Query 010533
Match_columns 508
No_of_seqs 285 out of 1455
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmz_A APC variant protein; pr 100.0 1.1E-36 3.7E-41 322.2 31.9 343 123-479 71-455 (458)
2 3ul1_B Importin subunit alpha- 100.0 6E-36 2E-40 322.3 32.2 336 123-488 58-402 (510)
3 3nmz_A APC variant protein; pr 100.0 1.8E-36 6.1E-41 320.5 27.2 339 121-488 31-422 (458)
4 3tpo_A Importin subunit alpha- 100.0 1.4E-34 4.9E-39 312.8 36.6 336 123-488 77-421 (529)
5 3now_A UNC-45 protein, SD10334 100.0 2.6E-34 8.7E-39 320.5 34.4 438 12-488 257-751 (810)
6 3l6x_A Catenin delta-1; cateni 100.0 3.3E-34 1.1E-38 310.1 30.8 353 123-492 91-493 (584)
7 3nmw_A APC variant protein; AR 100.0 2.9E-34 1E-38 294.8 26.0 280 189-480 45-340 (354)
8 3ul1_B Importin subunit alpha- 100.0 2.6E-33 8.7E-38 301.8 29.4 393 10-474 65-478 (510)
9 3l6x_A Catenin delta-1; cateni 100.0 6.6E-33 2.2E-37 299.9 30.3 335 123-488 49-446 (584)
10 1xm9_A Plakophilin 1; armadill 100.0 1.6E-32 5.4E-37 291.7 30.0 333 124-488 4-420 (457)
11 3tpo_A Importin subunit alpha- 100.0 2.8E-32 9.4E-37 294.9 30.0 392 10-473 84-496 (529)
12 4b8j_A Importin subunit alpha- 100.0 1.3E-30 4.4E-35 280.7 37.3 336 122-488 74-415 (528)
13 1xm9_A Plakophilin 1; armadill 100.0 1.8E-31 6E-36 283.7 27.6 339 122-480 44-454 (457)
14 3nmw_A APC variant protein; AR 100.0 9.9E-32 3.4E-36 276.0 24.0 278 140-437 43-341 (354)
15 3now_A UNC-45 protein, SD10334 100.0 5.5E-31 1.9E-35 293.8 26.5 335 122-488 290-709 (810)
16 1wa5_B Importin alpha subunit; 100.0 3.7E-29 1.3E-33 269.8 38.2 334 124-487 89-428 (530)
17 1jdh_A Beta-catenin; beta-cate 100.0 4.3E-29 1.5E-33 267.4 35.4 342 122-488 17-398 (529)
18 4b8j_A Importin subunit alpha- 100.0 7.4E-29 2.5E-33 267.0 32.0 392 11-475 83-497 (528)
19 2jdq_A Importin alpha-1 subuni 100.0 3.8E-28 1.3E-32 254.6 35.7 334 124-487 22-361 (450)
20 1jdh_A Beta-catenin; beta-cate 100.0 5E-28 1.7E-32 259.2 32.5 318 123-471 60-423 (529)
21 2z6h_A Catenin beta-1, beta-ca 100.0 9.8E-28 3.3E-32 265.1 34.7 341 123-488 15-395 (644)
22 1wa5_B Importin alpha subunit; 100.0 1.6E-27 5.6E-32 256.9 33.8 389 12-475 97-511 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 4.5E-27 1.5E-31 246.4 33.1 324 123-477 65-393 (450)
24 2z6h_A Catenin beta-1, beta-ca 100.0 1.5E-26 5E-31 255.7 36.9 333 122-477 140-530 (644)
25 2z6g_A B-catenin; FULL-length, 100.0 7E-27 2.4E-31 263.8 33.8 342 122-488 150-531 (780)
26 4hxt_A De novo protein OR329; 99.9 4E-26 1.4E-30 220.1 26.8 242 217-478 2-245 (252)
27 2z6g_A B-catenin; FULL-length, 99.9 2.3E-25 7.8E-30 251.4 36.1 333 123-477 277-666 (780)
28 4db8_A Armadillo-repeat protei 99.9 8.2E-26 2.8E-30 219.1 22.1 238 217-474 12-251 (252)
29 4hxt_A De novo protein OR329; 99.9 1.6E-24 5.5E-29 208.8 25.4 240 173-433 2-244 (252)
30 4db8_A Armadillo-repeat protei 99.9 2.9E-24 1E-28 208.1 20.7 237 173-430 12-251 (252)
31 3tt9_A Plakophilin-2; cell adh 99.9 1.2E-23 4.1E-28 202.8 18.5 204 218-431 9-230 (233)
32 3opb_A SWI5-dependent HO expre 99.9 9.8E-23 3.4E-27 223.8 26.2 327 120-474 332-728 (778)
33 3tt9_A Plakophilin-2; cell adh 99.9 3.1E-23 1.1E-27 199.9 17.3 200 262-475 9-230 (233)
34 4db6_A Armadillo repeat protei 99.9 4E-22 1.4E-26 187.9 22.8 198 259-474 10-209 (210)
35 3opb_A SWI5-dependent HO expre 99.9 5.5E-22 1.9E-26 217.9 26.5 281 191-487 349-696 (778)
36 4db6_A Armadillo repeat protei 99.9 1.2E-21 4E-26 184.6 22.6 202 211-430 6-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.9 5.3E-20 1.8E-24 184.1 23.6 224 234-473 55-286 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 1.8E-19 6.1E-24 180.3 24.1 183 190-388 54-239 (296)
39 3grl_A General vesicular trans 99.7 5.3E-15 1.8E-19 159.0 30.0 343 118-486 17-406 (651)
40 3grl_A General vesicular trans 99.6 5.2E-14 1.8E-18 151.3 24.1 300 174-487 22-355 (651)
41 4gmo_A Putative uncharacterize 99.1 4.9E-10 1.7E-14 124.4 16.1 200 262-473 35-257 (684)
42 1oyz_A Hypothetical protein YI 99.1 1.6E-08 5.6E-13 98.9 24.0 252 123-470 24-278 (280)
43 4fdd_A Transportin-1; heat rep 99.1 1.3E-09 4.4E-14 123.7 17.0 311 123-475 129-472 (852)
44 1oyz_A Hypothetical protein YI 99.1 1.7E-08 5.9E-13 98.7 22.9 240 168-484 18-258 (280)
45 4gmo_A Putative uncharacterize 99.0 4.3E-09 1.5E-13 116.8 14.7 172 312-488 34-228 (684)
46 3ltm_A Alpha-REP4; protein eng 98.9 7.7E-08 2.6E-12 89.9 19.0 188 216-476 18-205 (211)
47 3ltm_A Alpha-REP4; protein eng 98.9 6.2E-08 2.1E-12 90.6 18.2 187 172-431 18-204 (211)
48 3ltj_A Alpharep-4; protein eng 98.9 1.2E-07 4.3E-12 87.8 18.2 185 216-473 13-197 (201)
49 3ltj_A Alpharep-4; protein eng 98.8 1.1E-07 3.9E-12 88.0 17.0 184 173-429 14-197 (201)
50 2vgl_B AP-2 complex subunit be 98.8 4.4E-07 1.5E-11 98.8 21.7 303 122-480 121-425 (591)
51 4fdd_A Transportin-1; heat rep 98.7 5.3E-07 1.8E-11 102.2 20.8 319 142-480 372-748 (852)
52 1ibr_B P95, importin beta-1 su 98.6 2.5E-07 8.5E-12 96.1 13.4 283 172-475 127-438 (462)
53 1w63_A Adapter-related protein 98.5 5.9E-06 2E-10 90.4 22.7 263 173-484 179-461 (618)
54 2vgl_B AP-2 complex subunit be 98.5 1.9E-05 6.6E-10 85.8 25.6 294 142-479 62-387 (591)
55 1qgr_A Protein (importin beta 98.5 9.9E-06 3.4E-10 91.2 23.3 314 142-475 143-480 (876)
56 1b3u_A Protein (protein phosph 98.5 9.7E-06 3.3E-10 86.7 22.1 292 143-473 295-586 (588)
57 1w63_A Adapter-related protein 98.4 3.4E-05 1.2E-09 84.4 25.4 291 123-478 108-418 (618)
58 1b3u_A Protein (protein phosph 98.4 2.9E-05 1E-09 82.9 22.9 288 142-473 100-391 (588)
59 2bpt_A Importin beta-1 subunit 98.3 0.00026 8.8E-09 79.4 29.1 327 122-475 134-483 (861)
60 1ibr_B P95, importin beta-1 su 98.2 2.2E-05 7.5E-10 81.2 15.3 272 142-431 143-438 (462)
61 2bpt_A Importin beta-1 subunit 98.2 6.5E-05 2.2E-09 84.3 20.2 305 142-475 382-712 (861)
62 1qgr_A Protein (importin beta 98.2 5.4E-05 1.8E-09 85.1 19.4 283 172-477 127-440 (876)
63 1ho8_A Vacuolar ATP synthase s 98.0 0.0025 8.5E-08 66.5 26.0 287 168-476 72-478 (480)
64 2vgl_A Adaptor protein complex 97.9 0.00069 2.4E-08 74.1 21.3 266 173-483 187-479 (621)
65 1ho8_A Vacuolar ATP synthase s 97.9 0.0012 4.1E-08 68.8 21.7 241 178-430 172-476 (480)
66 4ady_A RPN2, 26S proteasome re 97.8 0.0058 2E-07 69.0 26.4 246 174-479 430-681 (963)
67 2vgl_A Adaptor protein complex 97.7 0.042 1.4E-06 59.8 31.2 296 122-475 111-434 (621)
68 1u6g_C TIP120 protein, CAND1; 97.5 0.00065 2.2E-08 79.9 13.9 269 124-433 8-287 (1230)
69 3b2a_A TON_1937, putative unch 97.4 0.0031 1.1E-07 59.5 14.8 184 173-389 33-220 (265)
70 1u6g_C TIP120 protein, CAND1; 97.3 0.0034 1.2E-07 73.7 16.3 278 175-478 8-288 (1230)
71 3dad_A FH1/FH2 domain-containi 97.2 0.0052 1.8E-07 61.2 14.4 156 315-477 121-289 (339)
72 3dad_A FH1/FH2 domain-containi 97.2 0.015 5E-07 57.9 17.2 139 142-287 131-283 (339)
73 1te4_A Conserved protein MTH18 97.1 7.1E-05 2.4E-09 64.4 0.2 119 261-427 12-130 (131)
74 2qk2_A LP04448P; mini spindles 97.1 0.014 4.9E-07 55.1 15.8 182 265-474 19-205 (242)
75 1te4_A Conserved protein MTH18 97.1 7.4E-05 2.5E-09 64.3 -0.5 119 312-471 12-130 (131)
76 2qk2_A LP04448P; mini spindles 96.8 0.011 3.9E-07 55.8 12.3 180 221-430 19-205 (242)
77 4ady_A RPN2, 26S proteasome re 96.5 0.4 1.4E-05 54.2 24.3 207 175-429 509-718 (963)
78 3b2a_A TON_1937, putative unch 96.4 0.035 1.2E-06 52.4 12.5 182 218-431 34-219 (265)
79 2db0_A 253AA long hypothetical 96.3 0.33 1.1E-05 44.1 17.7 214 216-474 31-246 (253)
80 2qk1_A Protein STU2; STU2P, XM 96.2 0.17 5.8E-06 48.3 16.8 200 267-485 22-232 (249)
81 2iw3_A Elongation factor 3A; a 95.8 1.6 5.6E-05 49.6 24.8 284 142-472 27-322 (986)
82 3tjz_B Coatomer subunit gamma; 95.5 0.15 5.1E-06 51.5 13.3 215 174-437 105-323 (355)
83 2qk1_A Protein STU2; STU2P, XM 95.4 0.29 1E-05 46.6 14.6 181 230-429 27-219 (249)
84 2db0_A 253AA long hypothetical 95.3 0.99 3.4E-05 41.1 16.4 188 262-486 33-222 (253)
85 2iw3_A Elongation factor 3A; a 94.8 7.4 0.00025 44.3 30.0 258 122-428 54-322 (986)
86 3c2g_A SYS-1 protein; beta-cat 94.2 0.76 2.6E-05 45.7 13.8 137 331-473 261-402 (619)
87 3c2g_A SYS-1 protein; beta-cat 94.2 5.1 0.00017 40.0 22.6 289 162-470 273-614 (619)
88 2x1g_F Cadmus; transport prote 93.6 1.9 6.5E-05 48.9 18.1 222 189-430 477-722 (971)
89 1wa5_C Importin alpha RE-expor 93.5 8.8 0.0003 43.4 23.5 225 234-474 261-525 (960)
90 2fv2_A RCD1 required for cell 93.2 1.9 6.5E-05 41.1 14.3 159 191-351 71-233 (268)
91 2fv2_A RCD1 required for cell 92.8 3.3 0.00011 39.4 15.3 173 236-428 73-266 (268)
92 1wa5_C Importin alpha RE-expor 92.8 10 0.00034 43.0 22.5 184 232-429 471-669 (960)
93 2x19_B Importin-13; nuclear tr 92.6 5.2 0.00018 45.1 19.9 222 189-429 462-713 (963)
94 2f31_A Diaphanous protein homo 92.6 1.6 5.4E-05 41.0 13.0 130 345-479 35-184 (233)
95 3tjz_B Coatomer subunit gamma; 91.3 4.4 0.00015 40.6 15.3 89 372-475 118-206 (355)
96 3l9t_A Putative uncharacterize 91.1 5.5 0.00019 37.5 14.6 156 315-501 73-234 (240)
97 2x1g_F Cadmus; transport prote 90.6 6.6 0.00023 44.4 17.9 217 232-474 477-722 (971)
98 2x19_B Importin-13; nuclear tr 89.8 14 0.00049 41.4 19.7 219 231-474 461-714 (963)
99 2bnx_A Diaphanous protein homo 89.2 7 0.00024 39.6 14.9 130 345-479 39-188 (386)
100 3eg5_B Protein diaphanous homo 88.9 8.9 0.00031 38.7 15.5 129 345-478 101-249 (383)
101 3ibv_A Exportin-T; karyopherin 88.6 5.3 0.00018 45.6 15.0 313 142-475 206-567 (980)
102 3eg5_B Protein diaphanous homo 88.3 15 0.0005 37.2 16.5 152 211-366 104-276 (383)
103 2f31_A Diaphanous protein homo 87.5 8.6 0.00029 35.9 13.3 151 211-365 38-209 (233)
104 3ebb_A Phospholipase A2-activa 87.5 22 0.00076 34.6 17.4 138 232-382 161-300 (304)
105 4hat_C Exportin-1; heat repeat 86.0 1.7 5.8E-05 50.0 8.9 97 370-475 465-570 (1023)
106 3ebb_A Phospholipase A2-activa 85.9 10 0.00034 37.1 13.3 161 314-481 105-270 (304)
107 4hat_C Exportin-1; heat repeat 84.3 6.3 0.00021 45.3 12.5 144 326-477 466-621 (1023)
108 1upk_A MO25 protein; transfera 83.3 37 0.0013 33.5 21.3 204 255-474 72-283 (341)
109 2bnx_A Diaphanous protein homo 80.8 32 0.0011 34.6 15.0 152 211-366 42-214 (386)
110 3ibv_A Exportin-T; karyopherin 79.1 62 0.0021 36.8 18.3 191 262-474 491-730 (980)
111 1upk_A MO25 protein; transfera 77.0 60 0.0021 32.0 17.9 174 305-488 71-254 (341)
112 1lsh_A Lipovitellin (LV-1N, LV 76.7 16 0.00054 42.1 12.4 111 314-438 393-515 (1056)
113 4ffb_C Protein STU2; tubulin f 75.0 52 0.0018 30.9 14.0 151 263-430 57-212 (278)
114 3a6p_A Exportin-5; exportin-5, 67.7 1.8E+02 0.0063 33.6 20.2 231 218-473 46-330 (1204)
115 3m1i_C Exportin-1; heat repeat 56.2 2.6E+02 0.0089 31.6 18.7 191 217-431 48-264 (1049)
116 3gjx_A Exportin-1; transport, 54.4 59 0.002 37.4 11.2 100 370-478 491-599 (1073)
117 4ffb_C Protein STU2; tubulin f 52.7 1.5E+02 0.005 27.6 12.3 182 142-342 22-212 (278)
118 3oc3_A Helicase MOT1, MOT1; re 50.0 15 0.0005 39.2 4.7 162 233-429 242-403 (800)
119 3m1i_C Exportin-1; heat repeat 45.7 1E+02 0.0035 35.0 11.5 100 326-430 466-569 (1049)
120 2of3_A ZYG-9; multifunctional 44.0 89 0.0031 29.7 9.0 64 174-246 168-234 (266)
121 2k9i_A Plasmid PRN1, complete 43.8 26 0.0009 24.1 4.0 36 59-95 11-46 (55)
122 3gjx_A Exportin-1; transport, 38.5 51 0.0017 37.9 7.3 98 327-430 493-595 (1073)
123 4dvg_B Diaphanous protein; cyt 37.2 2.3E+02 0.0079 25.5 12.5 105 315-421 69-178 (353)
124 3oc3_A Helicase MOT1, MOT1; re 36.6 57 0.0019 34.9 6.6 252 118-425 171-431 (800)
125 3gae_A Protein DOA1; UFD3, CDC 36.1 28 0.00096 32.9 4.0 106 372-480 104-223 (253)
126 2cpg_A REPA protein, transcrip 29.9 61 0.0021 21.1 3.9 33 63-96 8-40 (45)
127 1t06_A Hypothetical protein; s 28.3 1.1E+02 0.0038 28.2 6.7 97 371-487 91-193 (235)
128 3ldz_A STAM-1, signal transduc 24.5 1.5E+02 0.0053 24.9 6.4 67 357-429 45-113 (140)
129 3qml_C Protein SLS1, nucleotid 24.3 4.9E+02 0.017 25.2 12.2 154 222-428 27-187 (315)
130 3l9t_A Putative uncharacterize 21.3 5E+02 0.017 24.1 12.2 137 268-441 78-218 (240)
131 3g2s_A C-terminal fragment of 21.0 2.5E+02 0.0086 23.9 7.1 71 356-430 50-126 (149)
132 4fxe_A Antitoxin RELB; toxin/a 21.0 1.3E+02 0.0045 22.9 4.6 40 63-103 7-47 (79)
133 1x5b_A Signal transducing adap 20.5 2.8E+02 0.0096 23.9 7.4 84 345-429 38-124 (163)
134 1juq_A ADP-ribosylation factor 20.2 1.7E+02 0.0057 25.6 5.9 85 345-429 36-127 (171)
135 1lsh_A Lipovitellin (LV-1N, LV 20.1 9.7E+02 0.033 27.1 23.6 127 266-432 445-578 (1056)
136 2of3_A ZYG-9; multifunctional 20.1 5.4E+02 0.019 24.1 17.5 65 313-386 168-235 (266)
No 1
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=322.17 Aligned_cols=343 Identities=13% Similarity=0.125 Sum_probs=283.5
Q ss_pred HHHHHHHHhhcCCC-----CCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcH----------HHHHHHHhccc-
Q 010533 123 SLERLKQLDLNSKD-----KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGV----------ELVCSICYKMR- 186 (508)
Q Consensus 123 ~l~~L~~~l~~~~~-----~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gav----------p~Lv~lL~~~~- 186 (508)
++..|.+++..... +-..++.+.+.+|++.|.++... .++......+.|++ +.+++++.+..
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHS--QPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHH--SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHcc--CcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 46667777765310 11225679999999999999987 67777788888888 77778787642
Q ss_pred CCC----------HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhh
Q 010533 187 CGS----------KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASA 247 (508)
Q Consensus 187 ~~~----------~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~ 247 (508)
..+ ...+++|+++|.++..+.+.|..+++.||++.|+.+|... ..+..++..|+|+|.++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 011 1346689999999987777899999999999999999521 134678999999999999
Q ss_pred cCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533 248 TGNEVVKESYMEL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326 (508)
Q Consensus 248 ~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d 326 (508)
..++.+|..+... |+||.|+.+|++++.+++..|||+|++|+..++. ++...|++.|+|++|+++|....+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~I~~~GaI~~LV~lLl~s~~ 300 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKK 300 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH--------HHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHcCCHHHHHHHHhcCCC
Confidence 8888888888755 5599999999988889999999999999975321 244567799999999998766557
Q ss_pred hhHHHHHHHHHHHhhc-ChhhHhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCchhHHHHHhCCc
Q 010533 327 SPSLISASIALKAVAV-NDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGG 400 (508)
Q Consensus 327 ~~~~~~a~~aL~~La~-~~e~~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~Gg 400 (508)
..++..++.+|++|+. .++++..|+ +.||++.|+.+|....+..+.++++.|+++|++|+ ++++++..|++.|+
T Consensus 301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 7899999999999999 889999988 79999999999986533211258999999999998 58999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533 401 MDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479 (508)
Q Consensus 401 l~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~ 479 (508)
+|.|+.+|. +.+..++++|+++|+||+.++++++..+++.|+++.|+++|+. .+..+++.|+|||+||+.++|+-
T Consensus 381 i~~Lv~LL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s--~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 381 LQTLLQHLK--SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHSS--CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHc--CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHhh
Confidence 999999998 6678999999999999998899999999999999999999953 57899999999999999988754
No 2
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6e-36 Score=322.27 Aligned_cols=336 Identities=12% Similarity=0.146 Sum_probs=290.4
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
+++.|...+.+. |.+.+.+|+..+|++.+.+ ..+....++++|+||.||++|++. ++.+++..|+|+|++
T Consensus 58 ~i~~~v~~l~s~-------d~~~q~~a~~~~rklls~e-~~ppi~~ii~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~n 127 (510)
T 3ul1_B 58 SVEDIVKGINSN-------NLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN 127 (510)
T ss_dssp CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTCS-SCCCHHHHHHTTHHHHHHHHTTCT--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCC-CCchHHHHHHCCCHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 478888888876 8999999999999987753 333457788999999999999875 467899999999999
Q ss_pred hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----H
Q 010533 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D 276 (508)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-----~ 276 (508)
++.+. +.+..+++.|++|.|+++|. +++.++++.++|+|++++.+++.+|..+.+.|++++|+.+|..++. .
T Consensus 128 ias~~~e~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 128 IASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH
Confidence 98765 55688999999999999997 4689999999999999999899999999999999999999987543 5
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCC
Q 010533 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGG 355 (508)
Q Consensus 277 ~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Gg 355 (508)
++++++|+|.+++.+.++...+ ....|+++.|+.+|.+. +++++.++||+|++|+.. ++....+++.|+
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~---------~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 275 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPL---------DAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV 275 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCH---------HHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhcccchhHH---------HHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhccc
Confidence 7889999999999877654321 12347899999999864 678999999999999985 456678889999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
++.|+.+|... +..++..++.+|++|+ +++.++..+++.|+++.|+.+|. +.++.+++.|||+|.||+.++++
T Consensus 276 i~~Lv~lL~~~----~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~v~~~A~~aL~nl~a~~~~ 349 (510)
T 3ul1_B 276 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD 349 (510)
T ss_dssp HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTT--CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred chhhhhhhcCC----ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhc--CCCHHHHHHHHHHHHHHHcCcHH
Confidence 99999999863 3489999999999996 57788999999999999999998 67899999999999999999999
Q ss_pred hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-cCccchHHHHhccc
Q 010533 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENSFCSVMVSR 488 (508)
Q Consensus 435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~-~~~e~~~~~~~~g~ 488 (508)
+...+.+.|+++.|+++|+. .+..++++|+|+|+|++. .+++++.++++.|.
T Consensus 350 ~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~ 402 (510)
T 3ul1_B 350 QIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGI 402 (510)
T ss_dssp HHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCC
Confidence 99999999999999999975 468999999999999987 47888899998884
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=320.53 Aligned_cols=339 Identities=16% Similarity=0.137 Sum_probs=264.5
Q ss_pred HHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccC---------CCHH
Q 010533 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC---------GSKR 191 (508)
Q Consensus 121 ~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~---------~~~~ 191 (508)
.+.+..|.+.+.+. |.++ ..+.|-.++. +++.|..++++|+||.||++|+..+. ++++
T Consensus 31 ~~~~~~l~~~~~~~-------~~~~---~~~~ll~~~~---~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~ 97 (458)
T 3nmz_A 31 VEMVYSLLSMLGTH-------DKDD---MSRTLLAMSS---SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE 97 (458)
T ss_dssp ---------------------CCHH---HHHHHHHHHS---STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred HHHHHHHHHHhcCC-------CHHH---HHHHHHHHHc---CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence 35566677766554 5553 5556666665 57799999999999999999997543 4579
Q ss_pred HHHHHHHHHHHhhcCCcch-hHHHhcCCh----------HHHHHHHhcCCCCH------------HHHHHHHHHHHHhhc
Q 010533 192 VLDSCLKTMALLVHDVQST-ETFRTGGGP----------KLLVNILIDGNEDP------------EILNSGFAVVAASAT 248 (508)
Q Consensus 192 ~~~~al~aLa~l~~~~~~~-~~i~~~ggi----------~~Lv~lL~~~~~~~------------~v~~~a~~~L~~l~~ 248 (508)
++.+|.|+|++++.+++.. ...++.|.+ +.++++|...+.+. ..+++|+|+|.++ +
T Consensus 98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl-s 176 (458)
T 3nmz_A 98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL-S 176 (458)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh-c
Confidence 9999999999999887543 444455555 55677776543111 2234999999999 5
Q ss_pred CChhhHHHHHHcCcHHHHHHHHhcC-----------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-CCHHH
Q 010533 249 GNEVVKESYMELKIDELILEILSRQ-----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARA 316 (508)
Q Consensus 249 ~~e~nr~~i~~~G~i~~Lv~lL~~~-----------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g~i~~ 316 (508)
.+++||+.+++.|++++|+.+|... +..++++|+|+|.+|+.+++. +...+.+. |+||+
T Consensus 177 ~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~---------~k~~i~~~~GaIp~ 247 (458)
T 3nmz_A 177 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---------NKATLCSMKGCMRA 247 (458)
T ss_dssp TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc---------cHHHHHHcCCcHHH
Confidence 5699999999999999999999531 126789999999999987742 23345444 56999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHH
Q 010533 317 LVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKS 393 (508)
Q Consensus 317 Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~ 393 (508)
|+.+|++. +++++..++|+|++|+.. ++++..|++.|||+.|+++|..+. +..+++.++.+|++|+. +++++.
T Consensus 248 LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 248 LVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHccCCHHHHH
Confidence 99999964 688999999999999984 678899999999999999875432 34899999999999998 889999
Q ss_pred HHH-hCCcHHHHHHHHhccCCCH--HHHHHHHHHHHHHhc---CChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHH
Q 010533 394 AII-ENGGMDKLIVVSARFSDDA--SVLQEVMSIITVLSL---RSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF 467 (508)
Q Consensus 394 ~Iv-~~Ggl~~Lv~lL~~~~~~~--~v~e~a~~aL~~La~---~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~ 467 (508)
.|+ ..|++|.|+++|....+.. .++++|+++|+||+. +++++++.+++.|+++.|+++|+. .+..++++|||
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~ 401 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACG 401 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHH
Confidence 998 7899999999998432221 599999999999997 799999999999999999999965 45789999999
Q ss_pred HHHHhhhcCccchHHHHhccc
Q 010533 468 MIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 468 aL~nL~~~~~e~~~~~~~~g~ 488 (508)
+|+||+.++++++..++++|+
T Consensus 402 aL~nLa~~~~~~~~~i~~~G~ 422 (458)
T 3nmz_A 402 TLWNLSARNPKDQEALWDMGA 422 (458)
T ss_dssp HHHHHHSSCHHHHHHHHHHTH
T ss_pred HHHHHHcCCHHHHHHHHHCCC
Confidence 999999889999999999985
No 4
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.4e-34 Score=312.79 Aligned_cols=336 Identities=12% Similarity=0.147 Sum_probs=289.6
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
.++.+...+.+. |.+.+.+++..+|++.+.+ ..+....+++.|+||.||.+|+.. ++.+++..|+++|++
T Consensus 77 ~l~~lv~~l~s~-------d~~~q~~a~~~~rklLs~~-~~~~i~~ii~~G~ip~Lv~lL~~~--~~~~~q~~Aa~aL~n 146 (529)
T 3tpo_A 77 SVEDIVKGINSN-------NLESQLQATQAARKLLSRE-KQPPIDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN 146 (529)
T ss_dssp CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTSS-SCCCHHHHHHTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-------CHHHHHHHHHHHHHHHcCC-CCchHHHHHHCCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 366777777776 8999999999999976542 344567889999999999999875 468899999999999
Q ss_pred hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-----H
Q 010533 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D 276 (508)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-----~ 276 (508)
++.+. +.+..+++.|++|.|+.+|. +++.++++.|+|+|++++..++.+|..+++.|++++|+.+|..+.. .
T Consensus 147 ia~~~~~~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~ 224 (529)
T 3tpo_A 147 IASGTSEQTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 224 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHH
Confidence 98765 44578999999999999997 4589999999999999999999999999999999999999987543 5
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCC
Q 010533 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGG 355 (508)
Q Consensus 277 ~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Gg 355 (508)
++++++|+|.+++.+.++...+ ....|++|.|+.+|.+. +++++.++||+|++|+.. ++....+++.|+
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~---------~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~ 294 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPL---------DAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV 294 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCH---------HHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcccchhhH---------HHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccc
Confidence 7889999999999877554321 12347899999999864 688999999999999984 566778889999
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE 434 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~ 434 (508)
++.|+.+|.+. +..++..++.+|++|+ +++..+..+++.|+++.|+.+|. +.++.+++.|||+|+||+.++++
T Consensus 295 i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 295 VPQLVKLLGAT----ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp HHHHHHHHTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHH
T ss_pred hHHHHHHhcCC----ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHH
Confidence 99999999853 3489999999999997 47788999999999999999998 67899999999999999999999
Q ss_pred hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh-cCccchHHHHhccc
Q 010533 435 NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA-RNPENSFCSVMVSR 488 (508)
Q Consensus 435 ~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~-~~~e~~~~~~~~g~ 488 (508)
+...+++.|+++.|+.+|.. ++..+++.|||+|.|++. .+++++.++++.|.
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~ 421 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSK--ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHHHHHhcCcHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence 99999999999999999975 468999999999999987 47889999999884
No 5
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-34 Score=320.55 Aligned_cols=438 Identities=11% Similarity=0.097 Sum_probs=327.7
Q ss_pred cCCchhhhhhhhhhccc-CCCCC--------CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhcCC
Q 010533 12 FSNSEQIDFQKQSSLIT-LPQPR--------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGM 82 (508)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~~m 82 (508)
.+++.+.-+.+.+.|+. .|-|| ..|+||.+++.+... +...|..+.+ -+..-.-+..++..+-+.+.
T Consensus 257 ~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~-~~~~q~~A~~---al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 257 LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD-DELQQRVACE---CLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp SSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSS-CHHHHHHHHH---HHHHHTTSHHHHHTTHHHHH
T ss_pred ccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCC-CHHHHHHHHH---HHHHHcCCcHHHHHHHHcCc
Confidence 45666777777777766 34455 669999999888654 3333333221 11111222223333222211
Q ss_pred --------ChhHHHHHHHHHHhhccccCCCcccc---CCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHH
Q 010533 83 --------EPTEALQDAIQTLSLQGVDLSGIVKC---VPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFD 151 (508)
Q Consensus 83 --------~p~eal~~aI~q~~~qgvdLs~i~~~---~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~ 151 (508)
+.+.. |+.|..- .|.++... .+.....+...+...++.++..+.+.. .|.+....+++
T Consensus 333 ~~L~~Ll~s~~~~----vr~~Al~--~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~-----~d~~v~~~Ave 401 (810)
T 3now_A 333 DILKRLYHSKNDG----IRVRALV--GLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG-----KDKDIRRWAAD 401 (810)
T ss_dssp HHHHHHTTCSCHH----HHHHHHH--HHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS-----CCSSHHHHHHH
T ss_pred HHHHHHHcCCCHH----HHHHHHH--HHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC-----CCHHHHHHHHH
Confidence 12211 1222111 12222111 111111122334556777888777631 15778899999
Q ss_pred HHHHHhCCCCChhhHHHHH-HCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc---------------------
Q 010533 152 KLIELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--------------------- 209 (508)
Q Consensus 152 ~L~~lc~~~~~~~~r~~i~-~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~--------------------- 209 (508)
.|..++. ++..|..++ +.|++|.||.+|++ ++..++..|+++|.+++.+.+.
T Consensus 402 aLayLS~---~~~vk~~lv~d~g~Ip~LV~LL~s---~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~ 475 (810)
T 3now_A 402 GLAYLTL---DAECKEKLIEDKASIHALMDLARG---GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE 475 (810)
T ss_dssp HHHHHTT---SHHHHHHHHHCHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS
T ss_pred HHHHHhC---CcHHHHHHHHccchHHHHHHHhCC---CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc
Confidence 9999998 455555555 58999999999997 4788999999999999975421
Q ss_pred ---------h---hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHH
Q 010533 210 ---------T---ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS 277 (508)
Q Consensus 210 ---------~---~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~ 277 (508)
+ ..+++.|++|.|+.+|++ +++.+++.++|+|++++. ++++|..+++.|++++|+.+|++++...
T Consensus 476 ~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~ 552 (810)
T 3now_A 476 HELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKG 552 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred cccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHH
Confidence 1 567889999999999984 579999999999999974 6779999999999999999999988788
Q ss_pred HHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCH
Q 010533 278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGI 356 (508)
Q Consensus 278 ~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi 356 (508)
+++|+|+|.+|+...++...|+. .. ..|++++|+++|....+.....+++++|.||+.. +++++.|++.||+
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~-----~~--~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l 625 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSG-----QR--SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTT-----HH--HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcc-----hh--hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCH
Confidence 99999999999976555443321 01 1369999999997543334457899999999985 6889999999999
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHh-CCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh
Q 010533 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE-NGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN 435 (508)
Q Consensus 357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~-~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~ 435 (508)
+.|+.+|.+.. ..++++|+++|+||+.+++.+..+++ .|+++.|+.++. +.+..+++.|||+|++|+.+++++
T Consensus 626 ~~Lv~LL~s~~----~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~--s~d~~vq~~Aa~ALanLt~~s~~~ 699 (810)
T 3now_A 626 SKIEYYLMEDH----LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE--DEDEETATACAGALAIITSVSVKC 699 (810)
T ss_dssp HHHHHHHHSCC----TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCC----HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCCHHH
Confidence 99999998642 27999999999999998888888885 789999999998 678999999999999999888999
Q ss_pred HHHHHh-cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533 436 AARAME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 436 ~~~i~~-~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
++.+++ .|+++.|+++|.. ++..+|+.|+|+|.|++..++++...+++.|+
T Consensus 700 ~~~ii~~~g~I~~Lv~LL~s--~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~ 751 (810)
T 3now_A 700 CEKILAIASWLDILHTLIAN--PSPAVQHRGIVIILNMINAGEEIAKKLFETDI 751 (810)
T ss_dssp HHHHHTSTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTH
T ss_pred HHHHHHHcCCHHHHHHHHCC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence 999999 8999999999963 67899999999999999888999999999985
No 6
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.3e-34 Score=310.07 Aligned_cols=353 Identities=12% Similarity=0.078 Sum_probs=285.9
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
+|..|...|.+. +.+.+..|++.|++++.. .++++|..+++.|+||.|+.+|++. .+.+++..+.++|.+
T Consensus 91 ~Ip~LV~LL~s~-------~~~vq~~Aa~AL~nLa~~-~~~~nk~~I~~~GaIp~LV~LL~s~--~~~~~~e~aa~aL~n 160 (584)
T 3l6x_A 91 GIPVLVGLLDHP-------KKEVHLGACGALKNISFG-RDQDNKIAIKNCDGVPALVRLLRKA--RDMDLTEVITGTLWN 160 (584)
T ss_dssp HHHHHHHGGGCS-------SHHHHHHHHHHHHHHTSS-SCHHHHHHHHHTTHHHHHHHHHHHC--CSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCC-------CHHHHHHHHHHHHHHHcc-CCHHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 578899998876 789999999999999973 1589999999999999999999975 367788888888888
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHh----------------cCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHH
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILI----------------DGNEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDEL 265 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~----------------~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~ 265 (508)
|+...+.+..++. +|++.|+++|. ++..+.++++.++++|++++..++++|+.+++. |+++.
T Consensus 161 LS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~ 239 (584)
T 3l6x_A 161 LSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDA 239 (584)
T ss_dssp HTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHH
T ss_pred HhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHH
Confidence 8876677888885 68999999872 123468999999999999998888889999986 56789
Q ss_pred HHHHHhc------CChHHHHHHHHHHHHhcCCCcchhh----h------------hhcchHHHHHHhcCCHHHHHHHHhc
Q 010533 266 ILEILSR------QRNDSIQSLYDAIRVLLTPDDDQVV----A------------SQVYGYARRFAKIGIARALVHSLHA 323 (508)
Q Consensus 266 Lv~lL~~------~~~~~~~~A~~aL~~L~~~dd~r~~----~------------~~a~~~~~~i~~~g~i~~Lv~lL~~ 323 (508)
|+.+|++ .+...+++++|+|+||+..-+..++ + .....-...+.+.++++.|+.+|+.
T Consensus 240 LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 240 LIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp HHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 9999985 2347899999999999965211110 0 0001111222334567889999987
Q ss_pred CCChhHHHHHHHHHHHhhcCh-----hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhC
Q 010533 324 GLSSPSLISASIALKAVAVND-----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIEN 398 (508)
Q Consensus 324 ~~d~~~~~~a~~aL~~La~~~-----e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~ 398 (508)
+.++.+++++++||++|+..+ .+...|.+.||++.|+++|... +..+++.++++|+||+.++.++..| +.
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~----~~~v~~~A~~aL~nLs~~~~~~~~I-~~ 394 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE----HERVVKAASGALRNLAVDARNKELI-GK 394 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhCChhHHHHH-Hh
Confidence 667889999999999998643 3334566789999999999863 2489999999999999988898876 67
Q ss_pred CcHHHHHHHHhccCC------CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 399 GGMDKLIVVSARFSD------DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 399 Ggl~~Lv~lL~~~~~------~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
|++|.||++|..... +..++..+|++|.||+.+++++++.|++.|+++.|+++++.++..+.+++.|||+|+||
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 999999999973211 46889999999999999999999999999999999999987545789999999999999
Q ss_pred hhcCccchHHHHhccccccH
Q 010533 473 VARNPENSFCSVMVSRNLSD 492 (508)
Q Consensus 473 ~~~~~e~~~~~~~~g~~~~~ 492 (508)
.. +.+++..|-++|...++
T Consensus 475 ~~-~~elr~~~kk~G~~~~~ 493 (584)
T 3l6x_A 475 WG-YKELRKPLEKEGWKKSD 493 (584)
T ss_dssp HT-SHHHHHHHHTTTCCGGG
T ss_pred Hc-CHHHHHHHHHcCCCHHH
Confidence 86 69999999999965443
No 7
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=2.9e-34 Score=294.79 Aligned_cols=280 Identities=14% Similarity=0.177 Sum_probs=241.6
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYME 259 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~ 259 (508)
....++.|+++|..++.+.+.|..+++.||++.|+.+|... ..+..++..|+++|.++|..++.+|..+..
T Consensus 45 ~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44667789999999998878899999999999999999521 124679999999999999888889988875
Q ss_pred c-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010533 260 L-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (508)
Q Consensus 260 ~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~ 338 (508)
. |+||.|+.+|++++.++++.|+|+|++|+..++. ++...+++.|+|++|+++|.+..+..+++.++++|+
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~--------~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~ 196 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV--------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALW 196 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH--------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH--------HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 5 5599999999988889999999999999975321 244567799999999998765556789999999999
Q ss_pred Hhhc-ChhhHhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh----CCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 339 AVAV-NDEICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA----GSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 339 ~La~-~~e~~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La----~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
+|+. .++++..|+ +.|+++.|+++|....+..+.++++.++++|++|+ ++++++..|++.|++|.|+++|+ +
T Consensus 197 nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~ 274 (354)
T 3nmw_A 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--S 274 (354)
T ss_dssp HHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--C
T ss_pred HHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--C
Confidence 9999 778888888 79999999999986433211258999999999998 48999999999999999999998 6
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533 413 DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
++..++++|+++|+||+.+++++++.+++.|+++.|+++|+. .+..+++.|+|+|+||+.++|+..
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--KHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 788999999999999998899999999999999999999954 578899999999999999877754
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.6e-33 Score=301.75 Aligned_cols=393 Identities=14% Similarity=0.159 Sum_probs=316.2
Q ss_pred hccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhc
Q 010533 10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDL 80 (508)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~ 80 (508)
.-+|++++.|++++++ ||++++|| ..|.||.+|+||++.|++.+|++++.+=.-|.-.
T Consensus 65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~------------- 131 (510)
T 3ul1_B 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG------------- 131 (510)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-------------
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-------------
Confidence 4589999999999998 89999999 8899999999999999988888765322211100
Q ss_pred CCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010533 81 GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN 160 (508)
Q Consensus 81 ~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~ 160 (508)
+.-.+.+| -.. +++..|...+.+. +.+....|++.|.+++..
T Consensus 132 ----~~e~~~~v---v~~-----------------------GaIp~Lv~lL~s~-------~~~v~e~A~~aL~nLa~d- 173 (510)
T 3ul1_B 132 ----TSEQTKAV---VDG-----------------------GAIPAFISLLASP-------HAHISEQAVWALGNIAGD- 173 (510)
T ss_dssp ----CHHHHHHH---HHT-----------------------THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT-
T ss_pred ----CHHHHHHH---HHC-----------------------CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhC-
Confidence 01112222 011 2467778887765 788889999999999987
Q ss_pred CChhhHHHHHHCCcHHHHHHHHhcccC--CCHHHHHHHHHHHHHhhcCCcchhHH-HhcCChHHHHHHHhcCCCCHHHHH
Q 010533 161 EGSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILN 237 (508)
Q Consensus 161 ~~~~~r~~i~~~Gavp~Lv~lL~~~~~--~~~~~~~~al~aLa~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~ 237 (508)
++.+|..+.+.|++|.|+.+|.+.+. ....++..+.+++++++.+......+ ...++++.|+++|. +++.+++.
