Query 010534
Match_columns 508
No_of_seqs 445 out of 3300
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 01:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953 Mitochondrial RNA heli 100.0 3.8E-81 8.3E-86 610.0 37.0 447 58-504 172-624 (700)
2 KOG0922 DEAH-box RNA helicase 100.0 3E-46 6.4E-51 375.6 16.8 378 76-479 65-497 (674)
3 KOG0923 mRNA splicing factor A 100.0 6.8E-45 1.5E-49 361.8 16.7 379 76-480 279-714 (902)
4 KOG0924 mRNA splicing factor A 100.0 3.3E-44 7.2E-49 357.4 18.9 381 76-482 370-807 (1042)
5 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.1E-42 2.3E-47 376.0 22.8 386 76-481 16-444 (819)
6 COG1643 HrpA HrpA-like helicas 100.0 1.9E-42 4E-47 368.3 16.5 380 76-482 64-497 (845)
7 KOG0330 ATP-dependent RNA heli 100.0 6E-42 1.3E-46 322.6 17.5 297 40-358 67-406 (476)
8 PRK11664 ATP-dependent RNA hel 100.0 2.1E-41 4.6E-46 366.8 24.3 368 76-464 19-430 (812)
9 KOG0331 ATP-dependent RNA heli 100.0 8.5E-41 1.8E-45 335.0 21.9 298 40-359 97-448 (519)
10 PRK02362 ski2-like helicase; P 100.0 1E-39 2.2E-44 356.8 28.4 325 41-375 8-416 (737)
11 PRK04837 ATP-dependent RNA hel 100.0 1.1E-39 2.3E-44 336.2 25.0 296 40-359 14-362 (423)
12 PRK01172 ski2-like helicase; P 100.0 5.2E-39 1.1E-43 348.8 30.3 324 41-375 8-396 (674)
13 KOG0925 mRNA splicing factor A 100.0 3.1E-41 6.8E-46 325.3 10.4 402 75-507 60-525 (699)
14 PRK11776 ATP-dependent RNA hel 100.0 3E-39 6.5E-44 336.4 24.3 297 41-359 11-349 (460)
15 PRK10590 ATP-dependent RNA hel 100.0 7.3E-39 1.6E-43 332.2 26.9 298 40-359 7-352 (456)
16 PTZ00110 helicase; Provisional 100.0 8.3E-39 1.8E-43 336.8 26.6 298 40-359 136-484 (545)
17 PRK11131 ATP-dependent RNA hel 100.0 3.4E-39 7.4E-44 355.0 23.1 378 76-479 88-522 (1294)
18 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-38 3E-43 334.1 25.8 296 40-359 127-475 (518)
19 PRK04537 ATP-dependent RNA hel 100.0 8.5E-39 1.8E-43 337.8 23.9 295 41-359 16-364 (572)
20 COG0513 SrmB Superfamily II DN 100.0 1.4E-38 3E-43 332.0 25.0 294 41-358 36-379 (513)
21 TIGR00614 recQ_fam ATP-depende 100.0 3.9E-38 8.4E-43 327.8 26.8 298 55-371 5-346 (470)
22 PRK11192 ATP-dependent RNA hel 100.0 4.1E-38 8.8E-43 325.9 26.8 297 40-358 7-351 (434)
23 PRK11634 ATP-dependent RNA hel 100.0 3.5E-38 7.5E-43 335.0 26.1 298 40-359 12-352 (629)
24 KOG0345 ATP-dependent RNA heli 100.0 7.1E-39 1.5E-43 308.5 18.4 314 40-376 12-382 (567)
25 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6E-39 1.3E-43 354.3 20.2 379 76-479 81-513 (1283)
26 PRK01297 ATP-dependent RNA hel 100.0 5.9E-38 1.3E-42 327.6 26.2 298 40-359 93-442 (475)
27 PLN03137 ATP-dependent DNA hel 100.0 2.3E-37 5E-42 333.1 27.0 305 41-368 444-797 (1195)
28 COG1204 Superfamily II helicas 100.0 1.2E-37 2.5E-42 333.6 22.5 325 40-373 15-425 (766)
29 KOG0343 RNA Helicase [RNA proc 100.0 4.1E-38 8.8E-43 308.0 17.3 333 41-394 76-463 (758)
30 PRK00254 ski2-like helicase; P 100.0 5.6E-37 1.2E-41 334.4 26.9 323 41-374 8-405 (720)
31 PRK11057 ATP-dependent DNA hel 100.0 1.3E-36 2.9E-41 324.4 29.0 307 43-372 11-357 (607)
32 PTZ00424 helicase 45; Provisio 100.0 6.1E-37 1.3E-41 314.6 25.4 296 41-359 35-374 (401)
33 KOG0333 U5 snRNP-like RNA heli 100.0 2.1E-37 4.6E-42 301.6 20.1 298 40-359 251-624 (673)
34 TIGR03817 DECH_helic helicase/ 100.0 2.1E-37 4.5E-42 335.3 22.3 296 40-358 20-385 (742)
35 KOG0338 ATP-dependent RNA heli 100.0 2E-37 4.3E-42 300.7 16.3 306 40-369 187-544 (691)
36 KOG0342 ATP-dependent RNA heli 100.0 5.3E-37 1.1E-41 297.6 19.2 304 40-367 88-446 (543)
37 KOG0340 ATP-dependent RNA heli 100.0 1.7E-36 3.6E-41 282.7 21.7 314 40-375 13-381 (442)
38 PRK13767 ATP-dependent helicas 100.0 3.5E-36 7.7E-41 331.9 28.2 373 37-433 14-475 (876)
39 TIGR01389 recQ ATP-dependent D 100.0 1.2E-35 2.7E-40 317.8 27.1 296 57-371 9-344 (591)
40 KOG0348 ATP-dependent RNA heli 100.0 1E-35 2.3E-40 290.3 23.9 313 40-372 142-567 (708)
