus 652 ~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~---------~~~~~L~~~L~~--~d~~VR~~A~~aL~~~~~---- 713 (897)
T PRK13800 652 GFGPALVAALGD---GAAAVRRAAAEGLRELVEVL---------PPAPALRDHLGS--PDPVVRAAALDVLRALRA---- 713 (897)
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhcc---------CchHHHHHHhcC--CCHHHHHHHHHHHHhhcc----
Confidence 467888888865 47778877777776653211 112456666753 577888888877776421
Q ss_pred hHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (508)
Q Consensus 253 nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~ 332 (508)
+-...|+..|...+..+...|+.+|..+- ..+.|..++.+ .++.+...
T Consensus 714 --------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-----------------------~~~~l~~~l~D-~~~~VR~~ 761 (897)
T PRK13800 714 --------GDAALFAAALGDPDHRVRIEAVRALVSVD-----------------------DVESVAGAATD-ENREVRIA 761 (897)
T ss_pred --------CCHHHHHHHhcCCCHHHHHHHHHHHhccc-----------------------CcHHHHHHhcC-CCHHHHHH
Confidence 12335666777666566667776666431 12334444443 24556666
Q ss_pred HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
++.+|..+...+ .++++.|..++.+. ++.|+..++.+|+.+...+ ..++.++.+|. .
T Consensus 762 aa~aL~~~~~~~--------~~~~~~L~~ll~D~----d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~--d 818 (897)
T PRK13800 762 VAKGLATLGAGG--------APAGDAVRALTGDP----DPLVRAAALAALAELGCPP---------DDVAAATAALR--A 818 (897)
T ss_pred HHHHHHHhcccc--------chhHHHHHHHhcCC----CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc--C
Confidence 666666554321 12245566555542 2366666666666653211 11234555565 4
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
+++.|+..|+.+|..+.. + ..++.|+.+|+. .+..|++.|.++|..+
T Consensus 819 ~d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D--~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA--D---------VAVPALVEALTD--PHLDVRKAAVLALTRW 865 (897)
T ss_pred CChHHHHHHHHHHHhccc--c---------chHHHHHHHhcC--CCHHHHHHHHHHHhcc
Confidence 456666666666665531 1 123556666642 3456666666666654
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.1e-05 Score=88.06 Aligned_cols=248 Identities=11% Similarity=0.076 Sum_probs=185.4
Q ss_pred CHHHHHHHHHHHHHhhc-CCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHH
Q 010533 189 SKRVLDSCLKTMALLVH-DVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELI 266 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~-~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~L 266 (508)
|+..+..++.-|+.++. +++.. .-|--.-.+|.|+.+|+.. .+.+++..||++|.++|.-.+.....+++.|+||.|
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E-~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl 259 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE-HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL 259 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence 77778778887777553 33211 1222234689999999864 569999999999999998778778888899999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--C
Q 010533 267 LEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--N 343 (508)
Q Consensus 267 v~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~ 343 (508)
++-|..-.- ++-+.+..||-.|+.. |-+.|.++|+|-..+..|.=++ -.++..|.....|++. .
T Consensus 260 ~~kL~~IeyiDvAEQ~LqALE~iSR~------------H~~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 260 LEKLLTIEYIDVAEQSLQALEKISRR------------HPKAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHhh------------ccHHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 988876433 6667778888888753 4567889999999999887653 4566677666777775 3
Q ss_pred hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC---C-chhHHHHHhCCcHHHHHHHHhccC--CCHHH
Q 010533 344 DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG---S-DSNKSAIIENGGMDKLIVVSARFS--DDASV 417 (508)
Q Consensus 344 ~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~---~-~~~k~~Iv~~Ggl~~Lv~lL~~~~--~~~~v 417 (508)
.+--..|+| .+|.|-.+|+.+. ...++.+|-++..++. + ++--+.+...|-|.-+.++|.-.. -+..+
T Consensus 327 sd~f~~v~e--alPlL~~lLs~~D----~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~ 400 (1051)
T KOG0168|consen 327 SDEFHFVME--ALPLLTPLLSYQD----KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGT 400 (1051)
T ss_pred CccchHHHH--HHHHHHHHHhhcc----chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccc
Confidence 444455555 5899999998753 2688999999999872 3 344577888999999999986211 11234
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCC
Q 010533 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP 456 (508)
Q Consensus 418 ~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~ 456 (508)
.-..+.+|..+|.+.|.....+...++...|..+|..+.
T Consensus 401 ~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s 439 (1051)
T KOG0168|consen 401 YTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYS 439 (1051)
T ss_pred hhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccC
Confidence 556778889999988999999999999999999996543
No 38
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.48 E-value=7.1e-05 Score=86.82 Aligned_cols=211 Identities=11% Similarity=0.062 Sum_probs=152.5
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr 254 (508)
.+.|..+|++ ++..++..++.+|..+-. +....++..|. .++..++..++++|..+
T Consensus 686 ~~~L~~~L~~---~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~--D~d~~VR~~Av~aL~~~-------- 741 (897)
T PRK13800 686 APALRDHLGS---PDPVVRAAALDVLRALRA-----------GDAALFAAALG--DPDHRVRIEAVRALVSV-------- 741 (897)
T ss_pred hHHHHHHhcC---CCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhc--CCCHHHHHHHHHHHhcc--------
Confidence 3677778876 477888888888876532 22456777776 46889999999988764
Q ss_pred HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHH
Q 010533 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS 334 (508)
Q Consensus 255 ~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~ 334 (508)
+..+.|..++...+..+...++.+|..+...+ ...++.|..++++. ++.+...++
T Consensus 742 ------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~------------------~~~~~~L~~ll~D~-d~~VR~aA~ 796 (897)
T PRK13800 742 ------DDVESVAGAATDENREVRIAVAKGLATLGAGG------------------APAGDAVRALTGDP-DPLVRAAAL 796 (897)
T ss_pred ------cCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc------------------chhHHHHHHHhcCC-CHHHHHHHH
Confidence 11244667777777788888999998775322 13478888888764 688888998
Q ss_pred HHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCC
Q 010533 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (508)
Q Consensus 335 ~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~ 414 (508)
.+|+.+...+. .+..++..|.+. ++.|...|+.+|..+.. ...++.|+.+|. .++
T Consensus 797 ~aLg~~g~~~~---------~~~~l~~aL~d~----d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~--D~~ 851 (897)
T PRK13800 797 AALAELGCPPD---------DVAAATAALRAS----AWQVRQGAARALAGAAA----------DVAVPALVEALT--DPH 851 (897)
T ss_pred HHHHhcCCcch---------hHHHHHHHhcCC----ChHHHHHHHHHHHhccc----------cchHHHHHHHhc--CCC
Confidence 88888754321 235577778653 34799999999987642 235689999998 778
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471 (508)
Q Consensus 415 ~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n 471 (508)
..|+..|+.+|..+. .++. ..+.|..+++. .++.|++.|..||..
T Consensus 852 ~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D--~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 852 LDVRKAAVLALTRWP-GDPA---------ARDALTTALTD--SDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhC--CCHHHHHHHHHHHhh
Confidence 999999999999873 3443 34566777863 578999999999864
No 39
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0002 Score=78.08 Aligned_cols=267 Identities=16% Similarity=0.181 Sum_probs=190.6
Q ss_pred hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------hhH----------HHHH-HcCcHHHHHHHHhcC
Q 010533 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------VVK----------ESYM-ELKIDELILEILSRQ 273 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e------~nr----------~~i~-~~G~i~~Lv~lL~~~ 273 (508)
..-+.+.|+++++..|.+...|+++...++..+..+.+..+ +.+ +.++ ..+-|..|+..+...
T Consensus 55 R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~ 134 (970)
T KOG0946|consen 55 REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF 134 (970)
T ss_pred HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh
Confidence 44566789999999999888899999999999998866543 222 3444 447889999999876
Q ss_pred ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh
Q 010533 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352 (508)
Q Consensus 274 ~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e 352 (508)
+-.+.+.+...|.+|...--. +-...+. ---||..|+.+|++... .+.-++...|..|..++...++++.
T Consensus 135 DF~VR~~aIqLlsalls~r~~--------e~q~~ll~~P~gIS~lmdlL~DsrE-~IRNe~iLlL~eL~k~n~~IQKlVA 205 (970)
T KOG0946|consen 135 DFHVRLYAIQLLSALLSCRPT--------ELQDALLVSPMGISKLMDLLRDSRE-PIRNEAILLLSELVKDNSSIQKLVA 205 (970)
T ss_pred chhhhhHHHHHHHHHHhcCCH--------HHHHHHHHCchhHHHHHHHHhhhhh-hhchhHHHHHHHHHccCchHHHHHH
Confidence 657888888888887643211 1222333 33789999999987432 2455666778889888888877664
Q ss_pred -cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccC-CC--------HH--HHH
Q 010533 353 -NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFS-DD--------AS--VLQ 419 (508)
Q Consensus 353 -~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~-~~--------~~--v~e 419 (508)
..+...|.+++...+....--|+..|+.+|-||- .|..|..-+.+.+-||.|..+|..+- .+ .. ..-
T Consensus 206 FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~ 285 (970)
T KOG0946|consen 206 FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI 285 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHH
Confidence 5678889999986432111258899999999986 57789999998888999998885321 11 11 123
Q ss_pred HHHHHHHHHhc-CC-----hhhHHHHHhcCcHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 420 EVMSIITVLSL-RS-----PENAARAMEAGSGDLAIQAMLKFPN-AQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 420 ~a~~aL~~La~-~~-----~~~~~~i~~~G~i~~Lv~~L~~h~~-~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
.++-++..|.. +| ..|.+.+...+++..|+.++ .|++ ..+|+..+...+.+++.+|..+...|.+-.
T Consensus 286 ~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il-~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~ 359 (970)
T KOG0946|consen 286 EALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTIL-MHPGVPADILTESIITVAEVVRGNARNQDEFADVT 359 (970)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHH-cCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 34455555542 12 23456788889999999887 4664 457888898899999988888888887653
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.40 E-value=4.7e-05 Score=82.82 Aligned_cols=288 Identities=16% Similarity=0.125 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh-hcCCcchhHHHhcCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL-VHDVQSTETFRTGGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l-~~~~~~~~~i~~~ggi~ 220 (508)
+..-.+.|+-.+.++.+. +|+ .+... .+|.|..+|.. .+..++..|+.++..+ .++ .... ..++
T Consensus 127 ~~~VRk~A~~~l~~i~~~--~p~---~~~~~-~~~~l~~lL~d---~~~~V~~~a~~~l~~i~~~~-----~~~~-~~~~ 191 (526)
T PF01602_consen 127 SPYVRKKAALALLKIYRK--DPD---LVEDE-LIPKLKQLLSD---KDPSVVSAALSLLSEIKCND-----DSYK-SLIP 191 (526)
T ss_dssp SHHHHHHHHHHHHHHHHH--CHC---CHHGG-HHHHHHHHTTH---SSHHHHHHHHHHHHHHHCTH-----HHHT-THHH
T ss_pred chHHHHHHHHHHHHHhcc--CHH---HHHHH-HHHHHhhhccC---CcchhHHHHHHHHHHHccCc-----chhh-hhHH
Confidence 344445566666666554 333 22222 57777777755 3677777777777776 221 1111 3344
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhh
Q 010533 221 LLVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA 298 (508)
Q Consensus 221 ~Lv~lL~~--~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~ 298 (508)
.+++.|.+ ...++..+...++++...+...+..... ...++.+...|.+.+..++-+++.++..+...+.
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----- 263 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----- 263 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----
Confidence 44444331 2457888888888888776555544411 3456677777776555777777777777653221
Q ss_pred hhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHH
Q 010533 299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (508)
Q Consensus 299 ~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~a 378 (508)
.-..++++|+.+|.+ +++++..-++.+|..++... ...+ . .....+..+.... +..+...+
T Consensus 264 ----------~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~---d~~Ir~~~ 324 (526)
T PF01602_consen 264 ----------LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDD---DPSIRKKA 324 (526)
T ss_dssp ----------HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSS---SHHHHHHH
T ss_pred ----------HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCC---ChhHHHHH
Confidence 112568999999984 56778888888888888754 1122 2 3344555665322 35899999
Q ss_pred HHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCc
Q 010533 379 CSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNA 458 (508)
Q Consensus 379 l~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~ 458 (508)
+.+|..++. +.|...| ++.|...+.. ..++.+++.++.+|..++.+.+...... +..+++++... .
T Consensus 325 l~lL~~l~~-~~n~~~I-----l~eL~~~l~~-~~d~~~~~~~i~~I~~la~~~~~~~~~~-----v~~l~~ll~~~--~ 390 (526)
T PF01602_consen 325 LDLLYKLAN-ESNVKEI-----LDELLKYLSE-LSDPDFRRELIKAIGDLAEKFPPDAEWY-----VDTLLKLLEIS--G 390 (526)
T ss_dssp HHHHHHH---HHHHHHH-----HHHHHHHHHH-C--HHHHHHHHHHHHHHHHHHGSSHHHH-----HHHHHHHHHCT--G
T ss_pred HHHHhhccc-ccchhhH-----HHHHHHHHHh-ccchhhhhhHHHHHHHHHhccCchHHHH-----HHHHHHhhhhc--c
Confidence 999999874 4444443 5567777731 3467799999999999987665544443 35566666532 2
Q ss_pred HHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 459 QQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 459 ~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
..+..++...++++..++|+.+...+.
T Consensus 391 ~~~~~~~~~~i~~ll~~~~~~~~~~l~ 417 (526)
T PF01602_consen 391 DYVSNEIINVIRDLLSNNPELREKILK 417 (526)
T ss_dssp GGCHCHHHHHHHHHHHHSTTTHHHHHH
T ss_pred ccccchHHHHHHHHhhcChhhhHHHHH
Confidence 334445555666666666665554443
No 41
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.37 E-value=0.00027 Score=72.41 Aligned_cols=279 Identities=15% Similarity=0.129 Sum_probs=187.7
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh-------cCChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-------GGGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~-------~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l 246 (508)
.+-.++.|++... ..+....++.-+.-++..+..+..+.. .-.-+..+.+|.+ .+.-+.+.+.++++.+
T Consensus 66 ~v~~fi~LlS~~~--kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r--~d~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 66 YVKTFINLLSHID--KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR--QDTFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHhchhh--hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc--CChHHHHHHHHHHHHH
Confidence 4677888887652 334555667777777766666655432 1125678888875 3666777688888776
Q ss_pred hcC-Chh-hHHH-HHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH-
Q 010533 247 ATG-NEV-VKES-YMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL- 321 (508)
Q Consensus 247 ~~~-~e~-nr~~-i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL- 321 (508)
+.- +.. .... -+. ...|..+|++ .+++...-+.+.|..|.+.+..|. .++...|+..++..+
T Consensus 142 a~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~----------~~v~adg~~~l~~~l~ 208 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY----------AFVIADGVSLLIRILA 208 (442)
T ss_pred HHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh----------eeeecCcchhhHHHHh
Confidence 432 111 1111 111 2345566666 344666667778998988887665 355668888888888
Q ss_pred hcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-------hhHHH
Q 010533 322 HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-------SNKSA 394 (508)
Q Consensus 322 ~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-------~~k~~ 394 (508)
.+..+-.++...+.++|-|+.++..++.+-..+-|+.|.++++....+ .|.+-++++++||.... +....
T Consensus 209 s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE---KV~Rivlai~~Nll~k~~~~~~~k~~~~~ 285 (442)
T KOG2759|consen 209 STKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE---KVTRIVLAIFRNLLDKGPDRETKKDIASQ 285 (442)
T ss_pred ccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 443356788999999999999999998887778899999999976543 89999999999997533 33345
Q ss_pred HHhCCcHHHHHHHHh-ccCCCHH---------------------------------------------------------
Q 010533 395 IIENGGMDKLIVVSA-RFSDDAS--------------------------------------------------------- 416 (508)
Q Consensus 395 Iv~~Ggl~~Lv~lL~-~~~~~~~--------------------------------------------------------- 416 (508)
++..+ ++..++.|. +.-+++.
T Consensus 286 mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnenn 364 (442)
T KOG2759|consen 286 MVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENN 364 (442)
T ss_pred HHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhcc
Confidence 55544 444455443 2222221
Q ss_pred ------------------HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 417 ------------------VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 417 ------------------v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
+.--||.=|.......|+-+..+-..||=+.++++|. | .++.|+.+|..|+.-|-.+
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln-h-~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN-H-EDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc-C-CCchHHHHHHHHHHHHHhh
Confidence 1122555556666667888888888899999999994 5 5689999999988776554
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2e-05 Score=79.29 Aligned_cols=151 Identities=13% Similarity=0.213 Sum_probs=128.5
Q ss_pred ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHH
Q 010533 326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKL 404 (508)
Q Consensus 326 d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~L 404 (508)
+.+-+..+..-|..+..+=+|...++..||..+++..+.+. +..+.+.|+++|+.++. ||.....+++.||++.|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~----~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS----DAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC----cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 44555666666777777778889999999999999977753 34899999999999985 78999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533 405 IVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF 481 (508)
Q Consensus 405 v~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~ 481 (508)
+..+. +.++-.++.+|+.++++|-.+++.-...+...+|...|..+|+....+...|+.+...|..+.........
T Consensus 172 l~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 172 LKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 99998 45567888999999999998888889999999999999999998767789999999999999875554443
No 43
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.6e-05 Score=76.16 Aligned_cols=183 Identities=21% Similarity=0.183 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~ 268 (508)
+.+-...|+..|..++++-.+-.+++..||..+++..|. ..+.++.+.|+++|+.++..++...+.+++.|+.+.|+.
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 556677789999988876666689999999999999886 468999999999999999999999999999999999999
Q ss_pred HHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcChhh
Q 010533 269 ILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEI 346 (508)
Q Consensus 269 lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~~e~ 346 (508)
.|.+.++ .+...|..|+++|.++... -...+...+|...|..+|++.. +...+..+...+.+|...+..
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~---------g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKP---------GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcH---------HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 9997554 6667788889988876532 1234557788999999999864 456777888888888874433
Q ss_pred HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 347 ~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
...++..-+.+..+..+....+ .++.+.++.++-.+
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~---~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLD---FEVNEAALTALLSL 280 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccc---hhhhHHHHHHHHHH
Confidence 3334443344443333333222 26666666665544
No 44
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=2.6e-06 Score=74.11 Aligned_cols=110 Identities=15% Similarity=0.044 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 010533 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ 450 (508)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~ 450 (508)
+.+..+....-|+|.|.+|-|...+.+...++.+++.|. ..+..+.+.+.+.|+|+|. ++.|.+.|++++|+|.++.
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~ 106 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIF 106 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEe
Confidence 458888999999999999999999999999999999998 6789999999999999996 8999999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 451 AMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 451 ~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
.+.+++ ..+...|..++..|.-.+...+..++.
T Consensus 107 ~lssp~--e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 107 VLSSPP--EITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred ecCCCh--HHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 997654 456677888998888766666655544
No 45
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00046 Score=70.96 Aligned_cols=263 Identities=14% Similarity=0.173 Sum_probs=181.9
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-----C----hhhHHHHHHcCcHHHH
Q 010533 196 CLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG-----N----EVVKESYMELKIDELI 266 (508)
Q Consensus 196 al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~-----~----e~nr~~i~~~G~i~~L 266 (508)
.++-+..++..+.-.+.+++-.|++.++++|. +++.++...++..+..+.-. + +.--+.+++.+++++|
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLg--HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLG--HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhc--CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 45556666554444578899999999999997 56888999999999888522 1 1345577888999999
Q ss_pred HHHHhcCChHH------HHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHHHHH
Q 010533 267 LEILSRQRNDS------IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIALK 338 (508)
Q Consensus 267 v~lL~~~~~~~------~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~aL~ 338 (508)
+.-+.+-+.++ +.++...+-||..-+ .+++..+++.|.+.-|+.-+.... ++.. ..+...|+
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r---------~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk-~YasEiLa 251 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVR---------PAICTEIVEQGLLSWLLKRLKGKAAFDANK-QYASEILA 251 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhcc---------HHHHHHHHHhhHHHHHHHHHhcccCcchhH-HHHHHHHH
Confidence 99998754422 334455566665433 246677888787777777555432 3322 23333343
Q ss_pred Hh-hcChhhHhHHhhcCCHHHHHHHHhccCCC----C-cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 339 AV-AVNDEICKSVAENGGIDALLRCIDDSGLQ----G-NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 339 ~L-a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~----~-~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
-+ ...+++...+....|+..+++-+.-+..+ . ..+..++.+.+|..+-..++|+..++...|++...-.|+ +
T Consensus 252 illq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr-~- 329 (536)
T KOG2734|consen 252 ILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR-E- 329 (536)
T ss_pred HHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH-H-
Confidence 33 34567888888999999999876532111 1 247888899999888889999999999999988777776 2
Q ss_pred CCHHHHHHHHHHHHHHhcCCh--hhHHHHHhcCcHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhh
Q 010533 413 DDASVLQEVMSIITVLSLRSP--ENAARAMEAGSGDLAIQAMLKFP--------NAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~--~~~~~i~~~G~i~~Lv~~L~~h~--------~~~~vq~~A~~aL~nL~ 473 (508)
....+..+..+|-.+..+.+ .+|..+++.+|...+.-+.-+-| ....+.+..|..|..+-
T Consensus 330 -Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 330 -KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred -HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 24456788999999888777 89999999999888877532211 22345556676665554
No 46
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=1.8e-06 Score=60.22 Aligned_cols=40 Identities=35% Similarity=0.457 Sum_probs=37.8
Q ss_pred CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 388 ~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+++++..|++.|++|+|+++|. +.++.++++|+|+|.|||
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999 789999999999999998
No 47
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.24 E-value=7.4e-06 Score=71.30 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=118.6
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (508)
+.+..||+-....++.+.++.+..-|.|.|-++.|-..+.+...++..+..|... |..+++-+.+.|.|++-.+.|
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~----ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ----NELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc----cHHHHHHhHHHHHhhccChHH
Confidence 5677788777776677788888888999999999999999999999999999864 337999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533 392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n 471 (508)
+..|++++|+|.++..+. +......-.++.+|..|+..+..-+..+. -|.++++|..+. ..++.-.||
T Consensus 92 ~~~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v~r~~------~s~s~~~rn 159 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTVQRWR------ESKSHDERN 159 (173)
T ss_pred HHHHHHhcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHHHHHH------HHhhHHHHH
Confidence 999999999999999998 55577888999999999987766666664 466777776542 223344666
Q ss_pred hhh
Q 010533 472 LVA 474 (508)
Q Consensus 472 L~~ 474 (508)
|++
T Consensus 160 La~ 162 (173)
T KOG4646|consen 160 LAS 162 (173)
T ss_pred HHH
Confidence 654
No 48
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.23 E-value=0.00023 Score=72.85 Aligned_cols=225 Identities=14% Similarity=0.178 Sum_probs=156.5
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh
Q 010533 196 CLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (508)
Q Consensus 196 al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~ 275 (508)
|...|..++.-++-|..++.+.|+..++..|.+...+-.+|-+.+-+++-+ +-++...+.+-..+.|+.|+++++....
T Consensus 177 ~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL-tFn~~~ae~~~~~~li~~L~~Ivk~~~K 255 (442)
T KOG2759|consen 177 AARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL-TFNPHAAEKLKRFDLIQDLSDIVKESTK 255 (442)
T ss_pred HHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh-hcCHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 334444455555667899999999999999965567788998888888887 4566666666677999999999997644
Q ss_pred -HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHHH-------HHHhhcCh-
Q 010533 276 -DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASIA-------LKAVAVND- 344 (508)
Q Consensus 276 -~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~a-------L~~La~~~- 344 (508)
.+.+-.+++++|++.-.+.+-.. .+++..++..+. +.-++.|.... |+++..++-.. ...|+..|
T Consensus 256 EKV~Rivlai~~Nll~k~~~~~~~---k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDe 331 (442)
T KOG2759|consen 256 EKVTRIVLAIFRNLLDKGPDRETK---KDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDE 331 (442)
T ss_pred HHHHHHHHHHHHHHhccCchhhHH---HHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence 68888999999998433222211 134445555454 44455555433 55444332221 12233333
Q ss_pred -----------------------hhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhC
Q 010533 345 -----------------------EICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIEN 398 (508)
Q Consensus 345 -----------------------e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~ 398 (508)
||..++-+.. .++.|+.+|+.+.| +-+..-||.=|+... ..|+++..|.+.
T Consensus 332 Y~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D---p~iL~VAc~DIge~Vr~yP~gk~vv~k~ 408 (442)
T KOG2759|consen 332 YKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND---PIILCVACHDIGEYVRHYPEGKAVVEKY 408 (442)
T ss_pred HHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC---CceeehhhhhHHHHHHhCchHhHHHHHh
Confidence 3333344332 36788999987543 367778888888876 479999999999
Q ss_pred CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
||=+.++++|+ .+++.|+-+|+.|+-.|..
T Consensus 409 ggKe~vM~Lln--h~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 409 GGKERVMNLLN--HEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred chHHHHHHHhc--CCCchHHHHHHHHHHHHHh
Confidence 99999999998 6799999999999887754
No 49
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.21 E-value=2.5e-06 Score=59.44 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=37.3
Q ss_pred ChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 432 SPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 432 ~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+|++++.+++.|+++.|+++|+ +.+..++++|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhC
Confidence 5889999999999999999996 4678999999999999973
No 50
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.18 E-value=0.0005 Score=74.82 Aligned_cols=346 Identities=16% Similarity=0.182 Sum_probs=211.1
Q ss_pred HHHHHhhcCCChhHHHHHHHHH---HhhccccCCCcc----ccCCCCCCC---------------CCC-hHHHHHHHHHH
Q 010533 73 VKENMEDLGMEPTEALQDAIQT---LSLQGVDLSGIV----KCVPGESSL---------------KDN-PLIQSLERLKQ 129 (508)
Q Consensus 73 v~eni~~~~m~p~eal~~aI~q---~~~qgvdLs~i~----~~~~~~~~~---------------~~~-~v~~~l~~L~~ 129 (508)
+++-.+.+. ...+-.++++.+ +..+|.|.+... +-.... +. ..+ .+.-++..+..
T Consensus 9 l~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~k 86 (526)
T PF01602_consen 9 LAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDPELLILIINSLQK 86 (526)
T ss_dssp HHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 344555555 344455666666 377899876432 222211 10 111 12235556666
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc
Q 010533 130 LDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS 209 (508)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~ 209 (508)
-+.+. +.....-||+.|..++. ++.. + -.+|.+..+|.+ +++-++..|+-++..+....
T Consensus 87 dl~~~-------n~~~~~lAL~~l~~i~~----~~~~----~-~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~-- 145 (526)
T PF01602_consen 87 DLNSP-------NPYIRGLALRTLSNIRT----PEMA----E-PLIPDVIKLLSD---PSPYVRKKAALALLKIYRKD-- 145 (526)
T ss_dssp HHCSS-------SHHHHHHHHHHHHHH-S----HHHH----H-HHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHC--
T ss_pred hhcCC-------CHHHHHHHHhhhhhhcc----cchh----h-HHHHHHHHHhcC---CchHHHHHHHHHHHHHhccC--
Confidence 55554 56666777777777763 3321 1 247788888887 46788988988888887543
Q ss_pred hhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 010533 210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (508)
Q Consensus 210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 289 (508)
++.+..+-++.+.++|.. .++.++..|+.++..+ ..++..-..+. ...+..|..++...++-.+..+...|..++
T Consensus 146 -p~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 146 -PDLVEDELIPKLKQLLSD--KDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp -HCCHHGGHHHHHHHHTTH--SSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred -HHHHHHHHHHHHhhhccC--CcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 222222257888888853 4799999999999988 22222110111 123344444444455555666777777776
Q ss_pred CCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ 369 (508)
Q Consensus 290 ~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~ 369 (508)
..+.. ... ....++.+..+|++. ++.++..++.++..+...++.. ..+++.|+.+|.+.
T Consensus 221 ~~~~~---------~~~---~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~s~--- 279 (526)
T PF01602_consen 221 PMEPE---------DAD---KNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLSSS--- 279 (526)
T ss_dssp SSSHH---------HHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHTSS---
T ss_pred cCChh---------hhh---HHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhhcc---
Confidence 54321 110 024578888888853 5678888889988888776622 23568899999842
Q ss_pred CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 010533 370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI 449 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv 449 (508)
+..+.-.++..|..++... .. .+. .....+..+. +.++..++..++..|..++ +++|...+ ++.|.
T Consensus 280 -~~nvr~~~L~~L~~l~~~~--~~-~v~--~~~~~~~~l~-~~~d~~Ir~~~l~lL~~l~--~~~n~~~I-----l~eL~ 345 (526)
T PF01602_consen 280 -DPNVRYIALDSLSQLAQSN--PP-AVF--NQSLILFFLL-YDDDPSIRKKALDLLYKLA--NESNVKEI-----LDELL 345 (526)
T ss_dssp -SHHHHHHHHHHHHHHCCHC--HH-HHG--THHHHHHHHH-CSSSHHHHHHHHHHHHHH----HHHHHHH-----HHHHH
T ss_pred -cchhehhHHHHHHHhhccc--ch-hhh--hhhhhhheec-CCCChhHHHHHHHHHhhcc--cccchhhH-----HHHHH
Confidence 2478899999999998654 22 223 3444445554 3678999999999999998 67887775 45566
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533 450 QAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC 482 (508)
Q Consensus 450 ~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~ 482 (508)
..+... .+..+++.++..|+.++.+.+.....
T Consensus 346 ~~l~~~-~d~~~~~~~i~~I~~la~~~~~~~~~ 377 (526)
T PF01602_consen 346 KYLSEL-SDPDFRRELIKAIGDLAEKFPPDAEW 377 (526)
T ss_dssp HHHHHC---HHHHHHHHHHHHHHHHHHGSSHHH
T ss_pred HHHHhc-cchhhhhhHHHHHHHHHhccCchHHH
Confidence 667432 35679999999999999776554433
No 51
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.0013 Score=67.69 Aligned_cols=264 Identities=13% Similarity=0.106 Sum_probs=181.5
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC---cc-------hhHHHhc
Q 010533 147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV---QS-------TETFRTG 216 (508)
Q Consensus 147 ~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~---~~-------~~~i~~~ 216 (508)
-..++++.-++. -|.---.+++.++|+.|+.||.+. +.++....+..|-.|++.+ ++ -..+++.
T Consensus 102 hd~IQ~mhvlAt---~PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg 175 (536)
T KOG2734|consen 102 HDIIQEMHVLAT---MPDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG 175 (536)
T ss_pred HHHHHHHHhhhc---ChHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc
Confidence 345667767765 455545889999999999999984 6788887888887777532 11 1355677
Q ss_pred CChHHHHHHHhcCCCCH----HHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--HHHHHHHHHHHHhcC
Q 010533 217 GGPKLLVNILIDGNEDP----EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLT 290 (508)
Q Consensus 217 ggi~~Lv~lL~~~~~~~----~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~ 290 (508)
+.++.||.-+.+-.++. .=...++.++-|+..-.+.....+++.|.+.-|+.-+..... .-...|...|.-+..
T Consensus 176 ~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq 255 (536)
T KOG2734|consen 176 QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ 255 (536)
T ss_pred cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence 88899998887654322 233556677777777677777888888877776665543221 334445555554443
Q ss_pred CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--C------hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHH
Q 010533 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--S------SPSLISASIALKAVAVNDEICKSVAENGGIDALLRC 362 (508)
Q Consensus 291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d------~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~l 362 (508)
+.+ ++.+.+....|+..|+.-+.-+. | .+..++...+|+.+....+++..+....|+....-+
T Consensus 256 ~s~---------e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lm 326 (536)
T KOG2734|consen 256 NSD---------ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLM 326 (536)
T ss_pred cCc---------hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHH
Confidence 322 24445557789999988776432 2 256789999999988999999999999999887766
Q ss_pred HhccCCCCcHHHHHHHHHHHHHhh-CCc--hhHHHHHhCCcHHHHHHHHhccC--------CCHHHHHHHHHHHHHHhc
Q 010533 363 IDDSGLQGNKTVARICCSLLSKLA-GSD--SNKSAIIENGGMDKLIVVSARFS--------DDASVLQEVMSIITVLSL 430 (508)
Q Consensus 363 L~~~~~~~~~~v~~~al~aL~~La-~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~--------~~~~v~e~a~~aL~~La~ 430 (508)
|+. + +...-.++.+|-... +.+ ++...+++.+|+..+..+.-+-+ .....-|+.|+.|+.|-.
T Consensus 327 lr~--K---k~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 327 LRE--K---KVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHH--H---HHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 664 1 145567788888765 444 67788999999998888654211 224577889999988753
No 52
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0011 Score=72.16 Aligned_cols=307 Identities=12% Similarity=0.102 Sum_probs=186.9
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcC----ChHH
Q 010533 147 MGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG----GPKL 221 (508)
Q Consensus 147 ~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~g----gi~~ 221 (508)
...|..|.-+|.. -+|+ ....+ +.++-.++.=..+.. .+..+...|+++|..-+.-. +..|-.++ ..+.
T Consensus 148 ~~slealGyice~-i~pe--vl~~~sN~iLtaIv~gmrk~e-~s~~vRLaa~~aL~nsLef~--~~nF~~E~ern~iMqv 221 (859)
T KOG1241|consen 148 ESSLEALGYICED-IDPE--VLEQQSNDILTAIVQGMRKEE-TSAAVRLAALNALYNSLEFT--KANFNNEMERNYIMQV 221 (859)
T ss_pred HHHHHHHHHHHcc-CCHH--HHHHHHhHHHHHHHhhccccC-CchhHHHHHHHHHHHHHHHH--HHhhccHhhhceeeee
Confidence 5577888888874 2343 44444 333444444333322 46788888888887654211 00111111 1233
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-cchhhhh-
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-DDQVVAS- 299 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d-d~r~~~~- 299 (508)
+++.= .+++.+++..++.+|-.+.+-+-+.-+..|+......-+..+++.++++.-.+...=+++|..+ |.-.+++
T Consensus 222 vcEat--q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e 299 (859)
T KOG1241|consen 222 VCEAT--QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGE 299 (859)
T ss_pred eeecc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2578999999999999987766556666677667777888899877766555655555555211 1111111
Q ss_pred --------hcchHHHHHHhcCCHHHHHHHHhcCC-Ch-----hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc
Q 010533 300 --------QVYGYARRFAKIGIARALVHSLHAGL-SS-----PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (508)
Q Consensus 300 --------~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~-----~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~ 365 (508)
.++-+++.-. .+.+|.|+++|.... |. +.-..+..+|.-++. .+....++.++.++..
T Consensus 300 ~~d~~~~p~~~~fa~~a~-~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee 371 (859)
T KOG1241|consen 300 AVDQGLPPSSKYFARQAL-QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEE 371 (859)
T ss_pred HhhcCCCchhhHHHHHHH-hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHH
Confidence 1122233222 267899999998743 11 222333333322222 2223356677777776
Q ss_pred cCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcC
Q 010533 366 SGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA-RAMEAG 443 (508)
Q Consensus 366 ~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~-~i~~~G 443 (508)
+-..+|..=.+.+.-+++.+- |.+..+..=+..+++|.++.+|. .++-.++..+.|+|..++...|+.+. .....+
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~ 449 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQS 449 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence 655666677778888888765 55555544445589999999998 55677889999999999977775433 233345
Q ss_pred cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
.+..+++-|.. .+.|-.++|||+-+|+.
T Consensus 450 ~l~~l~~gL~D---ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 450 KLSALLEGLND---EPRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHHHHHhhh---CchHHHHHHHHHHHHHH
Confidence 56666666654 46778899999999983
No 53
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.04 E-value=9.3e-05 Score=76.32 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=130.6
Q ss_pred HHHHHHcCcHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533 254 KESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (508)
Q Consensus 254 r~~i~~~G~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~ 331 (508)
++.|...|++..|+.++..++. .+...+...|-.+... +|...++.-| +..++.+.+....++...
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-----------eN~d~va~~~-~~~Il~lAK~~e~~e~aR 240 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-----------ENRDRVARIG-LGVILNLAKEREPVELAR 240 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-----------hhhhHHhhcc-chhhhhhhhhcCcHHHHH
Confidence 4566778999999999998765 4566677777765532 2334455444 667777766544567788
Q ss_pred HHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHHHHhCCcHHHHHHHH
Q 010533 332 SASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVS 408 (508)
Q Consensus 332 ~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~Ggl~~Lv~lL 408 (508)
.+++.|.+|-. .++.|+++++.||++.++-..+.. ++.+++.|.-+|+|++ +..+.+..|++..+.+.|.-+-
T Consensus 241 ~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA 316 (832)
T KOG3678|consen 241 SVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT----DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA 316 (832)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh
Confidence 88889999876 778999999999999988766653 3589999999999988 4668899999998888888876
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 010533 409 ARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS 444 (508)
Q Consensus 409 ~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~ 444 (508)
. +.+.-.+-+||-+++.|+. +.+.-..+...|-
T Consensus 317 ~--skDel~R~~AClAV~vlat-~KE~E~~VrkS~T 349 (832)
T KOG3678|consen 317 F--SKDELLRLHACLAVAVLAT-NKEVEREVRKSGT 349 (832)
T ss_pred c--chHHHHHHHHHHHHhhhhh-hhhhhHHHhhccc
Confidence 6 6677888999999999985 5555555544443
No 54
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.95 E-value=3.2e-05 Score=64.88 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV 486 (508)
Q Consensus 418 ~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~ 486 (508)
+...+.+|+|||.+++.++..+.+.||++.++........+|-+++.|.|+||||+..|+++++.+.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 566789999999999999999999999999999987777889999999999999999999998877643
No 55
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.89 E-value=0.0041 Score=67.06 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~ 310 (508)
.+......||.++.+.+..-..-|..+-...++.+|+.+|..+...+...+.++|.||... || .+...+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme------fs---~~kskfl~ 459 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME------FS---NLKSKFLR 459 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh------cc---cHHHHHHH
Confidence 4566777777776665432222333344567899999999776667888899999999853 22 24456778
Q ss_pred cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh--HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-C
Q 010533 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI--CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-G 387 (508)
Q Consensus 311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~--~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~ 387 (508)
.|||+.|...+.+. +.+++....|+|+++..+.+. +......=+...++.+..+ +++.|+++|+.+|+||. +
T Consensus 460 ~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 460 NNGIDILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHhhcC
Confidence 99999999998875 678899999999999986544 3333333334555655554 34689999999999995 4
Q ss_pred CchhHHHHHhCCc--HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHH------HHHcCCCc
Q 010533 388 SDSNKSAIIENGG--MDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQ------AMLKFPNA 458 (508)
Q Consensus 388 ~~~~k~~Iv~~Gg--l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~------~L~~h~~~ 458 (508)
..+-.+-+++.-+ +..+...++ ......+..+...-+.++..... ++..++ .|..+.++- -++.-+..
T Consensus 535 ~~~svdfll~~~~~~ld~i~l~lk-~a~~~pi~ie~~~~~~~l~~~~d~~~~~am--~~~fk~lvl~~e~~~n~~q~s~~ 611 (678)
T KOG1293|consen 535 SRKSVDFLLEKFKDVLDKIDLQLK-IAIGSPILIEFLAKKMRLLNPLDTQQKKAM--EGIFKILVLLAEVNENKKQLSIE 611 (678)
T ss_pred cHHHHHHHHHhhhHHHHHHHHHHh-hccCCceehhhHHHHHHhccchhHHHHHHH--HHHHHHHHHHHHHHHHHHhhccH
Confidence 4455666665433 333333443 33333344444554444443332 223322 233333332 22333334
Q ss_pred HHHHHHHHHHHHHhhh
Q 010533 459 QQLQRSSCFMIRNLVA 474 (508)
Q Consensus 459 ~~vq~~A~~aL~nL~~ 474 (508)
....-++.|-+.|+..
T Consensus 612 ~qls~~~~~~iinl~~ 627 (678)
T KOG1293|consen 612 QQLSLNIMSEIINLTT 627 (678)
T ss_pred HHHHHHHHHHHHhccC
Confidence 4555678899999875
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=97.89 E-value=0.021 Score=62.49 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=104.2
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccC----CCHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSCL 197 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~----~~~~~~~~al 197 (508)
.+++....+.+. +.+....+|--+.++|+.. .+...+..+.++=+.+.|-+||++... +....+.-++
T Consensus 6 ~l~~c~~lL~~~-------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 6 SLEKCLSLLKSA-------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred HHHHHHHHhccC-------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 456666666554 6677888899999999872 122334456677778999999987542 2346677789
Q ss_pred HHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC
Q 010533 198 KTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ 273 (508)
Q Consensus 198 ~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~ 273 (508)
..|+.++.+.+....---.+-||.|++++...+ +.++...++.+|..++ .++..++.+++.|+++.|.+++.++
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~ 152 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ 152 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC
Confidence 999999886432211111346999999998643 3688999999999997 6788999999999999999999874
No 57
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.88 E-value=0.0011 Score=68.56 Aligned_cols=181 Identities=13% Similarity=0.175 Sum_probs=133.8
Q ss_pred hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhc
Q 010533 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLL 289 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~ 289 (508)
+.++..||...|++++....-+..+...+.++|-.+. ..+|++.++..| +..++.+-+.... +..+..+..|.+|-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 5778889999999999865555667888999998874 357999998777 4555555443322 66777777887774
Q ss_pred CCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccC
Q 010533 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSG 367 (508)
Q Consensus 290 ~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~ 367 (508)
.++.+.+..+++.|+++.++--.+. +++.++..++.+|+|++. ..+..+++++.-.-+-|.-+-.+ .
T Consensus 251 ---------KHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s-k 319 (832)
T KOG3678|consen 251 ---------KHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS-K 319 (832)
T ss_pred ---------hhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc-h
Confidence 3456778889999999998766554 378999999999999886 45667888887776666644332 2
Q ss_pred CCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcH---HHHHHHH
Q 010533 368 LQGNKTVARICCSLLSKLAGSDSNKSAIIENGGM---DKLIVVS 408 (508)
Q Consensus 368 ~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl---~~Lv~lL 408 (508)
| .-+.-.||-+...|+.+.+.-..+.+.|-+ ++++..+
T Consensus 320 D---el~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~ 360 (832)
T KOG3678|consen 320 D---ELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASL 360 (832)
T ss_pred H---HHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc
Confidence 2 256678999999999999988888888764 4444444
No 58
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.84 E-value=0.0024 Score=68.19 Aligned_cols=265 Identities=12% Similarity=0.100 Sum_probs=162.1
Q ss_pred HHHHhhcCCcchhHHHhcCChHHHHHHH--------hcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHH
Q 010533 199 TMALLVHDVQSTETFRTGGGPKLLVNIL--------IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL 270 (508)
Q Consensus 199 aLa~l~~~~~~~~~i~~~ggi~~Lv~lL--------~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL 270 (508)
+|-.+..+...-..+....|+..|+++= .....+..+...|+++|.|+...++..|+.+++.|+.+.+++.|
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L 83 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL 83 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence 3333333333334444444555554443 12346789999999999999999999999999999999999999
Q ss_pred hcC-----ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC----------------Chh
Q 010533 271 SRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL----------------SSP 328 (508)
Q Consensus 271 ~~~-----~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~----------------d~~ 328 (508)
+.+ +.++.--.++.|+-++.... +..+.++ +.+++..|+..|..+- +..
T Consensus 84 k~~~~~~~~~d~~Fl~~RLLFLlTa~~~---------~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~ 154 (446)
T PF10165_consen 84 KNYSDSSQPSDVEFLDSRLLFLLTALRP---------DDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEE 154 (446)
T ss_pred HcccccCCChhHHHHHHHHHHHHhcCCh---------hHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHH
Confidence 986 34666678888887775331 1233455 6688888887766421 123
Q ss_pred HHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhhCCchhHHHH--------
Q 010533 329 SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS-----GLQGNKTVARICCSLLSKLAGSDSNKSAI-------- 395 (508)
Q Consensus 329 ~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~-----~~~~~~~v~~~al~aL~~La~~~~~k~~I-------- 395 (508)
.+.+++.+++|+.........-.+.+.++.|+.++... .+.+.......+..+|.++- ......+
T Consensus 155 ~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp--l~~~~~l~~~~~~~~ 232 (446)
T PF10165_consen 155 ALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP--LECLDSLLSPKFQQS 232 (446)
T ss_pred HHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC--hHHHhhhhcccCCcc
Confidence 46778888888876322211112344566666665543 11222356677777777762 1111111
Q ss_pred ------HhCCcHHHHHHHHhc----cCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhc----------------CcHHH
Q 010533 396 ------IENGGMDKLIVVSAR----FSDD--ASVLQEVMSIITVLSLRSPENAARAMEA----------------GSGDL 447 (508)
Q Consensus 396 ------v~~Ggl~~Lv~lL~~----~~~~--~~v~e~a~~aL~~La~~~~~~~~~i~~~----------------G~i~~ 447 (508)
.....+..|+.+|.+ +... .....-.+.+|..++..+...++.+... ..-..
T Consensus 233 ~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~r 312 (446)
T PF10165_consen 233 SLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSR 312 (446)
T ss_pred cccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHH
Confidence 112245677777753 2211 2345566778888886555544444421 23457
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533 448 AIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 448 Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
|+++| +++. ..++..++..|..|+..+
T Consensus 313 LlrLm-t~~~-~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 313 LLRLM-TSPD-PQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHh-CCCC-chHHHHHHHHHHHHHhhh
Confidence 88888 4665 788888888888887654
No 59
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.79 E-value=0.00011 Score=61.68 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 010533 375 ARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA 442 (508)
Q Consensus 375 ~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~ 442 (508)
....+.+|++|+. ++.+++.|.+.||+|.+++.-.--..+|-++|+|.++|.+||.+|++|++.|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4577889999985 7899999999999999999876445579999999999999999999999887654
No 60
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.024 Score=64.03 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHhCCCCChhhHH----HHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 010533 144 NEMMGLFDKLIELCGGNEGSVNAA----VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP 219 (508)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~----~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi 219 (508)
+.+.-+|.+|+++.+. +|.-.. ...--|-.|.+..+|... .+..++..|++.+..++...+=-..+...|.+
T Consensus 1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~--~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCR--KHPKLQILALQVILLATANKECVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHc--CCchHHHHHHHHHHHHhcccHHHHHHHhhhHH
Confidence 4567789999999886 553221 222246788888888776 46678888999998877654333667788888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCc--chh
Q 010533 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDD--DQV 296 (508)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd--~r~ 296 (508)
..|+.+|.+ -+...+.++.+|..+++..+-.| .-++.|++..+..++-..+. .....++..|..|..+.- +|+
T Consensus 1816 ~~LL~lLHS---~PS~R~~vL~vLYAL~S~~~i~k-eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1816 TTLLTLLHS---QPSMRARVLDVLYALSSNGQIGK-EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred HHHHHHHhc---ChHHHHHHHHHHHHHhcCcHHHH-HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence 888888854 46778888889988876554444 45677888888888876544 333445666666664431 122
Q ss_pred h-------------------------------------------------------------------------h-h--h
Q 010533 297 V-------------------------------------------------------------------------A-S--Q 300 (508)
Q Consensus 297 ~-------------------------------------------------------------------------~-~--~ 300 (508)
. + | .
T Consensus 1892 ~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1892 TITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred eeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence 0 0 0 0
Q ss_pred -------cchHHHHHHh-------------cCCHHHHHHHHhcCC-ChhHHHHHHHHHHH-hhcChhhHhHHhhcCCHHH
Q 010533 301 -------VYGYARRFAK-------------IGIARALVHSLHAGL-SSPSLISASIALKA-VAVNDEICKSVAENGGIDA 358 (508)
Q Consensus 301 -------a~~~~~~i~~-------------~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~-La~~~e~~~~i~e~Ggi~~ 358 (508)
..-+.|.++. .|.++.+.++|.... ....+.-...++-. +...+.....+-..|-+|.
T Consensus 1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK 2051 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPK 2051 (2235)
T ss_pred hccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHH
Confidence 0011222221 123455556665422 11222222333333 3345666677888899999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHH
Q 010533 359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAA 437 (508)
Q Consensus 359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~ 437 (508)
++..|...+. .+=..|+.+|..|+.+.-+.+++.....+..++..|.+ .+....-||-+|-.+..++. +..+
T Consensus 2052 ~~~Am~~~n~----s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK---~~~~~GLA~EalkR~~~r~~~eLVA 2124 (2235)
T KOG1789|consen 2052 FCTAMCLQNT----SAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKK---QPSLMGLAAEALKRLMKRNTGELVA 2124 (2235)
T ss_pred HHHHHHhcCC----cCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHh---cchHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999975432 45579999999999999999999988888889999873 34455678888888876654 4466
Q ss_pred HHHhcCcHHHHHHHHHc
Q 010533 438 RAMEAGSGDLAIQAMLK 454 (508)
Q Consensus 438 ~i~~~G~i~~Lv~~L~~ 454 (508)
+.+..|.+|.|+++|..
T Consensus 2125 Q~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2125 QMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHhccCcHHHHHHHhcc
Confidence 67788999999999853
No 61
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.79 E-value=0.0037 Score=65.11 Aligned_cols=299 Identities=13% Similarity=0.079 Sum_probs=192.2
Q ss_pred HHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCC
Q 010533 152 KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE 231 (508)
Q Consensus 152 ~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~ 231 (508)
.|-++.++ .+.-+....-.-..+.+..++-+ ++.++...++..+-.+..+...-..+.+.+.--.++..|.+...