T Consensus 174 -~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~ 250 (510)
T 3ul1_B 174 -GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLA 250 (510)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--CSCHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--cCCHHHHH
Confidence 89999999999999999999986531 12356778899999998766444444 34678999999997 46889999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHH
Q 010533 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL 317 (508)
Q Consensus 238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~L 317 (508)
.++++|++++..+++.++.+++.|+++.|+.+|.+.+..++..++++|.+|+..++ ++...+.+.|+++.|
T Consensus 251 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---------~~~~~i~~~g~l~~L 321 (510)
T 3ul1_B 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---------EQTQKVIDAGALAVF 321 (510)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTGGGGC
T ss_pred HHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH---------HHHHHHhhccchHHH
Confidence 99999999988887778888899999999999998887899999999999987664 245567789999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHH
Q 010533 318 VHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSA 394 (508)
Q Consensus 318 v~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~ 394 (508)
+.+|++. +..++..+||+|++|+. +.+.+..+.+.|+++.|+.+|.+. +.+++++|+++|+||+ ++++....
T Consensus 322 ~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 322 PSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp C-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 9999864 67899999999999987 567788899999999999999863 3489999999999997 36678888
Q ss_pred HHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-----CC-hhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533 395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-----RS-PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-----~~-~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a 468 (508)
+++.|++++|+++|. +.++.++..++.+|.+|.. ++ ...+..+.+.||++.|-. |+.|+ +..+.+.|...
T Consensus 397 L~~~g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~-Lq~~~-n~~i~~~A~~i 472 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA-LQRHE-NESVYKASLNL 472 (510)
T ss_dssp HHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHH-GGGCS-SHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHH-HHcCC-CHHHHHHHHHH
Confidence 999999999999998 7789999999999999873 12 233556778899988754 55674 57888888888
Q ss_pred HHHhhh
Q 010533 469 IRNLVA 474 (508)
Q Consensus 469 L~nL~~ 474 (508)
|-..-.
T Consensus 473 ie~yf~ 478 (510)
T 3ul1_B 473 IEKYFS 478 (510)
T ss_dssp HHHHCC
T ss_pred HHHHCC
Confidence 876543
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=6.6e-33 Score=299.88 Aligned_cols=335 Identities=10% Similarity=0.082 Sum_probs=272.7
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
.+..|...|.+. +.+.+..|++.|+++|.. +.++|..+.+.|+||.||++|++ ++.+++..|+++|.+
T Consensus 49 ~i~~LV~~L~s~-------~~~~q~~Aa~~L~~La~~--~~~~k~~V~~~G~Ip~LV~LL~s---~~~~vq~~Aa~AL~n 116 (584)
T 3l6x_A 49 ELPEVIAMLGFR-------LDAVKSNAAAYLQHLCYR--NDKVKTDVRKLKGIPVLVGLLDH---PKKEVHLGACGALKN 116 (584)
T ss_dssp CHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHGGGC---SSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCcHHHHHHHCC---CCHHHHHHHHHHHHH
Confidence 377788888775 788889999999999987 89999999999999999999998 478999999999999
Q ss_pred hhcC--CcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh---------
Q 010533 203 LVHD--VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------- 271 (508)
Q Consensus 203 l~~~--~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~--------- 271 (508)
|+.+ .+++..+++.|||+.||++|.+. .+.++++.++++|++++. ++.+|..|++ |+++.|+++|.
T Consensus 117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 117 ISFGRDQDNKIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HTSSSCHHHHHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC--
T ss_pred HHccCCHHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccc
Confidence 9874 57789999999999999999863 468899999999999975 7889999996 57999999872
Q ss_pred --------c-CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-CCHHHHHHHHhcC-----CChhHHHHHHHH
Q 010533 272 --------R-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIA 336 (508)
Q Consensus 272 --------~-~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g~i~~Lv~lL~~~-----~d~~~~~~a~~a 336 (508)
. .+..++.+|+++|+||+.+++ ++.+.|++. |++++|+.+|++. .+...+++++++
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~---------~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a 264 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERS---------EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL 264 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCH---------HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCH---------HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence 1 123789999999999997653 234556665 5568999999853 345688999999
Q ss_pred HHHhhcChhh--------------------------HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc-
Q 010533 337 LKAVAVNDEI--------------------------CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD- 389 (508)
Q Consensus 337 L~~La~~~e~--------------------------~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~- 389 (508)
|+||+..-+. ...+.+.++++.|+.+|..+. +..++++|+++|++|+.+.
T Consensus 265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~---~~~v~E~Aa~AL~nL~ag~~ 341 (584)
T 3l6x_A 265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK---TPAILEASAGAIQNLCAGRW 341 (584)
T ss_dssp HHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHSSCS
T ss_pred HHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCC---CHHHHHHHHHHHHHHHcCCc
Confidence 9999975211 112223345667889997642 3589999999999996432
Q ss_pred ----hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC------cH
Q 010533 390 ----SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN------AQ 459 (508)
Q Consensus 390 ----~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~------~~ 459 (508)
.++..|.+.||+|.|+++|. ++++.+++.||++|.||+. ++.++..| +.|+++.||++|..... ..
T Consensus 342 ~~~~~~~~~v~~~~glp~Lv~LL~--s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 342 TYGRYIRSALRQEKALSAIADLLT--NEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cccHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchH
Confidence 34455667899999999998 6789999999999999995 67777665 78999999999964321 35
Q ss_pred HHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533 460 QLQRSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 460 ~vq~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
.++..||++|.|++.+++++++.+++.|+
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~ 446 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQG 446 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 78889999999999999999999999985
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.6e-32 Score=291.73 Aligned_cols=333 Identities=13% Similarity=0.136 Sum_probs=271.8
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
++.|...+.+. +.+.+..|++.|+++|.. ++.++..+.+.|+||.||.+|++ ++.+++..|+++|.++
T Consensus 4 l~~lv~~L~s~-------~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 4 IPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNL 71 (457)
T ss_dssp HHHHHHHHHSS-------CTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence 56677777775 788899999999999986 77788899999999999999997 4788999999999999
Q ss_pred hcC-CcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh--------cC-
Q 010533 204 VHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------RQ- 273 (508)
Q Consensus 204 ~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~--------~~- 273 (508)
+.+ .+.+..+++.||+|.|+++|.. +.+.++++.++|+|++++.. +.+|..+++ |+++.|+.+|. +.
T Consensus 72 a~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence 876 5678889999999999999973 34789999999999999876 789999999 99999999993 22
Q ss_pred -------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc-CCHHHHHHHHhcC-----CChhHHHHHHHHHHHh
Q 010533 274 -------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLHAG-----LSSPSLISASIALKAV 340 (508)
Q Consensus 274 -------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~-g~i~~Lv~lL~~~-----~d~~~~~~a~~aL~~L 340 (508)
+..++++|+|+|+||+.++ ++.+.+.+. |++++|+.+|+++ .+..++.+++++|++|
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~----------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSAD----------AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSH----------HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred chhcccccHHHHHHHHHHHHHHccCH----------HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 2257779999999999652 344566687 9999999999862 2445778888889988
Q ss_pred hcC---------------------------------------------------hhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533 341 AVN---------------------------------------------------DEICKSVAENGGIDALLRCIDDSGLQ 369 (508)
Q Consensus 341 a~~---------------------------------------------------~e~~~~i~e~Ggi~~Lv~lL~~~~~~ 369 (508)
+.. ++..+.+.+.|+++.|+.+|....
T Consensus 219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-- 296 (457)
T 1xm9_A 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-- 296 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC--
T ss_pred ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC--
Confidence 631 112245667888999999998742
Q ss_pred CcHHHHHHHHHHHHHhhC-Cch----h-HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 010533 370 GNKTVARICCSLLSKLAG-SDS----N-KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG 443 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~-~~~----~-k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G 443 (508)
+..+++.|+++|.||+. +.. . +..|.+.||+|.|+++|. +++..+++.|+++|.+|+. ++++...| ..|
T Consensus 297 -~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~--~~~~~v~~~A~~aL~nls~-~~~~~~~i-~~~ 371 (457)
T 1xm9_A 297 -KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSR-HPLLHRVM-GNQ 371 (457)
T ss_dssp -CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHT-SGGGHHHH-HHH
T ss_pred -CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh--CCCHhHHHHHHHHHHHHhc-CHHHHHHH-HHh
Confidence 34899999999999975 332 2 233446899999999998 6789999999999999995 67776655 568
Q ss_pred cHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533 444 SGDLAIQAMLKFPN----AQQLQRSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 444 ~i~~Lv~~L~~h~~----~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
+++.|+++|..... +..++..++++|.|++.+++++...+.+.|+
T Consensus 372 ~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~ 420 (457)
T 1xm9_A 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHH
T ss_pred hhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 99999999975322 2468889999999999999999999998885
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.8e-32 Score=294.86 Aligned_cols=392 Identities=14% Similarity=0.153 Sum_probs=315.9
Q ss_pred hccCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhc
Q 010533 10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDL 80 (508)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~ 80 (508)
.-+|++++.|+++++. ||++++|| ..|+||.+|.||.+.+++.+|++++.+-.-|+..+-
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~----------- 152 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS----------- 152 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-----------
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-----------
Confidence 4589999999999998 79999999 789999999999999998888875532222211000
Q ss_pred CCChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC
Q 010533 81 GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN 160 (508)
Q Consensus 81 ~m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~ 160 (508)
-...+| -.. +++..|...+.+. +.+....|++.|.+++..
T Consensus 153 ------~~~~~v---v~~-----------------------Gaip~Lv~LL~s~-------~~~v~e~A~~aL~nLa~~- 192 (529)
T 3tpo_A 153 ------EQTKAV---VDG-----------------------GAIPAFISLLASP-------HAHISEQAVWALGNIAGA- 192 (529)
T ss_dssp ------HHHHHH---HHT-----------------------THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT-
T ss_pred ------HHHHHH---HHC-----------------------CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcc-
Confidence 011122 111 2467778877775 788889999999999987
Q ss_pred CChhhHHHHHHCCcHHHHHHHHhcccC--CCHHHHHHHHHHHHHhhcCCcchhHH-HhcCChHHHHHHHhcCCCCHHHHH
Q 010533 161 EGSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETF-RTGGGPKLLVNILIDGNEDPEILN 237 (508)
Q Consensus 161 ~~~~~r~~i~~~Gavp~Lv~lL~~~~~--~~~~~~~~al~aLa~l~~~~~~~~~i-~~~ggi~~Lv~lL~~~~~~~~v~~ 237 (508)
++.+|..+.+.|++|.|+.+|...+. ....++..+.++|+.++.+..+...+ ...+++|.|+++|. +++.+++.
T Consensus 193 -~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~ 269 (529)
T 3tpo_A 193 -GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLA 269 (529)
T ss_dssp -CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT--SSCHHHHH
T ss_pred -CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc--CCcHHHHH
Confidence 89999999999999999999986431 12356778899999998765444443 44688999999997 46899999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHH
Q 010533 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL 317 (508)
Q Consensus 238 ~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~L 317 (508)
.++|+|++++..+++.++.+++.|+++.|+.+|.+.+..++..++++|.+|+..++ ++...+.+.|+++.|
T Consensus 270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~---------~~~~~i~~~g~l~~L 340 (529)
T 3tpo_A 270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---------EQTQKVIDAGALAVF 340 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTGGGGH
T ss_pred HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch---------HHHHHHhhcccHHHH
Confidence 99999999998888888888999999999999998887899999999999987654 244567789999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHH
Q 010533 318 VHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSA 394 (508)
Q Consensus 318 v~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~ 394 (508)
+.+|++. ++.++..+||+|++|+. +++.+..+.+.|+++.|+.+|.+. +.+++.+|+++|+||+ ++++....
T Consensus 341 ~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL~nl~~~~~~~~~~~ 415 (529)
T 3tpo_A 341 PSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKAAAWAITNYTSGGTVEQIVY 415 (529)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC----CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999864 67899999999999997 567788899999999999999864 3489999999999997 36678888
Q ss_pred HHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc-----CC-hhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533 395 IIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL-----RS-PENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 395 Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~-----~~-~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a 468 (508)
+++.|++++|+++|. +.++.++..++.+|.+|.. ++ +..+..+.+.||++.|-.+ ..|. +..|.+.|...
T Consensus 416 l~~~g~i~~L~~LL~--~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~-n~~i~~~A~~i 491 (529)
T 3tpo_A 416 LVHCGIIEPLMNLLS--AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHE-NESVYKASLNL 491 (529)
T ss_dssp HHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCS-SHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCC-CHHHHHHHHHH
Confidence 999999999999998 7789999999999999863 22 2345567789999987554 5674 67888888888
Q ss_pred HHHhh
Q 010533 469 IRNLV 473 (508)
Q Consensus 469 L~nL~ 473 (508)
|-..-
T Consensus 492 ie~yf 496 (529)
T 3tpo_A 492 IEKYF 496 (529)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 86643
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.3e-30 Score=280.74 Aligned_cols=336 Identities=12% Similarity=0.096 Sum_probs=288.1
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
..+..|...+.+. |.+....|++.|+++++. ...+++..+.+.|++|.|+.+|++. ++.+++..|+++|.
T Consensus 74 ~~l~~lv~~L~s~-------~~~~~~~A~~~L~~l~s~-~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~v~~~A~~~L~ 143 (528)
T 4b8j_A 74 ESLPAMIGGVYSD-------DNNLQLEATTQFRKLLSI-ERSPPIEEVIQSGVVPRFVQFLTRE--DFPQLQFEAAWALT 143 (528)
T ss_dssp -CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTC-SSSCCHHHHHHTTCHHHHHHHHTCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC-CCCchHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 3477778887765 788899999999999775 1336777889999999999999874 24889999999999
Q ss_pred HhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc-CChHHHH
Q 010533 202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQ 279 (508)
Q Consensus 202 ~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~-~~~~~~~ 279 (508)
.++.+. +.+..+++.|+++.|+.+|.+ ++..++..++++|++++..++.+|..+.+.|+++.|+.+|.. .+..++.
T Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~ 221 (528)
T 4b8j_A 144 NIASGTSENTKVVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 221 (528)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHH
T ss_pred HHhCCCHHHHHHHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHH
Confidence 998864 556788899999999999985 589999999999999998889999999999999999999954 4558899
Q ss_pred HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-hhHhHHhhcCCHHH
Q 010533 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDA 358 (508)
Q Consensus 280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e~~~~i~e~Ggi~~ 358 (508)
+++|+|.+|+....... .....|+++.|+.+|.+. ++.++..++++|++|+..+ +..+.+++.|+++.
T Consensus 222 ~a~~~L~~L~~~~~~~~----------~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPS----------FEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp HHHHHHHHHHCSSSCCC----------HHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCCc----------HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 99999999997642211 233469999999999764 7889999999999999854 45678889999999
Q ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCC-CHHHHHHHHHHHHHHhcCChhhH
Q 010533 359 LLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSD-DASVLQEVMSIITVLSLRSPENA 436 (508)
Q Consensus 359 Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~-~~~v~e~a~~aL~~La~~~~~~~ 436 (508)
|+.+|.+. +..++..|+.+|++|+. ++.....+++.|+++.|+.+|. .. ++.+++.||++|.+|+.++++..
T Consensus 291 Lv~lL~~~----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~A~~~L~nl~~~~~~~~ 364 (528)
T 4b8j_A 291 LVELLLHP----SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT--QNLKKSIKKEACWTISNITAGNKDQI 364 (528)
T ss_dssp HHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCC----ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc--CCCcHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999864 34899999999999986 6778888999999999999998 55 89999999999999998899999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-CccchHHHHhccc
Q 010533 437 ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENSFCSVMVSR 488 (508)
Q Consensus 437 ~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~e~~~~~~~~g~ 488 (508)
..+++.|+++.|+++|... +..+++.|+|+|.|++.. +++++.++++.|.
T Consensus 365 ~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~ 415 (528)
T 4b8j_A 365 QAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 415 (528)
T ss_dssp HHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence 9999999999999999764 689999999999999986 7899999887763
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=1.8e-31 Score=283.66 Aligned_cols=339 Identities=12% Similarity=0.128 Sum_probs=273.1
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
+++..|...+.+. +.+.+..|++.|++++.. ++++|..+++.|+||.|+++|+.. ++.+++..|.++|.
T Consensus 44 g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLa~~--~~~~k~~i~~~G~i~~Lv~lL~~~--~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 44 GGICKLVDLLRSP-------NQNVQQAAAGALRNLVFR--STTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLW 112 (457)
T ss_dssp THHHHHHHHTTSS-------CHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHhhC--CCHHHHHHHHHHHH
Confidence 4788899998775 788899999999999986 799999999999999999999832 47899999999999
Q ss_pred HhhcCCcchhHHHhcCChHHHHHHHhc--------CC------CCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHH
Q 010533 202 LLVHDVQSTETFRTGGGPKLLVNILID--------GN------EDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELI 266 (508)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~--------~~------~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~L 266 (508)
+++.+.+.|..+++ |++|.|+++|.. .. .+.+++..++|+|+++|.. +++|+.+++. |+++.|
T Consensus 113 nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~L 190 (457)
T 1xm9_A 113 NLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSL 190 (457)
T ss_dssp HHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHH
T ss_pred HHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHH
Confidence 99987777888999 999999999931 11 3567888999999999876 8899999998 999999
Q ss_pred HHHHhc------CChHHHHHHHHHHHHhcCCCcchh----------------------hhhh------------------
Q 010533 267 LEILSR------QRNDSIQSLYDAIRVLLTPDDDQV----------------------VASQ------------------ 300 (508)
Q Consensus 267 v~lL~~------~~~~~~~~A~~aL~~L~~~dd~r~----------------------~~~~------------------ 300 (508)
+.+|++ .+..++.+++++|++|+..-+... -|+.
T Consensus 191 v~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (457)
T 1xm9_A 191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270 (457)
T ss_dssp HHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCC
T ss_pred HHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccc
Confidence 999986 234678889999999974210000 0000
Q ss_pred -cchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh-h----hHhH-HhhcCCHHHHHHHHhccCCCCcHH
Q 010533 301 -VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-E----ICKS-VAENGGIDALLRCIDDSGLQGNKT 373 (508)
Q Consensus 301 -a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~-e----~~~~-i~e~Ggi~~Lv~lL~~~~~~~~~~ 373 (508)
..+..+.+.+.|+++.|+.+|+...++.+++.++|+|++|+..+ . ..+. |.+.||++.|+++|.+. +.+
T Consensus 271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~----~~~ 346 (457)
T 1xm9_A 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG----NSD 346 (457)
T ss_dssp SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----CHH
T ss_pred cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC----CHh
Confidence 00112234456789999999998777889999999999999743 2 2133 44789999999999864 348
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 010533 374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI 449 (508)
Q Consensus 374 v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv 449 (508)
++++|+++|++|+.++.++..|. .|++|+|+++|..... ++.++..++++|.+|..++++++..+.+.||++.|+
T Consensus 347 v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 347 VVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH
Confidence 99999999999999888887765 5899999999983211 247889999999999989999999999999999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533 450 QAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 450 ~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
+++.. ..+..+.+.|+|.|.|+..+ .+.|
T Consensus 426 ~L~~~-~~~~~i~~~A~~~L~~~~~~-~~l~ 454 (457)
T 1xm9_A 426 NLCRS-SASPKAAEAARLLLSDMWSS-KELQ 454 (457)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTSSS-TTCS
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHHcc-hhhh
Confidence 99974 33678999999999999764 4444
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=9.9e-32 Score=275.95 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=235.9
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcc--------cCCCHHHHHHHHHHHHHhhcCCc-ch
Q 010533 140 DEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM--------RCGSKRVLDSCLKTMALLVHDVQ-ST 210 (508)
Q Consensus 140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~--------~~~~~~~~~~al~aLa~l~~~~~-~~ 210 (508)
..+...+.+|++.|.+++. ++++|..+.+.|++|.|+.+|.+. +..+.+++..|.++|.+++.+.+ .+
T Consensus 43 ~~~~~~~~~A~~aL~nls~---d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k 119 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANK 119 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred CcchHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456777899999999997 689999999999999999999632 00235789999999999997654 55
Q ss_pred hHHHhcCC-hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-ChhhHHHHHHcCcHHHHHHHHh-cCChHHHHHHHHHHHH
Q 010533 211 ETFRTGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILS-RQRNDSIQSLYDAIRV 287 (508)
Q Consensus 211 ~~i~~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~~ 287 (508)
..+...+| +|.|+++|. +++.++++.++++|++++.. ++.+|..+++.|+|+.|+++|. +++.++++.|+++|++
T Consensus 120 ~~i~~~~GaIp~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 120 ATLCSMKGCMRALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHC--CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 66666655 999999998 46899999999999999874 6789999999999999999864 4556888999999999
Q ss_pred hcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCCCh---hHHHHHHHHHHHhhc----ChhhHhHHhhcCCHHHH
Q 010533 288 LLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSS---PSLISASIALKAVAV----NDEICKSVAENGGIDAL 359 (508)
Q Consensus 288 L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~d~---~~~~~a~~aL~~La~----~~e~~~~i~e~Ggi~~L 359 (508)
|+...+ ++...|+ ..|+|++|+++|+...+. +++++++++|++|+. ++++++.+.+.|+++.|
T Consensus 198 Ls~~~~---------~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~L 268 (354)
T 3nmw_A 198 LSAHCT---------ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL 268 (354)
T ss_dssp HHTTCH---------HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHH
T ss_pred HHccCh---------hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHH
Confidence 997331 2334676 689999999999876543 589999999999995 88999999999999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAA 437 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~ 437 (508)
+.+|.+. +..++++|+++|++|+ ++++++..|++.|++|+|+++|+ ++++.+++.|+++|.+|+.++|+..+
T Consensus 269 v~lL~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~--s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 269 LQHLKSH----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHcCC----ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999863 3489999999999999 58899999999999999999998 77899999999999999988877543
No 15
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.98 E-value=5.5e-31 Score=293.78 Aligned_cols=335 Identities=12% Similarity=0.077 Sum_probs=267.5
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhccc---------------
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR--------------- 186 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~--------------- 186 (508)
++++.|...+.+. +...+..|++.|...|. ++.+|..+.+.|+ |.|+.++++.+
T Consensus 290 G~v~~li~Ll~s~-------~~~~q~~A~~al~~aa~---~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~ 358 (810)
T 3now_A 290 GILQMILAMATTD-------DELQQRVACECLIAASS---KKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLG 358 (810)
T ss_dssp THHHHHHHHHHSS-------CHHHHHHHHHHHHHHTT---SHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCC-------CHHHHHHHHHHHHHHcC---CcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 4677788877775 67777788888888776 5778888887764 77777764321
Q ss_pred ------C-------------------------CCHHHHHHHHHHHHHhhcCCcchhHHH-hcCChHHHHHHHhcCCCCHH
Q 010533 187 ------C-------------------------GSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPE 234 (508)
Q Consensus 187 ------~-------------------------~~~~~~~~al~aLa~l~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~ 234 (508)
. .|.+++.+|+++|++|+.+.+.+..++ +.|++|.||++|++ ++..
T Consensus 359 s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s--~d~~ 436 (810)
T 3now_A 359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARG--GNQS 436 (810)
T ss_dssp TTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHT--TCGG
T ss_pred cccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCC--CChH
Confidence 0 034456677777777776666666676 46899999999984 5789
Q ss_pred HHHHHHHHHHHhhcCCh-----------------------------hhH---HHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533 235 ILNSGFAVVAASATGNE-----------------------------VVK---ESYMELKIDELILEILSRQRNDSIQSLY 282 (508)
Q Consensus 235 v~~~a~~~L~~l~~~~e-----------------------------~nr---~~i~~~G~i~~Lv~lL~~~~~~~~~~A~ 282 (508)
++..++++|.|++...+ .++ +.++++|++|+|+.+|+++++.+++.|+
T Consensus 437 i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa 516 (810)
T 3now_A 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA 516 (810)
T ss_dssp GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999987542 234 6788999999999999998889999999
Q ss_pred HHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHH---hhcCCHHHH
Q 010533 283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSV---AENGGIDAL 359 (508)
Q Consensus 283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i---~e~Ggi~~L 359 (508)
|+|.||+.+++ +...+++.|++|+|+.+|+++ +...+..++|||++|+...+....+ ...|++++|
T Consensus 517 ~aL~NLA~d~~----------~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppL 585 (810)
T 3now_A 517 RVLNAVCGLKE----------LRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPL 585 (810)
T ss_dssp HHHHHHHTSHH----------HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHH
T ss_pred HHHHHHcCCHH----------HHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHH
Confidence 99999996543 345677999999999999986 4668999999999998632222211 124699999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~ 438 (508)
+.+|... . +.....+|+++|.||+.. ++++..|+++||++.|+.+|. ++++.+++.|+++|+||+. +++.+..
T Consensus 586 v~LL~~~--~-~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~Vq~~A~~~L~NLa~-~~~~~~~ 659 (810)
T 3now_A 586 LNLLQQD--C-TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLYLTRAAAQCLCNLVM-SEDVIKM 659 (810)
T ss_dssp HHTTSTT--S-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTTHHHHHHHHHHHHTT-SHHHHHH
T ss_pred HHHhCCC--C-cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhC-ChHHHHH
Confidence 9999742 1 123456899999999975 689999999999999999998 5678999999999999996 6778888
Q ss_pred HHh-cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHh-ccc
Q 010533 439 AME-AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVM-VSR 488 (508)
Q Consensus 439 i~~-~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~-~g~ 488 (508)
+++ .|+++.|+.++.. .+..+|+.|||+|.|++.+++++++.+++ +|+
T Consensus 660 ~v~~~g~l~~Lv~LL~s--~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~ 709 (810)
T 3now_A 660 FEGNNDRVKFLALLCED--EDEETATACAGALAIITSVSVKCCEKILAIASW 709 (810)
T ss_dssp HHSSSSHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred HHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 886 7899999999954 56899999999999999988999999998 553
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=3.7e-29 Score=269.78 Aligned_cols=334 Identities=12% Similarity=0.115 Sum_probs=286.0
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
+..|...+.+. +.+.+..|+..|++++..+ +.+++..+.+.|++|.|+.+|++. .+.+++..|+++|..+
T Consensus 89 i~~lv~~L~s~-------~~~~~~~A~~~L~~ll~~~-~~~~~~~~~~~g~i~~Lv~~L~~~--~~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 89 LPQMTQQLNSD-------DMQEQLSATVKFRQILSRE-HRPPIDVVIQAGVVPRLVEFMREN--QPEMLQLEAAWALTNI 158 (530)
T ss_dssp HHHHHHHHSCS-------SHHHHHHHHHHHHHHTCCS-SSCSHHHHHHTTCHHHHHHTTSTT--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCC-CCccHHHHHHCCCHHHHHHHhCCC--CCHHHHHHHHHHHHHH
Confidence 66677777665 7888999999999997651 345567788999999999999874 2688999999999999
Q ss_pred hcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHH
Q 010533 204 VHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY 282 (508)
Q Consensus 204 ~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~ 282 (508)
+.+. +.+..+++.|+++.|+.+|.+ .+.++++.++++|++++..++.++..++..|+++.|+.+|.+.+..++..++
T Consensus 159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 159 ASGTSAQTKVVVDADAVPLFIQLLYT--GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHH--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 8765 345778889999999999985 5899999999999999988889999999999999999999986668999999
Q ss_pred HHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHH
Q 010533 283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLR 361 (508)
Q Consensus 283 ~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~ 361 (508)
|+|.+|+.+++... ......|+++.|+.+|.+. ++.++..++++|++|+.. ++....+++.|+++.|+.
T Consensus 237 ~~L~~L~~~~~~~~---------~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~ 306 (530)
T 1wa5_B 237 WTLSNLCRGKKPQP---------DWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306 (530)
T ss_dssp HHHHHHHCCSSSCC---------CHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCCCCC---------cHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence 99999997653221 1233568999999999864 688999999999999974 567888999999999999
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 010533 362 CIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAM 440 (508)
Q Consensus 362 lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~ 440 (508)
+|.+. +..++..|+.+|++|+. ++.....+++.|+++.|+.+|. .+++.+++.|+++|.+|+.+++++...++
T Consensus 307 lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 380 (530)
T 1wa5_B 307 LLSHE----STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVI 380 (530)
T ss_dssp GGGCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHCCC----ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99853 35899999999999985 5677888899999999999998 55899999999999999988999999999
Q ss_pred hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-Cc--cchHHHHhcc
Q 010533 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NP--ENSFCSVMVS 487 (508)
Q Consensus 441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~--e~~~~~~~~g 487 (508)
+.|+++.|+++|.. .++.+++.|+|+|.|++.. ++ ++.+++++.|
T Consensus 381 ~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 381 DANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 99999999999975 4689999999999999875 45 7888888766
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=4.3e-29 Score=267.45 Aligned_cols=342 Identities=16% Similarity=0.138 Sum_probs=288.7
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~aL 200 (508)
.++..|...+.+. |......|+..|.+++. +.+++..+.. .|++|.|+++|++. .+.+++..|+.+|
T Consensus 17 ~~i~~Lv~lL~~~-------~~~v~~~A~~~L~~l~~---~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L 84 (529)
T 1jdh_A 17 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSK---KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL 84 (529)
T ss_dssp CHHHHHHHHHTCS-------CHHHHHHHHHHHHHHHT---SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCC-------CHHHHHHHHHHHHHHHc---CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHH
Confidence 4678888887765 78888999999999997 4567766665 49999999999864 3788999999999
Q ss_pred HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~ 280 (508)
..++.+.+.+..+.+.|+++.|+++|.+ +++.++..++++|++++..++.++..+++.|+++.|+++|++++..+...
T Consensus 85 ~~ls~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 85 HNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp HHHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHcCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9998776778889999999999999974 57999999999999999888888999999999999999999877778888
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv 360 (508)
++.+|.+|+..++ ++...+.+.|+++.|+.+|+++.+......++.+|++|+..++++..+++.|+++.|+
T Consensus 163 ~~~~L~~la~~~~---------~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 163 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 233 (529)
T ss_dssp HHHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCCH---------HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence 8899999987542 3456677889999999999987666677888999999999999999999999998888
Q ss_pred HHHhccC-----------------------------------CCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHH
Q 010533 361 RCIDDSG-----------------------------------LQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKL 404 (508)
Q Consensus 361 ~lL~~~~-----------------------------------~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~L 404 (508)
.++.+.. ...+.+++..++++|++|+.+ ++++..+.+.|+++.|
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L 313 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Confidence 7765421 123468889999999999864 5799999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533 405 IVVSARFSDDASVLQEVMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF 481 (508)
Q Consensus 405 v~lL~~~~~~~~v~e~a~~aL~~La~~~~~---~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~ 481 (508)
+++|..+.+++.+++.++++|.+|+.++++ .+..+++.|+++.|+++|+. +.+..+++.+||+|+|++. +++++.
T Consensus 314 ~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~~-~~~~~~ 391 (529)
T 1jdh_A 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHA 391 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc-ccchHHHHHHHHHHHHHhc-ChhhhH
Confidence 999986555689999999999999987655 46789999999999999964 4456899999999999986 567778
Q ss_pred HHHhccc
Q 010533 482 CSVMVSR 488 (508)
Q Consensus 482 ~~~~~g~ 488 (508)
.+++.|.
T Consensus 392 ~~~~~~~ 398 (529)
T 1jdh_A 392 PLREQGA 398 (529)
T ss_dssp HHHHTTH
T ss_pred HHHHcCC
Confidence 8888774
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=7.4e-29 Score=267.03 Aligned_cols=392 Identities=11% Similarity=0.121 Sum_probs=313.7
Q ss_pred ccCCchhhhhhhhhhc----ccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhcC
Q 010533 11 HFSNSEQIDFQKQSSL----ITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLG 81 (508)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~~ 81 (508)
-.|++++.|+.+.+.| +..++|| ..|+||..+.||...+++.+++.+..+-..|+.
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--------------- 147 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS--------------- 147 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT---------------
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---------------
Confidence 3577889999998884 6677677 679999999999877654444433221111111
Q ss_pred CChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCC
Q 010533 82 MEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNE 161 (508)
Q Consensus 82 m~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~ 161 (508)
...+ .+..+ -.. .++..|...+.+. +.+....+++.|.++|..
T Consensus 148 -~~~~-~~~~~---~~~-----------------------g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~~~-- 190 (528)
T 4b8j_A 148 -GTSE-NTKVV---IDH-----------------------GAVPIFVKLLGSS-------SDDVREQAVWALGNVAGD-- 190 (528)
T ss_dssp -SCHH-HHHHH---HHT-----------------------THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHHT--
T ss_pred -CCHH-HHHHH---HhC-----------------------CcHHHHHHHhcCC-------CHHHHHHHHHHHHHHhCC--
Confidence 0000 11111 111 2477777777665 678888999999999986
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHH
Q 010533 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFA 241 (508)
Q Consensus 162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~ 241 (508)
++.+|..+.+.|++|.|+.+|... .+..++..|+++|.+++.+.+........|+++.|+.+|. ..+.+++..+++
T Consensus 191 ~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~ 266 (528)
T 4b8j_A 191 SPKCRDLVLANGALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH--SNDEEVLTDACW 266 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred ChhhHHHHHHCCcHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 788999999999999999999543 4788999999999999987544555667899999999996 468999999999
Q ss_pred HHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH
Q 010533 242 VVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL 321 (508)
Q Consensus 242 ~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL 321 (508)
+|++++...+...+.+++.|+++.|+.+|.+.+..++..|+++|.+|+..++ +..+.+.+.|+++.|+.+|
T Consensus 267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD---------AQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH---------HHHHHHHHhhhHHHHHHHH
Confidence 9999988777777888899999999999998877899999999999997553 2345667889999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhC
Q 010533 322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIEN 398 (508)
Q Consensus 322 ~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~ 398 (508)
.+..++.++..+||+|++|+. +++....+++.|+++.|+.+|... +.+++..|+++|.+|+. +++....+++.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA----EFDIKKEAAWAISNATSGGSHDQIKYLVSE 413 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 975467899999999999997 566778899999999999999864 34899999999999974 57888999999
Q ss_pred CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-----------hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHH
Q 010533 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-----------NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCF 467 (508)
Q Consensus 399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~-----------~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~ 467 (508)
|+++.|+.+|. ..++.++..++.+|.+|+...+. .+..+.+.|+++.|..++ .| .++.+++.|.+
T Consensus 414 ~~i~~L~~lL~--~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~-~~~~v~~~a~~ 489 (528)
T 4b8j_A 414 GCIKPLCDLLI--CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ-SH-DNNEIYEKAVK 489 (528)
T ss_dssp TCHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG-GC-SSHHHHHHHHH
T ss_pred CCHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH-cC-CCHHHHHHHHH
Confidence 99999999998 67899999999999999853333 577788899999988865 45 46889999999
Q ss_pred HHHHhhhc
Q 010533 468 MIRNLVAR 475 (508)
Q Consensus 468 aL~nL~~~ 475 (508)
.|.++...
T Consensus 490 il~~~~~~ 497 (528)
T 4b8j_A 490 ILEAYWMD 497 (528)
T ss_dssp HHHHHCC-
T ss_pred HHHHHCCC
Confidence 99998653
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=3.8e-28 Score=254.57 Aligned_cols=334 Identities=11% Similarity=0.107 Sum_probs=278.4
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHC-CcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~-Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
+..|...+.+. |.+....|+..|++++....++.. ..+.+. |++|.|+.+|++. .+.+++..|+++|..
T Consensus 22 l~~l~~~l~s~-------~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~--~~~~v~~~a~~~L~~ 91 (450)
T 2jdq_A 22 TSDMIEMIFSK-------SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRK--ENCTLQFESAWVLTN 91 (450)
T ss_dssp CHHHHHHHHSS-------CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 55666666665 788889999999997642113333 345666 9999999999874 368899999999999
Q ss_pred hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc-CChHHHHH
Q 010533 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS 280 (508)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~-~~~~~~~~ 280 (508)
++.+. +.+..+++.|+++.|+++|.+ ++..+++.++++|++++..++.+|..+++.|+++.|+.+|.+ .+..++..
T Consensus 92 l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~ 169 (450)
T 2jdq_A 92 IASGNSLQTRIVIQAGAVPIFIELLSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169 (450)
T ss_dssp HHSSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHH
T ss_pred HhcCCHHHHHHHHhCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHH
Confidence 98754 445677889999999999984 589999999999999998888899999999999999999996 45589999
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~L 359 (508)
++|+|.+|+.+++.... ..++ .|+++.|+.+|++. ++.++..++++|++|+. .++....+.+.|+++.|
T Consensus 170 a~~~L~~l~~~~~~~~~--------~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 239 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPE--------FAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239 (450)
T ss_dssp HHHHHHHHHCCSSSCCC--------GGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHhCCCCCCCC--------HHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence 99999999976522111 0122 58999999999864 67899999999999998 45778888899999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAAR 438 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~ 438 (508)
+.+|.+. +..++..++.+|++|+.. +..+..+++.|+++.|+.+|. .+++.+++.|+++|.+|+.++++..+.
T Consensus 240 ~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~ 313 (450)
T 2jdq_A 240 VELLMHN----DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQT 313 (450)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHCCC----chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999742 358999999999999864 566777889999999999998 568999999999999999889999999
Q ss_pred HHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc-CccchHHHHhcc
Q 010533 439 AMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR-NPENSFCSVMVS 487 (508)
Q Consensus 439 i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~-~~e~~~~~~~~g 487 (508)
+++.|+++.|+++|+. .++.+++.|||+|.|++.+ +++..+.+++.|
T Consensus 314 ~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~ 361 (450)
T 2jdq_A 314 VIDANIFPALISILQT--AEFRTRKEAAWAITNATSGGSAEQIKYLVELG 361 (450)
T ss_dssp HHHTTHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC
Confidence 9999999999999975 4689999999999999976 678888887665
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=5e-28 Score=259.18 Aligned_cols=318 Identities=17% Similarity=0.191 Sum_probs=254.7
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
++..|...+.+. .+.+....++..|++++. +++++..+.+.|++|.|+++|++. +.+++..|+++|..
T Consensus 60 ~i~~Lv~~L~~~------~~~~~~~~a~~~L~~ls~---~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~ 127 (529)
T 1jdh_A 60 MVSAIVRTMQNT------NDVETARCTAGTLHNLSH---HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHN 127 (529)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcC------CCHHHHHHHHHHHHHHHc---CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 466676666532 157788899999999987 567999999999999999999884 68899999999999
Q ss_pred hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHH
Q 010533 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS 280 (508)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~ 280 (508)
++.+. +.+..+++.|+++.|+++|.+ ++.+++..++.+|.+++..+++++..+++.|+++.|+.+|++++. .....
T Consensus 128 l~~~~~~~~~~i~~~g~i~~L~~ll~~--~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~ 205 (529)
T 1jdh_A 128 LLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205 (529)
T ss_dssp HHHHCTTHHHHHHHHTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HhcCCcchHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHH
Confidence 98764 456778899999999999985 578899999999999998889999999999999999999998765 55667
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcC---------------------------------------CHHHHHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIG---------------------------------------IARALVHSL 321 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g---------------------------------------~i~~Lv~lL 321 (508)
++.+|.+|+..++++. .+.+.| +++.|+.+|
T Consensus 206 a~~~L~~l~~~~~~~~----------~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll 275 (529)
T 1jdh_A 206 TSRVLKVLSVCSSNKP----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL 275 (529)
T ss_dssp HHHHHHHHTTSTTHHH----------HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcccHH----------HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH
Confidence 8899999997665443 233333 455666666
Q ss_pred hcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-ch---hHHHHH
Q 010533 322 HAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS---NKSAII 396 (508)
Q Consensus 322 ~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~---~k~~Iv 396 (508)
.+ .+++++..++++|++|+.. ++++..+.+.||++.|+.+|....+ +.+++..++.+|++|+.. ++ .+..++
T Consensus 276 ~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~ 352 (529)
T 1jdh_A 276 GS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRHLTSRHQEAEMAQNAVR 352 (529)
T ss_dssp TC-SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTSSSTTHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC--HHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 43 3677889999999999885 5789999999999999999986433 248999999999999864 23 467899
Q ss_pred hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533 397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471 (508)
Q Consensus 397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n 471 (508)
+.|++|.|+++|.. ..++.+++.++++|.+++. +++++..+++.|+++.|+++|+. .+..++++|+|+|.|
T Consensus 353 ~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 353 LHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTHHHHHHHHHHH--HHHHHC---------
T ss_pred HcCChhHHHHHhcc-ccchHHHHHHHHHHHHHhc-ChhhhHHHHHcCCHHHHHHHHHH--HhHHHHHHHhcccCc
Confidence 99999999999982 3347999999999999996 67788999999999999999975 457788888887776
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=9.8e-28 Score=265.10 Aligned_cols=341 Identities=16% Similarity=0.136 Sum_probs=284.6
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHC-CcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~-Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
++..|...+.+. +......|+..|.++|.. ..++..+... |++|.|+++|++. .+.+++..|+.+|.
T Consensus 15 ~i~~Lv~lL~~~-------~~~vr~~A~~~L~~La~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~ 82 (644)
T 2z6h_A 15 AIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH 82 (644)
T ss_dssp THHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC-------CHHHHHHHHHHHHHHHCC---ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 477777777665 788889999999999985 4566666654 8999999999874 47889999999999
Q ss_pred HhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHH
Q 010533 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (508)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A 281 (508)
.++...+.+..+.+.|+++.|+++|.+ ++..++..++++|.+++..++.++..+++.|+++.|+++|++++..++..+
T Consensus 83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a 160 (644)
T 2z6h_A 83 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160 (644)
T ss_dssp HHTTSHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHhcChhhHHHHHHcCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence 988776778889999999999999974 479999999999999998878889899999999999999998776777778
Q ss_pred HHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH
Q 010533 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (508)
Q Consensus 282 ~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~ 361 (508)
+.+|.+|+..+ .++...+++.|+++.|+.+|++.....++..++.+|++|+..++++..+++.|+++.|+.
T Consensus 161 ~~~L~~La~~~---------~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ 231 (644)
T 2z6h_A 161 TDCLQILAYGN---------QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231 (644)
T ss_dssp HHHHHHHHTTC---------HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHhcC---------cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 88999999643 234556778899999999999876667788999999999999999999999999988877
Q ss_pred HHhccC-----------------------------------CCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHH
Q 010533 362 CIDDSG-----------------------------------LQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLI 405 (508)
Q Consensus 362 lL~~~~-----------------------------------~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv 405 (508)
++.... ...+.+++..++++|++|+.+ ++++..+++.|+++.|+
T Consensus 232 ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 232 HLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp TTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 664310 112458889999999999864 58899999999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHH
Q 010533 406 VVSARFSDDASVLQEVMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFC 482 (508)
Q Consensus 406 ~lL~~~~~~~~v~e~a~~aL~~La~~~~~---~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~ 482 (508)
++|..+++.+.+++.|+++|.+|+.++++ .+..+++.|+++.|+++|+. +++..+++.|||+|+|++. +++++..
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nLa~-~~~~~~~ 389 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLAL-CPANHAP 389 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTST-TCCHHHHHHHHHHHHHHTT-SGGGHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCc-cCchHHHHHHHHHHHHHcc-CHHHHHH
Confidence 99985444589999999999999976653 35568899999999999964 4557899999999999986 4667788
Q ss_pred HHhccc
Q 010533 483 SVMVSR 488 (508)
Q Consensus 483 ~~~~g~ 488 (508)
+++.|.