41 KOG0926 DEAH-box RNA helicase 100.0 1.1E-37 2.4E-42 315.6 9.4 369 59-451 242-786 (1172)
42 KOG0328 Predicted ATP-dependen 100.0 3.8E-36 8.1E-41 272.1 17.3 298 40-359 33-373 (400)
43 COG1201 Lhr Lhr-like helicases 100.0 2.9E-35 6.4E-40 311.0 26.1 371 37-432 4-438 (814)
44 PHA02653 RNA helicase NPH-II; 100.0 6.5E-36 1.4E-40 316.1 20.7 332 65-431 168-570 (675)
45 KOG0332 ATP-dependent RNA heli 100.0 3.4E-35 7.3E-40 275.5 21.9 332 22-373 82-462 (477)
46 COG0514 RecQ Superfamily II DN 100.0 6.7E-35 1.4E-39 298.0 25.5 297 57-372 13-351 (590)
47 KOG0335 ATP-dependent RNA heli 100.0 3.4E-35 7.3E-40 289.8 21.1 299 39-359 79-444 (482)
48 COG1202 Superfamily II helicas 100.0 1E-34 2.2E-39 285.6 17.6 305 40-359 200-553 (830)
49 KOG0326 ATP-dependent RNA heli 100.0 4.5E-35 9.8E-40 269.3 13.5 312 41-374 92-448 (459)
50 KOG0952 DNA/RNA helicase MER3/ 100.0 4.9E-34 1.1E-38 297.6 22.0 311 57-372 106-505 (1230)
51 KOG0336 ATP-dependent RNA heli 100.0 1.2E-33 2.6E-38 267.6 20.2 294 41-356 227-569 (629)
52 KOG0347 RNA helicase [RNA proc 100.0 1.8E-33 3.8E-38 275.6 16.6 307 35-366 183-578 (731)
53 KOG0339 ATP-dependent RNA heli 100.0 2.1E-32 4.5E-37 265.6 22.6 298 41-360 230-576 (731)
54 PRK09751 putative ATP-dependen 100.0 6.3E-32 1.4E-36 302.8 27.1 335 82-432 1-461 (1490)
55 KOG0920 ATP-dependent RNA heli 100.0 3.8E-32 8.3E-37 288.2 23.6 397 68-486 181-661 (924)
56 TIGR00580 mfd transcription-re 100.0 9.8E-32 2.1E-36 293.8 25.9 283 57-359 448-770 (926)
57 KOG0346 RNA helicase [RNA proc 100.0 6.9E-32 1.5E-36 258.1 19.0 296 40-359 25-410 (569)
58 KOG0948 Nuclear exosomal RNA h 100.0 1.4E-32 3E-37 277.4 13.3 309 61-376 129-558 (1041)
59 PRK10689 transcription-repair 100.0 4.8E-31 1E-35 294.3 25.7 283 57-358 597-918 (1147)
60 PRK10917 ATP-dependent DNA hel 100.0 1E-30 2.3E-35 282.1 27.3 279 58-357 259-587 (681)
61 KOG0341 DEAD-box protein abstr 100.0 2.4E-32 5.1E-37 257.2 12.2 294 41-359 177-528 (610)
62 COG4581 Superfamily II RNA hel 100.0 3.9E-31 8.5E-36 283.5 22.4 323 61-391 119-571 (1041)
63 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-32 4.5E-37 265.5 10.4 296 58-369 156-551 (620)
64 TIGR00643 recG ATP-dependent D 100.0 2.4E-30 5.1E-35 277.6 25.7 287 45-357 225-564 (630)
65 TIGR01587 cas3_core CRISPR-ass 100.0 1.5E-30 3.3E-35 263.0 21.3 267 79-359 1-336 (358)
66 KOG0951 RNA helicase BRR2, DEA 100.0 6.9E-31 1.5E-35 277.3 18.8 324 37-372 292-716 (1674)
67 KOG0947 Cytoplasmic exosomal R 100.0 3.7E-31 8.1E-36 273.2 15.1 307 62-375 298-742 (1248)
68 KOG0334 RNA helicase [RNA proc 100.0 6.8E-30 1.5E-34 269.1 19.1 295 40-358 371-719 (997)
69 PHA02558 uvsW UvsW helicase; P 100.0 7.8E-29 1.7E-33 259.4 23.7 279 60-358 113-454 (501)
70 KOG0344 ATP-dependent RNA heli 100.0 6.3E-29 1.4E-33 247.0 18.6 297 41-359 143-495 (593)
71 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-28 3.3E-33 240.7 19.0 283 58-359 12-481 (542)
72 KOG0327 Translation initiation 100.0 2.1E-28 4.5E-33 232.0 18.5 310 40-374 32-389 (397)
73 KOG4284 DEAD box protein [Tran 100.0 1.6E-29 3.5E-34 251.6 11.2 296 41-358 32-378 (980)
74 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.9E-28 1.1E-32 257.8 21.9 268 58-346 13-380 (844)
75 KOG0352 ATP-dependent DNA heli 100.0 1.4E-28 3E-33 234.6 14.3 294 44-359 6-362 (641)
76 KOG0351 ATP-dependent DNA heli 100.0 1.8E-27 3.9E-32 257.1 18.5 295 57-370 260-604 (941)
77 KOG0337 ATP-dependent RNA heli 100.0 1.3E-27 2.8E-32 228.0 15.1 296 40-357 27-366 (529)
78 TIGR03158 cas3_cyano CRISPR-as 99.9 3.9E-26 8.5E-31 228.9 20.9 256 66-341 2-357 (357)
79 KOG0353 ATP-dependent DNA heli 99.9 3.9E-26 8.5E-31 214.9 15.0 315 13-357 57-465 (695)
80 TIGR00603 rad25 DNA repair hel 99.9 4.3E-25 9.3E-30 233.1 22.9 275 60-359 254-607 (732)
81 COG1205 Distinct helicase fami 99.9 1.4E-25 3E-30 244.2 18.6 292 43-356 57-419 (851)
82 PRK14701 reverse gyrase; Provi 99.9 2.5E-25 5.4E-30 254.3 19.6 277 57-346 76-446 (1638)