T Consensus 6 ~Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~---~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 6 DLVDLLKR--HPTLKYDLVLSFFGERIQCMLLS---DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHHHHHHh--CchhhhhhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC
Confidence 34444444 44444444433345555543333 24889999999999998887666777888888889999987766
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~ 311 (508)
+..-.++|++.++.+...... .+ .+-.|++..|+.+....++.....+..+|.-|+..+ -+.++++
T Consensus 81 ~~~ER~QALkliR~~l~~~~~-~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~------------P~lv~~~ 146 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKG-PK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN------------PELVAEC 146 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCC-cc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC------------HHHHHHc
Confidence 777788999999987644221 11 134578889999998876666666778888887644 1345589
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC---CCCcH--HHHHHHHHHHHHh-
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG---LQGNK--TVARICCSLLSKL- 385 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~---~~~~~--~v~~~al~aL~~L- 385 (508)
||+..|++.+-+++ .++.+.++.++-++...+...+.+...--++.++.-+.+.. ...+. +....+..++..+
T Consensus 147 gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~L 225 (371)
T PF14664_consen 147 GGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLL 225 (371)
T ss_pred CCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 99999999998854 33667888899888888877776665445677777766541 11111 2334444444333
Q ss_pred hCCchhHH-HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-------------------CCh------------
Q 010533 386 AGSDSNKS-AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-------------------RSP------------ 433 (508)
Q Consensus 386 a~~~~~k~-~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-------------------~~~------------ 433 (508)
-+.+..-. ..-+..|+..|++.|. .+++.+++.....+..+-. +..
T Consensus 226 rsW~GLl~l~~~~~~~lksLv~~L~--~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e 303 (371)
T PF14664_consen 226 RSWPGLLYLSMNDFRGLKSLVDSLR--LPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAE 303 (371)
T ss_pred hcCCceeeeecCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccc
Confidence 22221110 0111246778888887 5667787777776665320 000
Q ss_pred -------------h--------hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533 434 -------------E--------NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 434 -------------~--------~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
. ....++++|.++.|+++.... .+..+.+.|...|.++-
T Consensus 304 ~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~-~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 304 AKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESS-EDSSLSRKATLLLGELL 363 (371)
T ss_pred cccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcC-CCchHHHHHHHHHHHHH
Confidence 0 012456788899999988754 35677888888887653
No 62
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.012 Score=58.33 Aligned_cols=278 Identities=10% Similarity=0.100 Sum_probs=151.5
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh--cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (508)
Q Consensus 177 ~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr 254 (508)
-|+.+|.+. ++.++..|...+..++.. .. ..+.. ..-++.+.+++.... + .+.|+.++.|++ ..+..|
T Consensus 7 elv~ll~~~---sP~v~~~AV~~l~~lt~~-~~-~~~~~~~~~~lk~l~qL~~~~~--~--~~~a~~alVnls-q~~~l~ 76 (353)
T KOG2973|consen 7 ELVELLHSL---SPPVRKAAVEHLLGLTGR-GL-QSLSKYSEALLKDLTQLLKDLD--P--AEPAATALVNLS-QKEELR 76 (353)
T ss_pred HHHHHhccC---ChHHHHHHHHHHhhcccc-ch-hhhccchhhhHHHHHHHccCcc--c--ccHHHHHHHHHH-hhHHHH
Confidence 356666663 556777777767666654 11 12221 234666777765321 1 667888888885 456677
Q ss_pred HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh-hHHHHH
Q 010533 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS-PSLISA 333 (508)
Q Consensus 255 ~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~-~~~~~a 333 (508)
+.++.. .+..++..+.......-...|.+|.||+.+|+.-..+-...+.. .+.|.+.........+.+. .-....
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~---~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEK---KDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccc---cccchHHHHHHHhCcccccccchhHH
Confidence 777765 77777777766544566778999999999886532211000000 0133444444444433331 223445
Q ss_pred HHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH-HHHHHHHHHhhCCchhHHHHHhCCcHHHHH-------
Q 010533 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA-RICCSLLSKLAGSDSNKSAIIENGGMDKLI------- 405 (508)
Q Consensus 334 ~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~-~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv------- 405 (508)
+..+.+|+..+.-+..+.+..-+ +.+-+-......+ .|. ....+.|+|++-...+...+.+ -.+..|.
T Consensus 153 A~vf~nls~~~~gR~l~~~~k~~--p~~kll~ft~~~s-~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPla 228 (353)
T KOG2973|consen 153 APVFANLSQFEAGRKLLLEPKRF--PDQKLLPFTSEDS-QVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLA 228 (353)
T ss_pred HHHHHHHhhhhhhhhHhcchhhh--hHhhhhcccccch-hhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcC
Confidence 55667777655444444433211 1111111111111 222 3446666676654444444444 2222222
Q ss_pred -----------------HHHh---ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533 406 -----------------VVSA---RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 406 -----------------~lL~---~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A 465 (508)
++|- .--.++.++..-+-+|.-||. ...-+..+.+.|+.+ +++-+.++..++++ +.+
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYp-ilRElhk~e~ded~-~~a 305 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYP-ILRELHKWEEDEDI-REA 305 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchH-HHHHHhcCCCcHHH-HHH
Confidence 3331 112367899999999999996 445566666665554 55666566677776 567
Q ss_pred HHHHHHhhhc
Q 010533 466 CFMIRNLVAR 475 (508)
Q Consensus 466 ~~aL~nL~~~ 475 (508)
|.-+.++-.+
T Consensus 306 ce~vvq~Lv~ 315 (353)
T KOG2973|consen 306 CEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHh
Confidence 7766666554
No 63
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0015 Score=70.36 Aligned_cols=316 Identities=12% Similarity=0.075 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH----CCcHHHHHHHHhcccCCCHHHHHHH
Q 010533 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK----NGGVELVCSICYKMRCGSKRVLDSC 196 (508)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~----~Gavp~Lv~lL~~~~~~~~~~~~~a 196 (508)
.+.+..|.+.|.+. |...+-.|+.+|.+.|.. +.+.-..-.- .=.+|.++.+.+++ .+.++..|
T Consensus 127 pelLp~L~~~L~s~-------d~n~~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~---spkiRs~A 194 (885)
T KOG2023|consen 127 PELLPQLCELLDSP-------DYNTCEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHP---SPKIRSHA 194 (885)
T ss_pred hhHHHHHHHHhcCC-------cccccchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCC---ChhHHHHH
Confidence 46788888888876 666777889999999975 3321111000 12478888888875 56666666
Q ss_pred HHHHHHhhcCCcchhHHHhcCChHHHHHHH--hcCCCCHHHHHHHHHHHHHhhcCChhhHHHHH--HcCcHHHHHHHHhc
Q 010533 197 LKTMALLVHDVQSTETFRTGGGPKLLVNIL--IDGNEDPEILNSGFAVVAASATGNEVVKESYM--ELKIDELILEILSR 272 (508)
Q Consensus 197 l~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL--~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~--~~G~i~~Lv~lL~~ 272 (508)
+..+....-.+ ...+.. .+...++.| ..+.++++|+...|+++..+..-.+ +.++ -.++++.++..-+.
T Consensus 195 ~~cvNq~i~~~--~qal~~--~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---dkl~phl~~IveyML~~tqd 267 (885)
T KOG2023|consen 195 VGCVNQFIIIQ--TQALYV--HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---DKLVPHLDNIVEYMLQRTQD 267 (885)
T ss_pred HhhhhheeecC--cHHHHH--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---HhcccchHHHHHHHHHHccC
Confidence 66554433222 112211 133333332 1245789999999999888753222 3344 22567777776666
Q ss_pred CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHH-------------------
Q 010533 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLIS------------------- 332 (508)
Q Consensus 273 ~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~------------------- 332 (508)
+++++--+||.....++....++.... .|.. ..||.|++-|.=.. |..++.+
T Consensus 268 ~dE~VALEACEFwla~aeqpi~~~~L~---p~l~-----kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfh 339 (885)
T KOG2023|consen 268 VDENVALEACEFWLALAEQPICKEVLQ---PYLD-----KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFH 339 (885)
T ss_pred cchhHHHHHHHHHHHHhcCcCcHHHHH---HHHH-----HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhh
Confidence 666888889999999987654432211 1222 34566555433111 1111110
Q ss_pred ---------------------------HHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533 333 ---------------------------ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (508)
Q Consensus 333 ---------------------------a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~ 384 (508)
.-|-|+..+. .=+....|.....++.++-+|+.+-.++...+++.+.-+|+.
T Consensus 340 ksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 340 KSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGA 419 (885)
T ss_pred hchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence 0011111110 001111222233456666666655444557888999999999
Q ss_pred hhC-C-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhcCcHHHHHHHHHc-CCCc
Q 010533 385 LAG-S-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR---SPENAARAMEAGSGDLAIQAMLK-FPNA 458 (508)
Q Consensus 385 La~-~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~---~~~~~~~i~~~G~i~~Lv~~L~~-h~~~ 458 (508)
+|. . +..-..+- .-+|.|+++|. ...+-|+.-+||+|..-+.- .+ .... ..+.+-.++++ -.++
T Consensus 420 IAEGcM~g~~p~Lp--eLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~--~~~~----f~pvL~~ll~~llD~N 489 (885)
T KOG2023|consen 420 IAEGCMQGFVPHLP--ELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDS--RDEY----FKPVLEGLLRRLLDSN 489 (885)
T ss_pred HHHHHhhhcccchH--HHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCC--hHhh----hHHHHHHHHHHHhccc
Confidence 983 1 11111121 24677888887 66789999999999986521 11 1111 22333333222 1246
Q ss_pred HHHHHHHHHHHHHhh
Q 010533 459 QQLQRSSCFMIRNLV 473 (508)
Q Consensus 459 ~~vq~~A~~aL~nL~ 473 (508)
.+||+.||.|..-+-
T Consensus 490 K~VQEAAcsAfAtle 504 (885)
T KOG2023|consen 490 KKVQEAACSAFATLE 504 (885)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999988764
No 64
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0095 Score=68.03 Aligned_cols=412 Identities=13% Similarity=0.101 Sum_probs=226.4
Q ss_pred cCCchhhhhhhhhhcccCCCCCCCCCCcCCCcccccccCCcc-CCCCc-------chhhhhhHHHHHHHHHHHHhhcCCC
Q 010533 12 FSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVRTDLTAH-EMGPP-------KTVRTISQEAFDEVVKENMEDLGME 83 (508)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~isQetfd~~v~eni~~~~m~ 83 (508)
-|.+-+.--+++..|.+..-++. +.|.....+..+.++.. ||.+= ..-++|+-|+-...=..-++-+-++
T Consensus 14 ~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E 91 (1075)
T KOG2171|consen 14 LSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSE 91 (1075)
T ss_pred cCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhc
Confidence 35555666677777876554443 66666666655555433 33222 1234456555533333455666677
Q ss_pred hhHHHHHHHHHHhhccccCCCcccc-CCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCC
Q 010533 84 PTEALQDAIQTLSLQGVDLSGIVKC-VPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEG 162 (508)
Q Consensus 84 p~eal~~aI~q~~~qgvdLs~i~~~-~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~ 162 (508)
++.-+|..+.+--+ .|.+. .+. .=-+.+..|-....+. +......|+..|..+...
T Consensus 92 ~~~~vr~k~~dviA------eia~~~l~e-------~WPell~~L~q~~~S~-------~~~~rE~al~il~s~~~~--- 148 (1075)
T KOG2171|consen 92 TEPSVRHKLADVIA------EIARNDLPE-------KWPELLQFLFQSTKSP-------NPSLRESALLILSSLPET--- 148 (1075)
T ss_pred cchHHHHHHHHHHH------HHHHhcccc-------chHHHHHHHHHHhcCC-------CcchhHHHHHHHHhhhhh---
Confidence 77777666643210 11111 000 0223455555555443 666666777777766542
Q ss_pred hhhHHHHHHCCcHHHHHHHHhccc-CCCHHHHHHHHHHHHHhhcCCc-chhHHHh-cCChHHHHHHHhcC--CCCHHHHH
Q 010533 163 SVNAAVATKNGGVELVCSICYKMR-CGSKRVLDSCLKTMALLVHDVQ-STETFRT-GGGPKLLVNILIDG--NEDPEILN 237 (508)
Q Consensus 163 ~~~r~~i~~~Gavp~Lv~lL~~~~-~~~~~~~~~al~aLa~l~~~~~-~~~~i~~-~ggi~~Lv~lL~~~--~~~~~v~~ 237 (508)
..+ ...+-++.+..++..+- .++..+...++.++.......+ ++..+.. ..-+|.++..|... .++.+...
T Consensus 149 ~~~----~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 149 FGN----TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred hcc----ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 111 11334566666665331 1233488888888877664442 2222222 23466666666432 34566677
Q ss_pred HHHHHHHHhhcCChhh-HHHHHHcCcHHHHHHHHhcC--ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc--C
Q 010533 238 SGFAVVAASATGNEVV-KESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI--G 312 (508)
Q Consensus 238 ~a~~~L~~l~~~~e~n-r~~i~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~--g 312 (508)
.++.++-.++...+.. |..+. .+|...+++-++. ++.+...|...|..++.. +....|..... -
T Consensus 225 ~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~---------Ap~~~k~~~~~~~~ 293 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY---------APAMCKKLALLGHT 293 (1075)
T ss_pred HHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh---------hHHHhhhchhhhcc
Confidence 8888888876544432 22222 3566666666654 235666677777766632 11122322221 2
Q ss_pred CHHHHHHHHhcCCCh---------------hHHHHHHHHHHHhhcChhhHhHHhhcCC---HHHHHHHHhccCCCCcHHH
Q 010533 313 IARALVHSLHAGLSS---------------PSLISASIALKAVAVNDEICKSVAENGG---IDALLRCIDDSGLQGNKTV 374 (508)
Q Consensus 313 ~i~~Lv~lL~~~~d~---------------~~~~~a~~aL~~La~~~e~~~~i~e~Gg---i~~Lv~lL~~~~~~~~~~v 374 (508)
.++.++..+....+. .--..+-.+|-.||. ..|| +++++..+.....+.++.-
T Consensus 294 lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~---------~L~g~~v~p~~~~~l~~~l~S~~w~~ 364 (1075)
T KOG2171|consen 294 LVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL---------HLGGKQVLPPLFEALEAMLQSTEWKE 364 (1075)
T ss_pred HHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh---------cCChhhehHHHHHHHHHHhcCCCHHH
Confidence 356666666543311 011122233333332 2343 5566665554333446788
Q ss_pred HHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533 375 ARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453 (508)
Q Consensus 375 ~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~ 453 (508)
+++++.+|+.++ |+.+.-..... ..++.++..|+ ..+|.|+-.||-+|..++..=....+.-...-..+.|+..|.
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld 441 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD 441 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc
Confidence 899999999987 44333222221 24556666666 567999999999999998644333333334446778888885
Q ss_pred cCCCcHHHHHHHHHHHHHhhhcC
Q 010533 454 KFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 454 ~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
. +.++.||..|+.|+-|+....
T Consensus 442 ~-~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 442 S-TQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred c-cCchHHHHHHHHHHHHHHHhC
Confidence 4 577899999999999987543
No 65
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.67 E-value=0.0025 Score=68.08 Aligned_cols=270 Identities=14% Similarity=0.098 Sum_probs=166.7
Q ss_pred HHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHH--h-----cccCCCHHHHHHHHHHHHHhh-cCCcchhHHHhcCChHH
Q 010533 150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSIC--Y-----KMRCGSKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKL 221 (508)
Q Consensus 150 l~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL--~-----~~~~~~~~~~~~al~aLa~l~-~~~~~~~~i~~~ggi~~ 221 (508)
|..||-+.. ++....-+....++..|+.+= . .....+.++...|+..|++++ .....|..+++.|+.+.
T Consensus 2 L~~LRiLsR---d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR---DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHHHHcc---CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 455555554 444444555555566665543 0 122256788889999999876 33355788899999999
Q ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHhhcCChhhHHHHH-HcCcHHHHHHHHhcCCh-----------------HHHHH
Q 010533 222 LVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN-----------------DSIQS 280 (508)
Q Consensus 222 Lv~lL~~~~~---~~~v~~~a~~~L~~l~~~~e~nr~~i~-~~G~i~~Lv~lL~~~~~-----------------~~~~~ 280 (508)
+++.|+.+.+ +.++.-...+.|--++......+..++ +.+++..|+..|..+-. .+..+
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 9999987632 577777788888777766777777777 55899999888864210 34556
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcC---C--C---hhHHHHHHHHHHHhhcCh-hh-----
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG---L--S---SPSLISASIALKAVAVND-EI----- 346 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~---~--d---~~~~~~a~~aL~~La~~~-e~----- 346 (508)
+..+++|++..-..... . -....++.|+.+|... . + ......+..+|.++-... +.
T Consensus 159 iLKllFNit~~~~~~~~--------~--~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~ 228 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVP--------E--EFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPK 228 (446)
T ss_pred HHHHHHHhhhccCcccc--------h--hhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhccc
Confidence 78888898754332221 0 0123455555555543 2 1 234555666666552211 11
Q ss_pred --Hh----HHhhcCCHHHHHHHHhccCCCC----cHHHHHHHHHHHHHhhCC-chhHHHHHh---------------CCc
Q 010533 347 --CK----SVAENGGIDALLRCIDDSGLQG----NKTVARICCSLLSKLAGS-DSNKSAIIE---------------NGG 400 (508)
Q Consensus 347 --~~----~i~e~Ggi~~Lv~lL~~~~~~~----~~~v~~~al~aL~~La~~-~~~k~~Iv~---------------~Gg 400 (508)
.. .......+..|+++|....+.. ..+.+...+.+|.+++.. ...|..+.. .+.
T Consensus 229 ~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~t 308 (446)
T PF10165_consen 229 FQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDT 308 (446)
T ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcc
Confidence 00 0112223666777776432111 125778889999999864 455555543 223
Q ss_pred H-HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 401 M-DKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 401 l-~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
+ ..|+++|. +..+.++..+.-.|..||.+|+.
T Consensus 309 L~~rLlrLmt--~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 309 LRSRLLRLMT--SPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred hHHHHHHHhC--CCCchHHHHHHHHHHHHHhhhHH
Confidence 3 58899997 44489999999999999976543
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.013 Score=62.42 Aligned_cols=312 Identities=13% Similarity=0.101 Sum_probs=185.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcH--HHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCCh
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGV--ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP 219 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gav--p~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi 219 (508)
.....++++..+...|.+ .+| ...+...+++ .+....++.. .+..+...+|++|..-+..- +..|-.++-.
T Consensus 147 p~~~k~~sl~~~gy~ces-~~P--e~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv--~~nf~~E~er 219 (858)
T COG5215 147 PVSGKCESLGICGYHCES-EAP--EDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFV--QGNFCYEEER 219 (858)
T ss_pred chHhHHHHHHHHHHHhhc-cCH--HHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHH--HHhhcchhhh
Confidence 456678899999999985 244 3455555543 2333455554 47788888888887622100 1122222222
Q ss_pred ----HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC-c-
Q 010533 220 ----KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD-D- 293 (508)
Q Consensus 220 ----~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d-d- 293 (508)
+.+++.= ..++.+++..++.++..+..-+-.--+.+++.-....+...+++.++++.-.|...-+.+|..+ |
T Consensus 220 Ny~mqvvceat--q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~ 297 (858)
T COG5215 220 NYFMQVVCEAT--QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDG 297 (858)
T ss_pred chhheeeehhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhh
Confidence 2333332 2578999999999998886544444557777767777788888877765555544433444221 0
Q ss_pred -------chhhhhhcchHHHHHHhcCCHHHHHHHHhc-CCCh-----hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533 294 -------DQVVASQVYGYARRFAKIGIARALVHSLHA-GLSS-----PSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (508)
Q Consensus 294 -------~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~-~~d~-----~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv 360 (508)
+.+|. +.|..++.-+. ..+|.|++||.. +.|. ++-..+..+|--.+. +|. .-.+.+++
T Consensus 298 ~~e~~~~pe~p~-qn~~fa~aav~-dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~g----d~i~~pVl 368 (858)
T COG5215 298 EMEDKYLPEVPA-QNHGFARAAVA-DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKG----DKIMRPVL 368 (858)
T ss_pred HHHHhhcccCch-hhcchHHHHHH-HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---Hhh----hHhHHHHH
Confidence 12233 45555554432 579999999987 3321 222233333322221 111 12345667
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533 361 RCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (508)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~ 438 (508)
......-..++..=.+.+.-+++.+-. +.+....++. .++|.|...|. .+.-.+++-++|++..|+. ....
T Consensus 369 ~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~--D~~l~vk~ttAwc~g~iad----~va~ 441 (858)
T COG5215 369 GFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMS--DSCLWVKSTTAWCFGAIAD----HVAM 441 (858)
T ss_pred HHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcc--cceeehhhHHHHHHHHHHH----HHHH
Confidence 777655444556677788888888763 2355566664 67899999887 4456789999999999984 2333
Q ss_pred HHh-cCcHHHHHHHH-HcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 439 AME-AGSGDLAIQAM-LKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 439 i~~-~G~i~~Lv~~L-~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
++. .|-++..+.+. ..-.+++.+..++||..-|++-+-++
T Consensus 442 ~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~ 483 (858)
T COG5215 442 IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAK 483 (858)
T ss_pred hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhh
Confidence 333 33344444332 22234567778999999999865433
No 67
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.61 E-value=0.00015 Score=49.82 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=36.0
Q ss_pred chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
++++..+++.|+++.|+++|. ++++.+++.++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence 458899999999999999998 678999999999999997
No 68
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.58 E-value=0.00015 Score=49.82 Aligned_cols=39 Identities=13% Similarity=0.297 Sum_probs=34.9
Q ss_pred hhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533 433 PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 433 ~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
++++..+++.|+++.|+++|. +++..+++.++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHc
Confidence 458889999999999999996 457899999999999986
No 69
>PF05536 Neurochondrin: Neurochondrin
Probab=97.53 E-value=0.0076 Score=65.95 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=130.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-----ChhHH-HHHHHH
Q 010533 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-----SSPSL-ISASIA 336 (508)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-----d~~~~-~~a~~a 336 (508)
+...+.+|+..+++-.-.+...+..++.++|... ...+.+.++=|.+-|-.+|+++. ++... .-+...
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~------~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDS------QTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhH------HHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4556678887665444445556667776554321 22345667767888889999854 22333 334445
Q ss_pred HHHhhcChhhH--hHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCC
Q 010533 337 LKAVAVNDEIC--KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD 414 (508)
Q Consensus 337 L~~La~~~e~~--~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~ 414 (508)
|..++..++.. ..+++ -||.|++++....+ ..+...|+.+|..++.+++++.++++.|+++.|.+.+.. .
T Consensus 81 L~~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s~---~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~ 152 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVS--RIPLLLEILSSSSD---LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---Q 152 (543)
T ss_pred HHHHcCChhhhcCHHHHH--HHHHHHHHHHcCCc---hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---C
Confidence 67778777664 34553 58999999987644 379999999999999999999999999999999999983 5
Q ss_pred HHHHHHHHHHHHHHhcCChhhH-----HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533 415 ASVLQEVMSIITVLSLRSPENA-----ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 415 ~~v~e~a~~aL~~La~~~~~~~-----~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
+...+.++.+|.+++.+..... ..+. ..++.+-+......+ ..+-+.|..|.++-.+.
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~--~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHG--EDKFELLEFLSAFLPRS 215 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhcc--chHHHHHHHHHHhcCcC
Confidence 6788999999999886543111 1111 123334333432222 23446788777776654
No 70
>PTZ00429 beta-adaptin; Provisional
Probab=97.49 E-value=0.27 Score=55.75 Aligned_cols=295 Identities=12% Similarity=0.016 Sum_probs=160.7
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
+..|+..|.+. +....+++++.+-..... +.+. ....|-++.++.+. +.++..-+.-.+...
T Consensus 34 ~~ELr~~L~s~-------~~~~kk~alKkvIa~mt~--G~Dv------S~LF~dVvk~~~S~---d~elKKLvYLYL~~y 95 (746)
T PTZ00429 34 GAELQNDLNGT-------DSYRKKAAVKRIIANMTM--GRDV------SYLFVDVVKLAPST---DLELKKLVYLYVLST 95 (746)
T ss_pred HHHHHHHHHCC-------CHHHHHHHHHHHHHHHHC--CCCc------hHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Confidence 44466666665 666778888776655433 2211 12466667777663 444433333333333
Q ss_pred hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHH
Q 010533 204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD 283 (508)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~ 283 (508)
...+ ++.. --.+..+.+-|. +.++.++..|+++++.+. .++.-+. .++.+.+.|...+.-|.+.|+-
T Consensus 96 a~~~---pela-lLaINtl~KDl~--d~Np~IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 96 ARLQ---PEKA-LLAVNTFLQDTT--NSSPVVRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred cccC---hHHH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHH
Confidence 3222 1110 012333333333 458899999999998763 2322222 3456677776666678888887
Q ss_pred HHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHH
Q 010533 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCI 363 (508)
Q Consensus 284 aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL 363 (508)
++..|-..+.. .+.+.|.++.|.++|.+ .|+.++.++..+|..+...+...-.+ ..+-+..|+..+
T Consensus 163 ai~Kly~~~pe------------lv~~~~~~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L 228 (746)
T PTZ00429 163 GLGKLFHDDMQ------------LFYQQDFKKDLVELLND-NNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHL 228 (746)
T ss_pred HHHHHHhhCcc------------cccccchHHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHh
Confidence 88777533211 12245778889998875 47889999999998886532111111 122345566666
Q ss_pred hccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhc
Q 010533 364 DDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAARAMEA 442 (508)
Q Consensus 364 ~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~-~~~~~~~i~~~ 442 (508)
.+.+ ...+-..+.+|.... +...... ...+..+...|+ +.++.|.-.|+.++.++... +++....+..
T Consensus 229 ~e~~----EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~- 297 (746)
T PTZ00429 229 PECN----EWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRCSQELIERCTV- 297 (746)
T ss_pred hcCC----hHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-
Confidence 5532 266667777775532 2221111 134556666666 46789999999999988743 2333332221
Q ss_pred CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc
Q 010533 443 GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477 (508)
Q Consensus 443 G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~ 477 (508)
....+++.++. +++.+|--+...|.-++.+.|
T Consensus 298 rl~~pLv~L~s---s~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 298 RVNTALLTLSR---RDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHhhC---CCccHHHHHHHHHHHHHHHCH
Confidence 12244444431 234555555555555554444
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.025 Score=62.09 Aligned_cols=278 Identities=9% Similarity=0.014 Sum_probs=159.4
Q ss_pred CCcHHHHHHHHhcccCC----CH---HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC--CCHHHHHHHHHH
Q 010533 172 NGGVELVCSICYKMRCG----SK---RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN--EDPEILNSGFAV 242 (508)
Q Consensus 172 ~Gavp~Lv~lL~~~~~~----~~---~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~--~~~~v~~~a~~~ 242 (508)
.+.+|.|+++|.+.+.+ +. .-.-.||..++.++.|. .++.++.+.+.+- ++-.-.+.+.-+
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~----------Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----------IVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc----------chhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 57899999999763321 11 12334666666655543 5667777776443 334455666666
Q ss_pred HHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHh
Q 010533 243 VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (508)
Q Consensus 243 L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~ 322 (508)
++.+..+.+..+-.-+..+++|.++.++..+.--+...+.|+|..++..- +.... + .....+.++.++.-|.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l----~e~~~--n--~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL----PEAII--N--QELLQSKLSALLEGLN 459 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc----hhhcc--c--HhhhhHHHHHHHHHhh
Confidence 66665666666655556789999999998544456677999999887321 00000 0 0111244566666665
Q ss_pred cCCChhHHHHHHHHHHHhhcC-h----hh-HhHHhhcCCHHHHHHHHhccCCC---CcHHHHHHHHHHHHHhhCC--chh
Q 010533 323 AGLSSPSLISASIALKAVAVN-D----EI-CKSVAENGGIDALLRCIDDSGLQ---GNKTVARICCSLLSKLAGS--DSN 391 (508)
Q Consensus 323 ~~~d~~~~~~a~~aL~~La~~-~----e~-~~~i~e~Ggi~~Lv~lL~~~~~~---~~~~v~~~al~aL~~La~~--~~~ 391 (508)
+ .+.+-.++||++-+|+.. . ++ ...... ---+.+++-|-...+. ....++..+..+|..|..+ ++.
T Consensus 460 D--ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 460 D--EPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred h--CchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 4 367889999999999831 1 11 000111 1122233322211221 1247888999999998642 344
Q ss_pred HHHHHhCCcHHHHHH----HHhc----cCC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH
Q 010533 392 KSAIIENGGMDKLIV----VSAR----FSD---DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ 460 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~----lL~~----~~~---~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~ 460 (508)
-..+. +....++. .|.. +.+ -..+|..-|.+|..+-.+-+.-..++.+. ....++++|.+ +++..
T Consensus 537 y~~v~--~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~-iM~lflri~~s-~~s~~ 612 (859)
T KOG1241|consen 537 YPMVQ--KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQ-IMGLFLRIFES-KRSAV 612 (859)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHH-HHHHHHHHHcC-Ccccc
Confidence 44333 33333332 2221 111 12467778888888765444434444332 56778888876 56677
Q ss_pred HHHHHHHHHHHhhh
Q 010533 461 LQRSSCFMIRNLVA 474 (508)
Q Consensus 461 vq~~A~~aL~nL~~ 474 (508)
+++.|-.|+.-++.
T Consensus 613 v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 613 VHEEAFLAVSTLAE 626 (859)
T ss_pred chHHHHHHHHHHHH
Confidence 88888888887764
No 72
>PTZ00429 beta-adaptin; Provisional
Probab=97.41 E-value=0.21 Score=56.70 Aligned_cols=285 Identities=15% Similarity=0.049 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~ 221 (508)
+.---+.|+-.+.++-.. +++ .+.+.|.++.|..+|.. .+..++.+|+.+|..+....... --...+.+..
T Consensus 153 ~pYVRKtAalai~Kly~~--~pe---lv~~~~~~~~L~~LL~D---~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~ 223 (746)
T PTZ00429 153 DPYVRKTAAMGLGKLFHD--DMQ---LFYQQDFKKDLVELLND---NNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNR 223 (746)
T ss_pred CHHHHHHHHHHHHHHHhh--Ccc---cccccchHHHHHHHhcC---CCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHH
Confidence 444445555566665543 343 44567888999998875 57899999999998886533211 1122333455
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a 301 (508)
++..|.. .++..|...+.+|..-. +...... ...+..+...|++.+..|+-+|+.++.++....+.
T Consensus 224 Ll~~L~e--~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~------- 289 (746)
T PTZ00429 224 LVYHLPE--CNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ------- 289 (746)
T ss_pred HHHHhhc--CChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH-------
Confidence 5555543 35777777777775422 2111111 24566677777776668888899999888743211
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHH
Q 010533 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSL 381 (508)
Q Consensus 302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~a 381 (508)
+..+.... ....+|+.|+. ++++++.-+...|..+.... ..+...- ++... -..+| ...|....+.+
T Consensus 290 -~~~~~~~~-rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~---P~lf~~~-~~~Ff---~~~~D--p~yIK~~KLeI 356 (746)
T PTZ00429 290 -ELIERCTV-RVNTALLTLSR--RDAETQYIVCKNIHALLVIF---PNLLRTN-LDSFY---VRYSD--PPFVKLEKLRL 356 (746)
T ss_pred -HHHHHHHH-HHHHHHHHhhC--CCccHHHHHHHHHHHHHHHC---HHHHHHH-HHhhh---cccCC--cHHHHHHHHHH
Confidence 11111111 12366677643 24555555554454444321 1111110 11111 11111 12566666777
Q ss_pred HHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHH
Q 010533 382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQL 461 (508)
Q Consensus 382 L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~v 461 (508)
|..|+. ++|...|+ .-|.+... ..+..+++.++.++..+|.+-|..... .+..|++++... . .+
T Consensus 357 L~~Lan-e~Nv~~IL-----~EL~eYa~--d~D~ef~r~aIrAIg~lA~k~~~~a~~-----cV~~Ll~ll~~~-~--~~ 420 (746)
T PTZ00429 357 LLKLVT-PSVAPEIL-----KELAEYAS--GVDMVFVVEVVRAIASLAIKVDSVAPD-----CANLLLQIVDRR-P--EL 420 (746)
T ss_pred HHHHcC-cccHHHHH-----HHHHHHhh--cCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCC-c--hh
Confidence 766663 33333333 23334443 335566667777777776655543332 234455555321 1 12
Q ss_pred HHHHHHHHHHhhhcCcc
Q 010533 462 QRSSCFMIRNLVARNPE 478 (508)
Q Consensus 462 q~~A~~aL~nL~~~~~e 478 (508)
..++..+++++..+.|+
T Consensus 421 v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 421 LPQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHHCcc
Confidence 23455566666554444
No 73
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.17 Score=58.19 Aligned_cols=284 Identities=12% Similarity=0.111 Sum_probs=147.0
Q ss_pred CcHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533 173 GGVELVCSICYKM-RCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (508)
Q Consensus 173 Gavp~Lv~lL~~~-~~~~~~~~~~al~aLa~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~ 248 (508)
..+|.++..|... +.+|.+....++..|..++.-. +.+.. ...++..+++-.+..=+..++..|+.+|..++.
T Consensus 202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~---pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE---PKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE 278 (1075)
T ss_pred HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 4688888877543 2245666777888887776532 33333 223444555544433466777788877776643
Q ss_pred CChhhHHHHHHc--CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcC---CHHHHHHHHh
Q 010533 249 GNEVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIG---IARALVHSLH 322 (508)
Q Consensus 249 ~~e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g---~i~~Lv~lL~ 322 (508)
.-+...+..-.. -.++.++.++....++ .-|.=.--.-+|+...+...+..-.-.++ ..| .+|+++..+.
T Consensus 279 ~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D----~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 279 YAPAMCKKLALLGHTLVPVLLAMMTEEEDD----DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred hhHHHhhhchhhhccHHHHHHHhcCCcccc----hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 322211111111 2344444444332111 00000000001110111110111111122 223 3566665554
Q ss_pred cC---CChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHh
Q 010533 323 AG---LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIE 397 (508)
Q Consensus 323 ~~---~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~ 397 (508)
.. ++..-...+..+|+.++. -|..... |-++.++.+.-..-.++++.|+-+||.+|+.++.+ ++....- .
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~E---Gc~~~m~-~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~ 429 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIAE---GCSDVMI-GNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-H 429 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc---ccHHHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-H
Confidence 32 233344566666666664 2333222 23444443333222234569999999999999863 3433322 2
Q ss_pred CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH----HHHcCCCcHHHHHHHHHHHHHhh
Q 010533 398 NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQ----AMLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 398 ~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~----~L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
.-.+|.|+..|.. ..++.|+.+|+++|-|+....+ ..++ .+..+.|++ .|. .++.+.||+++..+|...+
T Consensus 430 e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~---~~~l-~pYLd~lm~~~l~~L~-~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 430 ERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECD---KSIL-EPYLDGLMEKKLLLLL-QSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCc---HHHH-HHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHH
Confidence 3456788888863 4678999999999999986443 2233 233444443 443 3466889999999998876
Q ss_pred h
Q 010533 474 A 474 (508)
Q Consensus 474 ~ 474 (508)
.
T Consensus 504 ~ 504 (1075)
T KOG2171|consen 504 D 504 (1075)
T ss_pred H
Confidence 3
No 74
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.11 Score=59.06 Aligned_cols=265 Identities=14% Similarity=0.107 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHH-----hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHH
Q 010533 191 RVLDSCLKTMALLVHDVQSTETFR-----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (508)
Q Consensus 191 ~~~~~al~aLa~l~~~~~~~~~i~-----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~ 265 (508)
+-+.-++.+|.++...+++-..+. --|--+.+..+|+.+ .+++++..++.++..+. .+.++-..+++.|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~-~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCR-KHPKLQILALQVILLAT-ANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHc-CCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHH
Confidence 445567888888887664322222 235567777788764 57889999999998774 45667778889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH------
Q 010533 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA------ 339 (508)
Q Consensus 266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~------ 339 (508)
|+.+|.+.. +..+-+..+|..|+...+. ++.-++.|++.-+.+.+-..........++..|+.
T Consensus 1818 LL~lLHS~P-S~R~~vL~vLYAL~S~~~i----------~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1818 LLTLLHSQP-SMRARVLDVLYALSSNGQI----------GKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred HHHHHhcCh-HHHHHHHHHHHHHhcCcHH----------HHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 999998743 3444466677777654322 22222344443333332221111111111111111
Q ss_pred ---------------------------------------------------------hhcC--------hhhHh------
Q 010533 340 ---------------------------------------------------------VAVN--------DEICK------ 348 (508)
Q Consensus 340 ---------------------------------------------------------La~~--------~e~~~------ 348 (508)
++.. ++...
T Consensus 1887 ~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqs 1966 (2235)
T KOG1789|consen 1887 TGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQS 1966 (2235)
T ss_pred cCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhh
Confidence 1110 00000
Q ss_pred ----HH---hhcCCH------------------------HHHHHHHhccCCCC-cHHHHHHHHHHHHHhhCCchhHHHHH
Q 010533 349 ----SV---AENGGI------------------------DALLRCIDDSGLQG-NKTVARICCSLLSKLAGSDSNKSAII 396 (508)
Q Consensus 349 ----~i---~e~Ggi------------------------~~Lv~lL~~~~~~~-~~~v~~~al~aL~~La~~~~~k~~Iv 396 (508)
.. ..-||+ +.++++|.....++ ..++...|+..| +..++...+.|.
T Consensus 1967 Ag~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L--~r~hP~LADqip 2044 (2235)
T KOG1789|consen 1967 AGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVEL--VRHHPNLADQLP 2044 (2235)
T ss_pred cchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHH--HHhCcchhhhCC
Confidence 00 001221 22334443322111 123333333322 235777788888
Q ss_pred hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533 397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
-.|-+|.++.+|. ..+..+-..|..+|..|+. |.-++.++.....+..++..|++.++ .---||.+|..+..|+
T Consensus 2045 ~LGylPK~~~Am~--~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~~~---~~GLA~EalkR~~~r~ 2118 (2235)
T KOG1789|consen 2045 SLGYLPKFCTAMC--LQNTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQPS---LMGLAAEALKRLMKRN 2118 (2235)
T ss_pred CccchHHHHHHHH--hcCCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhcch---HHHHHHHHHHHHHHHh
Confidence 8899999999997 2334455889999999995 77888888887777789999987543 3347999999888753
No 75
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.23 E-value=0.065 Score=56.61 Aligned_cols=56 Identities=11% Similarity=0.082 Sum_probs=39.4
Q ss_pred cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 400 gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
.++.|+.+++ ++.+++.++.+|..+- +| ..++.|++.|. +..+.+.|-.++..++-
T Consensus 241 a~~~L~~ll~----d~~vr~~a~~AlG~lg--~p---------~av~~L~~~l~----d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 241 AQAWLRELLQ----AAATRREALRAVGLVG--DV---------EAAPWCLEAMR----EPPWARLAGEAFSLITG 296 (410)
T ss_pred HHHHHHHHhc----ChhhHHHHHHHHHHcC--Cc---------chHHHHHHHhc----CcHHHHHHHHHHHHhhC
Confidence 4556666665 2447888888887663 33 36788888884 34588899999999874
No 76
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.00 E-value=0.018 Score=52.29 Aligned_cols=133 Identities=14% Similarity=0.196 Sum_probs=101.8
Q ss_pred hHhHHhhcCCHHHHHHHHhccCCC--CcHHHHHHHHHHHHHhhCCch-hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH
Q 010533 346 ICKSVAENGGIDALLRCIDDSGLQ--GNKTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVM 422 (508)
Q Consensus 346 ~~~~i~e~Ggi~~Lv~lL~~~~~~--~~~~v~~~al~aL~~La~~~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~ 422 (508)
+...+...||+..|+++++++.+. ...++...++.++..|..++- .++ ......+..++..++....++.+++.+.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence 345678899999999999986541 013788889999999987654 343 5566678889999986555789999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533 423 SIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF 481 (508)
Q Consensus 423 ~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~ 481 (508)
+.|-++...++.....+-+.=-++.|+..|+. .++.+|.+|-..|-.|-.+.++..+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHH
Confidence 99999999888777777666668999999976 5688998888777777666555443
No 77
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.00 E-value=0.024 Score=51.45 Aligned_cols=129 Identities=12% Similarity=0.199 Sum_probs=96.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533 305 ARRFAKIGIARALVHSLHAGLS-----SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 305 ~~~i~~~g~i~~Lv~lL~~~~d-----~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
+..+...||+..|++.+++++. .+.+..+..++..|....-......+.--|..++..+..... ++.+...++
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~--d~~i~q~sL 81 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM--DASILQRSL 81 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc--cchHHHHHH
Confidence 4467778999999999999874 356666666776666544334445554456677777775432 458999999
Q ss_pred HHHHHhhCCchhHHHHHhCCc-HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533 380 SLLSKLAGSDSNKSAIIENGG-MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA 437 (508)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~Gg-l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~ 437 (508)
..|.++..++...-..|+... ++.|+..|+ ..++.+|.++.+.+-+|-.+-++..+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq--~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQ--VSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHH--cCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 999999987777666666664 899999999 67899999999999999876665443
No 78
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.95 E-value=0.15 Score=57.83 Aligned_cols=255 Identities=14% Similarity=0.184 Sum_probs=145.7
Q ss_pred HHhcCChHHHHHHHhcC---CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc---C-C----hHHHHHH
Q 010533 213 FRTGGGPKLLVNILIDG---NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR---Q-R----NDSIQSL 281 (508)
Q Consensus 213 i~~~ggi~~Lv~lL~~~---~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~---~-~----~~~~~~A 281 (508)
+.+.||+..++.+|..- +...++....++.|..+| +...||+.+++.|+++.|++.|+. . . .++.+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 34578999999988652 335677778888888875 568999999999999999999963 1 2 1233333
Q ss_pred HHHHHHhc---CCCcchhhhhhcchHHHHHH----hcCCHHHHHHHHhcCC---ChhHHHHHHHHHHHhhcC-hhhHhHH
Q 010533 282 YDAIRVLL---TPDDDQVVASQVYGYARRFA----KIGIARALVHSLHAGL---SSPSLISASIALKAVAVN-DEICKSV 350 (508)
Q Consensus 282 ~~aL~~L~---~~dd~r~~~~~a~~~~~~i~----~~g~i~~Lv~lL~~~~---d~~~~~~a~~aL~~La~~-~e~~~~i 350 (508)
...+-.|. ..++.+...+. ..... ...-+..+++.+.+.. ++.+...++..|-+|+.. ++..+.+
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~----~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSS----SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHHhhhhhhhcccc----ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 33333332 21111110000 00000 0012666777776532 467888899999999984 4444555
Q ss_pred hhcCCHHHHHHHHhccCCC--C-cHHHHHHHHHHHHHhhCC---chhHHHHHhCCcHHHHHHHHhccCC------CHH--
Q 010533 351 AENGGIDALLRCIDDSGLQ--G-NKTVARICCSLLSKLAGS---DSNKSAIIENGGMDKLIVVSARFSD------DAS-- 416 (508)
Q Consensus 351 ~e~Ggi~~Lv~lL~~~~~~--~-~~~v~~~al~aL~~La~~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~------~~~-- 416 (508)
++. .++.+++ ....+. . +.-.++..|.+..++-.+ ...|+.|++.|.+...++.|..|.. ++.
T Consensus 268 v~~--F~p~l~f-~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk 344 (802)
T PF13764_consen 268 VEH--FKPYLDF-DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK 344 (802)
T ss_pred HHH--HHHhcCh-hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence 442 2232221 111100 1 112233333333444322 2568999999999999998875543 122
Q ss_pred ------HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 417 ------VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 417 ------v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
-...++..|.-||.+++..+ .+++.+++ .++..|..-++...+-.-|=-.|-.+.. +++
T Consensus 345 ~~l~~psLp~iL~lL~GLa~gh~~tQ-~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~-~~~ 409 (802)
T PF13764_consen 345 EFLSRPSLPYILRLLRGLARGHEPTQ-LLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE-NED 409 (802)
T ss_pred HHhcCCcHHHHHHHHHHHHhcCHHHH-HHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc-Chh
Confidence 34568899999998776544 44666677 4455565555444554444445544443 454
No 79
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.027 Score=60.96 Aligned_cols=263 Identities=11% Similarity=0.128 Sum_probs=153.9
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcC--------ChHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--------GPKLLVNILIDGNEDPEILNSGFAVVAA 245 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~g--------gi~~Lv~lL~~~~~~~~v~~~a~~~L~~ 245 (508)
++|.|+.+|.+. |.-...-|..+|.-++.|. ..+.+.. -+|.++++.++ .+++++..|+.++-.
T Consensus 129 lLp~L~~~L~s~---d~n~~EgA~~AL~KIcEDs---a~~lds~~~~rpl~~mipkfl~f~~h--~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 129 LLPQLCELLDSP---DYNTCEGAFGALQKICEDS---AQFLDSDVLTRPLNIMIPKFLQFFKH--PSPKIRSHAVGCVNQ 200 (885)
T ss_pred HHHHHHHHhcCC---cccccchhHHHHHHHHhhh---HHHHhhhcccCchHHhHHHHHHHHhC--CChhHHHHHHhhhhh
Confidence 478889999875 3334445677777777654 4444442 36778888874 478999999988865
Q ss_pred hhcCChhhHHHHH-Hc-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-h-cCCHHHHHHHH
Q 010533 246 SATGNEVVKESYM-EL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHSL 321 (508)
Q Consensus 246 l~~~~e~nr~~i~-~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~-~g~i~~Lv~lL 321 (508)
.-.. ..+.++ .. .-++.|..+-...+++++++.|.+|..|.. .|. ..++ . .+.++-.+..-
T Consensus 201 ~i~~---~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~---------dkl~phl~~IveyML~~t 265 (885)
T KOG2023|consen 201 FIII---QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRP---------DKLVPHLDNIVEYMLQRT 265 (885)
T ss_pred eeec---CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcH---------HhcccchHHHHHHHHHHc
Confidence 4322 223333 21 234444444333345899999999998872 121 1232 1 14456666655
Q ss_pred hcCCChhHHHHHHHHHHHhhcChhhHhHHhh---cCCHHHHHHHHhccCCCC----------------------------
Q 010533 322 HAGLSSPSLISASIALKAVAVNDEICKSVAE---NGGIDALLRCIDDSGLQG---------------------------- 370 (508)
Q Consensus 322 ~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e---~Ggi~~Lv~lL~~~~~~~---------------------------- 370 (508)
++. |.++--++|.-...+|..+ .|..+.. ..-||.|++-|.-+.++.
T Consensus 266 qd~-dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~ 343 (885)
T KOG2023|consen 266 QDV-DENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE 343 (885)
T ss_pred cCc-chhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence 543 5678888998888888876 4444332 124566664443211000
Q ss_pred ------------------------cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCC--HHHHHHHHHH
Q 010533 371 ------------------------NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDD--ASVLQEVMSI 424 (508)
Q Consensus 371 ------------------------~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~--~~v~e~a~~a 424 (508)
+..+++....+|--||. |-....++.++-+|+.+-.+ =.++|.++-+
T Consensus 344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLA 416 (885)
T KOG2023|consen 344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLA 416 (885)
T ss_pred ccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHH
Confidence 02233333333333332 33334566777777655433 3589999999
Q ss_pred HHHHhcCChhhHHHHHhc--CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533 425 ITVLSLRSPENAARAMEA--GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 425 L~~La~~~~~~~~~i~~~--G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
|.+++.+- .+-++.. ..+|.++++|.. ..+-|++-.||-|...+
T Consensus 417 lGAIAEGc---M~g~~p~LpeLip~l~~~L~D--KkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 417 LGAIAEGC---MQGFVPHLPELIPFLLSLLDD--KKPLVRSITCWTLSRYS 462 (885)
T ss_pred HHHHHHHH---hhhcccchHHHHHHHHHHhcc--CccceeeeeeeeHhhhh
Confidence 99998642 2222221 147888888854 45678888999988764
No 80
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.21 Score=50.13 Aligned_cols=243 Identities=9% Similarity=0.096 Sum_probs=147.4
Q ss_pred hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH--HHHHHhcCCCCHHHHHHHH
Q 010533 163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL--LVNILIDGNEDPEILNSGF 240 (508)
Q Consensus 163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~--Lv~lL~~~~~~~~v~~~a~ 240 (508)
......++.+|.+|.++..... .|.++...|...+..+.--+..-..+....-... ++.+-. ..+.-+....+
T Consensus 118 VseillvvNaeilklildcIgg---eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa--kcndiaRvRVl 192 (524)
T KOG4413|consen 118 VSEILLVVNAEILKLILDCIGG---EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA--KCNDIARVRVL 192 (524)
T ss_pred HHHHHHHhhhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh--hhhhHHHHHHH
Confidence 3344566789999999998876 4678888889998887754433344444443322 222211 12344555666
Q ss_pred HHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHH
Q 010533 241 AVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALV 318 (508)
Q Consensus 241 ~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv 318 (508)
..+-.+.+.++..-...-+.|.+..|..-|+...+ -++.+.......|... +|.+.++ +.|.|+.+.
T Consensus 193 eLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-----------eHgreflaQeglIdlic 261 (524)
T KOG4413|consen 193 ELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-----------EHGREFLAQEGLIDLIC 261 (524)
T ss_pred HHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-----------hhhhhhcchhhHHHHHH
Confidence 77777777777777777788988888888876444 4455555666666532 2445565 779999999
Q ss_pred HHHhcCC-Ch-hHHHHHH---HHHHHhhcCh----hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc
Q 010533 319 HSLHAGL-SS-PSLISAS---IALKAVAVND----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD 389 (508)
Q Consensus 319 ~lL~~~~-d~-~~~~~a~---~aL~~La~~~----e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~ 389 (508)
+++.... ++ +...... ..+++++.-+ ..|++..- .|+-.++++.. .+++.++.|..+|+.|-++.