T Consensus 390 i~~~~~ 395 (644)
T 2z6h_A 390 LREQGA 395 (644)
T ss_dssp HHHTTH
T ss_pred HHHcCC
Confidence 888774
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.96 E-value=1.6e-27 Score=256.90 Aligned_cols=389 Identities=12% Similarity=0.131 Sum_probs=307.0
Q ss_pred cCCchhhhhhhhhh----cccCCCCC-----CCCCCcCCCcccccccCCccCCCCcchhhhhhHHHHHHHHHHHHhhcCC
Q 010533 12 FSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGM 82 (508)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isQetfd~~v~eni~~~~m 82 (508)
.|++.+.++.+.+. ++.+++|+ ..|+||..+.||...++..+++.+..+-..|+..
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~--------------- 161 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG--------------- 161 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS---------------
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC---------------
Confidence 46678888888887 35555665 4799999999998765444443322111111110
Q ss_pred ChhHHHHHHHHHHhhccccCCCccccCCCCCCCCCChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCC
Q 010533 83 EPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEG 162 (508)
Q Consensus 83 ~p~eal~~aI~q~~~qgvdLs~i~~~~~~~~~~~~~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~ 162 (508)
.+ + .++. +-..| ++..|...+.+. +.+....|++.|.++|.. +
T Consensus 162 ~~-~-~~~~---~~~~g-----------------------~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l~~~--~ 204 (530)
T 1wa5_B 162 TS-A-QTKV---VVDAD-----------------------AVPLFIQLLYTG-------SVEVKEQAIWALGNVAGD--S 204 (530)
T ss_dssp CH-H-HHHH---HHHTT-----------------------CHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTT--C
T ss_pred CH-H-HHHH---HHHCC-----------------------CHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCC--C
Confidence 00 0 1111 11122 245555555554 678888999999999986 7
Q ss_pred hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHH
Q 010533 163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFA 241 (508)
Q Consensus 163 ~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~ 241 (508)
+.++..+...|++|.|+.+|.+ .+.+++..|+++|..++.+. +........++++.|+.+|.. ++..++..+++
T Consensus 205 ~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~ 279 (530)
T 1wa5_B 205 TDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS--MDTETLVDACW 279 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC--CCHHHHHHHHH
T ss_pred ccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC--CCHHHHHHHHH
Confidence 8899999999999999999987 47889999999999999765 444566678999999999974 57899999999
Q ss_pred HHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHH
Q 010533 242 VVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSL 321 (508)
Q Consensus 242 ~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL 321 (508)
+|.+++...+..++.+++.|+++.|+.+|.+.+..++..|+++|.+|+..++ +..+.+.+.|+++.|+.+|
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND---------LQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH---------HHHHHHHHcchHHHHHHHH
Confidence 9999998888888889999999999999998777889999999999997653 2345566889999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--Cc--hhHHHHH
Q 010533 322 HAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SD--SNKSAII 396 (508)
Q Consensus 322 ~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~--~~k~~Iv 396 (508)
.+. +..+...++++|++|+. +++..+.+++.|+++.|+.+|.+. +..++..++++|++|+. .+ +....++
T Consensus 351 ~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~ 425 (530)
T 1wa5_B 351 SSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA----EYKTKKEACWAISNASSGGLQRPDIIRYLV 425 (530)
T ss_dssp TCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 875 67899999999999996 667788889999999999999863 34899999999999973 44 7788899
Q ss_pred hCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChh-----------hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533 397 ENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPE-----------NAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 397 ~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~-----------~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A 465 (508)
+.|+++.|+.+|. ..++.+++.++++|.+|+...+. .+..+.+.|+++.|..++ .|+ +..+++.|
T Consensus 426 ~~~~l~~L~~ll~--~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~-~~~-~~~v~~~a 501 (530)
T 1wa5_B 426 SQGCIKPLCDLLE--IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ-QNE-NDKIYEKA 501 (530)
T ss_dssp HTTCHHHHHHHTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG-GCS-CHHHHHHH
T ss_pred HCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH-cCC-CHHHHHHH
Confidence 9999999999998 66899999999999999864332 356788999999998866 454 57899999
Q ss_pred HHHHHHhhhc
Q 010533 466 CFMIRNLVAR 475 (508)
Q Consensus 466 ~~aL~nL~~~ 475 (508)
.++|.++...
T Consensus 502 ~~il~~~~~~ 511 (530)
T 1wa5_B 502 YKIIETYFGE 511 (530)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHCCc
Confidence 9999998753
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.96 E-value=4.5e-27 Score=246.41 Aligned_cols=324 Identities=12% Similarity=0.126 Sum_probs=273.0
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
.+..|...+.+. .+.+....+++.|.+++.. +++++..+.+.|++|.|+.+|++ ++.+++..|+++|..
T Consensus 65 ~i~~L~~~L~~~------~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~---~~~~vr~~a~~~L~~ 133 (450)
T 2jdq_A 65 VVARFVEFLKRK------ENCTLQFESAWVLTNIASG--NSLQTRIVIQAGAVPIFIELLSS---EFEDVQEQAVWALGN 133 (450)
T ss_dssp HHHHHHHHHTCT------TCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCC------CCHHHHHHHHHHHHHHhcC--CHHHHHHHHhCCCHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 466677776553 1567788999999999986 77888888899999999999987 478999999999999
Q ss_pred hhcCC-cchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-hhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533 203 LVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 203 l~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~ 280 (508)
++.+. +.+..+++.|+++.|+++|.. ..+..++..++++|++++... +..+..++ .|+++.|+.+|.+.+..++..
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~ 211 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLAD 211 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHH
Confidence 98765 346778889999999999974 357899999999999998654 33333333 789999999999877789999
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDAL 359 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~L 359 (508)
++|+|.+|+..+. +..+.+.+.|+++.|+.+|.+ .+..++..++++|++|+.. ++..+.+.+.|+++.|
T Consensus 212 a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 281 (450)
T 2jdq_A 212 ACWALSYLSDGPN---------DKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281 (450)
T ss_dssp HHHHHHHHTSSSH---------HHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHCCCc---------HHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHH
Confidence 9999999997542 234566788999999999985 4678999999999999985 4556778899999999
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChhhHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR-SPENAA 437 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~-~~~~~~ 437 (508)
+.+|.+. +..++..++++|++|+ ++++....+++.|++|.|+.+|. .+++.+++.|+++|.+|+.+ ++++.+
T Consensus 282 ~~ll~~~----~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 355 (450)
T 2jdq_A 282 LHLLSSP----KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ--TAEFRTRKEAAWAITNATSGGSAEQIK 355 (450)
T ss_dssp HHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999863 3589999999999998 47788888999999999999998 56899999999999999975 788888
Q ss_pred HHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCc
Q 010533 438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNP 477 (508)
Q Consensus 438 ~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~ 477 (508)
.+++.|+++.|+++|.. .+..+++.|+++|.+++...+
T Consensus 356 ~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 356 YLVELGCIKPLCDLLTV--MDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHTCHHHHHHGGGS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhch
Confidence 89999999999999974 468999999999999987543
No 24
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.5e-26 Score=255.67 Aligned_cols=333 Identities=14% Similarity=0.139 Sum_probs=277.8
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
.++..|...+.+. +......++..|.+++.. +++++..+.+.|++|.|+.+|++. ....++..++.+|.
T Consensus 140 g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~La~~--~~~~~~~i~~~g~v~~Lv~lL~~~--~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 140 GGLQKMVALLNKT-------NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLK 208 (644)
T ss_dssp THHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTTC--CCHHHHHHHHHHHH
T ss_pred CChHHHHHHHCcC-------CHHHHHHHHHHHHHHHhc--CcHHHHHHHHcCChHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 4677888887764 555666677899999986 789999999999999999999876 35667777888888
Q ss_pred HhhcCCcchhHHHhcCChHHHHHHHhc-------------------------------------CCCCHHHHHHHHHHHH
Q 010533 202 LLVHDVQSTETFRTGGGPKLLVNILID-------------------------------------GNEDPEILNSGFAVVA 244 (508)
Q Consensus 202 ~l~~~~~~~~~i~~~ggi~~Lv~lL~~-------------------------------------~~~~~~v~~~a~~~L~ 244 (508)
+++...+.+..+++.|+++.|+++|.. .+.+.+++..++++|+
T Consensus 209 nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~ 288 (644)
T 2z6h_A 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 288 (644)
T ss_dssp HHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888766777888888888877766543 1357888999999999
Q ss_pred HhhcCChhhHHHHHHcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhcCCCcchhhhhhcchHHH-HHHhcCCHHHHHHHH
Q 010533 245 ASATGNEVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR-RFAKIGIARALVHSL 321 (508)
Q Consensus 245 ~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~--~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~-~i~~~g~i~~Lv~lL 321 (508)
+++..++.+++.+.+.|+++.|+.+|...+ ..++..|+++|.+|+..+.. .+..+ .+.+.|+++.|+++|
T Consensus 289 ~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~-------~~~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 289 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-------AEMAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTT-------HHHHHHHHHHTTHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCch-------HHHHHHHHHHccChHHHHHHh
Confidence 998888889999999999999999998743 47889999999999864321 11223 356889999999999
Q ss_pred hcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC-----------------C-CCcHHHHHHHHHHHH
Q 010533 322 HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-----------------L-QGNKTVARICCSLLS 383 (508)
Q Consensus 322 ~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~-----------------~-~~~~~v~~~al~aL~ 383 (508)
++..+..++..+|++|++|+..+++...+.+.|+++.|+++|.... + ..+.+++..++.+|+
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~ 441 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHH
Confidence 9765568999999999999999888899999999999999998621 0 013478889999999
Q ss_pred HhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHH
Q 010533 384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQR 463 (508)
Q Consensus 384 ~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~ 463 (508)
+|+.++.++..+.+.|+++.|+++|. ..++.+++.++++|.+|+ .+++.+..+.+.|+++.|++++. ..++.+++
T Consensus 442 ~La~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l~~L~~ll~--~~~~~vr~ 516 (644)
T 2z6h_A 442 ILARDVHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLH--SRNEGVAT 516 (644)
T ss_dssp HHTTSHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHHTT--CSCHHHHH
T ss_pred HHhcCHHHHHHHHhCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCChhHHHHHHc--CCCHHHHH
Confidence 99999999999999999999999998 678999999999999999 47889999999999999999884 35789999
Q ss_pred HHHHHHHHhhhcCc
Q 010533 464 SSCFMIRNLVARNP 477 (508)
Q Consensus 464 ~A~~aL~nL~~~~~ 477 (508)
.|+++|.+|+...+
T Consensus 517 ~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 517 YAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhccCc
Confidence 99999999987544
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=7e-27 Score=263.75 Aligned_cols=342 Identities=16% Similarity=0.140 Sum_probs=284.3
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHC-CcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM 200 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~-Gavp~Lv~lL~~~~~~~~~~~~~al~aL 200 (508)
.++..|...+.+. +......|+..|..+|.. ..++..+... |+++.|+++|++. .+.+++..|+.+|
T Consensus 150 g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L~~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 150 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTL 217 (780)
T ss_dssp HHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhCC---ChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence 4677788877765 778888999999999984 5566667654 8999999999875 3788999999999
Q ss_pred HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~ 280 (508)
..++...+++..+.+.|+++.|+++|.+ .+..++..++++|.+++..++.++..+++.|+++.|+.+|++.+..+...
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~ 295 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9988766667888899999999999985 47999999999999999888888999999999999999999876678888
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv 360 (508)
++.+|.+|+..++ +....+++.|+++.|+.+|+++........++.+|++|+..++++..+++.|+++.|+
T Consensus 296 a~~aL~~La~~~~---------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll 366 (780)
T 2z6g_A 296 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 366 (780)
T ss_dssp HHHHHHHHHTTCH---------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHG
T ss_pred HHHHHHHHhcCCh---------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHH
Confidence 9999999986432 3445667889999999999987656667788999999999889999999999888887
Q ss_pred HHHhccC-----------------------------------CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHH
Q 010533 361 RCIDDSG-----------------------------------LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKL 404 (508)
Q Consensus 361 ~lL~~~~-----------------------------------~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~L 404 (508)
.+|.+.. ...+..++..|+++|++|+. +++++..+++.|+++.|
T Consensus 367 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 446 (780)
T 2z6g_A 367 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 446 (780)
T ss_dssp GGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 7664320 12346888999999999986 45889999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchH
Q 010533 405 IVVSARFSDDASVLQEVMSIITVLSLRSPEN---AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSF 481 (508)
Q Consensus 405 v~lL~~~~~~~~v~e~a~~aL~~La~~~~~~---~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~ 481 (508)
+++|....+.+.+++.|+++|.+|+.++++. +..+...|+++.|+++|. +++...+++.|||+|+||+. +++++.
T Consensus 447 v~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~~~~~v~~~A~~aL~nLa~-~~~~~~ 524 (780)
T 2z6g_A 447 VRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLAL-CPANHA 524 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS-TTCCHHHHHHHHHHHHHHHS-SHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc-CCChHHHHHHHHHHHHHHhc-CHHHHH
Confidence 9999854444689999999999999876653 568889999999999996 44556899999999999986 577778
Q ss_pred HHHhccc
Q 010533 482 CSVMVSR 488 (508)
Q Consensus 482 ~~~~~g~ 488 (508)
.+++.|.
T Consensus 525 ~i~~~g~ 531 (780)
T 2z6g_A 525 PLREQGA 531 (780)
T ss_dssp HHHHTTH
T ss_pred HHHHCCC
Confidence 8888773
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=4e-26 Score=220.12 Aligned_cols=242 Identities=18% Similarity=0.270 Sum_probs=216.1
Q ss_pred CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (508)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~ 296 (508)
|+++.|+++|.+ ++.+++..++++|.+++..++.++..+++.|+++.|+.+|++.+.+++..++++|.+|+.+++
T Consensus 2 ~~i~~L~~~L~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--- 76 (252)
T 4hxt_A 2 NDVEKLVKLLTS--TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--- 76 (252)
T ss_dssp CHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred CcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh---
Confidence 578999999985 469999999999999998888899999999999999999999887899999999999997642
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhh-cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La-~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~ 375 (508)
++...+.+.|+++.|+.+|++ .++.++..++++|++|+ .+++++..+.+.|+++.|+++|.+. +..++
T Consensus 77 ------~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~----~~~~~ 145 (252)
T 4hxt_A 77 ------EAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQ 145 (252)
T ss_dssp ------HHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHH
T ss_pred ------HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHH
Confidence 345567789999999999996 46889999999999999 5788999999999999999999863 34899
Q ss_pred HHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc
Q 010533 376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK 454 (508)
Q Consensus 376 ~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~ 454 (508)
..++++|++|+. +++.+..+++.|+++.|+.+|. ++++.+++.++++|.+|+..+++++..+++.|+++.|+++++.
T Consensus 146 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence 999999999986 5677789999999999999998 6789999999999999998899999999999999999999963
Q ss_pred CCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 455 FPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 455 h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
.++.+++.|+|+|+||+...+.
T Consensus 224 --~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 224 --TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp --SCHHHHHHHHHHHHHHHHTCBC
T ss_pred --CcHHHHHHHHHHHHHHHcCCCc
Confidence 4679999999999999976543
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=2.3e-25 Score=251.42 Aligned_cols=333 Identities=14% Similarity=0.132 Sum_probs=267.4
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
++..|...+.+. +......++..|+.++.. +++++..+.+.|+++.|+.+|+.. ........++.+|.+
T Consensus 277 ~v~~Lv~lL~~~-------~~~v~~~a~~aL~~La~~--~~e~~~~i~~~~~i~~Lv~lL~~~--~~~~~~~~a~~aL~~ 345 (780)
T 2z6g_A 277 GLQKMVALLNKT-------NVKFLAITTDCLQILAYG--NQESKLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKV 345 (780)
T ss_dssp HHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHTTTHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcC-------CHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 445555555443 555566677888889876 789999999999999999999875 344555556666666
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhc-------------------------------------CCCCHHHHHHHHHHHHH
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILID-------------------------------------GNEDPEILNSGFAVVAA 245 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~-------------------------------------~~~~~~v~~~a~~~L~~ 245 (508)
++.....+..+++.|+++.|+.+|.. .+.+.+++..++++|++
T Consensus 346 Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66555556677777766666554432 13578899999999999
Q ss_pred hhcCChhhHHHHHHcCcHHHHHHHHhcCC-h-HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhc
Q 010533 246 SATGNEVVKESYMELKIDELILEILSRQR-N-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA 323 (508)
Q Consensus 246 l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~-~-~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~ 323 (508)
++..++.++..+++.|+++.|+.+|...+ . .++..|+++|.+|+..+... ......+.+.|+++.|+++|.+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~------~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA------EMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH------HHHHHHHHHTTCHHHHHHTTST
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH------HHHHHHHHHcCCHHHHHHHhcC
Confidence 98888889999999999999999998743 2 78889999999998644210 0122356688999999999987
Q ss_pred CCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccC-----------------C-CCcHHHHHHHHHHHHHh
Q 010533 324 GLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG-----------------L-QGNKTVARICCSLLSKL 385 (508)
Q Consensus 324 ~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~-----------------~-~~~~~v~~~al~aL~~L 385 (508)
..+..++..+|++|++|+..+++...+.+.|+++.|+++|.+.. + ....+++..++.+|++|
T Consensus 500 ~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~L 579 (780)
T 2z6g_A 500 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHIL 579 (780)
T ss_dssp TCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHH
Confidence 65458999999999999999888899999999999999997521 0 01236788999999999
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 386 a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A 465 (508)
+.++.++..+++.|+++.|+.+|. +.++.+++.|+.+|.+|+ .+++.+..+.+.|+++.|++++. + .++.|++.|
T Consensus 580 a~~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~-~-~~~~Vr~~A 654 (780)
T 2z6g_A 580 ARDIHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLH-S-RNEGVATYA 654 (780)
T ss_dssp TTSHHHHHHHHHTCCHHHHHHGGG--CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGG-C-SCHHHHHHH
T ss_pred hcChhhHHHHHHCCcHHHHHHHHc--CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHc-C-CCHHHHHHH
Confidence 999999999999999999999998 678999999999999998 57899999999999999999985 3 578999999
Q ss_pred HHHHHHhhhcCc
Q 010533 466 CFMIRNLVARNP 477 (508)
Q Consensus 466 ~~aL~nL~~~~~ 477 (508)
+|+|.+|+...+
T Consensus 655 ~~aL~~l~~~~~ 666 (780)
T 2z6g_A 655 AAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCh
Confidence 999999987554
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=8.2e-26 Score=219.14 Aligned_cols=238 Identities=17% Similarity=0.198 Sum_probs=210.8
Q ss_pred CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (508)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~ 296 (508)
...+.+++.|.+ ++.+++..++++|+++.+.++.++..+++.|+++.|+.+|++.+.+++..|+++|.+|+.+++
T Consensus 12 ~~~~~~~~~L~s--~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--- 86 (252)
T 4db8_A 12 SELPQMTQQLNS--DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--- 86 (252)
T ss_dssp CSHHHHHHHHHS--SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH---
T ss_pred chHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH---
Confidence 357889999974 578899999999987666678889999999999999999998887899999999999997542
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhH-hHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC-KSVAENGGIDALLRCIDDSGLQGNKTVA 375 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~-~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~ 375 (508)
++...+++.|+++.|+.+|++. ++.++..++++|++|+..++.+ ..+.+.|+++.|+++|.+. +..++
T Consensus 87 ------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~v~ 155 (252)
T 4db8_A 87 ------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQIL 155 (252)
T ss_dssp ------HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS----CHHHH
T ss_pred ------HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC----CHHHH
Confidence 3456777899999999999974 6889999999999999988887 8899999999999999763 35899
Q ss_pred HHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc
Q 010533 376 RICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK 454 (508)
Q Consensus 376 ~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~ 454 (508)
..++++|++|+. +++++..+++.|+++.|+++|. .+++.+++.++++|.+|+..+++++..+++.|+++.|+++|..
T Consensus 156 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~ 233 (252)
T 4db8_A 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGG--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHC--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence 999999999986 5688888999999999999998 5689999999999999998899999999999999999999964
Q ss_pred CCCcHHHHHHHHHHHHHhhh
Q 010533 455 FPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 455 h~~~~~vq~~A~~aL~nL~~ 474 (508)
.++.+++.|+|+|.||+.
T Consensus 234 --~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 234 --ENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp --SSSHHHHTHHHHHHTTC-
T ss_pred --CCHHHHHHHHHHHHHHhc
Confidence 467999999999999974
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.6e-24 Score=208.81 Aligned_cols=240 Identities=19% Similarity=0.286 Sum_probs=212.0
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc-chhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e 251 (508)
|++|.|+.+|++. +.+++..|+++|..++.+.+ .+..+++.|+++.|+++|.+ ++.+++..++++|++++..++
T Consensus 2 ~~i~~L~~~L~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 2 NDVEKLVKLLTST---DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp CHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred CcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCh
Confidence 6899999999884 68899999999999987664 67888999999999999985 479999999999999988889
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (508)
Q Consensus 252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~ 331 (508)
.++..+++.|+++.|+.+|++++.+++..++++|.+|+..++ ++...+.+.|+++.|+++|++. ++.++.
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~~l~~~-~~~~~~ 146 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---------EAIKAIVDAGGVEVLVKLLTST-DSEVQK 146 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHCCCHHHHHHHHcCC-CHHHHH
Confidence 999999999999999999998777899999999999995432 3455677889999999999864 678999
Q ss_pred HHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHh
Q 010533 332 SASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 332 ~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
.++++|++|+. +++.+..+.+.|+++.|+.+|.+. +..++..++.+|.+|+. +++.+..+++.|+++.|++++.
T Consensus 147 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST----DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC
Confidence 99999999998 556678899999999999999853 34899999999999986 6788889999999999999998
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCCh
Q 010533 410 RFSDDASVLQEVMSIITVLSLRSP 433 (508)
Q Consensus 410 ~~~~~~~v~e~a~~aL~~La~~~~ 433 (508)
.+++.+++.|+++|.+|+...+
T Consensus 223 --~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 223 --STDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp --CSCHHHHHHHHHHHHHHHHTCB
T ss_pred --CCcHHHHHHHHHHHHHHHcCCC
Confidence 6789999999999999997544
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2.9e-24 Score=208.14 Aligned_cols=237 Identities=18% Similarity=0.250 Sum_probs=206.5
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhc-CCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVH-DVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~-~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e 251 (508)
..+|.++.+|++. +.+++..|+++|..++. +.+.+..+++.|+++.|+++|.+ ++.+++..++++|++++..++
T Consensus 12 ~~~~~~~~~L~s~---~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 12 SELPQMTQQLNSD---DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CSHHHHHHHHHSS---CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred chHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCH
Confidence 4589999999984 67888889999966543 34556788999999999999985 469999999999999998889
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (508)
Q Consensus 252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~ 331 (508)
.++..+++.|+++.|+.+|++++..++..|+++|.+|+.+++.+ ...+.+.|+++.|+.+|++. ++.++.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---------~~~~~~~~~i~~L~~lL~~~-~~~v~~ 156 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ---------IQAVIDAGALPALVQLLSSP-NEQILQ 156 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH---------HHHHHHTTHHHHHHHGGGCS-CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH---------HHHHHHCCCHHHHHHHHhCC-CHHHHH
Confidence 99999999999999999999987789999999999999766432 24677889999999999874 678999
Q ss_pred HHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhHHHHHhCCcHHHHHHHHh
Q 010533 332 SASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 332 ~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
.++++|++|+. ++++...+++.|+++.|+++|.+. +..++..++.+|.+|+ ++++++..+++.|+++.|+.+|.
T Consensus 157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence 99999999998 567788899999999999999863 3489999999999998 57788999999999999999998
Q ss_pred ccCCCHHHHHHHHHHHHHHhc
Q 010533 410 RFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 410 ~~~~~~~v~e~a~~aL~~La~ 430 (508)
.+++.+++.|+++|.+|+.
T Consensus 233 --~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 233 --HENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp --CSSSHHHHTHHHHHHTTC-
T ss_pred --CCCHHHHHHHHHHHHHHhc
Confidence 6688999999999999983
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=202.77 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=172.2
Q ss_pred ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhh
Q 010533 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
.+|.+|++|.+...+.+++..++++|.++|..++.+|..+++.|+||+|+++|++++.++++.|+|+|++|+.+++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~---- 84 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN---- 84 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH----
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH----
Confidence 5899999998654455899999999999998899999999999999999999999888999999999999997542
Q ss_pred hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc---cC-------
Q 010533 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD---SG------- 367 (508)
Q Consensus 298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~---~~------- 367 (508)
++...|++.|+||+|+++|++..+.++++.++++||+|+..++++..|++ +|+++|++++.. ..
T Consensus 85 -----~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~ 158 (233)
T 3tt9_A 85 -----DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPK 158 (233)
T ss_dssp -----HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred -----HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccccc
Confidence 35567889999999999998655778999999999999999999999997 579999886531 10
Q ss_pred --CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCc-HHHHHHHHhcc----CCCHHHHHHHHHHHHHHhcC
Q 010533 368 --LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGG-MDKLIVVSARF----SDDASVLQEVMSIITVLSLR 431 (508)
Q Consensus 368 --~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Gg-l~~Lv~lL~~~----~~~~~v~e~a~~aL~~La~~ 431 (508)
...+.+++.++.++|+||+. ++++|..|++++| |+.|+.+++.. ..+...+|+|+++|+||+.+
T Consensus 159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 01245899999999999987 5699999998865 79999999742 22457899999999999975
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.8e-23 Score=223.81 Aligned_cols=327 Identities=13% Similarity=0.076 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-CCcHHHHHHHHhcccCCCHHHHHHHHH
Q 010533 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLK 198 (508)
Q Consensus 120 v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-~Gavp~Lv~lL~~~~~~~~~~~~~al~ 198 (508)
+....+.++.++.+. +.+....|++.|.-+.. ++.-|..+++ .|.++.|+.+++.. .+..+...++.
T Consensus 332 i~~La~~~~~~L~~~-------~~~~~~~AvEgLaYLSl---~~~VKe~L~~d~~~L~~Lv~llk~~--~d~s~~Ygal~ 399 (778)
T 3opb_A 332 LKQLSEIFINAISRR-------IVPKVEMSVEALAYLSL---KASVKIMIRSNESFTEILLTMIKSQ--KMTHCLYGLLV 399 (778)
T ss_dssp HHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHTT---SSHHHHHHHHCHHHHHHHHHHHTTT--CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhC---CHHHHHHHHhCHHHHHHHHHHHhCC--CCchHHHHHHH
Confidence 556677777777664 55668889999999977 5666666666 55699999999863 46788999999
Q ss_pred HHHHhhcCCc---------------------------------------chhHHHhcCChHHHHHHHhcCCCCHHHHHHH
Q 010533 199 TMALLVHDVQ---------------------------------------STETFRTGGGPKLLVNILIDGNEDPEILNSG 239 (508)
Q Consensus 199 aLa~l~~~~~---------------------------------------~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a 239 (508)
+|++++++.+ .+..+.+.|+++.|+.++.+ +++.+++.+
T Consensus 400 IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~~~re~A 477 (778)
T 3opb_A 400 IMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSPNCKQQV 477 (778)
T ss_dssp HHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCHHHHHHH
T ss_pred HHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHH
Confidence 9999987432 12344678999999999975 578999999
Q ss_pred HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH---HHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHH
Q 010533 240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRND---SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA 316 (508)
Q Consensus 240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~---~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~ 316 (508)
+++|.+++ .++.+|..+++.|++++|+.+|.++... ...+|+++|.+|+...++...|++.. -.|+|++
T Consensus 478 ~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~-------~~~aI~p 549 (778)
T 3opb_A 478 VRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYS-------ALNAIPF 549 (778)
T ss_dssp HHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSC-------STTHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCc-------cccchHH
Confidence 99999996 5688999999999999999999987542 77899999999997776665553210 1389999
Q ss_pred HHHHHhcCCCh-------------hHHHHHHHHHHHhhcCh-----hhHhHHhhc-CCHHHHHHHHhccCCCCcHHHHHH
Q 010533 317 LVHSLHAGLSS-------------PSLISASIALKAVAVND-----EICKSVAEN-GGIDALLRCIDDSGLQGNKTVARI 377 (508)
Q Consensus 317 Lv~lL~~~~d~-------------~~~~~a~~aL~~La~~~-----e~~~~i~e~-Ggi~~Lv~lL~~~~~~~~~~v~~~ 377 (508)
|+++|..+++. -...+++.||.|||..+ +.++.|++. |+++.|.++|.+. +..++++
T Consensus 550 Lv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~----n~~VrrA 625 (778)
T 3opb_A 550 LFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE----NVPLQRS 625 (778)
T ss_dssp HHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS----SHHHHHH
T ss_pred HHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC----CHHHHHH
Confidence 99999832211 12678999999999865 457888885 9999999999863 3489999
Q ss_pred HHHHHHHhhCCchhH-HHHHhC------CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHH
Q 010533 378 CCSLLSKLAGSDSNK-SAIIEN------GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAI 449 (508)
Q Consensus 378 al~aL~~La~~~~~k-~~Iv~~------Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~-G~i~~Lv 449 (508)
|+.+|.||+.+++.. ..+.+. +++++||.++. +++..+++.|+|+|++++..++.+++.+++. ++++.++
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 999999999888764 344322 34889999998 7899999999999999987799999999998 8999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 450 QAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 450 ~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
.+++.-.++.+++..+..+++||+.
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 9998744678999999999999995
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=3.1e-23 Score=199.91 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=170.0
Q ss_pred cHHHHHHHHhcCCh--HHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHH
Q 010533 262 IDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (508)
Q Consensus 262 ~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~ 339 (508)
.++.|+++|++++. .++..|+++|.+|+..++ ++.+.+++.|+||+|+++|++. +++++..++|+|++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~---------~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~n 78 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKS---------EARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRN 78 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH---------HHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc---------HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 58999999998876 788899999999996442 3445677999999999999874 68899999999999
Q ss_pred hhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh----c----
Q 010533 340 VAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA----R---- 410 (508)
Q Consensus 340 La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~----~---- 410 (508)
|+. +++++..|++.|||++|+++|.... +.+++++++++|++|+..+++|..|++ +|+|+|++++. .
T Consensus 79 La~~~~~nk~~I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 79 LVFEDNDNKLEVAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGG
T ss_pred HHhCCHHHHHHHHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccc
Confidence 998 6899999999999999999998532 348999999999999999999999997 57999998652 1
Q ss_pred ------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhhc
Q 010533 411 ------FSDDASVLQEVMSIITVLSLRSPENAARAMEA-GSGDLAIQAMLK----FPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 411 ------~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~-G~i~~Lv~~L~~----h~~~~~vq~~A~~aL~nL~~~ 475 (508)
+..++.++++|.++|+||+..++++++.+.+. |+++.|+.+++. ...+.+.+++|..+|+||+.|
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 12467999999999999998889999999987 557999999875 222457789999999999875
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=4e-22 Score=187.89 Aligned_cols=198 Identities=19% Similarity=0.245 Sum_probs=174.5
Q ss_pred HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHH
Q 010533 259 ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (508)
Q Consensus 259 ~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~ 338 (508)
..|+.+.|+.+|++.+.+++..|+++|.+|+..++ ++.+.+.+.|+++.|+++|++. ++.++..++++|+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~---------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~ 79 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN---------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALS 79 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 45889999999998888899999999999996542 3456778899999999999875 6889999999999
Q ss_pred Hhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHH
Q 010533 339 AVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDAS 416 (508)
Q Consensus 339 ~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~ 416 (508)
+|+. +++++..+++.|+++.|+.+|.+. +..++..++++|++|+. +++.+..+++.|+++.|+++|. .+++.
T Consensus 80 ~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~ 153 (210)
T 4db6_A 80 NIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQ 153 (210)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHTTCS----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHH
T ss_pred HHhcCCcHHHHHHHHCCCHHHHHHHHcCC----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc--CCCHH
Confidence 9995 778889999999999999999864 35899999999999985 6677888999999999999998 66899
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+++.++++|.+|+..+++++..+.+.|+++.|++++.. .++.+++.|+++|++|+.
T Consensus 154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHhc
Confidence 99999999999998889999999999999999999963 568999999999999974
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.5e-22 Score=217.92 Aligned_cols=281 Identities=12% Similarity=0.097 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHhcC-ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh------------------
Q 010533 191 RVLDSCLKTMALLVHDVQSTETFRTGG-GPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------------------ 251 (508)
Q Consensus 191 ~~~~~al~aLa~l~~~~~~~~~i~~~g-gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e------------------ 251 (508)
+-+.+|++.|++++.+.+-|+.+++.. .++.|+++|+. ..+..+...++.+|.|++...+
T Consensus 349 ~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~ 427 (778)
T 3opb_A 349 PKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX 427 (778)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc
Confidence 347789999999988877788888765 49999999975 3466788999999999976322
Q ss_pred --------------------hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhc
Q 010533 252 --------------------VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (508)
Q Consensus 252 --------------------~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~ 311 (508)
.+|..+.++|+++.|+.++++.++.++..|+|+|.+|+.++++|. .+++.
T Consensus 428 ~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~----------~lvqq 497 (778)
T 3opb_A 428 XXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIP----------QLAQQ 497 (778)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHH----------HHHHT
T ss_pred cCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH----------HHHHC
Confidence 167778899999999999999888899999999999998766553 67788
Q ss_pred CCHHHHHHHHhcCCCh--hHHHHHHHHHHHhhcChhhHhHHh--h-cCCHHHHHHHHhccCCCC---------cHHH-HH
Q 010533 312 GIARALVHSLHAGLSS--PSLISASIALKAVAVNDEICKSVA--E-NGGIDALLRCIDDSGLQG---------NKTV-AR 376 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~--~~~~~a~~aL~~La~~~e~~~~i~--e-~Ggi~~Lv~lL~~~~~~~---------~~~v-~~ 376 (508)
|++++|+.+|.++++. .+...++.||.+|+...+....+. . .|+|++|+++|...++.. -..+ ..
T Consensus 498 Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f 577 (778)
T 3opb_A 498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY 577 (778)
T ss_dssp THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence 9999999999987533 278899999999986443333231 1 389999999998322211 0012 56
Q ss_pred HHHHHHHHhhCCc-----hhHHHHHhC-CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcC------
Q 010533 377 ICCSLLSKLAGSD-----SNKSAIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA-ARAMEAG------ 443 (508)
Q Consensus 377 ~al~aL~~La~~~-----~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~-~~i~~~G------ 443 (508)
+|+.+|.|||+.+ +.+..|++. |+++.|..+|. +++..+++.||++|+||+. +++.. +.+.+.+
T Consensus 578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhc
Confidence 9999999999765 457888985 99999999998 6789999999999999996 77764 3554322
Q ss_pred cHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 444 SGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 444 ~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
.++.|+.++. .++..+|+.|+|||.|+++.++..++.+++..
T Consensus 655 rL~lLV~Ll~--s~D~~~r~AAagALAnLts~~~~ia~~ll~~~ 696 (778)
T 3opb_A 655 NFNILVKLLQ--LSDVESQRAVAAIFANIATTIPLIAKELLTKK 696 (778)
T ss_dssp HHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCH
T ss_pred cHHHHHHHHc--CCCHHHHHHHHHHHHHhcCCChHHHHHHHHcc
Confidence 4778999984 47899999999999999888899999999874
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.2e-21 Score=184.62 Aligned_cols=202 Identities=19% Similarity=0.264 Sum_probs=174.9
Q ss_pred hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 010533 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~ 290 (508)
+.....++.+.|+.+|. +++.+++..++++|++++..++.++..+++.|+++.|+.+|++++..++..|+++|.+|+.
T Consensus 6 ~~~~~~~~~~~l~~LL~--s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 6 HHHHHGSELPQMVQQLN--SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp -------CHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccccccchhHHHHHHhc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 34556788999999997 4689999999999999998899999999999999999999998877899999999999996
Q ss_pred CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCC
Q 010533 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQ 369 (508)
Q Consensus 291 ~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~ 369 (508)
+++ ++...+.+.|+++.|+.+|++. ++.++..++++|++|+. +++.+..+++.|+++.|+++|.+.
T Consensus 84 ~~~---------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--- 150 (210)
T 4db6_A 84 GGN---------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--- 150 (210)
T ss_dssp SCH---------HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---
T ss_pred CCc---------HHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---
Confidence 552 3455677899999999999875 68899999999999996 567778899999999999999863
Q ss_pred CcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 370 GNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+..++..++++|.+|+.. ++++..+++.|+++.|++++. .+++.+++.|+++|.+|+.
T Consensus 151 -~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 151 -NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp -CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHhc
Confidence 348999999999999875 789999999999999999998 6789999999999999984
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=5.3e-20 Score=184.10 Aligned_cols=224 Identities=13% Similarity=0.157 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC
Q 010533 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (508)
Q Consensus 234 ~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g 312 (508)
+-...++..|..++. +.+|...|.+.|++++|+. +|.+++..++..|+|+|.+++.+++ +..+.+++.|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~---------~~~~~vv~~g 124 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA---------AIQEQVLGLG 124 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH---------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH---------HHHHHHHHCC
Confidence 456678888888864 5568888999999999999 9998877899999999999997653 2344566899
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCch
Q 010533 313 IARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDS 390 (508)
Q Consensus 313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~ 390 (508)
++++|+.+|++.++..++..++|+|++|+. ++...+.+.+.||++.|+.+|.+. +..++..++++|++|+ ++++
T Consensus 125 ~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~~~~ 200 (296)
T 1xqr_A 125 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVGHPE 200 (296)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhCChH
Confidence 999999999975567899999999999997 456677899999999999999863 3589999999999997 4688
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--CcHHHH---HHHHHcCCCcHHHHHHH
Q 010533 391 NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEA--GSGDLA---IQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 391 ~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~--G~i~~L---v~~L~~h~~~~~vq~~A 465 (508)
.+..+++.|++++|+.+|. ++++.+++.++.+|.+|+...+......... .....| .+.++.|..+..+-+.+
T Consensus 201 ~~~~vv~~g~i~~Lv~LL~--~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~ 278 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFC 278 (296)
T ss_dssp GHHHHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHc--CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999999999999999998 6788999999999999997666554443321 122222 33344454344555566
Q ss_pred HHHHHHhh
Q 010533 466 CFMIRNLV 473 (508)
Q Consensus 466 ~~aL~nL~ 473 (508)
...|.++.
T Consensus 279 ~~il~~~f 286 (296)
T 1xqr_A 279 EKLLQTCF 286 (296)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 66666654
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.84 E-value=1.8e-19 Score=180.29 Aligned_cols=183 Identities=14% Similarity=0.178 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHH-HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHH
Q 010533 190 KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (508)
Q Consensus 190 ~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~ 268 (508)
.+-...|+..|..++.+.++...|...||++.|+. +|. ++++.+++.|+|+|++++..++.+++.+++.|++++|+.
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 34566788888888876566678899999999999 997 468999999999999999999999999999999999999
Q ss_pred HHhcC-ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-Chhh
Q 010533 269 ILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEI 346 (508)
Q Consensus 269 lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~ 346 (508)
+|++. +..++++|+|+|++|+.+... ..+.+.+.|++++|+.+|++. +..++..+||+|++|+. +++.
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~---------~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~ 201 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEA---------GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEH 201 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHH---------HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcH---------HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHH
Confidence 99975 558899999999999976532 344677889999999999974 78899999999999987 6788
Q ss_pred HhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC
Q 010533 347 CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS 388 (508)
Q Consensus 347 ~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~ 388 (508)
++.+++.|+++.|+.+|... + ..+++.++.+|++|+..
T Consensus 202 ~~~vv~~g~i~~Lv~LL~~~-d---~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 202 KGTLCSMGMVQQLVALVRTE-H---SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTTHHHHHHHHHTSC-C---STHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCC-C---hhHHHHHHHHHHHHHhC
Confidence 99999999999999999863 2 27999999999999865
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=5.3e-15 Score=158.95 Aligned_cols=343 Identities=12% Similarity=0.084 Sum_probs=254.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHH
Q 010533 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL 197 (508)
Q Consensus 118 ~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al 197 (508)
..+.+.++.|..-+++.. -.++-+.|+..|+.+++. .+ .. +.++++|.|+..|++.. .|.++...++
T Consensus 17 qs~~etI~~L~~Rl~~~t------l~eDRR~Av~~Lk~~sk~--y~---~~-Vg~~~l~~li~~L~~d~-~D~e~v~~~L 83 (651)
T 3grl_A 17 HTEAETIQKLCDRVASST------LLDDRRNAVRALKSLSKK--YR---LE-VGIQAMEHLIHVLQTDR-SDSEIIGYAL 83 (651)
T ss_dssp -CHHHHHHHHHHHHHHCC------SHHHHHHHHHHHHHTTTT--TT---TH-HHHHTHHHHHHHHHSCT-TCHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhcc------chhHHHHHHHHHHHHHHH--hH---HH-hhhhhHHHHHHHHhccc-ccHHHHHHHH
Confidence 336677888877776642 578899999999999765 33 23 34678999999998864 6789999999
Q ss_pred HHHHHhhcCCcc------------------hhHHH-hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh-hHHHH
Q 010533 198 KTMALLVHDVQS------------------TETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-VKESY 257 (508)
Q Consensus 198 ~aLa~l~~~~~~------------------~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~-nr~~i 257 (508)
.+|..+....+. .+.|+ +.++++.|+.+|+ .++-.++..++.+|..+|...+. +++.|
T Consensus 84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~I 161 (651)
T 3grl_A 84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQII 161 (651)
T ss_dssp HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999877643321 12333 3578999999997 46889999999999999987776 78888
Q ss_pred HHc-CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhcCC---ChhHHHH
Q 010533 258 MEL-KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL---SSPSLIS 332 (508)
Q Consensus 258 ~~~-G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~~~---d~~~~~~ 332 (508)
..+ +||+.|+.+|....+.++-++..+|.+|+.++ ...++++ -.|+++.|+++++... ...++.+
T Consensus 162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n----------~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~D 231 (651)
T 3grl_A 162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN----------GAIQKIVAFENAFERLLDIITEEGNSDGGIVVED 231 (651)
T ss_dssp HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC----------HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHH
T ss_pred HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC----------HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHH
Confidence 866 99999999998765444445888999999755 2445555 5699999999999743 1356788
Q ss_pred HHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCC--cHHHHHH---HHHHHHHhhCC-------chhHHHHHhCC
Q 010533 333 ASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQG--NKTVARI---CCSLLSKLAGS-------DSNKSAIIENG 399 (508)
Q Consensus 333 a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~--~~~v~~~---al~aL~~La~~-------~~~k~~Iv~~G 399 (508)
....|.+|.. |..|...+.|.|+++.|..+|....+.. ......+ ++.+++-|... ..|+.++.+.|
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 8888999998 5567888999999999999987432210 0113334 66677777532 25788999999
Q ss_pred cHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC-----cHHHHHHH----HHcCCCcHHHHHHHHHHHH
Q 010533 400 GMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAG-----SGDLAIQA----MLKFPNAQQLQRSSCFMIR 470 (508)
Q Consensus 400 gl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G-----~i~~Lv~~----L~~h~~~~~vq~~A~~aL~ 470 (508)
+++.|++++....-...++..|+.+++.+..+|+.++..+.... ..+.++.+ +.. .....++-.||..+.