83 PRK09401 reverse gyrase; Revie 99.9 2.8E-25 6.1E-30 248.8 17.2 268 57-341 77-429 (1176)
84 PRK13766 Hef nuclease; Provisi 99.9 1.4E-24 3E-29 240.4 22.1 105 238-358 364-478 (773)
85 KOG0354 DEAD-box like helicase 99.9 1.5E-24 3.3E-29 224.6 20.4 101 242-358 416-528 (746)
86 COG1200 RecG RecG-like helicas 99.9 5.3E-24 1.1E-28 217.6 20.8 279 61-360 262-592 (677)
87 KOG0950 DNA polymerase theta/e 99.9 5.3E-24 1.2E-28 222.2 18.2 310 58-375 220-628 (1008)
88 PRK05580 primosome assembly pr 99.9 2.3E-23 4.9E-28 224.3 23.1 288 60-354 143-544 (679)
89 PRK09200 preprotein translocas 99.9 3.5E-23 7.7E-28 220.7 23.4 104 239-359 428-541 (790)
90 PRK12898 secA preprotein trans 99.9 3.5E-23 7.6E-28 216.3 22.0 109 240-365 474-592 (656)
91 TIGR00595 priA primosomal prot 99.9 3.2E-23 6.9E-28 215.5 19.9 266 81-353 1-375 (505)
92 COG1197 Mfd Transcription-repa 99.9 4.2E-23 9.1E-28 222.1 20.1 316 22-359 539-913 (1139)
93 TIGR03714 secA2 accessory Sec 99.9 1.2E-22 2.7E-27 214.6 22.5 103 239-359 424-537 (762)
94 TIGR01054 rgy reverse gyrase. 99.9 5.1E-23 1.1E-27 231.1 19.2 251 58-320 75-410 (1171)
95 PRK09694 helicase Cas3; Provis 99.9 2.1E-22 4.5E-27 218.6 21.6 271 59-345 284-664 (878)
96 COG1061 SSL2 DNA or RNA helica 99.9 3.7E-22 8E-27 205.2 21.6 266 59-345 34-378 (442)
97 COG4098 comFA Superfamily II D 99.9 6.4E-22 1.4E-26 184.9 18.7 286 60-359 96-416 (441)
98 TIGR00963 secA preprotein tran 99.9 1.6E-21 3.5E-26 204.9 24.0 103 239-358 405-516 (745)
99 PRK04914 ATP-dependent helicas 99.9 1.9E-21 4.1E-26 212.5 24.6 111 239-359 493-605 (956)
100 KOG0349 Putative DEAD-box RNA 99.9 4.6E-22 9.9E-27 190.4 11.2 109 235-357 501-613 (725)
101 KOG0949 Predicted helicase, DE 99.8 1.7E-20 3.8E-25 195.1 16.1 105 265-380 964-1068(1330)
102 PRK11448 hsdR type I restricti 99.8 1.1E-19 2.4E-24 203.0 22.2 281 60-355 412-814 (1123)
103 KOG0329 ATP-dependent RNA heli 99.8 3E-21 6.4E-26 173.2 5.3 276 41-359 49-355 (387)
104 COG1203 CRISPR-associated heli 99.8 1.8E-19 3.8E-24 196.1 18.2 283 63-359 197-550 (733)
105 COG1198 PriA Primosomal protei 99.8 1.3E-17 2.7E-22 176.4 19.5 304 60-369 197-614 (730)
106 PRK13104 secA preprotein trans 99.8 1.4E-17 3E-22 177.8 19.5 93 240-346 445-577 (896)
107 PRK12906 secA preprotein trans 99.8 2.9E-17 6.2E-22 174.5 20.7 101 239-356 440-550 (796)
108 PRK12904 preprotein translocas 99.8 4.2E-17 9.2E-22 174.0 20.0 93 240-346 431-563 (830)
109 PLN03142 Probable chromatin-re 99.7 5.2E-17 1.1E-21 178.5 17.9 285 61-359 169-599 (1033)
110 PRK13107 preprotein translocas 99.7 3.1E-15 6.8E-20 159.5 22.0 92 241-346 451-581 (908)
111 KOG0921 Dosage compensation co 99.7 2.5E-16 5.3E-21 163.1 11.9 358 76-450 392-856 (1282)
112 cd00268 DEADc DEAD-box helicas 99.7 4.6E-16 1E-20 144.3 12.1 159 41-206 6-192 (203)
113 PRK12899 secA preprotein trans 99.6 1.3E-14 2.7E-19 155.2 22.1 111 58-170 86-228 (970)
114 PF00271 Helicase_C: Helicase 99.6 6.7E-16 1.4E-20 119.7 8.5 76 257-344 2-78 (78)
115 COG0556 UvrB Helicase subunit 99.6 2.3E-14 4.9E-19 142.0 20.8 113 246-369 454-567 (663)
116 KOG0951 RNA helicase BRR2, DEA 99.6 5E-15 1.1E-19 158.4 16.5 302 59-373 1141-1509(1674)
117 TIGR00348 hsdR type I site-spe 99.6 2.1E-14 4.5E-19 155.1 21.3 264 77-357 263-649 (667)
118 COG1110 Reverse gyrase [DNA re 99.6 1.2E-14 2.7E-19 153.5 17.3 247 60-319 81-417 (1187)
119 COG4096 HsdR Type I site-speci 99.6 2.6E-14 5.6E-19 149.0 15.9 275 59-346 163-528 (875)
120 KOG0385 Chromatin remodeling c 99.6 3.3E-13 7.1E-18 138.6 22.1 285 61-359 167-599 (971)
121 PF00270 DEAD: DEAD/DEAH box h 99.6 8.1E-15 1.8E-19 131.6 8.5 135 63-199 1-162 (169)
122 KOG1123 RNA polymerase II tran 99.6 3.1E-14 6.6E-19 139.5 12.8 284 58-359 299-653 (776)
123 cd00079 HELICc Helicase superf 99.5 4.7E-14 1E-18 120.7 11.4 101 239-354 28-130 (131)
124 smart00490 HELICc helicase sup 99.5 1E-13 2.2E-18 108.1 8.6 80 253-344 2-82 (82)