T Consensus 262 nIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiEm----nDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 262 NIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEM----NDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhc----CCchHHHHHHHHHHhccCCc
Confidence 9887533 33 1111111 2234444322 22333221 12333444443 23489999999999998899
Q ss_pred hhHHHHHhCCc--HHH-HHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 390 SNKSAIIENGG--MDK-LIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 390 ~~k~~Iv~~Gg--l~~-Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
++++.+.+.|- .+. +.++..+ +...-++.+..+|.+++
T Consensus 336 eGadlllkTgppaaehllarafdq--nahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 336 EGADLLLKTGPPAAEHLLARAFDQ--NAHAKQEAAIHALAAIA 376 (524)
T ss_pred chhHHHhccCChHHHHHHHHHhcc--cccchHHHHHHHHHHhh
Confidence 99998888774 233 3333332 22334677888888877
No 81
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.76 E-value=0.4 Score=50.73 Aligned_cols=224 Identities=10% Similarity=0.010 Sum_probs=137.1
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~ 252 (508)
.+++.|+..|+.. ++.++...+..++.. .+. ..++..|++.|.. .+..+...+..+|+.+ +.+
T Consensus 54 ~a~~~L~~aL~~d--~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d--~~~~vr~aaa~ALg~i--~~~- 116 (410)
T TIGR02270 54 AATELLVSALAEA--DEPGRVACAALALLA--QED--------ALDLRSVLAVLQA--GPEGLCAGIQAALGWL--GGR- 116 (410)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcC--CCHHHHHHHHHHHhcC--Cch-
Confidence 4688888888654 345555433333321 111 1137889999874 4667888888888764 222
Q ss_pred hHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (508)
Q Consensus 253 nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~ 332 (508)
+..+.|+.+|.+.+..+...+..++.... ....+.|..+|++ .++.+...
T Consensus 117 --------~a~~~L~~~L~~~~p~vR~aal~al~~r~---------------------~~~~~~L~~~L~d-~d~~Vra~ 166 (410)
T TIGR02270 117 --------QAEPWLEPLLAASEPPGRAIGLAALGAHR---------------------HDPGPALEAALTH-EDALVRAA 166 (410)
T ss_pred --------HHHHHHHHHhcCCChHHHHHHHHHHHhhc---------------------cChHHHHHHHhcC-CCHHHHHH
Confidence 35677888887665555555554443211 1245788888874 47888899
Q ss_pred HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
++.+|+.+-.. ..++.|...+.+. ++.|...|+.+|..+- .+ +++++++.+.. .
T Consensus 167 A~raLG~l~~~----------~a~~~L~~al~d~----~~~VR~aA~~al~~lG-~~---------~A~~~l~~~~~--~ 220 (410)
T TIGR02270 167 ALRALGELPRR----------LSESTLRLYLRDS----DPEVRFAALEAGLLAG-SR---------LAWGVCRRFQV--L 220 (410)
T ss_pred HHHHHHhhccc----------cchHHHHHHHcCC----CHHHHHHHHHHHHHcC-CH---------hHHHHHHHHHh--c
Confidence 99998887643 3566677666653 4589999999986653 22 23456666443 2
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV 486 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~ 486 (508)
...........++ .+. +++ ..++.|..+++. +.+++.+.+++..+ +.|.....+++.
T Consensus 221 ~g~~~~~~l~~~l-al~-~~~---------~a~~~L~~ll~d----~~vr~~a~~AlG~l--g~p~av~~L~~~ 277 (410)
T TIGR02270 221 EGGPHRQRLLVLL-AVA-GGP---------DAQAWLRELLQA----AATRREALRAVGLV--GDVEAAPWCLEA 277 (410)
T ss_pred cCccHHHHHHHHH-HhC-Cch---------hHHHHHHHHhcC----hhhHHHHHHHHHHc--CCcchHHHHHHH
Confidence 2233333333333 333 333 356777777753 34889999999875 567777776664
No 82
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.71 E-value=0.0055 Score=49.48 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN 435 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~ 435 (508)
|+.|++.|..+ +++.++..++.+|+.+- ....++.|+++++ .+++.|+..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~---~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~--~--- 60 (88)
T PF13646_consen 1 IPALLQLLQND---PDPQVRAEAARALGELG----------DPEAIPALIELLK--DEDPMVRRAAARALGRIG--D--- 60 (88)
T ss_dssp HHHHHHHHHTS---SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCH--H---
T ss_pred CHHHHHHHhcC---CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--C---
Confidence 57889988543 24589999999998542 1145899999997 678999999999999873 2
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (508)
Q Consensus 436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~ 470 (508)
...++.|.+++.. +++..|+..|.++|.
T Consensus 61 ------~~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ------PEAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 2367888898865 456778888888873
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.67 E-value=0.0095 Score=48.06 Aligned_cols=88 Identities=20% Similarity=0.255 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHH
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS 393 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~ 393 (508)
|+.|++.|.+.+++.+...++.+|+.+... ..++.|+.++.+ +++.|+..++.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~----------~~~~~L~~~l~d----~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP----------EAIPALIELLKD----EDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH----------HHHHHHHHHHTS----SSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-------
Confidence 688999996666888999999988855321 247889999954 24589999999999872
Q ss_pred HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHH
Q 010533 394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIIT 426 (508)
Q Consensus 394 ~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~ 426 (508)
...+++.|.++|.. .++..++..|+.+|+
T Consensus 60 ---~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 33488999999973 345778899988874
No 84
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.56 E-value=0.0049 Score=45.46 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 415 ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 415 ~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
+.+++.|+++|.+++...++...... ...++.|+.+|+. ++..|+..|||+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d--~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQD--DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTS--SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHhcC
Confidence 46899999999999877777666643 4578899998854 4569999999999875
No 85
>PRK14707 hypothetical protein; Provisional
Probab=96.51 E-value=0.92 Score=55.47 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=173.7
Q ss_pred HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC
Q 010533 171 KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (508)
Q Consensus 171 ~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~ 250 (508)
...+|-.++..+++. ++..--..+...|+..+-.......-++..++-..+..|....+.... ..+..+|..-..++
T Consensus 203 ~~q~ia~~lNa~sKW--p~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C-~~a~~~lA~rl~~~ 279 (2710)
T PRK14707 203 DAQGVATVLNALCKW--PDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVC-AAAASALAERLVDD 279 (2710)
T ss_pred chHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHhhh
Confidence 344555666656554 233333345555655443332222334567888888888876554443 34444444433445
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHH-HhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChh
Q 010533 251 EVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIR-VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSP 328 (508)
Q Consensus 251 e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~-~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~ 328 (508)
..-++.+-.. .+...+..|..-.+ .+-+.|+..|. .|. +| .. ..+ -.+.-.+...++.|.+-+|..
T Consensus 280 ~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl~-~d-~~--------l~~-~~~~~~~~~~LNalsKWpd~~ 347 (2710)
T PRK14707 280 PGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERLA-DD-PE--------LCK-ALNARGLSTALNALSKWPDNP 347 (2710)
T ss_pred HHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHHh-cc-Hh--------hhh-ccchHHHHHHHHHhhcCCCch
Confidence 5445544332 23344455554332 44444443333 333 22 11 011 112234666777777777655
Q ss_pred HHHHHHHHH-HHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH-hhCCchhHHHHHhCCcHHHHHH
Q 010533 329 SLISASIAL-KAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK-LAGSDSNKSAIIENGGMDKLIV 406 (508)
Q Consensus 329 ~~~~a~~aL-~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~-La~~~~~k~~Iv~~Ggl~~Lv~ 406 (508)
+-..++.+| ..|+.+++.++.+- .-|+..+++.|..-++. .+...+...|.. |.++++.+..+ +..++.-++.
T Consensus 348 ~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~---~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~ln 422 (2710)
T PRK14707 348 VCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT---PVCAAAASALAEHVVDDLELRKGL-DPQGVSNALN 422 (2710)
T ss_pred hHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHH
Confidence 556666666 56777888887765 34678889999988775 577777777766 55666666666 5567888889
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533 407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV 486 (508)
Q Consensus 407 lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~ 486 (508)
.|.+++ +..++..++.+|+.-..++++.++.+--.+ +..++.++.+.|+++.. ++|+..|.-=..+.+++++.|--+
T Consensus 423 alsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p~c-~~aa~~La~~l~~~~~l~~a~~~q 499 (2710)
T PRK14707 423 ALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTPIC-GQTASALAARLAHERRLRKALKPQ 499 (2710)
T ss_pred HhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCChhH-HHHHHHHHHHhcccHHHHhhcCHH
Confidence 998876 456778888888876668888887764444 55666888889988665 445555544445667776665443
Q ss_pred c
Q 010533 487 S 487 (508)
Q Consensus 487 g 487 (508)
+
T Consensus 500 ~ 500 (2710)
T PRK14707 500 E 500 (2710)
T ss_pred H
Confidence 3
No 86
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.50 E-value=0.058 Score=56.24 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHH
Q 010533 326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLI 405 (508)
Q Consensus 326 d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv 405 (508)
++++...+...++++..+.+..+.+.+.+.--.++..|...... ..=.++|+..++.+..-+.+...+ -.|.+..|+
T Consensus 38 ~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~--~~ER~QALkliR~~l~~~~~~~~~-~~~vvralv 114 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN--DVEREQALKLIRAFLEIKKGPKEI-PRGVVRALV 114 (371)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC--hHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHH
Confidence 36777888889999999999999999988766677778764332 244569999999986543332222 446678889
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 406 VVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 406 ~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
.+.. ..+...+..|..+|+.|+..+|+. +.+.||+..|++.+-.++ ..+....+.++-.+. .+|..|+++..
T Consensus 115 aiae--~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~--~~~~~~l~~~lL~lL-d~p~tR~yl~~ 186 (371)
T PF14664_consen 115 AIAE--HEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGS--FSISESLLDTLLYLL-DSPRTRKYLRP 186 (371)
T ss_pred HHHh--CCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhcc--HhHHHHHHHHHHHHh-CCcchhhhhcC
Confidence 8888 466789999999999999999875 557899999999997643 336667788888875 47888877665
No 87
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.33 E-value=0.63 Score=53.04 Aligned_cols=227 Identities=14% Similarity=0.129 Sum_probs=132.8
Q ss_pred HHHHCCcHHHHHHHHhcccC--CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC--CCC----HHHHHHH
Q 010533 168 VATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NED----PEILNSG 239 (508)
Q Consensus 168 ~i~~~Gavp~Lv~lL~~~~~--~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~----~~v~~~a 239 (508)
.+.+.|++..|++++.+... .+.+++...++.|...+.-..+|..+++.|+++.|++.|..- .+. .++.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 55667899999999976432 345677777788877777667789999999999999988532 112 5777777
Q ss_pred HHHHHHhhcCChhhHHHHH------HcC--------cHHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533 240 FAVVAASATGNEVVKESYM------ELK--------IDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQV 301 (508)
Q Consensus 240 ~~~L~~l~~~~e~nr~~i~------~~G--------~i~~Lv~lL~~~~----~~~~~~A~~aL~~L~~~dd~r~~~~~a 301 (508)
+.++..+... .+...+. ... -+..+++.+.+.. ..+.+..++.|-+|+.+++..
T Consensus 192 L~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~------ 263 (802)
T PF13764_consen 192 LEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK------ 263 (802)
T ss_pred HHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH------
Confidence 7776665432 2222121 112 2667777777542 267778889999999887532
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCC-----ChhH-HHHHHHHHHHhhcC---hhhHhHHhhcCCHHHHHHHHhccCCCC--
Q 010533 302 YGYARRFAKIGIARALVHSLHAGL-----SSPS-LISASIALKAVAVN---DEICKSVAENGGIDALLRCIDDSGLQG-- 370 (508)
Q Consensus 302 ~~~~~~i~~~g~i~~Lv~lL~~~~-----d~~~-~~~a~~aL~~La~~---~e~~~~i~e~Ggi~~Lv~lL~~~~~~~-- 370 (508)
.+.+++ -..+.++ +.... +... +..-|.....+-.+ +..+..|.+.|.+...++.|..+....
T Consensus 264 ---m~~Lv~--~F~p~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~ 337 (802)
T PF13764_consen 264 ---MDALVE--HFKPYLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKN 337 (802)
T ss_pred ---HHHHHH--HHHHhcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccccc
Confidence 233432 1333333 22221 1112 22233333333322 245778999999998888876542210
Q ss_pred --c--------HHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533 371 --N--------KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 371 --~--------~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
+ ..-+..++..|+-|+......+.++..+++ +++..|.
T Consensus 338 ~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 338 TDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE 385 (802)
T ss_pred CCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence 1 112334566666666544444444555556 3334443
No 88
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.31 E-value=0.0086 Score=44.15 Aligned_cols=54 Identities=22% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (508)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L 428 (508)
.++..|+.+|++++........-.....++.|+.+|+ .+++.|+..||++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTT--SSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHhcC
Confidence 5889999999999865433333344468999999998 56789999999999875
No 89
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.12 E-value=0.05 Score=53.41 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcC-CcchhHHHhcCChHH
Q 010533 143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-VQSTETFRTGGGPKL 221 (508)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~-~~~~~~i~~~ggi~~ 221 (508)
...+..||+.|..+|-- .|+.|..+.+..++..|+++|... ....++..++.+|.+++-+ .++...|-+.+|+..
T Consensus 105 ~~li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLST 180 (257)
T ss_pred hHHHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHH
Confidence 34567789999999987 899999999999999999999554 4678899999999776644 466788889999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAAS 246 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l 246 (508)
++.++++.+.+.++.-.++..|...
T Consensus 181 v~~llk~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred HHHHHccccccHHHhHHHHHHHHHH
Confidence 9999987766666666666555544
No 90
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.05 E-value=1.5 Score=48.58 Aligned_cols=172 Identities=12% Similarity=0.165 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhH---HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKS---VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS 390 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~---i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~ 390 (508)
+..++..|++. .+.+...++.+++.|+.-=..|.. +...|. .|.+.|.. ..++++-..+++|..+...-.
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylge----eypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGE----EYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCc----ccHHHHHHHHHHHHHHHHhcc
Confidence 34555666653 466778888888888865555533 333343 24455543 245899888888888763211
Q ss_pred -hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHH
Q 010533 391 -NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF 467 (508)
Q Consensus 391 -~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~--~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~ 467 (508)
-+..=--.|.+|.|.-.|+ +.+..|++++...+..+|.+.|+.. ++... +---|+++|+.| +..++++|..
T Consensus 874 m~km~pPi~dllPrltPILk--nrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkah--kK~iRRaa~n 947 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAH--KKEIRRAAVN 947 (1172)
T ss_pred ccccCCChhhhcccchHhhh--hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHH--HHHHHHHHHh
Confidence 1110011267899999998 7789999999999999999988752 22222 233577888887 3678888877
Q ss_pred HHHHhhh-cCccchHHHHhccccccHHHHhhh
Q 010533 468 MIRNLVA-RNPENSFCSVMVSRNLSDRQRRTT 498 (508)
Q Consensus 468 aL~nL~~-~~~e~~~~~~~~g~~~~~~~~~~~ 498 (508)
-+..++. -.|.-.-..+-.|-.+..||.|+-
T Consensus 948 TfG~IakaIGPqdVLatLlnnLkvqeRq~Rvc 979 (1172)
T KOG0213|consen 948 TFGYIAKAIGPQDVLATLLNNLKVQERQNRVC 979 (1172)
T ss_pred hhhHHHHhcCHHHHHHHHHhcchHHHHHhchh
Confidence 7766653 235444455555778888888864
No 91
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.88 E-value=0.84 Score=51.62 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=101.7
Q ss_pred HHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHH--HHHHHHhccC
Q 010533 336 ALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMD--KLIVVSARFS 412 (508)
Q Consensus 336 aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~--~Lv~lL~~~~ 412 (508)
+||++.. ++++|+.+.+.||+..+.+++... +.. ++...+++.|.+++...+.+.......-+. .+-.++.+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~--~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~-w 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNE--ELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNK-W 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cch--hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-c
Confidence 7888887 779999999999999999999976 443 899999999999986554433322222222 33334443 3
Q ss_pred CCHHHHHHHHHHHHHHhcCChh---------hHHHHHh--------------cCcHHH-HHHHHHcCCCcHHHHHHHHHH
Q 010533 413 DDASVLQEVMSIITVLSLRSPE---------NAARAME--------------AGSGDL-AIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~---------~~~~i~~--------------~G~i~~-Lv~~L~~h~~~~~vq~~A~~a 468 (508)
++...--.+++.|+.+..+.++ ....+++ .....+ +..++. .+..++.+-.|.|+
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~-~s~~~g~~lWal~t 648 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR-LSKSDGSQLWALWT 648 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc-ccCCCchHHHHHHH
Confidence 4446778899999998865321 0111111 111233 545554 34567788999999
Q ss_pred HHHhhhcCccchHHHHhcccc
Q 010533 469 IRNLVARNPENSFCSVMVSRN 489 (508)
Q Consensus 469 L~nL~~~~~e~~~~~~~~g~~ 489 (508)
+.|++..++++++.+...|..
T Consensus 649 i~~~~~~~~~~~~~~~~~~~~ 669 (699)
T KOG3665|consen 649 IKNVLEQNKEYCKLVRESNGF 669 (699)
T ss_pred HHHHHHcChhhhhhhHhccch
Confidence 999999999988888877753
No 92
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=2.8 Score=46.97 Aligned_cols=241 Identities=10% Similarity=0.100 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~ 310 (508)
.+..+++.|+.+|+......+.|-+.+ ++..|..++....+.++++=...+-.| .|.|... -..+.|-.-.|++
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL-~DpD~SI-krralELs~~lvn 379 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECL-KDPDVSI-KRRALELSYALVN 379 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHh-cCCcHHH-HHHHHHHHHHHhc
Confidence 467888889998888766666554432 455666666655444555433223222 1222100 0111222222221
Q ss_pred cC----CHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533 311 IG----IARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (508)
Q Consensus 311 ~g----~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~ 384 (508)
.. .+.-|+..|.+. +++...+.+..+..++. .+++... |+.+++.+....+..+.++..+.+.+|.+
T Consensus 380 ~~Nv~~mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~ 452 (866)
T KOG1062|consen 380 ESNVRVMVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIAN 452 (866)
T ss_pred cccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhc
Confidence 11 235566666665 66677777766666664 3343332 35566666654443344566665555554
Q ss_pred hhCCchhHHHHHhCCcHHHHHHHHhc----cCCCHHHHHHHHHHHHHHh---cCC--hhhHHHHHhcCcHHHHHHHHHcC
Q 010533 385 LAGSDSNKSAIIENGGMDKLIVVSAR----FSDDASVLQEVMSIITVLS---LRS--PENAARAMEAGSGDLAIQAMLKF 455 (508)
Q Consensus 385 La~~~~~k~~Iv~~Ggl~~Lv~lL~~----~~~~~~v~e~a~~aL~~La---~~~--~~~~~~i~~~G~i~~Lv~~L~~h 455 (508)
=. .+....++.+ |...+.. ..+.+.++.-+.|+|..-. ... .+--..+-+..++..|.+++..|
T Consensus 453 ~~-~e~~~y~~~r------Ly~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~ 525 (866)
T KOG1062|consen 453 AF-QELHEYAVLR------LYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH 525 (866)
T ss_pred CC-cchhhHHHHH------HHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc
Confidence 21 2222222221 1111110 1345667778888887532 110 11111233455678888999999
Q ss_pred CCcHHHHHHHHHHHHHhhhc----CccchHHHHhcccccc
Q 010533 456 PNAQQLQRSSCFMIRNLVAR----NPENSFCSVMVSRNLS 491 (508)
Q Consensus 456 ~~~~~vq~~A~~aL~nL~~~----~~e~~~~~~~~g~~~~ 491 (508)
..+..++..|..||..|.+| +++.++.+..-++++.
T Consensus 526 ~s~~~tk~yal~Al~KLSsr~~s~~~ri~~lI~~~~~s~~ 565 (866)
T KOG1062|consen 526 SSDSTTKGYALTALLKLSSRFHSSSERIKQLISSYKSSLD 565 (866)
T ss_pred cchHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhccccc
Confidence 88888888899999999876 3456666666676554
No 93
>PRK14707 hypothetical protein; Provisional
Probab=95.66 E-value=3.5 Score=50.79 Aligned_cols=236 Identities=13% Similarity=0.113 Sum_probs=136.5
Q ss_pred CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHH-HhcCCCcc
Q 010533 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIR-VLLTPDDD 294 (508)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~-~L~~~dd~ 294 (508)
..+...+.-|.... +..+-..+...|..-..++..-++.+ +.-.+..++..|..=.+ .+=+.|+.+|- .|+-+++-
T Consensus 289 q~vanalNalSKwp-d~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l 366 (2710)
T PRK14707 289 INVTQALNALSKWA-DLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPEL 366 (2710)
T ss_pred HHHHHHHhhhhcCC-CchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhh
Confidence 34555555665543 44444444444444334444444433 22344555566655322 33333433333 34433322
Q ss_pred hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH-HhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHH
Q 010533 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKT 373 (508)
Q Consensus 295 r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~-~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~ 373 (508)
+. . .+.-++..+++.|.+-++..+-..++.+|. .|..+.+.++.+- .-||.-+++.|..-+|. .
T Consensus 367 ~~----------~-l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~-~Q~van~lnalsKWPd~---~ 431 (2710)
T PRK14707 367 RK----------D-LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD-PQGVSNALNALAKWPDL---P 431 (2710)
T ss_pred hc----------c-cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc-hhhHHHHHHHhhcCCcc---h
Confidence 11 1 123467788888888777656666666664 4555666666554 44678888999988765 6
Q ss_pred HHHHHHHHHHH-hhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHH-HHhcCChhhHHHHHhcCcHHHHHHH
Q 010533 374 VARICCSLLSK-LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIIT-VLSLRSPENAARAMEAGSGDLAIQA 451 (508)
Q Consensus 374 v~~~al~aL~~-La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~-~La~~~~~~~~~i~~~G~i~~Lv~~ 451 (508)
+...+...|.. ++.+.+.+..+ +.-.|.-.+..+.++++++ +...+...|+ .|+ ++++.++.+--. .+..-+..
T Consensus 432 ~C~~aa~~lA~~la~d~~l~~~~-~p~~va~~LnalSKWPd~p-~c~~aa~~La~~l~-~~~~l~~a~~~q-~~~~~L~a 507 (2710)
T PRK14707 432 ICGQAVSALAGRLAHDTELCKAL-DPINVTQALDALSKWPDTP-ICGQTASALAARLA-HERRLRKALKPQ-EVVIALHS 507 (2710)
T ss_pred hHHHHHHHHHHHHhccHHHHhhc-ChHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhc-ccHHHHhhcCHH-HHHHHHHH
Confidence 77777777766 45555555554 3334777888888887664 4555555555 455 678876665433 34445577
Q ss_pred HHcCCCcHHHHHHHHHHHHHhh
Q 010533 452 MLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 452 L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
|.++|+.....+.+.|...-+.
T Consensus 508 LSK~Pd~~~c~~A~~~lA~rl~ 529 (2710)
T PRK14707 508 LSKWPDTPICAEAASALAERVV 529 (2710)
T ss_pred hhcCCCcHHHHHHHHHHHHHhc
Confidence 8889987766666666555544
No 94
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.65 E-value=0.096 Score=48.75 Aligned_cols=113 Identities=17% Similarity=0.254 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCCh-hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCC-----CCcHHHHHHHHHHHHHhhC
Q 010533 314 ARALVHSLHAGLSS-PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGL-----QGNKTVARICCSLLSKLAG 387 (508)
Q Consensus 314 i~~Lv~lL~~~~d~-~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~-----~~~~~v~~~al~aL~~La~ 387 (508)
...+++.+++.... ..+......|++ ..-...+.+++.||+..|+++|..... ..+.++...++.+|+.|..
T Consensus 68 p~~~i~~L~~~~~~~~~L~~L~v~Lrt--~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTSKILKSLRVSLRT--NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HHHHHHHHHHHHHH--S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcc--CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 45566666654422 333333333322 123567889999999999998874321 1234788999999999999
Q ss_pred CchhHHHHHh-CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 388 SDSNKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 388 ~~~~k~~Iv~-~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+..+...+++ .+++..|+..|. +.+..++..++-.|+.+|.
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~--s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLD--SPNIKTRKLALEILAALCL 187 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT----TTSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCcHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHC
Confidence 8888888876 567899999998 7889999999999999983
No 95
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=0.79 Score=52.51 Aligned_cols=245 Identities=11% Similarity=0.042 Sum_probs=148.6
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHH-HhcCChHHHHHHHhcCCCCHHHHH-HHHHHHHHhhcCChh
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILN-SGFAVVAASATGNEV 252 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~-~a~~~L~~l~~~~e~ 252 (508)
+|+.++.|-+ +-....||..|+-.++--.=-..+ +.-|.-|.+++||.+. -.++.- .++-|-.-+ .-++.
T Consensus 474 LPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~--a~ELrpiLVFIWAKIL-AvD~S 545 (1387)
T KOG1517|consen 474 LPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS--ARELRPILVFIWAKIL-AVDPS 545 (1387)
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc--hHhhhhhHHHHHHHHH-hcCch
Confidence 5666665543 233455666666665422100122 2346789999999854 233332 222222223 33466
Q ss_pred hHHHHHHcCcHHHHHHHHhcCCh--HHHHH-HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhH
Q 010533 253 VKESYMELKIDELILEILSRQRN--DSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (508)
Q Consensus 253 nr~~i~~~G~i~~Lv~lL~~~~~--~~~~~-A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~ 329 (508)
+...+++.+|-...+.+|..... ..++. |+-.|..++.+- ..| .+...+.+.|..-+..|.+...+=+
T Consensus 546 CQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf----~lG-----Q~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 546 CQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF----KLG-----QKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred hHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc----chh-----HHHhccccHHHHHHHHhcCCccHHH
Confidence 66778888888888888876322 24444 555566665431 111 1222245667767777776433434
Q ss_pred HHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-----CchhHHHH--------
Q 010533 330 LISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-----SDSNKSAI-------- 395 (508)
Q Consensus 330 ~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-----~~~~k~~I-------- 395 (508)
+.=+|.+|+.|-.+ ++..-.=++.++.+.|+.+|.+. -++|..+|+.+|+.+-+ .++.+..+
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~----vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~ 692 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP----VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDD 692 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc----cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchh
Confidence 45677889999874 55555666888999999999863 34899999999999865 34444333
Q ss_pred ----HhCCc---HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 010533 396 ----IENGG---MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA 442 (508)
Q Consensus 396 ----v~~Gg---l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~ 442 (508)
++.-. .-.++.+++ -+++-++.+.+-+|+.+..++..+...+.-.
T Consensus 693 ~~~~~E~~i~~~~~~ll~~vs--dgsplvr~ev~v~ls~~~~g~~~~~~~va~n 744 (1387)
T KOG1517|consen 693 ERTSIEDLIIKGLMSLLALVS--DGSPLVRTEVVVALSHFVVGYVSHLKVVAGN 744 (1387)
T ss_pred hhhhHHHHHHhhHHHHHHHHh--ccchHHHHHHHHHHHHHHHhhHHHhHHHhhh
Confidence 11111 125555665 4568888889999999998887766655543
No 96
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.088 Score=55.93 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=116.1
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (508)
Q Consensus 252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~ 331 (508)
.-|.-+.++.+.++|+++|..+...+..-+...++|+.. +|+. -...+.+.|.|..|++++.+. |..++.
T Consensus 422 ~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv------~fsn---L~~~fL~~~iIdvl~~~v~sK-DdaLqa 491 (743)
T COG5369 422 FLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVV------PFSN---LGAGFLEKSIIDVLVNLVMSK-DDALQA 491 (743)
T ss_pred HHHhhccccchHHHHHHHhcCccceeeccchhhhhheee------eccc---hHHHHHHhhHHHHHHHHhhcc-hhhhhh
Confidence 346666677889999999987544333334555666553 2221 112345789999999999864 667889
Q ss_pred HHHHHHHHhhcChhh--HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC----CchhHHHHHhCCcH----
Q 010533 332 SASIALKAVAVNDEI--CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG----SDSNKSAIIENGGM---- 401 (508)
Q Consensus 332 ~a~~aL~~La~~~e~--~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~----~~~~k~~Iv~~Ggl---- 401 (508)
+..|.|..+.-+..+ +-.....-|+..++++..+. ...|+++++.+|+|+.- |+.-++...+..-.
T Consensus 492 ns~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp----c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 492 NSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP----CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred cchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc----ccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 999999998875432 33455566788888887653 35899999999999853 23344444444333
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 010533 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (508)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~ 441 (508)
..|++-|+ ..+|-..+..|-.|.++++-+.....-+.+
T Consensus 568 k~l~~k~e--~~np~~i~~~~yilv~~aa~d~~l~~~V~~ 605 (743)
T COG5369 568 KRLIDKYE--ENNPMEILEGCYILVRNAACDDTLDYIVQS 605 (743)
T ss_pred HHHHHHHH--hcCchhhhhhHHHHHHHHhccchHHHHHHh
Confidence 34555565 556777778899999998766554444443
No 97
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.53 E-value=1.2 Score=48.30 Aligned_cols=205 Identities=15% Similarity=0.155 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchhHHH-----hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh---HHHHHH
Q 010533 188 GSKRVLDSCLKTMALLVHDVQSTETFR-----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYME 259 (508)
Q Consensus 188 ~~~~~~~~al~aLa~l~~~~~~~~~i~-----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n---r~~i~~ 259 (508)
..++++-..++++.++.+-. .+. -.|.+|.|.-+|++ .+.++++.++..++.+|...++. |+ .|.
T Consensus 658 ~ypEvLgsil~Ai~~I~sv~----~~~~mqpPi~~ilP~ltPILrn--kh~Kv~~nti~lvg~I~~~~peyi~~rE-WMR 730 (975)
T COG5181 658 DYPEVLGSILKAICSIYSVH----RFRSMQPPISGILPSLTPILRN--KHQKVVANTIALVGTICMNSPEYIGVRE-WMR 730 (975)
T ss_pred ccHHHHHHHHHHHHHHhhhh----cccccCCchhhccccccHhhhh--hhHHHhhhHHHHHHHHHhcCcccCCHHH-HHH
Confidence 57888888888888776532 222 24678999999984 46899999999999998766542 22 221
Q ss_pred cCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010533 260 LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (508)
Q Consensus 260 ~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~ 339 (508)
+.--|++.|++.+.++.++|..++..++. .|.-...+..|++-|+. .+-+..+|.+++
T Consensus 731 --IcfeLvd~Lks~nKeiRR~A~~tfG~Is~----------------aiGPqdvL~~LlnnLkv---qeRq~Rvctsva- 788 (975)
T COG5181 731 --ICFELVDSLKSWNKEIRRNATETFGCISR----------------AIGPQDVLDILLNNLKV---QERQQRVCTSVA- 788 (975)
T ss_pred --HHHHHHHHHHHhhHHHHHhhhhhhhhHHh----------------hcCHHHHHHHHHhcchH---HHHHhhhhhhhh-
Confidence 23347889999888999999988887762 23222334444444443 223345555432
Q ss_pred hhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHH
Q 010533 340 VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASV 417 (508)
Q Consensus 340 La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v 417 (508)
++.--+. +|-..+|=.+|.+. +.++..|+.-.+.++.-+-. ....++-|- -..|.|-++|. ..++.-
T Consensus 789 I~iVae~------cgpfsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAlt--DrD~vh 857 (975)
T COG5181 789 ISIVAEY------CGPFSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALT--DRDPVH 857 (975)
T ss_pred hhhhHhh------cCchhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhc--ccchHH
Confidence 1111122 23334444456553 34455666655555544431 222333332 24577777887 556777
Q ss_pred HHHHHHHHHHHhcCC
Q 010533 418 LQEVMSIITVLSLRS 432 (508)
Q Consensus 418 ~e~a~~aL~~La~~~ 432 (508)
+.-|..++.+|+++-
T Consensus 858 Rqta~nvI~Hl~Lnc 872 (975)
T COG5181 858 RQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHHhcCC
Confidence 778888888888753
No 98
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.51 E-value=2.5 Score=46.94 Aligned_cols=222 Identities=18% Similarity=0.197 Sum_probs=133.6
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchhHHH-hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh---HHHHHHcCcH
Q 010533 188 GSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELKID 263 (508)
Q Consensus 188 ~~~~~~~~al~aLa~l~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n---r~~i~~~G~i 263 (508)
..++++-..+++|.++.+-..-...+. -.+.+|.|.-+|++ .+.+|++.++..++.+|...++. |+ .|. +.
T Consensus 853 eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn--rheKVqen~IdLvg~IadrgpE~v~aRE-WMR--Ic 927 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIADRGPEYVSARE-WMR--IC 927 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHHhcCcccCCHHH-HHH--HH
Confidence 467887777777777665221000111 24568888889974 46899999999999998655442 22 221 23
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 010533 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (508)
Q Consensus 264 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~ 343 (508)
--|+++|++++.++.++|..++..++. .|.-...+..|++-|+. .+-+..+|.+++ ++.-
T Consensus 928 feLlelLkahkK~iRRaa~nTfG~Iak----------------aIGPqdVLatLlnnLkv---qeRq~RvcTtva-IaIV 987 (1172)
T KOG0213|consen 928 FELLELLKAHKKEIRRAAVNTFGYIAK----------------AIGPQDVLATLLNNLKV---QERQNRVCTTVA-IAIV 987 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH----------------hcCHHHHHHHHHhcchH---HHHHhchhhhhh-hhhh
Confidence 347789999888999999988887652 23222334444444432 223445666542 2222
Q ss_pred hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533 344 DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421 (508)
Q Consensus 344 ~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a 421 (508)
-|.| |-..+|=.+|.+. .-++..|+.-.+.+|+-+-. ....++-|- -..|.|-++|. ..++.-+.-|
T Consensus 988 aE~c------~pFtVLPalmneY-rtPe~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlm--DrD~vhRqta 1056 (1172)
T KOG0213|consen 988 AETC------GPFTVLPALMNEY-RTPEANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALM--DRDLVHRQTA 1056 (1172)
T ss_pred hhhc------CchhhhHHHHhhc-cCchhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhc--cccHHHHHHH
Confidence 2333 2233344455543 33445677766666665542 334455554 25688888887 5567778889
Q ss_pred HHHHHHHhcCChhhHHHHHhcCcHHHHHHHH
Q 010533 422 MSIITVLSLRSPENAARAMEAGSGDLAIQAM 452 (508)
Q Consensus 422 ~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L 452 (508)
+.++.+|+++-+ ..|..+.++.+|
T Consensus 1057 ~~~I~Hl~Lg~~-------g~g~eda~iHLL 1080 (1172)
T KOG0213|consen 1057 MNVIKHLALGVP-------GTGCEDALIHLL 1080 (1172)
T ss_pred HHHHHHHhcCCC-------CcCcHHHHHHHH
Confidence 999999998633 245666666665
No 99
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=5.7 Score=44.63 Aligned_cols=321 Identities=15% Similarity=0.141 Sum_probs=176.5
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHH--hhcccc--CCCc-----cccCCCCCC-----------CCCChHHH-HHHHHHH
Q 010533 71 EVVKENMEDLGMEPTEALQDAIQTL--SLQGVD--LSGI-----VKCVPGESS-----------LKDNPLIQ-SLERLKQ 129 (508)
Q Consensus 71 ~~v~eni~~~~m~p~eal~~aI~q~--~~qgvd--Ls~i-----~~~~~~~~~-----------~~~~~v~~-~l~~L~~ 129 (508)
+.+|.++.+=.-++..=-+..++-+ ..-|.+ ++.| +-+..-... +++|.+.. ....|+.
T Consensus 35 a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslkn 114 (866)
T KOG1062|consen 35 AAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKN 114 (866)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHh
Confidence 3455566665555555555655552 666765 2222 111100000 13344443 4445555
Q ss_pred HhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc
Q 010533 130 LDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS 209 (508)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~ 209 (508)
-|.++ +.-.+.-||..|..+|+. +- + .+..|-+.++|+.. ++-++.+|+-+..-+....++
T Consensus 115 DL~s~-------nq~vVglAL~alg~i~s~----Em---a--rdlapeVe~Ll~~~---~~~irKKA~Lca~r~irK~P~ 175 (866)
T KOG1062|consen 115 DLNSS-------NQYVVGLALCALGNICSP----EM---A--RDLAPEVERLLQHR---DPYIRKKAALCAVRFIRKVPD 175 (866)
T ss_pred hccCC-------CeeehHHHHHHhhccCCH----HH---h--HHhhHHHHHHHhCC---CHHHHHHHHHHHHHHHHcCch
Confidence 55554 777788899999999963 21 1 23578888899883 677777776666555443221
Q ss_pred hhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC-----Ch---------
Q 010533 210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----RN--------- 275 (508)
Q Consensus 210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~-----~~--------- 275 (508)
.+ +--++..-++|.. .+..|...++..+..+|..++++-..+.+ .++-+|..|+.- +.
T Consensus 176 ---l~-e~f~~~~~~lL~e--k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~d 247 (866)
T KOG1062|consen 176 ---LV-EHFVIAFRKLLCE--KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISD 247 (866)
T ss_pred ---HH-HHhhHHHHHHHhh--cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCc
Confidence 11 1123334445542 34667777778888888877766666555 677777777641 10
Q ss_pred -HHHHHHHHHHHHhcCCCcchhhh--------------hhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010533 276 -DSIQSLYDAIRVLLTPDDDQVVA--------------SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (508)
Q Consensus 276 -~~~~~A~~aL~~L~~~dd~r~~~--------------~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L 340 (508)
-.+-...+.|+-|-.+|....+. ++...|+- +. .++..++.+. ++..++.-+...|+..
T Consensus 248 PFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI-LY--E~V~TI~~I~---~~~~LrvlainiLgkF 321 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI-LY--ECVRTIMDIR---SNSGLRVLAINILGKF 321 (866)
T ss_pred hHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH-HH--HHHHHHHhcc---CCchHHHHHHHHHHHH
Confidence 23444666677666555332110 00011111 00 1233333332 2345666677777665
Q ss_pred hcCh-hhHhHHhhcCC-----------H----HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHH
Q 010533 341 AVND-EICKSVAENGG-----------I----DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKL 404 (508)
Q Consensus 341 a~~~-e~~~~i~e~Gg-----------i----~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~L 404 (508)
-.++ .|.+.+. ..+ + ..++++|++. |..+.+.|+.++-.|. ++.|...+++ -|
T Consensus 322 L~n~d~NirYva-Ln~L~r~V~~d~~avqrHr~tIleCL~Dp----D~SIkrralELs~~lv-n~~Nv~~mv~-----eL 390 (866)
T KOG1062|consen 322 LLNRDNNIRYVA-LNMLLRVVQQDPTAVQRHRSTILECLKDP----DVSIKRRALELSYALV-NESNVRVMVK-----EL 390 (866)
T ss_pred hcCCccceeeee-hhhHHhhhcCCcHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHh-ccccHHHHHH-----HH
Confidence 5433 3333221 111 1 2356677652 4589999999988876 4455555543 67
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHH
Q 010533 405 IVVSARFSDDASVLQEVMSIITVLSLR-SPENAA 437 (508)
Q Consensus 405 v~lL~~~~~~~~v~e~a~~aL~~La~~-~~~~~~ 437 (508)
+..|. +.++..+....+-+..++.+ .|++++
T Consensus 391 l~fL~--~~d~~~k~~~as~I~~laEkfaP~k~W 422 (866)
T KOG1062|consen 391 LEFLE--SSDEDFKADIASKIAELAEKFAPDKRW 422 (866)
T ss_pred HHHHH--hccHHHHHHHHHHHHHHHHhcCCcchh
Confidence 88887 55788888888888888743 345444
No 100
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=3.4 Score=41.50 Aligned_cols=265 Identities=10% Similarity=0.121 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHH-HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~-~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~ 220 (508)
.+.-...|...+..+... ..+.+.. +.-.++.|.+++...+ + ...|..+|.++..+..-+..+++. -+.
T Consensus 16 sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~---~--~~~a~~alVnlsq~~~l~~~ll~~-~~k 85 (353)
T KOG2973|consen 16 SPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD---P--AEPAATALVNLSQKEELRKKLLQD-LLK 85 (353)
T ss_pred ChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc---c--ccHHHHHHHHHHhhHHHHHHHHHH-HHH
Confidence 344444455555555432 1111111 1234666777765532 1 334556677776665555555555 444
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHH------cCcHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCC
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME------LKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD 292 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~------~G~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~d 292 (508)
.++..+.. ....+....|.++.|++.........+.. .|.+.........+.+ .-....+-.+.+|+...
T Consensus 86 ~l~~~~~~--p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~ 163 (353)
T KOG2973|consen 86 VLMDMLTD--PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFE 163 (353)
T ss_pred HHHHHhcC--cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhh
Confidence 45554432 22456667777888886655544444332 3344444444443322 22334455666776433
Q ss_pred cchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC--ChhHH-HHHHHHHHHhhcChhhHhHHhhcCCHHHHH--------
Q 010533 293 DDQVVASQVYGYARRFA-KIGIARALVHSLHAGL--SSPSL-ISASIALKAVAVNDEICKSVAENGGIDALL-------- 360 (508)
Q Consensus 293 d~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~--d~~~~-~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv-------- 360 (508)
.. |.+. +... .+.+.|..++ +..+. ..++++|.|.+....+...+.+ -++..|-
T Consensus 164 ~g-----------R~l~~~~k~--~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlag 229 (353)
T KOG2973|consen 164 AG-----------RKLLLEPKR--FPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAG 229 (353)
T ss_pred hh-----------hhHhcchhh--hhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCC
Confidence 22 2232 2221 1112222222 22222 3455666666666555555544 2333222
Q ss_pred ----------------HHHhccC-CCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHH
Q 010533 361 ----------------RCIDDSG-LQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS 423 (508)
Q Consensus 361 ----------------~lL~~~~-~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~ 423 (508)
++|.... ..+++++.+.-+.+|-.|+....+|+.+.+ -|+.++++-+..+..++.+.+.+-.
T Consensus 230 pee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~ 308 (353)
T KOG2973|consen 230 PEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS-KGVYPILRELHKWEEDEDIREACEQ 308 (353)
T ss_pred ccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHH
Confidence 3333111 123679999999999999988888887766 4577888888888888888777666
Q ss_pred HHHHHhcCCh
Q 010533 424 IITVLSLRSP 433 (508)
Q Consensus 424 aL~~La~~~~ 433 (508)
..-.|....|
T Consensus 309 vvq~Lv~~e~ 318 (353)
T KOG2973|consen 309 VVQMLVRLEP 318 (353)
T ss_pred HHHHHHhccc
Confidence 6666654444
No 101
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.35 E-value=0.2 Score=49.30 Aligned_cols=101 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH
Q 010533 373 TVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA 451 (508)
Q Consensus 373 ~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~ 451 (508)
.++..|+.+|.-++ -++..+....+..++..|+++|. ....+.++-.++-+|..+...+|.|.+.+-+.+|+..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~-~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLS-PSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhc-cCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 45667788888887 48999999999999999999995 24568999999999999999999999999999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHhhh
Q 010533 452 MLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 452 L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
++..+.+..++-+...-|.-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 98877777787777666655444
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.32 E-value=0.15 Score=48.99 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=96.3
Q ss_pred CCHHHHHHHHHHHHHhhcCC--hhhHHHHHHc--CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533 231 EDPEILNSGFAVVAASATGN--EVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~--e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~ 306 (508)
.+=+.+..++.-|..++.++ ......+.+. ..+..++..+.+....+.+.||.++..|+..-. ...+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~------~~~~--- 89 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG------SHFE--- 89 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG------GGGH---
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh------HhHH---
Confidence 34556667777777776655 3334444321 344555555554344688899999988874221 1111
Q ss_pred HHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (508)
Q Consensus 307 ~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La 386 (508)
.+++ ..+|.|+..+.+. ...+...+..+|..+...-.... ..+...+.....+.++.+...++..|..+.
T Consensus 90 ~~~~-~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~--------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 90 PYAD-ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP--------KILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHH-HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1111 3478888887764 34456667677766665422111 222344443334456789999999998875
Q ss_pred C-CchhHHHHHh----CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533 387 G-SDSNKSAIIE----NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM 440 (508)
Q Consensus 387 ~-~~~~k~~Iv~----~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~ 440 (508)
. .+.....+-. ...++.+...+. ..++.|++.|-.++..+...-|+....+.
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 3 3311121211 124566666676 66799999999999999765555544443
No 103
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.31 E-value=2.3 Score=44.34 Aligned_cols=286 Identities=17% Similarity=0.171 Sum_probs=144.7
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr 254 (508)
|..+++=+.+. ....+++.++-.|+.-+.+.+=+..|+..|....+++.+....++. +...++.++..+...+..+-
T Consensus 23 v~ylld~l~~~--~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~-~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLESS--SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDD-ILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcccC--CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchH-HHHHHHHHHHHHHccCCcch
Confidence 44555545532 3446676666667766665555678888999999999996544433 44444444444333333333
Q ss_pred HHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc---C-----C
Q 010533 255 ESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA---G-----L 325 (508)
Q Consensus 255 ~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~---~-----~ 325 (508)
..+-..+....++.++..... ....... .. .+. +.....+ +.+..+...+.. . .
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-~~--------~~~-------~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD-SS--------RKK-------NLSKVQQ-KSRSLCKELLSSGSSWKSPKPP 162 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh-hh--------hhh-------hhhHHHH-HHHHHHHHHHhccccccccCCc
Confidence 333355666776777761100 0000000 00 000 0000000 011111111100 0 0
Q ss_pred ChhHHHHHHHHHHHh--------------h-cChhhHhHHhhcCCHHHHHHHHhc----c-----CCCC---cHHHHHHH
Q 010533 326 SSPSLISASIALKAV--------------A-VNDEICKSVAENGGIDALLRCIDD----S-----GLQG---NKTVARIC 378 (508)
Q Consensus 326 d~~~~~~a~~aL~~L--------------a-~~~e~~~~i~e~Ggi~~Lv~lL~~----~-----~~~~---~~~v~~~a 378 (508)
.-+.+.-+..++-.+ . ..+-++..+.+.||++.+++.+.+ . .+.+ +......+
T Consensus 163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~c 242 (361)
T PF07814_consen 163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERC 242 (361)
T ss_pred ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHH
Confidence 000111111122112 1 123457788889999999999862 1 0011 23456678
Q ss_pred HHHHHHhh-CCchhHHHHHhCC--cHHHHHH-HHhcc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH---HHH
Q 010533 379 CSLLSKLA-GSDSNKSAIIENG--GMDKLIV-VSARF-SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDL---AIQ 450 (508)
Q Consensus 379 l~aL~~La-~~~~~k~~Iv~~G--gl~~Lv~-lL~~~-~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~---Lv~ 450 (508)
+.+|.+.+ .+++|...++... .++.+.. ++... .....++..++..|.||+-+||+.+..+...+.+.. +..
T Consensus 243 l~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~ 322 (361)
T PF07814_consen 243 LSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVT 322 (361)
T ss_pred HHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHH
Confidence 88888876 4778887776542 2333333 33321 112345678999999999999988888876643322 222
Q ss_pred HHHcC-------C--CcHHHHHHHHHHHHHhhhcCccch
Q 010533 451 AMLKF-------P--NAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 451 ~L~~h-------~--~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
.+..- + ..-+..--+..++.||+.+++.+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~nR 361 (361)
T PF07814_consen 323 SFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEANR 361 (361)
T ss_pred hhcccccccccccccccchHHHHHHHhHHHheeeCccCC
Confidence 22110 0 111223346778889988877664
No 104
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.28 E-value=2.3 Score=42.92 Aligned_cols=220 Identities=12% Similarity=0.149 Sum_probs=136.0
Q ss_pred HHHHHHHhhcCCcchh-HHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcC
Q 010533 196 CLKTMALLVHDVQSTE-TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQ 273 (508)
Q Consensus 196 al~aLa~l~~~~~~~~-~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~ 273 (508)
|...+..+.-+.+-|. .+.+...-..++++|+.+-.+.++|-..+-+++-+. -+....+.|-+. ..+..|+.+.+..
T Consensus 169 av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lT-f~~~~aqdi~K~~dli~dli~iVk~~ 247 (432)
T COG5231 169 AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILT-FSKECAQDIDKMDDLINDLIAIVKER 247 (432)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443 334555778899999988888999999988888774 444444444332 5677778888764
Q ss_pred Ch-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHHHHHH---HH----HHhhcC
Q 010533 274 RN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLISASI---AL----KAVAVN 343 (508)
Q Consensus 274 ~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~~a~~---aL----~~La~~ 343 (508)
.. .+.+-.|+.+.+++. ..+ .++...+.-.|-+.+-+++|.... |.++..+.-. .| ..|+..
T Consensus 248 ~keKV~Rlc~~Iv~n~~d-K~p-------K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 248 AKEKVLRLCCGIVANVLD-KSP-------KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHhc-ccc-------cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 33 677888888888873 221 124445554454555555555433 4444332211 11 111111
Q ss_pred h------------------------hhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHH
Q 010533 344 D------------------------EICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAII 396 (508)
Q Consensus 344 ~------------------------e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv 396 (508)
+ .|...+.+.. .++.|..+++...+ + -...-||.=|..+. ..|+....+.
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~--n-t~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNP--N-TWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCC--C-ceEeeeHhhHHHHHHhCchHHHHHH
Confidence 1 2223333222 35677788876433 2 24445666666665 5789999999
Q ss_pred hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+.||=+.++++|+ .+++.|+-+|..++-.+.