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~-~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE-RQPFVLRCAVLYCFQ 390 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT-TSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 99999999874434678999999999999999999999988653 12333333 322 234677888999999
Q ss_pred HhhhcCccchHHHHhc
Q 010533 471 NLVARNPENSFCSVMV 486 (508)
Q Consensus 471 nL~~~~~e~~~~~~~~ 486 (508)
....+|++.+..++..
T Consensus 391 ay~~~N~~~Q~~i~~~ 406 (651)
T 3grl_A 391 CFLYKNQKGQGEIVST 406 (651)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 9999998776666643
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=5.2e-14 Score=151.28 Aligned_cols=300 Identities=12% Similarity=0.105 Sum_probs=230.2
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh-
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV- 252 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~- 252 (508)
.|+.|++=+++.. -.+-...|+..|-++..+. +.-+.++|++.|+..|++..+|.++...++.+|.++...++.
T Consensus 22 tI~~L~~Rl~~~t--l~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 22 TIQKLCDRVASST--LLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHCC--SHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4777777776652 3455667888888887654 566778999999999999889999999999999886554332
Q ss_pred ----------------hHHHHH-HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh-cCCH
Q 010533 253 ----------------VKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIA 314 (508)
Q Consensus 253 ----------------nr~~i~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~-~g~i 314 (508)
+.+.|+ +.+.|+.|+++|++.+-.+..++...|..|+.... ..+.+.|.. .+||
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~--------~~~Q~~Il~~p~gi 168 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG--------PQVQQIILVSPMGV 168 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH--------HHHHHHHHHSTTHH
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHhCcccH
Confidence 334555 55899999999988766788889999999986432 235667774 4999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh-cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchhH
Q 010533 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE-NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSNK 392 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e-~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~k 392 (508)
+.|+++|.+.. ..++.++...|.+|+..+...++++. .|+++.|++++.......-..++..|+.+|.+|. .|..|+
T Consensus 169 ~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ 247 (651)
T 3grl_A 169 SRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ 247 (651)
T ss_dssp HHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence 99999998642 44666788889999997777766664 5999999999986432112478899999999997 477899
Q ss_pred HHHHhCCcHHHHHHHHhccCC----CHHHHHH---HHHHHHHHhcC------ChhhHHHHHhcCcHHHHHHHHHcCCCcH
Q 010533 393 SAIIENGGMDKLIVVSARFSD----DASVLQE---VMSIITVLSLR------SPENAARAMEAGSGDLAIQAMLKFPNAQ 459 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~---a~~aL~~La~~------~~~~~~~i~~~G~i~~Lv~~L~~h~~~~ 459 (508)
..+.+.|+++.|..+|.-... .+....+ +..++..|+.. ++.|+.++.+.|+++.|++++....-..
T Consensus 248 ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~ 327 (651)
T 3grl_A 248 NFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPA 327 (651)
T ss_dssp HHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCH
T ss_pred HHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCH
Confidence 999999999999999862111 1222334 66677777765 4578999999999999999987544456
Q ss_pred HHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 460 QLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 460 ~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
.++..|..++..+..+|+.+...|....
T Consensus 328 ~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 328 DILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 7888999999999999999999988654
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.13 E-value=4.9e-10 Score=124.43 Aligned_cols=200 Identities=12% Similarity=0.054 Sum_probs=150.7
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhh
Q 010533 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (508)
Q Consensus 262 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La 341 (508)
.|.++++.|++.+...+..||++|.+|+.+. ...+.+...|++.+++.-+-..++.+++..++++|+||+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~----------~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDA----------KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH----------HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc----------HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4555778899887788899999999999643 233455677888887665444457889999999999999
Q ss_pred cC--hhhHhHHhhcCCHHHHHHHHhccCCC-----------C------cHHHHHHHHHHHHHhhC-CchhHHHHHhCCcH
Q 010533 342 VN--DEICKSVAENGGIDALLRCIDDSGLQ-----------G------NKTVARICCSLLSKLAG-SDSNKSAIIENGGM 401 (508)
Q Consensus 342 ~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~-----------~------~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl 401 (508)
.. .+.|..+++.|++++|+.++....+. . -.++..+++.+|++|+. +++....|.+.|++
T Consensus 105 ~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l 184 (684)
T 4gmo_A 105 QEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTI 184 (684)
T ss_dssp HHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHH
T ss_pred hhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccH
Confidence 74 68899999999999999998642100 0 02456788999999984 67778889999999
Q ss_pred HHHHHHHhccC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH--HHcCCCcHHHHHHHHHHHHHhh
Q 010533 402 DKLIVVSARFS-DDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA--MLKFPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 402 ~~Lv~lL~~~~-~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~--L~~h~~~~~vq~~A~~aL~nL~ 473 (508)
+.|+..|.... ....++..++.+|..|+..|++....+.+.|.......+ +.++.. ..+..+|+.|+|+.
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence 99999885332 347899999999999999999999999988754322222 333433 33568999999974
No 42
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.10 E-value=1.6e-08 Score=98.87 Aligned_cols=252 Identities=14% Similarity=0.061 Sum_probs=177.8
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
+++.|...+.+. +......|++.|.++. ++ +++|.|+.+|.+ ++..+...|+++|..
T Consensus 24 ~i~~L~~~L~~~-------~~~vr~~A~~~L~~~~----~~---------~~~~~L~~~l~d---~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 24 NDDELFRLLDDH-------NSLKRISSARVLQLRG----GQ---------DAVRLAIEFCSD---KNYIRRDIGAFILGQ 80 (280)
T ss_dssp CHHHHHHHTTCS-------SHHHHHHHHHHHHHHC----CH---------HHHHHHHHHHTC---SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC-------CHHHHHHHHHHHHccC----Cc---------hHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 466677776654 6676777888887774 22 368999999987 477888888898887
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHH
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILID---GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~---~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~ 279 (508)
+.... ..++.++.+|.. ..++..++..++++|+.++..++... ...++.|+..|++.+..+..
T Consensus 81 l~~~~---------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~ 146 (280)
T 1oyz_A 81 IKICK---------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRR 146 (280)
T ss_dssp SCCCT---------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHH
T ss_pred hcccc---------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHH
Confidence 65322 123444444321 24688999999999999864332211 13578888999887778888
Q ss_pred HHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHH
Q 010533 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDAL 359 (508)
Q Consensus 280 ~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~L 359 (508)
.|+++|..+.. .++++.|+.+|++ +++.+...++++|+.+...++ ..++.|
T Consensus 147 ~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~--------~~~~~L 197 (280)
T 1oyz_A 147 ATAFAISVIND--------------------KATIPLLINLLKD-PNGDVRNWAAFAININKYDNS--------DIRDCF 197 (280)
T ss_dssp HHHHHHHTC-----------------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCCCH--------HHHHHH
T ss_pred HHHHHHHhcCC--------------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccCcH--------HHHHHH
Confidence 89999986642 2578999999986 467788999999988853221 246778
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i 439 (508)
+.++.+. +..+...++.+|+.+. ....++.|+.+|. .+ .++..++.+|..+. ++
T Consensus 198 ~~~l~d~----~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~--d~--~vr~~a~~aL~~i~--~~------ 251 (280)
T 1oyz_A 198 VEMLQDK----NEEVRIEAIIGLSYRK----------DKRVLSVLCDELK--KN--TVYDDIIEAAGELG--DK------ 251 (280)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHTT----------CGGGHHHHHHHHT--SS--SCCHHHHHHHHHHC--CG------
T ss_pred HHHhcCC----CHHHHHHHHHHHHHhC----------CHhhHHHHHHHhc--Cc--cHHHHHHHHHHhcC--ch------
Confidence 8888652 3589999999999875 2357899999997 32 38889999998885 22
Q ss_pred HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (508)
Q Consensus 440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~ 470 (508)
..++.|.+++..+.+ ..+...+..+|.
T Consensus 252 ---~~~~~L~~~l~~~~~-~~~~~~~~~~l~ 278 (280)
T 1oyz_A 252 ---TLLPVLDTMLYKFDD-NEIITSAIDKLK 278 (280)
T ss_dssp ---GGHHHHHHHHTTSSC-CHHHHHHHHHHT
T ss_pred ---hhhHHHHHHHhcCCC-cHHHHHHHHHhh
Confidence 468889999977654 455556655553
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.08 E-value=1.3e-09 Score=123.70 Aligned_cols=311 Identities=12% Similarity=0.042 Sum_probs=198.0
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHH-------CCcHHHHHHHHhcccCCCHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-------NGGVELVCSICYKMRCGSKRVLDS 195 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~-------~Gavp~Lv~lL~~~~~~~~~~~~~ 195 (508)
.+..|...+.+. +......++..|..+|+. .+.. +.. .+.+|.|+.++++ .+.+++..
T Consensus 129 ll~~L~~~l~~~-------~~~~r~~al~~L~~i~~~--~~~~---~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~ 193 (852)
T 4fdd_A 129 LLPKLCSLLDSE-------DYNTCEGAFGALQKICED--SAEI---LDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSH 193 (852)
T ss_dssp HHHHHHHHHSCS-------SHHHHHHHHHHHHHHHHH--HTTH---HHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHH
T ss_pred HHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHH--hHHH---hchhhhcchHHHHHHHHHHHhcC---CCHHHHHH
Confidence 456666666654 566677888999998874 2221 111 2356677776665 47889999
Q ss_pred HHHHHHHhhcCCcchhHHHh--cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC
Q 010533 196 CLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ 273 (508)
Q Consensus 196 al~aLa~l~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~ 273 (508)
|+++|..+..... ..+.. ...++.++.++. .++.+++..++++|..++...+..-...++ +.++.++.++...
T Consensus 194 A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~--d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~ 268 (852)
T 4fdd_A 194 AVACVNQFIISRT--QALMLHIDSFIENLFALAG--DEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQ 268 (852)
T ss_dssp HHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCC
Confidence 9999988775432 12211 234566777665 458899999999999987654432111122 4778888888876
Q ss_pred ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHh---cCCHHHHHHHHh----------cC-----------CChhH
Q 010533 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLH----------AG-----------LSSPS 329 (508)
Q Consensus 274 ~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~---~g~i~~Lv~lL~----------~~-----------~d~~~ 329 (508)
++.+...|++++..++..... +.+.. ...++.++..|. .. .+..+
T Consensus 269 ~~~vr~~a~e~l~~l~~~~~~-----------~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v 337 (852)
T 4fdd_A 269 DENVALEACEFWLTLAEQPIC-----------KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337 (852)
T ss_dssp SHHHHHHHHHHHHHHTTSTTH-----------HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred cHHHHHHHHHHHHHHhcchhH-----------HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence 668888999999998854311 11111 134666766662 11 11235
Q ss_pred HHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533 330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 330 ~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
...++.+|..|+.... ..+.. ..++.+..++.+ .+..++..|+.+|++++......-.-.-.+.++.|+.+|.
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFH----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence 6677788888875321 11221 234556666653 2468999999999999864322111112356788888887
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 410 RFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 410 ~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
..++.|+..++++|.+++...+.......-.+.++.+++.|.. +++.|+..|||+|.+++..
T Consensus 411 --d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d--~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 411 --DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD--SNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp --CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHH
Confidence 6689999999999999985322110011112456778888853 4689999999999999853
No 44
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.08 E-value=1.7e-08 Score=98.68 Aligned_cols=240 Identities=8% Similarity=-0.011 Sum_probs=171.2
Q ss_pred HHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhh
Q 010533 168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASA 247 (508)
Q Consensus 168 ~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~ 247 (508)
.....+.++.|+.+|.+ ++..++..|+++|..+.. .+.++.|+++|. .++..++..++++|+.+.
T Consensus 18 ~~~~~~~i~~L~~~L~~---~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDD---HNSLKRISSARVLQLRGG----------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHTSCHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSC
T ss_pred HHHHHhhHHHHHHHHHc---CCHHHHHHHHHHHHccCC----------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhc
Confidence 34567889999999987 478888889998887642 235788999997 457899999999999874
Q ss_pred cCChhhHHHHHHcCcHHHHHH-HHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533 248 TGNEVVKESYMELKIDELILE-ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326 (508)
Q Consensus 248 ~~~e~nr~~i~~~G~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d 326 (508)
...+... ..++.|.. +++..+..+...++++|..+...+.. + ....++.|+.+|.+ .+
T Consensus 83 ~~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---------~-----~~~~~~~L~~~l~d-~~ 141 (280)
T 1oyz_A 83 ICKKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI---------Y-----SPKIVEQSQITAFD-KS 141 (280)
T ss_dssp CCTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG---------G-----HHHHHHHHHHHTTC-SC
T ss_pred cccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc---------c-----cHHHHHHHHHHhhC-CC
Confidence 3222111 12334443 33444557888899999988632210 0 11357888888875 46
Q ss_pred hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHH
Q 010533 327 SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV 406 (508)
Q Consensus 327 ~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~ 406 (508)
+.+...++.+|+++.. .+.++.|+.++.+. +..|...++.+|..+...+ ...++.|+.
T Consensus 142 ~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~ 199 (280)
T 1oyz_A 142 TNVRRATAFAISVIND----------KATIPLLINLLKDP----NGDVRNWAAFAININKYDN--------SDIRDCFVE 199 (280)
T ss_dssp HHHHHHHHHHHHTC-------------CCHHHHHHHHTCS----SHHHHHHHHHHHHHHTCCC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC----CHHHHHHHHHHHHhhccCc--------HHHHHHHHH
Confidence 8888999999987754 24789999999753 3489999999999984322 135688999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHH
Q 010533 407 VSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSV 484 (508)
Q Consensus 407 lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~ 484 (508)
+|. .+++.++..++.+|..+. + ...++.|+.+++. +.|+..|.++|..+. .++....+.
T Consensus 200 ~l~--d~~~~vR~~A~~aL~~~~--~---------~~~~~~L~~~l~d----~~vr~~a~~aL~~i~--~~~~~~~L~ 258 (280)
T 1oyz_A 200 MLQ--DKNEEVRIEAIIGLSYRK--D---------KRVLSVLCDELKK----NTVYDDIIEAAGELG--DKTLLPVLD 258 (280)
T ss_dssp HTT--CSCHHHHHHHHHHHHHTT--C---------GGGHHHHHHHHTS----SSCCHHHHHHHHHHC--CGGGHHHHH
T ss_pred Hhc--CCCHHHHHHHHHHHHHhC--C---------HhhHHHHHHHhcC----ccHHHHHHHHHHhcC--chhhhHHHH
Confidence 997 668999999999999986 2 3478888888854 237888999999874 455555554
No 45
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.96 E-value=4.3e-09 Score=116.78 Aligned_cols=172 Identities=10% Similarity=0.039 Sum_probs=141.8
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH-HHhccCCCCcHHHHHHHHHHHHHhh--CC
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLA--GS 388 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~-lL~~~~~~~~~~v~~~al~aL~~La--~~ 388 (508)
+.|.|+++.|++ +++..+..+|++|++|+.+++..+.+...|+|..++. +|.+. +.+|+.+|+++|+||+ +.
T Consensus 34 ~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~----~~~Vr~~A~gaLrnL~~~~g 108 (684)
T 4gmo_A 34 DKILPVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN----NIDSRAAGWEILKVLAQEEE 108 (684)
T ss_dssp HTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS----CHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC----CHHHHHHHHHHHHHHHhhcC
Confidence 356677788886 4778899999999999998888888999999987665 56543 3589999999999998 45
Q ss_pred chhHHHHHhCCcHHHHHHHHhccCC------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 010533 389 DSNKSAIIENGGMDKLIVVSARFSD------------D-------ASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAI 449 (508)
Q Consensus 389 ~~~k~~Iv~~Ggl~~Lv~lL~~~~~------------~-------~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv 449 (508)
++....+++.|++++|..++++... . ..+.++++.+|.+||..+.+....+...|+++.|+
T Consensus 109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHH
Confidence 6888999999999999999863211 0 13667899999999988888888999999999999
Q ss_pred HHHHc-CCCcHHHHHHHHHHHHHhhhcCccchHHHHhccc
Q 010533 450 QAMLK-FPNAQQLQRSSCFMIRNLVARNPENSFCSVMVSR 488 (508)
Q Consensus 450 ~~L~~-h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g~ 488 (508)
..|.. ......++..|+.+|.+++..|++....+.+.|.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 98843 3344679999999999999999999999988764
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.91 E-value=7.7e-08 Score=89.93 Aligned_cols=188 Identities=11% Similarity=0.093 Sum_probs=145.8
Q ss_pred cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcch
Q 010533 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ 295 (508)
Q Consensus 216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r 295 (508)
.+.++.|++.|. ..+..++..+++.|+.+.. .++++.|+.+|.+.+..+...++++|..+..
T Consensus 18 ~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----
T ss_pred HhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 457889999997 4689999999999987632 2578999999998766888889999887641
Q ss_pred hhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533 296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (508)
Q Consensus 296 ~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~ 375 (508)
.++++.|+.+|.+ +++.+...++.+|+.+... +.++.|+.+|.+. +..|.
T Consensus 80 ---------------~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~----~~~vr 129 (211)
T 3ltm_A 80 ---------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDE----DWFVR 129 (211)
T ss_dssp ---------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCS----SHHHH
T ss_pred ---------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCC----CHHHH
Confidence 2468999999876 4678889999999887642 4678899988652 45899
Q ss_pred HHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533 376 RICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455 (508)
Q Consensus 376 ~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h 455 (508)
..++.+|+.+.. ...++.|+.+|. ..++.|+..++.+|..+. ++ ..++.|.++++.
T Consensus 130 ~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d- 185 (211)
T 3ltm_A 130 IAAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAET- 185 (211)
T ss_dssp HHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhC-
Confidence 999999999843 247899999997 668999999999999985 22 356778888875
Q ss_pred CCcHHHHHHHHHHHHHhhhcC
Q 010533 456 PNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 456 ~~~~~vq~~A~~aL~nL~~~~ 476 (508)
.++.|++.|..+|.++...+
T Consensus 186 -~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 186 -GTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp -CCHHHHHHHHHHHHC-----
T ss_pred -CCHHHHHHHHHHHHhcCCCC
Confidence 46889999999999987543
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.90 E-value=6.2e-08 Score=90.56 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=146.3
Q ss_pred CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (508)
Q Consensus 172 ~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e 251 (508)
.+.+|.|+.+|++ ++..++..|+..|..+.. .++++.|+++|.+ ++..++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~--- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQD---DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIGD--- 79 (211)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC---
T ss_pred HhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC---
Confidence 4579999999986 478899889888887543 3578999999974 589999999999988631
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (508)
Q Consensus 252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~ 331 (508)
.++++.|+.+|.+.+..+...|+++|..+.. .+.++.|+.+|.+ +++.+..
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~ 130 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI 130 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHH
Confidence 2568899999988777888889999987742 2468899998865 4678999
Q ss_pred HHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc
Q 010533 332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (508)
Q Consensus 332 ~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~ 411 (508)
.++.+|+++... ..++.|+.++.+. +..|...++.+|..+.. ..+++.|..++.
T Consensus 131 ~a~~aL~~~~~~----------~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-- 184 (211)
T 3ltm_A 131 AAAFALGEIGDE----------RAVEPLIKALKDE----DGWVRQSAADALGEIGG----------ERVRAAMEKLAE-- 184 (211)
T ss_dssp HHHHHHHHHCCG----------GGHHHHHHHTTCS----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCH----------HHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--
Confidence 999999888532 3678899988652 35899999999999843 246788999998
Q ss_pred CCCHHHHHHHHHHHHHHhcC
Q 010533 412 SDDASVLQEVMSIITVLSLR 431 (508)
Q Consensus 412 ~~~~~v~e~a~~aL~~La~~ 431 (508)
.+++.|+..|..+|..+...
T Consensus 185 d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 185 TGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HCCHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 56899999999999998753
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.85 E-value=1.2e-07 Score=87.76 Aligned_cols=185 Identities=11% Similarity=0.094 Sum_probs=145.6
Q ss_pred cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcch
Q 010533 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ 295 (508)
Q Consensus 216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r 295 (508)
.+..+.+++.|. +++..++..++++|..+.. .+.++.|+..|.+.+..+...|+++|..+..
T Consensus 13 ~~~~~~~i~~L~--~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred CcchHHHHHHhc--CCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 456788888997 4689999999999987631 2568999999987666788888888887641
Q ss_pred hhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHH
Q 010533 296 VVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (508)
Q Consensus 296 ~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~ 375 (508)
..+++.|+.+|.+ .++.+...++++|+.+... ..++.|+.+|.+. +..|+
T Consensus 75 ---------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~----~~~vr 124 (201)
T 3ltj_A 75 ---------------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDE----DWFVR 124 (201)
T ss_dssp ---------------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCS----SHHHH
T ss_pred ---------------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCC----CHHHH
Confidence 2468999999876 4788999999999887542 3678888888652 45899
Q ss_pred HHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcC
Q 010533 376 RICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKF 455 (508)
Q Consensus 376 ~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h 455 (508)
..++.+|+.+.. .+.++.|+.++. ..++.|+..++.+|..+. +++ .++.|.+++..
T Consensus 125 ~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d- 180 (201)
T 3ltj_A 125 IAAAFALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIG--GER---------VRAAMEKLAET- 180 (201)
T ss_dssp HHHHHHHHHHTC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHH-
T ss_pred HHHHHHHHHhCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhC-
Confidence 999999999853 357899999998 668999999999999984 332 56778888865
Q ss_pred CCcHHHHHHHHHHHHHhh
Q 010533 456 PNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 456 ~~~~~vq~~A~~aL~nL~ 473 (508)
.++.|+..|..+|..+-
T Consensus 181 -~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 181 -GTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CCHHHHHHHHHHHHHCC
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 46889999999998864
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.83 E-value=1.1e-07 Score=88.03 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=145.5
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~ 252 (508)
+..+.++.+|++ ++..++..|+.+|..+-. .+.++.|+++|. .++..++..++++|+.+. .
T Consensus 14 ~~~~~~i~~L~~---~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~--~-- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQD---DSYYVRRAAAYALGKIGD----------ERAVEPLIKALK--DEDAWVRRAAADALGQIG--D-- 74 (201)
T ss_dssp HHHHHHHHHTTC---SCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC--C--
T ss_pred cchHHHHHHhcC---CCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhC--C--
Confidence 568899999988 478899889998886543 246899999996 458899999999998863 1
Q ss_pred hHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHH
Q 010533 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (508)
Q Consensus 253 nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~ 332 (508)
..+++.|+.+|...+..+...|+++|..+.. ..+++.|+.+|.+ +++.+...
T Consensus 75 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~~ 126 (201)
T 3ltj_A 75 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRIA 126 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHcC-CCHHHHHH
Confidence 2468899999988777888889999987642 1468889998865 46788999
Q ss_pred HHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccC
Q 010533 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFS 412 (508)
Q Consensus 333 a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~ 412 (508)
++++|+.+.. .+.++.|+.++.+. +..+...++.+|+.+.. ..+++.|..++. .
T Consensus 127 a~~aL~~~~~----------~~~~~~L~~~l~d~----~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~--d 180 (201)
T 3ltj_A 127 AAFALGEIGD----------ERAVEPLIKALKDE----DGWVRQSAADALGEIGG----------ERVRAAMEKLAE--T 180 (201)
T ss_dssp HHHHHHHHTC----------GGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHH--H
T ss_pred HHHHHHHhCC----------HHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHh--C
Confidence 9999988853 24678889888752 45899999999999832 236788999997 5
Q ss_pred CCHHHHHHHHHHHHHHh
Q 010533 413 DDASVLQEVMSIITVLS 429 (508)
Q Consensus 413 ~~~~v~e~a~~aL~~La 429 (508)
.++.|+..|..+|..|.
T Consensus 181 ~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 181 GTGFARKVAVNYLETHK 197 (201)
T ss_dssp CCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 68999999999998874
No 50
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=4.4e-07 Score=98.82 Aligned_cols=303 Identities=12% Similarity=0.067 Sum_probs=191.2
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
..+..+...+.+. +..-.+.|+..+.++++. +++ .+.+.+.+|.|..+|.. .+..++..|+.+|.
T Consensus 121 ~l~~~l~~~L~d~-------~~~VRk~A~~al~~i~~~--~p~---~~~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 121 YLCEPLRKCLKDE-------DPYVRKTAAVCVAKLHDI--NAQ---MVEDQGFLDSLRDLIAD---SNPMVVANAVAALS 185 (591)
T ss_dssp HHHHHHHHHSSCS-------CHHHHHHHHHHHHHHHHS--SCC---CHHHHHHHHHHHHTTSC---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhh--Chh---hcccccHHHHHHHHhCC---CChhHHHHHHHHHH
Confidence 3455566666654 677778899999999876 554 33345788999999976 47899999999999
Q ss_pred HhhcCCcchh-HHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHH
Q 010533 202 LLVHDVQSTE-TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 202 ~l~~~~~~~~-~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~ 280 (508)
.+..+..... .-...+.+..|+..|.. .++..+...+++++.++...+.... ..++.+...|++.+..++.+
T Consensus 186 ~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~e 258 (591)
T 2vgl_B 186 EISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLS 258 (591)
T ss_dssp HHTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHH
T ss_pred HHHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHH
Confidence 9876542110 00112335667777753 4688888899999888655443322 34667777777766688999
Q ss_pred HHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHHHH
Q 010533 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDAL 359 (508)
Q Consensus 281 A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~~L 359 (508)
|++++..+...-.. ..+..+.+. ....++|+.++. ++++++..++.+|..+... ++.... -+..+
T Consensus 259 a~~~i~~l~~~~~~------~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~ 324 (591)
T 2vgl_B 259 AVKVLMKFLELLPK------DSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVF 324 (591)
T ss_dssp HHHHHHHSCCSCCB------TTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTT
T ss_pred HHHHHHHHhhccCC------CHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhh
Confidence 99999998631100 011122232 245688887664 4788888888888888752 221111 11111
Q ss_pred HHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010533 360 LRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARA 439 (508)
Q Consensus 360 v~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i 439 (508)
+... ++ +..|...++.+|..++.. .|...| ++.|...+. ..+..++..++++|..++.+.+.....
T Consensus 325 ---~~~~-~d-~~~Ir~~al~~L~~l~~~-~nv~~i-----v~~L~~~l~--~~d~~~r~~~v~aI~~la~~~~~~~~~- 390 (591)
T 2vgl_B 325 ---FVKY-ND-PIYVKLEKLDIMIRLASQ-ANIAQV-----LAELKEYAT--EVDVDFVRKAVRAIGRCAIKVEQSAER- 390 (591)
T ss_dssp ---SCCT-TS-CHHHHHHHHHHHHHTCCS-STHHHH-----HHHHHHHTT--SSCHHHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred ---eecc-CC-hHHHHHHHHHHHHHHCCh-hhHHHH-----HHHHHHHHh--cCCHHHHHHHHHHHHHHHHhChhHHHH-
Confidence 1111 11 247888888888887643 333322 344556665 456788888888888888776654433
Q ss_pred HhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533 440 MEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 440 ~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
.++.|++++... ...+..++..+|+++..++|+.+
T Consensus 391 ----~v~~Ll~ll~~~--~~~v~~e~i~~l~~ii~~~p~~~ 425 (591)
T 2vgl_B 391 ----CVSTLLDLIQTK--VNYVVQEAIVVIRDIFRKYPNKY 425 (591)
T ss_dssp ----HHHHHHHHHHTC--CHHHHHHHHHHHHHHHHHSCSSC
T ss_pred ----HHHHHHHHHccc--chHHHHHHHHHHHHHHHHCcchH
Confidence 456777777532 34555666677777776666643
No 51
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.71 E-value=5.3e-07 Score=102.16 Aligned_cols=319 Identities=15% Similarity=0.090 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc-hhHHHhcCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~-~~~i~~~ggi~ 220 (508)
+......++..|..++.. ... ...-.-.+.+|.|+.+|++ .+..++..|++++..++..... .....-.+.++
T Consensus 372 ~~~~R~aa~~alg~i~~~--~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 445 (852)
T 4fdd_A 372 EWVVKESGILVLGAIAEG--CMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445 (852)
T ss_dssp SHHHHHHHHHHHHHTTTT--THH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc--chH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 455566677777777764 221 1111124567888888865 4678888888888877643210 00111224567
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhc-----------
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL----------- 289 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~----------- 289 (508)
.+++.|.. ++..++..++++|.+++......-..+. .+.++.|+..++.........+..++..++
T Consensus 446 ~L~~~L~d--~~~~vr~~a~~aL~~l~~~~~~~l~~~l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~ 522 (852)
T 4fdd_A 446 ELLKRILD--SNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE 522 (852)
T ss_dssp HHHHHHTC--SSHHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHH
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHHHHHHhhHhhHhHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHH
Confidence 77777753 4789999999999998743221111111 256777777777654432222223333222
Q ss_pred ----------------CCCcchhhhhhcchHHHHHHh---cC-------CHHHHHHHHhcC----------------CCh
Q 010533 290 ----------------TPDDDQVVASQVYGYARRFAK---IG-------IARALVHSLHAG----------------LSS 327 (508)
Q Consensus 290 ----------------~~dd~r~~~~~a~~~~~~i~~---~g-------~i~~Lv~lL~~~----------------~d~ 327 (508)
.+++.... ...+....++. .+ .++.++++++.. .+.
T Consensus 523 ~~~~l~p~l~~~~~~l~d~~~~~~--~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~ 600 (852)
T 4fdd_A 523 YIQMLMPPLIQKWNMLKDEDKDLF--PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 600 (852)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHH--HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT
T ss_pred HHHHHHHHHHHHHHhcccccHHHH--HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc
Confidence 12221110 00111111111 11 123344444321 145
Q ss_pred hHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-Cc-hhHHHHHhCCcHHH
Q 010533 328 PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SD-SNKSAIIENGGMDK 403 (508)
Q Consensus 328 ~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~-~~k~~Iv~~Ggl~~ 403 (508)
+.+..++.+|+.++. ..+....+.+.+.++.++.++.+. +.+++..++.+|+.++. .+ ..+..+- ..+|.
T Consensus 601 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~----~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~ 674 (852)
T 4fdd_A 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK----MPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPI 674 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS----SHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC----ChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHH
Confidence 577777888888875 344444454667888888888652 34899999999999973 22 2222222 25677
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccch
Q 010533 404 LIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 404 Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
++..|. .+++.++.+|++++..++..-.+.....+ ...++.|+.+++.......++++++.+|..|+.++|+..
T Consensus 675 l~~~l~--~~~~~v~~~a~~alg~i~~~~~~~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 675 LGTNLN--PEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp HHHTCC--TTSHHHHHHHHHHHHHHHHHHGGGGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHcC--ccchHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence 777775 56789999999999999854333322222 356788888886433346789999999999998877644
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.61 E-value=2.5e-07 Score=96.08 Aligned_cols=283 Identities=6% Similarity=-0.013 Sum_probs=170.4
Q ss_pred CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (508)
Q Consensus 172 ~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~ 248 (508)
.+.+|.|+..+.+.. .+..+...++.+|..++.+.. ..+.. ...++.++.+|.....+..++..+++++.++..
T Consensus 127 ~~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCC--chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 357888888887631 166777788888888875321 11111 235677777776432268999999999998653
Q ss_pred CChhhHH-HHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh
Q 010533 249 GNEVVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327 (508)
Q Consensus 249 ~~e~nr~-~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~ 327 (508)
.-+.+-. .....-.++.|...+...+.++...++++|..+....... +. ++.. .+.++.++..+++ .++
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~---~~~~----~~l~~~~~~~~~~-~~~ 273 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY--ME---TYMG----PALFAITIEAMKS-DID 273 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG--CT---TTTT----TTHHHHHHHHHHC-SSH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH--HH---HHHH----HHHHHHHHHHHcC-Cch
Confidence 2221110 0001113455555555555578888999998887322110 00 1111 1446666677765 356
Q ss_pred hHHHHHHHHHHHhhcChhh------------------HhHHhh---cCCHHHHHHHHhccC---CCCcHHHHHHHHHHHH
Q 010533 328 PSLISASIALKAVAVNDEI------------------CKSVAE---NGGIDALLRCIDDSG---LQGNKTVARICCSLLS 383 (508)
Q Consensus 328 ~~~~~a~~aL~~La~~~e~------------------~~~i~e---~Ggi~~Lv~lL~~~~---~~~~~~v~~~al~aL~ 383 (508)
.+...++..+..++..... +..+.+ ...++.+++.|.+.. ++.+..+...|+.+|.
T Consensus 274 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~ 353 (462)
T 1ibr_B 274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM 353 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHH
Confidence 7778888877777653210 011111 123566666675421 1112368889999999
Q ss_pred HhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533 384 KLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462 (508)
Q Consensus 384 ~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq 462 (508)
.|+..-. . .+.. ..++.+...|. ..+..+++.|+.+|..++.+.. +.....+ ...++.++.+|.. .++.|+
T Consensus 354 ~l~~~~~-~-~~~~-~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d--~~~~Vr 425 (462)
T 1ibr_B 354 LLATCCE-D-DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVVVR 425 (462)
T ss_dssp HHHHHTT-T-THHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGC--SCHHHH
T ss_pred HHHHhcc-H-HHHH-HHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcC--CCHHHH
Confidence 9874221 1 1221 34567777776 5679999999999999996433 2111111 4578889998853 468999
Q ss_pred HHHHHHHHHhhhc
Q 010533 463 RSSCFMIRNLVAR 475 (508)
Q Consensus 463 ~~A~~aL~nL~~~ 475 (508)
..|||+|.+++..
T Consensus 426 ~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 426 DTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.55 E-value=5.9e-06 Score=90.43 Aligned_cols=263 Identities=12% Similarity=0.092 Sum_probs=168.5
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcC-------------CCCHHHHHH
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDG-------------NEDPEILNS 238 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~-------------~~~~~v~~~ 238 (508)
+.++.|..+|.. .+..++..|+.+|..+...++.. ..+ ...++.++++|... ..++..+..
T Consensus 179 ~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 179 MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 455555666654 46788888888888887543111 112 25688888888641 347899999
Q ss_pred HHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC
Q 010533 239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQ------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (508)
Q Consensus 239 a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g 312 (508)
.+++|+.++..++...+ ..++.|..+++.. +..++.++++++..+..+. .+.+ .
T Consensus 254 il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~--------------~l~~-~ 313 (618)
T 1w63_A 254 ILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES--------------GLRV-L 313 (618)
T ss_dssp HHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH--------------HHHH-H
T ss_pred HHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH--------------HHHH-H
Confidence 99999999866554332 3455666666421 1267778888888875311 1111 3
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (508)
++..|..+|.+ .+++++.-+..+|..++.... .++. .....++.++.+. +..|...++.+|..|+.... .
T Consensus 314 a~~~L~~~L~~-~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d~----d~~Ir~~alelL~~l~~~~n-v 383 (618)
T 1w63_A 314 AINILGRFLLN-NDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKDL----DVSIKRRAMELSFALVNGNN-I 383 (618)
T ss_dssp HHHHHHHHHTC-SSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGSS----CHHHHHHHHHHHHHHCCSSS-T
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccCC----ChhHHHHHHHHHHHHccccc-H
Confidence 57888888876 367788888888888886422 1221 1345677777652 35899999999999986433 3
Q ss_pred HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 010533 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
..| ++.|+..+. ..+..++..++.+|..+|.+.+...... ++.++++++... ..++..+...++.+
T Consensus 384 ~~i-----v~eL~~~l~--~~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~--~~v~~~~~~~l~~i 449 (618)
T 1w63_A 384 RGM-----MKELLYFLD--SCEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAG--SYVRDDAVPNLIQL 449 (618)
T ss_dssp HHH-----HHHHHHHHH--HCCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTG--GGSCSSHHHHHHHH
T ss_pred HHH-----HHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 333 367777777 5678999999999999998764443332 455666665431 22333445556666
Q ss_pred hhcCccchHHHH
Q 010533 473 VARNPENSFCSV 484 (508)
Q Consensus 473 ~~~~~e~~~~~~ 484 (508)
..++|+.+...+
T Consensus 450 i~~~p~l~~~~v 461 (618)
T 1w63_A 450 ITNSVEMHAYTV 461 (618)
T ss_dssp HHHSCSTHHHHH
T ss_pred HhcChhHHHHHH
Confidence 655666554433
No 54
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.52 E-value=1.9e-05 Score=85.80 Aligned_cols=294 Identities=12% Similarity=0.088 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~ 221 (508)
+.+..+-+.-.+..+++. +++.. .-+++.|..-|++ +++.++..|+.+|+.+... .+. ...++.
T Consensus 62 ~~~~Krl~yl~l~~~~~~--~~e~~-----~l~~n~l~kdL~~---~n~~ir~~AL~~L~~i~~~-----~~~-~~l~~~ 125 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKS--QPDMA-----IMAVNSFVKDCED---PNPLIRALAVRTMGCIRVD-----KIT-EYLCEP 125 (591)
T ss_dssp CHHHHHHHHHHHHHHHHH--SHHHH-----HTTHHHHGGGSSS---SSHHHHHHHHHHHHTCCSG-----GGH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHccc--CchHH-----HHHHHHHHHHcCC---CCHHHHHHHHHHHHcCChH-----HHH-HHHHHH
Confidence 444444444455555543 34321 1134555555554 4778888899998887532 111 123566
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a 301 (508)
+.++|. +.++.|+..|+.++..++..+++ .+.+.+.++.|..+|...+..++.+|.++|..++.++.....+
T Consensus 126 l~~~L~--d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~--- 197 (591)
T 2vgl_B 126 LRKCLK--DEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL--- 197 (591)
T ss_dssp HHHHSS--CSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC---
T ss_pred HHHHcC--CCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch---
Confidence 778886 46899999999999999776554 2233577899999998766689999999999998654211000
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChh-hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (508)
Q Consensus 302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e-~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~ 380 (508)
. + ..+.+..|+..+... ++-.+..+..+|..++..++ .... .++.+..+|++. +..|+-+|+.
T Consensus 198 -~----l-~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l~~~----~~~V~~ea~~ 261 (591)
T 2vgl_B 198 -D----L-NPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRLSHA----NSAVVLSAVK 261 (591)
T ss_dssp -C----C-HHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCSCSS----TTHHHHHHHH
T ss_pred -h----c-cHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHHcCC----ChHHHHHHHH
Confidence 0 0 113356677777654 56566677777777775322 2221 244555555532 3489999999
Q ss_pred HHHHhhC----CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh------------------HHH
Q 010533 381 LLSKLAG----SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN------------------AAR 438 (508)
Q Consensus 381 aL~~La~----~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~------------------~~~ 438 (508)
+|..+.. +++....++. ...+.|+.++. +++.++..|+.+|..++..+|+. +..
T Consensus 262 ~i~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~---~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~ 337 (591)
T 2vgl_B 262 VLMKFLELLPKDSDYYNMLLK-KLAPPLVTLLS---GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLE 337 (591)
T ss_dssp HHHHSCCSCCBTTBSHHHHHH-HTHHHHHHHTT---SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHH-HHHHHHHHHhc---CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHH
Confidence 9999863 3344443332 34567776653 46788888888888776433321 111
Q ss_pred HH-------hcCcHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhhcCccc
Q 010533 439 AM-------EAGSGDLAIQAMLKF--PNAQQLQRSSCFMIRNLVARNPEN 479 (508)
Q Consensus 439 i~-------~~G~i~~Lv~~L~~h--~~~~~vq~~A~~aL~nL~~~~~e~ 479 (508)
.+ ....+..++.-|..+ ..+..+++.++++|.+++.+.+..
T Consensus 338 al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~ 387 (591)
T 2vgl_B 338 KLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS 387 (591)
T ss_dssp HHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH
Confidence 11 122233333333222 246788899999999998776543
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.49 E-value=9.9e-06 Score=91.17 Aligned_cols=314 Identities=10% Similarity=0.030 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCCh
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGP 219 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~ggi 219 (508)
+......++..|..+|.. -+++. ..-.-...+|.++..+.... .+.+++..+++++..++..-... ........+
T Consensus 143 ~~~~r~~al~~l~~l~~~-~~~~~-~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il 219 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQD-IDPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219 (876)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-cCHhh-HHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345556678888888753 01111 00001234555666665431 25678888888888776421100 000011134
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCc------
Q 010533 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD------ 293 (508)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd------ 293 (508)
+.+..++. ..+.+++..++++|..++......-...+....++.++..+...++.+...++..+..++....
T Consensus 220 ~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 220 QVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 44555543 4578899999999999876554332233344678888888876666778888888887763210
Q ss_pred -chh-----hhhhcchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH
Q 010533 294 -DQV-----VASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (508)
Q Consensus 294 -~r~-----~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~ 361 (508)
... +......+.+... ...++.++..|.... +..+...+..+|..++..-. ..++. ..++.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~ 373 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKE 373 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHH
Confidence 000 0000111222222 134778888886421 23566777778877765321 11111 12333444
Q ss_pred HHhccCCCCcHHHHHHHHHHHHHhhCCc--hhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhH--H
Q 010533 362 CIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENA--A 437 (508)
Q Consensus 362 lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~--~ 437 (508)
.+.+ .++.++..++.+|+.++... +.-.... ...+|.|+..|. ..++.|+..|+++|.+++...+... .
T Consensus 374 ~l~~----~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 374 HIKN----PDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HTTC----SSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HccC----CChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 4432 35689999999999998542 2222222 246889999997 5679999999999999996533210 0
Q ss_pred HHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 438 RAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 438 ~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
..+ ...++.++..|.. ++.|+..+||+|.+++..
T Consensus 447 ~~l-~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 447 VYL-APLLQCLIEGLSA---EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp TTH-HHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHH
Confidence 111 1345667777743 378999999999999853
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.49 E-value=9.7e-06 Score=86.72 Aligned_cols=292 Identities=10% Similarity=-0.007 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHH
Q 010533 143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLL 222 (508)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~L 222 (508)
.+....++..|..++..- ++..+....-...+|.+..++++ .+..++..++++|..+...-. ........+|.+
T Consensus 295 ~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~l~p~l~~~l~d---~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~p~l 368 (588)
T 1b3u_A 295 AEVRAAASHKVKEFCENL-SADCRENVIMSQILPCIKELVSD---ANQHVKSALASVIMGLSPILG--KDNTIEHLLPLF 368 (588)
T ss_dssp HHHHHHHHHHHHHHHHTS-CTTTHHHHHHHTHHHHHHHHHTC---SCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-ChhhhhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh--HhHHHHHHHHHH
Confidence 344444555555555430 11111111223467788887766 367787777777776653211 122223467788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcc
Q 010533 223 VNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVY 302 (508)
Q Consensus 223 v~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~ 302 (508)
..+|. .++.+++..++.++..++..... .. .....+|.|..++...+..++..++.+|..++.. ++..