125 TIGR00631 uvrb excinuclease AB 99.4 5.3E-13 1.1E-17 142.7 12.8 114 241-365 444-559 (655)
126 PRK05298 excinuclease ABC subu 99.4 1.4E-12 3.1E-17 140.4 13.7 107 241-358 448-556 (652)
127 TIGR01407 dinG_rel DnaQ family 99.4 2.8E-11 6.1E-16 134.9 24.4 116 238-358 673-814 (850)
128 KOG0384 Chromodomain-helicase 99.4 5E-12 1.1E-16 136.0 15.9 111 238-359 697-811 (1373)
129 KOG0387 Transcription-coupled 99.4 4.9E-11 1.1E-15 123.4 21.2 112 238-359 544-658 (923)
130 PRK12326 preprotein translocas 99.4 7.8E-11 1.7E-15 123.5 21.9 94 75-170 91-211 (764)
131 PRK14873 primosome assembly pr 99.3 3.4E-11 7.3E-16 128.6 18.1 92 81-172 164-272 (665)
132 COG4889 Predicted helicase [Ge 99.3 7.8E-12 1.7E-16 130.0 12.6 81 265-354 499-583 (1518)
133 KOG4150 Predicted ATP-dependen 99.3 3.1E-12 6.7E-17 127.3 6.3 273 60-346 285-630 (1034)
134 smart00487 DEXDc DEAD-like hel 99.3 2.2E-11 4.7E-16 111.6 11.7 150 57-208 4-180 (201)
135 KOG1000 Chromatin remodeling p 99.3 1E-10 2.2E-15 115.1 16.5 130 240-379 493-625 (689)
136 KOG0390 DNA repair protein, SN 99.3 1E-10 2.2E-15 123.9 17.7 103 247-359 603-707 (776)
137 PRK13103 secA preprotein trans 99.3 2.8E-10 6E-15 122.3 20.4 93 78-170 96-215 (913)
138 KOG0389 SNF2 family DNA-depend 99.3 1.8E-09 3.8E-14 112.1 24.0 111 238-359 775-888 (941)
139 cd00046 DEXDc DEAD-like helica 99.2 3.2E-11 7E-16 103.9 9.5 95 78-172 1-118 (144)
140 PF02399 Herpes_ori_bp: Origin 99.2 5.4E-10 1.2E-14 118.2 17.9 257 75-345 47-378 (824)
141 PRK12900 secA preprotein trans 99.2 3.5E-10 7.5E-15 122.0 15.4 104 239-359 598-711 (1025)
142 KOG0392 SNF2 family DNA-depend 99.1 8.8E-10 1.9E-14 118.8 16.2 109 240-359 1341-1454(1549)
143 TIGR02562 cas3_yersinia CRISPR 99.1 1.3E-09 2.8E-14 118.2 17.4 93 243-346 761-882 (1110)
144 PRK07246 bifunctional ATP-depe 99.1 2.5E-09 5.5E-14 117.9 18.0 113 238-359 646-784 (820)
145 PRK12903 secA preprotein trans 99.0 9.6E-09 2.1E-13 109.6 18.1 91 241-346 428-529 (925)
146 PF04851 ResIII: Type III rest 99.0 2.9E-10 6.3E-15 103.2 5.5 110 62-171 4-160 (184)
147 CHL00122 secA preprotein trans 99.0 5.6E-08 1.2E-12 104.3 20.9 94 77-170 89-209 (870)
148 KOG1002 Nucleotide excision re 98.9 2.1E-08 4.5E-13 99.0 14.5 86 264-359 663-749 (791)
149 PF07652 Flavi_DEAD: Flaviviru 98.9 3.1E-09 6.6E-14 89.7 5.6 94 76-170 3-108 (148)
150 KOG0391 SNF2 family DNA-depend 98.8 1.9E-07 4.2E-12 100.4 16.1 98 251-359 1289-1387(1958)
151 PRK12902 secA preprotein trans 98.7 9.8E-07 2.1E-11 94.9 21.0 93 78-170 99-218 (939)
152 KOG0386 Chromatin remodeling c 98.7 7.8E-08 1.7E-12 102.5 9.4 83 265-357 752-836 (1157)
153 KOG4439 RNA polymerase II tran 98.5 1.2E-06 2.6E-11 90.3 12.6 94 255-359 763-858 (901)
154 PRK12901 secA preprotein trans 98.5 9.1E-06 2E-10 88.6 19.5 86 247-346 637-731 (1112)
155 COG0610 Type I site-specific r 98.5 1.2E-06 2.6E-11 98.3 13.3 70 279-357 581-651 (962)
156 PF00176 SNF2_N: SNF2 family N 98.5 8.3E-07 1.8E-11 87.2 10.8 114 75-191 23-166 (299)
157 KOG0388 SNF2 family DNA-depend 98.5 4.5E-06 9.7E-11 86.2 16.0 107 241-359 1046-1154(1185)
158 KOG0952 DNA/RNA helicase MER3/ 98.3 2.8E-07 6E-12 98.9 1.5 151 60-211 926-1105(1230)
159 PF13086 AAA_11: AAA domain; P 98.2 8.3E-06 1.8E-10 76.8 9.4 60 62-123 2-75 (236)
160 KOG1015 Transcription regulato 98.1 4.9E-05 1.1E-09 81.1 14.8 84 265-358 1190-1276(1567)
161 KOG1802 RNA helicase nonsense 98.1 2.8E-05 6E-10 80.1 11.9 75 55-131 404-484 (935)
162 PF13604 AAA_30: AAA domain; P 98.1 8.8E-06 1.9E-10 74.6 7.4 124 62-198 2-132 (196)
163 KOG1803 DNA helicase [Replicat 98.0 1.4E-05 3E-10 81.9 7.8 62 60-122 184-250 (649)
164 TIGR00376 DNA helicase, putati 97.8 9.5E-05 2.1E-09 79.8 10.9 67 60-127 156-227 (637)
165 KOG1016 Predicted DNA helicase 97.8 0.00085 1.8E-08 70.5 16.4 83 267-359 765-849 (1387)
166 PF13245 AAA_19: Part of AAA d 97.8 7.4E-05 1.6E-09 56.9 6.6 46 76-121 9-62 (76)