T Consensus 397 Kyg~k~~im~L~n--h~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLIN--HDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhc--CCCchhhHHHHHHHHHHH
Confidence 9999999999998 678999999999987664
No 105
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=2.9 Score=48.17 Aligned_cols=265 Identities=15% Similarity=0.152 Sum_probs=156.6
Q ss_pred HHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC-
Q 010533 151 DKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG- 229 (508)
Q Consensus 151 ~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~- 229 (508)
.-|.-+.++ +.+|...+.++.++..++.++-+ .+.....+..+..|....+ .-+...-+..+|+.|+++
T Consensus 664 DcLisllKn--nteNqklFreanGvklilpflin-----dehRSslLrivscLitvdp---kqvhhqelmalVdtLksgm 733 (2799)
T KOG1788|consen 664 DCLISLLKN--NTENQKLFREANGVKLILPFLIN-----DEHRSSLLRIVSCLITVDP---KQVHHQELMALVDTLKSGM 733 (2799)
T ss_pred HHHHHHHhc--cchhhHHHHhhcCceEEEEeeec-----hHHHHHHHHHHHHHhccCc---ccccHHHHHHHHHHHHhcc
Confidence 345556676 88899999999999888887743 2334444566666654331 222233355667777652
Q ss_pred ----CC-C----HHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh--------------HHHHHHHHHHH
Q 010533 230 ----NE-D----PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------------DSIQSLYDAIR 286 (508)
Q Consensus 230 ----~~-~----~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~--------------~~~~~A~~aL~ 286 (508)
+. + -...+..+.+++.+..-+-..+..|.++||...|...|..... +....... ++
T Consensus 734 vt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFr-lf 812 (2799)
T KOG1788|consen 734 VTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFR-LF 812 (2799)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHH-HH
Confidence 11 1 2345666788888766666677888999999998888864211 11111111 11
Q ss_pred --HhcCCCcchhhhhh--c-chHHHHHHhcC---------CHHHHHHHHh-cCCChhH--HHHHHHHHHHhhcC------
Q 010533 287 --VLLTPDDDQVVASQ--V-YGYARRFAKIG---------IARALVHSLH-AGLSSPS--LISASIALKAVAVN------ 343 (508)
Q Consensus 287 --~L~~~dd~r~~~~~--a-~~~~~~i~~~g---------~i~~Lv~lL~-~~~d~~~--~~~a~~aL~~La~~------ 343 (508)
.+|.+..+|.-+.. . ......+.+.| .|..|.++-- .-..+.+ -..+|..+..+-.+
T Consensus 813 TlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt 892 (2799)
T KOG1788|consen 813 TLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT 892 (2799)
T ss_pred HHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence 23334334432211 0 01122333455 1222222211 1111111 23566666655322
Q ss_pred -----hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccC-CCHH
Q 010533 344 -----DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFS-DDAS 416 (508)
Q Consensus 344 -----~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~-~~~~ 416 (508)
+..+++|..+|++..|++.+-... +.++-+-+.+|..++. +|.|....-..|+++.|++.+.-+. ++..
T Consensus 893 PsGqfnpdk~~iynagavRvlirslLlny----pK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgssp 968 (2799)
T KOG1788|consen 893 PSGQFNPDKQKIYNAGAVRVLIRSLLLNY----PKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSP 968 (2799)
T ss_pred CCCCcCchHhhhcccchhHHHHHHHHhhC----hHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCch
Confidence 234788999999999998876542 2788899999999985 8889988888999999999886443 2344
Q ss_pred HHHHHHHHHHHHhc
Q 010533 417 VLQEVMSIITVLSL 430 (508)
Q Consensus 417 v~e~a~~aL~~La~ 430 (508)
..-++...+..|+.
T Consensus 969 fLshalkIvemLga 982 (2799)
T KOG1788|consen 969 FLSHALKIVEMLGA 982 (2799)
T ss_pred HhhccHHHHHHHhh
Confidence 55666666666653
No 106
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.17 E-value=0.31 Score=50.96 Aligned_cols=115 Identities=9% Similarity=0.052 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHh-cccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533 143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-KMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (508)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~-~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~ 221 (508)
..-...++..+...-.+ +|..-..+.++|.++.+++.+. ..-.+..+++..--+++.++|=.+...+.+.+.+.++.
T Consensus 123 ~~v~s~a~~ivs~~I~n--ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHN--EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDK 200 (379)
T ss_pred hHHHHHHHHHHHHHHhc--CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHH
Confidence 34445566667777766 7777789999999999999888 55446778887777777777654455688888999999
Q ss_pred HHHHHhcCC-----CCHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 010533 222 LVNILIDGN-----EDPEILNSGFAVVAASATGNEVVKESYME 259 (508)
Q Consensus 222 Lv~lL~~~~-----~~~~v~~~a~~~L~~l~~~~e~nr~~i~~ 259 (508)
+++++.+.. ...+.....-..+-++...|+.-|..+++
T Consensus 201 ~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 201 LFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999875421 01122222223344455667777777665
No 107
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.94 E-value=2 Score=42.17 Aligned_cols=205 Identities=13% Similarity=0.006 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHH-HHhccc--------CCCHHHHHHHHHHHHHhhcCCcchhH
Q 010533 143 LNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCS-ICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTET 212 (508)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~-lL~~~~--------~~~~~~~~~al~aLa~l~~~~~~~~~ 212 (508)
.+.-..|+.+|.+.-.. .+.-.-.+-. -|.+..|++ +.+-++ .....-.++|+..+-.++...+.|..
T Consensus 9 ~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 9 PETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp HHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 33445566666554332 3333223333 566666554 333221 01235577788888888887888999
Q ss_pred HHhcCChHHHHHHHhcCCCC---HHHHHHHHHHHHHhhcC-ChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010533 213 FRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL 288 (508)
Q Consensus 213 i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L 288 (508)
|+++.-+-.|--+|...+.. +.+.-..+.+++.+... +.+.-..+.....+|..++.|..+++-...-|.-.+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999988888888654433 34666778888888653 334455566889999999999987653333344455555
Q ss_pred cCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHh
Q 010533 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA 351 (508)
Q Consensus 289 ~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~ 351 (508)
..+|+.-.-+++..+.--.++ ..+..++.-|....++.+++.+..+-..|+.++..+..+.
T Consensus 167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence 555432222223333322232 3455556555555577899999999999999887776655
No 108
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.13 Score=54.71 Aligned_cols=179 Identities=9% Similarity=0.051 Sum_probs=112.0
Q ss_pred hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcc
Q 010533 215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294 (508)
Q Consensus 215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~ 294 (508)
+....++|+++|.. .+.-+.-.+...+.+....-..-+.-+.+.|.|..|+.++.+.++..+.+..|+|+.+..+++.
T Consensus 429 d~~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 429 DYPIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred ccchHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcc
Confidence 45568889999863 2333334445555555555556677888999999999999987777888899999999988875
Q ss_pred hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc----ChhhHhHHhhcCCH----HHHHHHHhcc
Q 010533 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV----NDEICKSVAENGGI----DALLRCIDDS 366 (508)
Q Consensus 295 r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi----~~Lv~lL~~~ 366 (508)
... -+-+ ..-|+..+++...+ ++-.++..+...|+|+.- +++.+......--- +.|++.++..
T Consensus 507 ~ek-------f~~L-akig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~ 577 (743)
T COG5369 507 NEK-------FKFL-AKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN 577 (743)
T ss_pred hhh-------hhhH-HhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc
Confidence 322 2223 33567888887653 233578888899999864 23334433333222 3344555543
Q ss_pred CCCCcHHHHHHHHHHHHHhhCCchh-HHHHHhCCc-HHHHHHHH
Q 010533 367 GLQGNKTVARICCSLLSKLAGSDSN-KSAIIENGG-MDKLIVVS 408 (508)
Q Consensus 367 ~~~~~~~v~~~al~aL~~La~~~~~-k~~Iv~~Gg-l~~Lv~lL 408 (508)
++-...+.|-.|-++|..+++ +..|.+..- +..+.+.|
T Consensus 578 ----np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 578 ----NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred ----CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 224555667777777665554 455554433 34444444
No 109
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.88 E-value=3.8 Score=41.81 Aligned_cols=190 Identities=18% Similarity=0.198 Sum_probs=111.1
Q ss_pred CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (508)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~ 296 (508)
..++.++++|... +..+...+.+.++... ..-+++.|..+|...+..+...|..+|..+-
T Consensus 43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------- 102 (335)
T COG1413 43 EAADELLKLLEDE--DLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG------- 102 (335)
T ss_pred hhHHHHHHHHcCC--CHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------
Confidence 3566777777643 5666666666654431 1125778888888766666666766665432
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCC-------
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ------- 369 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~------- 369 (508)
...++++|+.+|....+..+...+.++|+.+-... ++..++.++.+....
T Consensus 103 -------------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~ 159 (335)
T COG1413 103 -------------DPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALD 159 (335)
T ss_pred -------------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhcc
Confidence 11357888888886445667777878776665432 367777777753210
Q ss_pred -CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 010533 370 -GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLA 448 (508)
Q Consensus 370 -~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~L 448 (508)
....+...+...|..+ ...-.++.++..+. ..+..++..+..+|..+...+ ....+.+
T Consensus 160 ~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~--~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l 218 (335)
T COG1413 160 AALLDVRAAAAEALGEL----------GDPEAIPLLIELLE--DEDADVRRAAASALGQLGSEN---------VEAADLL 218 (335)
T ss_pred chHHHHHHHHHHHHHHc----------CChhhhHHHHHHHh--CchHHHHHHHHHHHHHhhcch---------hhHHHHH
Confidence 0001222222222221 12235677788787 455678888888888887543 2234555
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 449 IQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 449 v~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
...+.. .+..++..++.+|..+
T Consensus 219 ~~~~~~--~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 219 VKALSD--ESLEVRKAALLALGEI 240 (335)
T ss_pred HHHhcC--CCHHHHHHHHHHhccc
Confidence 555532 3456666666666554
No 110
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.88 E-value=1.6 Score=45.76 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhC-CC-CChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHH
Q 010533 146 MMGLFDKLIELCG-GN-EGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKL 221 (508)
Q Consensus 146 ~~~al~~L~~lc~-~~-~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~ 221 (508)
++..++.+..... .. .+..-|. +.+ ......|..++++...-...+...|+..++.+.+..+.. ..+.+.|.++.
T Consensus 77 lK~lLk~l~~~~~~~~~~~~~lrn-l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~ 155 (379)
T PF06025_consen 77 LKSLLKFLSHAMQHSGGFGDRLRN-LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDA 155 (379)
T ss_pred HHHHHHHHHHHhccCCCccccccc-ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHH
Confidence 3444555555555 21 1222222 333 344555666777655456688888999999988765544 56667888899
Q ss_pred HHHHHh-cC-CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC
Q 010533 222 LVNILI-DG-NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ 273 (508)
Q Consensus 222 Lv~lL~-~~-~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~ 273 (508)
+++.+. .. ..+.++....-.++..+|. |....+.+.+.+.++.+++++.+.
T Consensus 156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 156 FLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999887 33 3578888888899999986 566788899999999999999874
No 111
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.72 E-value=2.6 Score=42.96 Aligned_cols=187 Identities=17% Similarity=0.195 Sum_probs=115.6
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~ 252 (508)
-.++.++.++.+. +..+...+...+..+- ....++.+.++|.. .+..++..+..+|+.+ +++
T Consensus 43 ~~~~~~~~~l~~~---~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d--~~~~vr~~a~~aLg~~--~~~- 104 (335)
T COG1413 43 EAADELLKLLEDE---DLLVRLSAAVALGELG----------SEEAVPLLRELLSD--EDPRVRDAAADALGEL--GDP- 104 (335)
T ss_pred hhHHHHHHHHcCC---CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcC--CCHHHHHHHHHHHHcc--CCh-
Confidence 4677888888773 5566655555544322 23367888888863 4678888888877664 222
Q ss_pred hHHHHHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh----
Q 010533 253 VKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS---- 327 (508)
Q Consensus 253 nr~~i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~---- 327 (508)
-.++.|+..|.. ++..+...+.++|..+- ...++.+|+..+......
T Consensus 105 --------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--------------------~~~a~~~l~~~l~~~~~~~a~~ 156 (335)
T COG1413 105 --------EAVPPLVELLENDENEGVRAAAARALGKLG--------------------DERALDPLLEALQDEDSGSAAA 156 (335)
T ss_pred --------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--------------------chhhhHHHHHHhccchhhhhhh
Confidence 257888899986 44467777888887653 123478888888763211
Q ss_pred -------hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCc
Q 010533 328 -------PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG 400 (508)
Q Consensus 328 -------~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Gg 400 (508)
.+...+..+|+.+ .+.-.++.+...+.+. +..++..+..+|..+.... ...
T Consensus 157 ~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~----~~~vr~~Aa~aL~~~~~~~--------~~~ 214 (335)
T COG1413 157 ALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDE----DADVRRAAASALGQLGSEN--------VEA 214 (335)
T ss_pred hccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCc----hHHHHHHHHHHHHHhhcch--------hhH
Confidence 1112222222222 1223567788888763 2379999999998886543 234
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 401 MDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
.+.+...+. ..+..++..++.+|..+-
T Consensus 215 ~~~l~~~~~--~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 215 ADLLVKALS--DESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHhcccC
Confidence 566777776 556777777777666553
No 112
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.70 E-value=2.3 Score=41.33 Aligned_cols=160 Identities=14% Similarity=0.046 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC---CCCHHHHHHHHHHHHHhhcCChh-hHHHHHHcCcHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---NEDPEILNSGFAVVAASATGNEV-VKESYMELKIDE 264 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---~~~~~v~~~a~~~L~~l~~~~e~-nr~~i~~~G~i~ 264 (508)
..--.++++..+-+++...+.|..|+++...-.+-.+|... ...+-+.-.++.+|+.+...++. .-..+...++||
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 34557788888888888778889999999888888888543 34556777888999988754443 344456889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh
Q 010533 265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND 344 (508)
Q Consensus 265 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~ 344 (508)
..++.+..+++....-|.-.+..+..||+.-.=++..+|.--.+. -.+..++.-|.+.+++.++..+..+..+|+.++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~--~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA--LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999998875455455556555555542211112222111111 123334444444456677788888888888777
Q ss_pred hhHhHH
Q 010533 345 EICKSV 350 (508)
Q Consensus 345 e~~~~i 350 (508)
..+..+
T Consensus 250 rar~aL 255 (293)
T KOG3036|consen 250 RARAAL 255 (293)
T ss_pred HHHHHH
Confidence 655543
No 113
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.57 E-value=0.18 Score=48.49 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh-HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~-~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (508)
+..++..+.+- ...+...+|.++..|+..-.. ....++ ..++.|++.+.+. +..+...|-.+|..+..+-...
T Consensus 55 ~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~l~~Ll~~~~~~----~~~i~~~a~~~L~~i~~~~~~~ 128 (228)
T PF12348_consen 55 LDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-ILLPPLLKKLGDS----KKFIREAANNALDAIIESCSYS 128 (228)
T ss_dssp -HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHGGG-------HHHHHHHHHHHHHHHTTS-H-
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHccc----cHHHHHHHHHHHHHHHHHCCcH
Confidence 44555554432 245788999999988863211 222221 2357777777653 3478899999999987643311
Q ss_pred HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----cCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME----AGSGDLAIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~----~G~i~~Lv~~L~~h~~~~~vq~~A~~a 468 (508)
..++ ++.+...+. ..++.++..++..|..+....+.....+-. ...++.+..++.. .++.|++.|-.+
T Consensus 129 ~~~~----~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~~ 200 (228)
T PF12348_consen 129 PKIL----LEILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD--ADPEVREAAREC 200 (228)
T ss_dssp -HHH----HHHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHHH
T ss_pred HHHH----HHHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHHH
Confidence 1111 345555565 568999999999999887665522222222 2245566666643 568898888888
Q ss_pred HHHhhhcCccchHHHH
Q 010533 469 IRNLVARNPENSFCSV 484 (508)
Q Consensus 469 L~nL~~~~~e~~~~~~ 484 (508)
+..+-...|+....++
T Consensus 201 ~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 201 LWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHH-HHH----
T ss_pred HHHHHHHCCHhhccch
Confidence 8888776676666665
No 114
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.9 Score=48.83 Aligned_cols=225 Identities=16% Similarity=0.105 Sum_probs=122.6
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHH
Q 010533 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE 255 (508)
Q Consensus 177 ~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~ 255 (508)
.|...|+. ...+++..|-.+|..++.+-.+.+..++ ..-++.++.-+. ++++.++..|+.||.+....... .
T Consensus 212 GLf~~LsD---~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~--~ 284 (675)
T KOG0212|consen 212 GLFNMLSD---SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGR--D 284 (675)
T ss_pred HHHHHhcC---CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCc--c
Confidence 34444444 3567777777777777654444455544 345677776664 56899999999999987654332 2
Q ss_pred HH-HHcCcHHHHHHHHhcCChH-H---HHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC-CHHHHHHHHhcCCChhH
Q 010533 256 SY-MELKIDELILEILSRQRND-S---IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG-IARALVHSLHAGLSSPS 329 (508)
Q Consensus 256 ~i-~~~G~i~~Lv~lL~~~~~~-~---~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g-~i~~Lv~lL~~~~d~~~ 329 (508)
.+ .-.|++..++..+...... . -+..-..|..+....... . . .+.| .++.|...+... ..+.
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~------~----~-id~~~ii~vl~~~l~~~-~~~t 352 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK------E----E-IDYGSIIEVLTKYLSDD-REET 352 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc------c----c-cchHHHHHHHHHHhhcc-hHHH
Confidence 22 2446666666666554331 1 111222233333211000 0 0 1111 234444444432 1233
Q ss_pred HHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533 330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 330 ~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
...+..-+..|-.+-.+.-........+.|++-|.+..| +|+..++.+|++++.++... +-.+.+.++|+
T Consensus 353 ri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd----~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~ 422 (675)
T KOG0212|consen 353 RIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD----EVVLLALSLLASICSSSNSP------NLRKFLLSLLE 422 (675)
T ss_pred HHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh----HHHHHHHHHHHHHhcCcccc------cHHHHHHHHHH
Confidence 333333233333322222222223345667777876433 89999999999999755443 34677778887
Q ss_pred ccCCCHH-HHHHHHHHHHHHhc
Q 010533 410 RFSDDAS-VLQEVMSIITVLSL 430 (508)
Q Consensus 410 ~~~~~~~-v~e~a~~aL~~La~ 430 (508)
.+..++. +...+.-.++.||.
T Consensus 423 ~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 423 MFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHhhhhHHHHhhhhHHHHHHHH
Confidence 7766654 44567777788874
No 115
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=7.3 Score=39.54 Aligned_cols=226 Identities=11% Similarity=0.098 Sum_probs=133.9
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhH----HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533 231 EDPEILNSGFAVVAASATGNEVVK----ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~e~nr----~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~ 306 (508)
++..|...+|+-++.+..+++.|- ..++.+|..+.++..+-..++++-.+|...|..++.-.+ -..
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa----------ale 163 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA----------ALE 163 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH----------HHH
Confidence 456677777777777666666442 234588999999999988777888888888988875432 122
Q ss_pred HHHhcCCHHHH--HHHHhcCCChhHHHHHHHHHHHh-hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHH
Q 010533 307 RFAKIGIARAL--VHSLHAGLSSPSLISASIALKAV-AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (508)
Q Consensus 307 ~i~~~g~i~~L--v~lL~~~~d~~~~~~a~~aL~~L-a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~ 383 (508)
.|.++..++++ .++.... +.-+...+...+-.+ +..++.....-.+|-+..|..=|... + +.-|...++....
T Consensus 164 aiFeSellDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-e--DtLVianciElvt 239 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-E--DTLVIANCIELVT 239 (524)
T ss_pred HhcccccCChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-c--ceeehhhHHHHHH
Confidence 34444444433 2222222 222334444444444 34666666666778777777767642 3 2367788999999
Q ss_pred HhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH----hcC--Chh-hHHHHHhcCcHHHHHHHHHcCC
Q 010533 384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL----SLR--SPE-NAARAMEAGSGDLAIQAMLKFP 456 (508)
Q Consensus 384 ~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L----a~~--~~~-~~~~i~~~G~i~~Lv~~L~~h~ 456 (508)
.|+...-.++-+.+.|.|+.|...+....++|--...++.....+ +.- .++ .+.++.- .++-..+.+. .
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiE--m 315 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIE--M 315 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhh--c
Confidence 999888888888888999999998875455554444333322222 111 111 1111110 1222223332 3
Q ss_pred CcHHHHHHHHHHHHHhhh
Q 010533 457 NAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 457 ~~~~vq~~A~~aL~nL~~ 474 (508)
+++..+..|.-++.-|.+
T Consensus 316 nDpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 316 NDPDAIEAAIDALGILGS 333 (524)
T ss_pred CCchHHHHHHHHHHhccC
Confidence 566777777777777654
No 116
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.11 E-value=11 Score=43.00 Aligned_cols=266 Identities=12% Similarity=0.132 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~ 268 (508)
..+++..-..+|+..+.-++....-.++...|.++.+...+++++.+...+-.++..++- .+.|-.. +..-.||.|+.
T Consensus 543 s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~~g~-m~e~~iPslis 620 (1005)
T KOG2274|consen 543 SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAANYGP-MQERLIPSLIS 620 (1005)
T ss_pred cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHhhcc-hHHHHHHHHHH
Confidence 457777778888888876644455566778899999888888999887777777666642 2222111 22347999999
Q ss_pred HHhcCCh----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-C
Q 010533 269 ILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-N 343 (508)
Q Consensus 269 lL~~~~~----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~ 343 (508)
+|..... ....-+...|..+.+...+.. ...+.. -+.|++.++.-...|.+.+.++..+|+.+-. .
T Consensus 621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL--------~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL--------PNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHcCcccccCchhhHHHHHHHHHHHhcCCCCc--------cHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 9987652 444446666665554432211 122322 3688998887544467788899899977654 3
Q ss_pred hhhHhHHhhcCCHH--HHHHHHhccCCCCcHHHHHHHHHHHHHhh-------C--CchhHHHHHhCCcHHHHHHHHhccC
Q 010533 344 DEICKSVAENGGID--ALLRCIDDSGLQGNKTVARICCSLLSKLA-------G--SDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 344 ~e~~~~i~e~Ggi~--~Lv~lL~~~~~~~~~~v~~~al~aL~~La-------~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
.+-...-...+|.. .++..+..--+ ++.-+.++...+.|. + -..|-+.| +..++.=|.. .
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLLd---p~~sds~a~~VG~lV~tLit~a~~el~~n~d~I-----L~Avisrmq~-a 762 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLLD---PETSDSAAAFVGPLVLTLITHASSELGPNLDQI-----LRAVISRLQQ-A 762 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHcC---CccchhHHHHHhHHHHHHHHHHHHHhchhHHHH-----HHHHHHHHHH-h
Confidence 33332233344444 44433332111 011122222333221 1 12222223 2233333332 3
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcH---------HHH-HHHHHHHHHhhh
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQ---------QLQ-RSSCFMIRNLVA 474 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~---------~vq-~~A~~aL~nL~~ 474 (508)
...++..+-..+++.|...+++..-.++-. +|-+.+--.|....++. +|+ +.-|-|+.++.+
T Consensus 763 e~lsviQsLi~VfahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~ 838 (1005)
T KOG2274|consen 763 ETLSVIQSLIMVFAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLIS 838 (1005)
T ss_pred hhHHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhc
Confidence 457888899999999998887765555543 56666655564433222 122 456888888875
No 117
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.07 E-value=1.3 Score=47.51 Aligned_cols=163 Identities=15% Similarity=0.197 Sum_probs=112.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHH
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS 393 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~ 393 (508)
...+++++.++.. ..+..+...|..|+.+..+...++...|+..|..++.+....-+.++...++.++..|-.+.-..=
T Consensus 85 a~~i~e~l~~~~~-~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNN-ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCc-HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3455667777643 333447778888999999999999999999999999986552245788888888877653221111
Q ss_pred HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533 394 AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 394 ~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
..+...+|.....+.+...-+..+...|++.|-++...++.....+.+.--+..|+..++. .+..++..|...|..|.
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~--~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV--SNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence 1112223334444443223456788899999999999888888888888888999998875 46778888666665565
Q ss_pred hcCccc
Q 010533 474 ARNPEN 479 (508)
Q Consensus 474 ~~~~e~ 479 (508)
.+-|+-
T Consensus 242 ~~a~~~ 247 (713)
T KOG2999|consen 242 RKAPDD 247 (713)
T ss_pred hhCChH
Confidence 554444
No 118
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.06 E-value=3.2 Score=45.14 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=129.3
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCH--HHHHHHHHHHHHhhcCC
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP--EILNSGFAVVAASATGN 250 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~--~v~~~a~~~L~~l~~~~ 250 (508)
+.+|.+-.+|.+.......++..+..+.-++.+ .+...|++.++.-+-..-.+. .....++..++.++...
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-------~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMR-------CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 456777777766533444554444444333321 122234433332211000011 22234455555443222
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHH
Q 010533 251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330 (508)
Q Consensus 251 e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~ 330 (508)
+.. -......++|.|.++|.....++++.+..+|..++.--++. .|- -.+|.|++.+..-. . -.
T Consensus 286 p~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-----------dI~--~~ip~Lld~l~dp~-~-~~ 349 (569)
T KOG1242|consen 286 PKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-----------DIQ--KIIPTLLDALADPS-C-YT 349 (569)
T ss_pred hHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-----------HHH--HHHHHHHHHhcCcc-c-ch
Confidence 222 22334578999999998877788888888888777433321 111 24678888776432 1 11
Q ss_pred HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhc
Q 010533 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR 410 (508)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~ 410 (508)
......|..=. +.. .++.-.+..++-+|.......+..+.+.++..+.|++.--+....+. -.+|.|+.-++.
T Consensus 350 ~e~~~~L~~tt----FV~-~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la--pfl~~Llp~lk~ 422 (569)
T KOG1242|consen 350 PECLDSLGATT----FVA-EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA--PFLPSLLPGLKE 422 (569)
T ss_pred HHHHHhhccee----eee-eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh--hhHHHHhhHHHH
Confidence 22222222111 111 12334556666666654444456888999999999985322222221 234444444432
Q ss_pred c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC
Q 010533 411 F--SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN 457 (508)
Q Consensus 411 ~--~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~ 457 (508)
- ...|.++.-+..+|..+-.|- .+.. ..+.+|.+.+.+..+..
T Consensus 423 ~~~d~~PEvR~vaarAL~~l~e~~-g~~~---f~d~~p~l~e~~~~~k~ 467 (569)
T KOG1242|consen 423 NLDDAVPEVRAVAARALGALLERL-GEVS---FDDLIPELSETLTSEKS 467 (569)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHH-Hhhc---ccccccHHHHhhccchh
Confidence 1 225899999999998776432 1111 14566777776655543
No 119
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=94.02 E-value=9.6 Score=41.45 Aligned_cols=273 Identities=11% Similarity=-0.027 Sum_probs=143.1
Q ss_pred HCCcHHHHHHHHhcccC----CCH---HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC--CCHHHHHHHHH
Q 010533 171 KNGGVELVCSICYKMRC----GSK---RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN--EDPEILNSGFA 241 (508)
Q Consensus 171 ~~Gavp~Lv~lL~~~~~----~~~---~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~--~~~~v~~~a~~ 241 (508)
-++++|.|++||.+.+. +|. .-...||+..+.++.+. .+.+++.+.+.+- ++-.-.+.+.-
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~----------i~~pVl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK----------IMRPVLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH----------hHHHHHHHHHHhccCchhhhHHHHHH
Confidence 45689999999976321 122 22445777667665542 3445666665432 22333455666
Q ss_pred HHHHhhcC-ChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHH
Q 010533 242 VVAASATG-NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVH 319 (508)
Q Consensus 242 ~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~ 319 (508)
+++.+..+ ++..+..++ ..++|.+...+....--+...++|.+..++. +.-.+. ..|-+++.+.
T Consensus 389 AfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad-------------~va~~i~p~~Hl~~~vs 454 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIAD-------------HVAMIISPCGHLVLEVS 454 (858)
T ss_pred HhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHH-------------HHHHhcCccccccHHHH
Confidence 66665332 233333444 2567777776653222566678899988862 222333 4466666555
Q ss_pred HHhcCC-C-hhHHHHHHHHHHHhhcC-h-------hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--
Q 010533 320 SLHAGL-S-SPSLISASIALKAVAVN-D-------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-- 387 (508)
Q Consensus 320 lL~~~~-d-~~~~~~a~~aL~~La~~-~-------e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-- 387 (508)
...-|- | +....+.||+.-+|... . .....+.. ..+..|+..-..... +......+..+|+.|..
T Consensus 455 a~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~-ai~~~Lv~~t~~~~N--e~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 455 ASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL-AILNALVKGTELALN--ESNLRVSLFSALGTLILIC 531 (858)
T ss_pred HHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH-HHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhhc
Confidence 544332 2 56678889998887632 1 11111111 012223322221111 12677788899988853
Q ss_pred CchhHHHHHhCCcHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc
Q 010533 388 SDSNKSAIIENGGMDKLIVVSAR-------------FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK 454 (508)
Q Consensus 388 ~~~~k~~Iv~~Ggl~~Lv~lL~~-------------~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~ 454 (508)
.|.....++ |.......-|.. -.....+|.+-|.+|..+..+.+.-...+- .-...+++++|++
T Consensus 532 ~d~V~~~~a--~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les 608 (858)
T COG5215 532 PDAVSDILA--GFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILES 608 (858)
T ss_pred chhHHHHHH--HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhc
Confidence 334444333 222222221110 011346788888898888755443222221 2246778888876
Q ss_pred CCCcHHHHHHHHHHHHHhhh
Q 010533 455 FPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 455 h~~~~~vq~~A~~aL~nL~~ 474 (508)
. +...+-...-.+|.+|..
T Consensus 609 ~-~~t~~~~dV~~aIsal~~ 627 (858)
T COG5215 609 T-KPTTAFGDVYTAISALST 627 (858)
T ss_pred c-CCchhhhHHHHHHHHHHH
Confidence 4 333445566667777764
No 120
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=2.1 Score=48.42 Aligned_cols=308 Identities=12% Similarity=0.102 Sum_probs=166.0
Q ss_pred hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc---hhHHHhcCChHHHHHHHhcCCC----CHHH
Q 010533 163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---TETFRTGGGPKLLVNILIDGNE----DPEI 235 (508)
Q Consensus 163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~---~~~i~~~ggi~~Lv~lL~~~~~----~~~v 235 (508)
..+...+++.|+|..|+.+=+-.. .--=+..||-.|.++-.-.+. -+.++-...+..-+++|..... +..+
T Consensus 384 ~kfa~~fv~~~gi~kll~vpr~s~--~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ 461 (1516)
T KOG1832|consen 384 RKFAAMFVERRGILKLLAVPRVSE--TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSAL 461 (1516)
T ss_pred hHHHHHHHHhhhhHHHhcCCCchh--hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHH
Confidence 445567888888888776532210 000123456666554221110 0233344456666667764311 1122
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC-------Ch------------HHHHHHHHHHHHhc-CCCcch
Q 010533 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-------RN------------DSIQSLYDAIRVLL-TPDDDQ 295 (508)
Q Consensus 236 ~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~-------~~------------~~~~~A~~aL~~L~-~~dd~r 295 (508)
--.++...+.+ -+.|-..+++..|+.+|+.- .+ ..-+..|.+|+.-- ..=-++
T Consensus 462 ff~~~f~frai-------l~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ik 534 (1516)
T KOG1832|consen 462 FFAAAFVFRAI-------LDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIK 534 (1516)
T ss_pred HHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 22222222211 12233345666666666431 11 12234577776421 100011
Q ss_pred hhhhhcchHHHHHHhcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhc-Ch-------hhHhHHhhcCCHHHHHHH
Q 010533 296 VVASQVYGYARRFAKIGIARALVHSLHAGLS-----SPSLISASIALKAVAV-ND-------EICKSVAENGGIDALLRC 362 (508)
Q Consensus 296 ~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d-----~~~~~~a~~aL~~La~-~~-------e~~~~i~e~Ggi~~Lv~l 362 (508)
...+.+.-...|+.+..+.-+..... ....+.+||-+-.+-. -+ +-...+...||+..++.+
T Consensus 535 -----ve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l 609 (1516)
T KOG1832|consen 535 -----VESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLEL 609 (1516)
T ss_pred -----HHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHH
Confidence 11223333355666666654444321 2345666665533321 11 224456778999999988
Q ss_pred HhccCCCC----cHHHHHHHHHHHHHhhCCchhHHHHHhC--------CcHHHHHHHHh-ccCC-CHHHHHHHHHHHHHH
Q 010533 363 IDDSGLQG----NKTVARICCSLLSKLAGSDSNKSAIIEN--------GGMDKLIVVSA-RFSD-DASVLQEVMSIITVL 428 (508)
Q Consensus 363 L~~~~~~~----~~~v~~~al~aL~~La~~~~~k~~Iv~~--------Ggl~~Lv~lL~-~~~~-~~~v~e~a~~aL~~L 428 (508)
....++-. -.+++..|+.+|.-+..-|+.+.+++.+ .|+..|++.-. ++.- +|+++..|+.+|-|+
T Consensus 610 ~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIinc 689 (1516)
T KOG1832|consen 610 CQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINC 689 (1516)
T ss_pred HhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhhee
Confidence 76543211 1378888899888887778887777643 26666666433 3333 799999999999998
Q ss_pred hcCChhhHH-----------------------------------HHHhcCcHHHHHHHHHc--CCCcH-HHHHHHHHHHH
Q 010533 429 SLRSPENAA-----------------------------------RAMEAGSGDLAIQAMLK--FPNAQ-QLQRSSCFMIR 470 (508)
Q Consensus 429 a~~~~~~~~-----------------------------------~i~~~G~i~~Lv~~L~~--h~~~~-~vq~~A~~aL~ 470 (508)
...-|+++. ++....||..|+.+|+. -+..+ .+++-||.+|.
T Consensus 690 Vc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~ 769 (1516)
T KOG1832|consen 690 VCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLL 769 (1516)
T ss_pred ecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHh
Confidence 754433322 22345788899998853 22333 36677999998
Q ss_pred HhhhcCccchHHHHh
Q 010533 471 NLVARNPENSFCSVM 485 (508)
Q Consensus 471 nL~~~~~e~~~~~~~ 485 (508)
-|+ |+++.|+.+-.
T Consensus 770 GLa-R~~tVrQIltK 783 (1516)
T KOG1832|consen 770 GLA-RDDTVRQILTK 783 (1516)
T ss_pred ccc-cCcHHHHHHHh
Confidence 885 78888877654
No 121
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.41 E-value=3.6 Score=44.31 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=102.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHh
Q 010533 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAV 340 (508)
Q Consensus 264 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~L 340 (508)
..+.+++.++++..+..+...|..|+.+ +..++.++...++..|..++.++.. .+++.....+++.|
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d----------~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~el 155 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLD----------PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSEL 155 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc----------HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHH
Confidence 4566778887776666677777777754 2456788888999999999998764 34444444444443
Q ss_pred hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHH
Q 010533 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (508)
Q Consensus 341 a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e 419 (508)
...--.....+...+|..+..+.... ..+..+...|+..|.++..+ +.-.+.|.+.--++.|+..++ .++..++.
T Consensus 156 mehgvvsW~~~~~~fV~~~a~~V~~~--~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq--~~n~~i~~ 231 (713)
T KOG2999|consen 156 MEHGVVSWESVSNDFVVSMASYVNAK--REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ--VSNQRIQT 231 (713)
T ss_pred HhhceeeeeecccHHHHHHHHHHhhh--hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH--hcchHHHH
Confidence 22111111222222333334444321 11346888999999999754 456666767677999999998 77889999
Q ss_pred HHHHHHHHHhcCChh
Q 010533 420 EVMSIITVLSLRSPE 434 (508)
Q Consensus 420 ~a~~aL~~La~~~~~ 434 (508)
+|.+.|-.|-.+-|+
T Consensus 232 ~aial~nal~~~a~~ 246 (713)
T KOG2999|consen 232 CAIALLNALFRKAPD 246 (713)
T ss_pred HHHHHHHHHHhhCCh
Confidence 999888888765543
No 122
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.41 E-value=0.39 Score=41.54 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=70.9
Q ss_pred HHHHHHHHHH-HHhhcCCChhHHH----HHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCCh
Q 010533 66 QEAFDEVVKE-NMEDLGMEPTEAL----QDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSD 140 (508)
Q Consensus 66 Qetfd~~v~e-ni~~~~m~p~eal----~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~ 140 (508)
.-|||+.+.| +-..++-+|-+-- ++=+..|+.+++ ..++.|...+..+
T Consensus 3 ltsfdeY~~El~sg~L~WSP~H~se~FW~ENa~kf~~~~~---------------------~llk~L~~lL~~s------ 55 (119)
T PF11698_consen 3 LTSFDEYLSELESGHLEWSPVHKSEKFWRENADKFEENNF---------------------ELLKKLIKLLDKS------ 55 (119)
T ss_dssp --HHHHHHHHHHHT-----GGGG-HHHHHHHSGGGSSGGG---------------------HHHHHHHHHH-SH------
T ss_pred CCcHHHHHHHHhcCCccccCCCCCccHHHHHHHHHHHccc---------------------HHHHHHHHHHccC------
Confidence 4589888888 3445555564432 222223333333 2467777777432
Q ss_pred hhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhh
Q 010533 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV 204 (508)
Q Consensus 141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~ 204 (508)
.|...+.-|+..|..+++. .|.-|..+.+.|+=..+..|+.+ +|+++...||.++..++
T Consensus 56 ~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 56 DDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNH---EDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS----SSHHHHHHHHHHHHHHH
T ss_pred CCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 2777788899999999987 88889999999999999999998 58999999999987654
No 123
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.34 E-value=7.7 Score=43.16 Aligned_cols=215 Identities=11% Similarity=0.107 Sum_probs=136.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhh
Q 010533 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (508)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~ 299 (508)
+.++.+|. +.-+-+...|+.++..++.+.++. +. .++|.|++-|..+++.++.+|..+++-|++-+ ++
T Consensus 147 ~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKn-Pk---- 214 (877)
T KOG1059|consen 147 DDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKN-PQ---- 214 (877)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-Cc----
Confidence 44666775 345778888888888877665543 11 35788999999888899999999999998643 11
Q ss_pred hcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHH
Q 010533 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (508)
Q Consensus 300 ~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~a 378 (508)
+.- -.-|.+..+|.+.++.=++..+....++|+-- +...+. -+++|.++|.+... ..++=+|
T Consensus 215 ----nyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~A---mSLlYEC 277 (877)
T KOG1059|consen 215 ----NYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVA---MSLLYEC 277 (877)
T ss_pred ----ccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHH---HHHHHHH
Confidence 111 23488888888766554666666666667653 333232 35788888875321 2455555
Q ss_pred HHHHHH--h-hCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533 379 CSLLSK--L-AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455 (508)
Q Consensus 379 l~aL~~--L-a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h 455 (508)
..++-. + +|.+++-..|- =++..|-.++. .+++.++--+|-++.-+...+|...++- -+.++++|..
T Consensus 278 vNTVVa~s~s~g~~d~~asiq--LCvqKLr~fie--dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~D- 347 (877)
T KOG1059|consen 278 VNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIE--DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDD- 347 (877)
T ss_pred HHHheeehhccCCCCcHHHHH--HHHHHHhhhhh--cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhcc-
Confidence 544422 2 23334433332 24566666666 5678888888888888887777654442 3567777754
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 010533 456 PNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 456 ~~~~~vq~~A~~aL~nL~~ 474 (508)
.++.++-.|.-.|.-|++
T Consensus 348 -kD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 348 -KDESIRLRALDLLYGMVS 365 (877)
T ss_pred -CCchhHHHHHHHHHHHhh
Confidence 456677777777777764
No 124
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.33 E-value=4.3 Score=46.88 Aligned_cols=179 Identities=16% Similarity=0.059 Sum_probs=118.4
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHH-HHHHHHHHHhhcCCcchhHHHhcCChHHHHHHH
Q 010533 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVL-DSCLKTMALLVHDVQSTETFRTGGGPKLLVNIL 226 (508)
Q Consensus 148 ~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~-~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL 226 (508)
.||.-|.+...- ++=....+..-|..|..++||++....=..++ .=-.+.|+ -|..-+.++++.+|-..++..|
T Consensus 489 RAL~LL~RFLDl--GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA---vD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 489 RALVLLARFLDL--GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA---VDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHhcc--chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh---cCchhHHHHHhccCceeEEEEe
Confidence 344444444433 44444566778999999999998632111111 11112222 2322247899999999999998
Q ss_pred hcC-CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchH
Q 010533 227 IDG-NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGY 304 (508)
Q Consensus 227 ~~~-~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~ 304 (508)
... .-+++-..-++-+|+.++....-..+...+.+.+..-++.|+.+.. -..+-.|-.|..|=.|- +.
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~----------~~ 633 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY----------DE 633 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc----------ch
Confidence 762 2244666777888888888777777888888999999999988533 34444666676664332 23
Q ss_pred HHHHH-hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 010533 305 ARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (508)
Q Consensus 305 ~~~i~-~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~ 342 (508)
+|-.. +.++.+.|+.+|.+. -+++...+..||+.+..
T Consensus 634 Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 634 ARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhc
Confidence 44444 668899999999863 47888999999988766
No 125
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.30 E-value=0.95 Score=50.47 Aligned_cols=213 Identities=12% Similarity=0.082 Sum_probs=136.9
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHH
Q 010533 251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330 (508)
Q Consensus 251 e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~ 330 (508)
..-|...++-|+...|+.+.....+.....+.-+|.. .++|.+ .+ ....++++.+++..-...--.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~-------~i~f~~----~~---~~~v~~~~~s~~~~d~~~~en 559 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAG-------KIDFPG----ER---SYEVVKPLDSALHNDEKGLEN 559 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhh-------hcCCCC----Cc---hhhhhhhhcchhhhhHHHHHH
Confidence 3345566788999999988876655555555555541 111211 00 013567777766542211223
Q ss_pred HHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-hhHHHHHh-CCcHHHHHHH
Q 010533 331 ISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD-SNKSAIIE-NGGMDKLIVV 407 (508)
Q Consensus 331 ~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~-~~k~~Iv~-~Ggl~~Lv~l 407 (508)
.+...++.||+. ++..+++|...-+++.+-+++.+ + ++.+++.++..+-||..++ -....|++ ..+++.....
T Consensus 560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e--e--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~ 635 (748)
T KOG4151|consen 560 FEALEALTNLASISESDRQKILKEKALGKIEELMTE--E--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLN 635 (748)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc--c--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHH
Confidence 567788999998 44556778877666666666554 2 3489999999999998665 45666777 5578877777
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCChhhHH-HHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 408 SARFSDDASVLQEVMSIITVLSLRSPENAA-RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 408 L~~~~~~~~v~e~a~~aL~~La~~~~~~~~-~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
+. .........+++++..|+.-...++. ..-...+.+.++.++.. .+..+|.-+...+.|+.....+....+..
T Consensus 636 ~e--~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~--~~~~~qhrgl~~~ln~~~~~~ei~~~~~~ 710 (748)
T KOG4151|consen 636 LE--VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD--EDDEIQHRGLVIILNLFEALFEIAEKIFE 710 (748)
T ss_pred HH--hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC--chhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 76 45566777888888877765555555 33334567777777743 45788988888888876555555555543
No 126
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.27 E-value=9.6 Score=43.47 Aligned_cols=236 Identities=14% Similarity=0.065 Sum_probs=140.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHH
Q 010533 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (508)
Q Consensus 230 ~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i 308 (508)
+..+.+.-.+++++...+.....+.+.+-. .+...+..+.-+.. .+.-.|++++...+... .+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~--------------vl 524 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVK--------------VL 524 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCce--------------ec
Confidence 455666667777777654332333332211 22333444443322 34445666666655211 11
Q ss_pred H--hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 309 A--KIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 309 ~--~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
. .-+.++.|+++...+ ..+++.-+..+|+..+. +++.. .-.++-..|.++.++....+.+ .|...+-.++..|
T Consensus 525 ~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el 600 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDP--QVASLAQDLFEEL 600 (1005)
T ss_pred cccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHH
Confidence 1 236788888887765 35677777888877776 44433 3334456788888877665544 7777777778777
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHhccCC--CHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533 386 AGSDSNKSAIIENGGMDKLIVVSARFSD--DASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462 (508)
Q Consensus 386 a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~--~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq 462 (508)
....++...+.+ -.+|.|++.|..... .+..+.-+.-.|..+..+.| ..-+.++. -..|++.++. -|+++..+-
T Consensus 601 ~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~t-lHsdD~~tl 677 (1005)
T KOG2274|consen 601 LQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKIT-LHSDDHETL 677 (1005)
T ss_pred HHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhhe-eecCChHHH
Confidence 654444333322 468999999983221 14555666666665553332 23333332 3578888887 588887777
Q ss_pred HHHHHHHHHhhhcCccchHHHHhccc
Q 010533 463 RSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 463 ~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
..|-.+||-+.+.++++....-.+++
T Consensus 678 Q~~~EcLra~Is~~~eq~~t~~~e~g 703 (1005)
T KOG2274|consen 678 QNATECLRALISVTLEQLLTWHDEPG 703 (1005)
T ss_pred HhHHHHHHHHHhcCHHHHHhhccCCC
Confidence 78888999998877777666655544
No 127
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.24 E-value=1.2 Score=41.98 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhcChhhHhHHhhcC----------------CHHHHHHHHhccCC--CCcHHHHHHHHHHHHHhhCCchhH
Q 010533 331 ISASIALKAVAVNDEICKSVAENG----------------GIDALLRCIDDSGL--QGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~e~G----------------gi~~Lv~lL~~~~~--~~~~~v~~~al~aL~~La~~~~~k 392 (508)
.-+|-.|+||+..++.|..+.+.+ .+..|++++..+.+ ....+-......+|.|++..+++|
T Consensus 13 dl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR 92 (192)
T PF04063_consen 13 DLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGR 92 (192)
T ss_pred HHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHH
Confidence 446667788888877777555332 35667777765111 001256678899999999999999
Q ss_pred HHHHhCC--c--HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc---CcHHHHHHHH
Q 010533 393 SAIIENG--G--MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA---GSGDLAIQAM 452 (508)
Q Consensus 393 ~~Iv~~G--g--l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~---G~i~~Lv~~L 452 (508)
..+.+.. . +..|+..+. |. +..=++.++++|.|+|...+.+ ..++.. +.++.|+--+
T Consensus 93 ~~~l~~~~~~~~l~kLl~ft~-~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 93 QFFLDPQRYDGPLQKLLPFTE-HK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHhCchhhhhHHHHHHHHhc-cC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 9998654 2 455555554 33 6666788999999999855544 444442 4455555444
No 128
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.78 E-value=18 Score=41.06 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=99.7
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCH--HHHHHHHhccCCCCcHHHHHHHH
Q 010533 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi--~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
+++++.+.+.||+..+...++.+...+....+.+.+.+++...++.......--+ ..+-.++.... ..+..-.++
T Consensus 503 ~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~---~~ersY~~~ 579 (699)
T KOG3665|consen 503 PETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWD---SIERSYNAA 579 (699)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---hhhHHHHHH
Confidence 5688999999999999999999866778889999999998755432211100001 12222333321 125556777
Q ss_pred HHHHHhhCCch------hH----HHHHh--------------CCcHHH-HHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 380 SLLSKLAGSDS------NK----SAIIE--------------NGGMDK-LIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 380 ~aL~~La~~~~------~k----~~Iv~--------------~Ggl~~-Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
+.|+.+..+.+ .+ +.+++ ..-..+ +..++. .+..+..+-.|.+++.+++..+++
T Consensus 580 siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~-~s~~~g~~lWal~ti~~~~~~~~~ 658 (699)
T KOG3665|consen 580 SILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR-LSKSDGSQLWALWTIKNVLEQNKE 658 (699)
T ss_pred HHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc-ccCCCchHHHHHHHHHHHHHcChh
Confidence 77777653211 11 11111 111223 444443 244567789999999999999999
Q ss_pred hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHH
Q 010533 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC 466 (508)
Q Consensus 435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~ 466 (508)
+++.+.+.|+++.+.+... ++....++..+-
T Consensus 659 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 659 YCKLVRESNGFELIENIRV-LSEVVDVKEEAV 689 (699)
T ss_pred hhhhhHhccchhhhhhcch-hHHHHHHHHHHH
Confidence 9999999999999887654 222344444443
No 129
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.49 E-value=1.7 Score=45.89 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=95.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC---C--hhHHHHHHH-HHHH
Q 010533 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL---S--SPSLISASI-ALKA 339 (508)
Q Consensus 266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~---d--~~~~~~a~~-aL~~ 339 (508)
+..+++..+++-+-+|.-....++.+||+-. .+.|.+.++=|.+-+-.+|++.+ | +.+...+.. .|..
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a------~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac 89 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVA------LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC 89 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhh------hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 4445554454444555555556778887632 34566678888888889998754 2 245444443 3566
Q ss_pred hhcChhhH--hHHhhcCCHHHHHHHHhccCCCC---cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 340 VAVNDEIC--KSVAENGGIDALLRCIDDSGLQG---NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 340 La~~~e~~--~~i~e~Ggi~~Lv~lL~~~~~~~---~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
.+..+|.. ..+++ .||.|+..|....+.. +-.+++.+-.+|..+|+.+.+...++..||++.+-++-.-|+
T Consensus 90 FC~~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 90 FCRVPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred HhCChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 67777653 35554 5899999998654331 234889999999999999999999999999999987665443
No 130
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.39 E-value=0.25 Score=42.72 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=60.7
Q ss_pred hhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533 345 EICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421 (508)
Q Consensus 345 e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a 421 (508)
||..++.+.. .++.|+++|..+. ++.++.-||.=|+.++. .|..+..+-+.|+=+.++++|. .+++.|+.+|
T Consensus 32 ENa~kf~~~~~~llk~L~~lL~~s~---d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eA 106 (119)
T PF11698_consen 32 ENADKFEENNFELLKKLIKLLDKSD---DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEA 106 (119)
T ss_dssp HHSGGGSSGGGHHHHHHHHHH-SHH---HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHccCC---CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHH
Confidence 4444554433 3678899996542 45788889999999875 6888888878888899999998 5799999999
Q ss_pred HHHHHHHhc
Q 010533 422 MSIITVLSL 430 (508)
Q Consensus 422 ~~aL~~La~ 430 (508)
+-++--|..