T Consensus 369 ~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~--~~-~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~------~~~~- 436 (588)
T 1b3u_A 369 LAQLK--DECPEVRLNIISNLDCVNEVIGI--RQ-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ------LGVE- 436 (588)
T ss_dssp HHHHT--CSCHHHHHHHHTTCHHHHHHSCH--HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH------HCGG-
T ss_pred HHHhC--CCchHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH------cCHH-
Confidence 88886 35789999998888777542221 11 1234678888888765557777888888877621 0000
Q ss_pred hHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533 303 GYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (508)
Q Consensus 303 ~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL 382 (508)
+.....++.++.+|.+. +..+...++.+|+.++..-... ..-...++.|+.++.+ ++..++..++.+|
T Consensus 437 -----~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~----~~~~~R~~a~~~l 504 (588)
T 1b3u_A 437 -----FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGD----PNYLHRMTTLFCI 504 (588)
T ss_dssp -----GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTC----SCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhC----CCHHHHHHHHHHH
Confidence 00112467788877653 5678889999998887532111 1112345666665543 2458899999999
Q ss_pred HHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHH
Q 010533 383 SKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQ 462 (508)
Q Consensus 383 ~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq 462 (508)
..++..-.. .......+|.|+.++. ..++.|+..++.+|..++..-.. ........+.|.+++. ..+..|+
T Consensus 505 ~~l~~~~~~--~~~~~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~~p~l~~l~~--d~d~~vr 575 (588)
T 1b3u_A 505 NVLSEVCGQ--DITTKHMLPTVLRMAG--DPVANVRFNVAKSLQKIGPILDN---STLQSEVKPILEKLTQ--DQDVDVK 575 (588)
T ss_dssp HHHHHHHHH--HHHHHHTHHHHHHGGG--CSCHHHHHHHHHHHHHHGGGSCH---HHHHHHHHHHHHHHTT--CSSHHHH
T ss_pred HHHHHhcCH--HHHHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHhch---hhhHHHHHHHHHHHcC--CCchhHH
Confidence 998742111 1122356788888887 56799999999999999853221 1222334566666542 3578999
Q ss_pred HHHHHHHHHhh
Q 010533 463 RSSCFMIRNLV 473 (508)
Q Consensus 463 ~~A~~aL~nL~ 473 (508)
..|+.||..+.
T Consensus 576 ~~a~~al~~l~ 586 (588)
T 1b3u_A 576 YFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998763
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.45 E-value=3.4e-05 Score=84.38 Aligned_cols=291 Identities=11% Similarity=0.044 Sum_probs=190.1
Q ss_pred HHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHH
Q 010533 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (508)
Q Consensus 123 ~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~ 202 (508)
++..|..-+.+. +.....-|++.|..+.. ++ +. ...+|.+..+|++ .++.+...|+.++..
T Consensus 108 ~in~l~kDL~~~-------n~~vr~lAL~~L~~i~~----~~----~~-~~l~~~l~~~L~~---~~~~VRk~A~~al~~ 168 (618)
T 1w63_A 108 MTNCIKNDLNHS-------TQFVQGLALCTLGCMGS----SE----MC-RDLAGEVEKLLKT---SNSYLRKKAALCAVH 168 (618)
T ss_dssp HHHHHHHHHSCS-------SSHHHHHHHHHHHHHCC----HH----HH-HHHHHHHHHHHHS---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-------CHhHHHHHHHHHHhcCC----HH----HH-HHHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 445555554443 44444555555555532 21 11 2457888888877 478899999999988
Q ss_pred hhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc----------
Q 010533 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR---------- 272 (508)
Q Consensus 203 l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~---------- 272 (508)
+.... ++.+. +.++.+.++|. ..++.|+..|+.+|..++..+++....+. ..++.++.+|..
T Consensus 169 l~~~~---p~~v~-~~~~~l~~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~ 240 (618)
T 1w63_A 169 VIRKV---PELME-MFLPATKNLLN--EKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEH 240 (618)
T ss_dssp HHHHC---GGGGG-GGGGGTTTSTT--CCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHC---hHHHH-HHHHHHHHHhC--CCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccc
Confidence 87543 22222 45666666775 45789999999999999765443322332 678889888874
Q ss_pred -----CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcC-----CChhHHHHHHHHHHHhhc
Q 010533 273 -----QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG-----LSSPSLISASIALKAVAV 342 (508)
Q Consensus 273 -----~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~-----~d~~~~~~a~~aL~~La~ 342 (508)
.++-.+.....+|..++..|.. . ....++.|..+++.. .+..++..++.++..+..
T Consensus 241 ~~~~~~~~~~q~~il~~L~~l~~~~~~-------------~-~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~ 306 (618)
T 1w63_A 241 DVSGISDPFLQVRILRLLRILGRNDDD-------------S-SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS 306 (618)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHTTTCHH-------------H-HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC
T ss_pred cccCCCCChHHHHHHHHHHHhCCCCHH-------------H-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC
Confidence 1334455567778888765411 1 113456666666431 124678888899888765
Q ss_pred ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH
Q 010533 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM 422 (508)
Q Consensus 343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~ 422 (508)
.++... .++..|..++.+. + ..++..++.+|..++... .. ++. ...+.++.++. .++..|+..+.
T Consensus 307 ~~~l~~-----~a~~~L~~~L~~~-d---~~vr~~aL~~L~~i~~~~--p~-~~~-~~~~~i~~~l~--d~d~~Ir~~al 371 (618)
T 1w63_A 307 ESGLRV-----LAINILGRFLLNN-D---KNIRYVALTSLLKTVQTD--HN-AVQ-RHRSTIVDCLK--DLDVSIKRRAM 371 (618)
T ss_dssp CHHHHH-----HHHHHHHHHHTCS-S---TTTHHHHHHHHHHHHHHH--HH-HHG-GGHHHHHHGGG--SSCHHHHHHHH
T ss_pred CHHHHH-----HHHHHHHHHHhCC-C---CchHHHHHHHHHHHHhhC--HH-HHH-HHHHHHHHHcc--CCChhHHHHHH
Confidence 443222 3567888888753 2 278889999999987531 11 222 35678888887 67899999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 423 SIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 423 ~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
.+|..|+. ++|...++ ..+.+.+.. .+..+++.+..+|..++.+.+.
T Consensus 372 elL~~l~~--~~nv~~iv-----~eL~~~l~~--~d~e~r~~~v~~I~~la~k~~~ 418 (618)
T 1w63_A 372 ELSFALVN--GNNIRGMM-----KELLYFLDS--CEPEFKADCASGIFLAAEKYAP 418 (618)
T ss_dssp HHHHHHCC--SSSTHHHH-----HHHHHHHHH--CCHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHcc--cccHHHHH-----HHHHHHHHh--CCHHHHHHHHHHHHHHHHHhCc
Confidence 99999984 45555553 566677754 4678999999999999986533
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.39 E-value=2.9e-05 Score=82.93 Aligned_cols=288 Identities=10% Similarity=0.016 Sum_probs=175.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~ 221 (508)
+......|...|.+++.. .+.. ....-.+|.+..+..+ ++......+...+..+..... .......++.
T Consensus 100 ~~~vR~~a~~~L~~l~~~--~~~~---~~~~~l~~~l~~l~~~---~~~~~R~~a~~~l~~~~~~~~---~~~~~~l~~~ 168 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHE--HSPS---DLEAHFVPLVKRLAGG---DWFTSRTSACGLFSVCYPRVS---SAVKAELRQY 168 (588)
T ss_dssp CHHHHHHHHHHHHHHHTT--SCHH---HHHHTHHHHHHHHHTC---SSHHHHHHHGGGHHHHTTTSC---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--CCHH---HHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 566667788889998875 3322 1223356777676654 356667677777776654321 1122234566
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhc
Q 010533 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (508)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a 301 (508)
+..++. .++..++..++.+|+.++..... .......++.+..+++..+..+...|+.+|..++..-..
T Consensus 169 l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------- 236 (588)
T 1b3u_A 169 FRNLCS--DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ------- 236 (588)
T ss_dssp HHHHHT--CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH-------
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH-------
Confidence 666665 45899999999999998754332 122346788888888776667777788888877632110
Q ss_pred chHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 302 ~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
..+ ....++.+..++.+ .+..+...++.+|..++.. ++. .....++.++.++.+. +.+++..++
T Consensus 237 ----~~~-~~~~~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~----~~~vr~~a~ 302 (588)
T 1b3u_A 237 ----EDL-EALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVGPEI----TKTDLVPAFQNLMKDC----EAEVRAAAS 302 (588)
T ss_dssp ----HHH-HHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHCHHH----HHHTHHHHHHHHHTCS----SHHHHHHHH
T ss_pred ----HHH-HHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHhCccc----chhHHHHHHHHHhCCC----cHHHHHHHH
Confidence 011 12467778787764 3567888999999888752 221 1223478888888752 358999999
Q ss_pred HHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC
Q 010533 380 SLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN 457 (508)
Q Consensus 380 ~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~ 457 (508)
.+|..++.. ++.+....-...+|.+..++. ..++.++..++.+|..++..-... ......++.+..+++. .
T Consensus 303 ~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d--~ 375 (588)
T 1b3u_A 303 HKVKEFCENLSADCRENVIMSQILPCIKELVS--DANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKD--E 375 (588)
T ss_dssp HHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT--CSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTC--S
T ss_pred HHHHHHHHHhChhhhhhHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCC--C
Confidence 999998742 222211222345678888887 567889998888888776311110 0111244555555532 2
Q ss_pred cHHHHHHHHHHHHHhh
Q 010533 458 AQQLQRSSCFMIRNLV 473 (508)
Q Consensus 458 ~~~vq~~A~~aL~nL~ 473 (508)
++.|+..++.++..++
T Consensus 376 ~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVN 391 (588)
T ss_dssp CHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3556655555555544
No 59
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.31 E-value=0.00026 Score=79.37 Aligned_cols=327 Identities=12% Similarity=0.098 Sum_probs=185.5
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhH-HHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r-~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aL 200 (508)
..+..|...+.+. .+......++..|..+|+.- ++..+ ..-.....+|.++..+.+.. .+.+++..++.++
T Consensus 134 ~ll~~L~~~l~~~------~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~vr~~al~~l 205 (861)
T 2bpt_A 134 ELMKIMVDNTGAE------QPENVKRASLLALGYMCESA-DPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNAL 205 (861)
T ss_dssp HHHHHHHHHTSTT------SCHHHHHHHHHHHHHHHHTS-STTSSTTGGGHHHHHHHHHHHHSTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHcC-ChhhhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHH
Confidence 3455566655432 14556677888888888641 11110 00001124566666665531 2678888899988
Q ss_pred HHhhcCCcchhHHH----hcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChH
Q 010533 201 ALLVHDVQSTETFR----TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND 276 (508)
Q Consensus 201 a~l~~~~~~~~~i~----~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~ 276 (508)
..++..-. ..+. ....++.+..++. ..+.+++..++.+|..++...+..-...+....++.++..+...++.
T Consensus 206 ~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 281 (861)
T 2bpt_A 206 ADSLIFIK--NNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281 (861)
T ss_dssp HHHGGGCH--HHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHH
T ss_pred HHHHHHHH--HHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 87653211 0110 0112344444443 45789999999999988754332211222225666777777666667
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhh--------cchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhc
Q 010533 277 SIQSLYDAIRVLLTPDDDQVVASQ--------VYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAV 342 (508)
Q Consensus 277 ~~~~A~~aL~~L~~~dd~r~~~~~--------a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~ 342 (508)
+...++.++..++........... .....+.+. ...++.++..|+... +..+...++.+|..++.
T Consensus 282 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~ 360 (861)
T 2bpt_A 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ 360 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Confidence 888888888877632100000000 001112222 246788888887532 13567778888888875
Q ss_pred ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc--hhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD--SNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (508)
Q Consensus 343 ~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~--~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~ 420 (508)
.-. . ..++.++..+.....+.++.+++.++.+|+.++... +.-...+. ..++.|+..+. ..++.++..
T Consensus 361 ~~~--~-----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~--d~~~~vr~~ 430 (861)
T 2bpt_A 361 NCG--N-----HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN--DQSLQVKET 430 (861)
T ss_dssp HHG--G-----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG--CSCHHHHHH
T ss_pred Hcc--H-----hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC--CCcHHHHHH
Confidence 321 1 123344444332222235689999999999998542 22222222 35778888887 568999999
Q ss_pred HHHHHHHHhcCChhhH--HHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 421 VMSIITVLSLRSPENA--ARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 421 a~~aL~~La~~~~~~~--~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
++++|..++..-+... ... -...++.+++.|.. ++.++..|||+|.+++..
T Consensus 431 a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 431 TAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQD---HPKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHHh
Confidence 9999999984211100 000 12346778888843 378999999999998753
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.18 E-value=2.2e-05 Score=81.24 Aligned_cols=272 Identities=9% Similarity=-0.012 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCC-hhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCC
Q 010533 142 DLNEMMGLFDKLIELCGGNEG-SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGG 218 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~-~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~gg 218 (508)
+......++..|+.+|+. . +..-... -...+|.++.+|+... .+.+++..+++++..++..-+.. ......-.
T Consensus 143 ~~~~r~~al~~l~~l~~~--~~~~~~~~~-~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 218 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQD--IDPEQLQDK-SNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFI 218 (462)
T ss_dssp CHHHHHHHHHHHHHHHHH--SCGGGTGGG-HHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh--CCchhhHhH-HHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 345566788888888863 1 1110000 0236777888886631 15788888999998865421100 00000012
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC------
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD------ 292 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d------ 292 (508)
++.+.+.+. ..+.+++..++++|..++......-...+..+.++.++..++..++++...+++.+..++...
T Consensus 219 ~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 296 (462)
T 1ibr_B 219 MQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (462)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444443 457899999999999987554321111121266777888887766678888888888776321
Q ss_pred ------cchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC------ChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHH
Q 010533 293 ------DDQVVASQVYGYARRFAKIGIARALVHSLHAGL------SSPSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (508)
Q Consensus 293 ------d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~------d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv 360 (508)
+.+..........+... ...+|.++..|.... +..+...++.+|..|+..-. ..+. ...++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-~~~~~~l~ 372 (462)
T 1ibr_B 297 ASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIK 372 (462)
T ss_dssp HCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-HHHHHHHH
T ss_pred cccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHH
Confidence 00000000011111111 135677777776431 23577788888888875321 1111 12344555
Q ss_pred HHHhccCCCCcHHHHHHHHHHHHHhhCCch---hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533 361 RCIDDSGLQGNKTVARICCSLLSKLAGSDS---NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431 (508)
Q Consensus 361 ~lL~~~~~~~~~~v~~~al~aL~~La~~~~---~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~ 431 (508)
..|.+ .+..++..++.+|+.++.... .+..+ ...+|.|+.+|. ..++.|+..||++|..++..
T Consensus 373 ~~l~~----~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 373 EHIKN----PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMK--DPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHTTC----SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcC----CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Confidence 55543 356899999999999985322 11112 457899999998 66799999999999999853
No 61
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.18 E-value=6.5e-05 Score=84.29 Aligned_cols=305 Identities=12% Similarity=0.072 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch--hHHHhcCCh
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST--ETFRTGGGP 219 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~--~~i~~~ggi 219 (508)
+......++..|..++.. .++..-.... ...+|.|+..++. .+..++..+++++..++..-... ..-.-...+
T Consensus 382 ~~~~r~~a~~~l~~i~~~-~~~~~~~~~l-~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l 456 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDG-PDKVQRTYYV-HQALPSILNLMND---QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV 456 (861)
T ss_dssp SHHHHHHHHHHHHHTSSS-SCHHHHHHHH-HHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH
T ss_pred ChhHHHHHHHHHHHHHcC-CCHHHHHHHH-HHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 455556677788887753 1111111111 2357777777765 36777777777777665421100 000112345
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-----hhhHHHHHHcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhcCCC
Q 010533 220 KLLVNILIDGNEDPEILNSGFAVVAASATGN-----EVVKESYMELKIDELILEILSRQR--NDSIQSLYDAIRVLLTPD 292 (508)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-----e~nr~~i~~~G~i~~Lv~lL~~~~--~~~~~~A~~aL~~L~~~d 292 (508)
+.+++.|.. ++.++..++++|..++... +.....+ ...++.|+.++.+.+ ..++..++.+|..++...
T Consensus 457 ~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 457 QACLIGLQD---HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHTS---CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcc---ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 667777753 3889999999998876421 1111111 235778888887543 367778888898887433
Q ss_pred cchhhhhhcchHHHHHHhcCCHHHHHHHHhcC--------C------ChhHHHHHHHHHHHhhcC-hhhHhHHhhcCCHH
Q 010533 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAG--------L------SSPSLISASIALKAVAVN-DEICKSVAENGGID 357 (508)
Q Consensus 293 d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~--------~------d~~~~~~a~~aL~~La~~-~e~~~~i~e~Ggi~ 357 (508)
.... ..+.. ..++.+++.|... + ...++..++.+|.+++.. .+......+ ..++
T Consensus 532 ~~~~-----~~~~~-----~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~ 600 (861)
T 2bpt_A 532 TDTV-----AETSA-----SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMG 600 (861)
T ss_dssp CGGG-----HHHHH-----HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHH
T ss_pred chhh-----HHHHH-----HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Confidence 2111 11222 3467777777642 1 134566788888887752 221111111 2456
Q ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhh
Q 010533 358 ALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPEN 435 (508)
Q Consensus 358 ~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~ 435 (508)
.++.++.... . + .+.+.++.++..++.. ++....+- ..+|.|+..+. .+++.++..++.++..++..-.+.
T Consensus 601 ~l~~~l~~~~-~-~-~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~--~~~~~vr~~a~~~l~~l~~~~~~~ 673 (861)
T 2bpt_A 601 LFFRLLEKKD-S-A-FIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALN--QVDSPVSITAVGFIADISNSLEED 673 (861)
T ss_dssp HHHHHHHSTT-G-G-GTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHH--CTTSHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHccCC-C-C-cHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhchh
Confidence 6777777531 1 1 5788899999988732 22332222 26788888886 566789999999999988543332
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
....+ ...++.+++.+.....+..++..+..++..++..
T Consensus 674 ~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 674 FRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp GHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred ccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 22222 2356777777764322467888899999888764
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.17 E-value=5.4e-05 Score=85.12 Aligned_cols=283 Identities=7% Similarity=0.017 Sum_probs=169.7
Q ss_pred CCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh---cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (508)
Q Consensus 172 ~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~---~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~ 248 (508)
...+|.|+..+.+.. .+..++..++.++..++.... .+... ...++.++..|.....+..++..+++++..++.
T Consensus 127 ~~ll~~l~~~l~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 127 PELIPQLVANVTNPN-STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TTHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 346788888887631 156777788888888775321 11121 223555666665432368899999999998764
Q ss_pred CChhh--HHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC
Q 010533 249 GNEVV--KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326 (508)
Q Consensus 249 ~~e~n--r~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d 326 (508)
.-+.+ .... ....++.+...+...+.++...++.+|..+..... +..........++.++..+.+ .+
T Consensus 204 ~~~~~~~~~~~-~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~---------~~~~~~~~~~l~~~~~~~~~~-~~ 272 (876)
T 1qgr_A 204 FTKANFDKESE-RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY---------QYMETYMGPALFAITIEAMKS-DI 272 (876)
T ss_dssp GCHHHHTSHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG---------GGCHHHHTTTHHHHHHHHHTC-SS
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHhcC-Cc
Confidence 32221 1111 11246666666655555777888888888763211 011111222456777776654 35
Q ss_pred hhHHHHHHHHHHHhhcChh----------------------hHhHHhhcCCHHHHHHHHhccCC---CCcHHHHHHHHHH
Q 010533 327 SPSLISASIALKAVAVNDE----------------------ICKSVAENGGIDALLRCIDDSGL---QGNKTVARICCSL 381 (508)
Q Consensus 327 ~~~~~~a~~aL~~La~~~e----------------------~~~~i~e~Ggi~~Lv~lL~~~~~---~~~~~v~~~al~a 381 (508)
+.+...++..+..++.... ..+... ...++.++..|....+ +.+..+...+..+
T Consensus 273 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~ 351 (876)
T 1qgr_A 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHH
Confidence 6677788877777764310 000000 1235566777753211 1234688888888
Q ss_pred HHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHHHHcCCCcHH
Q 010533 382 LSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSP-ENAARAMEAGSGDLAIQAMLKFPNAQQ 460 (508)
Q Consensus 382 L~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~-~~~~~i~~~G~i~~Lv~~L~~h~~~~~ 460 (508)
|..|+.... ..++. ..++.+...+. ..+..+++.++.+|..++.+.. +.....+ ...++.++..|.. .++.
T Consensus 352 l~~l~~~~~--~~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d--~~~~ 423 (876)
T 1qgr_A 352 LMLLATCCE--DDIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD--PSVV 423 (876)
T ss_dssp HHHHHHHHG--GGGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC--SSHH
T ss_pred HHHHHHHCc--HhhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC--CCHH
Confidence 888874211 11121 24455666665 5678999999999999996543 3333333 3468888888853 4688
Q ss_pred HHHHHHHHHHHhhhcCc
Q 010533 461 LQRSSCFMIRNLVARNP 477 (508)
Q Consensus 461 vq~~A~~aL~nL~~~~~ 477 (508)
|+..|||+|.+++...+
T Consensus 424 vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 99999999999987543
No 63
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.99 E-value=0.0025 Score=66.47 Aligned_cols=287 Identities=12% Similarity=0.113 Sum_probs=169.3
Q ss_pred HHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc---chhHH-HhcCChHH-HHHHHhcCCCCHHHHHHHHHH
Q 010533 168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---STETF-RTGGGPKL-LVNILIDGNEDPEILNSGFAV 242 (508)
Q Consensus 168 ~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~---~~~~i-~~~ggi~~-Lv~lL~~~~~~~~v~~~a~~~ 242 (508)
......++..++++|+.. ...++....+.-+.-++.+.+ .+..+ .+...... +..... ..++.-.+..++.+
T Consensus 72 l~~~~~~~~~~l~lL~~~--~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~-~~dd~~~ll~a~~l 148 (480)
T 1ho8_A 72 FKVNGKTLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSL-KGDFQTVLISGFNV 148 (480)
T ss_dssp --CSSTTHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCS-CSSHHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHh-cccchHHHHHHHHH
Confidence 444456788999999875 467888888888888887654 44333 33332221 222111 23444555666666
Q ss_pred HHHhhcCCh---hhHHHHHHcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC--CHHH
Q 010533 243 VAASATGNE---VVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARA 316 (508)
Q Consensus 243 L~~l~~~~e---~nr~~i~~~G~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g--~i~~ 316 (508)
+..++.... +.-..+.... -++..|++.. ...+--+...|..|...+..|. .+.+.+ .+++
T Consensus 149 ~~ll~~~~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~----------~f~~~~~~~~~~ 215 (480)
T 1ho8_A 149 VSLLVQNGLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRD----------VIWLHEKKFMPT 215 (480)
T ss_dssp HHHHTSTTTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHH----------HHHTTHHHHHHH
T ss_pred HHHHhccCCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHH----------HHHHcccchhHH
Confidence 555432111 1111222110 3445565532 2333346667777776655443 344332 3666
Q ss_pred HHHHHhcC-------------C---ChhHHHHHHHHHHHhhcChhhHhHHhhcCCH--HHHHHHHhccCCCCcHHHHHHH
Q 010533 317 LVHSLHAG-------------L---SSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARIC 378 (508)
Q Consensus 317 Lv~lL~~~-------------~---d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi--~~Lv~lL~~~~~~~~~~v~~~a 378 (508)
++.+++.. + ...++..++.++|-|+..++.+..+...+.. ..|+..++....+ .|.+-+
T Consensus 216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KE---KvvRv~ 292 (480)
T 1ho8_A 216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE---KVSRLC 292 (480)
T ss_dssp HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH---HHHHHH
T ss_pred HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccc---hhHHHH
Confidence 66554421 1 1356788999999999999998888877643 4566777775433 899999
Q ss_pred HHHHHHhhCCc--h---h-HHHHHhCCcHHHHHHHH-hccCCCH------------------------------------
Q 010533 379 CSLLSKLAGSD--S---N-KSAIIENGGMDKLIVVS-ARFSDDA------------------------------------ 415 (508)
Q Consensus 379 l~aL~~La~~~--~---~-k~~Iv~~Ggl~~Lv~lL-~~~~~~~------------------------------------ 415 (508)
+.+|+||...+ + . ++.++..++++ +++.| .++-+++
T Consensus 293 la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~ 371 (480)
T 1ho8_A 293 ISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLC 371 (480)
T ss_dssp HHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcc
Confidence 99999997543 1 1 22343344544 44444 3322322
Q ss_pred ------------------------------------------------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 010533 416 ------------------------------------------------SVLQEVMSIITVLSLRSPENAARAMEAGSGDL 447 (508)
Q Consensus 416 ------------------------------------------------~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~ 447 (508)
.+..-||-=|..++...|+-+..+-+.|+=+.
T Consensus 372 WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~ 451 (480)
T 1ho8_A 372 WSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKAD 451 (480)
T ss_dssp CCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHH
T ss_pred cCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHH
Confidence 12222444455555566777777777888888
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhhcC
Q 010533 448 AIQAMLKFPNAQQLQRSSCFMIRNLVARN 476 (508)
Q Consensus 448 Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~ 476 (508)
++++| .|+ ++.|+.+|..|+.-+..+|
T Consensus 452 VM~Lm-~h~-d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 452 IMELL-NHS-DSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHHT-SCS-SHHHHHHHHHHHHHHHHHS
T ss_pred HHHHh-cCC-CHHHHHHHHHHHHHHHHhc
Confidence 88888 464 6899999999998877654
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.91 E-value=0.00069 Score=74.06 Aligned_cols=266 Identities=13% Similarity=0.117 Sum_probs=160.5
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHh----cC-C----------CCHHHHH
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI----DG-N----------EDPEILN 237 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~----~~-~----------~~~~v~~ 237 (508)
+.++.|..+|.. .+..++..|+.++..++.... ..+. ..++.+++.|. .. . .++..+.
T Consensus 187 ~~~~~l~~lL~d---~d~~V~~~a~~~l~~i~~~~~--~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi 259 (621)
T 2vgl_A 187 DWTSRVVHLLND---QHLGVVTAATSLITTLAQKNP--EEFK--TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSV 259 (621)
T ss_dssp SCHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHCH--HHHT--THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHH
T ss_pred hHHHHHHHHhCC---CCccHHHHHHHHHHHHHHhCh--HHHH--HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHH
Confidence 788899999965 478899999999888876431 1111 23455555443 21 1 1689999
Q ss_pred HHHHHHHHhhcC-ChhhHHHHHHcCcHHHHHHHHhc-C----------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHH
Q 010533 238 SGFAVVAASATG-NEVVKESYMELKIDELILEILSR-Q----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA 305 (508)
Q Consensus 238 ~a~~~L~~l~~~-~e~nr~~i~~~G~i~~Lv~lL~~-~----------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~ 305 (508)
..+++|+..+.. ++..+..+.+ .+..++..+.. . ...++-+++.++..+.... +
T Consensus 260 ~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----------~-- 325 (621)
T 2vgl_A 260 KLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----------N-- 325 (621)
T ss_dssp HHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----------H--
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----------H--
Confidence 999999988753 3444554443 33444433211 1 1266777888888775211 1
Q ss_pred HHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 306 ~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
+.. .++..|..+|.+ ++++++.-+..+|..++........+. .-...++.+|.... +..|...++.+|..|
T Consensus 326 --~~~-~~~~~L~~~L~~-~~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~i~~~L~~d~---d~~Ir~~aL~lL~~l 396 (621)
T 2vgl_A 326 --LLV-RACNQLGQFLQH-RETNLRYLALESMCTLASSEFSHEAVK--THIETVINALKTER---DVSVRQRAVDLLYAM 396 (621)
T ss_dssp --HHH-HHHHHHHHHSSC-SCHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHHHHHHHTTCC---CHHHHHHHHHHHHHH
T ss_pred --HHH-HHHHHHHHHhcC-CCcchHHHHHHHHHHHHhccCcHHHHH--HHHHHHHHHhccCC---CHhHHHHHHHHHHHH
Confidence 111 356778888864 478888888889988887542112222 24567778887222 358999999999999
Q ss_pred hCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHH
Q 010533 386 AGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSS 465 (508)
Q Consensus 386 a~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A 465 (508)
+ ++.|...|+ ..|...+. ..+...+..++.++..+|.+.+..... .+..|++++....+ .+..++
T Consensus 397 ~-~~~Nv~~Iv-----~eL~~yl~--~~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~--~v~~ev 461 (621)
T 2vgl_A 397 C-DRSNAQQIV-----AEMLSYLE--TADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGD--YVSEEV 461 (621)
T ss_dssp C-CHHHHHHHH-----HHHHHHHH--HCCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGG--GSCSHH
T ss_pred c-ChhhHHHHH-----HHHHHHHH--hcCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcc--cchHHH
Confidence 7 445555554 36667776 457889999999999998654433222 23445555543111 122233
Q ss_pred HHHHHHhhhcCccchHHH
Q 010533 466 CFMIRNLVARNPENSFCS 483 (508)
Q Consensus 466 ~~aL~nL~~~~~e~~~~~ 483 (508)
...++.++.++|+.+.+.
T Consensus 462 ~~~l~~ii~~~~~~~~~~ 479 (621)
T 2vgl_A 462 WYRVIQIVINRDDVQGYA 479 (621)
T ss_dssp HHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHhCChhHHHHH
Confidence 445555555555554443
No 65
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.90 E-value=0.0012 Score=68.81 Aligned_cols=241 Identities=10% Similarity=0.062 Sum_probs=152.4
Q ss_pred HHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCC--hHHHHHHHhcC-------------CC--CHHHHHHHH
Q 010533 178 VCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG--PKLLVNILIDG-------------NE--DPEILNSGF 240 (508)
Q Consensus 178 Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~gg--i~~Lv~lL~~~-------------~~--~~~v~~~a~ 240 (508)
++..|.+. ...+.+.-|++.|..|+...+-|..|.+.+| ++.+++++.+. ++ ...++-.++
T Consensus 172 ~~~~L~~~--~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 172 LINILQNI--EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHCT--TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHhccc--cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 44445442 1233344466666666666666777876554 67776665532 11 345677888
Q ss_pred HHHHHhhcCChhhHHHHHHcCcH--HHHHHHHhcCC-hHHHHHHHHHHHHhcCCCc-chhhhhhcchHHHHHH-hcCCHH
Q 010533 241 AVVAASATGNEVVKESYMELKID--ELILEILSRQR-NDSIQSLYDAIRVLLTPDD-DQVVASQVYGYARRFA-KIGIAR 315 (508)
Q Consensus 241 ~~L~~l~~~~e~nr~~i~~~G~i--~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~dd-~r~~~~~a~~~~~~i~-~~g~i~ 315 (508)
-+++-+ +-++...+.+...+.+ +.|+++++... +.+.|-+.++|+||...+. .. ......++ ..++ +
T Consensus 250 l~iWlL-SF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~------~~~~~~~~~~~~~-l 321 (480)
T 1ho8_A 250 LLIWLL-TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH------KKVIKQLLLLGNA-L 321 (480)
T ss_dssp HHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH------HHHHHHHHHHHCH-H
T ss_pred HHHHHH-HcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh------hhHHHHHHHHccc-h
Confidence 888877 4555566666666644 67778888654 4788989999999986431 00 11223333 3344 5
Q ss_pred HHHHHHhcCC--ChhHHHHHHHHH-------HHhhcCh------------------------hhHhHHhhcC--CHHHHH
Q 010533 316 ALVHSLHAGL--SSPSLISASIAL-------KAVAVND------------------------EICKSVAENG--GIDALL 360 (508)
Q Consensus 316 ~Lv~lL~~~~--d~~~~~~a~~aL-------~~La~~~------------------------e~~~~i~e~G--gi~~Lv 360 (508)
++++.|.... |+++..++-... ..++.-+ ||..++.+.+ .++.|+
T Consensus 322 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~ 401 (480)
T 1ho8_A 322 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI 401 (480)
T ss_dssp HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHH
Confidence 5666666533 676665543322 2233222 3444555433 267888
Q ss_pred HHHhccC------CCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 361 RCIDDSG------LQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 361 ~lL~~~~------~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
++|.... +..++.++.-||.=|+.++. .|.+|..+-+.||=+.++++|. .+++.|+.+|+.++--+..
T Consensus 402 ~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~--h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 402 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN--HSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 9997421 12246788899999999985 7888988888899999999998 5789999999999877653
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.79 E-value=0.0058 Score=68.96 Aligned_cols=246 Identities=10% Similarity=0.064 Sum_probs=148.9
Q ss_pred cHHHHHHHHhcccC--C---CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 010533 174 GVELVCSICYKMRC--G---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (508)
Q Consensus 174 avp~Lv~lL~~~~~--~---~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~ 248 (508)
++..|...|.+.+. + ...++..|.-.|....-+..+ + ..++.|..+|.. ++..+.+.+..+|+.+-.
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-e-----ev~e~L~~~L~d--d~~~~~~~AalALGli~v 501 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-I-----EVYEALKEVLYN--DSATSGEAAALGMGLCML 501 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-H-----HHHHHHHHHHHT--CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-H-----HHHHHHHHHHhc--CCHHHHHHHHHHHhhhhc
Confidence 46667777765320 1 133444444445443222211 1 235567777763 334455566666765522
Q ss_pred CChhhHHHHHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCCh
Q 010533 249 GNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327 (508)
Q Consensus 249 ~~e~nr~~i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~ 327 (508)
+.- |.+ ++..|+..+... ++.+.+.++.+|..+...+. ..++.++++|....++
T Consensus 502 GTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~------------------e~~~~li~~L~~~~dp 556 (963)
T 4ady_A 502 GTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQ------------------ELADDLITKMLASDES 556 (963)
T ss_dssp TCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG------------------GGGHHHHHHHHHCSCH
T ss_pred ccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh------------------HHHHHHHHHHHhCCCH
Confidence 221 111 245555555443 44788888888887665442 4578888888876677
Q ss_pred hHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHH
Q 010533 328 PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVV 407 (508)
Q Consensus 328 ~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~l 407 (508)
.+...++.+++--.....+.. .|+.|+..+.+.. +.+|+..|+.+|+.++..+. ..++.+++.
T Consensus 557 ~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~--------e~v~rlv~~ 619 (963)
T 4ady_A 557 LLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDY--------TTVPRIVQL 619 (963)
T ss_dssp HHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSC--------SSHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCH--------HHHHHHHHH
Confidence 676666666643222211111 2455666665432 34799999999998764322 356778886
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533 408 SARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479 (508)
Q Consensus 408 L~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~ 479 (508)
|.+ ..++.++..++.+|..++.+++.. .++..|..++ |..+..|++.|..||..+..++.+.
T Consensus 620 L~~-~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~--~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 620 LSK-SHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT--KDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp GGG-CSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH--TCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHh-cCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc--cCCCHHHHHHHHHHHHHHhcCCccc
Confidence 654 458999999999999999887741 1345555555 4567889999999999988765554
No 67
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.70 E-value=0.042 Score=59.84 Aligned_cols=296 Identities=11% Similarity=0.091 Sum_probs=182.6
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa 201 (508)
-++..++.-+.+. +.-...-|++.|..+. .++. . ...+|.+..+|.+.+ .++-+...|+-++.
T Consensus 111 L~iN~l~kDl~~~-------n~~ir~lALr~L~~i~----~~e~----~-~~l~~~v~~~l~~~d-~~~~VRK~A~~al~ 173 (621)
T 2vgl_A 111 LINNAIKNDLASR-------NPTFMGLALHCIANVG----SREM----A-EAFAGEIPKILVAGD-TMDSVKQSAALCLL 173 (621)
T ss_dssp HHHHHHHHHHHSC-------CHHHHHHHHHHHHHHC----CHHH----H-HHHTTHHHHHHHCSS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-------CHHHHHHHHHHhhccC----CHHH----H-HHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 3455555555554 4554555666666653 3331 1 135677788883221 47788888888887
Q ss_pred HhhcCCcchhHHHh-cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHh----cC---
Q 010533 202 LLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS----RQ--- 273 (508)
Q Consensus 202 ~l~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~----~~--- 273 (508)
.+..-. ++.+. .+.++.+.++|. ..++.|+..|+.++..++..++. .+ ...++.++..|. .+
T Consensus 174 kl~~~~---p~~~~~~~~~~~l~~lL~--d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~~~~~~~~L~~ll~~~~~~ 243 (621)
T 2vgl_A 174 RLYRTS---PDLVPMGDWTSRVVHLLN--DQHLGVVTAATSLITTLAQKNPE---EF--KTSVSLAVSRLSRIVTSASTD 243 (621)
T ss_dssp HHHHHC---GGGCCCCSCHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHCHH---HH--TTHHHHHHHHHHHHHHCCSSS
T ss_pred HHHHhC---hhhcCchhHHHHHHHHhC--CCCccHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHHHHhCCCCC
Confidence 776533 23333 477899999996 45889999999999998765543 21 134555555554 21
Q ss_pred ----------ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--------C--hhHHHHH
Q 010533 274 ----------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--------S--SPSLISA 333 (508)
Q Consensus 274 ----------~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--------d--~~~~~~a 333 (508)
++-.+-.....|..++..+|.. ....+.+ .++.++..+.+.+ + ..++.++
T Consensus 244 ~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~--------~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 244 LQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA--------VRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp CSTTEETTEESHHHHHHHHHHGGGSSSCSSHH--------HHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred ccchhhcCCCCchHHHHHHHHHHHhCCCCCHH--------HHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 1223334555565565433321 1222221 3444444332211 2 2677888
Q ss_pred HHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC
Q 010533 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD 413 (508)
Q Consensus 334 ~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~ 413 (508)
+.++..+...++.... ++..|..+|.+. +..++-.++..|..++........+. .-...++..|. +.+
T Consensus 314 ~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~----~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~i~~~L~-~d~ 381 (621)
T 2vgl_A 314 ISLIIHHDSEPNLLVR-----ACNQLGQFLQHR----ETNLRYLALESMCTLASSEFSHEAVK--THIETVINALK-TER 381 (621)
T ss_dssp HHHHHHHCCCHHHHHH-----HHHHHHHHSSCS----CHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHHHHHHHT-TCC
T ss_pred HHHHHhcCCcHHHHHH-----HHHHHHHHhcCC----CcchHHHHHHHHHHHHhccCcHHHHH--HHHHHHHHHhc-cCC
Confidence 8888888755544432 346677777632 34899999999999986432222332 35677888885 245
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 414 DASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 414 ~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
+..|+..++-+|..|+ +++|...++. .|.+.+.. .+...++.+..+|..++.+
T Consensus 382 d~~Ir~~aL~lL~~l~--~~~Nv~~Iv~-----eL~~yl~~--~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 382 DVSVRQRAVDLLYAMC--DRSNAQQIVA-----EMLSYLET--ADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHH-----HHHHHHHH--CCHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHc--ChhhHHHHHH-----HHHHHHHh--cCHHHHHHHHHHHHHHHHh
Confidence 7899999999999998 6778777653 46666654 3567788888889888765
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.49 E-value=0.00065 Score=79.87 Aligned_cols=269 Identities=11% Similarity=0.057 Sum_probs=162.2
Q ss_pred HHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 010533 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (508)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l 203 (508)
+..|...+.+. |.+....|+..|.+..+.+ .... ..-.....++.|++.|.+ .+..++..|+.+|..+
T Consensus 8 l~~lL~~l~s~-------d~~~R~~A~~~L~~~l~~~-~~~~-~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~l 75 (1230)
T 1u6g_C 8 ISNLLEKMTSS-------DKDFRFMATNDLMTELQKD-SIKL-DDDSERKVVKMILKLLED---KNGEVQNLAVKCLGPL 75 (1230)
T ss_dssp HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSSS-CCSC-CTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-------CHhHHHHHHHHHHHHHccc-ccCC-ChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 44444555554 7888888999998887641 0100 000112457788888874 4788888888888887
Q ss_pred hcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh------HHHHHHcCcHHHHHHHHhc-CChH
Q 010533 204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV------KESYMELKIDELILEILSR-QRND 276 (508)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n------r~~i~~~G~i~~Lv~lL~~-~~~~ 276 (508)
...... .. -...++.++..|. .++..++..++.+|+.++...... .... -...+|.|+..+.. .+..
T Consensus 76 ~~~~~~--~~-~~~i~~~Ll~~l~--d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 76 VSKVKE--YQ-VETIVDTLCTNML--SDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp HTTSCH--HH-HHHHHHHHHHHTT--CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHH
T ss_pred HHhCCH--HH-HHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchH
Confidence 754321 11 1123455555554 345678888888888876432211 0111 12468889999974 4557
Q ss_pred HHHHHHHHHHHhcCC--CcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcC
Q 010533 277 SIQSLYDAIRVLLTP--DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354 (508)
Q Consensus 277 ~~~~A~~aL~~L~~~--dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~G 354 (508)
++..|+.+|..++.. +.. ..+.. ..++.|+..|.+ .++.+...++.+|..++..... .+. ..
T Consensus 150 ~~~~al~~l~~~~~~~~~~l-------~~~~~-----~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~--~~~-~~ 213 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGLL-------VNFHP-----SILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN--IVF-VD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSSC-------TTTHH-----HHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC------C-TT
T ss_pred HHHHHHHHHHHHHHHhHhHH-------HHHHH-----HHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH--HHH-HH
Confidence 777888888887731 111 01111 235666666664 3567888999999998864221 111 12
Q ss_pred CHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-ch-hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 010533 355 GIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DS-NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRS 432 (508)
Q Consensus 355 gi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~ 432 (508)
.++.++..|....+. .+...++.+|..++.. +. .... -...+|.++..+. .+++.+++.++.++..++...