167 PF09848 DUF2075: Uncharacteri 97.7 4.2E-05 9.1E-10 77.0 5.1 82 78-171 2-97 (352)
168 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.0001 2.3E-09 78.5 6.8 47 76-122 15-67 (636)
169 PF13307 Helicase_C_2: Helicas 97.6 0.0002 4.3E-09 63.9 6.9 118 235-358 5-150 (167)
170 PF02562 PhoH: PhoH-like prote 97.6 0.00019 4.1E-09 65.6 6.8 50 61-112 4-60 (205)
171 COG0653 SecA Preprotein transl 97.3 0.0071 1.5E-07 65.6 15.6 94 77-170 93-213 (822)
172 TIGR01448 recD_rel helicase, p 97.3 0.0008 1.7E-08 73.9 8.7 125 60-198 322-454 (720)
173 PRK08074 bifunctional ATP-depe 97.2 0.0011 2.3E-08 75.2 9.4 131 238-372 751-908 (928)
174 smart00489 DEXDc3 DEAD-like he 97.2 0.00079 1.7E-08 65.6 6.4 49 76-124 26-84 (289)
175 smart00488 DEXDc2 DEAD-like he 97.2 0.00079 1.7E-08 65.6 6.4 49 76-124 26-84 (289)
176 PF13401 AAA_22: AAA domain; P 97.1 0.00092 2E-08 56.7 5.8 23 76-98 3-25 (131)
177 COG0553 HepA Superfamily II DN 97.1 0.0025 5.4E-08 72.3 11.0 107 242-359 714-822 (866)
178 PRK06526 transposase; Provisio 97.1 0.00083 1.8E-08 64.1 5.4 73 76-170 97-172 (254)
179 PRK08181 transposase; Validate 97.0 0.0011 2.3E-08 63.7 5.9 74 76-171 105-181 (269)
180 PRK12723 flagellar biosynthesi 97.0 0.0018 3.8E-08 65.4 7.3 84 76-170 173-267 (388)
181 TIGR01447 recD exodeoxyribonuc 97.0 0.0029 6.2E-08 67.7 9.2 58 64-123 148-215 (586)
182 KOG1805 DNA replication helica 97.0 0.0032 6.9E-08 68.2 9.0 113 59-172 667-811 (1100)
183 PRK04296 thymidine kinase; Pro 96.9 0.00039 8.4E-09 63.5 1.8 33 77-109 2-38 (190)
184 COG1199 DinG Rad3-related DNA 96.9 0.005 1.1E-07 67.6 10.5 123 238-367 478-627 (654)
185 PRK10536 hypothetical protein; 96.9 0.0013 2.7E-08 62.0 4.5 37 58-96 56-93 (262)
186 PF01443 Viral_helicase1: Vira 96.8 0.0016 3.6E-08 61.3 5.3 96 80-199 1-100 (234)
187 PRK11747 dinG ATP-dependent DN 96.8 0.0069 1.5E-07 66.5 10.7 115 239-359 534-675 (697)
188 PF07517 SecA_DEAD: SecA DEAD- 96.8 0.002 4.3E-08 61.4 5.7 107 60-170 76-210 (266)
189 smart00382 AAA ATPases associa 96.8 0.00052 1.1E-08 58.5 1.5 36 77-112 2-41 (148)
190 COG3973 Superfamily I DNA and 96.8 0.0024 5.3E-08 65.9 6.4 81 43-128 192-287 (747)
191 PF06862 DUF1253: Protein of u 96.8 0.24 5.1E-06 50.7 20.3 112 238-358 299-414 (442)
192 cd00009 AAA The AAA+ (ATPases 96.7 0.0027 5.8E-08 54.5 5.6 34 76-109 18-55 (151)
193 PRK15483 type III restriction- 96.7 0.0086 1.9E-07 66.4 10.3 47 76-122 58-110 (986)
194 PRK10875 recD exonuclease V su 96.7 0.0048 1E-07 66.2 8.0 57 64-122 155-220 (615)
195 PRK12377 putative replication 96.7 0.0057 1.2E-07 58.0 7.5 73 77-170 101-176 (248)
196 COG1484 DnaC DNA replication p 96.7 0.0039 8.5E-08 59.5 6.4 74 76-170 104-180 (254)
197 PRK06921 hypothetical protein; 96.6 0.0039 8.4E-08 60.0 6.2 69 76-168 116-188 (266)
198 PRK07952 DNA replication prote 96.6 0.0075 1.6E-07 57.0 7.7 75 78-172 100-177 (244)
199 PRK08727 hypothetical protein; 96.6 0.006 1.3E-07 57.6 7.0 63 77-171 41-107 (233)
200 COG1419 FlhF Flagellar GTP-bin 96.5 0.0062 1.3E-07 60.8 6.7 83 76-169 202-293 (407)
201 TIGR03420 DnaA_homol_Hda DnaA 96.5 0.005 1.1E-07 57.7 5.9 21 76-96 37-57 (226)
202 TIGR03499 FlhF flagellar biosy 96.5 0.0067 1.4E-07 59.0 6.8 80 76-166 193-281 (282)
203 PF13173 AAA_14: AAA domain 96.5 0.028 6E-07 47.6 9.8 32 76-107 1-35 (128)
204 PF00580 UvrD-helicase: UvrD/R 96.4 0.0038 8.3E-08 61.5 4.8 48 76-123 12-67 (315)
205 PRK11747 dinG ATP-dependent DN 96.4 0.0043 9.3E-08 68.1 5.5 44 77-120 49-97 (697)
206 PRK08074 bifunctional ATP-depe 96.4 0.0045 9.9E-08 70.2 5.8 45 76-120 275-324 (928)
207 TIGR02768 TraA_Ti Ti-type conj 96.4 0.0088 1.9E-07 66.0 7.8 98 60-171 351-453 (744)
208 cd01124 KaiC KaiC is a circadi 96.4 0.0039 8.6E-08 56.5 4.3 49 79-128 1-53 (187)
209 PRK08084 DNA replication initi 96.4 0.0037 8E-08 59.1 4.2 19 77-95 45-63 (235)
210 PRK14722 flhF flagellar biosyn 96.3 0.0097 2.1E-07 59.7 7.2 83 76-169 136-227 (374)