T Consensus 107 L~avQklm~ 115 (119)
T PF11698_consen 107 LLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 131
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=16 Score=40.81 Aligned_cols=93 Identities=10% Similarity=0.047 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~ 268 (508)
++-..+-||+.++++-. .++.++ --+.+-++|.+.++..-+...++-++..+-.++++ .+-..+.+..++.
T Consensus 124 n~~fv~LAL~~I~niG~-----re~~ea-~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~ 194 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIGS-----REMAEA-FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVH 194 (938)
T ss_pred CcHHHHHHHHHHHhhcc-----HhHHHH-hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHH
Confidence 45556667777766432 111111 11223366766666666777777676666555443 2223456777777
Q ss_pred HHhcCChHHHHHHHHHHHHhcC
Q 010533 269 ILSRQRNDSIQSLYDAIRVLLT 290 (508)
Q Consensus 269 lL~~~~~~~~~~A~~aL~~L~~ 290 (508)
+|...+..+..++...+-.|+.
T Consensus 195 LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 195 LLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred HhCccccceeeehHHHHHHHHH
Confidence 7765444455555555555553
No 132
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.32 E-value=5.2 Score=44.05 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=97.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533 304 YARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (508)
Q Consensus 304 ~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL 382 (508)
....|..+|+.-++|.-|.+. =-++..++...+..|+. ++.+... +++.|++++.+. ..+|...|..+|
T Consensus 365 ~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE----~~~VRL~ai~aL 434 (823)
T KOG2259|consen 365 EEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDE----IEVVRLKAIFAL 434 (823)
T ss_pred cccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccH----HHHHHHHHHHHH
Confidence 344567889989998877642 14688888888999998 4444332 467888888763 238889999999
Q ss_pred HHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533 383 SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462 (508)
Q Consensus 383 ~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq 462 (508)
..++.+- .++..-++.++..|. ..++.++++.--.|.+.-..+-+.... .+..++..|.++|.+..
T Consensus 435 ~~Is~~l-----~i~eeql~~il~~L~--D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~kyPqDrd-- 500 (823)
T KOG2259|consen 435 TMISVHL-----AIREEQLRQILESLE--DRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGKYPQDRD-- 500 (823)
T ss_pred HHHHHHh-----eecHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhhCCCCcH--
Confidence 9988652 234456788899998 456888877666666554433332222 23455666777776643
Q ss_pred HHHHHHHHHhhhcCcc
Q 010533 463 RSSCFMIRNLVARNPE 478 (508)
Q Consensus 463 ~~A~~aL~nL~~~~~e 478 (508)
..-.+++.+...++-
T Consensus 501 -~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 501 -EILRCMGRIGQNHRR 515 (823)
T ss_pred -HHHHHHHHHhccChh
Confidence 233345555554443
No 133
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.25 E-value=2.5 Score=39.10 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhccc------CCCHHHHHHHHHHHHHhhcCCcchhHHHh-cCChH
Q 010533 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR------CGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPK 220 (508)
Q Consensus 148 ~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~------~~~~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~ 220 (508)
+.+..|+...+. ....+...+.+.||+..|+.+|.... ..+.+.+..|+..+-++++.......++. .+++.
T Consensus 83 ~~L~~L~v~Lrt-~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRT-NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHH-S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhcc-CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHH
Confidence 556666665554 24556677778999999999986432 13446778888888888886655666666 57899
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASA 247 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~ 247 (508)
.++..|. +.+..+...++..|..+|
T Consensus 162 ~i~~~L~--s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLD--SPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT----TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHHH
Confidence 9999886 467889999999888876
No 134
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=24 Score=39.42 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=90.1
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (508)
++..|-+.|.+. ..++..-+...+..|+........+-.. .+.++..|+...| ..+++.++.+|..++. .+|.
T Consensus 330 ~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterD---vSirrravDLLY~mcD-~~Na 402 (938)
T KOG1077|consen 330 AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERD---VSIRRRAVDLLYAMCD-VSNA 402 (938)
T ss_pred HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccc---hHHHHHHHHHHHHHhc-hhhH
Confidence 455555555542 3334333444444455543222333222 6778888885433 4899999999988874 3455
Q ss_pred HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-h------hHHHHH-------hcCcHHHHHHHHHcCCCc
Q 010533 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-E------NAARAM-------EAGSGDLAIQAMLKFPNA 458 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~------~~~~i~-------~~G~i~~Lv~~L~~h~~~ 458 (508)
..||+ -+++.|. ..+..++|.-..=++.|+..-- + ..-.++ +.++--.++++ -.++
T Consensus 403 k~IV~-----elLqYL~--tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQi---VvNn 472 (938)
T KOG1077|consen 403 KQIVA-----ELLQYLE--TADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQI---VVNN 472 (938)
T ss_pred HHHHH-----HHHHHHh--hcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhhee---Eecc
Confidence 55543 5677776 4678899988887777774211 1 111111 11112222222 2467
Q ss_pred HHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533 459 QQLQRSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 459 ~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
+++|..||.-+..... .|.....++..|+
T Consensus 473 edlq~yaak~~fe~Lq-~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 473 EDLQGYAAKRLFEYLQ-KPACHENMVKVGG 501 (938)
T ss_pred hhhhHHHHHHHHHHHh-hhHHHHHHHHhhh
Confidence 8888888887766543 4666677777764
No 135
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=91.47 E-value=11 Score=39.29 Aligned_cols=251 Identities=18% Similarity=0.184 Sum_probs=128.5
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhh
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
+..+++=|.. .....+++.++--|..-|. ++.-|..+...|.+..+++.+....+ ....-+..++..+...|..-.
T Consensus 23 v~ylld~l~~-~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~- 99 (361)
T PF07814_consen 23 VEYLLDGLES-SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM- 99 (361)
T ss_pred HHHHHhhccc-CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch-
Confidence 3444444542 3345666666666666554 56778899999999999999965433 344444444444443332111
Q ss_pred hhhcchHHHHHHhcCCHHHHHHHHh--cCCC--hhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcH
Q 010533 298 ASQVYGYARRFAKIGIARALVHSLH--AGLS--SPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNK 372 (508)
Q Consensus 298 ~~~a~~~~~~i~~~g~i~~Lv~lL~--~~~d--~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~ 372 (508)
..+-..+.+..++.++. ...+ ......-..-+..... .-..|..+...+-...- ..+.+.
T Consensus 100 --------~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~----~~~~~l--- 164 (361)
T PF07814_consen 100 --------HLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKS----PKPPEL--- 164 (361)
T ss_pred --------hhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccc----cCCccc---
Confidence 11223455666677777 1101 0000000010111000 00111111111100000 001111
Q ss_pred HHHHHHHHHHHHhh---------------CCchhHHHHHhCCcHHHHHHHHhc----cC-----C-----CHHHHHHHHH
Q 010533 373 TVARICCSLLSKLA---------------GSDSNKSAIIENGGMDKLIVVSAR----FS-----D-----DASVLQEVMS 423 (508)
Q Consensus 373 ~v~~~al~aL~~La---------------~~~~~k~~Iv~~Ggl~~Lv~lL~~----~~-----~-----~~~v~e~a~~ 423 (508)
.-+.-++.+|..++ ..+.-|+.+.+.||+..|++.+.. +. + +-...+.+..
T Consensus 165 sp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ 244 (361)
T PF07814_consen 165 SPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLS 244 (361)
T ss_pred ccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHH
Confidence 22233344444331 123457888899999999999862 11 1 1125566888
Q ss_pred HHHHHhcCChhhHHHHHhcCc--HH-HHHHHHHcC-CCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 424 IITVLSLRSPENAARAMEAGS--GD-LAIQAMLKF-PNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 424 aL~~La~~~~~~~~~i~~~G~--i~-~Lv~~L~~h-~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
+|=+-+..+++|...++.... .+ .+..++... ......+..+...|-|++.+||+.+..|...+
T Consensus 245 ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 245 ILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 888888888888888776532 22 222233221 11123345688899999999999988877653
No 136
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=29 Score=39.05 Aligned_cols=250 Identities=15% Similarity=0.112 Sum_probs=130.7
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
++.-|.+...+ ...-+...+.--++-+++.|.. .|+-+. -.|..+..+|.+. +..+...|..+|..
T Consensus 204 Al~Yl~~~idq----i~~~~~~LqlViVE~Irkv~~~--~p~~~~-----~~i~~i~~lL~st---ssaV~fEaa~tlv~ 269 (948)
T KOG1058|consen 204 ALNYLLSNIDQ----IPSFNDSLQLVIVELIRKVCLA--NPAEKA-----RYIRCIYNLLSST---SSAVIFEAAGTLVT 269 (948)
T ss_pred HHHHHHhhHhh----ccCccHHHHHHHHHHHHHHHhc--CHHHhh-----HHHHHHHHHHhcC---CchhhhhhcceEEE
Confidence 45555444333 2222445556667778888876 555433 3467788889884 66788888777777
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHH-HHHH
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS-IQSL 281 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~-~~~A 281 (508)
+.++. .....|+.++..+..+-.+|...++- +..|.. |+..+..+ +.-+
T Consensus 270 lS~~p--------------------------~alk~Aa~~~i~l~~kesdnnvklIv---ldrl~~-l~~~~~~il~~l~ 319 (948)
T KOG1058|consen 270 LSNDP--------------------------TALKAAASTYIDLLVKESDNNVKLIV---LDRLSE-LKALHEKILQGLI 319 (948)
T ss_pred ccCCH--------------------------HHHHHHHHHHHHHHHhccCcchhhhh---HHHHHH-HhhhhHHHHHHHH
Confidence 66543 22223333322222222222222211 112222 22212222 2234
Q ss_pred HHHHHHhcCCCc-chhhhhhcchHHHHHHhcCCHHHHHHHHhc-----CC---Ch--hHHHHHHHHHHHhhcC-hhhHhH
Q 010533 282 YDAIRVLLTPDD-DQVVASQVYGYARRFAKIGIARALVHSLHA-----GL---SS--PSLISASIALKAVAVN-DEICKS 349 (508)
Q Consensus 282 ~~aL~~L~~~dd-~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~-----~~---d~--~~~~~a~~aL~~La~~-~e~~~~ 349 (508)
...|+.|+..|- .| +++.+.+-.++.+.-+.-+++.|+. +. +. .-..-...++...|.+ ++...
T Consensus 320 mDvLrvLss~dldvr---~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aa- 395 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVR---SKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAA- 395 (948)
T ss_pred HHHHHHcCcccccHH---HHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHH-
Confidence 555555554431 11 1223333344444445555555542 21 11 1234455667666663 44433
Q ss_pred HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (508)
Q Consensus 350 i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L 428 (508)
..|+.|++.+.+.++ ......+..++..- ..|..|..|+ ..|++.+.. -.+..+.+.++|.+..-
T Consensus 396 ----tvV~~ll~fisD~N~----~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~-irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 396 ----TVVSLLLDFISDSNE----AAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQ-IRSSKICRGALWILGEY 461 (948)
T ss_pred ----HHHHHHHHHhccCCH----HHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhh-hcccccchhHHHHHHHH
Confidence 346889999987532 44445555555544 3566666664 456666643 23567889999999998
Q ss_pred hcCChh
Q 010533 429 SLRSPE 434 (508)
Q Consensus 429 a~~~~~ 434 (508)
|....+
T Consensus 462 ce~~~~ 467 (948)
T KOG1058|consen 462 CEGLSE 467 (948)
T ss_pred HhhhHH
Confidence 876654
No 137
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.31 E-value=6.6 Score=38.68 Aligned_cols=177 Identities=13% Similarity=0.183 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHH
Q 010533 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (508)
Q Consensus 235 v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~ 309 (508)
-.+.++..+..+|+ |++.|..|+++...-.|...|+..+. +.++ ...+++..|...||.. ....+.
T Consensus 66 RVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~e--------vi~fLl 136 (262)
T PF04078_consen 66 RVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPE--------VISFLL 136 (262)
T ss_dssp HHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HH--------HHHHHH
T ss_pred HHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHH--------HHHHHH
Confidence 34566666666665 78899999999988888888876543 4443 4678888898877643 334555
Q ss_pred hcCCHHHHHHHHhcCCChhHHHHHHHHHHHh----------hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533 310 KIGIARALVHSLHAGLSSPSLISASIALKAV----------AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 310 ~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L----------a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
+...+|..+..|+.|++- .+.-+...+..+ +...|--..+.. .+..++.-|.. .+++.+.+..+
T Consensus 137 ~tEiiplcLr~me~Gsel-SKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~---~pS~RLLKhII 210 (262)
T PF04078_consen 137 QTEIIPLCLRIMEFGSEL-SKTVATFILQKILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVK---QPSPRLLKHII 210 (262)
T ss_dssp CTTHHHHHHHHHHHS-HH-HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHH---S--HHHHHHHH
T ss_pred hhchHHHHHHHHHhccHH-HHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHcc---CCChhHHHHHH
Confidence 788999999999987521 122222333333 333332222221 34444444443 23569999999
Q ss_pred HHHHHhhCCchhHHHHHhCCcHHHHHH--HHhc-cCCCHHHHHHHHHHHHHH
Q 010533 380 SLLSKLAGSDSNKSAIIENGGMDKLIV--VSAR-FSDDASVLQEVMSIITVL 428 (508)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~Ggl~~Lv~--lL~~-~~~~~~v~e~a~~aL~~L 428 (508)
++--.|+.++..+.++.+ .+|..+. .+.. ..+|+.+++.--..+.|+
T Consensus 211 rCYlRLsdnprar~aL~~--~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 211 RCYLRLSDNPRAREALRQ--CLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHTTSTTHHHHHHH--HS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHHH--hCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999998874 4443221 0000 023566666555554444
No 138
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.08 E-value=1.8 Score=47.17 Aligned_cols=171 Identities=13% Similarity=0.209 Sum_probs=108.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHh---HHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICK---SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS 390 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~---~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~ 390 (508)
+..++.+|++. .+.+...++.+.+.|+.-=.+|. .+...|. .|.+-|.. ..++++-..+.++..+.+.-.
T Consensus 606 vStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge----~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 606 VSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGE----DYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCc----ccHHHHHHHHHHHHHHhhhhc
Confidence 45566677754 45666666666666654333332 2333332 23333432 345888888888877753221
Q ss_pred h---HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533 391 N---KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 391 ~---k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~--~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A 465 (508)
. +--| .|.+|.|.-.|+ +.+..|+.+....+..+|.+.|+.. ++... .---|++.|+.| +..++++|
T Consensus 679 ~~~mqpPi--~~ilP~ltPILr--nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR--IcfeLvd~Lks~--nKeiRR~A 750 (975)
T COG5181 679 FRSMQPPI--SGILPSLTPILR--NKHQKVVANTIALVGTICMNSPEYIGVREWMR--ICFELVDSLKSW--NKEIRRNA 750 (975)
T ss_pred ccccCCch--hhccccccHhhh--hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHh--hHHHHHhh
Confidence 1 1112 377899999998 7788999999999999999888742 22221 223567788776 56888888
Q ss_pred HHHHHHhhh-cCccchHHHHhccccccHHHHhhhh
Q 010533 466 CFMIRNLVA-RNPENSFCSVMVSRNLSDRQRRTTK 499 (508)
Q Consensus 466 ~~aL~nL~~-~~~e~~~~~~~~g~~~~~~~~~~~~ 499 (508)
...+..++. -.|.-.-.++-.|-.+..||.|+-.
T Consensus 751 ~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~Rvct 785 (975)
T COG5181 751 TETFGCISRAIGPQDVLDILLNNLKVQERQQRVCT 785 (975)
T ss_pred hhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhh
Confidence 877766653 2354445555558888899988754
No 139
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.31 E-value=23 Score=36.06 Aligned_cols=183 Identities=13% Similarity=0.158 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHH---cCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHH
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYME---LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~---~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i 308 (508)
..+.++.++..+..+...+.. ..++. .-.+..+.+.++.+..+-+..|+.++.-|+..= | ..+....+
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl------g-~g~~~~ei 126 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL------G-AGEDSEEI 126 (309)
T ss_pred CHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc------C-CCccHHHH
Confidence 356666777666666543321 12221 124667777777765544444555555444320 0 00112234
Q ss_pred HhcCCHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc---Ch-hhHhHHhhcCCHHHHHH--HHhccCC------CCcHHHH
Q 010533 309 AKIGIARALVHSLHAGLS-SPSLISASIALKAVAV---ND-EICKSVAENGGIDALLR--CIDDSGL------QGNKTVA 375 (508)
Q Consensus 309 ~~~g~i~~Lv~lL~~~~d-~~~~~~a~~aL~~La~---~~-e~~~~i~e~Ggi~~Lv~--lL~~~~~------~~~~~v~ 375 (508)
.+ ...|+|..++..++. ..+...++.+|+-++. .+ +......+ .++.+.. .+..... .+++.++
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 43 457888888887653 3343445545544332 21 11111111 1121111 1111111 1124688
Q ss_pred HHHHHHHHHhhC-CchhH-HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 376 RICCSLLSKLAG-SDSNK-SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 376 ~~al~aL~~La~-~~~~k-~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
..|+.+-+-|.. -+..+ .... ...+|.|+.+|. +++..||..|--+|+-|.
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~--s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLD--SDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 888888877764 34422 2222 356999999999 788999998888877664
No 140
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.20 E-value=15 Score=41.35 Aligned_cols=221 Identities=17% Similarity=0.092 Sum_probs=130.8
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHH--HHH
Q 010533 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEIL--NSG 239 (508)
Q Consensus 162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~--~~a 239 (508)
...-|...++-|++..|+++..-. .+.....+-.+|+.-.+- +-.+....++++..++. ++.+.. -..
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q---~e~akl~~~~aL~~~i~f----~~~~~~~v~~~~~s~~~---~d~~~~en~E~ 562 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQ---FEEAKLKWYHALAGKIDF----PGERSYEVVKPLDSALH---NDEKGLENFEA 562 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHh---chHHHHHHHHHHhhhcCC----CCCchhhhhhhhcchhh---hhHHHHHHHHH
Confidence 455566788899999999988653 334444455555521110 01111233444444443 222222 467
Q ss_pred HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh-cCCHHHHH
Q 010533 240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALV 318 (508)
Q Consensus 240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~-~g~i~~Lv 318 (508)
+.++.|+++.++..|+.|.+.-+++.+-+.+...+...++.+...+.||..... =+.+.+++ ...++...
T Consensus 563 L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~---------~~e~si~e~~~~l~~w~ 633 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL---------LYERSIVEYKDRLKLWN 633 (748)
T ss_pred HHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH---------HHHHHhhccccCchHHH
Confidence 788899999999999998877667765555554444667778888888876432 25566775 35666666
Q ss_pred HHHhcCCChhHHHHHHHHHHHhhcChhh-HhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHH
Q 010533 319 HSLHAGLSSPSLISASIALKAVAVNDEI-CKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAI 395 (508)
Q Consensus 319 ~lL~~~~d~~~~~~a~~aL~~La~~~e~-~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~I 395 (508)
..+.. .+...-...+.++..++...++ |..+. -.-+...++.++.+. +..+++-.+..+.++.+ ..+....+
T Consensus 634 ~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~----~~~~qhrgl~~~ln~~~~~~ei~~~~ 708 (748)
T KOG4151|consen 634 LNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE----DDEIQHRGLVIILNLFEALFEIAEKI 708 (748)
T ss_pred HHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc----hhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 66654 2332333445556556665444 44233 345677788877754 23788888888877654 33444445
Q ss_pred HhCCcHHHHHH
Q 010533 396 IENGGMDKLIV 406 (508)
Q Consensus 396 v~~Ggl~~Lv~ 406 (508)
.....++.+..
T Consensus 709 ~~~~~~~~l~~ 719 (748)
T KOG4151|consen 709 FETEVMELLSG 719 (748)
T ss_pred ccchHHHHHHH
Confidence 55444444433
No 141
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=89.88 E-value=24 Score=35.79 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHH-HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHH---h--cCChH
Q 010533 147 MGLFDKLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR---T--GGGPK 220 (508)
Q Consensus 147 ~~al~~L~~lc~~~~~~~~r~~i~-~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~---~--~ggi~ 220 (508)
.-|.+-+.++.- .+++|..+- +...--.++.+++..- ++.++|...+-.+..++=. +.+. + -.-+.
T Consensus 167 lfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~v-g~~qlQY~SL~~iw~lTf~----~~~aqdi~K~~dli~ 238 (432)
T COG5231 167 LFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYV-GVKQLQYNSLIIIWILTFS----KECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhcC----HHHHHHHHHHHHHHH
Confidence 344555555554 677775543 4445567888887653 5667777766555554421 1222 1 23466
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh--hhHHHHHHcCcHHHHHHHHhcC--ChHHHHHHHHHHHH--------h
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNE--VVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRV--------L 288 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e--~nr~~i~~~G~i~~Lv~lL~~~--~~~~~~~A~~aL~~--------L 288 (508)
.|+.+.+.. ...+|...++..+.+++.+.+ .....+...++.+ -+++|... +++-+..-..-++. |
T Consensus 239 dli~iVk~~-~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k-~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 239 DLIAIVKER-AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISK-CVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHH-HHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 677776542 346788899999999987553 2233344434444 45555432 33222222222221 2
Q ss_pred cCCCcchhhh--------------hhcchHHHHHHhc--CCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHh
Q 010533 289 LTPDDDQVVA--------------SQVYGYARRFAKI--GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVA 351 (508)
Q Consensus 289 ~~~dd~r~~~--------------~~a~~~~~~i~~~--g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~ 351 (508)
|.-|....+. +-=+.|...+.+. ..+..|.++|+...+...+.-||.-+..+.. .+|....+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 2111111110 1123566666643 4688999999875433345567777777665 788888888
Q ss_pred hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC
Q 010533 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG 387 (508)
Q Consensus 352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~ 387 (508)
.-||-..++++|.+. + .+|.=+|+.++..+-+
T Consensus 397 Kyg~k~~im~L~nh~-d---~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHD-D---DDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCC-C---chhhHHHHHHHHHHHh
Confidence 999999999999853 3 3899999999887653
No 142
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.65 E-value=15 Score=35.88 Aligned_cols=151 Identities=14% Similarity=0.229 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (508)
Q Consensus 236 ~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~ 310 (508)
...++..+..++ .|++.|..|..+..--.|-..|...+. +.++ .+.+++..|...||.-+ .+.+..
T Consensus 96 VcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV--------i~fLl~ 166 (293)
T KOG3036|consen 96 VCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV--------IRFLLT 166 (293)
T ss_pred HHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH--------HHHHHH
Confidence 345555555554 578899999999887777777775432 5444 57888999998776433 455668
Q ss_pred cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChh----hHhHHhhcCCHHHHHHHH-hccCCCCcHHHHHHHHHHHHHh
Q 010533 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDE----ICKSVAENGGIDALLRCI-DDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e----~~~~i~e~Ggi~~Lv~lL-~~~~~~~~~~v~~~al~aL~~L 385 (508)
.+.+|..+..+..|+.. .+.-+..-+..+-.+|. .|+...+=-.|..+++-| ..-.+.++..+.+.++.+.-+|
T Consensus 167 TeIVPlCLrime~GSel-SKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 167 TEIVPLCLRIMESGSEL-SKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred hhhHHHHHHHHhcccHH-HHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 89999999999988632 22222233333333331 233222222222222211 1111234568888888888888
Q ss_pred hCCchhHHHHH
Q 010533 386 AGSDSNKSAII 396 (508)
Q Consensus 386 a~~~~~k~~Iv 396 (508)
+.++..+.++.
T Consensus 246 sdnprar~aL~ 256 (293)
T KOG3036|consen 246 SDNPRARAALR 256 (293)
T ss_pred cCCHHHHHHHH
Confidence 88887777665
No 143
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.64 E-value=2.3 Score=33.54 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533 375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (508)
Q Consensus 375 ~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G 443 (508)
++.+++++++++..+..-.-+-+.+.++.++++... ++...++--+..+|.-++ ++.+-++.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis-~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLIS-STEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 578999999999888888878788999999999874 456788888888888888 5777777776665
No 144
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.55 E-value=1.9 Score=33.93 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCC
Q 010533 330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENG 399 (508)
Q Consensus 330 ~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~G 399 (508)
++.+.|++++++..+.-...+.+.+.++.++++...++- ..++-.|+.+|.-++...+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---LSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---cchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 567889999999988777777788899999999886533 3799999999999999988888877765
No 145
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.52 E-value=28 Score=35.89 Aligned_cols=204 Identities=11% Similarity=0.078 Sum_probs=131.9
Q ss_pred HHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCc-chhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHH
Q 010533 256 SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD-DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS 334 (508)
Q Consensus 256 ~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd-~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~ 334 (508)
.+...|.+..|+..|..-+=+..+.++....++....- .+. ......+.. ..-+.|..++....++++--.+.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~-----~p~v~yl~~-~~peil~~L~~gy~~~dial~~g 144 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRS-----PPTVDYLER-HRPEILDILLRGYENPDIALNCG 144 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB-------HHHHHHHT---THHHHHHHHGGGSTTTHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCC-----CchHHHHHh-CCHHHHHHHHHHhcCccccchHH
Confidence 44556888888888876555778888877777765431 111 012334442 11233333333333455444444
Q ss_pred HHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCchhHHHHHhCC---cHHHHHHHHhc
Q 010533 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENG---GMDKLIVVSAR 410 (508)
Q Consensus 335 ~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~G---gl~~Lv~lL~~ 410 (508)
..|+.....+..++.+.....+..+.+.+.. ++.+|...|+..++.| ..+........... .....-.+|.
T Consensus 145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~- 219 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILYSECFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE- 219 (335)
T ss_dssp HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-
T ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 4556666677778888887777777766653 3679999999999996 56777666666544 3567777887
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 411 FSDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 411 ~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+++--.+++++-.|..|-+ ++.|...+... .-+..++.+|+. .+..+|-+|--...-.++
T Consensus 220 -s~NYvtkrqslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d--~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 220 -SSNYVTKRQSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRD--KSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp --SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH
T ss_pred -CCCeEeehhhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHh
Confidence 7889999999999999986 77777655542 235566666754 457799999888877776
No 146
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.25 E-value=27 Score=41.35 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=48.7
Q ss_pred hhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch-hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 351 ~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
++.+-+|.|...|.+..+ -|+..|+++|.-|....- -|.++.+ .+....-+|- | .+..|+..+|+.|+.++
T Consensus 653 ~seyllPLl~Q~ltD~EE----~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~-h-PN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEE----AVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLC-H-PNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHHHHhccCcch----hhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhhee-C-chHHHHHHHHHHHHHHH
Confidence 355667888888887522 689999999999875432 2333332 3344444454 3 57899999999999887
Q ss_pred c
Q 010533 430 L 430 (508)
Q Consensus 430 ~ 430 (508)
.
T Consensus 725 ~ 725 (1431)
T KOG1240|consen 725 R 725 (1431)
T ss_pred h
Confidence 3
No 147
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.13 E-value=43 Score=37.60 Aligned_cols=184 Identities=12% Similarity=0.090 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 010533 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (508)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~ 342 (508)
-+-++.+|.+..+-+..-|..+|..+... |-..+- -++|.|++-|.+ +|+.++..+..+++.||.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLk------------YPeAlr--~~FprL~EkLeD-pDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLK------------YPEALR--PCFPRLVEKLED-PDPSVVSAAVSVICELAR 210 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh------------hhHhHh--hhHHHHHHhccC-CCchHHHHHHHHHHHHHh
Confidence 34567777776555666677666655421 112222 468889888876 589999999999999998
Q ss_pred -ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhc----------
Q 010533 343 -NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSAR---------- 410 (508)
Q Consensus 343 -~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~---------- 410 (508)
++.++-.+. |.+.++|.++.. ..++-..+.+.++|+- -|.... --+|+|.++|++
T Consensus 211 KnPknyL~LA-----P~ffkllttSsN---NWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYEC 277 (877)
T KOG1059|consen 211 KNPQNYLQLA-----PLFYKLLVTSSN---NWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYEC 277 (877)
T ss_pred hCCccccccc-----HHHHHHHhccCC---CeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHH
Confidence 677776654 788899987543 2677777888888874 232221 245667666652
Q ss_pred ------------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 411 ------------FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 411 ------------~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
++++.....-|+.=|+.++..+..|-+-+ |.-.+-.++++||. -||..-=..|+.|.-..+.
T Consensus 278 vNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYl----gLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~S 351 (877)
T KOG1059|consen 278 VNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYL----GLLAMSKILKTHPK--AVQAHKDLILRCLDDKDES 351 (877)
T ss_pred HHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHH----HHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCch
Confidence 11222222233333333433333333332 34455556666653 4555555566666544443
Q ss_pred ch
Q 010533 479 NS 480 (508)
Q Consensus 479 ~~ 480 (508)
.|
T Consensus 352 IR 353 (877)
T KOG1059|consen 352 IR 353 (877)
T ss_pred hH
Confidence 33
No 148
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.85 E-value=33 Score=37.54 Aligned_cols=198 Identities=14% Similarity=0.006 Sum_probs=110.6
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH-----HHHHHHHhcCCCc
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS-----LYDAIRVLLTPDD 293 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~-----A~~aL~~L~~~dd 293 (508)
.+.+.++|. .....-+..+.+.++-+..+. .-+.+.+.+.+..|-...+.......+. ...+..+|..
T Consensus 136 l~~l~~ll~--~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~--- 208 (569)
T KOG1242|consen 136 LELLLELLT--STKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP--- 208 (569)
T ss_pred HHHHHHHhc--cccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC---
Confidence 345555665 233444445555555443221 2234455667777777766543322221 1111222221
Q ss_pred chhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC--hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH-HHHhccCCCC
Q 010533 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLS--SPSLISASIALKAVAVNDEICKSVAENGGIDALL-RCIDDSGLQG 370 (508)
Q Consensus 294 ~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d--~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv-~lL~~~~~~~ 370 (508)
..+-+.++.+-.++.++.| ..+...+..+...+.. ....+|++.++ .++..-.+.
T Consensus 209 --------------~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~-------~~~~~aVK~llpsll~~l~~~- 266 (569)
T KOG1242|consen 209 --------------PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR-------CLSAYAVKLLLPSLLGSLLEA- 266 (569)
T ss_pred --------------CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH-------hcCcchhhHhhhhhHHHHHHH-
Confidence 1133456777777776654 4455544444433322 12234544433 222211111
Q ss_pred cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHH
Q 010533 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPENAARAMEAGSGDLA 448 (508)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~--~~~~~~~~i~~~G~i~~L 448 (508)
.+.-...++.+|+.++.+..-.-...-...+|.+.+.|. ...+.|++.+..+|..++. +|++... .+|.|
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~--DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~L 338 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW--DTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTL 338 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc--cCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHH
Confidence 234556888899988877666666777789999999998 6789999999999999874 4554222 46888
Q ss_pred HHHHH
Q 010533 449 IQAML 453 (508)
Q Consensus 449 v~~L~ 453 (508)
++++.
T Consensus 339 ld~l~ 343 (569)
T KOG1242|consen 339 LDALA 343 (569)
T ss_pred HHHhc
Confidence 88884
No 149
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=88.48 E-value=35 Score=35.78 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHhh-cCCcchhHHHhcCChHHHHHHHhcCC---CCHHHHHHHHHHHHHhhcCChhhHHHHH-HcCcH
Q 010533 189 SKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYM-ELKID 263 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~-~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~l~~~~e~nr~~i~-~~G~i 263 (508)
|.++...+++.|+++. +.+.-+..+.+......+++.+.... --..+...-++.|--+..-+...|..++ +.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4566666777777664 22222344555444444444332110 0122333444444444344556777765 88999
Q ss_pred HHHHHHHhcCCh---------------HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc-----
Q 010533 264 ELILEILSRQRN---------------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA----- 323 (508)
Q Consensus 264 ~~Lv~lL~~~~~---------------~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~----- 323 (508)
+.+...|...-. ...-++..+++|++.+.+.-+....++. .+.+. +.+...+..+..
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~-~r~l~--~llr~cl~~vT~~~~~~ 266 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQ-ARHLT--ILLRHCLLIVTLRDSTE 266 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHH-HHHHH--HHHHHHHhhccccchHH
Confidence 999999975311 1112344556677765443221111110 11111 122222222221
Q ss_pred ----CCC---hhHHHHHHHHHHHhhcChhhHhH-HhhcC--CHHHHHHHHhccC-----CCCcHHHHHHHHHHHHHhhCC
Q 010533 324 ----GLS---SPSLISASIALKAVAVNDEICKS-VAENG--GIDALLRCIDDSG-----LQGNKTVARICCSLLSKLAGS 388 (508)
Q Consensus 324 ----~~d---~~~~~~a~~aL~~La~~~e~~~~-i~e~G--gi~~Lv~lL~~~~-----~~~~~~v~~~al~aL~~La~~ 388 (508)
+.. +.+....|.++...- ..|+|.. +..-. -++++..+|.... +....+++...+.+|..+|..
T Consensus 267 elhshav~~L~nv~~k~~~~~~~~~-p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~ 345 (532)
T KOG4464|consen 267 ELHSHAVNLLDNVPEKCLDVLAGAK-PHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARS 345 (532)
T ss_pred HHhhccCCccCCchhhhhhcccCCC-CcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhh
Confidence 110 122233333321111 2233332 22112 2445555554321 112357888999999999998
Q ss_pred chhHHHHHhCCcHHHHHHHHhc
Q 010533 389 DSNKSAIIENGGMDKLIVVSAR 410 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~ 410 (508)
+.+.+...+...+|+|.++=++
T Consensus 346 ~R~~Rkylr~qVLPPLrDV~~R 367 (532)
T KOG4464|consen 346 HRVMRKYLRQQVLPPLRDVSQR 367 (532)
T ss_pred hHHHHHHHHHhcCCchhhhhcC
Confidence 8888888888899999877664
No 150
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.39 E-value=2.2 Score=42.13 Aligned_cols=167 Identities=11% Similarity=0.076 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcC--CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG--GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~G--gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (508)
+..+..++.+.+. +-+..+...++-++.++.....+...+ ....+..++....+......+--++++|.|+..++..
T Consensus 65 ~~~~~~~~~~Wp~-~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSWPP-ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS-C-CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCCC-ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 3444455544432 223444444444444554444443332 2456666666544334457778899999999999888
Q ss_pred HHHHHhCCcHHHHHHHHhccCC-----CHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533 392 KSAIIENGGMDKLIVVSARFSD-----DASVLQEVMSIITVLSLRSPENA-ARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~lL~~~~~-----~~~v~e~a~~aL~~La~~~~~~~-~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A 465 (508)
+..+.+... ..+++.+..... +..++-.++..+.|++....... ..=.....+..+++.+.....++++.-.+
T Consensus 144 ~~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 888875443 244444433222 57788888888889875211111 00000112455555444454678888889
Q ss_pred HHHHHHhhhcCccchHH
Q 010533 466 CFMIRNLVARNPENSFC 482 (508)
Q Consensus 466 ~~aL~nL~~~~~e~~~~ 482 (508)
..||.+++...++....
T Consensus 223 LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHhccChhHHHH
Confidence 99999999755544433
No 151
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=88.14 E-value=58 Score=37.82 Aligned_cols=186 Identities=10% Similarity=0.073 Sum_probs=93.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC-hhHH-HHHHHHHHHhhc
Q 010533 265 LILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-SPSL-ISASIALKAVAV 342 (508)
Q Consensus 265 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d-~~~~-~~a~~aL~~La~ 342 (508)
.+++.+++++.++..+|.-||.+++.+.-+ ..+|-+++.+.+.+. ..++ -..-..|.....
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~-----------------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv 923 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLP-----------------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASV 923 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchH-----------------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc
Confidence 455666666666666666777776654311 235666665554321 1111 111111222221
Q ss_pred ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH
Q 010533 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM 422 (508)
Q Consensus 343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~ 422 (508)
+ .. ...++.++.+|-.+.+......+.-...+|+.|+..+.- .-+|.|-..+. ++.+..+--++
T Consensus 924 d-~~------~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe-------sLlpkL~~~~~--S~a~~~rs~vv 987 (1233)
T KOG1824|consen 924 D-GL------KPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE-------SLLPKLKLLLR--SEASNTRSSVV 987 (1233)
T ss_pred c-hh------hhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH-------HHHHHHHHHhc--CCCcchhhhhh
Confidence 1 00 112344555554443322112333334445555432211 23567777776 66677777777
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533 423 SIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV 486 (508)
Q Consensus 423 ~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~ 486 (508)
.++.-.-...|.-...+... .+.-.+.+++. .+..|++.|..++...+.+-|...+-++.+
T Consensus 988 savKfsisd~p~~id~~lk~-~ig~fl~~~~d--pDl~VrrvaLvv~nSaahNKpslIrDllpe 1048 (1233)
T KOG1824|consen 988 SAVKFSISDQPQPIDPLLKQ-QIGDFLKLLRD--PDLEVRRVALVVLNSAAHNKPSLIRDLLPE 1048 (1233)
T ss_pred heeeeeecCCCCccCHHHHH-HHHHHHHHHhC--CchhHHHHHHHHHHHHHccCHhHHHHHHHH
Confidence 76665444555555544433 34444566654 357888888888866555556665555543
No 152
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.83 E-value=55 Score=37.20 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC--CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHH
Q 010533 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (508)
Q Consensus 188 ~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~ 265 (508)
+++-++++|+.+|+++-- .+ ..|.++-..+.- ...+-|...|+.+|-.+=+-..+.+..+.+ .
T Consensus 120 pN~LiRasALRvlSsIRv------p~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~ 184 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRV------PM----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----V 184 (968)
T ss_pred CcHHHHHHHHHHHHhcch------hh----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----H
Confidence 456677777777766421 00 112222222211 235678888888887775555666665543 4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhc
Q 010533 266 ILEILSRQRNDSIQSLYDAIRVLL 289 (508)
Q Consensus 266 Lv~lL~~~~~~~~~~A~~aL~~L~ 289 (508)
+-.+|...++-++..|..|.-.+|
T Consensus 185 I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 185 IKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred HHHHhcCCCCcchhHHHHHHHHhc
Confidence 555666666677788887777776
No 153
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=86.58 E-value=10 Score=36.45 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=78.7
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHCCcHHHH-HH-------HHhccc--CCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC
Q 010533 149 LFDKLIELCGGNEGSVNAAVATKNGGVELV-CS-------ICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGG 218 (508)
Q Consensus 149 al~~L~~lc~~~~~~~~r~~i~~~Gavp~L-v~-------lL~~~~--~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg 218 (508)
++.+|.+.-++ ++.-...+-...+++.. ++ +|+... .....-.++++..|-.++...+.+..|+++..
T Consensus 65 aL~EL~rkreq--~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaShPetk~~Fl~Ahi 142 (315)
T COG5209 65 ALDELFRKREQ--SPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLASHPETKKVFLDAHI 142 (315)
T ss_pred HHHHHHHHHhc--CCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhcCcchheeeeeccc
Confidence 78887776655 55554455555666542 21 222211 12234578888888888888777788888887
Q ss_pred hHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCCh-hhHHHHHHcCcHHHHHHHHhcCCh
Q 010533 219 PKLLVNILID---GNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSRQRN 275 (508)
Q Consensus 219 i~~Lv~lL~~---~~~~~~v~~~a~~~L~~l~~~~e-~nr~~i~~~G~i~~Lv~lL~~~~~ 275 (508)
.-.+-.+|.. ++.-.-+.-.++.+++.+...+. ..-..+....++|++++++..+++
T Consensus 143 plflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSE 203 (315)
T COG5209 143 PLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSE 203 (315)
T ss_pred ceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhH
Confidence 6555555543 33344566677788888754333 233444566899999999988764
No 154
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.22 E-value=5 Score=36.49 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=84.0
Q ss_pred HHHHHHHHhc-CCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchh
Q 010533 314 ARALVHSLHA-GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSN 391 (508)
Q Consensus 314 i~~Lv~lL~~-~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~ 391 (508)
++.++.-|.. ...+++...+..++..+- +.......+ -.-+.+-..+.... . +-...++.+|..|- +.++.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~-~---d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGE-M---DSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHH-C---CHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHcccc-c---hhHHHHHHHHHHHhCCCHHH
Confidence 3344444443 223456666666665553 222221111 01133444454332 2 24456777777774 56676
Q ss_pred HHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH-HHHHHHHHH
Q 010533 392 KSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMI 469 (508)
Q Consensus 392 k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~-vq~~A~~aL 469 (508)
...+. ..|.++.++.++.+++.+..++..++-+|..=|. +...+..|. ..+++.|-+..+.. .+.. ++--|+..|
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~-~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNS-KDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTC-C-HH-CHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccc-cchHHHHHHHHHHH
Confidence 66665 6677899999998777888898888888888774 555555555 55778888887544 3344 555565555
Q ss_pred H
Q 010533 470 R 470 (508)
Q Consensus 470 ~ 470 (508)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 4
No 155
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=85.86 E-value=54 Score=35.18 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHhhcCCh---hhHHHHHHcCcHHHHHHHHhcCCh------HHHHH-HHHHHHHhcCCCcchhhhhhcc
Q 010533 233 PEILNSGFAVVAASATGNE---VVKESYMELKIDELILEILSRQRN------DSIQS-LYDAIRVLLTPDDDQVVASQVY 302 (508)
Q Consensus 233 ~~v~~~a~~~L~~l~~~~e---~nr~~i~~~G~i~~Lv~lL~~~~~------~~~~~-A~~aL~~L~~~dd~r~~~~~a~ 302 (508)
.+-+-.++-.+...+...+ .||+.+.++=|.+-+-++|++++. .+.+. +...|...|.+.+.. +|
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA-----sh 99 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA-----SH 99 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc-----cC
Confidence 3445556666666654333 467788888888889899987431 44444 566677777665431 12
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCChh------HHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc
Q 010533 303 GYARRFAKIGIARALVHSLHAGLSSP------SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (508)
Q Consensus 303 ~~~~~i~~~g~i~~Lv~lL~~~~d~~------~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~ 365 (508)
+.++ +.||.|.+.+..+.|++ .+.++-.+|..++..+.--+.++..||++.+-++-.-
T Consensus 100 ---~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 100 ---EEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred ---HHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 2344 46999999999876554 7788889999999988778889999999999876543
No 156
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=12 Score=42.28 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=96.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHh
Q 010533 272 RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVA 351 (508)
Q Consensus 272 ~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~ 351 (508)
+.+..++.++|.++..|+--.+ . .+.+++|+.+|+++. +++.-+...+..++... +.+.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~-----------~-----~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~---~~lF 356 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQ-----------V-----TKIAKALVRLLRSNR--EVQYVVLQNIATISIKR---PTLF 356 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHH-----------H-----HHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcc---hhhh
Confidence 3344778888888888873211 1 134789999998754 34444444444454321 1111
Q ss_pred hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHh
Q 010533 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLS 429 (508)
Q Consensus 352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La 429 (508)
-|.+-++.-...|. ..+..-=+..|.+|+. ++-+..+++=++.| +.+..+...++.+|...+
T Consensus 357 ----~P~lKsFfv~ssDp--~~vk~lKleiLs~La~----------esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 357 ----EPHLKSFFVRSSDP--TQVKILKLEILSNLAN----------ESNISEILRELQTYIKSSDRSFAAAAVKAIGRCA 420 (968)
T ss_pred ----hhhhhceEeecCCH--HHHHHHHHHHHHHHhh----------hccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 12333333222221 1233333566777663 23333333333322 344457777788888777
Q ss_pred cCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 430 LRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 430 ~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
.+.-.... -.+..|+.+|+.| ++.|..++...|+-|..++|...-.++.
T Consensus 421 ~~~~sv~~-----tCL~gLv~Llssh--de~Vv~eaV~vIk~Llq~~p~~h~~ii~ 469 (968)
T KOG1060|consen 421 SRIGSVTD-----TCLNGLVQLLSSH--DELVVAEAVVVIKRLLQKDPAEHLEILF 469 (968)
T ss_pred HhhCchhh-----HHHHHHHHHHhcc--cchhHHHHHHHHHHHHhhChHHHHHHHH
Confidence 65443333 2456788999887 5788889999999999888766644443
No 157
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=85.25 E-value=41 Score=33.28 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHH
Q 010533 329 SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVS 408 (508)
Q Consensus 329 ~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL 408 (508)
.+-.++.+++.|-.. -.|+.|.+.|.+..+++ .|..+|+.+|+.+++. .+++.|.+.+
T Consensus 203 frhEvAfVfGQl~s~----------~ai~~L~k~L~d~~E~p--MVRhEaAeALGaIa~e----------~~~~vL~e~~ 260 (289)
T KOG0567|consen 203 FRHEVAFVFGQLQSP----------AAIPSLIKVLLDETEHP--MVRHEAAEALGAIADE----------DCVEVLKEYL 260 (289)
T ss_pred HHHHHHHHHhhccch----------hhhHHHHHHHHhhhcch--HHHHHHHHHHHhhcCH----------HHHHHHHHHc
Confidence 345677777766543 25788999998876654 8999999999998743 3556666666
Q ss_pred hccCCCHHHHHHHHHHHHHHh
Q 010533 409 ARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 409 ~~~~~~~~v~e~a~~aL~~La 429 (508)
. ..++-|++.+..+|-.+-
T Consensus 261 ~--D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 261 G--DEERVVRESCEVALDMLE 279 (289)
T ss_pred C--CcHHHHHHHHHHHHHHHH
Confidence 5 334456666655655443
No 158
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.14 E-value=19 Score=39.87 Aligned_cols=141 Identities=12% Similarity=0.133 Sum_probs=75.7
Q ss_pred CHHHHHHHHhcCC---ChhHHHHHHHHHHHhh----cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 313 IARALVHSLHAGL---SSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 313 ~i~~Lv~lL~~~~---d~~~~~~a~~aL~~La----~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
.+..+..++++.. .+.+...+..++++|. .+.+.|...+-..-++.+.+.|.......+.+-....+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 3566667666432 2334444555555554 33333321111123455665555421112224445566667665
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533 386 AGSDSNKSAIIENGGMDKLIVVSA-RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (508)
Q Consensus 386 a~~~~~k~~Iv~~Ggl~~Lv~lL~-~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~ 464 (508)
... ..++.|...+. ....+..++..|+++|..++...|+..+ +.++.+......+.+++-.
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence 321 12344444443 3334578999999999999866665433 4456666666667777777
Q ss_pred HHHHHHH
Q 010533 465 SCFMIRN 471 (508)
Q Consensus 465 A~~aL~n 471 (508)
|+.+|-.
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 7766654
No 159
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=84.76 E-value=48 Score=37.80 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (508)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L 428 (508)
.|.+.|.-++.+|-.- .+..+.+.|.+..+..++. ..+|.|..+|..+|..+
T Consensus 142 yVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 142 YVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVA--DSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhh--CCCchHHHHHHHHHHHh
Confidence 4444444444444211 1222333344444444443 34444444444444444
No 160
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=84.72 E-value=67 Score=35.28 Aligned_cols=270 Identities=13% Similarity=0.049 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHH
Q 010533 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT 199 (508)
Q Consensus 120 v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~a 199 (508)
+..++..|+.+|.+. .......|++.|.+++.. .|+-. -. +-|-+=+|..+ .+..+...|+++
T Consensus 301 ~~~~vs~L~~fL~s~-------rv~~rFsA~Riln~lam~--~P~kv-~v----cN~evEsLIsd---~Nr~IstyAITt 363 (898)
T COG5240 301 VDQTVSSLRTFLKST-------RVVLRFSAMRILNQLAMK--YPQKV-SV----CNKEVESLISD---ENRTISTYAITT 363 (898)
T ss_pred HHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHhh--CCcee-ee----cChhHHHHhhc---ccccchHHHHHH
Confidence 445677777777765 566667778888777765 44311 00 11122222222 233444444444
Q ss_pred HHHhhcCCcchhHHHhcCChHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-H
Q 010533 200 MALLVHDVQSTETFRTGGGPKLLVNILIDGN--EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-D 276 (508)
Q Consensus 200 La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~--~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~ 276 (508)
|.- .|.+ ..|..|+.++-..- -+......++.+++.+|..-+.-+..+ +.-|...|...+. +
T Consensus 364 LLK--TGt~--------e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~-----l~FL~~~L~~eGg~e 428 (898)
T COG5240 364 LLK--TGTE--------ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY-----LDFLGSSLLQEGGLE 428 (898)
T ss_pred HHH--cCch--------hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH-----HHHHHHHHHhcccch
Confidence 332 1211 12333333322110 011112233444555555555444433 3445555554333 5
Q ss_pred HHHHHHHHHHHhcCCC-cchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCC
Q 010533 277 SIQSLYDAIRVLLTPD-DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG 355 (508)
Q Consensus 277 ~~~~A~~aL~~L~~~d-d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Gg 355 (508)
..+.+..+|.-+...+ +. +..+++.|+..+.++.-+.+.......|+.=.-...+-...