T Consensus 214 ~l~~l~~~L~~~~~~---~~r~~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 214 LIEHLLSELSKNDSM---STTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFCN--VDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHHHHTCSS---CSCTTHHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhccCCch---hHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHC
Confidence 467888888764221 3556677888777632 11 1110 1246788888887 567889999999998887644
Q ss_pred h
Q 010533 433 P 433 (508)
Q Consensus 433 ~ 433 (508)
+
T Consensus 287 ~ 287 (1230)
T 1u6g_C 287 P 287 (1230)
T ss_dssp T
T ss_pred h
Confidence 3
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.43 E-value=0.0031 Score=59.46 Aligned_cols=184 Identities=7% Similarity=0.083 Sum_probs=134.3
Q ss_pred CcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCh
Q 010533 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (508)
Q Consensus 173 Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e 251 (508)
+.+..|..+|.. .|+.+..+++.+|-.+....+.. ....-....+.++++++ ..+..+.-.|+++|..+..+.+
T Consensus 33 ~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk--~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 33 RALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS--QENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC--STTHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHcCCC
Confidence 367788899866 58899999999998888754322 22233567889999986 4689999999999999987776
Q ss_pred hhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHH
Q 010533 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (508)
Q Consensus 252 ~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~ 331 (508)
-....+.+ .+..|.++++++++-...+|+..|..|..-+..+ +.+..+..++ .+.|+.++.
T Consensus 108 L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~----------------~V~~~l~sLl-~Skd~~vK~ 168 (265)
T 3b2a_A 108 MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK----------------LVRTYINELV-VSPDLYTKV 168 (265)
T ss_dssp BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH----------------HHHHHHHHHH-TCSSHHHHH
T ss_pred CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH----------------HHHHHHHHHH-hCCChhHHH
Confidence 66666665 4678888888777667778999999884333211 3467888888 445888999
Q ss_pred HHHHHHHHhhcCh---hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCc
Q 010533 332 SASIALKAVAVND---EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSD 389 (508)
Q Consensus 332 ~a~~aL~~La~~~---e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~ 389 (508)
.+..+|-+++... ++...|++ ++ -.+|+. + |+.+++-|+.+|..+.+.+
T Consensus 169 agl~~L~eia~~S~D~~i~~~I~~--eI---~elL~~--e--D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGHLTLILD--EI---PSLLQN--D--NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHHGGGCSSCCCGGGTTT--TH---HHHHTC--S--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhcccCCHHHHHHHHH--HH---HHHHcC--C--CHHHHHHHHHHHHHHHcCc
Confidence 9999999998743 44455543 34 345554 2 4699999999999988654
No 70
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.25 E-value=0.0034 Score=73.67 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=164.5
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcch-hHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n 253 (508)
++.|+.-+.+ .|.+++..|...|.......... ..-.....++.+++.|. ..+.+++..|+.+|+.++.....
T Consensus 8 l~~lL~~l~s---~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~- 81 (1230)
T 1u6g_C 8 ISNLLEKMTS---SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSKVKE- 81 (1230)
T ss_dssp HHHHHHHTTC---SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHHhcCC---CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCH-
Confidence 4444444444 57888888888887665432110 00011234566777776 46899999999999998754433
Q ss_pred HHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHH
Q 010533 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (508)
Q Consensus 254 r~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a 333 (508)
..+ ..+++.|+..|...+..++..++.+|..++..-.... .......... ...+|.|+..+.+..+..+...+
T Consensus 82 -~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~---~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~a 154 (1230)
T 1u6g_C 82 -YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS---SGSALAANVC-KKITGRLTSAIAKQEDVSVQLEA 154 (1230)
T ss_dssp -HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--------CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHH
T ss_pred -HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc---cccchHHHHH-HHHHHHHHHHHcCCCchHHHHHH
Confidence 111 1356778888876666777778888887763211100 0000001111 13589999999753466788888
Q ss_pred HHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc
Q 010533 334 SIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF 411 (508)
Q Consensus 334 ~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~ 411 (508)
+.+|..++.. +.....+ ...++.++..|.+ ++..++..++.+|..++...... +. ...++.++..|...
T Consensus 155 l~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~----~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 155 LDIMADMLSRQGGLLVNFH--PSILTCLLPQLTS----PRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGC----SSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccC
Confidence 8888887742 1111100 1123445555543 24589999999999998643221 21 23578888888743
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 412 SDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 412 ~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
.+..++..++.++..++...+...... -...++.+++.+.. .++.+++.+.+++..++...++
T Consensus 226 -~~~~~r~~a~~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d--~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 226 -DSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNV--DDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp -CSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHCTTC
T ss_pred -CchhHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHChH
Confidence 224567778888888875433311111 13567888888853 4567888888898888765443
No 71
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.21 E-value=0.0052 Score=61.17 Aligned_cols=156 Identities=17% Similarity=0.187 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHH-hhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHH
Q 010533 315 RALVHSLHAGLSSPSLISASIALKA-VAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKS 393 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~-La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~ 393 (508)
..+++-|.+. +...+..+..-|.. +..+.++...+++.||+..|++..... +...+..++.+|.+|....++..
T Consensus 121 ~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 121 NAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhcccccc
Confidence 3344555554 34456666677776 566789999999999999999999764 23899999999999999988888
Q ss_pred HHHhC-CcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc----------HHHHHHHHH-cCCCcHHH
Q 010533 394 AIIEN-GGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS----------GDLAIQAML-KFPNAQQL 461 (508)
Q Consensus 394 ~Iv~~-Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~----------i~~Lv~~L~-~h~~~~~v 461 (508)
.|++. ..|..|..++. +....|.+.|+..|..++..++.+...+.++=- ...|+..|+ +...+..+
T Consensus 196 gvvs~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHCHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred chhCCHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 88853 46888888888 678999999999999999877777665544311 568888885 23457888
Q ss_pred HHHHHHHHHHhhhcCc
Q 010533 462 QRSSCFMIRNLVARNP 477 (508)
Q Consensus 462 q~~A~~aL~nL~~~~~ 477 (508)
|.+|-..|-.+...-|
T Consensus 274 q~~amtLIN~lL~~ap 289 (339)
T 3dad_A 274 LVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8776665555544434
No 72
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.17 E-value=0.015 Score=57.92 Aligned_cols=139 Identities=8% Similarity=0.013 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHh-cCChH
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPK 220 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~-~ggi~ 220 (508)
+.++.+.++..|+..... +..+...++..||+..|+..... .+...+..+|.++..++.....-..++. ...|.
T Consensus 131 ~~~~lr~aLfsLk~~~q~--D~~Fa~EFI~~~GL~~Li~vi~~---~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~ 205 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQE--DKDLVPEFVHSEGLSCLIRVGAA---ADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ 205 (339)
T ss_dssp CHHHHHHHHHHHHHHHHT--CTTHHHHHHHTTHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhc--chHHHHHHHHhccHHHHHHHHHh---cChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence 678899999999995555 78888999999999999999877 4788999999999999865333334553 45677
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-C---------cHHHHHHHHh---cCChHHHHHHHHHHHH
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL-K---------IDELILEILS---RQRNDSIQSLYDAIRV 287 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G---------~i~~Lv~lL~---~~~~~~~~~A~~aL~~ 287 (508)
.+..++. +.+..|...++..|..++..++.+...+.++ . -...|+.+|. +.+.+++.+|...|-.
T Consensus 206 ~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 206 WLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 7887877 4679999999999999988887776655432 1 2678999997 3444777776654443
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.13 E-value=7.1e-05 Score=64.44 Aligned_cols=119 Identities=9% Similarity=0.032 Sum_probs=80.8
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 010533 261 KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (508)
Q Consensus 261 G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~L 340 (508)
..++.|+.+|++.+..+...|+++|..+- + ..++.|+.+|++ +++.+...++++|+++
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~-------------------~~~~~L~~~L~d-~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG--D-------------------EAFEPLLESLSN-EDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS--S-------------------TTHHHHHHGGGC-SCHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC--c-------------------hHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Confidence 45677777777655555555665554331 1 236889998885 5788999999999887
Q ss_pred hcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533 341 AVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (508)
Q Consensus 341 a~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~ 420 (508)
... ..++.|+.+|.+. +..|...++.+|..+.. ..+++.|+.+|+ .+++.|+..
T Consensus 70 ~~~----------~a~~~L~~~L~d~----~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~--d~~~~vr~~ 123 (131)
T 1te4_A 70 QDE----------RAVEPLIKLLEDD----SGFVRSGAARSLEQIGG----------ERVRAAMEKLAE--TGTGFARKV 123 (131)
T ss_dssp CSH----------HHHHHHHHHHHHC----CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT--SCCTHHHHH
T ss_pred CCH----------HHHHHHHHHHcCC----CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHH
Confidence 632 2478899999763 23899999999998752 246889999997 667899999
Q ss_pred HHHHHHH
Q 010533 421 VMSIITV 427 (508)
Q Consensus 421 a~~aL~~ 427 (508)
|+.+|..
T Consensus 124 A~~aL~~ 130 (131)
T 1te4_A 124 AVNYLET 130 (131)
T ss_dssp HHHHGGG
T ss_pred HHHHHHh
Confidence 9988764
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.07 E-value=0.014 Score=55.07 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=118.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCC-CcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-
Q 010533 265 LILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV- 342 (508)
Q Consensus 265 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~-dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~- 342 (508)
.+.+.+.+.+-...+.|...|..+... .+.. ...+ . ..++.|..+|....+..+...++.+|..|+.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-----~~~~-~-----~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE-----NGEY-G-----ALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC-----CCCC-H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCC-----CCCH-H-----HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 366667655546667777777777643 1110 0011 1 2357778888522467788899999999885
Q ss_pred -ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533 343 -NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421 (508)
Q Consensus 343 -~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a 421 (508)
.+++...+.. .++.|+..+.+. +..++..++.+|.+++...... ..+|.|...|. ..++.+++.+
T Consensus 88 l~~~~~~~~~~--ilp~ll~~l~d~----~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~--~~~~~vr~~~ 153 (242)
T 2qk2_A 88 LAKRFSNYASA--CVPSLLEKFKEK----KPNVVTALREAIDAIYASTSLE------AQQESIVESLS--NKNPSVKSET 153 (242)
T ss_dssp HGGGGHHHHHH--HHHHHHHGGGCC----CHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT--CSCHHHHHHH
T ss_pred HhhhHHHHHHH--HHHHHHHHHcCC----CHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc--CCChHHHHHH
Confidence 2222222211 367777777753 3589999999999998654321 24677888887 4689999999
Q ss_pred HHHHHHHhcCC-hhh-HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 422 MSIITVLSLRS-PEN-AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 422 ~~aL~~La~~~-~~~-~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+..|..+.... |+. -...+. ..++.|+.+|.. .++.|+..|..+|..++.
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l~-~l~p~l~~~l~D--~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLLK-LLTTSLVKTLNE--PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHHH-HHHHHHHHHHTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHhcC--CChHHHHHHHHHHHHHHH
Confidence 99999965443 431 122222 467888888843 568899999999988874
No 75
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.05 E-value=7.4e-05 Score=64.31 Aligned_cols=119 Identities=8% Similarity=0.039 Sum_probs=81.7
Q ss_pred CCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchh
Q 010533 312 GIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSN 391 (508)
Q Consensus 312 g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~ 391 (508)
..++.|+.+|++ .++.+...++++|..+.. ..++.|+.+|.+. ++.++..++.+|+++..
T Consensus 12 ~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~----~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 12 SGLVPRGSHMAD-ENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNE----DWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp ---------CCS-SCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCS----CHHHHHHHHHHHGGGCS----
T ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCC----CHHHHHHHHHHHHhcCC----
Confidence 567888888875 355566666666655432 1368888888752 45899999999998753
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010533 392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRN 471 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~n 471 (508)
...++.|+.+|. .+++.|+..++++|..+. ++ ..++.|+++++ ..++.|+..|+++|..
T Consensus 72 ------~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~--~~---------~a~~~L~~~l~--d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ------ERAVEPLIKLLE--DDSGFVRSGAARSLEQIG--GE---------RVRAAMEKLAE--TGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHC--SH---------HHHHHHHHHTT--SCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHh--CCCHHHHHHHHHHHHh
Confidence 135899999997 568899999999999986 22 25678888885 2567899999998864
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.78 E-value=0.011 Score=55.79 Aligned_cols=180 Identities=10% Similarity=0.139 Sum_probs=116.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh-HHHHHHcCcHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCcchhhh
Q 010533 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVV-KESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQVVA 298 (508)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n-r~~i~~~G~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~dd~r~~~ 298 (508)
.+.+.+. +.+-..+..++..|..++..++.. ...+ ...++.|...|. ..+..+...|+.+|..|+.. +
T Consensus 19 ~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~------l 88 (242)
T 2qk2_A 19 DFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKG------L 88 (242)
T ss_dssp THHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH------H
T ss_pred HHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH------H
Confidence 3556664 456777788888887776542211 0001 134667778884 55557888899999988831 1
Q ss_pred hhcc-hHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHH
Q 010533 299 SQVY-GYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (508)
Q Consensus 299 ~~a~-~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~ 377 (508)
+..+ .|... .++.|+..+.+. +..+...++.+|..+...... .. .++.|...|.+ .++.+...
T Consensus 89 ~~~~~~~~~~-----ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-~~-----ll~~l~~~l~~----~~~~vr~~ 152 (242)
T 2qk2_A 89 AKRFSNYASA-----CVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-EA-----QQESIVESLSN----KNPSVKSE 152 (242)
T ss_dssp GGGGHHHHHH-----HHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-HH-----HHHHHHHHTTC----SCHHHHHH
T ss_pred hhhHHHHHHH-----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-HH-----HHHHHHHHHcC----CChHHHHH
Confidence 1111 22332 478999988864 567888899999888754221 11 23445555543 35689999
Q ss_pred HHHHHHHhh-CC-ch--hHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 378 CCSLLSKLA-GS-DS--NKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 378 al~aL~~La-~~-~~--~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
++..|..+. .. ++ ....+- ..+|.|+.+|. ..++.|+..|..+|..|+.
T Consensus 153 ~l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 153 TALFIARALTRTQPTALNKKLLK--LLTTSLVKTLN--EPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHT--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhc--CCChHHHHHHHHHHHHHHH
Confidence 999999964 32 22 233332 46789999997 6689999999999999884
No 77
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.55 E-value=0.4 Score=54.23 Aligned_cols=207 Identities=11% Similarity=0.083 Sum_probs=124.5
Q ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhH
Q 010533 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (508)
Q Consensus 175 vp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr 254 (508)
+..|+..+... .+..+...+...|+.+.-+. ...++.+++.|.. ..++-++..++.+++-.+.+.-++
T Consensus 509 i~~LL~~~~e~--~~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~- 576 (963)
T 4ady_A 509 IHDMFTYSQET--QHGNITRGLAVGLALINYGR--------QELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNN- 576 (963)
T ss_dssp HHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCH-
T ss_pred HHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCH-
Confidence 45555555432 24455555555555443332 2467888888875 357778777777776554433322
Q ss_pred HHHHHcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHH
Q 010533 255 ESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (508)
Q Consensus 255 ~~i~~~G~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a 333 (508)
.+|..|++.+.++ ++.+++.|..+|..+...+. ..++.++.+|....++.+...+
T Consensus 577 ------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~------------------e~v~rlv~~L~~~~d~~VR~gA 632 (963)
T 4ady_A 577 ------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY------------------TTVPRIVQLLSKSHNAHVRCGT 632 (963)
T ss_dssp ------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC------------------SSHHHHTTTGGGCSCHHHHHHH
T ss_pred ------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH------------------HHHHHHHHHHHhcCCHHHHHHH
Confidence 1356677777655 34777888888876655432 3467777777766688899999
Q ss_pred HHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh-CCchh-HHHHHhCCcHHHHHHHHhcc
Q 010533 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA-GSDSN-KSAIIENGGMDKLIVVSARF 411 (508)
Q Consensus 334 ~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La-~~~~~-k~~Iv~~Ggl~~Lv~lL~~~ 411 (508)
+.+|+.++..+.+.. .++.|..++.+. +..|...|+.+|+.+. ++.+. ...+. +.+..|.......
T Consensus 633 alALGli~aGn~~~~------aid~L~~L~~D~----d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk 700 (963)
T 4ady_A 633 AFALGIACAGKGLQS------AIDVLDPLTKDP----VDFVRQAAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNK 700 (963)
T ss_dssp HHHHHHHTSSSCCHH------HHHHHHHHHTCS----SHHHHHHHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCS
T ss_pred HHHHHHhccCCCcHH------HHHHHHHHccCC----CHHHHHHHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcc
Confidence 999999876433222 245566665542 3489999999999984 43322 01111 1233455555421
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 010533 412 SDDASVLQEVMSIITVLS 429 (508)
Q Consensus 412 ~~~~~v~e~a~~aL~~La 429 (508)
..++..+-.+.-+..-+.
T Consensus 701 ~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 701 HQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 235666666666666554
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.44 E-value=0.035 Score=52.38 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=124.7
Q ss_pred ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC-hhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (508)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~-e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~ 296 (508)
.+..|..+|. ..|..++..++.+|.++-..- ..-+..+++ ..++.+++++++.++.+.-.|..+|..|..+-....
T Consensus 34 ~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 34 ALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 3455666663 458899999999999886543 233334443 578999999988777777788899998886543211
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHH
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR 376 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~ 376 (508)
..+. ..+.+|.++++++ +.-....++-.|+.|-..... . +.+..+.+++. +. +..++.
T Consensus 111 ---------~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-~-----~V~~~l~sLl~-Sk---d~~vK~ 168 (265)
T 3b2a_A 111 ---------KTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-K-----LVRTYINELVV-SP---DLYTKV 168 (265)
T ss_dssp ---------HHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-H-----HHHHHHHHHHT-CS---SHHHHH
T ss_pred ---------HHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-H-----HHHHHHHHHHh-CC---ChhHHH
Confidence 1222 2467888888854 555678888888888443222 1 23467888883 32 459999
Q ss_pred HHHHHHHHhhCC---chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcC
Q 010533 377 ICCSLLSKLAGS---DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLR 431 (508)
Q Consensus 377 ~al~aL~~La~~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~ 431 (508)
.++.+|.++++. +++-.-|. .-+-.+|+ +.++.+++-|..+|-.+..+
T Consensus 169 agl~~L~eia~~S~D~~i~~~I~-----~eI~elL~--~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGHLTLIL-----DEIPSLLQ--NDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHHHHHHGGGCSSCCCGGGTT-----TTHHHHHT--CSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccCCHHHHHHHH-----HHHHHHHc--CCCHHHHHHHHHHHHHHHcC
Confidence 999999999853 23333333 33445677 67999999999999999753
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.33 Score=44.14 Aligned_cols=214 Identities=13% Similarity=0.165 Sum_probs=137.2
Q ss_pred cCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcc
Q 010533 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDD 294 (508)
Q Consensus 216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~ 294 (508)
...+..++++|+. +-=.|+..++.++..++...++--..+ +..|+-+++.... ..-++.+.++..++.-.
T Consensus 31 ~~~l~~lI~~LDD--DlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-- 101 (253)
T 2db0_A 31 ESVLKKLIELLDD--DLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-- 101 (253)
T ss_dssp HHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcc--HHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC--
Confidence 3445666777752 223588899999999876666554443 3456666665433 55566777787776321
Q ss_pred hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHH
Q 010533 295 QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKT 373 (508)
Q Consensus 295 r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~ 373 (508)
+ .++. +.+|.|..=.+-+ |+.+..++..+|..++. +++....|+ .-+..++.+ ++. .
T Consensus 102 -P----------e~v~-~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smlts-kd~---~ 159 (253)
T 2db0_A 102 -P----------ELVK-SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSS-KNR---E 159 (253)
T ss_dssp -H----------HHHH-HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSC-SSH---H
T ss_pred -H----------HHHH-hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcC-CCh---H
Confidence 1 1222 4567776666665 78889999999999998 777766555 446667764 232 2
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHH
Q 010533 374 VARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAML 453 (508)
Q Consensus 374 v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~ 453 (508)
=.-.++..|..+. +|.-.-+ .-.+|.|..+|. .++.-|+..++-+|.+|+.-+|..+..+. ..++-|.
T Consensus 160 Dkl~aLnFi~alG---en~~~yv-~PfLprL~aLL~--D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~ 227 (253)
T 2db0_A 160 DKLTALNFIEAMG---ENSFKYV-NPFLPRIINLLH--DGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELN 227 (253)
T ss_dssp HHHHHHHHHHTCC---TTTHHHH-GGGHHHHHGGGG--CSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCC
T ss_pred HHHHHHHHHHHHh---ccCcccc-CcchHHHHHHHc--CcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhc
Confidence 2234444444443 2222222 257899999998 77899999999999999999998666543 2333343
Q ss_pred cCCCcHHHHHHHHHHHHHhhh
Q 010533 454 KFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 454 ~h~~~~~vq~~A~~aL~nL~~ 474 (508)
. .+..|++..-.+|..++.
T Consensus 228 D--~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 228 D--TSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp C--SCHHHHHHHHHHHHHHHH
T ss_pred C--cHHHHHHHHHHHHHHHHH
Confidence 2 345677777777776654
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.17 Score=48.26 Aligned_cols=200 Identities=9% Similarity=0.062 Sum_probs=118.4
Q ss_pred HHHHhcCChHHHHHHHHHHHH-hcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--C
Q 010533 267 LEILSRQRNDSIQSLYDAIRV-LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--N 343 (508)
Q Consensus 267 v~lL~~~~~~~~~~A~~aL~~-L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~ 343 (508)
.+.|.+.+-...++|...|.. ++.+. .+... ...++. ..+..|...|....+..+...+|.+|+.|+. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~-~~~~~~------~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQT-KKLKS-TSQNYS------NLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCC-TTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcC-Ccccc-CcccHH------HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 445555444556677777887 76321 11100 000000 2366777778444466778899999999884 2
Q ss_pred -hhhH-hHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcHHHHHHHHhccCCCHHHHHH
Q 010533 344 -DEIC-KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS-DSNKSAIIENGGMDKLIVVSARFSDDASVLQE 420 (508)
Q Consensus 344 -~e~~-~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~ 420 (508)
+++. ..... .++.|++.+.+. .+.|++.+..+|..++.+ +.....-.=...++.|+..|. +.++.+++.
T Consensus 94 ~~~f~~~y~~~--llp~ll~~l~dk----k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~--~k~~~vk~~ 165 (249)
T 2qk1_A 94 TPGFSKDYVSL--VFTPLLDRTKEK----KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMK--HKTPQIRME 165 (249)
T ss_dssp TTTSCHHHHHH--HHHHHHHGGGCC----CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTT--CSSHHHHHH
T ss_pred cccccHHHHHH--HHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHc--CCChHHHHH
Confidence 2222 22221 356667666642 347889999999888642 111000000024667888887 558999999
Q ss_pred HHHHHHHHhcCChh---hHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh--cCccchHHHHh
Q 010533 421 VMSIITVLSLRSPE---NAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA--RNPENSFCSVM 485 (508)
Q Consensus 421 a~~aL~~La~~~~~---~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~--~~~e~~~~~~~ 485 (508)
++.+|..++...+. .-...+....++.+.++|. ..++.|+..|..++.-++. ++... ..++.
T Consensus 166 al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~~~vG~~~~-~p~l~ 232 (249)
T 2qk1_A 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILIKIFGMNTF-VKTLE 232 (249)
T ss_dssp HHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHCSGGG-HHHHH
T ss_pred HHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhCHHHH-HHHHH
Confidence 99999999865442 2222232467899999994 3568898888888877763 44434 34443
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.83 E-value=1.6 Score=49.61 Aligned_cols=284 Identities=11% Similarity=0.073 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcc--hhHHHhcCCh
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGP 219 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~--~~~i~~~ggi 219 (508)
+.++...+...+..+... +... .....+.+..|...+.... +. ..|+.++..++..... ..+-.--+-+
T Consensus 27 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~k~--~~---~~a~~~~~~~~~~~~~~~~~e~~~~~~~ 97 (986)
T 2iw3_A 27 TADNRHEIASEVASFLNG--NIIE--HDVPEHFFGELAKGIKDKK--TA---ANAMQAVAHIANQSNLSPSVEPYIVQLV 97 (986)
T ss_dssp CTTTHHHHHHHHHHHHTS--SCSS--SSCCHHHHHHHHHHHTSHH--HH---HHHHHHHHHHTCTTTCCTTTHHHHHTTH
T ss_pred chhHHHHHHHHHHHHHhc--cccc--cccchhHHHHHHHHHhccC--CH---HHHHHHHHHHHHhcCCCCCcccchHHHH
Confidence 345667777788887664 1111 0111256677777765431 22 5667777777643211 1111111356
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CChhhHHHHHHcCcHHHHHHHHhcCCh-HHHHHHHHHHHHhcCCCcchhh
Q 010533 220 KLLVNILIDGNEDPEILNSGFAVVAASAT-GNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVV 297 (508)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-~~e~nr~~i~~~G~i~~Lv~lL~~~~~-~~~~~A~~aL~~L~~~dd~r~~ 297 (508)
+.+++.+. .....|+..|-.++..+.. .++..- ...+|.|+..|.+... .....|..+|..|+..- .
T Consensus 98 ~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~-- 166 (986)
T 2iw3_A 98 PAICTNAG--NKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--K-- 166 (986)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--H--
T ss_pred HHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--H--
Confidence 66666654 2346677666655555443 233222 3458999999977654 55666777777776321 0
Q ss_pred hhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc---ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHH
Q 010533 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV---NDEICKSVAENGGIDALLRCIDDSGLQGNKTV 374 (508)
Q Consensus 298 ~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~---~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v 374 (508)
..-...+- ..||.+-+.|.+. .+++...+..++-.++. |.+.- .-||.|+++|.+. + +
T Consensus 167 ----~~~~~~~~--~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p-~----~- 227 (986)
T 2iw3_A 167 ----DQVALRMP--ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADP-T----E- 227 (986)
T ss_dssp ----HHHHHHHH--HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCT-T----H-
T ss_pred ----HHHHHhcc--chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcCh-h----h-
Confidence 01112222 4678888888764 36777777777766554 33332 2368999999874 2 2
Q ss_pred HHHHHHHHHHhhC---CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc--CChhhHHHHHhcCcHHHHH
Q 010533 375 ARICCSLLSKLAG---SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL--RSPENAARAMEAGSGDLAI 449 (508)
Q Consensus 375 ~~~al~aL~~La~---~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~--~~~~~~~~i~~~G~i~~Lv 449 (508)
+-+|+..|+.-.- -++-.-+++ +|.|.+-|+ .....+++.++-++-|||. ++|.-...++- ...|-+-
T Consensus 228 ~~~~~~~l~~~tfv~~v~~~~l~~~----~p~l~r~l~--~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~ 300 (986)
T 2iw3_A 228 VPETVHLLGATTFVAEVTPATLSIM----VPLLSRGLN--ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLK 300 (986)
T ss_dssp HHHHHHHHTTCCCCSCCCHHHHHHH----HHHHHHHHT--SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHH
T ss_pred hHHHHHHhhcCeeEeeecchhHHHH----HHHHHhhhc--cCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHH
Confidence 3445555544332 222233332 688888887 5578899999999999994 66766666653 3566666
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHh
Q 010533 450 QAMLKFPNAQQLQRSSCFMIRNL 472 (508)
Q Consensus 450 ~~L~~h~~~~~vq~~A~~aL~nL 472 (508)
+..... .+|+++..|-.|+.-|
T Consensus 301 ~~~~~~-~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 301 SNFATI-ADPEAREVTLRALKTL 322 (986)
T ss_dssp HHTTTC-CSHHHHHHHHHHHHHH
T ss_pred HHhhcc-CCHHHHHHHHHHHHHH
Confidence 666554 5788888887777776
No 82
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.51 E-value=0.15 Score=51.49 Aligned_cols=215 Identities=7% Similarity=0.054 Sum_probs=115.3
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhh
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~n 253 (508)
++..|.+=|.+ +++-+...|+.+|+.+.... ++ ....+.+.+.|. ..++-|...|+-+...+...+++
T Consensus 105 v~Nsl~kDl~~---~N~~iR~lALRtL~~I~~~~-----m~-~~l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe- 172 (355)
T 3tjz_B 105 VTSSLTKDMTG---KEDSYRGPAVRALCQITDST-----ML-QAIERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFD- 172 (355)
T ss_dssp GHHHHHHHHHS---SCHHHHHHHHHHHHHHCCTT-----TH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHH-
T ss_pred HHHHHHhhcCC---CcHhHHHHHHHHHhcCCCHH-----HH-HHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHH-
Confidence 35555555555 46778888999999887643 11 112233444444 45899999999999988766654
Q ss_pred HHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC--ChhHHH
Q 010533 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SSPSLI 331 (508)
Q Consensus 254 r~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~--d~~~~~ 331 (508)
+++ +.+..+-+++...+..++-+|..+|..+...|. . ++..|+.-+..+. ++-.+.
T Consensus 173 ---~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~----------------a~~kLv~~l~~~~l~~~~~q~ 230 (355)
T 3tjz_B 173 ---VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L----------------AVSKMISKFTRHGLKSPFAYC 230 (355)
T ss_dssp ---HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H----------------HHHHHHHHHHSSCCSCHHHHH
T ss_pred ---HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H----------------HHHHHHHHHhcCCCcChHHHH
Confidence 233 688889899987776788888888888875441 0 2344455555432 343333
Q ss_pred HHHHHHHHhhcCh--hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHh
Q 010533 332 SASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSA 409 (508)
Q Consensus 332 ~a~~aL~~La~~~--e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~ 409 (508)
.....+..+...+ +.... -++.|...|+ +.+..|+=+|+.+|-.|...+. .+. .-++..|..+|.
T Consensus 231 ~llr~l~~~~~~d~~~~~~~-----~~~~l~~~L~----~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLs 297 (355)
T 3tjz_B 231 MMIRVASRQLEDEDGSRDSP-----LFDFIESCLR----NKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCS 297 (355)
T ss_dssp HHHHHHTCC----------------------CCCC----CSSHHHHHHHHHHHTC---------------CCCTHHHHHH
T ss_pred HHHHHHHHhccccchhhHHH-----HHHHHHHHHc----CCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHc
Confidence 3333333333322 11111 2233444444 3345788899999888754221 121 244667777787
Q ss_pred ccCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010533 410 RFSDDASVLQEVMSIITVLSLRSPENAA 437 (508)
Q Consensus 410 ~~~~~~~v~e~a~~aL~~La~~~~~~~~ 437 (508)
++++.++--|+..|..+...+|+..+
T Consensus 298 --s~d~niryvaLr~L~~l~~~~P~~v~ 323 (355)
T 3tjz_B 298 --SPKAALRYAAVRTLNKVAMKHPSAVT 323 (355)
T ss_dssp --SSSSSSHHHHHHCC------------
T ss_pred --CCCchHHHHHHHHHHHHHHHCcHHHH
Confidence 67788999999999999988876543
No 83
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.29 Score=46.60 Aligned_cols=181 Identities=7% Similarity=0.074 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHH-hhcCChhhHHHHHH-cCcHHHHHHHHh-cCChHHHHHHHHHHHHhcCCCcch-hhhhhcc-hH
Q 010533 230 NEDPEILNSGFAVVAA-SATGNEVVKESYME-LKIDELILEILS-RQRNDSIQSLYDAIRVLLTPDDDQ-VVASQVY-GY 304 (508)
Q Consensus 230 ~~~~~v~~~a~~~L~~-l~~~~e~nr~~i~~-~G~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~dd~r-~~~~~a~-~~ 304 (508)
+.+-..+..++..|.. ++.+++.....-.+ ...+..|...|. ..+..++..||.+|..|+.+ -+ ..| . .|
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~--l~~~~f---~~~y 101 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK--LKTPGF---SKDY 101 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH--HCTTTS---CHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccccc---cHHH
Confidence 3466677778888887 75432211100001 124667777884 44446778899999998831 11 111 1 24
Q ss_pred HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-hhhHhH--HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHH
Q 010533 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKS--VAENGGIDALLRCIDDSGLQGNKTVARICCSL 381 (508)
Q Consensus 305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-~e~~~~--i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~a 381 (508)
... .++.+++.+++. .+.++..+..+|-.++.. +..... +- ..++.|+..|.+ .++.+...++.+
T Consensus 102 ~~~-----llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~--~ll~~l~~~l~~----k~~~vk~~al~~ 169 (249)
T 2qk1_A 102 VSL-----VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNE--DMLKDILEHMKH----KTPQIRMECTQL 169 (249)
T ss_dssp HHH-----HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTH--HHHHHHHHHTTC----SSHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHH--HHHHHHHHHHcC----CChHHHHHHHHH
Confidence 443 378999988764 366777777777666642 111000 00 123455555543 356899999999
Q ss_pred HHHhhC-Cchh-HH--HHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 382 LSKLAG-SDSN-KS--AIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 382 L~~La~-~~~~-k~--~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
|..++. .... .. ..+....+|.|..+|. ..++.|++.|..+|..++
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~--D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN--DTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence 999873 2221 11 1222367899999997 668999999999999987
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.31 E-value=0.99 Score=41.09 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=124.5
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhh
Q 010533 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (508)
Q Consensus 262 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La 341 (508)
.+..+++.|...-=-++.||...+..++..-. ..+ + -.+..|+-+++....-.+-...+.+++.++
T Consensus 33 ~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~------------el~-e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la 98 (253)
T 2db0_A 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTRE------------DLY-E-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMA 98 (253)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG------------GGH-H-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH------------HHH-H-HHHHHHHHHHhhcccCchHHHHHHHHhHHH
Confidence 55667777754322688999988888764221 011 1 235566666666433335567888888888
Q ss_pred c-ChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC-CchhHHHHHhCCcHHHHHHHHhccCCCHHHHH
Q 010533 342 V-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAG-SDSNKSAIIENGGMDKLIVVSARFSDDASVLQ 419 (508)
Q Consensus 342 ~-~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~-~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e 419 (508)
. +++....+ ||.|..-.+- +++.+.-+...+|..++- +|+.-..| +.-+..++. +.+..=+-
T Consensus 99 ~i~Pe~v~~v-----Vp~lfanyri----gd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smlt--skd~~Dkl 162 (253)
T 2db0_A 99 KEKPELVKSM-----IPVLFANYRI----GDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLS--SKNREDKL 162 (253)
T ss_dssp HHCHHHHHHH-----HHHHHHHSCC----CSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTS--CSSHHHHH
T ss_pred HhCHHHHHhh-----HHHHHHHHhc----CCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhc--CCChHHHH
Confidence 6 77765544 3555444433 345788888889998874 66554433 456777887 66666666
Q ss_pred HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhc
Q 010533 420 EVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMV 486 (508)
Q Consensus 420 ~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~ 486 (508)
.|+..|..|..+++... .-..|.|..+| |.++..|+..|..+|.|++.-||..|+.+.+.
T Consensus 163 ~aLnFi~alGen~~~yv-----~PfLprL~aLL--~D~deiVRaSaVEtL~~lA~~npklRkii~~k 222 (253)
T 2db0_A 163 TALNFIEAMGENSFKYV-----NPFLPRIINLL--HDGDEIVRASAVEALVHLATLNDKLRKVVIKR 222 (253)
T ss_dssp HHHHHHHTCCTTTHHHH-----GGGHHHHHGGG--GCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccc-----CcchHHHHHHH--cCcchhhhHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 77777777765544432 23567888888 55778888889999999999999988877653
No 85
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.75 E-value=7.4 Score=44.30 Aligned_cols=258 Identities=11% Similarity=0.089 Sum_probs=147.8
Q ss_pred HHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCC-CChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHH
Q 010533 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (508)
Q Consensus 122 ~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aL 200 (508)
..++.|+..+.+. .+. ..|+..+..+|... ..+..--.+. +.+|.++..+.. +...+...|-.++
T Consensus 54 ~~~~~~~~~~~~k--------~~~-~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d---k~~~v~~aa~~~~ 119 (986)
T 2iw3_A 54 HFFGELAKGIKDK--------KTA-ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGN---KDKEIQSVASETL 119 (986)
T ss_dssp HHHHHHHHHHTSH--------HHH-HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcc--------CCH-HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 4567777776653 222 78888999999652 1122222333 567777777654 3556665555555
Q ss_pred HHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHc--CcHHHHHHHHhcCChHHH
Q 010533 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRNDSI 278 (508)
Q Consensus 201 a~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~ 278 (508)
.++...-+. ..+ ...+|.|++.|... ..=.....++.++..++... .+.+... ..||.+.+.|-....++.
T Consensus 120 ~~~~~~~~~-~a~--~~~~~~~~~~~~~~-~kw~~k~~~l~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~d~k~~v~ 192 (986)
T 2iw3_A 120 ISIVNAVNP-VAI--KALLPHLTNAIVET-NKWQEKIAILAAFSAMVDAA---KDQVALRMPELIPVLSETMWDTKKEVK 192 (986)
T ss_dssp HHHHHHSCG-GGH--HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHhCCH-HHH--HHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHh---HHHHHHhccchhcchHhhcccCcHHHH
Confidence 544432211 122 45578888888642 33457778889998886433 3333321 477777777766666888
Q ss_pred HHHHHHHHHhcC---CCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh---HhHHhh
Q 010533 279 QSLYDAIRVLLT---PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI---CKSVAE 352 (508)
Q Consensus 279 ~~A~~aL~~L~~---~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~---~~~i~e 352 (508)
..|..++..+|. ++|.. .-||.|++.|.+- +-+..+...|+.-..-.+. --.+
T Consensus 193 ~~~~~~~~~~~~~~~n~d~~----------------~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l~~-- 251 (986)
T 2iw3_A 193 AAATAAMTKATETVDNKDIE----------------RFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATLSI-- 251 (986)
T ss_dssp HHHHHHHHHHGGGCCCTTTG----------------GGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCcchh----------------hhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhHHH--
Confidence 888888877763 33321 4589999988753 2233333334332221111 1111
Q ss_pred cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHh--CCcHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 010533 353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIE--NGGMDKLIVVSARFSDDASVLQEVMSIITVL 428 (508)
Q Consensus 353 ~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~--~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~L 428 (508)
-+|.|.+-|.. ....+.+.++-++.|++.--++...+.. ---+|-|-..... .++|++++-+-.++..|
T Consensus 252 --~~p~l~r~l~~----~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~-~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 252 --MVPLLSRGLNE----RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT-IADPEAREVTLRALKTL 322 (986)
T ss_dssp --HHHHHHHHHTS----SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT-CCSHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhhcc----CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc-cCCHHHHHHHHHHHHHH
Confidence 13555555653 2347889999999999853222222211 1233444444443 35799998888888777
No 86
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.19 E-value=0.76 Score=45.73 Aligned_cols=137 Identities=14% Similarity=0.181 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhc
Q 010533 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSAR 410 (508)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~ 410 (508)
..+...|.-|..+.....-++.+.||..+...+.-. +.++.+..|.+|-..+........= -...+|.+++.+..
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp----N~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP----NNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS----CHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecC----CcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhcc
Confidence 334444444444555567899999999998887642 4589999999998876543322111 12468999999998
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhh
Q 010533 411 FSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLKFPN-----AQQLQRSSCFMIRNLV 473 (508)
Q Consensus 411 ~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~h~~-----~~~vq~~A~~aL~nL~ 473 (508)
|. +..|.-.+.+.|+|...+......-.+..|++++|...+.+++. ++.-++-||..++|..
T Consensus 336 h~-eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 336 HP-DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp CC-CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred CC-CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 75 57888999999999998777777778889999999998765543 2344566888888854
No 87
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.17 E-value=5.1 Score=39.97 Aligned_cols=289 Identities=15% Similarity=0.154 Sum_probs=160.1
Q ss_pred ChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHH--hcCChHHHHHHHhcCCCCHHHHHHH
Q 010533 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSG 239 (508)
Q Consensus 162 ~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a 239 (508)
+.....-++++++|..+...... ++.++.....+.|..+.+. +.-.. -..-+|.++..+..+ ++.++.-.+
T Consensus 273 dSnAIDGFVk~DGv~~I~TvinY---pN~~l~RaG~KLLLQVSDa---ksL~~t~L~e~LPFi~~~i~~h-~eDdvvYSG 345 (619)
T 3c2g_A 273 DSDAIDGFVRSDGVGAITTVVQY---PNNDLIRAGCKLLLQVSDA---KALAKTPLENILPFLLRLIEIH-PDDEVIYSG 345 (619)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHTTC---GGGGTSCCTTHHHHHHHHHHHC-CCHHHHHHH
T ss_pred ccccccceeecccceeEEEEeec---CCcHHHHhhhheeeeecch---HHHhhccccccchHHHHHhccC-CCcceEEec
Confidence 55556778899999999988877 3677877777777665542 11111 134678888888865 678999999
Q ss_pred HHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh-------HHHHHHHHHHHHhc------------CCCcchhhhhh
Q 010533 240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------DSIQSLYDAIRVLL------------TPDDDQVVASQ 300 (508)
Q Consensus 240 ~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~-------~~~~~A~~aL~~L~------------~~dd~r~~~~~ 300 (508)
...|++........|+.-+..|+|++|-.++..... ....-||..++|-. ..+..+.+.|.
T Consensus 346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~ 425 (619)
T 3c2g_A 346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGP 425 (619)
T ss_dssp HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCH
T ss_pred chHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCCh
Confidence 999999987777788888899999999998876432 22333565554421 12333444443
Q ss_pred cch-HHHHHHhcCCHHHHHHHHhcCC-C-hhHHH---HHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHH
Q 010533 301 VYG-YARRFAKIGIARALVHSLHAGL-S-SPSLI---SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTV 374 (508)
Q Consensus 301 a~~-~~~~i~~~g~i~~Lv~lL~~~~-d-~~~~~---~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v 374 (508)
... .++.+.|...++.|+..|.-.. | +.+++ ....-..-+...+..-+ .| +++...+... . .+
T Consensus 426 ~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pk-----d~---~l~VtDd~rk-~--NL 494 (619)
T 3c2g_A 426 NEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPK-----DG---VLNVIDENRK-E--NL 494 (619)
T ss_dssp HHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCC-----TT---GGGCCCTTTC-C--CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCch-----hh---hccccchhhh-h--hh
Confidence 222 3444555567788888877533 4 32332 22221111222221111 11 1112222111 1 34
Q ss_pred HHHHHHHHHHhhC---C---chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHH--HHHHHHhcCCh----------hhH
Q 010533 375 ARICCSLLSKLAG---S---DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVM--SIITVLSLRSP----------ENA 436 (508)
Q Consensus 375 ~~~al~aL~~La~---~---~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~--~aL~~La~~~~----------~~~ 436 (508)
+-..|.++.---+ + .+-|+.+++ ..+..|+.+|.++.....|....- .+=.+|-.++. ..+
T Consensus 495 vGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~Vc 573 (619)
T 3c2g_A 495 IGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFIHNVLVVC 573 (619)
T ss_dssp HHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHHHHHHHHH
Confidence 4455555443322 1 234566665 467888888887654443332211 11111111110 123
Q ss_pred HHHHhcC--------cHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010533 437 ARAMEAG--------SGDLAIQAMLKFPNAQQLQRSSCFMIR 470 (508)
Q Consensus 437 ~~i~~~G--------~i~~Lv~~L~~h~~~~~vq~~A~~aL~ 470 (508)
..|++.. .-...++.++.|++ +++.+.|...|+
T Consensus 574 DKILeHcP~~Ad~W~i~r~tle~l~NHsN-sDIa~aasSLL~ 614 (619)
T 3c2g_A 574 DKILEHCPTRADIWTIDRPMLEGLTNHRN-SDIAKAANSLLS 614 (619)
T ss_dssp HHHHHHCTTHHHHSCCCHHHHHHHHTCSS-HHHHHHHHHHHT
T ss_pred HHHHHhCcchhccceechHHHHHHhcCCC-chHHHHHHHHHH
Confidence 3333321 23566788888864 666666666554
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.57 E-value=1.9 Score=48.93 Aligned_cols=222 Identities=11% Similarity=0.079 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC---CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~ 265 (508)
+......++.++.++..+..... ...++.++.+|..-. .++.++..++++|+..+..-..+.+.+. .+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHH
Confidence 44455566777777765432111 234555666553222 3789999999999987642222222111 35666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcC-
Q 010533 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVN- 343 (508)
Q Consensus 266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~- 343 (508)
|+..|. ..+...||++|..|+.+ .+..+ ..|.. ..+..|.+++.+.. +...+..+..+++.++..