211 PRK08116 hypothetical protein; 96.3 0.0086 1.9E-07 57.7 6.5 73 78-169 115-190 (268)
212 smart00492 HELICc3 helicase su 96.3 0.027 5.9E-07 48.5 8.9 86 269-357 27-137 (141)
213 PF05970 PIF1: PIF1-like helic 96.2 0.0072 1.6E-07 61.1 5.8 89 75-170 20-115 (364)
214 PF05496 RuvB_N: Holliday junc 96.2 0.0093 2E-07 54.9 5.8 19 78-96 51-69 (233)
215 PRK05703 flhF flagellar biosyn 96.2 0.035 7.7E-07 57.1 10.7 83 76-169 220-311 (424)
216 PRK06893 DNA replication initi 96.2 0.0061 1.3E-07 57.4 4.7 18 77-94 39-56 (229)
217 COG1199 DinG Rad3-related DNA 96.1 0.0064 1.4E-07 66.7 5.2 66 58-123 12-85 (654)
218 TIGR00604 rad3 DNA repair heli 96.1 0.0088 1.9E-07 66.0 5.9 68 56-123 5-82 (705)
219 TIGR03117 cas_csf4 CRISPR-asso 96.1 0.022 4.8E-07 61.1 8.6 118 238-358 469-616 (636)
220 PRK06835 DNA replication prote 95.9 0.017 3.8E-07 57.2 6.6 75 76-170 182-259 (329)
221 PRK09183 transposase/IS protei 95.8 0.022 4.7E-07 54.6 6.7 72 76-170 101-177 (259)
222 PRK13826 Dtr system oriT relax 95.8 0.025 5.5E-07 64.1 8.1 97 60-170 380-481 (1102)
223 PRK13889 conjugal transfer rel 95.8 0.019 4E-07 64.7 6.8 97 60-170 345-446 (988)
224 PRK08939 primosomal protein Dn 95.8 0.021 4.6E-07 56.1 6.4 72 76-170 155-230 (306)
225 PF05621 TniB: Bacterial TniB 95.8 0.01 2.2E-07 57.1 4.0 84 78-171 62-159 (302)
226 PF00448 SRP54: SRP54-type pro 95.7 0.019 4.1E-07 52.5 5.6 86 78-170 2-96 (196)
227 PRK08903 DnaA regulatory inact 95.7 0.026 5.6E-07 53.0 6.8 20 76-95 41-60 (227)
228 PTZ00293 thymidine kinase; Pro 95.6 0.021 4.6E-07 52.3 5.4 82 76-170 3-90 (211)
229 COG2256 MGS1 ATPase related to 95.6 0.036 7.8E-07 55.0 7.2 93 76-198 47-141 (436)
230 COG1875 NYN ribonuclease and A 95.6 0.016 3.5E-07 56.6 4.7 57 55-111 222-286 (436)
231 PF13555 AAA_29: P-loop contai 95.6 0.015 3.4E-07 41.9 3.5 26 77-102 23-50 (62)
232 PRK11823 DNA repair protein Ra 95.6 0.032 7E-07 57.9 7.2 81 76-170 79-169 (446)
233 smart00491 HELICc2 helicase su 95.6 0.074 1.6E-06 45.9 8.3 102 251-357 4-138 (142)
234 PRK11889 flhF flagellar biosyn 95.5 0.037 8E-07 55.5 6.9 82 77-169 241-332 (436)
235 cd01121 Sms Sms (bacterial rad 95.5 0.039 8.5E-07 55.7 7.3 81 76-170 81-171 (372)
236 PRK14974 cell division protein 95.5 0.02 4.3E-07 56.8 5.0 86 77-170 140-235 (336)
237 PRK14964 DNA polymerase III su 95.4 0.014 3.1E-07 60.6 4.1 19 77-95 35-53 (491)
238 PF00265 TK: Thymidine kinase; 95.4 0.092 2E-06 47.1 8.6 34 77-110 1-38 (176)
239 PRK14956 DNA polymerase III su 95.3 0.013 2.8E-07 60.4 3.2 21 78-98 41-61 (484)
240 COG2255 RuvB Holliday junction 95.3 0.02 4.3E-07 54.1 4.1 65 77-170 52-116 (332)
241 PF01695 IstB_IS21: IstB-like 95.2 0.04 8.7E-07 49.6 5.8 72 76-169 46-120 (178)
242 PF00004 AAA: ATPase family as 95.2 0.094 2E-06 44.1 7.9 20 80-99 1-20 (132)
243 PRK12726 flagellar biosynthesi 95.2 0.037 8.1E-07 55.3 5.9 83 76-169 205-297 (407)
244 PRK00149 dnaA chromosomal repl 95.2 0.035 7.6E-07 57.9 6.0 72 78-171 149-225 (450)
245 PF07728 AAA_5: AAA domain (dy 95.2 0.02 4.4E-07 49.1 3.6 16 79-94 1-16 (139)
246 TIGR00604 rad3 DNA repair heli 95.1 0.071 1.5E-06 59.0 8.5 117 238-358 521-674 (705)
247 PF12340 DUF3638: Protein of u 95.1 0.048 1E-06 50.5 6.0 47 76-123 40-91 (229)
248 PRK12727 flagellar biosynthesi 95.1 0.046 1E-06 57.0 6.3 83 76-169 349-440 (559)
249 PRK06067 flagellar accessory p 95.0 0.034 7.3E-07 52.5 5.1 52 76-128 24-79 (234)
250 COG2804 PulE Type II secretory 95.0 0.027 5.8E-07 57.8 4.4 36 63-98 243-279 (500)
251 PRK05642 DNA replication initi 94.9 0.039 8.5E-07 52.1 5.1 61 78-170 46-110 (234)
252 cd01120 RecA-like_NTPases RecA 94.9 0.071 1.5E-06 46.6 6.5 30 80-109 2-35 (165)
253 PF06745 KaiC: KaiC; InterPro 94.9 0.032 6.9E-07 52.4 4.4 51 76-127 18-73 (226)
254 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.045 9.7E-07 51.8 5.4 51 76-127 20-74 (237)
255 COG1219 ClpX ATP-dependent pro 94.8 0.026 5.6E-07 54.2 3.5 20 75-94 95-114 (408)