T Consensus 429 FK~~~Vdaisd~~~~~p~s---------------kEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~y----- 488 (898)
T COG5240 429 FKKYMVDAISDAMENDPDS---------------KERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKY----- 488 (898)
T ss_pred HHHHHHHHHHHHHhhCchH---------------HHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchH-----
Confidence 5555666665444322 21 11345666666666544445455544443221111111111
Q ss_pred HHHHH-HHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 356 IDALL-RCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 356 i~~Lv-~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
|..+. +++-. |.-|...|+.+|...+.+-+.+ +.-......|-++++ ..+.+|++.|.-.|.+|-. .+
T Consensus 489 vrhIyNR~iLE-----N~ivRsaAv~aLskf~ln~~d~--~~~~sv~~~lkRcln--D~DdeVRdrAsf~l~~~~~--~d 557 (898)
T COG5240 489 VRHIYNRLILE-----NNIVRSAAVQALSKFALNISDV--VSPQSVENALKRCLN--DQDDEVRDRASFLLRNMRL--SD 557 (898)
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHHHhccCcccc--ccHHHHHHHHHHHhh--cccHHHHHHHHHHHHhhhh--hh
Confidence 11122 22211 2367888999998887542211 111112235556666 5578999999999999863 33
Q ss_pred hHHHHHhc---CcHHHHHHHH
Q 010533 435 NAARAMEA---GSGDLAIQAM 452 (508)
Q Consensus 435 ~~~~i~~~---G~i~~Lv~~L 452 (508)
.+..+++. |-+|.+..-+
T Consensus 558 a~~pl~~sd~~~dipsle~~l 578 (898)
T COG5240 558 ACEPLFSSDELGDIPSLELEL 578 (898)
T ss_pred hhhccccccccCCcchhHHhh
Confidence 34444433 4455555444
No 161
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.71 E-value=2 Score=27.48 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 401 MDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+|.++++++ .+++.|+..|+.+|..|+.
T Consensus 2 lp~l~~~l~--D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLN--DPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT---SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHHHh
Confidence 688999998 7789999999999999874
No 162
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=84.47 E-value=4.1 Score=46.21 Aligned_cols=193 Identities=11% Similarity=0.081 Sum_probs=118.3
Q ss_pred HhhcCChhhHHHHHHcCcHHHHHHHHhcCCh------HHHHHHHHHHHHhcCCCcchhhh-hhcchHHHHHHhcCCHHHH
Q 010533 245 ASATGNEVVKESYMELKIDELILEILSRQRN------DSIQSLYDAIRVLLTPDDDQVVA-SQVYGYARRFAKIGIARAL 317 (508)
Q Consensus 245 ~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~------~~~~~A~~aL~~L~~~dd~r~~~-~~a~~~~~~i~~~g~i~~L 317 (508)
++..+-|..|+.-+..|+.+..+.-++.+.. +.....||-+-.+..-- ..| +...+-+..+.+.+++..+
T Consensus 530 Hl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~g---p~f~~~~w~~aenflkls~v~~~ 606 (1516)
T KOG1832|consen 530 HLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLG---PTFVKAQWPAAENFLKLSGVVTM 606 (1516)
T ss_pred HHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhC---hhhhhhcchHHHHHHHhHHHHHH
Confidence 3445566667777777777777775554321 45555666555443211 112 2233455667778999999
Q ss_pred HHHHhcCCC-------hhHHHHHHHHHHHhhcChhhHhHHhh-------c-CCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533 318 VHSLHAGLS-------SPSLISASIALKAVAVNDEICKSVAE-------N-GGIDALLRCIDDSGLQGNKTVARICCSLL 382 (508)
Q Consensus 318 v~lL~~~~d-------~~~~~~a~~aL~~La~~~e~~~~i~e-------~-Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL 382 (508)
+++.....+ .+.+..+..+|.-+..-++....++. + .|+..|+..-.-.....+++++..|+.+|
T Consensus 607 L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vI 686 (1516)
T KOG1832|consen 607 LELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVI 686 (1516)
T ss_pred HHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhh
Confidence 998775432 14455566666555555555544442 2 26666665543333334689999999999
Q ss_pred HHhhC-CchhH-----------------------------------HHHHhCCcHHHHHHHHhccC---CCHHHHHHHHH
Q 010533 383 SKLAG-SDSNK-----------------------------------SAIIENGGMDKLIVVSARFS---DDASVLQEVMS 423 (508)
Q Consensus 383 ~~La~-~~~~k-----------------------------------~~Iv~~Ggl~~Lv~lL~~~~---~~~~v~e~a~~ 423 (508)
-|+.. .|+++ .++....||..|+.+|+-.. .-..++.-||.
T Consensus 687 incVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~ 766 (1516)
T KOG1832|consen 687 INCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACR 766 (1516)
T ss_pred heeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 99853 33432 23444578999999997211 12468999999
Q ss_pred HHHHHhcCChhhHHHHHh
Q 010533 424 IITVLSLRSPENAARAME 441 (508)
Q Consensus 424 aL~~La~~~~~~~~~i~~ 441 (508)
+|.-|+ |++..++-+..
T Consensus 767 ~L~GLa-R~~tVrQIltK 783 (1516)
T KOG1832|consen 767 VLLGLA-RDDTVRQILTK 783 (1516)
T ss_pred HHhccc-cCcHHHHHHHh
Confidence 999999 78887776544
No 163
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.79 E-value=26 Score=39.42 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHH
Q 010533 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (508)
Q Consensus 188 ~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv 267 (508)
.++.++..|+.++..+-.+. +..-...++.+.|+ .+++.++..+.-++..+ +.-+.+.....|.++.|.
T Consensus 98 ~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl---~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKL---FDIDPDLVEDSGLVDALK 166 (734)
T ss_pred CCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhcc--CCChhHHHHHHHHHHHh---hcCChhhccccchhHHHH
Confidence 45666666666665543221 11223455666665 34667776666666554 344567777889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCC
Q 010533 268 EILSRQRNDSIQSLYDAIRVLLTPD 292 (508)
Q Consensus 268 ~lL~~~~~~~~~~A~~aL~~L~~~d 292 (508)
.++...+..++.+|.++|..+...+
T Consensus 167 ~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 167 DLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHhcCCCchHHHHHHHHHHHHHHhC
Confidence 9998655688899988888876443
No 164
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.36 E-value=55 Score=35.79 Aligned_cols=196 Identities=13% Similarity=0.155 Sum_probs=110.3
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH---HHHHH
Q 010533 261 KIDELILEILSRQRNDSIQSLYDAIRVLL-TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI---SASIA 336 (508)
Q Consensus 261 G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~-~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~---~a~~a 336 (508)
..++.++.-+.++....+..|.--|.... ...+. -...-+|++..++.++.+........ ..-..
T Consensus 250 ~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-----------~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~ 318 (675)
T KOG0212|consen 250 DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-----------LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGL 318 (675)
T ss_pred cchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-----------hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHH
Confidence 47788888888776666655533333322 11110 01113355666666555432211211 11122
Q ss_pred HHHhhcChhhHhHHhhcC-CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCH
Q 010533 337 LKAVAVNDEICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDA 415 (508)
Q Consensus 337 L~~La~~~e~~~~i~e~G-gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~ 415 (508)
|..+...+...+. ++-| .++.+.+.+.+.. .+..-.++.-+..|-..-.++-..-.....+.|+..|. ..+.
T Consensus 319 l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~----~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLs--d~sd 391 (675)
T KOG0212|consen 319 LLKLVSSERLKEE-IDYGSIIEVLTKYLSDDR----EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLS--DRSD 391 (675)
T ss_pred HHHHHhhhhhccc-cchHHHHHHHHHHhhcch----HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhc--Cchh
Confidence 3334433333333 3333 2455666665432 25566777777766544444444444455678888887 4567
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhhc-CccchH
Q 010533 416 SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCFMIRNLVAR-NPENSF 481 (508)
Q Consensus 416 ~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~-vq~~A~~aL~nL~~~-~~e~~~ 481 (508)
.|...++..|+++|. +++.. |..+.+..+|..+..+.. +...|...||-|+.. ++|..-
T Consensus 392 ~vvl~~L~lla~i~~-s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IY 452 (675)
T KOG0212|consen 392 EVVLLALSLLASICS-SSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIY 452 (675)
T ss_pred HHHHHHHHHHHHHhc-Ccccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHH
Confidence 899999999999996 43322 557777777776665555 455688899998864 666653
No 165
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.25 E-value=12 Score=43.51 Aligned_cols=197 Identities=22% Similarity=0.250 Sum_probs=119.4
Q ss_pred HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHH
Q 010533 240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVH 319 (508)
Q Consensus 240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~ 319 (508)
..+|..+..++++|.+.|.++.|+..++..+-+. +-.......+..|...|-.++ .+..+-.|++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpkqv-------------hhqelmalVd 727 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQV-------------HHQELMALVD 727 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcccc-------------cHHHHHHHHH
Confidence 4556666677888999999998888888887442 222223344555554442222 1123556777
Q ss_pred HHhcCCC-----------hhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhcc------CCCCcHH--------
Q 010533 320 SLHAGLS-----------SPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDS------GLQGNKT-------- 373 (508)
Q Consensus 320 lL~~~~d-----------~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~------~~~~~~~-------- 373 (508)
.|+++-- -+++.+..+++|.+-.-+ .....+.++||...|+..|-.. .+.++.-
T Consensus 728 tLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfki 807 (2799)
T KOG1788|consen 728 TLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKI 807 (2799)
T ss_pred HHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHH
Confidence 7776421 145677778888877644 3445667888887776554311 1111000
Q ss_pred -------------------------------------------------HHH---------------HHHHHHHHh----
Q 010533 374 -------------------------------------------------VAR---------------ICCSLLSKL---- 385 (508)
Q Consensus 374 -------------------------------------------------v~~---------------~al~aL~~L---- 385 (508)
+.+ .||.-+-.+
T Consensus 808 lFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledni 887 (2799)
T KOG1788|consen 808 LFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNI 887 (2799)
T ss_pred HHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccce
Confidence 000 011111100
Q ss_pred -h-----C-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533 386 -A-----G-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453 (508)
Q Consensus 386 -a-----~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~ 453 (508)
+ | ....++.|-.+|++..|++.+- -..+..|-.-+..|..++.-+|.|+......|.++.+++++.
T Consensus 888 favntPsGqfnpdk~~iynagavRvlirslL--lnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 888 FAVNTPSGQFNPDKQKIYNAGAVRVLIRSLL--LNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred eeeccCCCCcCchHhhhcccchhHHHHHHHH--hhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 0 1 0123566777888888888655 345788888888899999889999999888999999988763
No 166
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.18 E-value=63 Score=36.45 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=110.4
Q ss_pred hHHHHHHHhcCCC--CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533 219 PKLLVNILIDGNE--DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (508)
Q Consensus 219 i~~Lv~lL~~~~~--~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~ 296 (508)
++.++.=|+.+.. +.+....++++++.++.+-+.. .++|..|+++++..-+-++++++-.++.+-+--.+..
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY 421 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch
Confidence 3334443443332 5667788999999998776642 6889999999986655566667766766543211110
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHH
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR 376 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~ 376 (508)
. -.++.+..-+.+-.+++...+..|.|+.-+.+=++ ....|-.++....++ .+.|+-
T Consensus 422 ---------~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~--------a~elL~~f~en~~dE-~~~Vql 478 (734)
T KOG1061|consen 422 ---------E-----SVVAILCENLDSLQEPEAKAALIWILGEYAERIEN--------ALELLESFLENFKDE-TAEVQL 478 (734)
T ss_pred ---------h-----hhhhhhcccccccCChHHHHHHHHHHhhhhhccCc--------HHHHHHHHHhhcccc-hHHHHH
Confidence 1 13455555555555788888888988776654222 223344444444333 356666
Q ss_pred HHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 010533 377 ICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA 442 (508)
Q Consensus 377 ~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~ 442 (508)
+.+.+.-.+.. .+..++.++. .++..=..+.+++.++..+..-=+-|. .++..++.++-+
T Consensus 479 ~LLta~ik~Fl~~p~~tq~~l~-----~vL~~~~~d~~~~dlrDr~l~Y~RlLs-~~~~~a~~v~~~ 539 (734)
T KOG1061|consen 479 ELLTAAIKLFLKKPTETQELLQ-----GVLPLATADTDNPDLRDRGLIYWRLLS-EDPLIAKDVVLA 539 (734)
T ss_pred HHHHHHHHHHhcCCccHHHHHH-----HHHhhhhccccChhhhhhHHHHHHHhh-cCHHHHHHHHhc
Confidence 66666555432 3334443332 222222235667888888777666666 577777777644
No 167
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.01 E-value=22 Score=39.47 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=58.1
Q ss_pred hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHH
Q 010533 345 EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS 423 (508)
Q Consensus 345 e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~ 423 (508)
+--..|+..|+.-.++.-|.+. -.+|.++|+..+..||. .+.-.. .++..|++.++ .....|+..|.-
T Consensus 364 ~~~~siI~sGACGA~VhGlEDE----f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN--DE~~~VRL~ai~ 432 (823)
T KOG2259|consen 364 EEEESIIPSGACGALVHGLEDE----FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN--DEIEVVRLKAIF 432 (823)
T ss_pred ccccccccccccceeeeechHH----HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc--cHHHHHHHHHHH
Confidence 3445688889888888888763 23899999999999985 444432 35789999998 556789999999
Q ss_pred HHHHHhc
Q 010533 424 IITVLSL 430 (508)
Q Consensus 424 aL~~La~ 430 (508)
+|..|+.
T Consensus 433 aL~~Is~ 439 (823)
T KOG2259|consen 433 ALTMISV 439 (823)
T ss_pred HHHHHHH
Confidence 9998874
No 168
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.54 E-value=3.3 Score=43.96 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHH-HHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCcchhhhhhcchHHHHHHhc
Q 010533 235 ILNSGFAVVAASATGNEVVKESY-MELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQVYGYARRFAKI 311 (508)
Q Consensus 235 v~~~a~~~L~~l~~~~e~nr~~i-~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~--~dd~r~~~~~a~~~~~~i~~~ 311 (508)
+...|++++..... |+..|... .-..+...++..|.+..-.++..++|++.+++. .+....+-+ ...|.++.
T Consensus 407 v~~aA~Ra~~VyVL-Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s---~~eR~sg~- 481 (728)
T KOG4535|consen 407 VKAAASRALGVYVL-HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS---FQERFSGL- 481 (728)
T ss_pred HHHHHHhhceeEEe-ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH---HHHHHHHH-
Confidence 33445555444432 33333332 233444555555543222566678899998862 111100000 11222221
Q ss_pred CCHHHHHHHHhcCC-C-hhHHHHHHHHHHHhhcChh----hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 312 GIARALVHSLHAGL-S-SPSLISASIALKAVAVNDE----ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 312 g~i~~Lv~lL~~~~-d-~~~~~~a~~aL~~La~~~e----~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
.|..++.+..... + ..+..++..+|+|+..-=+ .--.....|.+..++...- -.....|+.++|-+++||
T Consensus 482 -ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~---~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 482 -LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL---TEAAMKVRWNACYAMGNL 557 (728)
T ss_pred -HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee---cccccccchHHHHHHHHh
Confidence 2334444333222 2 3467788888888764211 0011112222222222211 122458999999999999
Q ss_pred hCCchhHHHHHh-CC-cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533 386 AGSDSNKSAIIE-NG-GMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431 (508)
Q Consensus 386 a~~~~~k~~Iv~-~G-gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~ 431 (508)
..|+..+-.=.. +| ..+.|..++..| .+-.|+-+|+++|+.-..+
T Consensus 558 fkn~a~~lq~~~wA~~~F~~L~~Lv~~~-~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 558 FKNPALPLQTAPWASQAFNALTSLVTSC-KNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred hcCccccccCCCchHHHHHHHHHHHHHh-ccceEeehhhhhhcCCCCc
Confidence 988776422111 12 357888888866 4788999999999876654
No 169
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=82.44 E-value=8.5 Score=36.31 Aligned_cols=130 Identities=7% Similarity=-0.091 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCcchhhhhh-cch----HHHHHH-hcCCHHHHHHHHhcCCC-----hhHHHHHHHHHHHhhcChhh
Q 010533 278 IQSLYDAIRVLLTPDDDQVVASQ-VYG----YARRFA-KIGIARALVHSLHAGLS-----SPSLISASIALKAVAVNDEI 346 (508)
Q Consensus 278 ~~~A~~aL~~L~~~dd~r~~~~~-a~~----~~~~i~-~~g~i~~Lv~lL~~~~d-----~~~~~~a~~aL~~La~~~e~ 346 (508)
...+|..|.||+..+.....+-+ ..+ ..+... +..++..|++++..+.+ ..-...++..|.|++..++-
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 34477888888876643221100 000 001111 22468888888877331 23456778889999999999
Q ss_pred HhHHhhcC-CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCC---cHHHHHHHH
Q 010533 347 CKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENG---GMDKLIVVS 408 (508)
Q Consensus 347 ~~~i~e~G-gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~G---gl~~Lv~lL 408 (508)
++.+.+.. +..++-+++.. .++.+..-..-++++|+|++-..+....+.... .+|.|+--|
T Consensus 92 R~~~l~~~~~~~~l~kLl~f-t~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPF-TEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHhCchhhhhHHHHHHHH-hccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 88888543 33233333331 222344566788999999998777666666533 345444444
No 170
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.54 E-value=12 Score=31.07 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=43.9
Q ss_pred CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME--AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~--~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
-.+++++..+. ..+..|+..||-+|.+++.-- +..++. ....+.|.+++.. .++.|+ .+|..|-++
T Consensus 27 ~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D--~d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFD--DQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSAD--PDENVR-SAAELLDRL 94 (97)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcC--CchhHH-HHHHHHHHH
Confidence 35788888888 678999999999999998522 233332 2345666666643 345665 555666554
No 171
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=80.84 E-value=68 Score=32.58 Aligned_cols=195 Identities=18% Similarity=0.117 Sum_probs=94.3
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCh----hHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCC
Q 010533 62 RTISQEAFDEVVKENMEDLGMEP----TEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDK 137 (508)
Q Consensus 62 ~~isQetfd~~v~eni~~~~m~p----~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~ 137 (508)
-.-+|+.|.+.+++.|+.+.=.- +.+++..+.-|..+= +...+. ....+.++.+...+...
T Consensus 34 e~~~~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~----------~~~~tL~~~~~k~lkkg--- 98 (309)
T PF05004_consen 34 EESSQEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVE----------DRRETLLDALLKSLKKG--- 98 (309)
T ss_pred cccchhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHH----------HHHHHHHHHHHHHhccC---
Confidence 34567777777777777765333 334443333332221 111000 11223444455544332
Q ss_pred CChhhHHHHHHHHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhh---cCCcchhHH
Q 010533 138 FSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV---HDVQSTETF 213 (508)
Q Consensus 138 ~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~---~~~~~~~~i 213 (508)
..++..-|++.+..+|-.= .+... ..+. ....|+|...+.... ........|+.+|+.++ .+..
T Consensus 99 ----~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~-~~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~----- 166 (309)
T PF05004_consen 99 ----KSEEQALAARALALLALTLGAGEDS-EEIF-EELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDE----- 166 (309)
T ss_pred ----CHHHHHHHHHHHHHHhhhcCCCccH-HHHH-HHHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCCh-----
Confidence 3356666777777776530 01111 1222 246888888887642 23344455565555432 2110
Q ss_pred HhcCChHHHHHHHh---------cC--------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH
Q 010533 214 RTGGGPKLLVNILI---------DG--------NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND 276 (508)
Q Consensus 214 ~~~ggi~~Lv~lL~---------~~--------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~ 276 (508)
..+..+++.|. .. .+++.+...|+.+-+-+.+.-+..+-.-.-...++.|+.+|.+.+.+
T Consensus 167 ---~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~ 243 (309)
T PF05004_consen 167 ---EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVD 243 (309)
T ss_pred ---hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 11121112221 11 12345666666555555444444221111124689999999987667
Q ss_pred HHHHHHHHHH
Q 010533 277 SIQSLYDAIR 286 (508)
Q Consensus 277 ~~~~A~~aL~ 286 (508)
++.+|..+|.
T Consensus 244 VRiAAGEaiA 253 (309)
T PF05004_consen 244 VRIAAGEAIA 253 (309)
T ss_pred HHHHHHHHHH
Confidence 7777655554
No 172
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.58 E-value=72 Score=32.06 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH
Q 010533 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (508)
Q Consensus 230 ~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~ 309 (508)
+.+..+++.|+++|+-.|.-+...-. ..++.+...+..+++++...|+.+++-+..--.....-.. ........
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~-~~~~~~~~ 111 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE-SDNDESVD 111 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch-hccCccch
Confidence 45789999999999999876653322 2366788888666556666777888766532111100000 00000011
Q ss_pred hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHH-HHHhhCC
Q 010533 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSL-LSKLAGS 388 (508)
Q Consensus 310 ~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~a-L~~La~~ 388 (508)
....++.+.+.|.+. +++++..++..++.|-....... ....+..|+-+.=+.....+..+ ++++.. +-..+.+
T Consensus 112 ~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~L-rQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 112 SKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRL-RQCLSVFFPVYASS 186 (298)
T ss_pred HhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHH-HHHHHHHHHHHHcC
Confidence 124567777777765 67788888888888765432222 01223333322222211223344 444444 5556655
Q ss_pred chhHHHHHhCCcHHHHHHHHhccCC--CHH-H--HHHHHHHHHHHh
Q 010533 389 DSNKSAIIENGGMDKLIVVSARFSD--DAS-V--LQEVMSIITVLS 429 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~--~~~-v--~e~a~~aL~~La 429 (508)
....+..+..+.+|.+-.+++.+.+ ++. . ..+....+..++
T Consensus 187 ~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt 232 (298)
T PF12719_consen 187 SPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLT 232 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHC
Confidence 4433445556788888888875443 221 1 235566666666
No 173
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.44 E-value=5.1 Score=38.95 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhCCc---HHHHHHHHhcc---CCCHHHHHHHHHHHHHHhcCChhhHHH-HHhcCcH
Q 010533 373 TVARICCSLLSKLAGSDSNKSAIIENGG---MDKLIVVSARF---SDDASVLQEVMSIITVLSLRSPENAAR-AMEAGSG 445 (508)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~Gg---l~~Lv~lL~~~---~~~~~v~e~a~~aL~~La~~~~~~~~~-i~~~G~i 445 (508)
.-++-++.+|..|+-.+.|.+.|...+- ++.|+..|.++ .+++..+|-|+..|.+||..+...+.. ..+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 3567889999999999999998888775 34444444433 356789999999999999988877644 4456789
Q ss_pred HHHHHHHHcC
Q 010533 446 DLAIQAMLKF 455 (508)
Q Consensus 446 ~~Lv~~L~~h 455 (508)
..|+..+..+
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 174
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.41 E-value=28 Score=40.62 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (508)
+.++.|...|++. |..+...+|.-++.++.+... .+++ -.|..+++++.-. +.. ..-..+|-+|+.||.-.-.
T Consensus 341 ~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp~--~Lad-~vi~svid~~~p~-e~~--~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 341 FVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLPP--ELAD-QVIGSVIDLFNPA-EDD--SAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHhccCC-cchhhHHHHHHHHHHHccCcH--HHHH-HHHHHHHHhcCcC-Cch--hHHHHHHHHHHHHHhcCCc
Confidence 5677777777653 566888999999999885442 1221 1345566655532 222 5666999999999842211
Q ss_pred HHHHHhCCcHHHHHHHHh------ccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533 392 KSAIIENGGMDKLIVVSA------RFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~lL~------~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~ 464 (508)
.-...+ ..+|.|+..|. +|+....|+..||-++++++..+. .-.+-++..=.-.+|..++ +..+-.+++.
T Consensus 414 lps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~Al--FDrevncRRA 490 (1133)
T KOG1943|consen 414 LPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVAL--FDREVNCRRA 490 (1133)
T ss_pred chHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHh--cCchhhHhHH
Confidence 111111 34566666663 355567899999999999985432 2223333322223344444 4345678899
Q ss_pred HHHHHHHhhhcCc
Q 010533 465 SCFMIRNLVARNP 477 (508)
Q Consensus 465 A~~aL~nL~~~~~ 477 (508)
|..|+-..+.|.+
T Consensus 491 AsAAlqE~VGR~~ 503 (1133)
T KOG1943|consen 491 ASAALQENVGRQG 503 (1133)
T ss_pred HHHHHHHHhccCC
Confidence 9999999887743
No 175
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.44 E-value=97 Score=35.66 Aligned_cols=227 Identities=9% Similarity=0.057 Sum_probs=125.5
Q ss_pred hHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhh
Q 010533 219 PKLLVNILID-GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 219 i~~Lv~lL~~-~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
++++-+.+.. +.+...++..|+..++.+..+- .-+..+...+++...++.|+..+.-+.-+|...+..||.
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------- 797 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------- 797 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-------
Confidence 3344444432 3445677888888888875432 344566778899999999988666566667776666762
Q ss_pred hhhcchHHHHHHhcCCHHHHHHHHhcCCC---hhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHH
Q 010533 298 ASQVYGYARRFAKIGIARALVHSLHAGLS---SPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKT 373 (508)
Q Consensus 298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d---~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~ 373 (508)
+.....+|.|.+--.+.++ ++-.-.+..++.+++. ..|.+..-.+ --+...+..++ +++..
T Consensus 798 ----------vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvr----epd~~ 862 (982)
T KOG4653|consen 798 ----------VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVR----EPDHE 862 (982)
T ss_pred ----------hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcC----CchHH
Confidence 1223456666663332221 1112223344444443 2233322221 01222333333 22335
Q ss_pred HHHHHHHHHHHhhC-Cc-hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---cCcHHHH
Q 010533 374 VARICCSLLSKLAG-SD-SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME---AGSGDLA 448 (508)
Q Consensus 374 v~~~al~aL~~La~-~~-~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~---~G~i~~L 448 (508)
....+|+.|++|+. .. ...+.+. ..+..++.+.+ -.+++.+++.|+-.|+.+-.+..+-.-.|.. ......+
T Consensus 863 ~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~-~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl 939 (982)
T KOG4653|consen 863 FRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLET-TDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETL 939 (982)
T ss_pred HHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHc-cCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 67788899988873 11 1222232 24556666665 3566889999999998886443333333322 2345566
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 449 IQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 449 v~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
...++.|++ ..++..||.+|-.+
T Consensus 940 ~~~vr~~~d-d~~klhaql~leei 962 (982)
T KOG4653|consen 940 LSYVRQHDD-DGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHhcCch-hHHHHHHHHHHHHH
Confidence 666777754 46677788877654
No 176
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=77.65 E-value=17 Score=33.53 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCc-HHHHH
Q 010533 327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG-MDKLI 405 (508)
Q Consensus 327 ~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Gg-l~~Lv 405 (508)
+.+..++..+++.|+.+-.+ +++ .-++.+...|.+. ++.|++.|+.+|..|...+-.|- .|- +..++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~---~ve-~~~~~l~~~L~D~----~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l 69 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN---LVE-PYLPNLYKCLRDE----DPLVRKTALLVLSHLILEDMIKV----KGQLFSRIL 69 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH---HHH-hHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHcCceee----hhhhhHHHH
Confidence 55777888888888875322 221 2357788888763 45899999999999986554432 133 36777
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533 406 VVSARFSDDASVLQEVMSIITVLSLR 431 (508)
Q Consensus 406 ~lL~~~~~~~~v~e~a~~aL~~La~~ 431 (508)
.++. -+++.|+..|...+..+...
T Consensus 70 ~~l~--D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLV--DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHc--CCCHHHHHHHHHHHHHHHHh
Confidence 7887 67899999999999999865
No 177
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.48 E-value=29 Score=31.51 Aligned_cols=149 Identities=15% Similarity=0.183 Sum_probs=77.1
Q ss_pred ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhh
Q 010533 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
.+..++..|.......++...+.-++..+- +..++.+.+ -.-..+-..+.....+-...++.++..|--.
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~------ 73 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPG------ 73 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCC------
Confidence 455666666542334556666666665552 445555432 1222333333332223344455555544311
Q ss_pred hhhcchHHHHHH-hcCCHHHHHHHHhcC-CChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHH-H
Q 010533 298 ASQVYGYARRFA-KIGIARALVHSLHAG-LSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKT-V 374 (508)
Q Consensus 298 ~~~a~~~~~~i~-~~g~i~~Lv~lL~~~-~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~-v 374 (508)
..+-+..+. ..|.++.++.++... .+......++.+|..=+. ++.|+..+-..|++.|.+++....+ .. +
T Consensus 74 ---~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~~~~~L~~~~~~~~~---~~~i 146 (157)
T PF11701_consen 74 ---PPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKNYVSWLKELYKNSKD---DSEI 146 (157)
T ss_dssp ---THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHHCHHHHHHHTTTCC----HH-C
T ss_pred ---CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHccccc---hHHH
Confidence 122333455 668888898888832 355566666666654444 4556655555678888888865322 13 4
Q ss_pred HHHHHHHHH
Q 010533 375 ARICCSLLS 383 (508)
Q Consensus 375 ~~~al~aL~ 383 (508)
...|+-.|.
T Consensus 147 r~~A~v~L~ 155 (157)
T PF11701_consen 147 RVLAAVGLC 155 (157)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555554443
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=77.38 E-value=1.5e+02 Score=35.57 Aligned_cols=271 Identities=8% Similarity=0.061 Sum_probs=130.5
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc----CC
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT----GN 250 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~----~~ 250 (508)
++.+.+.++.- ...+....|+..|..+...- ..+..-...+|.+|.++.. .+.+|+..|+.+|..+.. ..
T Consensus 424 vs~lts~IR~l--k~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 424 VSVLTSCIRAL--KTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHHhh--hcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhhccCCC
Confidence 55555555543 23445556777777665422 1344445678999999873 578899888887776542 22
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcCChHHHHHH------------------HHHHHHhcCCCcc-h--hhhhhcchHHHHHH
Q 010533 251 EVVKESYMELKIDELILEILSRQRNDSIQSL------------------YDAIRVLLTPDDD-Q--VVASQVYGYARRFA 309 (508)
Q Consensus 251 e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A------------------~~aL~~L~~~dd~-r--~~~~~a~~~~~~i~ 309 (508)
..+-..|.+. ..|.|-.++...+...++.| ...++.-...++. . .+-........++.
T Consensus 498 ~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 498 PSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred cccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 3333334432 45666666655332111111 1111111011111 0 00001111122222
Q ss_pred hcCCHHH-HHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCC----HHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533 310 KIGIARA-LVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG----IDALLRCIDDSGLQGNKTVARICCSLLSK 384 (508)
Q Consensus 310 ~~g~i~~-Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Gg----i~~Lv~lL~~~~~~~~~~v~~~al~aL~~ 384 (508)
+ .++. ++.+|.. +++-+.......|.-| |..+.+.+. +..|+..|.+ .++.+...-+.-|.-
T Consensus 577 ~--~V~~~v~sLlsd-~~~~Vkr~Lle~i~~L------C~FFGk~ksND~iLshLiTfLND----kDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 577 H--TVEQMVSSLLSD-SPPIVKRALLESIIPL------CVFFGKEKSNDVILSHLITFLND----KDWRLRGAFFDSIVG 643 (1431)
T ss_pred H--HHHHHHHHHHcC-CchHHHHHHHHHHHHH------HHHhhhcccccchHHHHHHHhcC----ccHHHHHHHHhhccc
Confidence 1 2333 3333332 3333444443434333 333444443 3444555543 234555544444444
Q ss_pred hhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHH
Q 010533 385 LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRS 464 (508)
Q Consensus 385 La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~ 464 (508)
++..- +++ -++.+-+|.|.+.|. -..+.|...|+.+|..|+.-.-=....+.+ .+..+.=+| -||+ .=+++.
T Consensus 644 vsi~V-G~r-s~seyllPLl~Q~lt--D~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL-~hPN-~WIR~~ 715 (1431)
T KOG1240|consen 644 VSIFV-GWR-SVSEYLLPLLQQGLT--DGEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLL-CHPN-LWIRRA 715 (1431)
T ss_pred eEEEE-eee-eHHHHHHHHHHHhcc--CcchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhhe-eCch-HHHHHH
Confidence 33211 111 135567899999998 567889999999999999522111111111 111121122 3875 456778
Q ss_pred HHHHHHHhh
Q 010533 465 SCFMIRNLV 473 (508)
Q Consensus 465 A~~aL~nL~ 473 (508)
+|..|....
T Consensus 716 ~~~iI~~~~ 724 (1431)
T KOG1240|consen 716 VLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHH
Confidence 888776543
No 179
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.04 E-value=1.8e+02 Score=34.72 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc---CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533 230 NEDPEILNSGFAVVAASATGNEVVKESYMEL---KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (508)
Q Consensus 230 ~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~---G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~ 306 (508)
+.+..+|..+.++|..++.. +.. +.++.. .+-..|.+.+++.....+...+.+|..|...- ..++..
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~--------~~e~~~ 734 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL--------SAEHCD 734 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc--------cHHHHH
Confidence 34678899999999888765 211 111111 12233444444434456666666666654211 112233
Q ss_pred HHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcC------CHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG------GIDALLRCIDDSGLQGNKTVARICCS 380 (508)
Q Consensus 307 ~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~G------gi~~Lv~lL~~~~~~~~~~v~~~al~ 380 (508)
.+.. .|+-++-.++.. +.....++..+|..++. .+...+.| .|...+..+....-.....+...-+-
T Consensus 735 ~i~k--~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Iv 807 (1176)
T KOG1248|consen 735 LIPK--LIPEVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIV 807 (1176)
T ss_pred HHHH--HHHHHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 3322 344444444443 45566677777766662 22222222 34444444443311110112111134
Q ss_pred HHHHhhCCchhHHHHHhCC----cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCC
Q 010533 381 LLSKLAGSDSNKSAIIENG----GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP 456 (508)
Q Consensus 381 aL~~La~~~~~k~~Iv~~G----gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~ 456 (508)
++..+... -..+++.+ -+..+...|. +.++.+.+.|++.+..++...|+-+-.-...-.++.+..+...|.
T Consensus 808 ai~~il~e---~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 808 AITHILQE---FKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK 882 (1176)
T ss_pred HHHHHHHH---HhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh
Confidence 44443311 11122222 3444455566 678999999999999999888876655444446777777775553
Q ss_pred CcHHHHHHHHHHHHHhhhc-CccchHHHHhc
Q 010533 457 NAQQLQRSSCFMIRNLVAR-NPENSFCSVMV 486 (508)
Q Consensus 457 ~~~~vq~~A~~aL~nL~~~-~~e~~~~~~~~ 486 (508)
..++.+.-..|--|+.+ ..+..+.|+.+
T Consensus 883 --~~~r~Kvr~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 883 --IKVRKKVRLLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred --HHHHHHHHHHHHHHHHHhCHHHHHhhCHH
Confidence 45555665666666543 45555555543
No 180
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.30 E-value=1.7e+02 Score=34.18 Aligned_cols=243 Identities=12% Similarity=0.082 Sum_probs=122.5
Q ss_pred CcHHHHHHHHhcccC-----CCHHHHHHHHHHHHHhhc---CCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010533 173 GGVELVCSICYKMRC-----GSKRVLDSCLKTMALLVH---DVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~-----~~~~~~~~al~aLa~l~~---~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (508)
|.++.+++.|.+... ++.....-|+..+++++. ....-...++.=.++.+.-.+. ++..-++..|||+++
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHH
Confidence 567777887763321 222333345666665542 2111112222222333333343 345678899999999
Q ss_pred HhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc
Q 010533 245 ASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA 323 (508)
Q Consensus 245 ~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~ 323 (508)
..|...-.+...+ ..+.......|.+.+. .+.-.|+-||..+..+++. ++++.+..+- +.++.|+.+.+.
T Consensus 488 ~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~------~~e~~~~hvp-~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ------ADEKVSAHVP-PIMQELLKLSNE 558 (1010)
T ss_pred HHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh------hhhhHhhhhh-HHHHHHHHHHHh
Confidence 9874333222322 2356667777775333 6777888899988876542 2233333331 345667777766
Q ss_pred CCChhHHHHHHHHH-HHh----hc-ChhhHhHHhhcCCHHHHHHHHhcc--CCCCcHHHHHHHHHHHHHhhC---CchhH
Q 010533 324 GLSSPSLISASIAL-KAV----AV-NDEICKSVAENGGIDALLRCIDDS--GLQGNKTVARICCSLLSKLAG---SDSNK 392 (508)
Q Consensus 324 ~~d~~~~~~a~~aL-~~L----a~-~~e~~~~i~e~Ggi~~Lv~lL~~~--~~~~~~~v~~~al~aL~~La~---~~~~k 392 (508)
.. .+.+..+...+ ... +- ..+.|+.++ ...++++... .+..+.+=.-.|.++|+.+.. +-++.
T Consensus 559 ~E-nd~Lt~vme~iV~~fseElsPfA~eL~q~La-----~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~ 632 (1010)
T KOG1991|consen 559 VE-NDDLTNVMEKIVCKFSEELSPFAVELCQNLA-----ETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH 632 (1010)
T ss_pred cc-hhHHHHHHHHHHHHHHHhhchhHHHHHHHHH-----HHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 53 22333333332 111 11 124444444 3456666631 111122333456666666541 22222
Q ss_pred H-HHHh--CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 393 S-AIIE--NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 393 ~-~Iv~--~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
. .+.+ .-.+|.+--+|+. .-..+-+.++..+..++.-.++
T Consensus 633 p~vl~~le~~~l~vi~~iL~~--~i~dfyeE~~ei~~~~t~~~~~ 675 (1010)
T KOG1991|consen 633 PEVLKQLEPIVLPVIGFILKN--DITDFYEELLEIVSSLTFLSKE 675 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhhhhhcc
Confidence 2 2222 2234555556663 3356778888888888765543
No 181
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.26 E-value=1.7e+02 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010533 263 DELILEILSRQRNDSIQSLYDAIRVLLT 290 (508)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 290 (508)
|..+..+|.+.++.+.-+|+.+|..|+.
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccC
Confidence 3455555655544555555555555553
No 182
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=70.69 E-value=1.2e+02 Score=30.18 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHHCCcHH-HHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010533 166 AAVATKNGGVE-LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (508)
Q Consensus 166 r~~i~~~Gavp-~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (508)
|..+++.+.++ -|+.+|.+.. ++..+...|+..|..|+.-- .+. ....+.+............
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~-~~~~l~~~~l~LLV~LT~P~----~~~-----------~~~~~~~~~~~~~~~~l~~ 96 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYK-DDDKLFLACLRLLVNLTWPI----ELL-----------VESQPKDKNQRRNIPELLK 96 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhcc-CchHHHHHHHHHHHHhCCCH----HHh-----------ccCCCCChHHHHHHHHHHH
Confidence 34444444444 3444454443 36788889999999887521 000 0101111111111111111
Q ss_pred HhhcCChhhHHHHHHcCcHHHHHHHHhc----C----Ch---HHHHHHHHHHHHhcCCCcchhhhh------hc-chHHH
Q 010533 245 ASATGNEVVKESYMELKIDELILEILSR----Q----RN---DSIQSLYDAIRVLLTPDDDQVVAS------QV-YGYAR 306 (508)
Q Consensus 245 ~l~~~~e~nr~~i~~~G~i~~Lv~lL~~----~----~~---~~~~~A~~aL~~L~~~dd~r~~~~------~a-~~~~~ 306 (508)
.+ -..|..|...+++..++..+.. . ++ .+++...-.++|+..-.++..... .. ..-.+
T Consensus 97 ~l----~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~ 172 (266)
T PF04821_consen 97 YL----QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIW 172 (266)
T ss_pred HH----HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHH
Confidence 11 2467777777777777766632 1 11 566667778889875533221110 01 12234
Q ss_pred HHHhcCCHHHHHHHHhc
Q 010533 307 RFAKIGIARALVHSLHA 323 (508)
Q Consensus 307 ~i~~~g~i~~Lv~lL~~ 323 (508)
.+.+.|....|+.+..+
T Consensus 173 ~l~~~~v~~lLL~l~s~ 189 (266)
T PF04821_consen 173 ALFESGVLDLLLTLASS 189 (266)
T ss_pred HHHHcCHHHHHHHHHhC
Confidence 44466777777776665
No 183
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=70.27 E-value=1.5e+02 Score=31.32 Aligned_cols=191 Identities=15% Similarity=0.134 Sum_probs=105.5
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHH-hcCC----hHHHHHHHHHHHHhcCCCc
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-SRQR----NDSIQSLYDAIRVLLTPDD 293 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL-~~~~----~~~~~~A~~aL~~L~~~dd 293 (508)
+..++.+... .++......++++++.+.-+....- ..+ ..+..+...+ .... ...++-..|....|....+
T Consensus 191 l~~l~~~~~~-~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 191 LQSLLNLALS-SEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 3445554443 2346666777777777765522111 111 1223333333 1111 1455556777777764333
Q ss_pred chhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhh-------------HhHHhhcCCHHHH
Q 010533 294 DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEI-------------CKSVAENGGIDAL 359 (508)
Q Consensus 294 ~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~-------------~~~i~e~Ggi~~L 359 (508)
.. .. ..+..|+++|.+ +++-..++.++.-|..+ ++. ++++.. -.+|.|
T Consensus 267 ~~---------~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L 328 (415)
T PF12460_consen 267 PL---------AT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKL 328 (415)
T ss_pred ch---------HH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHH
Confidence 21 11 235667777764 33445566666555554 332 344442 245667
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA 437 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~ 437 (508)
++..+...+ +.....+.+|..+-.+-.....+-+. .-+|.|++.|. .+++.++..++.+|..+...+++...
T Consensus 329 ~~~~~~~~~----~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~--~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 329 LEGFKEADD----EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS--LPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHhhcCh----hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 666665422 46677788888876532222222222 25799999997 77889999999999999876654433
No 184
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=69.30 E-value=16 Score=30.39 Aligned_cols=55 Identities=4% Similarity=0.087 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 418 LQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 418 ~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
+..++.+|+..+..-+......++. .+++++..+.. .+..|+..||.+|.|++..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D--~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDD--QDSRVRYYACEALYNISKV 57 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCC--CcHHHHHHHHHHHHHHHHH
Confidence 4567778887776555554444433 67888888854 5789999999999999853
No 185
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=69.09 E-value=7.5 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhc
Q 010533 263 DELILEILSRQRNDSIQSLYDAIRVLL 289 (508)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~ 289 (508)
+|.++++++..+.++..+|+.+|..++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 688999999887789999999998775
No 186
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=68.59 E-value=1.5e+02 Score=30.59 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=115.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh---hh---HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND---EI---CKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~---e~---~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
..+...+.+..|+..|... +-+...+++....++.... .. +..+... .-+.|.-++. +.+.+ ++.-.+-
T Consensus 70 ~Ei~~~dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~-gy~~~--dial~~g 144 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLR-GYENP--DIALNCG 144 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHH-GGGST--TTHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHH-HhcCc--cccchHH
Confidence 3455668888998888775 4567778887777776532 11 2233332 2233444444 33443 7888888
Q ss_pred HHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc---HHHHHHHHHcCC
Q 010533 380 SLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS---GDLAIQAMLKFP 456 (508)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~---i~~Lv~~L~~h~ 456 (508)
..|+.+...+.....|.....+..+.+.+. .++-.|.-.|..++..|-.+++......+.... ......+| .+
T Consensus 145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll--~s 220 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL--ES 220 (335)
T ss_dssp HHHHHHTTSHHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC--T-
T ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc--cC
Confidence 999999999888888999888899999988 778999999999999987789988888887765 34555556 34
Q ss_pred CcHHHHHHHHHHHHHhhh
Q 010533 457 NAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 457 ~~~~vq~~A~~aL~nL~~ 474 (508)
++-.+++++.-.|..+..
T Consensus 221 ~NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 221 SNYVTKRQSLKLLGELLL 238 (335)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCeEeehhhHHHHHHHHH
Confidence 678999999999999875
No 187
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.31 E-value=95 Score=34.96 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CC
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GS 388 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~ 388 (508)
.-+|.|+..|..+++|.+..++...|+.+++. +....... ..|.+-|.+ .+.+|++.|+-++..|- |.
T Consensus 933 ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t-----~yLyrrL~D----e~~~V~rtclmti~fLilagq 1003 (1128)
T COG5098 933 EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHT-----HYLYRRLGD----EDADVRRTCLMTIHFLILAGQ 1003 (1128)
T ss_pred HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHH-----HHHHHHhcc----hhhHHHHHHHHHHHHHHHccc
Confidence 35899999999998998989998888888762 32222222 344444443 24589999999999974 43
Q ss_pred chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
-.. .|-++.+..+|. ..+..+.+.|-..+..++..+..
T Consensus 1004 ~KV------KGqlg~ma~~L~--deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 1004 LKV------KGQLGKMALLLT--DEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred eee------ccchhhhHhhcc--CCcchHHHHHHHHHHHHHhcccc
Confidence 222 366778888888 67788888888888888865543
No 188
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=67.51 E-value=1.4e+02 Score=29.93 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=92.4
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh--h
Q 010533 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND--E 345 (508)
Q Consensus 268 ~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~--e 345 (508)
..+++++..+++.|...|+-.|.-|. .++. ..++.+...++.. +..+...++.++..+.... +
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~-------------~~a~-~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK-------------ELAK-EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh-------------HHHH-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCch
Confidence 56666666666667666665554442 2221 2366677777554 5667777888887766532 1
Q ss_pred hHhHHh-------hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHH-HHhcc-CCCHH
Q 010533 346 ICKSVA-------ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV-VSARF-SDDAS 416 (508)
Q Consensus 346 ~~~~i~-------e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~-lL~~~-~~~~~ 416 (508)
....-. ...-++.+.+.+.+ .+.+++..++..+..|-.++-... ....+..|+- ..... .+++.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~ 171 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDS----ENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQR 171 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHH
Confidence 111111 11223445555554 245899999999999753322221 0112222222 22211 23456
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCC
Q 010533 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFP 456 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~ 456 (508)
++..-...+-..|..+++|+. .+..+.++.+..+++.+.
T Consensus 172 LrQ~L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 172 LRQCLSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 766666677778877777754 445667788777776544
No 189
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.91 E-value=48 Score=37.21 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=73.0
Q ss_pred cCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 010533 366 SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG 445 (508)
Q Consensus 366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i 445 (508)
+.+..++.|.-.+|.+|+.|.++....+..+-.+-...+..=+. ...|.|+.+|+-+|+.+= ++|..- +..+.
T Consensus 93 g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLsrlQ-~d~~de----e~~v~ 165 (892)
T KOG2025|consen 93 GTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALSRLQ-GDPKDE----ECPVV 165 (892)
T ss_pred cccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHh-cCCCCC----cccHH
Confidence 34555678999999999999875444433333344444444333 346889999999999986 232110 12345
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccccccHHH
Q 010533 446 DLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQ 494 (508)
Q Consensus 446 ~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~~~ 494 (508)
..++.+++..| ++.|++.| |.|+.. ++.-..++++.-+-+.-+-
T Consensus 166 n~l~~liqnDp-S~EVRRaa---LsnI~v-dnsTlp~IveRarDV~~an 209 (892)
T KOG2025|consen 166 NLLKDLIQNDP-SDEVRRAA---LSNISV-DNSTLPCIVERARDVSGAN 209 (892)
T ss_pred HHHHHHHhcCC-cHHHHHHH---HHhhcc-CcccchhHHHHhhhhhHHH
Confidence 67777787665 46787766 555543 4556677777655444333
No 190
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.44 E-value=2.3e+02 Score=32.08 Aligned_cols=105 Identities=11% Similarity=0.139 Sum_probs=66.2
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHH
Q 010533 178 VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESY 257 (508)
Q Consensus 178 Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i 257 (508)
+-.+|+....++..+...++..|+.+++....+++.+-.+-...+..=|. ..++.|..+|..+|..+= +++.+-
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLsrlQ-~d~~de--- 160 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALSRLQ-GDPKDE--- 160 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHh-cCCCCC---
Confidence 33455555557889999999999998885433444444444444433332 236788889999998873 122110
Q ss_pred HHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCC
Q 010533 258 MELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPD 292 (508)
Q Consensus 258 ~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~d 292 (508)
+..+...+..++++.+. ++.+.| |.+++.+.
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdn 192 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDN 192 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCc
Confidence 23466788888887654 666643 77787654
No 191
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=66.09 E-value=2.2e+02 Score=31.57 Aligned_cols=64 Identities=8% Similarity=0.162 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHH
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCS 483 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~ 483 (508)
.+.-|+..|+.+|.-.++.-.+. +.-..+...|-+++.. .+..|+..|..+|+||- +.+.+..+
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD--~DdeVRdrAsf~l~~~~--~~da~~pl 562 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLND--QDDEVRDRASFLLRNMR--LSDACEPL 562 (898)
T ss_pred hhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhc--ccHHHHHHHHHHHHhhh--hhhhhhcc
Confidence 35678888999998777532211 1111223445555643 45678899999999984 33444443
No 192
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=65.86 E-value=1e+02 Score=30.13 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-C-CHHHHHHHHhcCC---ChhHHHHH
Q 010533 263 DELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-G-IARALVHSLHAGL---SSPSLISA 333 (508)
Q Consensus 263 i~~Lv~lL~~~~----~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g-~i~~Lv~lL~~~~---d~~~~~~a 333 (508)
...+..++.... ...+.-+++++.|+-.....+. .+.+. + .+...+..+.... +..++..+
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ 177 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ----------LLLSHFDSSILELLSSLLSSLLDSNKNVRIAL 177 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH----------HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH----------HHHhcccchHHHHHHHHhhccccccHHHHHHH
Confidence 455555555442 2445558888999876554432 22221 2 2222222222221 45677778
Q ss_pred HHHHHHhhcChhhHhHHhhcC---CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhc
Q 010533 334 SIALKAVAVNDEICKSVAENG---GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR 410 (508)
Q Consensus 334 ~~aL~~La~~~e~~~~i~e~G---gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~ 410 (508)
+..+.|++..--.... -+.. .+..+++.+.. ...+.++.-.++-+|++|...+.......+.=++...+.....