T Consensus 551 l~~~l~---~~v~~~A~~al~~l~~~--~~~~l---~p~~~-----~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 551 LVRGLN---SSMSAQATLGLKELCRD--CQLQL---KPYAD-----PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHH---SSCHHHHHHHHHHHHHH--CHHHH---HHHHH-----HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhC---hHHHHHHHHHHHHHHHH--HHHhc---cccHH-----HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 777773 46788899999999832 22111 01222 34566677777643 456677777777777642
Q ss_pred -hhhHhHHhhcCCHHHHHHHHhccCCCC--cH---HHHHHHHHHHHHhhC---Cc--hhH------H--HHHhCCcHHHH
Q 010533 344 -DEICKSVAENGGIDALLRCIDDSGLQG--NK---TVARICCSLLSKLAG---SD--SNK------S--AIIENGGMDKL 404 (508)
Q Consensus 344 -~e~~~~i~e~Ggi~~Lv~lL~~~~~~~--~~---~v~~~al~aL~~La~---~~--~~k------~--~Iv~~Ggl~~L 404 (508)
.+.+....+ .-+++++..+....+.. +. .-...++..|..+.. .. +.. . .-.....++.+
T Consensus 618 ~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l 696 (971)
T 2x1g_F 618 RPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIF 696 (971)
T ss_dssp CTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHH
Confidence 122222221 12344444433211111 11 122233444433321 10 000 0 01123567888
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 405 IVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 405 v~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
..++..+..+..+.+.+|+++..++.
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHH
Confidence 88887666688999999999999763
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.47 E-value=8.8 Score=43.44 Aligned_cols=225 Identities=9% Similarity=0.027 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcC-----ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHH
Q 010533 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (508)
Q Consensus 234 ~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~-----~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i 308 (508)
+++..++.++..++..+...-...+. ..++..+..+... .+.+...++..+..++.....+..+. ..++...+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~-~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFN-NESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGC-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHc-CchHHHHH
Confidence 45667777777766544432111221 3566667777531 22566667777777764322111110 11333333
Q ss_pred HhcCCHHHHHHHHh----c-----------------CCC-hhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhcc
Q 010533 309 AKIGIARALVHSLH----A-----------------GLS-SPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS 366 (508)
Q Consensus 309 ~~~g~i~~Lv~lL~----~-----------------~~d-~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~ 366 (508)
++ +.++..|. . ..+ .+....+..+|..|+..-. ..+.. -.++.+...+...
T Consensus 339 i~----~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~~-~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 339 TE----QIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVTN-IFLAHMKGFVDQY 411 (960)
T ss_dssp HH----HTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHHH-HHHHHHHHHHHHH
T ss_pred HH----HHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHHH-HHHHHHHHHHHHh
Confidence 32 22222221 0 011 1233455556666665322 11111 0123333444421
Q ss_pred C--CCCcHHHHHHHHHHHHHhhCCchhHHHHHhC-----CcHH----HHHHHHhcc-CCCHHHHHHHHHHHHHHhcC-Ch
Q 010533 367 G--LQGNKTVARICCSLLSKLAGSDSNKSAIIEN-----GGMD----KLIVVSARF-SDDASVLQEVMSIITVLSLR-SP 433 (508)
Q Consensus 367 ~--~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-----Ggl~----~Lv~lL~~~-~~~~~v~e~a~~aL~~La~~-~~ 433 (508)
. ...+....+.|+.+++.++........-... ...+ .++..|... ..++.++..+|++|..++.. .+
T Consensus 412 ~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~ 491 (960)
T 1wa5_C 412 MSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK 491 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH
Confidence 0 1224568889999999997321100000000 1112 233334421 12799999999999999853 22
Q ss_pred hhHHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 434 ENAARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 434 ~~~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+.. ...++.+++.|. ..+..|+..||+||.+++.
T Consensus 492 ~~l-----~~~l~~l~~~L~--d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 492 AQL-----IELMPILATFLQ--TDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHH-----HHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTT
T ss_pred HHH-----HHHHHHHHHHhC--CCChhHHHHHHHHHHHHHh
Confidence 221 234667777774 2468899999999999876
No 90
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.25 E-value=1.9 Score=41.10 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCC---HHHHHHHHHHHHHhhc-CChhhHHHHHHcCcHHHH
Q 010533 191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASAT-GNEVVKESYMELKIDELI 266 (508)
Q Consensus 191 ~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~l~~-~~e~nr~~i~~~G~i~~L 266 (508)
.-.++|+..+-+++...+.|..|+++.-+-.|--+|...+.+ +-+.-..+.+++.+.. ++.+.-..++..+.+|..
T Consensus 71 nRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 71 NRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred hHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 446778888888887778889999999988888888765443 3456677788888764 334445556688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhh
Q 010533 267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346 (508)
Q Consensus 267 v~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~ 346 (508)
++.|..+++-...-|.-.+..+..+|..-.-+.+..+.--.+. ..+..++.-|...+++.+++.+..+--.|+.++..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA--MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence 9999998763333344445555544432111122222211121 23444444454445677888888887788877766
Q ss_pred HhHHh
Q 010533 347 CKSVA 351 (508)
Q Consensus 347 ~~~i~ 351 (508)
+..+.
T Consensus 229 r~aL~ 233 (268)
T 2fv2_A 229 REALR 233 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 91
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.83 E-value=3.3 Score=39.45 Aligned_cols=173 Identities=13% Similarity=0.218 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCCh----HHHH-HHHHHHHHhcCCCcchhhhhhcchHHHHHHh
Q 010533 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (508)
Q Consensus 236 ~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~----~~~~-~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~ 310 (508)
.+.++..+..+|+ |++.|..|++++..-.|...|+..+. +.++ ...+++..|...||..+ ...+.+
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV--------i~fLL~ 143 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV--------INFLLT 143 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH--------HHHHHh
Confidence 3455566666654 78899999999998889999987643 4444 46788888887776433 344557
Q ss_pred cCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcCh----------hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHH
Q 010533 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVND----------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (508)
Q Consensus 311 ~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~----------e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~ 380 (508)
.+.+|..+..|+.|++- .+.-+..-+..+-.++ |--..+.. .+..++.-| .+.+++.+.+..++
T Consensus 144 tEiiplCLrime~Gsel-SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~--vL~~mV~~l---~~~ps~RLLKhiir 217 (268)
T 2fv2_A 144 TEIIPLCLRIMESGSEL-SKTVATFILQKILLDDTGLAYICQTYERFSHVAM--ILGKMVLQL---SKEPSARLLKHVVR 217 (268)
T ss_dssp TTHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHT---TTSCCHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccHH-HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH--HHHHHHHHH---hcCCChHHHHHHHH
Confidence 88999999999998631 1222222233333333 22222211 122233323 23456789999999
Q ss_pred HHHHhhCCchhHHHHHhCCcHHH------HHHHHhccCCCHHHHHHHHHHHHHH
Q 010533 381 LLSKLAGSDSNKSAIIENGGMDK------LIVVSARFSDDASVLQEVMSIITVL 428 (508)
Q Consensus 381 aL~~La~~~~~k~~Iv~~Ggl~~------Lv~lL~~~~~~~~v~e~a~~aL~~L 428 (508)
+--.|+.|+..++++.. .+|. +-.+++ +++..++.-...+.|+
T Consensus 218 cYlRLsdn~rar~aL~~--~LP~~Lrd~tf~~~l~---~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 218 CYLRLSDNPRAREALRQ--CLPDQLKDTTFAQVLK---DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHTTSHHHHHHHHH--HSCGGGTSSTTHHHHT---SCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCHHHHHHHHH--hCcHHhhChHHHHHHh---cCHHHHHHHHHHHHhc
Confidence 99999999888888764 2222 223333 4666666655555554
No 92
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=92.76 E-value=10 Score=42.99 Aligned_cols=184 Identities=9% Similarity=0.042 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcc----hhhh--hhcchHH
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD----QVVA--SQVYGYA 305 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~----r~~~--~~a~~~~ 305 (508)
++-++..++|+|+..+..- .++.+ ..+++.++..|...+..++..||++|.+++..++. ...+ ..-..|.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred CceehHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 7899999999999987542 22222 23577788888765557888999999999864220 0000 0011222
Q ss_pred HHHHhcCCHHHHHHHHhcCC-Ch---hHHHHHHHHHHHhhc--ChhhHhHHhhcCCHHHHHHHHhccC-CCCcHHHHHHH
Q 010533 306 RRFAKIGIARALVHSLHAGL-SS---PSLISASIALKAVAV--NDEICKSVAENGGIDALLRCIDDSG-LQGNKTVARIC 378 (508)
Q Consensus 306 ~~i~~~g~i~~Lv~lL~~~~-d~---~~~~~a~~aL~~La~--~~e~~~~i~e~Ggi~~Lv~lL~~~~-~~~~~~v~~~a 378 (508)
. ..++.|+.++.... .+ .....+..+|..++. .++....+. .-++.|+..+.... +..++.+...+
T Consensus 547 ~-----~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~ 619 (960)
T 1wa5_C 547 E-----ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYT 619 (960)
T ss_dssp H-----HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred H-----HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2 24567777777641 00 012344445544432 122222111 12355555554321 12245677778
Q ss_pred HHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 379 CSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 379 l~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+.+|+.++. .++....+ ....+|.+...|..+. ....+.+...+..+.
T Consensus 620 ~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 620 FESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHH
Confidence 888888863 33333333 3346788888887433 345555555555443
No 93
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.64 E-value=5.2 Score=45.08 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHH
Q 010533 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (508)
Q Consensus 189 ~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~-~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv 267 (508)
+......++.++.++..+..... ..-++.++..|..-. +++.++..++++|+..+..-..+.+ +. ..+++.|+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHH
Confidence 44555566777777665432110 122445565553322 4788999999999987642222222 22 36888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCC-ChhHHHHHHHHHHHhhcC--h
Q 010533 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVN--D 344 (508)
Q Consensus 268 ~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~-d~~~~~~a~~aL~~La~~--~ 344 (508)
..|.. ..+...||++|..++.+ .+..+ ..|... .+..|..++.+.. +...+..+..+++.++.. .
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~--~~~~l---~p~~~~-----il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~ 603 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRE--CKYDL---PPYAAN-----IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV 603 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHH--TGGGC---TTTHHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHhCC--chHHHHHHHHHHHHHHH--HHHHH---HhhHHH-----HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH
Confidence 88854 57888899999999842 21111 122222 2455556666533 455667777777777642 2
Q ss_pred hhHhHHhhcCCHHHHHHHHhccCCC-CcHHHHH---HHHHHHHHhh---CC--ch---------------hHH--HHHhC
Q 010533 345 EICKSVAENGGIDALLRCIDDSGLQ-GNKTVAR---ICCSLLSKLA---GS--DS---------------NKS--AIIEN 398 (508)
Q Consensus 345 e~~~~i~e~Ggi~~Lv~lL~~~~~~-~~~~v~~---~al~aL~~La---~~--~~---------------~k~--~Iv~~ 398 (508)
+......+ .-++++...+....+. .+.+... ..+.+|..++ +. +. .+. .-+..
T Consensus 604 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (963)
T 2x19_B 604 EEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ 682 (963)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH
Confidence 33333222 1234444444321000 1222322 3444444432 11 10 001 11223
Q ss_pred CcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 399 GGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 399 Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
..++.+..++..+..++.+.+.+|.++..++
T Consensus 683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 4567777788777778899999999988864
No 94
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.55 E-value=1.6 Score=41.04 Aligned_cols=130 Identities=12% Similarity=0.179 Sum_probs=88.2
Q ss_pred hhHhHHhhcCCHHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHH
Q 010533 345 EICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS 416 (508)
Q Consensus 345 e~~~~i~e~Ggi~~Lv~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~ 416 (508)
+..+.+ ..||+..|++.|..... ..+.+....++.+|+.|..+..+...+++. +++..|...|. +.++.
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~~ 111 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN 111 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC--TTSHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC--CCCch
Confidence 556667 57899999998875321 114578889999999999888777777654 56888888887 77899
Q ss_pred HHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533 417 VLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~-~~-~~~i~~----------~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~ 479 (508)
++..++-.|+.+|.-.. +. ...+++ ..-...+++.++.. .+... +.+|+.+-|....+++.
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~-~~~~m~lIN~li~~~~d 184 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAEE 184 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHH-HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHH-HHHHHHHHHHHHCCCCC
Confidence 99999999999997432 22 222222 12234566655432 33343 46788888877666543
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.34 E-value=4.4 Score=40.60 Aligned_cols=89 Identities=11% Similarity=-0.064 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHH
Q 010533 372 KTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQA 451 (508)
Q Consensus 372 ~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~ 451 (508)
+-++..|+.+|.++...+ .-+. ..+.+.++|. ..+|-|+..|+.+...|...+|+..+ +.++.+-++
T Consensus 118 ~~iR~lALRtL~~I~~~~-m~~~-----l~~~lk~~L~--d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~l 184 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDST-MLQA-----IERYMKQAIV--DKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEA 184 (355)
T ss_dssp HHHHHHHHHHHHHHCCTT-THHH-----HHHHHHHHHT--CSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHH
T ss_pred HhHHHHHHHHHhcCCCHH-HHHH-----HHHHHHHHcC--CCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHH
Confidence 355555666666554322 1111 2234444554 44566666666666666655555322 345555555
Q ss_pred HHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 452 MLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 452 L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
+. ..++.|+-.|..+|..+..+
T Consensus 185 l~--d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 185 AS--SDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp TT--CSSHHHHHHHHHHHHHHHTT
T ss_pred hc--CCCccHHHHHHHHHHHHHhh
Confidence 52 23455555555555555443
No 96
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.11 E-value=5.5 Score=37.49 Aligned_cols=156 Identities=10% Similarity=0.035 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhc-cCCCCcHHHHHHHHHHHHHhhC--Cchh
Q 010533 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLLSKLAG--SDSN 391 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~-~~~~~~~~v~~~al~aL~~La~--~~~~ 391 (508)
..+...|-.+...++..-++.+|..+ .. .+.++.++.. ..+..+..|++.+..++..++. .++.
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~ 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TT------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cC------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 34445555554456777777777666 21 1223333332 2223467999999999998763 3331
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH---HHHHHHHcCCCcHHHHHHHHHH
Q 010533 392 KSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGSGD---LAIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 392 k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~i~---~Lv~~L~~h~~~~~vq~~A~~a 468 (508)
.++.+..... .+++.|++.|.-.+.--|.+ +.- ..-.. .+++-++.. .+.-||+..+|+
T Consensus 140 --------~l~~~~~W~~--d~n~~VRR~Ase~~rpW~~~-~~~------k~dp~~ll~iL~~L~~D-~s~yVrKSVan~ 201 (240)
T 3l9t_A 140 --------ALPIIDEWLK--SSNLHTRRAATEGLRIWTNR-PYF------KENPNEAIRRIADLKED-VSEYVRKSVGNA 201 (240)
T ss_dssp --------THHHHHHHHH--CSSHHHHHHHHHHTCSGGGS-TTT------TTCHHHHHHHHHTTTTC-SCHHHHHHHHHH
T ss_pred --------HHHHHHHHhc--CCCHHHHHHHHHhhHHHhcc-chh------hcCHHHHHHHHHHhcCC-hHHHHHHHHHHH
Confidence 5667777777 77899999888776543332 110 11122 233333332 346799999999
Q ss_pred HHHhhhcCccchHHHHhccccccHHHHhhhhhc
Q 010533 469 IRNLVARNPENSFCSVMVSRNLSDRQRRTTKSA 501 (508)
Q Consensus 469 L~nL~~~~~e~~~~~~~~g~~~~~~~~~~~~~~ 501 (508)
|+.++..+|+....+++.-..-........|.|
T Consensus 202 LrD~SK~~Pd~V~~~~~~w~~~~~~~~~i~k~A 234 (240)
T 3l9t_A 202 LRDISKKFPDLVKIELKNWKLESKEINQVYKLA 234 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred HHHHhhhCHHHHHHHHHHhhccCHhHHHHHHHH
Confidence 999999999999999987433345555555543
No 97
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.63 E-value=6.6 Score=44.40 Aligned_cols=217 Identities=7% Similarity=0.011 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHH---hcC--ChHHHHHHHHHHHHhcCCCcchhhhhhcchHHH
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL---SRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL---~~~--~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~ 306 (508)
+-...+.++.+++.++.+..... ...++.++.++ ... ...+...+||+|..++..- ....++..
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l------~~~~~~l~ 545 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWL------MENPAYIP 545 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHH------C----CHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHH------hcCHHHHH
Confidence 44567788888888765433211 13344455544 211 3356777999999887311 00011111
Q ss_pred HHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh--cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Q 010533 307 RFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE--NGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (508)
Q Consensus 307 ~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e--~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~ 384 (508)
..++.|+..| + +.+...+|.++.+++.. ....+.- .+-+..+..++.... .+.+....++.++..
T Consensus 546 -----~vl~~l~~~l-~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~--~~~~~~~~~~~ai~~ 612 (971)
T 2x1g_F 546 -----PAINLLVRGL-N---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGR--MKNSDSVRLMFSIGK 612 (971)
T ss_dssp -----HHHHHHHHHH-H---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTT--SCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHh-C---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHH
Confidence 2456666666 2 45788999999999842 1122211 112344556666421 123677788888888
Q ss_pred hhCC--chhHHHHHhCCcHHHHHHHHhccCC----CHHHHHHHHHHHHHHh---c--CC-----------hhhHHHHHhc
Q 010533 385 LAGS--DSNKSAIIENGGMDKLIVVSARFSD----DASVLQEVMSIITVLS---L--RS-----------PENAARAMEA 442 (508)
Q Consensus 385 La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~----~~~v~e~a~~aL~~La---~--~~-----------~~~~~~i~~~ 442 (508)
++.. ++......+ .-+++++..+..... ++........+|..|+ . .. ++....+ ..
T Consensus 613 i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 690 (971)
T 2x1g_F 613 LMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLV-MQ 690 (971)
T ss_dssp HHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHH-HH
T ss_pred HHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHH-HH
Confidence 7642 233333322 244566655442211 2223333333333332 1 11 1111111 23
Q ss_pred CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 443 GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 443 G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
...+.+..++..+.++..+.+.+|++++.++.
T Consensus 691 ~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 691 RTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 46778888887777778899999999999764
No 98
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.78 E-value=14 Score=41.44 Aligned_cols=219 Identities=10% Similarity=0.025 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhc---CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHH
Q 010533 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR---QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARR 307 (508)
Q Consensus 231 ~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~---~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~ 307 (508)
.+-...+.++.+++.++.+..... ...++.++..+.. +...+...+||++..++..- . ++.+
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l------~---~~~~- 525 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL------A---DHPV- 525 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHH------H---HCHH-
T ss_pred CchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH------H---hCHH-
Confidence 456778888999988865433211 1234445555432 23356778999999886310 0 1111
Q ss_pred HHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhh--cCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh
Q 010533 308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE--NGGIDALLRCIDDSGLQGNKTVARICCSLLSKL 385 (508)
Q Consensus 308 i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e--~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L 385 (508)
.. ...++.|+..|.+ +.+...+|.+|.+++.. ....+.- ..-+..|..++... + .+......++.+++.+
T Consensus 526 ~l-~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~-~-~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 526 MI-NSVLPLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQ-I-HKTSQCMWLMQALGFL 597 (963)
T ss_dssp HH-TTTHHHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTT-C-SCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccC-C-CChHHHHHHHHHHHHH
Confidence 22 2578888888743 67889999999999842 1122221 01123344455532 1 1246788888888888
Q ss_pred hCC-c-hhHHHHHhCCcHHHHHHHHhc---cCCCHHHHH---HHHHHHHHHhc--C--Ch------------------hh
Q 010533 386 AGS-D-SNKSAIIENGGMDKLIVVSAR---FSDDASVLQ---EVMSIITVLSL--R--SP------------------EN 435 (508)
Q Consensus 386 a~~-~-~~k~~Iv~~Ggl~~Lv~lL~~---~~~~~~v~e---~a~~aL~~La~--~--~~------------------~~ 435 (508)
+.. + +.....++ ..+++++..+.. ...++..+. ....+|+.+.. + .+ +.
T Consensus 598 ~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (963)
T 2x19_B 598 LSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNP 676 (963)
T ss_dssp HTTSCHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCH
T ss_pred HhcCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCc
Confidence 642 2 33333332 345566555542 122444433 23333333321 1 11 11
Q ss_pred HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 436 AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 436 ~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
...+ .....+.+.+++..+..+..+.+.+|.+++.++.
T Consensus 677 ~~~~-~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 677 VVVV-LQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 1122 2335677777787777778888999999999864
No 99
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.20 E-value=7 Score=39.59 Aligned_cols=130 Identities=12% Similarity=0.183 Sum_probs=88.2
Q ss_pred hhHhHHhhcCCHHHHHHHHhccCC-------CCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHH
Q 010533 345 EICKSVAENGGIDALLRCIDDSGL-------QGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS 416 (508)
Q Consensus 345 e~~~~i~e~Ggi~~Lv~lL~~~~~-------~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~ 416 (508)
+..+.+. .||+..|++.|..... ..+......++.+|+.|..+..+...+... +++..|...|. +.++.
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~--s~~~~ 115 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN 115 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC--TTSHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC--CCCch
Confidence 4556664 6899999988864311 114578899999999999888777766654 57888888887 77899
Q ss_pred HHHHHHHHHHHHhcCCh-hh-HHHHH----------hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccc
Q 010533 417 VLQEVMSIITVLSLRSP-EN-AARAM----------EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPEN 479 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~-~~-~~~i~----------~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~ 479 (508)
++..++-.|+.+|.-.. +. ...++ +..-...+++.++.+ .+... +.+|+.+-|....+++.
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~-~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAEE 188 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHH-HHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHH-HHHHHHHHHHHHCCCCC
Confidence 99999999999997443 22 22222 122345566766543 33444 46788888877666553
No 100
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.95 E-value=8.9 Score=38.75 Aligned_cols=129 Identities=12% Similarity=0.181 Sum_probs=88.4
Q ss_pred hhHhHHhhcCCHHHHHHHHhccC-------CCCcHHHHHHHHHHHHHhhCCchhHHHHHhC-CcHHHHHHHHhccCCCHH
Q 010533 345 EICKSVAENGGIDALLRCIDDSG-------LQGNKTVARICCSLLSKLAGSDSNKSAIIEN-GGMDKLIVVSARFSDDAS 416 (508)
Q Consensus 345 e~~~~i~e~Ggi~~Lv~lL~~~~-------~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~-Ggl~~Lv~lL~~~~~~~~ 416 (508)
...+.++ .+|+..|+++|.... ...+......++.+|+.|..+..+...+++. .++..|..+|. +.++.
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~--s~~~~ 177 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPN 177 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC--TTSHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC--CCchH
Confidence 5566676 789999999986321 0123578889999999999888777777654 46899999887 77899
Q ss_pred HHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 417 VLQEVMSIITVLSLRSP-EN-AARAME----------AGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~-~~-~~~i~~----------~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
++..++-.|+.+|.-+. ++ ...+++ ..-...++..|+.. .+... +.+|+.+-|....+++
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~-~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIAL-KVGCLQLINALITPAE 249 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHH-HHHHHHHHHHHHcCCC
Confidence 99999999999997542 33 333322 22355666666543 33444 3577877787665543
No 101
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=88.60 E-value=5.3 Score=45.64 Aligned_cols=313 Identities=10% Similarity=0.076 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc---chhHHHhcCC
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---STETFRTGGG 218 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~---~~~~i~~~gg 218 (508)
+.+....+|..|..+..- -+. ..+...+.++.+.++|.. .++...|+.+|..+..... .+..++..=.
T Consensus 206 ~~~l~~~~L~~l~s~i~w--i~~--~~i~~~~ll~~l~~~L~~-----~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 206 NYGTVGLCLQVYAQWVSW--INI--NLIVNEPCMNLLYSFLQI-----EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp CHHHHHHHHHHHHHHTTT--SCH--HHHHCHHHHHHHHHHTTS-----HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh--cCH--HhhhcchHHHHHHHHcCC-----hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 456667888888888763 232 255666778888877754 4666777777777665332 1222222201
Q ss_pred hHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-------CC----hhhHHHHH--HcCcHHHHHHHHhcCChHHHHHHHHHH
Q 010533 219 PKLLVNILIDGNEDPEILNSGFAVVAASAT-------GN----EVVKESYM--ELKIDELILEILSRQRNDSIQSLYDAI 285 (508)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-------~~----e~nr~~i~--~~G~i~~Lv~lL~~~~~~~~~~A~~aL 285 (508)
+..++..+....+|.++.+..++.+..++. .. ++.+.... -.+.++.++..+..+++++-..++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 111111111113466665554544433321 11 11111111 125778888888776665555444444
Q ss_pred HHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC----h-----------hHHHHHHHHHHHhhc-ChhhHhH
Q 010533 286 RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS----S-----------PSLISASIALKAVAV-NDEICKS 349 (508)
Q Consensus 286 ~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d----~-----------~~~~~a~~aL~~La~-~~e~~~~ 349 (508)
..+.........-....+..+.+.. ..++.++.-++--.+ . +...++...+..++. .++.+-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~ 435 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSS 435 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 3332110000000000011111110 123333333331100 0 222333322222222 2222221
Q ss_pred -HhhcCCHHHHHHHHhccC---CCCcHHHHHHHHHHHHHhhCC-chhHHHH-HhCCcHHHHHHHHhcc-------CCCHH
Q 010533 350 -VAENGGIDALLRCIDDSG---LQGNKTVARICCSLLSKLAGS-DSNKSAI-IENGGMDKLIVVSARF-------SDDAS 416 (508)
Q Consensus 350 -i~e~Ggi~~Lv~lL~~~~---~~~~~~v~~~al~aL~~La~~-~~~k~~I-v~~Ggl~~Lv~lL~~~-------~~~~~ 416 (508)
+.+ .+...+.... ...++.-.+.++.+|..++.. ..+...+ -....+|.|+.+|.+- ..++.
T Consensus 436 ~~~~-----~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~ 510 (980)
T 3ibv_A 436 YMYS-----AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPL 510 (980)
T ss_dssp HHHH-----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHH
T ss_pred HHHH-----HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHH
Confidence 110 2222332211 112467889999999999852 2211111 0112334444433221 35789
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhhc
Q 010533 417 VLQEVMSIITVLSLRSPENAARAMEAGSGDLAIQAMLK----FPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 417 v~e~a~~aL~~La~~~~~~~~~i~~~G~i~~Lv~~L~~----h~~~~~vq~~A~~aL~nL~~~ 475 (508)
|+..+|+++...+.--.. ....++.+++.+-. +..++.|+..||.++.+++..
T Consensus 511 V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 511 VQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp HHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 999999999987642111 12345666666544 224568999999999999864
No 102
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.31 E-value=15 Score=37.15 Aligned_cols=152 Identities=14% Similarity=0.155 Sum_probs=93.2
Q ss_pred hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHH
Q 010533 211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~ 280 (508)
..|. .+|+..|+++|..- ..+...+..+++||..+. .+......++.. .++..|...|.+....+...
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 4555 67899999988531 234578889999999885 455566666644 68888888887766677777
Q ss_pred HHHHHHHhcCCCc--c-hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--Chh--h----HhH
Q 010533 281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDE--I----CKS 349 (508)
Q Consensus 281 A~~aL~~L~~~dd--~-r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e--~----~~~ 349 (508)
+...|..+|..++ . ....-.+.++.+...+..-..++++.|+...+.+... +|..|-|... .++ . ...
T Consensus 182 aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~e 260 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSE 260 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8888888886554 1 1111123344444345567888999888654444433 3444444322 222 2 233
Q ss_pred HhhcCCHHHHHHHHhcc
Q 010533 350 VAENGGIDALLRCIDDS 366 (508)
Q Consensus 350 i~e~Ggi~~Lv~lL~~~ 366 (508)
+... |+..++.-|+..
T Consensus 261 f~~~-Gl~~il~~lr~~ 276 (383)
T 3eg5_B 261 LMRL-GLHQVLQELREI 276 (383)
T ss_dssp HHHT-THHHHHHHHTTS
T ss_pred HHHC-ChHHHHHHHhcC
Confidence 4455 556666667753
No 103
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.47 E-value=8.6 Score=35.88 Aligned_cols=151 Identities=15% Similarity=0.156 Sum_probs=88.9
Q ss_pred hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHH
Q 010533 211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~ 280 (508)
..| ..+|+..|+++|... ..+...+..+++||..++ .+......++.. +++..|...|.+....+...
T Consensus 38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 455 468888888888642 114577888999999885 455556666644 68888888887666566677
Q ss_pred HHHHHHHhcCCCc--c-hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-C-hh------hHhH
Q 010533 281 LYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-N-DE------ICKS 349 (508)
Q Consensus 281 A~~aL~~L~~~dd--~-r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~-~e------~~~~ 349 (508)
+...|..+|...+ . ....-.+.++.+...+..-..++++.|++..+.+.. .+|..+-|... . ++ ....
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~~~m~lIN~li~~~~dl~~R~~lR~e 194 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLINALITPAEELDFRVHIRSE 194 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHH-HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 7888888886543 1 111112333333333445677888888754343333 33444444322 2 21 1233
Q ss_pred HhhcCCHHHHHHHHhc
Q 010533 350 VAENGGIDALLRCIDD 365 (508)
Q Consensus 350 i~e~Ggi~~Lv~lL~~ 365 (508)
+... |+..+++-|+.
T Consensus 195 f~~~-Gl~~il~~l~~ 209 (233)
T 2f31_A 195 LMRL-GLHQVLQELRE 209 (233)
T ss_dssp HHHT-THHHHHHHHHH
T ss_pred HHHC-ChHHHHHHHhc
Confidence 4444 56666667765
No 104
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=87.45 E-value=22 Score=34.59 Aligned_cols=138 Identities=10% Similarity=0.047 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHHHc--CcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH
Q 010533 232 DPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (508)
Q Consensus 232 ~~~v~~~a~~~L~~l~~~~e~nr~~i~~~--G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~ 309 (508)
.+..+-.+++++.|+. .++..|+.+... .++..+...+...+..++..++.++.|++.---... ..+...
T Consensus 161 ~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~----~~~~~~--- 232 (304)
T 3ebb_A 161 KPANQLLALRTFCNCF-VGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH----NIEGKA--- 232 (304)
T ss_dssp CHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC----CHHHHH---
T ss_pred ChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC----CchHHH---
Confidence 4566788999999985 567788877753 233333333333334566667777888873110000 001111
Q ss_pred hcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHH
Q 010533 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (508)
Q Consensus 310 ~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL 382 (508)
..+..+..+++...|.+.+..+..||++|...+.....+.+.=++...++-+.+... + .-+.+|+..|
T Consensus 233 --~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~-~--~kv~~~~~~~ 300 (304)
T 3ebb_A 233 --QCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE-P--AKVSECCRFI 300 (304)
T ss_dssp --HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCS-S--HHHHHHHHHH
T ss_pred --HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCC-c--hhHHHHHHHH
Confidence 134556666666568889999999999998755555555544444544444443322 2 2344555544
No 105
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=86.04 E-value=1.7 Score=50.02 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHHHHhhCCch-h--HHHHHhCCcHHHHHHHHhccCC---CHHHHHHHHHHHHHHhc---CChhhHHHHH
Q 010533 370 GNKTVARICCSLLSKLAGSDS-N--KSAIIENGGMDKLIVVSARFSD---DASVLQEVMSIITVLSL---RSPENAARAM 440 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~~-~--k~~Iv~~Ggl~~Lv~lL~~~~~---~~~v~e~a~~aL~~La~---~~~~~~~~i~ 440 (508)
.+....+.++.+++.+++... . +..+. ..++.|++++....+ .+.++..+|++|...+. ++++.-..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~-- 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT-- 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHH--
Confidence 467899999999999997542 2 22233 467888888862111 23455678898887552 34443222
Q ss_pred hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhc
Q 010533 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVAR 475 (508)
Q Consensus 441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~ 475 (508)
.+..|++.| +.++++|+..|||++.+++..
T Consensus 541 ---vl~~L~~~l--~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 541 ---VILKLFEFM--HETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp ---HHHHHHHHT--TCSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHh--hcCCHHHHHHHHHHHHHHHHH
Confidence 233455555 445688999999999999864
No 106
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=85.91 E-value=10 Score=37.10 Aligned_cols=161 Identities=6% Similarity=0.035 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHH-HHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR-CIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 314 i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~-lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (508)
+..|..++++ + .+.+..+.-.++-++.++.....+.+.+.-..++. ++....+...+..+--+++++.|+..++..+
T Consensus 105 l~~l~kil~W-P-~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 105 LQILWKAINC-P-EDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHTS-C-TTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHcC-C-HHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 3445555432 2 12233333434333444444444433333233442 2222111223456778899999999898888
Q ss_pred HHHHhCCcHHHHHHHHhcc--CCCHHHHHHHHHHHHHHhcCChhh--HHHHHhcCcHHHHHHHHHcCCCcHHHHHHHHHH
Q 010533 393 SAIIENGGMDKLIVVSARF--SDDASVLQEVMSIITVLSLRSPEN--AARAMEAGSGDLAIQAMLKFPNAQQLQRSSCFM 468 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~~aL~~La~~~~~~--~~~i~~~G~i~~Lv~~L~~h~~~~~vq~~A~~a 468 (508)
..+... ...+++.+... ..+..++-.+...+.|++...... .... .-....+.+++.. ..+.+....+..|
T Consensus 183 ~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~~l~~il~~-~~d~EalyR~LvA 257 (304)
T 3ebb_A 183 KLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK--AQCLSLISTILEV-VQDLEATFRLLVA 257 (304)
T ss_dssp HHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence 887753 34455544321 357889999999999998632110 0010 0133444455543 4567777888999
Q ss_pred HHHhhhcCccchH
Q 010533 469 IRNLVARNPENSF 481 (508)
Q Consensus 469 L~nL~~~~~e~~~ 481 (508)
|.+++...++..+
T Consensus 258 LGtL~~~~~~~~~ 270 (304)
T 3ebb_A 258 LGTLISDDSNAVQ 270 (304)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHhCChhHHH
Confidence 9999976555443
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=84.29 E-value=6.3 Score=45.26 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHHHHhhcC--hhhHhHHhhcCCHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhhCCc-hhHHHHHhCCcH
Q 010533 326 SSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQ-GNKTVARICCSLLSKLAGSD-SNKSAIIENGGM 401 (508)
Q Consensus 326 d~~~~~~a~~aL~~La~~--~e~~~~i~e~Ggi~~Lv~lL~~~~~~-~~~~v~~~al~aL~~La~~~-~~k~~Iv~~Ggl 401 (508)
+=..++.+|++++.++.. ++....++- ..++.|++++...... ....+...+|++|+.++..- .+...+- ..+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 345788999999999863 221222221 2467888888642111 11234457789998876421 1111110 123
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------cCcHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh
Q 010533 402 DKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAME------AGSGDLAIQAMLK--FPNAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~------~G~i~~Lv~~L~~--h~~~~~vq~~A~~aL~nL~ 473 (508)
..|++.|. .+++.+++.||+++.+||. +++..++. ...++.+++.+.. ..-...-......+|..++
T Consensus 543 ~~L~~~l~--~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 543 LKLFEFMH--ETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHTT--CSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh--cCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33444443 4568999999999999995 34444542 1234444443221 1123343456666777777
Q ss_pred hcCc
Q 010533 474 ARNP 477 (508)
Q Consensus 474 ~~~~ 477 (508)
...|
T Consensus 618 ~~~~ 621 (1023)
T 4hat_C 618 SEER 621 (1023)
T ss_dssp TTCC
T ss_pred HhCC
Confidence 6433
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.34 E-value=37 Score=33.51 Aligned_cols=204 Identities=10% Similarity=0.079 Sum_probs=133.6
Q ss_pred HHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHH
Q 010533 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS 334 (508)
Q Consensus 255 ~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~ 334 (508)
+.+...+.+..|+..|..-+=+..+.++....++..... +.....+..+.. --+.|..++....++++--...
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~-----~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G 144 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQI-----GTRTPTVEYICT--QQNILFMLLKGYESPEIALNCG 144 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCB-----TTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhccc-----CCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHH
Confidence 344556888888888876555777877777777765431 111223344543 2333333344332344433443
Q ss_pred HHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHh-hCCchhHHHHHhCC---cHHHHHHHHhc
Q 010533 335 IALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKL-AGSDSNKSAIIENG---GMDKLIVVSAR 410 (508)
Q Consensus 335 ~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~L-a~~~~~k~~Iv~~G---gl~~Lv~lL~~ 410 (508)
..|+.....+..++.|...+.+..+.+.++. ++.+|...|+..++.| ..+........... .....-.+|.
T Consensus 145 ~mLRecir~e~la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~- 219 (341)
T 1upk_A 145 IMLRECIRHEPLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH- 219 (341)
T ss_dssp HHHHHHHTSHHHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc-
Confidence 4455566677777888888776666665553 4689999999999997 45665555555544 3566777887
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc----CcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhh
Q 010533 411 FSDDASVLQEVMSIITVLSLRSPENAARAMEA----GSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 411 ~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~----G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
+++--.+++++-.|..|-+ ++.|...+... .-+..++.+|+. .+..+|-+|-....-.++
T Consensus 220 -S~NYVTkRQSlKLLgelLl-dr~N~~vM~~Yis~~~nLkl~M~LL~d--~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 220 -SENYVTKRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRD--KSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp -CSSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHH
T ss_pred -CCcchhHHHHHHHHHHHHh-CchHHHHHHHHhCCHHHHHHHHHHhcC--chhchhhhhhhheeeeee
Confidence 7888999999999999986 66776655542 235667777754 457889999888777776
No 109
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=80.83 E-value=32 Score=34.64 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=90.1
Q ss_pred hHHHhcCChHHHHHHHhcC---------CCCHHHHHHHHHHHHHhhcCChhhHHHHHHc-CcHHHHHHHHhcCChHHHHH
Q 010533 211 ETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYMEL-KIDELILEILSRQRNDSIQS 280 (508)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~-G~i~~Lv~lL~~~~~~~~~~ 280 (508)
..|. .+|+..|+.+|.+. ..+...+..+++||..++ .+......++.. +++..|...|.+....+...
T Consensus 42 ~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~ 119 (386)
T 2bnx_A 42 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAVPNMMID 119 (386)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 3453 67888888888532 114677888999999885 445556666654 68888888887655566666
Q ss_pred HHHHHHHhcCCCcc---hhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc-C-hh------hHhH
Q 010533 281 LYDAIRVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-N-DE------ICKS 349 (508)
Q Consensus 281 A~~aL~~L~~~dd~---r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~-~-~e------~~~~ 349 (508)
+...|..+|...+. ....=.+.++.....+..-..+||+.++.+.+.+.. .+|..+-|... . ++ ....
T Consensus 120 vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~a~m~lIN~lv~~~~dl~~R~~LR~E 198 (386)
T 2bnx_A 120 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLINALITPAEELDFRVHIRSE 198 (386)
T ss_dssp HHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHH-HHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 77778878865531 111112333333333445678899988765444443 34444444322 2 21 2334
Q ss_pred HhhcCCHHHHHHHHhcc
Q 010533 350 VAENGGIDALLRCIDDS 366 (508)
Q Consensus 350 i~e~Ggi~~Lv~lL~~~ 366 (508)
+... |+..++.-|+..
T Consensus 199 f~~~-GL~~il~~Lr~~ 214 (386)
T 2bnx_A 199 LMRL-GLHQVLQELREI 214 (386)
T ss_dssp HHHT-THHHHHHHHTTC
T ss_pred HHHC-ChHHHHHHHhcc
Confidence 4444 566667777753
No 110
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=79.13 E-value=62 Score=36.76 Aligned_cols=191 Identities=8% Similarity=0.021 Sum_probs=104.9
Q ss_pred cHHHHHHHHhc-----CChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHH-hcCCHHHHHHHHhc--C---CChhHH
Q 010533 262 IDELILEILSR-----QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHA--G---LSSPSL 330 (508)
Q Consensus 262 ~i~~Lv~lL~~-----~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~-~~g~i~~Lv~lL~~--~---~d~~~~ 330 (508)
.++.|+.++.+ ....++..+|+++...+.. +. ....++++++.+-+ + +++.+.
T Consensus 491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~----------------~~~~~~~l~~~L~~ll~~~gl~~~~~~V~ 554 (980)
T 3ibv_A 491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF----------------FDYESAAIPALIEYFVGPRGIHNTNERVR 554 (980)
T ss_dssp HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG----------------GGTCCTTHHHHHHHHTSTTTTTCCCTTTH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH----------------HhcCchhHHHHHHHHhccccccCCChhHH
Confidence 34556666652 2236777899999877632 11 12467788777766 3 245688
Q ss_pred HHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCC------C-Cc------HH--------HHHHHHHHHHHhh---
Q 010533 331 ISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGL------Q-GN------KT--------VARICCSLLSKLA--- 386 (508)
Q Consensus 331 ~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~------~-~~------~~--------v~~~al~aL~~La--- 386 (508)
..+|.++.+++..- +..+. +=++.++..+...-. . .+ .+ =+-....+++.|.