256 PRK14960 DNA polymerase III su 94.8 0.022 4.8E-07 60.7 3.4 19 77-95 37-55 (702)
257 PRK13851 type IV secretion sys 94.8 0.022 4.7E-07 56.8 3.1 38 76-113 161-201 (344)
258 PRK12900 secA preprotein trans 94.8 0.057 1.2E-06 59.9 6.5 91 80-170 154-271 (1025)
259 PRK04195 replication factor C 94.8 0.06 1.3E-06 56.7 6.5 25 77-101 39-63 (482)
260 TIGR00362 DnaA chromosomal rep 94.7 0.049 1.1E-06 56.0 5.7 71 78-171 137-213 (405)
261 PRK00080 ruvB Holliday junctio 94.7 0.051 1.1E-06 54.2 5.6 22 77-98 51-72 (328)
262 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.089 1.9E-06 50.5 7.1 52 76-127 35-93 (259)
263 PRK14958 DNA polymerase III su 94.7 0.021 4.7E-07 60.1 3.0 19 77-95 38-56 (509)
264 PRK14961 DNA polymerase III su 94.7 0.02 4.3E-07 57.9 2.7 21 78-98 39-59 (363)
265 PRK07003 DNA polymerase III su 94.7 0.023 4.9E-07 61.4 3.1 20 77-96 38-57 (830)
266 PLN03025 replication factor C 94.7 0.2 4.4E-06 49.7 9.7 20 77-96 34-53 (319)
267 TIGR03015 pepcterm_ATPase puta 94.7 0.037 8E-07 53.3 4.3 23 77-99 43-65 (269)
268 PF00308 Bac_DnaA: Bacterial d 94.6 0.11 2.3E-06 48.6 7.1 71 78-171 35-111 (219)
269 TIGR02688 conserved hypothetic 94.6 0.06 1.3E-06 54.5 5.6 21 75-95 207-227 (449)
270 PHA02544 44 clamp loader, smal 94.6 0.11 2.4E-06 51.4 7.7 32 78-109 44-76 (316)
271 PHA00729 NTP-binding motif con 94.6 0.14 3E-06 47.6 7.6 21 77-97 17-37 (226)
272 PRK14712 conjugal transfer nic 94.5 0.11 2.3E-06 61.2 8.3 102 60-171 834-944 (1623)
273 COG1618 Predicted nucleotide k 94.5 0.12 2.7E-06 44.7 6.5 19 78-96 6-24 (179)
274 PRK14723 flhF flagellar biosyn 94.5 0.072 1.6E-06 58.1 6.3 54 77-130 185-247 (767)
275 PHA00350 putative assembly pro 94.5 0.29 6.2E-06 49.5 10.2 29 79-107 3-35 (399)
276 PF05707 Zot: Zonular occluden 94.4 0.012 2.7E-07 53.7 0.4 29 79-107 2-34 (193)
277 PRK00771 signal recognition pa 94.4 0.084 1.8E-06 54.3 6.4 86 77-169 95-187 (437)
278 PRK13709 conjugal transfer nic 94.3 0.13 2.8E-06 61.3 8.5 101 60-170 966-1075(1747)
279 KOG0991 Replication factor C, 94.3 0.027 5.8E-07 51.7 2.3 21 75-95 46-66 (333)
280 TIGR00635 ruvB Holliday juncti 94.3 0.078 1.7E-06 52.2 5.8 22 77-98 30-51 (305)
281 PRK12323 DNA polymerase III su 94.3 0.036 7.7E-07 59.1 3.3 18 78-95 39-56 (700)
282 PRK07764 DNA polymerase III su 94.3 0.033 7.2E-07 61.8 3.3 20 77-96 37-56 (824)
283 PRK06645 DNA polymerase III su 94.2 0.033 7.1E-07 58.4 2.8 18 78-95 44-61 (507)
284 PRK12422 chromosomal replicati 94.1 0.09 1.9E-06 54.5 6.0 71 78-171 142-216 (445)
285 PRK14965 DNA polymerase III su 94.1 0.037 8.1E-07 59.4 3.2 20 77-96 38-57 (576)
286 COG4962 CpaF Flp pilus assembl 94.1 0.047 1E-06 53.3 3.6 58 59-116 155-215 (355)
287 PRK06995 flhF flagellar biosyn 94.1 0.14 2.9E-06 53.3 7.1 81 76-167 255-344 (484)
288 COG1474 CDC6 Cdc6-related prot 94.1 0.074 1.6E-06 53.6 5.1 25 70-94 35-59 (366)
289 PF13871 Helicase_C_4: Helicas 94.1 0.16 3.5E-06 48.6 7.1 64 280-346 52-116 (278)
290 KOG0989 Replication factor C, 94.1 0.03 6.4E-07 53.6 2.1 23 76-98 56-78 (346)
291 TIGR02760 TraI_TIGR conjugativ 94.0 0.16 3.5E-06 61.9 8.7 99 60-170 1018-1125(1960)
292 COG2805 PilT Tfp pilus assembl 94.0 0.056 1.2E-06 51.6 3.8 23 72-94 120-142 (353)
293 PRK14087 dnaA chromosomal repl 94.0 0.12 2.6E-06 53.7 6.7 74 78-171 142-220 (450)
294 PRK08691 DNA polymerase III su 94.0 0.042 9.1E-07 59.1 3.2 21 77-97 38-58 (709)
295 PF00437 T2SE: Type II/IV secr 94.0 0.042 9.2E-07 53.1 3.1 36 76-111 126-165 (270)
296 PRK13342 recombination factor 93.9 0.23 5E-06 51.2 8.6 22 77-98 36-57 (413)
297 PRK05563 DNA polymerase III su 93.9 0.071 1.5E-06 57.0 4.9 19 77-95 38-56 (559)
298 PRK05973 replicative DNA helic 93.9 0.08 1.7E-06 49.7 4.7 51 76-127 63-117 (237)
299 PRK07994 DNA polymerase III su 93.9 0.029 6.3E-07 60.3 1.8 18 78-95 39-56 (647)
300 PRK00411 cdc6 cell division co 93.9 0.14 3E-06 52.4 6.8 22 76-97 54-75 (394)