T Consensus 178 ATl~~Nlsv~~~~~~~-~~~~~~~ll~~i~~~~~~--~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (268)
T PF08324_consen 178 ATLLLNLSVLLHKNRS-DEEWQSELLSSIIEVLSR--EESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKAN 254 (268)
T ss_dssp HHHHHHHHHHHHHCTS--CCHHHHHHHHHHHHCHC--CHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcc--ccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHh
Confidence 8888888763111110 1111 13344443322 1234689999999999998777666666654345555454444
Q ss_pred cCCCHHHHHHH
Q 010533 411 FSDDASVLQEV 421 (508)
Q Consensus 411 ~~~~~~v~e~a 421 (508)
....+.+++.+
T Consensus 255 ~~~e~ri~~v~ 265 (268)
T PF08324_consen 255 KSKEPRIKEVA 265 (268)
T ss_dssp HTTSHHHHHHH
T ss_pred cccchHHHHHh
Confidence 56667776644
No 193
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.90 E-value=6.2 Score=40.37 Aligned_cols=66 Identities=17% Similarity=0.048 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 420 ~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
+....|++||..++++...+.+.||+++++.--.-...+|-+.+....++|+|...|-++.+++-.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 467799999999999999999999999987654334457788888999999999999988877754
No 194
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.35 E-value=2.9e+02 Score=32.42 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=69.1
Q ss_pred cCChHHHHHHHhcC------CCCHHHHHHHHHHHHHhhc---CChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 010533 216 GGGPKLLVNILIDG------NEDPEILNSGFAVVAASAT---GNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIR 286 (508)
Q Consensus 216 ~ggi~~Lv~lL~~~------~~~~~v~~~a~~~L~~l~~---~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~ 286 (508)
.+.++.++.+|.++ ..+..-..-|+++++++|. +....|. .++.=.+..+...++++..-.+.-|||++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 34567777777733 2345666778888888763 2222222 223223344444445544345556999999
Q ss_pred HhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh
Q 010533 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346 (508)
Q Consensus 287 ~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~ 346 (508)
..+.-|=.- .. .+ ..+++...+.|.+..+-.+..+++.||..+-.+.+.
T Consensus 488 ~~~~~df~d------~~---~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 488 QFSSIDFKD------PN---NL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHhccCCC------hH---HH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 998433100 00 11 135677778887544545888999999888776543
No 195
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=63.96 E-value=1.4e+02 Score=28.80 Aligned_cols=139 Identities=13% Similarity=0.065 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-Cchh
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSN 391 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~ 391 (508)
++.|+.-+....+++.+.....+|..++..+ .+...++ ..|..+.... ..+..--+...+..+-. ++..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~-----~~L~~L~~~~----~~~~~~~~~rLl~~lw~~~~r~ 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPVL-----QTLVSLVEQG----SLELRYVALRLLTLLWKANDRH 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHHH-----HHHHHHHcCC----chhHHHHHHHHHHHHHHhCchH
Confidence 4556665666667888899999999999876 4333332 3444444332 11333344455555532 2211
Q ss_pred HHHHHhCCcHHHHHHH--Hh------ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHH
Q 010533 392 KSAIIENGGMDKLIVV--SA------RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR 463 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~l--L~------~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~ 463 (508)
- +.+..++.. ++ .........-....+++.+|...|++... .+..|..++. +.+++.++.
T Consensus 73 f------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~-----ll~~ls~~L~-~~~~~~~~a 140 (234)
T PF12530_consen 73 F------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVD-----LLPLLSGCLN-QSCDEVAQA 140 (234)
T ss_pred H------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHH-----HHHHHHHHHh-ccccHHHHH
Confidence 1 334333333 11 01112234444456888888888873333 3566777774 345566777
Q ss_pred HHHHHHHHhh
Q 010533 464 SSCFMIRNLV 473 (508)
Q Consensus 464 ~A~~aL~nL~ 473 (508)
-|..+|+.++
T Consensus 141 lale~l~~Lc 150 (234)
T PF12530_consen 141 LALEALAPLC 150 (234)
T ss_pred HHHHHHHHHH
Confidence 7777888776
No 196
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=63.17 E-value=2.4e+02 Score=31.08 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred CCHHHHHHHHhcCCChh-HHHHHHHHHHHhh-c-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-
Q 010533 312 GIARALVHSLHAGLSSP-SLISASIALKAVA-V-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG- 387 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~-~~~~a~~aL~~La-~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~- 387 (508)
.++..+.+.+.++.-+. ....+...+.... . +.+ .++.+..++.......+..+...|+-+++.|..
T Consensus 357 ~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 357 PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 36777778887764221 1222222222222 2 222 244566666643222344677777777777652
Q ss_pred ---CchhH-HHHHhCCcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH-cCCCcHH
Q 010533 388 ---SDSNK-SAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML-KFPNAQQ 460 (508)
Q Consensus 388 ---~~~~k-~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~-~h~~~~~ 460 (508)
+.+.. ..++ ...++.|.+.|... ..+...+.-.+.+|.|+.. |. .++.+...+. .......
T Consensus 428 ~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~~---------~i~~l~~~l~~~~~~~~~ 495 (574)
T smart00638 428 YCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--PS---------SIKVLEPYLEGAEPLSTF 495 (574)
T ss_pred HhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--hh---------HHHHHHHhcCCCCCCCHH
Confidence 22111 2222 23556666655421 1233334455666666643 32 2233333443 3334567
Q ss_pred HHHHHHHHHHHhhhcCccchHH
Q 010533 461 LQRSSCFMIRNLVARNPENSFC 482 (508)
Q Consensus 461 vq~~A~~aL~nL~~~~~e~~~~ 482 (508)
++..|.|||+.++...|+....
T Consensus 496 iR~~Av~Alr~~a~~~p~~v~~ 517 (574)
T smart00638 496 IRLAAILALRNLAKRDPRKVQE 517 (574)
T ss_pred HHHHHHHHHHHHHHhCchHHHH
Confidence 8889999999998655555443
No 197
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=63.08 E-value=35 Score=38.81 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHH
Q 010533 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (508)
Q Consensus 188 ~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv 267 (508)
+++.++..|+.+++.+-.. + +-...++++.++|. ..++.|...|+-+|..+= .-.+..+.+.|.+..+.
T Consensus 104 ~N~~iR~~AlR~ls~l~~~-----e-l~~~~~~~ik~~l~--d~~ayVRk~Aalav~kly---~ld~~l~~~~g~~~~l~ 172 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK-----E-LLGNIIDPIKKLLT--DPHAYVRKTAALAVAKLY---RLDKDLYHELGLIDILK 172 (757)
T ss_pred CCHHHHHHHHHHHHhcChH-----H-HHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHHH---hcCHhhhhcccHHHHHH
Confidence 5788898888888865321 1 22235667777776 457899999999998873 23456777889999998
Q ss_pred HHHhcCChHHHHHHHHHHHHhcC
Q 010533 268 EILSRQRNDSIQSLYDAIRVLLT 290 (508)
Q Consensus 268 ~lL~~~~~~~~~~A~~aL~~L~~ 290 (508)
.++...++.++++|..+|..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 88887777899999888887753
No 198
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=60.37 E-value=1.8e+02 Score=28.67 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHhcccCCCH----HHHHHH-HHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533 172 NGGVELVCSICYKMRCGSK----RVLDSC-LKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (508)
Q Consensus 172 ~Gavp~Lv~lL~~~~~~~~----~~~~~a-l~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l 246 (508)
.-++|.|+++++..+..-. +....- -..++++ -.|-++.|-+++....-+.-++..++.+|..+
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv-----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l 140 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV-----------GDGDIEPLKELIEDPDADEYVRMAAISALAFL 140 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH-----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3479999999976421000 111111 1112222 24557888888887666777888999999998
Q ss_pred hcCChhhHHHHHH
Q 010533 247 ATGNEVVKESYME 259 (508)
Q Consensus 247 ~~~~e~nr~~i~~ 259 (508)
+..++.-|+.+++
T Consensus 141 ~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 141 VHEGPISREEVIQ 153 (249)
T ss_pred HHcCCCCHHHHHH
Confidence 8888888887764
No 199
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=60.31 E-value=16 Score=24.49 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHhh
Q 010533 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSL 97 (508)
Q Consensus 63 ~isQetfd~~v~eni~~~~m~p~eal~~aI~q~~~ 97 (508)
+++.+.+ +.+++-....+++.++.++.+|.+|-.
T Consensus 5 ~l~~~~~-~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 5 RLPDELY-ERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EEEHHHH-HHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred EeCHHHH-HHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4677777 788889999999999999999999854
No 200
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.08 E-value=96 Score=34.25 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=74.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh--cCChhhHHHHHhcC
Q 010533 366 SGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS--LRSPENAARAMEAG 443 (508)
Q Consensus 366 ~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La--~~~~~~~~~i~~~G 443 (508)
+.+.+++.|...+|..|+.++.+-.--+..+-.|-++.|.+-+- ...+.|+.+|+-+|+-+- ..|++|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~~~neen~~------ 170 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEMELNEENRI------ 170 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhccCChHHHH------
Confidence 44555678999999999999865433334444465666655443 346789999999998764 23555432
Q ss_pred cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccccccHHHHh
Q 010533 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRR 496 (508)
Q Consensus 444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~~~~~ 496 (508)
...++.+++..|+ ..|++.| +.|+.. ++.-..++++..+-+.-+-||
T Consensus 171 -~n~l~~~vqnDPS-~EVRr~a---llni~v-dnsT~p~IlERarDv~~anRr 217 (885)
T COG5218 171 -VNLLKDIVQNDPS-DEVRRLA---LLNISV-DNSTYPCILERARDVSGANRR 217 (885)
T ss_pred -HHHHHHHHhcCcH-HHHHHHH---HHHeee-CCCcchhHHHHhhhhhHHHHH
Confidence 3466677776654 5666654 566644 455677888776655544443
No 201
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=58.29 E-value=1.3e+02 Score=27.34 Aligned_cols=119 Identities=13% Similarity=0.101 Sum_probs=76.4
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCc--HHHHHHHHhccCCCHHHHHHHHHHHHHHh---cC
Q 010533 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGG--MDKLIVVSARFSDDASVLQEVMSIITVLS---LR 431 (508)
Q Consensus 357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Gg--l~~Lv~lL~~~~~~~~v~e~a~~aL~~La---~~ 431 (508)
..+..+|++.. ++-...++.+++.+..... .+.+.+.|+ +..|+..|++ .+.+.+.+.+|.+|..|. .+
T Consensus 28 ~ri~~LL~s~~----~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 28 TRINSLLQSKS----AYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHhCCCC----hhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 34667776532 2566677777877653211 455555554 6889999986 456788999999998875 35
Q ss_pred ChhhHHHHHhcC---cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh
Q 010533 432 SPENAARAMEAG---SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 432 ~~~~~~~i~~~G---~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
.|+..+++.--. .+..++++++. ..+...+..+|..+..++|...+.+..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~~ 154 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFAN 154 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchHH
Confidence 567666665433 23444444432 345567888999988877766655543
No 202
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.89 E-value=1.1e+02 Score=36.53 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=91.4
Q ss_pred CHHHHHHHHhcCC---ChhHHHHHHHHHHHhh-cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC
Q 010533 313 IARALVHSLHAGL---SSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS 388 (508)
Q Consensus 313 ~i~~Lv~lL~~~~---d~~~~~~a~~aL~~La-~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~ 388 (508)
..|.++.+.+... +++++..|..||+.+. .+.++|.. .++.|+..|..++ ++-|..++..+++-|+-.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp---~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSP---SPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCC---Cceeeecchheccchhhh
Confidence 4677888887643 6889999999998865 47888874 4689999999753 347888888888888732
Q ss_pred -chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHH
Q 010533 389 -DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSC 466 (508)
Q Consensus 389 -~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~ 466 (508)
+..-+ -.-+.|.+-|. -.++.|++.|..+|++|-+.+ .|--.|.+.-+..++.. .++.+..-|-
T Consensus 992 fpnlie-----~~T~~Ly~rL~--D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D--~~~~IsdlAk 1056 (1251)
T KOG0414|consen 992 FPNLIE-----PWTEHLYRRLR--DESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLED--PNAEISDLAK 1056 (1251)
T ss_pred cccccc-----hhhHHHHHHhc--CccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcC--CcHHHHHHHH
Confidence 21111 12345555555 567999999999999998743 23336888888888854 3455443333
No 203
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=57.54 E-value=88 Score=34.78 Aligned_cols=99 Identities=8% Similarity=0.135 Sum_probs=57.2
Q ss_pred CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhcCCh
Q 010533 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSLRSP 433 (508)
Q Consensus 355 gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~-~~~~~v~e~a~~aL~~La~~~~ 433 (508)
-++.+...+....+..+.+-...++.+|+|+.. + ..++.|...+... .....++-.|+++|..++...|
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 356666666632222233566677888888632 1 3566777766532 2356788899999998876666
Q ss_pred hhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533 434 ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471 (508)
Q Consensus 434 ~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n 471 (508)
+... +.++.+......+.+++-.|..+|-.
T Consensus 557 ~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 557 EKVR--------EILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 4433 44566666666666776666555544
No 204
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=57.53 E-value=66 Score=28.23 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 370 GNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+++.++-.|+.+|..+..| +.....|...+.+..|+.++..+...+.|++.++..+..-+.
T Consensus 49 ~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 49 KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3568999999999999865 456778888899999999998665555699998888887653
No 205
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=57.48 E-value=2.1e+02 Score=28.52 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=93.6
Q ss_pred hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCc-
Q 010533 215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD- 293 (508)
Q Consensus 215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd- 293 (508)
+...++.++..|...+..+-|...+..+|+.+. .+. ..+.+-+..+.+...+....-.|+..+--.+.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 345789999999877778888888888888763 222 22333333322222333333344554432111
Q ss_pred ----chhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHH-HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCC
Q 010533 294 ----DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL-ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGL 368 (508)
Q Consensus 294 ----~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~-~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~ 368 (508)
+..++.+.+.-.. +..+-+.-|-..|.+.+.+... ..+..+| .+.||=..+..+.....+
T Consensus 134 ~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~L-------------Rn~g~EeaI~al~~~l~~ 198 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYL-------------RNIGTEEAINALIDGLAD 198 (289)
T ss_pred ccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHh-------------hccCcHHHHHHHHHhccc
Confidence 1112211111111 0111122232223222111111 1222222 234554444433333222
Q ss_pred CCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 369 QGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 369 ~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+++-.+.++..+|+.|-+ --+||.|.+.|..-..++-|+-.|+-+|..++
T Consensus 199 -~SalfrhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 199 -DSALFRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred -chHHHHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 256778888999988743 24688999988876778899999999999998
No 206
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=57.33 E-value=1.3e+02 Score=29.56 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=42.0
Q ss_pred hCCcHHHHHHHHhccCCCH-------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHH
Q 010533 397 ENGGMDKLIVVSARFSDDA-------SVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMI 469 (508)
Q Consensus 397 ~~Ggl~~Lv~lL~~~~~~~-------~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL 469 (508)
+.-+.|+|++++++ +++. .+-+.--.+|+.++-++. +.|.+++....-+.-++..|+.||
T Consensus 71 e~~A~~~li~l~~~-~~~~~~~l~GD~~tE~l~~ilasv~~G~~------------~~L~~li~~~~~~~yvR~aa~~aL 137 (249)
T PF06685_consen 71 EERALPPLIRLFSQ-DDDFLEDLFGDFITEDLPRILASVGDGDI------------EPLKELIEDPDADEYVRMAAISAL 137 (249)
T ss_pred hhhhHHHHHHHHcC-CcchHHHHHcchhHhHHHHHHHHHhCCCH------------HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 45678888888863 2211 234445555666654444 444444443333333455566666
Q ss_pred HHhhhcCccchHHHHhc
Q 010533 470 RNLVARNPENSFCSVMV 486 (508)
Q Consensus 470 ~nL~~~~~e~~~~~~~~ 486 (508)
..++...|..|..+++.
T Consensus 138 ~~l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 138 AFLVHEGPISREEVIQY 154 (249)
T ss_pred HHHHHcCCCCHHHHHHH
Confidence 66666666666655543
No 207
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=57.21 E-value=3.9e+02 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC-ccchHHHHhc
Q 010533 445 GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN-PENSFCSVMV 486 (508)
Q Consensus 445 i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~-~e~~~~~~~~ 486 (508)
-..+++++.. .+++|+..|+.||.+++.+| +...+-++++
T Consensus 859 ~~~iieaf~s--p~edvksAAs~ALGsl~vgnl~~yLpfil~q 899 (1233)
T KOG1824|consen 859 KDTIIEAFNS--PSEDVKSAASYALGSLAVGNLPKYLPFILEQ 899 (1233)
T ss_pred HHHHHHHcCC--ChHHHHHHHHHHhhhhhcCchHhHHHHHHHH
Confidence 3566777743 35789999999999999864 5555555543
No 208
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=53.47 E-value=16 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=18.4
Q ss_pred HHHHHhhcCCChhHHHHHHHHH
Q 010533 73 VKENMEDLGMEPTEALQDAIQT 94 (508)
Q Consensus 73 v~eni~~~~m~p~eal~~aI~q 94 (508)
+-.-+.++.|+||||++.++.|
T Consensus 24 Iya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 24 IYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc
Confidence 3346788999999999999976
No 209
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=53.21 E-value=73 Score=30.88 Aligned_cols=82 Identities=12% Similarity=0.226 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCC---h-HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHH
Q 010533 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR---N-DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (508)
Q Consensus 235 v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~---~-~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~ 309 (508)
-...++..|.-++ .|++.|..|+++..--.|...|...+ + +.++ .+.+++..|..+|+.-+ .+.+.
T Consensus 116 RvcnaL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~v--------i~fLl 186 (315)
T COG5209 116 RVCNALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYV--------IKFLL 186 (315)
T ss_pred HHHHHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHH--------HHHHH
Confidence 3456666666664 57788988988876555555555322 2 4433 47788889988876432 23344
Q ss_pred hcCCHHHHHHHHhcCC
Q 010533 310 KIGIARALVHSLHAGL 325 (508)
Q Consensus 310 ~~g~i~~Lv~lL~~~~ 325 (508)
....+|.++.++..++
T Consensus 187 tTeivPLcLrIme~gS 202 (315)
T COG5209 187 TTEIVPLCLRIMELGS 202 (315)
T ss_pred hhhHHHHHHHHHHhhh
Confidence 6688999999998875
No 210
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.93 E-value=1.2e+02 Score=36.16 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=93.0
Q ss_pred cHHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHH
Q 010533 262 IDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIAL 337 (508)
Q Consensus 262 ~i~~Lv~lL~~~~----~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL 337 (508)
..|.+++..+++. ++.+.+|.-+|..|.--+ . .+- ...+|.|+..|..++++.+..++..++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a----------~fc-es~l~llftimeksp~p~IRsN~Vval 985 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---A----------EFC-ESHLPLLFTIMEKSPSPRIRSNLVVAL 985 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---H----------HHH-HHHHHHHHHHHhcCCCceeeecchhec
Confidence 5677777776542 267777777776654222 1 121 135899999999888888889999999
Q ss_pred HHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHH
Q 010533 338 KAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDAS 416 (508)
Q Consensus 338 ~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~ 416 (508)
+.|++. +....... +.|..-|.+ ++..|++.|+-+|..|-.++-.| -.|-+.-+..+|. .+++.
T Consensus 986 gDlav~fpnlie~~T-----~~Ly~rL~D----~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~--D~~~~ 1050 (1251)
T KOG0414|consen 986 GDLAVRFPNLIEPWT-----EHLYRRLRD----ESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLE--DPNAE 1050 (1251)
T ss_pred cchhhhcccccchhh-----HHHHHHhcC----ccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhc--CCcHH
Confidence 999884 22222222 345555554 24699999999999998766544 3477888888887 56777
Q ss_pred HHHHHHHHHHHHh
Q 010533 417 VLQEVMSIITVLS 429 (508)
Q Consensus 417 v~e~a~~aL~~La 429 (508)
|..-|=...-.|+
T Consensus 1051 IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELS 1063 (1251)
T ss_pred HHHHHHHHHHHhh
Confidence 7766664444444
No 211
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=52.16 E-value=3.9e+02 Score=30.09 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533 190 KRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (508)
Q Consensus 190 ~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~ 268 (508)
.++..-|+..|..+......-..+.+ ..|-..+-.++.....++..+-.++++|.|+- .|...++.++.. ...++.
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f-~~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLF-SNPAGRELFMSR--LESILD 634 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhc-cCHHHHHHHHHH--HHHHhh
Confidence 45566667766655543322223332 33444444444333356778888999999985 458888887754 222222
Q ss_pred HH---hcCCh-HHHHHHHHHHHHhcC--CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC----ChhHHHHHHHHHH
Q 010533 269 IL---SRQRN-DSIQSLYDAIRVLLT--PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL----SSPSLISASIALK 338 (508)
Q Consensus 269 lL---~~~~~-~~~~~A~~aL~~L~~--~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~----d~~~~~~a~~aL~ 338 (508)
.+ .+.++ .++.+.+....|++. ..+ -.+.|+.+.|..++.... |-+....+..||+
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~--------------~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQD--------------NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhc--------------ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 22 22222 344433323333331 110 012466666666665533 2244566777899
Q ss_pred HhhcChhhHhHHhhcCCHHHHHHHHhccCC
Q 010533 339 AVAVNDEICKSVAENGGIDALLRCIDDSGL 368 (508)
Q Consensus 339 ~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~ 368 (508)
+|+..+....++...-.+..+.+-+++..+
T Consensus 701 tL~t~~~~~~~~A~~~~v~sia~~~~~~~~ 730 (745)
T KOG0301|consen 701 TLMTVDASVIQLAKNRSVDSIAKKLKEAVS 730 (745)
T ss_pred hhccccHHHHHHHHhcCHHHHHHHHHHhcc
Confidence 999988888888887788888888876543
No 212
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=52.01 E-value=60 Score=30.67 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=46.7
Q ss_pred HHhhcCCHHHHHHHHhccCCCC--------------cHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhc-cC
Q 010533 349 SVAENGGIDALLRCIDDSGLQG--------------NKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSAR-FS 412 (508)
Q Consensus 349 ~i~e~Ggi~~Lv~lL~~~~~~~--------------~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~-~~ 412 (508)
-+.+.|++..++++|....+.. -.++...|+..|+.++ ++.+|+..+.+. ++.++..+.. +.
T Consensus 38 llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~ 115 (207)
T PF01365_consen 38 LLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQI 115 (207)
T ss_dssp HHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhc
Confidence 4556778888888887543321 1478899999999997 577888888753 4444443331 21
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcH
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQ 459 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~ 459 (508)
... -.+..+|..+-.+|++.+..+.+.- +..++.++..|..++
T Consensus 116 ~~~---~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr~~ 158 (207)
T PF01365_consen 116 GYG---LGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGRQP 158 (207)
T ss_dssp -TT---HHHHHHHHHHHTT----------------------------
T ss_pred cCC---chHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCCCh
Confidence 111 2456677777778888888887665 888889888764433
No 213
>PRK09169 hypothetical protein; Validated
Probab=51.86 E-value=6.6e+02 Score=32.65 Aligned_cols=144 Identities=13% Similarity=0.102 Sum_probs=71.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHH-hhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSK-LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~-La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
+.-+++.|..-++. +..+.+...|.. |+...+...+ .+.-++.-.+..|.++..++..++.+......|.. ..
T Consensus 711 lAn~LnAlsKwp~~---~acr~A~~~LA~rL~~~~~l~~a-~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~--~~ 784 (2316)
T PRK09169 711 VANALNALSKWPEE---EACRAAAEALAGRLAADADLRQA-MNPQGLANSLNALSKWPQEPACQQAALLLAERLGS--AG 784 (2316)
T ss_pred HHHHHHHHHhccCc---cHHHHHHHHHHHHHhcChHHHhh-cCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--CC
Confidence 44455555544332 223333333322 3333444444 34455667777777777666655544444444432 12
Q ss_pred hHHHHHhcCcHHHHHHHHHcC------CCcHHHHHHHHHHHHHhhhcCccchHHHHhccccccHHHHhhhhhcccCC
Q 010533 435 NAARAMEAGSGDLAIQAMLKF------PNAQQLQRSSCFMIRNLVARNPENSFCSVMVSRNLSDRQRRTTKSARMQP 505 (508)
Q Consensus 435 ~~~~i~~~G~i~~Lv~~L~~h------~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~~~~~~~~~~~~~~~~~~ 505 (508)
.-..-.+.+++..+.+.|.+. .++..-..-+-..|+.|+.+=.-....|-..+..-..-=++...++||.+
T Consensus 785 ~p~~~f~~~~laq~aNa~aR~~~~~~~~~~~~~~~~~~~~L~~LA~hL~~~~~~~~~a~~~~i~~ifKalas~~l~d 861 (2316)
T PRK09169 785 LPFRTFTMAGLAQLANAMARLILKLEDQDDEEDLALARARLRELAAHLDLRPERLEQADARDIAVLFKALASARLKD 861 (2316)
T ss_pred CchhhcCHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHhccCchhhhhccchhHHHHHHHHHhccchh
Confidence 222222233333444443322 22222223344568888876555556666666555555677778888764
No 214
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.60 E-value=17 Score=37.26 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=52.9
Q ss_pred HHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 010533 377 ICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME 441 (508)
Q Consensus 377 ~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~ 441 (508)
.....|++|+. ++++.+.|.+.||++.+++--.-...+|-+++...-++.+|..+|.+|++-|..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 35678899875 899999999999999998744322356999999999999999988888876643
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.14 E-value=1.8e+02 Score=33.12 Aligned_cols=128 Identities=20% Similarity=0.156 Sum_probs=71.1
Q ss_pred HHHHHhcCCCcchhhhhhcchHHHHHHh---cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHH
Q 010533 283 DAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDA 358 (508)
Q Consensus 283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~---~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~ 358 (508)
..+..|+.++|+-.-.++.+..+-..+- .++|..|+..--+..+.++...+..+|+-++. +++.|. .
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~---------s 592 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP---------S 592 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhch---------H
Confidence 3344555555543333433333333332 23556665553333345677778788876555 445444 4
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 359 LLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
.+.+|..+. |+.|+-.+.-+|+--+....++.+| .|++-|.. ....-|++.||-+++.+..
T Consensus 593 ~V~lLses~---N~HVRyGaA~ALGIaCAGtG~~eAi-------~lLepl~~-D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 593 TVSLLSESY---NPHVRYGAAMALGIACAGTGLKEAI-------NLLEPLTS-DPVDFVRQGALIALAMIMI 653 (929)
T ss_pred HHHHHhhhc---ChhhhhhHHHHHhhhhcCCCcHHHH-------HHHhhhhc-ChHHHHHHHHHHHHHHHHH
Confidence 556777542 4478888888888765555555544 23333331 2234588888888887654
No 216
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=50.50 E-value=3.4e+02 Score=28.86 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCC-----hHHHHHHHHHHHHhcCCC-cchhhhhhcchHH
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-----NDSIQSLYDAIRVLLTPD-DDQVVASQVYGYA 305 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~-----~~~~~~A~~aL~~L~~~d-d~r~~~~~a~~~~ 305 (508)
+..+...++++|.|+...+...++.+.+......+++.+.... ..+.-.-.+.|+-|+.-. +. ..
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~---------Rs 180 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDH---------RS 180 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHH---------HH
Confidence 4578889999999998888888999988877776666664321 122222334455444221 22 23
Q ss_pred HHHHhcCCHHHHHHHHhc
Q 010533 306 RRFAKIGIARALVHSLHA 323 (508)
Q Consensus 306 ~~i~~~g~i~~Lv~lL~~ 323 (508)
+.+++.+|++.+.+.|.+
T Consensus 181 ql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 181 QLIAELLGLELLTNWLED 198 (532)
T ss_pred HHHHHhcccHHHHHHhhc
Confidence 456688999999999885
No 217
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=50.21 E-value=1.6e+02 Score=26.82 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCC--HHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----C
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG--IDALLRCIDDSGLQGNKTVARICCSLLSKLA----G 387 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Gg--i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~ 387 (508)
+..+..+|++. ++.....++..+..+..... -..+.+.|+ +..|+..|+.. + ...+.+.++.+|..|. +
T Consensus 27 ~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~-~--~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 27 VTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKP-D--PPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCC-C--CHHHHHHHHHHHHHHHHHhcC
Confidence 34566666653 33333333333333332211 233444444 56788888863 2 3478889999998875 4
Q ss_pred CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 388 SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 388 ~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
.++..+.+.- .-++.++..+-.-.++....+.++.+|..+-..+|.
T Consensus 102 ~p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 102 KPTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPT 147 (165)
T ss_pred CCchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCc
Confidence 5565655543 224444443322111245666777777776655554
No 218
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=50.04 E-value=3.3e+02 Score=29.33 Aligned_cols=134 Identities=11% Similarity=0.133 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~ 221 (508)
+.......+.-+.+..+- +..+-..-.-.+.|..++.+|.+. ...+....|+..+-++.... .+=.+.++.
T Consensus 147 ~~~~l~~ll~~l~nviKf--n~~~l~e~~i~~lv~~i~~iC~~T--s~~~di~~~L~vldaii~y~-----~iP~~sl~~ 217 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKF--NFNYLDEDEISSLVDQICTICKST--SSEDDIEACLSVLDAIITYG-----DIPSESLSP 217 (464)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHcC-----cCChHHHHH
Confidence 444556667777777765 221111222345677778887665 24455566777765554321 111234566
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh------HHHHHHHHHHHHhcCC
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN------DSIQSLYDAIRVLLTP 291 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~------~~~~~A~~aL~~L~~~ 291 (508)
++..|.+-.+..+....+.+++.+++..|-. .-++..|.++|...+. .+.+-|...|..+...
T Consensus 218 ~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 218 CIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred HHHHHhhHhcccccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 7777765444557777888899998754432 1245678888843221 4555566666655543
No 219
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.96 E-value=6e+02 Score=31.60 Aligned_cols=130 Identities=14% Similarity=0.200 Sum_probs=66.8
Q ss_pred HhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc--CCCHH
Q 010533 339 AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDAS 416 (508)
Q Consensus 339 ~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~--~~~~~ 416 (508)
+++...|.|.-.-|.|--+.+-+.|+-.+.+....-..-|..-++.|+... ++.+ +--++.||-=|.|| .+++.
T Consensus 938 ~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a--~~kl--~p~l~kLIPrLyRY~yDP~~~ 1013 (1702)
T KOG0915|consen 938 KISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA--GEKL--EPYLKKLIPRLYRYQYDPDKK 1013 (1702)
T ss_pred cchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH--HHhh--hhHHHHhhHHHhhhccCCcHH
Confidence 566666777777777776666677763221111111222333334443221 1111 11233444444443 44556
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
| ..|+.-+++.-..++.+...-.-..+..-|+.-|. +..-.|++.+|.||+.|..+
T Consensus 1014 V-q~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g 1069 (1702)
T KOG0915|consen 1014 V-QDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT--SKEWRVREASCLALADLLQG 1069 (1702)
T ss_pred H-HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcC
Confidence 5 45677777655455443322222334444444442 34568999999999999865
No 220
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=48.94 E-value=56 Score=31.96 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhcChhhHhHHhhcCCH-------HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCch-hHHHH-HhCC
Q 010533 329 SLISASIALKAVAVNDEICKSVAENGGI-------DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDS-NKSAI-IENG 399 (508)
Q Consensus 329 ~~~~a~~aL~~La~~~e~~~~i~e~Ggi-------~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~-~k~~I-v~~G 399 (508)
-+.-+..+|..|++.+.|..-|...|-. ..|++++... ++....+-|+.+|.+|+..++ ....| .+.+
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~---e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR---EDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc---cchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 3566778888899988888777776663 3445555542 345788999999999997654 33344 4667
Q ss_pred cHHHHHHHHhc
Q 010533 400 GMDKLIVVSAR 410 (508)
Q Consensus 400 gl~~Lv~lL~~ 410 (508)
.|..|+..+..
T Consensus 217 ~i~~Li~FiE~ 227 (257)
T PF12031_consen 217 CISHLIAFIED 227 (257)
T ss_pred hHHHHHHHHHH
Confidence 89999999984
No 221
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=48.57 E-value=2.3e+02 Score=26.34 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhCC------cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 010533 372 KTVARICCSLLSKLAGSDSNKSAIIENG------GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSG 445 (508)
Q Consensus 372 ~~v~~~al~aL~~La~~~~~k~~Iv~~G------gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i 445 (508)
..+...|+.+|+.+. +.| ++|.|+.+.. ++++.++..|...+..|..+++.....=.-. |+
T Consensus 22 ~~vr~~Al~~l~~il----------~qGLvnP~~cvp~lIAL~t--s~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~-gi 88 (187)
T PF12830_consen 22 DSVRLAALQVLELIL----------RQGLVNPKQCVPTLIALET--SPNPSIRSRAYQLLKELHEKHESLVESRYSE-GI 88 (187)
T ss_pred HHHHHHHHHHHHHHH----------hcCCCChHHHHhHhhhhhC--CCChHHHHHHHHHHHHHHHHhHHHHHHHHHH-HH
Confidence 378888888887753 333 5788888887 7889999999999999998777654443333 33
Q ss_pred HHHHHHHHcCCCcHH--H---HHHHHHHHHHhhhcCccchHHHHh
Q 010533 446 DLAIQAMLKFPNAQQ--L---QRSSCFMIRNLVARNPENSFCSVM 485 (508)
Q Consensus 446 ~~Lv~~L~~h~~~~~--v---q~~A~~aL~nL~~~~~e~~~~~~~ 485 (508)
....+.-+.-..+.. . .......+..++..+..+|+.|+.
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~ 133 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK 133 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH
Confidence 333333222111111 1 344556677777667778877775
No 222
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.43 E-value=2.1e+02 Score=31.64 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc---CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCC
Q 010533 279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI---GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGG 355 (508)
Q Consensus 279 ~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~---g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Gg 355 (508)
+.|-..+..|..++|.-..+++.+..+-..+-. |++..|+..--+..+.++...+..+|+-++.++. ..
T Consensus 515 e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~ 586 (926)
T COG5116 515 EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DL 586 (926)
T ss_pred HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------ch
Confidence 445555666666666555555555555555533 4555555542222245677788888877776542 23
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+.-.+++|.++. |+.|.....-+|+--+.+...+. ++..|-.++. ..+.-|++.||-++..+..
T Consensus 587 lv~tvelLs~sh---N~hVR~g~AvaLGiacag~G~~~------a~diL~~L~~--D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 587 LVGTVELLSESH---NFHVRAGVAVALGIACAGTGDKV------ATDILEALMY--DTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred hhHHHHHhhhcc---chhhhhhhHHHhhhhhcCCccHH------HHHHHHHHhh--CcHHHHHHHHHHHHHHHHh
Confidence 455667776532 44677666677765433222221 2344555565 4456788888888887654
No 223
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.29 E-value=3e+02 Score=27.30 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=108.5
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC---ChhHHHHHHHH
Q 010533 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL---SSPSLISASIA 336 (508)
Q Consensus 261 G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~---d~~~~~~a~~a 336 (508)
|..+.+++=|++. .....+...|..|+...+.+.. |.. +. +.+. =.+.+|.++..+.+.. ........+..
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~li-g~~-~~-rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~ 138 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLI-GDS-QS-RLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEA 138 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCcccc-CCC-Cc-cHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 4444555555543 2344456667767644433221 111 11 2222 2245777777776643 11344667777
Q ss_pred HHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHH
Q 010533 337 LKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDAS 416 (508)
Q Consensus 337 L~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~ 416 (508)
|+.+|... ..+++..++.....+.-....+-...++..|+.--..+-.. ..+-.|+++|. .+-+.
T Consensus 139 La~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~------~~l~~Ll~lL~--n~~~w 203 (262)
T PF14225_consen 139 LAQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEF------QILTFLLGLLE--NGPPW 203 (262)
T ss_pred HHHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHH------HHHHHHHHHHh--CCcHH
Confidence 77777332 13355556656554333334578888888887743322112 23557999998 55688
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
++..++.+|..|-. ..+..+. .....+.++.+++++. .-.+|...|.+.+.++
T Consensus 204 ~~~~~L~iL~~ll~-~~d~~~~-~~~dlispllrlL~t~-----~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 204 LRRKTLQILKVLLP-HVDMRSP-HGADLISPLLRLLQTD-----LWMEALEVLDEIVTRS 256 (262)
T ss_pred HHHHHHHHHHHHhc-cccCCCC-cchHHHHHHHHHhCCc-----cHHHHHHHHHHHHhhc
Confidence 99999999998863 4443333 4445688888888542 2257777887776554
No 224
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.69 E-value=76 Score=34.83 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=58.2
Q ss_pred cCcHHHHHHH-HhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010533 260 LKIDELILEI-LSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (508)
Q Consensus 260 ~G~i~~Lv~l-L~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~ 338 (508)
.|++..|+.. ....++++.++|.-+|..+|.+|- ..++..+++|....+..+..-.+.+|+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------------------~~lv~tvelLs~shN~hVR~g~AvaLG 611 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------------------DLLVGTVELLSESHNFHVRAGVAVALG 611 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc------------------chhhHHHHHhhhccchhhhhhhHHHhh
Confidence 3566666666 334455899998888888887663 345666777776556777777777775
Q ss_pred HhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533 339 AVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (508)
Q Consensus 339 ~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La 386 (508)
--+....... +++.|-.++.+.. .-|...|+-+++-+-
T Consensus 612 iacag~G~~~------a~diL~~L~~D~~----dfVRQ~AmIa~~mIl 649 (926)
T COG5116 612 IACAGTGDKV------ATDILEALMYDTN----DFVRQSAMIAVGMIL 649 (926)
T ss_pred hhhcCCccHH------HHHHHHHHhhCcH----HHHHHHHHHHHHHHH
Confidence 4443321111 2334444554432 246666666666653
No 225
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=46.68 E-value=4e+02 Score=29.46 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHH
Q 010533 190 KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEI 269 (508)
Q Consensus 190 ~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~l 269 (508)
++++..|+.++.-|+.| ++..|+..|++.|..+|..+++....+ +..|+.+
T Consensus 54 P~l~~~Ai~a~~DLcED------------------------ed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~Ql 104 (556)
T PF05918_consen 54 PDLQEEAINAQLDLCED------------------------EDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQL 104 (556)
T ss_dssp GGGHHHHHHHHHHHHT-------------------------SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHH
T ss_pred hhhHHHHHHHHHHHHhc------------------------ccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHH
Confidence 45566666666666654 356677777777777776554443333 4567777
Q ss_pred HhcCCh
Q 010533 270 LSRQRN 275 (508)
Q Consensus 270 L~~~~~ 275 (508)
|.+.+.
T Consensus 105 L~tdd~ 110 (556)
T PF05918_consen 105 LQTDDP 110 (556)
T ss_dssp TT---H
T ss_pred HhcccH
Confidence 776544
No 226
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=46.19 E-value=63 Score=30.28 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=54.9
Q ss_pred CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhhcC
Q 010533 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~--h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
...+.+..-+. ++++-+++.++-++...... +-.+.+...+.. +..+.-||+...|+|+.+..++
T Consensus 120 ~~~~~~~~W~~--s~~~w~rR~~~v~~~~~~~~-----------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 120 EALELLEKWAK--SDNEWVRRAAIVMLLRYIRK-----------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp GHHHHHHHHHH--CSSHHHHHHHHHCTTTHGGG-----------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 35566777777 78899999988887666543 334455555433 3345679999999999999999
Q ss_pred ccchHHHHhccc
Q 010533 477 PENSFCSVMVSR 488 (508)
Q Consensus 477 ~e~~~~~~~~g~ 488 (508)
|+....+++...
T Consensus 187 ~~~v~~~l~~~~ 198 (213)
T PF08713_consen 187 PDEVLEFLQKNS 198 (213)
T ss_dssp HHHHHHHHHHS-
T ss_pred HHHHHHHHHHCc
Confidence 999999998754
No 227
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.64 E-value=1.3e+02 Score=26.82 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+..|.+-|.. +++.++-.|+.+|..+..| +.....|...+.+..|+.++.. ..++.|++.++..+..-+
T Consensus 43 ~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 43 MRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHH
Confidence 3444444543 3458999999999999865 4567778888999999999975 457889999999888776
No 228
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=44.54 E-value=5.2e+02 Score=29.32 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHH
Q 010533 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT 199 (508)
Q Consensus 120 v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~a 199 (508)
-+.+|+.|...... |..+.-+-+..|.++.. ..+.|.+ ..-..|.|++.|.... ++-..+-.
T Consensus 272 ~~~aLrfLD~l~~k--------dn~qKs~Flk~Ls~~ip---~fp~rv~--~~kiLP~L~~el~n~~-----~vp~~LP~ 333 (700)
T KOG2137|consen 272 GLKALRFLDDLPQK--------DNSQKSSFLKGLSKLIP---TFPARVL--FQKILPTLVAELVNTK-----MVPIVLPL 333 (700)
T ss_pred hhhhhhhccccccc--------CcHHHHHHHHHHHHhhc---cCCHHHH--HHhhhhHHHHHhcccc-----ccccccch
Confidence 34455555544332 56667777777877765 3444443 4467899998875421 11111111
Q ss_pred HHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHH---HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH
Q 010533 200 MALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG---FAVVAASATGNEVVKESYMELKIDELILEILSRQRND 276 (508)
Q Consensus 200 La~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a---~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~ 276 (508)
+..+..+. + .........+.|..+++. ....++...- +.+|.+- ...| -++..++|.|...++..+-.
T Consensus 334 v~~i~~~~-s-~~~~~~~~~p~l~pi~~~-~~~~~~~l~i~e~mdlL~~K-t~~e-----~~~~~IlplL~~S~~~~~~~ 404 (700)
T KOG2137|consen 334 VLLIAEGL-S-QNEFGPKMLPALKPIYSA-SDPKQALLFILENMDLLKEK-TPPE-----EVKEKILPLLYRSLEDSDVQ 404 (700)
T ss_pred hhhhhhcc-c-hhhhhhhhhHHHHHHhcc-CCcccchhhHHhhHHHHHhh-CChH-----HHHHHHHHHHHHHhcCcchh
Confidence 11121111 0 122223344555555542 1111111111 1112211 1122 23345667777777654445
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCH
Q 010533 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI 356 (508)
Q Consensus 277 ~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi 356 (508)
++..+...+-.+...=| + ..+..-.+|.|.++-..+++..++.++..++..+. +.+.+ .-.+
T Consensus 405 iQ~~~L~~lptv~e~iD--~----------~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~---~~v~ 466 (700)
T KOG2137|consen 405 IQELALQILPTVAESID--V----------PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK---AAVL 466 (700)
T ss_pred hHHHHHHhhhHHHHhcc--H----------HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH---HHhH
Confidence 55555555544432111 1 13344568888888555556678888888888877 22222 2233
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
+.+.-++..- ...++.++-..+.+..++....-....++-...+|.++-+..
T Consensus 467 d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 467 DELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSV 518 (700)
T ss_pred HHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhh
Confidence 3333333321 111347888888888888754433344555577888887776
No 229
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=44.45 E-value=1e+02 Score=29.09 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=45.5
Q ss_pred HHHHHhCCcHHHHHHHHhccCCC----------------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc-
Q 010533 392 KSAIIENGGMDKLIVVSARFSDD----------------ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK- 454 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~lL~~~~~~----------------~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~- 454 (508)
...+.+.|++..++++|...... ..+...++..|..+|.+|++|+..+... ++.++..+..
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh
Confidence 44456777778888877642221 3678899999999999999999988764 3333333222
Q ss_pred CCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533 455 FPNAQQLQRSSCFMIRNLVARNPENSFCSVMV 486 (508)
Q Consensus 455 h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~ 486 (508)
+.... -.+.-+|..+...|++....+.+.
T Consensus 114 ~~~~~---~~~~d~l~~i~~dN~~L~~~i~e~ 142 (207)
T PF01365_consen 114 QIGYG---LGALDVLTEIFRDNPELCESISEE 142 (207)
T ss_dssp CH-TT---HHHHHHHHHHHTT-----------
T ss_pred hccCC---chHHHHHHHHHHCcHHHHHHhhHH
Confidence 11111 123444555556666666655443
No 230
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.23 E-value=2.7e+02 Score=31.79 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=59.6
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc-CChHHHHHHHHHHHHhcCCCcchhh
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~-~~~~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
-..+++-|.+. .++-++..+...+.-.=.+.- ..++|..|+.+--+ .+++|.+.|.-+|..++..|-
T Consensus 520 Ad~lI~el~~d-kdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---- 587 (929)
T KOG2062|consen 520 ADPLIKELLRD-KDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---- 587 (929)
T ss_pred hHHHHHHHhcC-CchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh----
Confidence 34444444332 355565555544433211111 23467777777443 455899999888887776552
Q ss_pred hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 010533 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (508)
Q Consensus 298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~ 343 (508)
.-++..|.+|..+.++.+..-++.+|+--+..
T Consensus 588 --------------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 588 --------------EQLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred --------------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 23577788888777888888888888655543
No 231
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=43.11 E-value=2.6e+02 Score=25.39 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH---------hcCCChhHHHH
Q 010533 263 DELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL---------HAGLSSPSLIS 332 (508)
Q Consensus 263 i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL---------~~~~d~~~~~~ 332 (508)
++.|+.+|++... ++.+++..+|..| |+++|-..-. ....+......
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGil-----------------------GALDP~~~k~~~~~~~~~~~~~~~~~~~~~ 68 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGIL-----------------------GALDPYKHKSIQKSLDSKSSENSNDESTDI 68 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhc-----------------------cccCcHHHhcccccCCccccccccccchhh
Q ss_pred HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
...........+|+...++ +..|++.|++..-. .-...++.++-.+......+-.--=.-.+|.+++.++ .
T Consensus 69 ~l~~~~~~~~~ee~y~~vv----i~~L~~iL~D~sLs---~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~--~ 139 (160)
T PF11865_consen 69 SLPMMGISPSSEEYYPTVV----INALMRILRDPSLS---SHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIR--T 139 (160)
T ss_pred HHhhccCCCchHHHHHHHH----HHHHHHHHHhhhhH---HHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHH--h
Q ss_pred CCHHHHHHHHHHHHHH
Q 010533 413 DDASVLQEVMSIITVL 428 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~L 428 (508)
..+..+|.-..-|+.|
T Consensus 140 ~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 140 CPDSLREFYFQQLADL 155 (160)
T ss_pred CCHHHHHHHHHHHHHH
No 232
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.13 E-value=2.3e+02 Score=24.64 Aligned_cols=95 Identities=6% Similarity=0.000 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHHHH
Q 010533 370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-NAARAMEAGSGDLA 448 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~-~~~~i~~~G~i~~L 448 (508)
+|..+.-+.|..+..- ....+ .++..|-.-|+ .+++.++..|+..|-.+..+... ....+........+
T Consensus 16 ~D~~~il~icd~I~~~--~~~~k------~a~raL~krl~--~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 16 PDWALNLELCDLINLK--PNGPK------EAARAIRKKIK--YGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred ccHHHHHHHHHHHhCC--CCCHH------HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 4556666767666542 11112 23456666676 56899999999999888865544 45566665777778
Q ss_pred HHHHHcC-CCcHHHHHHHHHHHHHhhh
Q 010533 449 IQAMLKF-PNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 449 v~~L~~h-~~~~~vq~~A~~aL~nL~~ 474 (508)
+.++... ..+..|++.+...|.+...
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 8888654 4567899988888887764
No 233
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=42.09 E-value=2.3e+02 Score=24.63 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhcc-CCCHHHHHHHHHHHHHHhc
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARF-SDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~-~~~~~v~e~a~~aL~~La~ 430 (508)
+..|.+-|.. +++.++-.|+.+|-.|..| +.....|.....+..|+.++... ..++.|++.+...|...+.
T Consensus 39 ~raL~krl~~----~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKY----GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444445543 3568999999999999854 34677788778888899999754 4578899999999988764
No 234
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=41.68 E-value=51 Score=26.55 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH-hhccccC
Q 010533 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDL 102 (508)
Q Consensus 62 ~~isQetfd~~v~eni~~~~m~p~eal~~aI~q~-~~qgvdL 102 (508)
-+|..+.. +-..+.++.+||++.+|++-.+.|+ ..+|+++
T Consensus 7 ~Rvd~~lK-~~a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF 47 (83)
T TIGR02384 7 IRIDEELK-KEAYAVFEELGLTPSTAIRMFLKQVIREQGLPF 47 (83)
T ss_pred EeeCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC
Confidence 45666666 6667788999999999999999998 7788866
No 235
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=41.23 E-value=13 Score=29.02 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=18.7
Q ss_pred HHHHhhcCCChhHHHHHHHHHHhhc
Q 010533 74 KENMEDLGMEPTEALQDAIQTLSLQ 98 (508)
Q Consensus 74 ~eni~~~~m~p~eal~~aI~q~~~q 98 (508)
++.+..-++.||.+++++|++|..+
T Consensus 46 ~~~l~~~~l~pn~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 46 RQPLSESDLIPNRALKSAIEEWCAE 70 (73)
T ss_dssp -SB-SGGGSEE-HHHHHHHHHHHHH
T ss_pred CCcCCcccceECHHHHHHHHHHHHH
Confidence 4567778999999999999999543
No 236
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=41.16 E-value=3.7e+02 Score=26.64 Aligned_cols=163 Identities=11% Similarity=0.110 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhcC-------ChhhHHHHHHcCcHHHHHHHHhcCC----hHHHHHHHHHHHHhcCCCcchhhhhhcc
Q 010533 234 EILNSGFAVVAASATG-------NEVVKESYMELKIDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVY 302 (508)
Q Consensus 234 ~v~~~a~~~L~~l~~~-------~e~nr~~i~~~G~i~~Lv~lL~~~~----~~~~~~A~~aL~~L~~~dd~r~~~~~a~ 302 (508)
...+.++.+|..+..- +.++|-.+.-.+.+|.++..+..+. +......+..|..+|...