T Consensus 555 ~~a~~af~~f~~~~--~~~L~--~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~ 630 (980)
T 3ibv_A 555 PRAWYLFYRFVKSI--KKQVV--NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSG 630 (980)
T ss_dssp HHHHHHHHHHHHHT--TTTCS--SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh--hHHhh--hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCC
Confidence 89999999988521 11221 234555555432111 0 00 01 1222344444443
Q ss_pred CC-chhHHHHHhCCcHHHHHHHHhccC----C--CHH-HHHHHHHHHHHHhcCChhh------HHHHHhcCcHHHHHHHH
Q 010533 387 GS-DSNKSAIIENGGMDKLIVVSARFS----D--DAS-VLQEVMSIITVLSLRSPEN------AARAMEAGSGDLAIQAM 452 (508)
Q Consensus 387 ~~-~~~k~~Iv~~Ggl~~Lv~lL~~~~----~--~~~-v~e~a~~aL~~La~~~~~~------~~~i~~~G~i~~Lv~~L 452 (508)
+. ++.+....+ ..+++++.-+.... . ++. ...+.+.+|.+++.+-++. ...+. ....+.+..++
T Consensus 631 ~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f-~~~~~~il~~l 708 (980)
T 3ibv_A 631 NLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASF-NKASDEIFLIL 708 (980)
T ss_dssp CCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHH-HHHHHHHHHHH
Confidence 32 344444433 34566666554221 1 211 2235677778887543221 22222 23567777888
Q ss_pred HcCCCcHHHHHHHHHHHHHhhh
Q 010533 453 LKFPNAQQLQRSSCFMIRNLVA 474 (508)
Q Consensus 453 ~~h~~~~~vq~~A~~aL~nL~~ 474 (508)
..++++..|+..+|.+++.++.
T Consensus 709 ~~~~~~~~irea~~~~~~r~i~ 730 (980)
T 3ibv_A 709 DRMGFNEDIRGAVRFTSGRIIN 730 (980)
T ss_dssp HHSCCSHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHH
Confidence 8888889999999999998864
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=76.95 E-value=60 Score=32.02 Aligned_cols=174 Identities=10% Similarity=0.037 Sum_probs=123.0
Q ss_pred HHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChh-----hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHH
Q 010533 305 ARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-----ICKSVAENGGIDALLRCIDDSGLQGNKTVARICC 379 (508)
Q Consensus 305 ~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e-----~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al 379 (508)
+..+...+.+..|+..|..- +-+...+++....++..... ....+.. --+.|.-++. +.+.+ ++.-.+=
T Consensus 71 ~~ei~~~dll~~Li~~l~~L-~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~-gYe~~--diAl~~G 144 (341)
T 1upk_A 71 AQELYNSGLLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLK-GYESP--EIALNCG 144 (341)
T ss_dssp HHHHHHHSHHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHH-GGGST--TTHHHHH
T ss_pred HHHHHHhCHHHHHHHhcccC-CchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHH-hhccc--hhHhHHH
Confidence 34566668888888888765 45677788777777665321 1223333 2233443444 44444 7777888
Q ss_pred HHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc---HHHHHHHHHcCC
Q 010533 380 SLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSLRSPENAARAMEAGS---GDLAIQAMLKFP 456 (508)
Q Consensus 380 ~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~---i~~Lv~~L~~h~ 456 (508)
..|+.+..++.....|...+.+..+.+.+. .++-.|...|..++..|-.++.......+.... ....-++| .+
T Consensus 145 ~mLRecir~e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll--~S 220 (341)
T 1upk_A 145 IMLRECIRHEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL--HS 220 (341)
T ss_dssp HHHHHHHTSHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHhHHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh--cC
Confidence 889999999999999999898999999888 778999999999999988888888888887765 34455555 34
Q ss_pred CcHHHHHHHHHHHHHhhhc--CccchHHHHhccc
Q 010533 457 NAQQLQRSSCFMIRNLVAR--NPENSFCSVMVSR 488 (508)
Q Consensus 457 ~~~~vq~~A~~aL~nL~~~--~~e~~~~~~~~g~ 488 (508)
++-.+++++.-.|..+... |.......+..+.
T Consensus 221 ~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~ 254 (341)
T 1upk_A 221 ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPE 254 (341)
T ss_dssp SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHH
T ss_pred CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHH
Confidence 6789999999999998763 3444444444443
No 112
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=76.69 E-value=16 Score=42.11 Aligned_cols=111 Identities=11% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCC---ChhHHHHHHHHHHHhh----cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533 314 ARALVHSLHAGL---SSPSLISASIALKAVA----VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (508)
Q Consensus 314 i~~Lv~lL~~~~---d~~~~~~a~~aL~~La----~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La 386 (508)
+..+..+++... ++.+...+..+++.|. .++..|.. ..++.+.+.+....+..+.+-..-++.+|+|+.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g 468 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 468 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence 455556665421 3444455555665554 33333321 124555544432211223355667788888864
Q ss_pred CCchhHHHHHhCCcHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010533 387 GSDSNKSAIIENGGMDKLIVVSARF-----SDDASVLQEVMSIITVLSLRSPENAAR 438 (508)
Q Consensus 387 ~~~~~k~~Iv~~Ggl~~Lv~lL~~~-----~~~~~v~e~a~~aL~~La~~~~~~~~~ 438 (508)
. + ..++.|..++... +....++..|+++|..++...|+..+.
T Consensus 469 ~-p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~ 515 (1056)
T 1lsh_A 469 Q-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQE 515 (1056)
T ss_dssp C-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHH
T ss_pred C-h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHH
Confidence 3 3 2456666666421 223578888999999988776654443
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=75.00 E-value=52 Score=30.86 Aligned_cols=151 Identities=10% Similarity=0.058 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHH-HhcCCChhHHHHHHHHHHHhh
Q 010533 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS-LHAGLSSPSLISASIALKAVA 341 (508)
Q Consensus 263 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~l-L~~~~d~~~~~~a~~aL~~La 341 (508)
.+.+-..+...+-.++..++.+|..++..-.... ........++ ...++.|++- |.+. .+.+...+..++..++
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~---~~~~~~~~~~-~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~ 131 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS---LKNAHNITLI-STWTPLLVEKGLTSS-RATTKTQSMSCILSLC 131 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC------CCHHHHHHHH-HHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh---cccchhHHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHH
Confidence 3444455554444677778888877653211000 0001111111 1346667653 3332 3445566666654443
Q ss_pred cChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh---CCch-hHHHHHhCCcHHHHHHHHhccCCCHHH
Q 010533 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA---GSDS-NKSAIIENGGMDKLIVVSARFSDDASV 417 (508)
Q Consensus 342 ~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La---~~~~-~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v 417 (508)
... +....++..+.....+.++.++..++..|..+- |... +....+. ..++.+..+|. ..++.|
T Consensus 132 ~~~---------~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~--d~~~~V 199 (278)
T 4ffb_C 132 GLD---------TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG--HGDRNV 199 (278)
T ss_dssp HTS---------SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT--CSSHHH
T ss_pred Hhc---------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh--CCcHHH
Confidence 211 122233333333333446789999999998864 2111 1111111 23455667776 678999
Q ss_pred HHHHHHHHHHHhc
Q 010533 418 LQEVMSIITVLSL 430 (508)
Q Consensus 418 ~e~a~~aL~~La~ 430 (508)
++.|..++..|..
T Consensus 200 R~aA~~l~~~ly~ 212 (278)
T 4ffb_C 200 RSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 114
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=67.67 E-value=1.8e+02 Score=33.63 Aligned_cols=231 Identities=11% Similarity=0.041 Sum_probs=113.6
Q ss_pred ChHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-----CChhhHHHHHHcCcHHHHHHHHhcC------Ch-HHHHHHHHHH
Q 010533 218 GPKLLVNILIDGNEDPEILNSGFAVVAASAT-----GNEVVKESYMELKIDELILEILSRQ------RN-DSIQSLYDAI 285 (508)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~-----~~e~nr~~i~~~G~i~~Lv~lL~~~------~~-~~~~~A~~aL 285 (508)
+...+...|...+.+..++..|+..|.+... -+++.|..|.+ .|+..+.+. .+ .++...+.++
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-----~ll~~l~~~~~~~~~~~~~vr~kla~~l 120 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-----SVMELIANGTLNILEEENHIKDALSRIV 120 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-----HHHHHHHHSSCCTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-----HHHHHHHhhccccccccHHHHHHHHHHH
Confidence 4455555554334577888888877777542 24555555543 344444322 22 3444466666
Q ss_pred HHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC------------hhhHhHHhhc
Q 010533 286 RVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN------------DEICKSVAEN 353 (508)
Q Consensus 286 ~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~------------~e~~~~i~e~ 353 (508)
..+...|-+ +.+ .+.++.|++++.+ ++.....+..+|..|... .+.+..+.+.
T Consensus 121 a~Ia~~d~p--------~~W-----p~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~ 185 (1204)
T 3a6p_A 121 VEMIKREWP--------QHW-----PDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN 185 (1204)
T ss_dssp HHHHHHHST--------TTC-----TTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCc--------ccc-----hHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 666532210 001 1456777777765 333444555555555321 0011112221
Q ss_pred --CCHHHHHHHHhccC---------------CCCcHHHHHHHHHHHHHhhCCchhHHHHHhCC--cHHHHHHHHhccCCC
Q 010533 354 --GGIDALLRCIDDSG---------------LQGNKTVARICCSLLSKLAGSDSNKSAIIENG--GMDKLIVVSARFSDD 414 (508)
Q Consensus 354 --Ggi~~Lv~lL~~~~---------------~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~G--gl~~Lv~lL~~~~~~ 414 (508)
..+..+..+|.++. ...+..++..++.+|.+....-.. ..+.+.. .++.+..++. +
T Consensus 186 ~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~----~ 260 (1204)
T 3a6p_A 186 MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN----E 260 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG----C
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC----C
Confidence 01222333343210 001235777788888776543322 2233332 4555554443 5
Q ss_pred HHHHHHHHHHHHHHhcCC--hhhHHHHHhc---CcHHHHHHHHHcCC------CcHHHHHHHHHHHHHhh
Q 010533 415 ASVLQEVMSIITVLSLRS--PENAARAMEA---GSGDLAIQAMLKFP------NAQQLQRSSCFMIRNLV 473 (508)
Q Consensus 415 ~~v~e~a~~aL~~La~~~--~~~~~~i~~~---G~i~~Lv~~L~~h~------~~~~vq~~A~~aL~nL~ 473 (508)
+.++..|+.+|..++.+. ++....++.. .++..+++.+.... .+..+.+.-|.++..++
T Consensus 261 ~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 261 QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 779999999999998755 3433333321 11334445443111 12455667777777765
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=56.22 E-value=2.6e+02 Score=31.56 Aligned_cols=191 Identities=11% Similarity=0.026 Sum_probs=102.4
Q ss_pred CChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-----ChhhHHHHHHcCcHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 010533 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATG-----NEVVKESYMELKIDELILEILSRQ-----RNDSIQSLYDAIR 286 (508)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~-----~e~nr~~i~~~G~i~~Lv~lL~~~-----~~~~~~~A~~aL~ 286 (508)
++...+..+|.. +.+..++..|+..|.+.... +++.|..|.+ ..+..+...-... ...++...|.++.
T Consensus 48 ~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~-~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia 125 (1049)
T 3m1i_C 48 DAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN-FVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125 (1049)
T ss_dssp TGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH-HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH-HHHHHHHhhCCccccchhhHHHHHHHHHHHH
Confidence 456667777765 35788888888888876432 3455555443 2333332221111 1234444666666
Q ss_pred HhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcC-----hh---------hHhHHhh
Q 010533 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-----DE---------ICKSVAE 352 (508)
Q Consensus 287 ~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~-----~e---------~~~~i~e 352 (508)
.++..+-+ +.+ .+.++.|+++++ .+......+..+|..|+.. .+ .+..+.+
T Consensus 126 ~Ia~~~~p--------~~W-----p~ll~~L~~~~~--~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~ 190 (1049)
T 3m1i_C 126 QILKQEWP--------QNW-----PEFIPELIGSSS--SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK 190 (1049)
T ss_dssp HHHHHHTT--------TTC-----TTHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--------ccc-----hHHHHHHHHHHc--cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 65532100 001 145788888875 2343445555555555421 00 0122222
Q ss_pred c--CCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 353 N--GGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 353 ~--Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
. ..+..+..+|... .+..+...++.++.++...-.. ..+.+...++.+.+.+. .++.++..|+.+|..+..
T Consensus 191 ~~~~i~~~~~~~l~~~---~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l---~~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 191 EFEQIFKLCFQVLEQG---SSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFM---TSPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHH---HSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhC---CCHhHHHHHHHHHHHHHh
Confidence 1 0123344555543 2357899999999887543322 22455566666664332 268899999999999886
Q ss_pred C
Q 010533 431 R 431 (508)
Q Consensus 431 ~ 431 (508)
+
T Consensus 264 ~ 264 (1049)
T 3m1i_C 264 L 264 (1049)
T ss_dssp C
T ss_pred C
Confidence 5
No 116
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=54.38 E-value=59 Score=37.40 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHHHHhhCCc---hhHHHHHhCCcHHHHHHHHhccC-CC--HHHHHHHHHHHHHHhc---CChhhHHHHH
Q 010533 370 GNKTVARICCSLLSKLAGSD---SNKSAIIENGGMDKLIVVSARFS-DD--ASVLQEVMSIITVLSL---RSPENAARAM 440 (508)
Q Consensus 370 ~~~~v~~~al~aL~~La~~~---~~k~~Iv~~Ggl~~Lv~lL~~~~-~~--~~v~e~a~~aL~~La~---~~~~~~~~i~ 440 (508)
.+....+.+|++++.+|+.- ..+..+. ..++.|+.+..... .+ +.+....|+++...+. .+++.-..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-- 566 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-- 566 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--
Confidence 35788999999999998742 2334444 35677777765211 11 2345556677766432 23433222
Q ss_pred hcCcHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCcc
Q 010533 441 EAGSGDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPE 478 (508)
Q Consensus 441 ~~G~i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e 478 (508)
.+..|++.| |..+++||..||.++..++....+
T Consensus 567 ---vl~~L~~~m--~~~~~~vq~aA~~af~~i~~~C~~ 599 (1073)
T 3gjx_A 567 ---VVNKLFEFM--HETHDGVQDMACDTFIKIAQKCRR 599 (1073)
T ss_dssp ---HHHHHHHHT--TCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred ---HHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHH
Confidence 345566666 456789999999999999865443
No 117
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=52.68 E-value=1.5e+02 Score=27.61 Aligned_cols=182 Identities=8% Similarity=0.031 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCChhhH-HHHHHCC-cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCc----chhHH--
Q 010533 142 DLNEMMGLFDKLIELCGGNEGSVNA-AVATKNG-GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ----STETF-- 213 (508)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r-~~i~~~G-avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~----~~~~i-- 213 (508)
+-..-.+++.+|.+++......... ..+..-+ ..+.+-..+.. .+..++..++.++..++.... .+..+
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D---sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD---SNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC---SSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 5667778888888887641000000 0111122 23444455543 356777778888877664221 11111
Q ss_pred HhcCChHHHHH-HHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCC
Q 010533 214 RTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292 (508)
Q Consensus 214 ~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~d 292 (508)
.-...++.|++ .|. .....+...++.++..++..... ... +++.++..+.+.+..++..++..|..+...
T Consensus 99 ~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~-~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~- 169 (278)
T 4ffb_C 99 LISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTS-ITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMAA- 169 (278)
T ss_dssp HHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSS-SHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCc-HHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHHH-
Confidence 11223444443 232 34567777777766555422111 111 234555566665656666555555544311
Q ss_pred cchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q 010533 293 DDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (508)
Q Consensus 293 d~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~ 342 (508)
||...-..+.... ..++.+..+|.+ +|+++...+..++..+..
T Consensus 170 -----fg~~~~~~k~~l~-~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 170 -----FGLTNVNVQTFLP-ELLKHVPQLAGH-GDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp -----HTTTTCCHHHHHH-HHGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred -----hCCCcCCchhHHH-HHHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence 1100000111111 124455666654 578888887777766553
No 118
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=49.97 E-value=15 Score=39.24 Aligned_cols=162 Identities=14% Similarity=0.052 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcC
Q 010533 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (508)
Q Consensus 233 ~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g 312 (508)
..|++.++.+|+.+ ..-+.. ..++..|+..+..+.=++...+.-.|+++ .|.-. .+ .+
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~----------~L--d~ 299 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVE----------DK--DG 299 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCC----------CH--HH
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHH----------HH--HH
Confidence 46777788888777 332221 34455555433332226766677778887 21100 01 25
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhH
Q 010533 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNK 392 (508)
Q Consensus 313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k 392 (508)
.++.++..|.+. |.+++.-++.+|.-++ .++.... .+..++++|.+..|-. .-....+.+|+.|...+..
T Consensus 300 Vv~aVL~GL~D~-DDDVRAVAAetLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLS--ASTgSVMdLLAkL~s~p~~- 369 (800)
T 3oc3_A 300 LCRKLVSLLSSP-DEDIKLLSAELLCHFP-ITDSLDL-----VLEKCWKNIESEELIS--VSKTSNLSLLTKIYRENPE- 369 (800)
T ss_dssp HHHHHHHHTTCS-SHHHHHHHHHHHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCC--TTHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHhhcCCc-ccHHHHHHHHHhhhhc-chhhHHH-----HHHHHHHHhhhhcccc--hhhHHHHHHHHHHHcCCcc-
Confidence 577888888775 6778888899998888 3332332 2467788887653322 2344667778887654421
Q ss_pred HHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 393 SAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 393 ~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
+-....-+|.|...|+ | .-++|+..++.+|..+.
T Consensus 370 -a~~dp~LVPRL~PFLR-H-tITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 370 -LSIPPERLKDIFPCFT-S-PVPEVRTSILNMVKNLS 403 (800)
T ss_dssp -CCCCSGGGGGTGGGGT-C-SSHHHHHHHHHHTTTCC
T ss_pred -cccChHHHHHHHhhhc-C-CcHHHHHHHHHHHHHHH
Confidence 0111245677777776 3 46899999999998876
No 119
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=45.74 E-value=1e+02 Score=35.03 Aligned_cols=100 Identities=13% Similarity=-0.008 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHHHHhhcCh-hh-HhHHhhcCCHHHHHHHHhccCC-CCcHHHHHHHHHHHHHhhCC-chhHHHHHhCCcH
Q 010533 326 SSPSLISASIALKAVAVND-EI-CKSVAENGGIDALLRCIDDSGL-QGNKTVARICCSLLSKLAGS-DSNKSAIIENGGM 401 (508)
Q Consensus 326 d~~~~~~a~~aL~~La~~~-e~-~~~i~e~Ggi~~Lv~lL~~~~~-~~~~~v~~~al~aL~~La~~-~~~k~~Iv~~Ggl 401 (508)
+-..++.++++++.++..- +. ...+.. ..++.|+.+...... .+.+-+...+|.+++.++.. ..+...+- ..+
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl 542 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred CHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHH
Confidence 3456788999999887521 11 111100 012233332211000 01223444688999987632 11222221 345
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 402 DKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
+.|++.|. .+++.|+..||.+|.++|.
T Consensus 543 ~~ll~~l~--~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 543 LKLFEFMH--ETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHTT--SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHH
Confidence 66777775 4579999999999999996
No 120
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=43.97 E-value=89 Score=29.65 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=45.9
Q ss_pred cHHHHHHHHhcccCCCHHHHHHHHHHHHHhhcCCcchhHHHhcCCh---HHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010533 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP---KLLVNILIDGNEDPEILNSGFAVVAAS 246 (508)
Q Consensus 174 avp~Lv~lL~~~~~~~~~~~~~al~aLa~l~~~~~~~~~i~~~ggi---~~Lv~lL~~~~~~~~v~~~a~~~L~~l 246 (508)
.++.++.-+++ .+......|+..+.++.+..... ...++ +.+.++|.. .|..|...|+.++..+
T Consensus 168 v~~~l~~g~ks---KN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 168 MTPMLLDALKS---KNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc---CCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcC--CCHHHHHHHHHHHHHH
Confidence 45666666655 46788888999999887533211 23468 888988873 5889999999888765
No 121
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=43.75 E-value=26 Score=24.09 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=31.7
Q ss_pred chhhhhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 010533 59 KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (508)
Q Consensus 59 ~~~~~isQetfd~~v~eni~~~~m~p~eal~~aI~q~ 95 (508)
.+.-+|+.+.+ +-+.+.....+++.++.+++||.+|
T Consensus 11 ~i~vrl~~el~-~~l~~~a~~~g~s~s~~ir~ai~~~ 46 (55)
T 2k9i_A 11 KLGVYIPQEWH-DRLMEIAKEKNLTLSDVCRLAIKEY 46 (55)
T ss_dssp EEEEEECHHHH-HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eEEEEcCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45567899999 7788888999999999999999997
No 122
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=38.54 E-value=51 Score=37.95 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHhhcC--hh-hHhHHhhcCCHHHHHHHHhccCCCCcH-HHHHHHHHHHHHhhCCc-hhHHHHHhCCcH
Q 010533 327 SPSLISASIALKAVAVN--DE-ICKSVAENGGIDALLRCIDDSGLQGNK-TVARICCSLLSKLAGSD-SNKSAIIENGGM 401 (508)
Q Consensus 327 ~~~~~~a~~aL~~La~~--~e-~~~~i~e~Ggi~~Lv~lL~~~~~~~~~-~v~~~al~aL~~La~~~-~~k~~Iv~~Ggl 401 (508)
-..++.+||+++.++.. ++ ....+.. .++.|+.+........++ .+....|.+++..+..- .+..-+ + -.+
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~--vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~-~vl 568 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVT--VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-K-TVV 568 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-H-HHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHH--HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-H-HHH
Confidence 46789999999999763 22 2233332 367777776542111122 34444667888876321 122211 1 234
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 010533 402 DKLIVVSARFSDDASVLQEVMSIITVLSL 430 (508)
Q Consensus 402 ~~Lv~lL~~~~~~~~v~e~a~~aL~~La~ 430 (508)
..|++.|. .+++.|++.||.++..+|.
T Consensus 569 ~~L~~~m~--~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 569 NKLFEFMH--ETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHTT--CCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHH
Confidence 45556555 5578999999999999985
No 123
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=37.23 E-value=2.3e+02 Score=25.47 Aligned_cols=105 Identities=17% Similarity=0.273 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhcc--CCCCcH--HHHHHHHHHHHHhhCCch
Q 010533 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS--GLQGNK--TVARICCSLLSKLAGSDS 390 (508)
Q Consensus 315 ~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~--~~~~~~--~v~~~al~aL~~La~~~~ 390 (508)
..|.++|+...|-+++.......+. ..-.+.+.++..||+.-|+..-... .+..+. +--+.||.+|+..-...+
T Consensus 69 kyladllktrddmdllnemvvvfrs--ssvsfiktfvsvgglanlmaiykkkieaensntaideerkccevlryvfaeed 146 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFRS--SSVSFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEED 146 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHH--SCHHHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhccchHHHhhhheEEEec--cchhHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHhccc
Confidence 4566778776566666666554432 3345778899999998887654321 122222 223578999999866666
Q ss_pred hHHHHHh-CCcHHHHHHHHhccCCCHHHHHHH
Q 010533 391 NKSAIIE-NGGMDKLIVVSARFSDDASVLQEV 421 (508)
Q Consensus 391 ~k~~Iv~-~Ggl~~Lv~lL~~~~~~~~v~e~a 421 (508)
...++++ .||++.|+.-|+...-.|..|-..
T Consensus 147 atvalieidggvelllkgmnskritpdnqldi 178 (353)
T 4dvg_B 147 ATVALIEIDGGVELLLKGMNSKRITPDNQLDI 178 (353)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCTTSCHHHHHHH
T ss_pred ceEEEEEecccHHHHhcccccCcCCCccccce
Confidence 6666665 578999999998444456555443
No 124
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=36.65 E-value=57 Score=34.87 Aligned_cols=252 Identities=12% Similarity=0.081 Sum_probs=136.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhCCCCChhhHHHHHHCCcHHHHHHHH--hcccC--CC---H
Q 010533 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSIC--YKMRC--GS---K 190 (508)
Q Consensus 118 ~~v~~~l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~i~~~Gavp~Lv~lL--~~~~~--~~---~ 190 (508)
.|.- ..+.|..-+-+. .=+.--.|.-.||++.+.....+-|......+..-.|+.+| ....+ .| .
T Consensus 171 WPfq-fcE~L~~DLFdp-------~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVA 242 (800)
T 3oc3_A 171 NVLD-FFEQISDNLLSY-------EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVA 242 (800)
T ss_dssp SGGG-TTHHHHHHTTCS-------SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBC
T ss_pred CHHH-HHHHHHHHhcCc-------chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeee
Confidence 4433 566677666665 34555667778888776420000000000012233333333 22211 22 2
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHhcCChHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCChhhHHHHHHcCcHHHHHHHH
Q 010533 191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL 270 (508)
Q Consensus 191 ~~~~~al~aLa~l~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~l~~~~e~nr~~i~~~G~i~~Lv~lL 270 (508)
.|+..|.++|+.+ ..-++ + -..+..++..+. ...=+++..++-.|..+ .+-..+ -.++++.++.-|
T Consensus 243 PVRETaAQtLGaL-~hLp~-e----~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIG-P----NDIIEQLVGFLD--SGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSLL 308 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSC-S----CCHHHHHTTGGG--CSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHH-HhCCh-h----HHHHHHHHhhcC--CCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhhc
Confidence 5677777888777 32221 1 233444444333 23456777777777766 111111 235678888888
Q ss_pred hcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcChhhHhH
Q 010533 271 SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-SPSLISASIALKAVAVNDEICKS 349 (508)
Q Consensus 271 ~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d-~~~~~~a~~aL~~La~~~e~~~~ 349 (508)
...+++++..|+.+|..++..+. + ...+..|-+.|.+..| ......+...|+.|...+.. .
T Consensus 309 ~D~DDDVRAVAAetLiPIA~p~~--------------l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a 370 (800)
T 3oc3_A 309 SSPDEDIKLLSAELLCHFPITDS--------------L--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--L 370 (800)
T ss_dssp TCSSHHHHHHHHHHHTTSCCSST--------------H--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--C
T ss_pred CCcccHHHHHHHHHhhhhcchhh--------------H--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--c
Confidence 88888999989999988882221 1 0235666666766543 23345566667776653321 1
Q ss_pred HhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHH-HHhccCCCHHHHHHHHHHH
Q 010533 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIV-VSARFSDDASVLQEVMSII 425 (508)
Q Consensus 350 i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~-lL~~~~~~~~v~e~a~~aL 425 (508)
-.+..-||.|.-+|+.. -..|+..++.+|..+. ....+..+.+ +|- -.++.+++.+..+-
T Consensus 371 ~~dp~LVPRL~PFLRHt----ITSVR~AVL~TL~tfL----------~~~~LRLIFQNILL--E~neeIl~lS~~VW 431 (800)
T 3oc3_A 371 SIPPERLKDIFPCFTSP----VPEVRTSILNMVKNLS----------EESIDFLVAEVVLI--EEKDEIREMAIKLL 431 (800)
T ss_dssp CCCSGGGGGTGGGGTCS----SHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHH--CSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHhhhcCC----cHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHh--CCcHHHHHHHHHHH
Confidence 11224567777788753 2389999999998776 1123444444 332 34677777766655
No 125
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=36.15 E-value=28 Score=32.86 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhhCCch-hHHHHHhCCcHHHHHHHHhc-cC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 010533 372 KTVARICCSLLSKLAGSDS-NKSAIIENGGMDKLIVVSAR-FS-----DDASVLQEVMSIITVLSLRSPENAARAMEAGS 444 (508)
Q Consensus 372 ~~v~~~al~aL~~La~~~~-~k~~Iv~~Ggl~~Lv~lL~~-~~-----~~~~v~e~a~~aL~~La~~~~~~~~~i~~~G~ 444 (508)
...+--+++++.|+-.++. .+..+........+++.+.. .. .+..++-.+...+.|++.-....+. +...
T Consensus 104 ~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~ 180 (253)
T 3gae_A 104 ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLEL 180 (253)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTH
T ss_pred hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHH
Confidence 4677788999999988888 66666543224444544421 11 2456777888888888863211110 1223
Q ss_pred HHHHHHHHHcC-------CCcHHHHHHHHHHHHHhhhcCccch
Q 010533 445 GDLAIQAMLKF-------PNAQQLQRSSCFMIRNLVARNPENS 480 (508)
Q Consensus 445 i~~Lv~~L~~h-------~~~~~vq~~A~~aL~nL~~~~~e~~ 480 (508)
...+++++..- ..+++....+..||.+++...++.+
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~ 223 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLR 223 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGG
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHH
Confidence 45566666531 1245666678889999987655443
No 126
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=29.93 E-value=61 Score=21.10 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHHh
Q 010533 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTLS 96 (508)
Q Consensus 63 ~isQetfd~~v~eni~~~~m~p~eal~~aI~q~~ 96 (508)
.+..+.+ +-+.+-....+++..+.+++||.+|-
T Consensus 8 ~l~~~l~-~~Ld~~a~~~g~srS~~ir~ai~~~l 40 (45)
T 2cpg_A 8 TLSESVL-ENLEKMAREMGLSKSAMISVALENYK 40 (45)
T ss_dssp EEEHHHH-HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ecCHHHH-HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4667777 67777888889999999999999973
No 127
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=28.30 E-value=1.1e+02 Score=28.22 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHH----HHHHHhcC--ChhhHHHHHhcCc
Q 010533 371 NKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMS----IITVLSLR--SPENAARAMEAGS 444 (508)
Q Consensus 371 ~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~----aL~~La~~--~~~~~~~i~~~G~ 444 (508)
+.+++...|..+ +..++. ..+.+...+. +++.-.+..|.. .|+.+-.+ +......+
T Consensus 91 nWd~~D~~~~~l--~~~~~~---------~~~~~~~W~~--s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~----- 152 (235)
T 1t06_A 91 FYMLSDYVVAVT--LSESNI---------AQDVADKWIA--SGDELKMSAGWSCYCWLLGNRKDNAFSESKISDM----- 152 (235)
T ss_dssp SHHHHHHTHHHH--HTTSSS---------HHHHHHHHHH--SCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHH-----
T ss_pred cHHHHHHHHHHH--HhcCch---------HHHHHHHHHc--CcHHHHHHHHHHHHHHHHhhccccCcChhhHHHH-----
Confidence 567777665555 222222 2455666777 788888888887 55552211 11222222
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhhcCccchHHHHhcc
Q 010533 445 GDLAIQAMLKFPNAQQLQRSSCFMIRNLVARNPENSFCSVMVS 487 (508)
Q Consensus 445 i~~Lv~~L~~h~~~~~vq~~A~~aL~nL~~~~~e~~~~~~~~g 487 (508)
.+.+...+ +..+.-||+...|+|+.+..++|+....+++.|
T Consensus 153 l~~i~~~l--~~~~~~v~kAi~W~Lr~~gk~~~~~~~~al~~~ 193 (235)
T 1t06_A 153 LEMVKDTI--HHSPERTKSAMNNFLNTVAISYVPLHEKAVEIA 193 (235)
T ss_dssp HHHHHHHG--GGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHc--cCChHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 22333234 345678999999999999999999999999855
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=24.50 E-value=1.5e+02 Score=24.86 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 010533 357 DALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARFSDDASVLQEVMSIITVLS 429 (508)
Q Consensus 357 ~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a~~aL~~La 429 (508)
..|.+-|.. .++.++-.|+.+|..|..| +.....|.....+..|+.++. ..++.|++.....+...+
T Consensus 45 rai~Krl~~----~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~--~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 45 RSIMRRVNH----KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLN--KGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHTC----SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHH
Confidence 444444543 2457788888888888743 345566666677888888886 357899999988887765
No 129
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=24.27 E-value=4.9e+02 Score=25.15 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHhcC----CCCHHHHHHHHHHHHHhhcCChhhHHHHH-HcCcHHHHHHHHhcCChHHHHHHHHHHHHhcCCCcchh
Q 010533 222 LVNILIDG----NEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQV 296 (508)
Q Consensus 222 Lv~lL~~~----~~~~~v~~~a~~~L~~l~~~~e~nr~~i~-~~G~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~ 296 (508)
+.++|.++ ..+.+....++..|-.++.+.+-.-+.+- +...+..|+ ........+.+-+++.|.+...++
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN---- 101 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN---- 101 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC----
Q ss_pred hhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCHHHHHHHHhccCCCCcHHHHH
Q 010533 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVAR 376 (508)
Q Consensus 297 ~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~ 376 (508)
|+.++.+.. ..+..+...|..|..+. .........+++
T Consensus 102 ------------------P~Al~~V~~-~~p~fv~~lf~~L~~~~-----------------------~~~~~~~~~l~K 139 (315)
T 3qml_C 102 ------------------PPVVEFINE-SFPNFKSKIMAALSNLN-----------------------DSNHRSSNILIK 139 (315)
T ss_dssp ------------------HHHHHHHHH-HCTTHHHHHHHHHHHHH-----------------------CC--CCCHHHHH
T ss_pred ------------------HHHHHHHHH-hChhHHHHHHHHHHHHh-----------------------hcccchhHHHHH
Q ss_pred HHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCC--CHHHHHHHHHHHHHH
Q 010533 377 ICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSD--DASVLQEVMSIITVL 428 (508)
Q Consensus 377 ~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~--~~~v~e~a~~aL~~L 428 (508)
.-+++|..|..++ ..+ ...|+..|++++. .. ++.+|..+.-.+..+
T Consensus 140 R~LsII~~L~~~~---~~F-~~~~m~~L~~ly~--~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 140 RYLSILNELPVTS---EDL-PIYSTVVLQNVYE--RNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHSCCCS---TTC---CCHHHHHHHHH--HTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCh---Hhh-hhccHHHHHHHHc--cCCCCHHHHHHHHHHHHHH
No 130
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=21.27 E-value=5e+02 Score=24.09 Aligned_cols=137 Identities=10% Similarity=-0.019 Sum_probs=77.3
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcCCChhHHHHHHHHHHHhhc--Chh
Q 010533 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--NDE 345 (508)
Q Consensus 268 ~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~--~~e 345 (508)
.+.+...+++.-.|+.+|..+ ..+. ..++.+...+.....=.+..-++.++..++. .++
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~~~~------------------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-SKDK------------------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-TTSH------------------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhCcchHHHHHHHHHHHhc-cCcH------------------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 344444456776777777665 2110 1234444323333333566777777776663 332
Q ss_pred hHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhcc--CCCHHHHHHHHH
Q 010533 346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARF--SDDASVLQEVMS 423 (508)
Q Consensus 346 ~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~--~~~~~v~e~a~~ 423 (508)
. .++.+.....+. +..|.+.|...++.-+..+.- ..-...++.++... .++.-|++...+
T Consensus 139 ~--------~l~~~~~W~~d~----n~~VRR~Ase~~rpW~~~~~~------k~dp~~ll~iL~~L~~D~s~yVrKSVan 200 (240)
T 3l9t_A 139 K--------ALPIIDEWLKSS----NLHTRRAATEGLRIWTNRPYF------KENPNEAIRRIADLKEDVSEYVRKSVGN 200 (240)
T ss_dssp T--------THHHHHHHHHCS----SHHHHHHHHHHTCSGGGSTTT------TTCHHHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred H--------HHHHHHHHhcCC----CHHHHHHHHHhhHHHhccchh------hcCHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 1 456666666652 458888887776542221111 11223333444322 345779999999
Q ss_pred HHHHHhcCChhhHHHHHh
Q 010533 424 IITVLSLRSPENAARAME 441 (508)
Q Consensus 424 aL~~La~~~~~~~~~i~~ 441 (508)
.|..++..+|+-...+++
T Consensus 201 ~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 201 ALRDISKKFPDLVKIELK 218 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhCHHHHHHHHH
Confidence 999999999986665554
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=20.97 E-value=2.5e+02 Score=23.90 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=50.8
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHhhC--CchhHHHHHhCCcHHHHHHHHhcc----CCCHHHHHHHHHHHHHHh
Q 010533 356 IDALLRCIDDSGLQGNKTVARICCSLLSKLAG--SDSNKSAIIENGGMDKLIVVSARF----SDDASVLQEVMSIITVLS 429 (508)
Q Consensus 356 i~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~--~~~~k~~Iv~~Ggl~~Lv~lL~~~----~~~~~v~e~a~~aL~~La 429 (508)
+..|.+-|.. .++.++-.|+.+|-.|.. .+.....|.....+..|+.++... ..++.|++..+..|..-+
T Consensus 50 ~ral~krl~~----~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 50 TRLLAHKIQS----PQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHTC----SSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3444444542 356889999999999874 345667787888888999998631 246889999988888765
Q ss_pred c
Q 010533 430 L 430 (508)
Q Consensus 430 ~ 430 (508)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 132
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=20.97 E-value=1.3e+02 Score=22.85 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHhhcCCChhHHHHHHHHHH-hhccccCC
Q 010533 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLS 103 (508)
Q Consensus 63 ~isQetfd~~v~eni~~~~m~p~eal~~aI~q~-~~qgvdLs 103 (508)
+|..+.- +-..+-++++||++.+|++-...|. ..+|++++
T Consensus 7 RiD~~lK-~~a~~v~~~lGl~~s~Ai~~fl~~v~~~~~iPF~ 47 (79)
T 4fxe_A 7 RIDDELK-ARSYAALEKMGVTPSEALRLMLEYIADNERLPFK 47 (79)
T ss_dssp ECCHHHH-HHHHHHHHHHTCCHHHHHHHHHHHHHHHSSCSSC
T ss_pred EcCHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCc
Confidence 3444444 3445678999999999999999997 78998774
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.52 E-value=2.8e+02 Score=23.92 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred hhHhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhh--CCchhHHHHHhCCcHHHHHHHHhccCCCHHHHHHH
Q 010533 345 EICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLA--GSDSNKSAIIENGGMDKLIVVSARFSDDASVLQEV 421 (508)
Q Consensus 345 e~~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La--~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~e~a 421 (508)
+.|..|- +..|....+++|...-.+.++.++-.|+.+|-.|. ..+.....|.....+..|+.++. ...++.|++.+
T Consensus 38 eicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~-~~~~~~Vk~ki 116 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK-NKAHPKVCEKL 116 (163)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc-cCCCHHHHHHH
Q ss_pred HHHHHHHh
Q 010533 422 MSIITVLS 429 (508)
Q Consensus 422 ~~aL~~La 429 (508)
+..|..-+
T Consensus 117 l~li~~W~ 124 (163)
T 1x5b_A 117 KSLMVEWS 124 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 134
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.15 E-value=1.7e+02 Score=25.64 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHhHHh-hcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCC--chhHHHHHhCCcHHHHHHHHhcc----CCCHHH
Q 010533 345 EICKSVA-ENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGS--DSNKSAIIENGGMDKLIVVSARF----SDDASV 417 (508)
Q Consensus 345 e~~~~i~-e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~--~~~k~~Iv~~Ggl~~Lv~lL~~~----~~~~~v 417 (508)
+.|..|- +..|-...+++|...-.+.++.++-.|+.+|-.|..| +.....|.+...+..|+.++... ..++.|
T Consensus 36 eicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~V 115 (171)
T 1juq_A 36 GFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKV 115 (171)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHH
Q ss_pred HHHHHHHHHHHh
Q 010533 418 LQEVMSIITVLS 429 (508)
Q Consensus 418 ~e~a~~aL~~La 429 (508)
++.++..|..-+
T Consensus 116 k~kil~li~~W~ 127 (171)
T 1juq_A 116 KTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 135
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=20.15 E-value=9.7e+02 Score=27.07 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=76.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCCcchhhhhhcchHHHHHHhcCCHHHHHHHHhcC----C--ChhHHHHHHHHHHH
Q 010533 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG----L--SSPSLISASIALKA 339 (508)
Q Consensus 266 Lv~lL~~~~~~~~~~A~~aL~~L~~~dd~r~~~~~a~~~~~~i~~~g~i~~Lv~lL~~~----~--d~~~~~~a~~aL~~ 339 (508)
|.+.+.+.+.+....+..+|.|+-.. ..++.|..+|... . ...+...|.++|.+
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~p--------------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~ 504 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQP--------------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRN 504 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCG--------------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTT
T ss_pred HHHHHhcCChHHHHHHHHHhhccCCh--------------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHH
Confidence 34444444434445566677776421 2466676666532 1 13566789999988
Q ss_pred hhcCh-hhHhHHhhcCCHHHHHHHHhccCCCCcHHHHHHHHHHHHHhhCCchhHHHHHhCCcHHHHHHHHhccCCCHHHH
Q 010533 340 VAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKLAGSDSNKSAIIENGGMDKLIVVSARFSDDASVL 418 (508)
Q Consensus 340 La~~~-e~~~~i~e~Ggi~~Lv~lL~~~~~~~~~~v~~~al~aL~~La~~~~~k~~Iv~~Ggl~~Lv~lL~~~~~~~~v~ 418 (508)
++... +.. -+.++.+..+..+ +.+++-.|+.+|-. .+|... -+..|...|. +-.+..|.
T Consensus 505 ~~~~~p~~v--------~~il~~i~~n~~e--~~EvRiaA~~~Lm~--t~P~~~-------~l~~ia~~l~-~E~~~QV~ 564 (1056)
T 1lsh_A 505 IAKRDPRKV--------QEIVLPIFLNVAI--KSELRIRSCIVFFE--SKPSVA-------LVSMVAVRLR-REPNLQVA 564 (1056)
T ss_dssp GGGTCHHHH--------HHHHHHHHHCTTS--CHHHHHHHHHHHHH--TCCCHH-------HHHHHHHHHT-TCSCHHHH
T ss_pred hhhhchHHH--------HHHHHHHhcCCCC--ChHHHHHHHHHHHH--HCcCHH-------HHHHHHHHHh-hCchHHHH
Confidence 88532 212 2567778765433 45888888877743 333322 2456666675 33578888
Q ss_pred HHHHHHHHHHhcCC
Q 010533 419 QEVMSIITVLSLRS 432 (508)
Q Consensus 419 e~a~~aL~~La~~~ 432 (508)
-.....|.+|+..+
T Consensus 565 sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 565 SFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcC
Confidence 88899999988533
No 136
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=20.07 E-value=5.4e+02 Score=24.09 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=41.3
Q ss_pred CHHHHHHHHhcCCChhHHHHHHHHHHHhhcChhhHhHHhhcCCH---HHHHHHHhccCCCCcHHHHHHHHHHHHHhh
Q 010533 313 IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI---DALLRCIDDSGLQGNKTVARICCSLLSKLA 386 (508)
Q Consensus 313 ~i~~Lv~lL~~~~d~~~~~~a~~aL~~La~~~e~~~~i~e~Ggi---~~Lv~lL~~~~~~~~~~v~~~al~aL~~La 386 (508)
..+.+++-+++ .+.......+..+..+-.....- -..++ +.+..++.+. |..|...|+.++..+-
T Consensus 168 v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~----d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDK----DVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCS----SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCC----CHHHHHHHHHHHHHHH
Confidence 45666676654 45666666666666654322211 13467 8888888763 4589999999888763
Done!