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~---------- 146 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ---------- 146 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC----------
Confidence 3445555555555321 2223433333445666666666544 123344556666665221
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCC--C-hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533 303 GYARRFAKIGIARALVHSLHAGL--S-SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 303 ~~~~~i~~~g~i~~Lv~lL~~~~--d-~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
....+..++....++. + .+-+..++..|+.-...+ . +...+..|+++|.++. ..++...+
T Consensus 147 -------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-~-----~~~~l~~Ll~lL~n~~----~w~~~~~L 209 (262)
T PF14225_consen 147 -------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-H-----EFQILTFLLGLLENGP----PWLRRKTL 209 (262)
T ss_pred -------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-h-----HHHHHHHHHHHHhCCc----HHHHHHHH
Confidence 1133444555544433 2 344556666554433221 1 1123567888887643 28999999
Q ss_pred HHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 380 SLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
.+|+.|-..-+.+.. ...+-+.+|+++++ .+ ...+|..+|-++.
T Consensus 210 ~iL~~ll~~~d~~~~-~~~dlispllrlL~--t~---~~~eAL~VLd~~v 253 (262)
T PF14225_consen 210 QILKVLLPHVDMRSP-HGADLISPLLRLLQ--TD---LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHhccccCCCC-cchHHHHHHHHHhC--Cc---cHHHHHHHHHHHH
Confidence 999998654433333 34456888999987 32 3456666665543
No 237
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=40.45 E-value=2.9e+02 Score=25.26 Aligned_cols=93 Identities=12% Similarity=0.026 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~ 311 (508)
++.++..++.+++-+|..++..-+ ..++.+...|+..+..+.+.|.-.|..|...|-.++ +.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-------------k~ 62 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-------------KG 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-------------hh
Confidence 356778888888888877664332 457889999998877888999999999987664332 11
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~ 343 (508)
..+..++.++.+ +++++...+...+..+...
T Consensus 63 ~l~~~~l~~l~D-~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 63 QLFSRILKLLVD-ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhhHHHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 123666666654 3677877777777777664
No 238
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.80 E-value=38 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533 375 ARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 375 ~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
+...+..|..||..|+.-..+++.|+++.|+++|.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~ 97 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC
Confidence 34667888999999999999999999999999996
No 239
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=39.16 E-value=1.6e+02 Score=27.06 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=53.3
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhhcCccc
Q 010533 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLVARNPEN 479 (508)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~--h~~~~~vq~~A~~aL~nL~~~~~e~ 479 (508)
+.+-.-+. +++.-+++.++.++.....+ .+..+.+++.+.. +.++.-||+...|+|+.+...+|+.
T Consensus 108 ~~~~~w~~--s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~ 175 (197)
T cd06561 108 DLLEEWAK--SENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPER 175 (197)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 56666666 77888999998888877653 2234444444433 3345569999999999999998988
Q ss_pred hHHHHhccc
Q 010533 480 SFCSVMVSR 488 (508)
Q Consensus 480 ~~~~~~~g~ 488 (508)
...+++..+
T Consensus 176 v~~~l~~~~ 184 (197)
T cd06561 176 VIAFLEKNG 184 (197)
T ss_pred HHHHHHHHH
Confidence 888886543
No 240
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.11 E-value=2.1e+02 Score=25.50 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+..|.+=|.+ .++.++-.|+.+|..|..| +.....|...+.+..|+.++... .++.|++..+..|...+.
T Consensus 39 ~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 39 LKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHH
Confidence 3444444443 3458999999999999854 45677888889999999999853 678999999999888763
No 241
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.91 E-value=7.7e+02 Score=29.71 Aligned_cols=181 Identities=17% Similarity=0.229 Sum_probs=89.1
Q ss_pred ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--ChhhHhHHh
Q 010533 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDEICKSVA 351 (508)
Q Consensus 274 ~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e~~~~i~ 351 (508)
+..+|+-+.+.|..|+..+.... ...+..+ .....|.+-+++. +...+...+.+|..|-. +.+++..+.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~-------~~~q~i~-~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~ 737 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEG-------LVEQRID-DIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIP 737 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhh-------HHHHHHH-HHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34788889999998886532111 0111110 1123333333332 23466777777777664 346666655
Q ss_pred hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC----Cchh--H-HHHHhCCcHHHHHHHHhcc--CCCHHHHHHHH
Q 010533 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG----SDSN--K-SAIIENGGMDKLIVVSARF--SDDASVLQEVM 422 (508)
Q Consensus 352 e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~----~~~~--k-~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~ 422 (508)
.. |+-++-.+... |....+.++.+|-.+.. .++. + .+ .|...+..+... .+...+.-...
T Consensus 738 k~--I~EvIL~~Ke~----n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~-----~lnefl~~Isagl~gd~~~~~as~I 806 (1176)
T KOG1248|consen 738 KL--IPEVILSLKEV----NVKARRNAFALLVFIGAIQSSLDDGNEPASA-----ILNEFLSIISAGLVGDSTRVVASDI 806 (1176)
T ss_pred HH--HHHHHHhcccc----cHHHHhhHHHHHHHHHHHHhhhcccccchHH-----HHHHHHHHHHhhhcccHHHHHHHHH
Confidence 42 33333233432 33677788888777751 1111 1 22 233333333311 22233322223
Q ss_pred HHHHHHhcCChhhHHHHHhcC----cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533 423 SIITVLSLRSPENAARAMEAG----SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 423 ~aL~~La~~~~~~~~~i~~~G----~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
-++..+... ...+++.+ .+..+.-.|. ++++.+.+.|...|+-++..-|+.+
T Consensus 807 vai~~il~e----~~~~ld~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~ 862 (1176)
T KOG1248|consen 807 VAITHILQE----FKNILDDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEEC 862 (1176)
T ss_pred HHHHHHHHH----HhccccHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 444444432 22222333 3344444453 3567888888888888887666554
No 242
>PHA01748 hypothetical protein
Probab=37.27 E-value=56 Score=24.56 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHh
Q 010533 60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLS 96 (508)
Q Consensus 60 ~~~~isQetfd~~v~eni~~~~m~p~eal~~aI~q~~ 96 (508)
++-+|+++.. +-+.+.....+++..+++++||+++-
T Consensus 5 iSvrLp~el~-~eld~~a~~~g~~RSE~Ir~Ai~~~~ 40 (60)
T PHA01748 5 ITFKIEEDLL-ELLDRYAIKHGLNRSEAIRKAIEKMV 40 (60)
T ss_pred EEEECCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3456778887 66777888889999999999999873
No 243
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=35.69 E-value=1.8e+02 Score=31.40 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhh-----CCch---hHHHHHhCCcHHHHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533 373 TVARICCSLLSKLA-----GSDS---NKSAIIENGGMDKLIVVSA-RFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (508)
Q Consensus 373 ~v~~~al~aL~~La-----~~~~---~k~~Iv~~Ggl~~Lv~lL~-~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G 443 (508)
.++..+.+++++++ +-|. ....+.. --+..++++-. ...++..|+.++..+|.|+.. ..+.+.+.|
T Consensus 448 n~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~ 522 (728)
T KOG4535|consen 448 NVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPT 522 (728)
T ss_pred hHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhcc
Confidence 45667777777764 2222 2222210 01233333222 223446788888888888762 233333333
Q ss_pred cHHHHHHHHHc------CCCcHHHHHHHHHHHHHhhhc
Q 010533 444 SGDLAIQAMLK------FPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 444 ~i~~Lv~~L~~------h~~~~~vq~~A~~aL~nL~~~ 475 (508)
..+.+-..|.. .+...+||-+||.++.||..+
T Consensus 523 ~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 523 FAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 33222222211 234578999999999999873
No 244
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=34.20 E-value=14 Score=36.80 Aligned_cols=10 Identities=60% Similarity=1.291 Sum_probs=4.4
Q ss_pred CCcchhhhcc
Q 010533 3 TVPKSYYKHF 12 (508)
Q Consensus 3 ~~~~~~~~~~ 12 (508)
||||+||+||
T Consensus 62 ~VPK~wF~HF 71 (304)
T KOG1640|consen 62 TVPKRWFSHF 71 (304)
T ss_pred cCcHHHHHHH
Confidence 3444444443
No 245
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.51 E-value=3.4e+02 Score=30.24 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=65.4
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhh--cCChhhH
Q 010533 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASA--TGNEVVK 254 (508)
Q Consensus 177 ~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~--~~~e~nr 254 (508)
.+-.+|+....+|..+...+++.|+.+.+.-..-.+.+-.|-+..|.+=+- ..++.|...|..+|...- +.+|+|+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhccCChHHH
Confidence 344455544446889999999999988764432334555555555554331 346788888888887652 3455554
Q ss_pred HHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCc
Q 010533 255 ESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDD 293 (508)
Q Consensus 255 ~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd 293 (508)
. ...|+.++++... ++.+.| |.++..+..
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~a---llni~vdns 199 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLA---LLNISVDNS 199 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHH---HHHeeeCCC
Confidence 3 3467788887544 565543 777876553
No 246
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=33.25 E-value=5.4e+02 Score=26.22 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=74.8
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhC-----------CcHHHHHHHHhcc----CCCHHHHH
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIEN-----------GGMDKLIVVSARF----SDDASVLQ 419 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~-----------Ggl~~Lv~lL~~~----~~~~~v~e 419 (508)
+..|++++-........+++.+|+.++.... +|++.+.++++. .....|+..|-.+ +.++--.=
T Consensus 36 i~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~w 115 (312)
T PF04869_consen 36 IDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCW 115 (312)
T ss_dssp HHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHH
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHH
Confidence 4455555443221124578889999999875 688888888763 1122355544322 12332233
Q ss_pred HHHHHHHHHhcCChhhHHHHHhc--C----c------HHHHHHHHHc---CCCcHHHHHHHHHHHHHhhhcCccchHHHH
Q 010533 420 EVMSIITVLSLRSPENAARAMEA--G----S------GDLAIQAMLK---FPNAQQLQRSSCFMIRNLVARNPENSFCSV 484 (508)
Q Consensus 420 ~a~~aL~~La~~~~~~~~~i~~~--G----~------i~~Lv~~L~~---h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~ 484 (508)
-|+.+|.+|-.+|++.+..+..- | + +..+...|.. +..++.++-.-.+.|.--...+|.-...|+
T Consensus 116 fAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL 195 (312)
T PF04869_consen 116 FAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFL 195 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 57788888887788776665532 1 1 3445555433 234555555545555555568899999999
Q ss_pred hcccccc
Q 010533 485 MVSRNLS 491 (508)
Q Consensus 485 ~~g~~~~ 491 (508)
.+|.++.
T Consensus 196 ~~~s~l~ 202 (312)
T PF04869_consen 196 SEGSNLQ 202 (312)
T ss_dssp CSTTHHH
T ss_pred cCcchHH
Confidence 9987654
No 247
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=32.43 E-value=77 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc
Q 010533 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (508)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~ 365 (508)
-.....+..||..++....+++.|+++.|+.+|.+
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~H 98 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSH 98 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCC
Confidence 34556677899999999999999999999999975
No 248
>PRK09169 hypothetical protein; Validated
Probab=32.14 E-value=1.3e+03 Score=30.27 Aligned_cols=110 Identities=13% Similarity=0.237 Sum_probs=59.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHH-hhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHH-HHhcCCh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSK-LAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIIT-VLSLRSP 433 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~-La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~-~La~~~~ 433 (508)
+.-+++.|..-++. .....+...|.. |+..+..... .+.-++.-++..|.+++.... .+.+...|+ .|. +++
T Consensus 669 LaN~LnALSKWp~~---~~c~~Aa~aLA~rl~~~~~~~~~-f~aq~lAn~LnAlsKwp~~~a-cr~A~~~LA~rL~-~~~ 742 (2316)
T PRK09169 669 LANALNALSKWPDE---AACRAAALALAERLAREAGLRQA-FDAQGVANALNALSKWPEEEA-CRAAAEALAGRLA-ADA 742 (2316)
T ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHHhhcchhhhhh-cCHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHh-cCh
Confidence 33444555554432 344444444433 3332222222 233456677777777765544 444444444 454 567
Q ss_pred hhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 434 ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 434 ~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
+.... ++.-++...+.+|.+.+.++.++..+......+
T Consensus 743 ~l~~a-~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~l 780 (2316)
T PRK09169 743 DLRQA-MNPQGLANSLNALSKWPQEPACQQAALLLAERL 780 (2316)
T ss_pred HHHhh-cCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 77666 344556677788889998887765444444444
No 249
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=32.07 E-value=40 Score=27.49 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHhhccccCCCc
Q 010533 72 VVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGI 105 (508)
Q Consensus 72 ~v~eni~~~~m~p~eal~~aI~q~~~qgvdLs~i 105 (508)
||-|+-..+ .+|.|.+|++||..+++--++|
T Consensus 53 vvlEyA~rL---SqEIl~dAlqQWA~~n~kY~DI 83 (91)
T PF15127_consen 53 VVLEYAHRL---SQEILSDALQQWAENNIKYSDI 83 (91)
T ss_pred hhHHHHHHH---HHHHHHHHHHHHHHhCccccCC
Confidence 344444444 3567899999998888866655
No 250
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=32.05 E-value=29 Score=29.72 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=56.1
Q ss_pred hccCCchhhhhhhhhhcccCCCCCCCCCCcC-----CCcccccccCCccCCCCcchhhhhhHHHHHHHHHH--HHhhcCC
Q 010533 10 KHFSNSEQIDFQKQSSLITLPQPRAHPFVPK-----DHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKE--NMEDLGM 82 (508)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~e--ni~~~~m 82 (508)
.+||.++-.|= +..+..-+-+|-+.+|||. +|.||.+. .+.+||..-+|+.- |=+.|-.
T Consensus 11 r~l~eddkvq~-ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~-------------y~~~rE~i~~VIetll~~~~f~V 76 (130)
T COG5611 11 RFLSEDDKVQT-KAEQFFEELSQKGKLFIPEEVLIELVYVLEHG-------------YKWEREDIYEVIETLLNDELFNV 76 (130)
T ss_pred HHHhhhhhHHH-HHHHHHHhcCcCCCccchHHHHHHHHHHHHhc-------------chhhHHHHHHHHHHHhcccccee
Confidence 45565555554 2333445556778899997 45677653 56789999777764 5566778
Q ss_pred ChhHHHHHHHHHHhhccccCCC
Q 010533 83 EPTEALQDAIQTLSLQGVDLSG 104 (508)
Q Consensus 83 ~p~eal~~aI~q~~~qgvdLs~ 104 (508)
+..+++++|++++...-.|+++
T Consensus 77 ~~~d~i~~A~~~Y~k~kadF~D 98 (130)
T COG5611 77 ELKDFIREAIKLYSKRKADFLD 98 (130)
T ss_pred cchHHHHHHHHHHHhccccHHH
Confidence 8899999999999665557654
No 251
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.51 E-value=8.4e+02 Score=27.96 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=30.5
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhc
Q 010533 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH 205 (508)
Q Consensus 162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~ 205 (508)
.|.+|..+...|++..++..|.... ..+.+.-|-.+|..|+.
T Consensus 364 ~p~FR~~lRa~G~v~~vfkalmDs~--~~d~Lsl~tsalMylLs 405 (865)
T KOG2152|consen 364 MPDFRMHLRAHGMVDAVFKALMDSH--EDDLLSLCTSALMYLLS 405 (865)
T ss_pred ChHHHHHHHHcccHHHHHHHHhccc--cchhhHHHHHHHHHHHh
Confidence 7999999999999999999887653 22334444556666653
No 252
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=31.27 E-value=98 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH-hhccccCC
Q 010533 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLS 103 (508)
Q Consensus 63 ~isQetfd~~v~eni~~~~m~p~eal~~aI~q~-~~qgvdLs 103 (508)
+|..+.- +-..+-++++||++..|++-...|. ..+|++++
T Consensus 7 RiD~~lK-~~A~~vl~~lGls~S~Ai~~fl~qi~~~~~iPF~ 47 (80)
T PRK11235 7 RVDDELK-ARAYAVLEKLGVTPSEALRLLLQYVAENGRLPFK 47 (80)
T ss_pred EeCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 4555555 4456688999999999999999998 77888775
No 253
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=30.73 E-value=7e+02 Score=26.77 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHH--hccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCC---cHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 356 IDALLRCI--DDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENG---GMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 356 i~~Lv~lL--~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~G---gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+..|...| .+.....+..+.+-|+..|+.+.. ..+.+-.-+..+ .++.+..+|+ .+++.|--..+..+.++-
T Consensus 252 i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~--~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 252 IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK--SNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh--CCCCeehHHHHHHHHHHH
Confidence 45666777 222222345677777777777643 322222122222 4566666666 334444444444444443
No 254
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=30.34 E-value=4.6e+02 Score=24.48 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hc-----CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHh
Q 010533 279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KI-----GIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVA 351 (508)
Q Consensus 279 ~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~-----g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~ 351 (508)
.+|...|..++..-+.|.-+ .|+..+. +. +.-+.|+..+-..+++.+...++.+|..|-... .+-....
T Consensus 4 ~~Al~~L~al~k~~~~r~l~----~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 4 QAALQCLQALAKSTDKRSLF----GYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred HHHHHHHHHHHHhcCCceeH----hhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 34444555555443333322 2444444 22 245666666665455667777777776655432 1111111
Q ss_pred hcCC-------------------HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhcc
Q 010533 352 ENGG-------------------IDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARF 411 (508)
Q Consensus 352 e~Gg-------------------i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~ 411 (508)
+..+ -..|+..|.... +..+..+.+.+|..|..+ |=.|- +.|-++.++.-+..+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~---~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~ 153 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK---SPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPL 153 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHH
Confidence 1111 134566676532 347888999999999753 33332 235566666554321
Q ss_pred --CCCHHHHHHHHHHHHHHhc
Q 010533 412 --SDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 412 --~~~~~v~e~a~~aL~~La~ 430 (508)
..|+.++..+..++..|..
T Consensus 154 l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 154 LRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HhcCCCcHHHHHHHHHHHHHc
Confidence 3567888888888887764
No 255
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=29.73 E-value=3.1e+02 Score=24.38 Aligned_cols=93 Identities=9% Similarity=0.018 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHH
Q 010533 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS-PENAARAMEAGSGDLAI 449 (508)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~-~~~~~~i~~~G~i~~Lv 449 (508)
|..+.-+.|..+.. .....+ .++..|..=|. .+++.++-.|+..|-.+..+- ......+...+.+..|+
T Consensus 21 dw~~ileicD~In~--~~~~~k------~a~ral~krl~--~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 21 DLASILEICDMIRS--KDVQPK------YAMRALKKRLL--SKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK 90 (142)
T ss_pred CHHHHHHHHHHHhC--CCCCHH------HHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 44555566666642 111112 34556666666 478999999988888887542 44567777888899999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 450 QAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 450 ~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
.++.. ..++.|++.+...|..-+.
T Consensus 91 ~l~~~-~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 91 DLIKT-TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHcc-cCCHHHHHHHHHHHHHHHH
Confidence 98875 3567899888888877653
No 256
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.15 E-value=1.3e+02 Score=33.44 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhC----Cc------hhHHHHHhCCcHHHHHHHHhc--cCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533 372 KTVARICCSLLSKLAG----SD------SNKSAIIENGGMDKLIVVSAR--FSDDASVLQEVMSIITVLSLRSPENAARA 439 (508)
Q Consensus 372 ~~v~~~al~aL~~La~----~~------~~k~~Iv~~Ggl~~Lv~lL~~--~~~~~~v~e~a~~aL~~La~~~~~~~~~i 439 (508)
..+...|+-+++.|.. .. ......+....++.|...+.. ...+..-+.-++.+|.|+-. |.
T Consensus 449 ~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~----- 521 (618)
T PF01347_consen 449 PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PE----- 521 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GG-----
T ss_pred hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--ch-----
Confidence 3677777777777752 21 011111222345566665541 13345666777888888853 33
Q ss_pred HhcCcHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhhcCccch
Q 010533 440 MEAGSGDLAIQAMLKF-PNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 440 ~~~G~i~~Lv~~L~~h-~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
.++.+...+... .....++..|.|||+.++...|+..
T Consensus 522 ----~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v 559 (618)
T PF01347_consen 522 ----SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV 559 (618)
T ss_dssp ----GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH
T ss_pred ----hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH
Confidence 445555555433 3345677889999998877766433
No 257
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=28.85 E-value=3e+02 Score=29.90 Aligned_cols=107 Identities=12% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHH----HHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcC---CCcch-hhhhhc
Q 010533 231 EDPEILNSGFAVVAASATGNEVVKES----YMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLT---PDDDQ-VVASQV 301 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~e~nr~~----i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~---~dd~r-~~~~~a 301 (508)
+.+.+....++++. ....+.+.. +.+.+.|+.|+..|... +.+++.+|+..|..+.. +.... ...-+-
T Consensus 31 ~~~~ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igp 107 (475)
T PF04499_consen 31 DTPAIMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGP 107 (475)
T ss_pred CCcHHHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCc
Confidence 34555555555554 222223333 34679999999999743 44788889888877642 21100 000011
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010533 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (508)
Q Consensus 302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L 340 (508)
.+-.+.++....+..|++.+-.......+.++...+-.|
T Consensus 108 n~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieL 146 (475)
T PF04499_consen 108 NPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIEL 146 (475)
T ss_pred cHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 344556665556666666665311123444444444333
No 258
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=28.24 E-value=2.1e+02 Score=23.39 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHH-hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 372 KTVARICCSLLSKLAGSDSNKSAII-ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 372 ~~v~~~al~aL~~La~~~~~k~~Iv-~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
..++..++..|+.|....+ ..+. ..+.+..+...|+ .+++-|=-+|...|+.|+...|+
T Consensus 17 ~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~--d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK--DEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred cchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHHHHChH
Confidence 4799999999999975444 1222 2244566677776 55778889999999999987775
No 259
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=28.11 E-value=7.7e+02 Score=28.77 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCC
Q 010533 83 EPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEG 162 (508)
Q Consensus 83 ~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~ 162 (508)
+.+||++..++.++.++.+.. +... +.+..+......+ .+......++..|..+|+. ..
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~---~~~~-----------~ll~~~~ki~~kD------aN~~v~~~aa~~l~~ia~~-lr 327 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIV---KGYT-----------GLLGILLKIRLKD------ANINVVMLAAQILELIAKK-LR 327 (815)
T ss_pred HHHHHHHHHHHHHhccccccc---cCcc-----------hHHHHHHHHhccC------cchhHHHHHHHHHHHHHHh-cc
Confidence 367888888888888772221 1111 1122222222211 1466667788888888875 13
Q ss_pred hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHH
Q 010533 163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAV 242 (508)
Q Consensus 163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~ 242 (508)
+..+.. ..++.|.|+.-+......-.+.+..|+.++.+... -..-.+.++..|+. .++.+...+..+
T Consensus 328 ~~~~~~--~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~---------l~~~~~~I~e~lk~--knp~~k~~~~~~ 394 (815)
T KOG1820|consen 328 PLFRKY--AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP---------LSKMSEAILEALKG--KNPQIKGECLLL 394 (815)
T ss_pred hhhHHH--HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHhcC--CChhhHHHHHHH
Confidence 333333 34667888887765321123445555555554211 01123445555553 355555555544
Q ss_pred HHHh
Q 010533 243 VAAS 246 (508)
Q Consensus 243 L~~l 246 (508)
+...
T Consensus 395 l~r~ 398 (815)
T KOG1820|consen 395 LDRK 398 (815)
T ss_pred HHHH
Confidence 4443
No 260
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=27.92 E-value=3.8e+02 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=29.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 010533 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (508)
Q Consensus 305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~ 342 (508)
..-+.+.+.|+.|+++|....+...+.+++..|..+..
T Consensus 55 lewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 55 LEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 33445779999999999854467788999988877654
No 261
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=37 Score=33.85 Aligned_cols=42 Identities=31% Similarity=0.548 Sum_probs=29.0
Q ss_pred chhhhccCCchhhhhhhhhh----------cccCCCCC-------CCCCCcCCC-cccccc
Q 010533 6 KSYYKHFSNSEQIDFQKQSS----------LITLPQPR-------AHPFVPKDH-PFFVRT 48 (508)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~-~~~~~~ 48 (508)
..||++|.+ ...=|...|+ |.+.+.|| -+|+|-.|| |||+|.
T Consensus 232 p~f~~~~~~-t~~wF~Rl~~iE~~l~~~g~l~s~r~~~~~Fq~~~~~~~veDDHiPFlrrg 291 (338)
T KOG3946|consen 232 PTFYNFFPN-TDRWFHRLQSIEGELALLGLLASHRLPPRYFQPGGLSSVVEDDHIPFLRRG 291 (338)
T ss_pred hhHhhcCcc-hHHHHHHHHHHHHHHHHHHHHHhccCCchhccccCccccccCCcchhhhcC
Confidence 468999988 4444444444 78889888 456677765 888886
No 262
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.73 E-value=1e+03 Score=27.59 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 010533 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 412 ~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
-.+..++-.|+.+|+.+...++.....| ...+.+++.. .+..|+..|..+|.++-
T Consensus 477 LEn~ivRaaAv~alaKfg~~~~~l~~sI-----~vllkRc~~D--~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQDVVLLPSI-----LVLLKRCLND--SDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCCccccH-----HHHHHHHhcC--chHHHHHHHHHHHHHhh
Confidence 3466788889999999886665443322 3345555532 45678888888888876
No 263
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.95 E-value=1.7e+02 Score=25.79 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhHhHHhhcC-CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHHHHhCCcHHHHHHHHhccCCCHH--HHH
Q 010533 345 EICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDAS--VLQ 419 (508)
Q Consensus 345 e~~~~i~e~G-gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~--v~e 419 (508)
+.|..|-... +....++.|...-.++++.++-.|+.+|-.|. ..+.....|.....+..|..++......+. |++
T Consensus 28 ~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~ 107 (140)
T PF00790_consen 28 EICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKE 107 (140)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHH
Q ss_pred HHHHHHHHHh
Q 010533 420 EVMSIITVLS 429 (508)
Q Consensus 420 ~a~~aL~~La 429 (508)
.+...|...+
T Consensus 108 k~l~ll~~W~ 117 (140)
T PF00790_consen 108 KILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 264
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=26.46 E-value=1.5e+02 Score=32.83 Aligned_cols=69 Identities=12% Similarity=0.270 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH
Q 010533 373 TVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA 451 (508)
Q Consensus 373 ~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~ 451 (508)
....-|...|..... .|+..+. ++..++++.. ..+..|+.+|...|-.+|..+++....++ ..|+++
T Consensus 37 k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE--Ded~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~Ql 104 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE--DEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQL 104 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT---SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh--cccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHH
Confidence 455555556666543 4444432 4556777776 56677888888888888877777766653 456676
Q ss_pred HH
Q 010533 452 ML 453 (508)
Q Consensus 452 L~ 453 (508)
|.
T Consensus 105 L~ 106 (556)
T PF05918_consen 105 LQ 106 (556)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 265
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=1.2e+03 Score=27.95 Aligned_cols=322 Identities=14% Similarity=0.062 Sum_probs=160.9
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
.++.|.+.+.+ .|..--=+|.+.+.+..++ .| +..+. .+|...++++.-. .+...--.++-+|+.
T Consensus 342 vie~Lls~l~d-------~dt~VrWSaAKg~grvt~r--lp--~~Lad--~vi~svid~~~p~--e~~~aWHgacLaLAE 406 (1133)
T KOG1943|consen 342 VIEHLLSALSD-------TDTVVRWSAAKGLGRVTSR--LP--PELAD--QVIGSVIDLFNPA--EDDSAWHGACLALAE 406 (1133)
T ss_pred HHHHHHHhccC-------CcchhhHHHHHHHHHHHcc--Cc--HHHHH--HHHHHHHHhcCcC--CchhHHHHHHHHHHH
Confidence 44455554444 3777667788888888886 55 22222 3566667754432 222333345566666
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhc------CCCCHHHHHHHHHHHHHhhcCChhh--HHHHHHcCcHHHHHHHHhcCC
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILID------GNEDPEILNSGFAVVAASATGNEVV--KESYMELKIDELILEILSRQR 274 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~------~~~~~~v~~~a~~~L~~l~~~~e~n--r~~i~~~G~i~~Lv~lL~~~~ 274 (508)
++...=-.+.. -...+|.+++.|.- ++.-..|...||.+++..+..++.+ +. +...=.-.+|+..+=...
T Consensus 407 LA~rGlLlps~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 407 LALRGLLLPSL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDRE 484 (1133)
T ss_pred HHhcCCcchHH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCch
Confidence 55321000000 01234455554420 1223346666666666554333322 22 211111112222221111
Q ss_pred hHHHHHHHHHHHHhcCC-Ccc-------------hhhh-hhcch-HHHHHHh-cCCHHHHHHHHhcCC----ChhHHHHH
Q 010533 275 NDSIQSLYDAIRVLLTP-DDD-------------QVVA-SQVYG-YARRFAK-IGIARALVHSLHAGL----SSPSLISA 333 (508)
Q Consensus 275 ~~~~~~A~~aL~~L~~~-dd~-------------r~~~-~~a~~-~~~~i~~-~g~i~~Lv~lL~~~~----d~~~~~~a 333 (508)
-...++|.+|+.-.... .+. .+.. ++.+. -++.|++ .|...++++-|-... |..+.+-+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 15678888888765422 111 1110 11122 3444554 367777777665443 67788999
Q ss_pred HHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc--------hhHHHHHhCC---cH
Q 010533 334 SIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD--------SNKSAIIENG---GM 401 (508)
Q Consensus 334 ~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~--------~~k~~Iv~~G---gl 401 (508)
+++|.+|+. .+++- ..+.+++++...... +.....-+..+.+.+.++. ...+..+. | -+
T Consensus 565 a~aL~~Ls~~~pk~~----a~~~L~~lld~~ls~----~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~-~l~~ii 635 (1133)
T KOG1943|consen 565 AYALHKLSLTEPKYL----ADYVLPPLLDSTLSK----DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA-GLLSII 635 (1133)
T ss_pred HHHHHHHHHhhHHhh----cccchhhhhhhhcCC----ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh-hhhhhc
Confidence 999999886 33432 245567777655432 2234433333333332111 11111111 2 12
Q ss_pred HHHHH-HHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 402 DKLIV-VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 402 ~~Lv~-lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+++.. -..+.. ..-.+...|..+-.+...++......+-.+.-..+.+.+ ++++ .++..|-|++..+++
T Consensus 636 ~~~~~~~~~rg~-~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~~n--~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 636 PPICDRYFYRGQ-GTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TLPN--QIRDAAVSAVSDLVS 705 (1133)
T ss_pred cHHHHHHhccch-HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cchH--HHHHHHHHHHHHHHH
Confidence 22222 222211 245667778888888877776666666666666777766 3443 677788888888875
No 266
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=25.78 E-value=1.4e+03 Score=28.65 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChh-h-HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CC
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDE-I-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GS 388 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e-~-~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~ 388 (508)
+.+..++..|.. +...+...|..+|+.+..-+. . +..-+..|... +++.+ +..|.++|+.+++... ..
T Consensus 816 ~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~---R~~Ds-----sasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 816 PYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG---RLNDS-----SASVREAALDLVGRFVLSI 886 (1692)
T ss_pred HHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH---hhccc-----hhHHHHHHHHHHhhhhhcc
Confidence 456667777763 235677888888988876432 2 22233322211 22222 3589999999998753 34
Q ss_pred chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHH-HHHHHHH
Q 010533 389 DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQ-LQRSSCF 467 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~-vq~~A~~ 467 (508)
++.....- ..|.+=+. -....|++.+...|+-+|...|+... .....++++.+-.++++ +++-++.
T Consensus 887 ~e~~~qyY-----~~i~erIl--DtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 887 PELIFQYY-----DQIIERIL--DTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred HHHHHHHH-----HHHHhhcC--CCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHH
Confidence 33332222 12222222 23467999999999999987775422 12344455544444444 6666666
Q ss_pred HHHHh
Q 010533 468 MIRNL 472 (508)
Q Consensus 468 aL~nL 472 (508)
.+.++
T Consensus 954 tf~kl 958 (1692)
T KOG1020|consen 954 TFLKL 958 (1692)
T ss_pred HHHHH
Confidence 65555
No 267
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=25.40 E-value=1e+03 Score=26.95 Aligned_cols=178 Identities=17% Similarity=0.118 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHH---HCCcHHHHHHHHhcccCCCHHHHHH
Q 010533 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVAT---KNGGVELVCSICYKMRCGSKRVLDS 195 (508)
Q Consensus 119 ~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~---~~Gavp~Lv~lL~~~~~~~~~~~~~ 195 (508)
+..+.+..|.-.+.- ..+.+..||..||-+.+. ..-+-..+- .+..+..++..+. .+...+..
T Consensus 542 e~~~~l~~l~~l~~w--------p~~~~fPalDilRl~v~h--~~~~s~~~~~~~~~~~~~~li~~~~----~~~an~ll 607 (745)
T KOG0301|consen 542 EVLQSLLALAILLQW--------PVEMMFPALDILRLAVKH--HSSNSLFCDREEGQNLVGTLIPILN----ADPANQLL 607 (745)
T ss_pred hhHHHHHHHHHHhcC--------CHHHhhhHHHHHHHHHhc--cchhhhhhhhhhhhHHHHhhhcccc----cchhHHHH
Confidence 355555555555444 588899999999998876 222222222 1223444444443 23445555
Q ss_pred HHHHHHHhhcCCcchhHHHhcCChHHHHHHHh-cC-CCCHHHHHHHHHHHHHhh-cCChhhHHHHHHcCcHHHHHHHHhc
Q 010533 196 CLKTMALLVHDVQSTETFRTGGGPKLLVNILI-DG-NEDPEILNSGFAVVAASA-TGNEVVKESYMELKIDELILEILSR 272 (508)
Q Consensus 196 al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~-~~-~~~~~v~~~a~~~L~~l~-~~~e~nr~~i~~~G~i~~Lv~lL~~ 272 (508)
++..|+++..+.-.+.-+... ...+...+- .. .++..++........|.+ .-...+- +.|+.+.|..++..
T Consensus 608 ~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~ 681 (745)
T KOG0301|consen 608 VVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAIST 681 (745)
T ss_pred HHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHh
Confidence 667777776654333333222 222222211 01 122333321111111110 1111111 14666777666665
Q ss_pred CCh-----HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533 273 QRN-----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326 (508)
Q Consensus 273 ~~~-----~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d 326 (508)
..+ ++.--..-||.+|+..+. .++++++.-.+.-+++-+++...
T Consensus 682 ~~e~~~d~EA~yR~l~AlgtL~t~~~----------~~~~~A~~~~v~sia~~~~~~~~ 730 (745)
T KOG0301|consen 682 LLEPVDDLEAIYRLLVALGTLMTVDA----------SVIQLAKNRSVDSIAKKLKEAVS 730 (745)
T ss_pred hcccchhHHHHHHHHHHHHhhccccH----------HHHHHHHhcCHHHHHHHHHHhcc
Confidence 322 211123456677776653 35567665667777777776443
No 268
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=25.32 E-value=5.2e+02 Score=24.41 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=46.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF 481 (508)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~ 481 (508)
+.+..... +++.-.++.|+.+......+ .+-. -+..++..+.. .++.-||+...|+||.++.++|+-..
T Consensus 118 ~~l~~W~~--s~~~W~rR~ai~~~l~~~~~--~~~~------~l~~~~~~~~~-d~e~fI~KAiGW~LRe~~k~d~~~V~ 186 (208)
T cd07064 118 PVMDEWST--DENFWLRRTAILHQLKYKEK--TDTD------LLFEIILANLG-SKEFFIRKAIGWALREYSKTNPDWVR 186 (208)
T ss_pred HHHHHHHc--CCcHHHHHHHHHHHHHHHHc--cCHH------HHHHHHHHhCC-ChHHHHHHHHHHHHHHHhccCHHHHH
Confidence 34444555 66777888777654333221 1111 11122333322 23445888899999999999999999
Q ss_pred HHHhccc
Q 010533 482 CSVMVSR 488 (508)
Q Consensus 482 ~~~~~g~ 488 (508)
.|++...
T Consensus 187 ~fl~~~~ 193 (208)
T cd07064 187 DFVAAHK 193 (208)
T ss_pred HHHHHhh
Confidence 9997764
No 269
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=25.02 E-value=1.3e+02 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=20.1
Q ss_pred HhhcCCChhHHHHHHHHHHhhcccc
Q 010533 77 MEDLGMEPTEALQDAIQTLSLQGVD 101 (508)
Q Consensus 77 i~~~~m~p~eal~~aI~q~~~qgvd 101 (508)
.-.|.| |+++|+..+.|-+.-|+.
T Consensus 95 FVSfSM-P~~sLk~Ll~qa~~~G~p 118 (212)
T PRK13730 95 FVSFSI-PEEGLKRMLGETRHYGIP 118 (212)
T ss_pred EEEcCC-CHHHHHHHHHHHHHhCCc
Confidence 357899 999999999999777764
No 270
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=24.85 E-value=1.2e+02 Score=24.26 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH-hhccccCC
Q 010533 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLS 103 (508)
Q Consensus 63 ~isQetfd~~v~eni~~~~m~p~eal~~aI~q~-~~qgvdLs 103 (508)
+|..+.- +-..+.++.+||++..|++-.+.|. ..+|+++.
T Consensus 7 Rid~~lK-~~a~~il~~~Glt~s~ai~~fl~qiv~~~~iPF~ 47 (83)
T PF04221_consen 7 RIDEELK-EEAEAILEELGLTLSDAINMFLKQIVREGGIPFE 47 (83)
T ss_dssp EE-HHHH-HHHHHHHHHTT--HHHHHHHHHHHHHHHSS-S--
T ss_pred EcCHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCcc
Confidence 4556666 5566789999999999999999998 77888763
No 271
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.69 E-value=4.7e+02 Score=22.77 Aligned_cols=95 Identities=7% Similarity=0.033 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHH
Q 010533 370 GNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS-PENAARAMEAGSGDLA 448 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~-~~~~~~i~~~G~i~~L 448 (508)
+|.+..-+.|..+.. .....+. ++..|-.=|. +.++.++-.|+..|-.+..+. +.....+...+.+..|
T Consensus 16 ~dw~~~l~icD~i~~--~~~~~k~------a~r~l~krl~--~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L 85 (133)
T smart00288 16 EDWELILEICDLINS--TPDGPKD------AVRLLKKRLN--NKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNEL 85 (133)
T ss_pred cCHHHHHHHHHHHhC--CCccHHH------HHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHH
Confidence 345565666666633 1111222 3445666666 578999999998888887642 4456777788889999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 449 IQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 449 v~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+.++..++..+.|++.+...+..-+.
T Consensus 86 ~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 86 VKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 99888766655588887777766553
No 272
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=24.21 E-value=4e+02 Score=22.17 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHH
Q 010533 373 TVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSI 424 (508)
Q Consensus 373 ~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~a 424 (508)
...+.++..|..|+.++.....+.+-|+++.|-++-. ..++..+...-..
T Consensus 45 ~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~--~~~~~~~~~id~i 94 (98)
T PF14726_consen 45 PMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP--NVEPNLQAEIDEI 94 (98)
T ss_pred ccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 4778999999999999999999999999999666654 3345555544433
No 273
>PF15573 Imm27: Immunity protein 27
Probab=23.88 E-value=3.7e+02 Score=25.99 Aligned_cols=33 Identities=15% Similarity=0.410 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCChHHHHHHH-HHHHHhcCCCcch
Q 010533 263 DELILEILSRQRNDSIQSLY-DAIRVLLTPDDDQ 295 (508)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~A~-~aL~~L~~~dd~r 295 (508)
=++|+++|+...++++.+.| +..+++|+.||-|
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~THdDL~ 81 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVATHDDLR 81 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcchHhhh
Confidence 36789999988888877755 6777888888754
No 274
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=23.73 E-value=5.2e+02 Score=22.92 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=51.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhcc----CCCHHHHHHHHHHHHHHh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARF----SDDASVLQEVMSIITVLS 429 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~----~~~~~v~e~a~~aL~~La 429 (508)
+..|.+-|.+ .++.++-.|+.+|-.|..| +.....|...+.+.-|+.++..+ ..++.|++..+..|-.-+
T Consensus 40 ~rai~krl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 40 VRLLAHKIQS----PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4445555543 3558888999999998753 46778888889999999999632 246789999888887665
No 275
>PHA01623 hypothetical protein
Probab=23.72 E-value=1.3e+02 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred chhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 010533 59 KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (508)
Q Consensus 59 ~~~~~isQetfd~~v~eni~~~~m~p~eal~~aI~q~ 95 (508)
.+.-+|..+.+ .-+.......+|+..+++++||..|
T Consensus 15 r~sVrldeel~-~~Ld~y~~~~g~~rSe~IreAI~~y 50 (56)
T PHA01623 15 VFGIYMDKDLK-TRLKVYCAKNNLQLTQAIEEAIKEY 50 (56)
T ss_pred eEEEEeCHHHH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34455666766 6677788888999999999999887
No 276
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.57 E-value=5.5e+02 Score=26.25 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (508)
|..+++-+++- ...+-..+|.+++.+.. .++.+.. -++.++..|-......+.-|.+.|-.+|..+..+-.-.
T Consensus 131 ii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~ 204 (334)
T KOG2933|consen 131 IIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ 204 (334)
T ss_pred HHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH
Confidence 44444444432 24566778888888776 3344443 22333333322223335678999999998886542211
Q ss_pred HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
-.++.|+..++ ..++.++..++....+...
T Consensus 205 ------~~L~~L~~~~~--~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 205 ------KLLRKLIPILQ--HSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred ------HHHHHHHHHHh--hhchhhhhhhhccccccce
Confidence 23556667776 3467888888877666544
No 277
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=23.07 E-value=3e+02 Score=22.07 Aligned_cols=69 Identities=4% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~ 384 (508)
..+.|+..++....+.+++.-...++..+..+.. .-... |=+.+++.+.....+.+.+++..|..++..
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRG---ENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---HHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4578899988776677788888888877765422 12223 567777777754443345788888877653
No 278
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=23.00 E-value=8.1e+02 Score=24.92 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHHc-----------CcHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCc
Q 010533 231 EDPEILNSGFAVVAASATGNEVVKESYMEL-----------KIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDD 293 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-----------G~i~~Lv~lL~~~------~~~~~~~A~~aL~~L~~~dd 293 (508)
..-.++..|+.++...+.+|++.|..|+.. .....|+..|-.. +.-...-||.+|..|..++.
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 356788899999999999999999887642 1122355555522 11223347888888887653
Q ss_pred chhhhhhcchHHHHH---Hh-cC-----CHHHHHHHHhc----CCChhHHHHHH-HHHHHhhcChhhHhHHhhcC-CHHH
Q 010533 294 DQVVASQVYGYARRF---AK-IG-----IARALVHSLHA----GLSSPSLISAS-IALKAVAVNDEICKSVAENG-GIDA 358 (508)
Q Consensus 294 ~r~~~~~a~~~~~~i---~~-~g-----~i~~Lv~lL~~----~~d~~~~~~a~-~aL~~La~~~e~~~~i~e~G-gi~~ 358 (508)
.. .+.++.+ .+ .| .|+.+..+|.. ..++.+..-.. ....-|..+..-...+.+.| .++.
T Consensus 130 ~~------Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~ 203 (312)
T PF04869_consen 130 EA------KEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQS 203 (312)
T ss_dssp HH------HHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHH
T ss_pred HH------HHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHH
Confidence 21 1222222 01 11 35667777665 22333333222 22344666777777777665 6899
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhh---C--Cc----hhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533 359 LLRCIDDSGLQGNKTVARICCSLLSKLA---G--SD----SNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (508)
Q Consensus 359 Lv~lL~~~~~~~~~~v~~~al~aL~~La---~--~~----~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~ 420 (508)
|+.......+ .+.-|+--|+-+|+-+- . ++ +....|.+.=|.+..+.-|.+...++.....
T Consensus 204 Li~~~~~~~~-~~~~VqGL~A~LLGicyef~~~~s~~~R~~l~~ll~~riG~d~y~~kl~~lr~~~~f~~~ 273 (312)
T PF04869_consen 204 LIEFSNQSSS-EDVLVQGLCAFLLGICYEFSTKDSPIPRATLHPLLTKRIGRDNYFSKLEQLRKSPLFRDA 273 (312)
T ss_dssp HHHHHS--TC-CCHHHHHHHHHHHHHHHHT-S-SCCC-HHHHHHHHHHHT-HHHHHHHHHCCCCSTTHHHH
T ss_pred HHHHhhcCCC-CcchHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHhcChhhhcc
Confidence 9988655433 33444444444444432 1 11 1233344556788888888776666665444
No 279
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=9.2e+02 Score=29.84 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhH-hHHhhcC
Q 010533 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC-KSVAENG 354 (508)
Q Consensus 276 ~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~-~~i~e~G 354 (508)
.+++-+...|+-++.|--...|+++ | .+.|+.++..-+..+|-++--.+.+.+|+++..=.++ +...+.+
T Consensus 901 ~ivrlgf~~lrlIssDfLqSLp~sc-------i--~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~ 971 (1610)
T KOG1848|consen 901 KIVRLGFSCLRLISSDFLQSLPTSC-------I--LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDS 971 (1610)
T ss_pred hHHHhhhhhhhhhhhcchhcCChHH-------H--HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhh
Confidence 4566666667766543322222221 1 1456666665555555545445555666655422221 1122222
Q ss_pred CHHHHHHHHhccCCCCcHHHHHHHHHH--HHHhhCCchhHHHHHhCCcHHHHHHHHhccCC
Q 010533 355 GIDALLRCIDDSGLQGNKTVARICCSL--LSKLAGSDSNKSAIIENGGMDKLIVVSARFSD 413 (508)
Q Consensus 355 gi~~Lv~lL~~~~~~~~~~v~~~al~a--L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~ 413 (508)
.-...++-+.... +.+++.-++++. +..|+..-++-+.=|+.|+++.+.+.+..|+.
T Consensus 972 ~~~~~~e~~~ss~--~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~ 1030 (1610)
T KOG1848|consen 972 CAYNSVEDLYSSM--KSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGS 1030 (1610)
T ss_pred hhhcchhhhcccc--cchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcc
Confidence 2122222222211 122455555442 34444322222233355777777777776543
No 280
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.48 E-value=1.2e+03 Score=26.61 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=56.7
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n 253 (508)
.+|.|..+++..+ ..+....-++.+-.|.+.- ....+....+|.|...++ ..+..+|+.++..+...+..-+
T Consensus 350 ~~p~l~pi~~~~~--~~~~~l~i~e~mdlL~~Kt--~~e~~~~~IlplL~~S~~--~~~~~iQ~~~L~~lptv~e~iD-- 421 (700)
T KOG2137|consen 350 MLPALKPIYSASD--PKQALLFILENMDLLKEKT--PPEEVKEKILPLLYRSLE--DSDVQIQELALQILPTVAESID-- 421 (700)
T ss_pred hhHHHHHHhccCC--cccchhhHHhhHHHHHhhC--ChHHHHHHHHHHHHHHhc--CcchhhHHHHHHhhhHHHHhcc--
Confidence 4666666666432 2222222233333333211 134445556666666665 4578888998888877753322
Q ss_pred HHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhc
Q 010533 254 KESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLL 289 (508)
Q Consensus 254 r~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~ 289 (508)
..+++.-++|.|-.+--.+.. .++.++..++..|.
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 344555567777666333333 55556555555444
No 281
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=21.86 E-value=1.3e+03 Score=26.92 Aligned_cols=171 Identities=12% Similarity=0.106 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhc--CCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELI 266 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~L 266 (508)
+..-...++..+...+.... .....+....+..+++. ...+..+...++.+|..+|...-..-..+ ..++.+.|
T Consensus 266 ~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~-~~~v~p~l 341 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY-AKNVFPSL 341 (815)
T ss_pred chHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH-HHhhcchH
Confidence 33444455555555444321 12233333333333321 12356677777788877775543332222 22567777
Q ss_pred HHHHhcCCh---HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH-hhc
Q 010533 267 LEILSRQRN---DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA-VAV 342 (508)
Q Consensus 267 v~lL~~~~~---~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~-La~ 342 (508)
++-+..... +++..++.++.+-+.. ...++.++..++.+ ++.........+.. +..
T Consensus 342 ld~lkekk~~l~d~l~~~~d~~~ns~~l-------------------~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 342 LDRLKEKKSELRDALLKALDAILNSTPL-------------------SKMSEAILEALKGK-NPQIKGECLLLLDRKLRK 401 (815)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHhcccH-------------------HHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhh
Confidence 777765433 5555666666652211 12456777777764 55444443222322 222
Q ss_pred ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (508)
Q Consensus 343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La 386 (508)
.+. ..+..+.+..++..+-.+..+.+++|..++..++..+.
T Consensus 402 ~~~---~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 402 LGP---KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred cCC---cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 221 22333344444444443332235689998888887764
No 282
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=20.16 E-value=3e+02 Score=22.49 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=46.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc-chH
Q 010533 403 KLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE-NSF 481 (508)
Q Consensus 403 ~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e-~~~ 481 (508)
..+..+. .+.+.++-+|+..|+.|..... ...+-..+++..+...++ ++ ++-|=-+|...|..|+...|+ ...
T Consensus 7 ~al~~L~--dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~-d~-DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 7 EALSDLN--DPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLK-DE-DSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHHHcc--CCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcC-CC-CchHHHHHHHHHHHHHHHChHHHHH
Confidence 3444454 5567889999999999885433 222222344555555554 43 344556777788888877666 444
Q ss_pred HHHh
Q 010533 482 CSVM 485 (508)
Q Consensus 482 ~~~~ 485 (508)
.+++
T Consensus 81 ~L~~ 84 (92)
T PF10363_consen 81 ILLD 84 (92)
T ss_pred HHHH
Confidence 4443
Done!