301 PRK14952 DNA polymerase III su 93.8 0.055 1.2E-06 57.8 3.9 20 78-97 36-55 (584)
302 TIGR00416 sms DNA repair prote 93.8 0.15 3.2E-06 53.1 6.9 82 76-170 93-183 (454)
303 PRK13833 conjugal transfer pro 93.8 0.056 1.2E-06 53.3 3.5 38 76-113 143-186 (323)
304 PRK14969 DNA polymerase III su 93.8 0.045 9.8E-07 58.0 3.1 19 78-96 39-57 (527)
305 PF02534 T4SS-DNA_transf: Type 93.7 0.095 2.1E-06 55.0 5.3 55 78-132 45-101 (469)
306 TIGR02782 TrbB_P P-type conjug 93.7 0.089 1.9E-06 51.5 4.7 38 76-113 131-174 (299)
307 cd01129 PulE-GspE PulE/GspE Th 93.7 0.079 1.7E-06 50.9 4.3 27 68-94 71-97 (264)
308 cd01126 TraG_VirD4 The TraG/Tr 93.6 0.07 1.5E-06 54.5 4.1 54 79-132 1-56 (384)
309 cd00544 CobU Adenosylcobinamid 93.6 0.092 2E-06 46.7 4.3 44 80-123 2-46 (169)
310 KOG0058 Peptide exporter, ABC 93.6 0.14 2.9E-06 54.8 6.1 45 76-120 493-542 (716)
311 PRK14962 DNA polymerase III su 93.6 0.043 9.4E-07 57.2 2.5 19 78-96 37-55 (472)
312 PF13872 AAA_34: P-loop contai 93.6 0.33 7.2E-06 46.8 8.2 97 76-172 61-187 (303)
313 PRK14949 DNA polymerase III su 93.6 0.048 1E-06 60.2 2.8 20 78-97 39-58 (944)
314 PRK13900 type IV secretion sys 93.6 0.05 1.1E-06 54.0 2.8 38 76-113 159-199 (332)
315 PHA03311 helicase-primase subu 93.5 0.21 4.5E-06 53.5 7.3 47 75-122 69-115 (828)
316 KOG0741 AAA+-type ATPase [Post 93.5 0.14 3.1E-06 52.5 5.9 59 156-216 323-395 (744)
317 KOG2340 Uncharacterized conser 93.5 0.68 1.5E-05 47.6 10.5 108 242-358 556-667 (698)
318 PRK10919 ATP-dependent DNA hel 93.5 0.099 2.1E-06 57.4 5.1 58 62-123 3-69 (672)
319 PRK10436 hypothetical protein; 93.5 0.081 1.7E-06 54.9 4.2 26 69-94 210-235 (462)
320 TIGR01075 uvrD DNA helicase II 93.4 0.081 1.8E-06 58.6 4.5 61 60-124 3-72 (715)
321 PRK14729 miaA tRNA delta(2)-is 93.4 0.089 1.9E-06 51.2 4.1 32 77-109 4-35 (300)
322 PRK14953 DNA polymerase III su 93.3 0.073 1.6E-06 55.8 3.6 19 153-171 115-133 (486)
323 PRK08533 flagellar accessory p 93.3 0.15 3.3E-06 47.9 5.5 50 76-126 23-76 (230)
324 PRK13341 recombination factor 93.3 0.35 7.6E-06 53.2 9.0 20 77-96 52-71 (725)
325 TIGR00631 uvrb excinuclease AB 93.2 0.17 3.6E-06 55.1 6.3 46 79-124 31-77 (655)
326 PF13207 AAA_17: AAA domain; P 93.2 0.066 1.4E-06 44.5 2.5 18 79-96 1-18 (121)
327 PRK11054 helD DNA helicase IV; 93.2 0.12 2.5E-06 56.6 5.0 60 60-123 195-263 (684)
328 PRK07133 DNA polymerase III su 93.2 0.087 1.9E-06 57.2 4.0 19 77-95 40-58 (725)
329 TIGR02760 TraI_TIGR conjugativ 93.1 0.13 2.8E-06 62.8 5.7 60 61-120 429-493 (1960)
330 PRK14955 DNA polymerase III su 93.1 0.11 2.4E-06 53.2 4.5 19 78-96 39-57 (397)
331 PRK14950 DNA polymerase III su 93.1 0.11 2.5E-06 55.9 4.8 21 77-97 38-58 (585)
332 cd01130 VirB11-like_ATPase Typ 93.0 0.096 2.1E-06 47.5 3.5 20 75-94 23-42 (186)
333 PRK14951 DNA polymerase III su 93.0 0.11 2.3E-06 55.9 4.3 18 78-95 39-56 (618)
334 PRK09111 DNA polymerase III su 93.0 0.069 1.5E-06 57.3 2.9 19 77-95 46-64 (598)
335 COG0467 RAD55 RecA-superfamily 93.0 0.16 3.5E-06 48.7 5.2 53 76-128 22-77 (260)
336 COG1702 PhoH Phosphate starvat 92.9 0.16 3.4E-06 49.6 5.0 66 59-136 126-197 (348)
337 PRK11773 uvrD DNA-dependent he 92.9 0.11 2.3E-06 57.7 4.5 61 60-124 8-77 (721)
338 PRK14088 dnaA chromosomal repl 92.9 0.19 4.2E-06 52.1 6.1 71 78-171 131-208 (440)
339 PRK05800 cobU adenosylcobinami 92.7 0.14 2.9E-06 45.7 4.0 44 79-122 3-47 (170)
340 PRK14957 DNA polymerase III su 92.7 0.096 2.1E-06 55.4 3.5 19 78-96 39-57 (546)
341 PF03266 NTPase_1: NTPase; In 92.7 0.63 1.4E-05 41.4 8.2 53 156-210 94-149 (168)
342 COG2812 DnaX DNA polymerase II 92.7 0.033 7.2E-07 57.9 0.0 18 154-171 116-133 (515)
343 TIGR02655 circ_KaiC circadian 92.6 0.18 3.9E-06 53.1 5.5 51 76-127 262-316 (484)
344 PHA03333 putative ATPase subun 92.6 1.2 2.5E-05 48.0 11.2 48 75-122 185-237 (752)
345 PRK13897 type IV secretion sys 92.6 0.21 4.5E-06 53.6 5.9 57 76-132 157-215 (606)
346 PHA03368 DNA packaging termina 92.6 1.4 3E-05 47.2 11.7 97 76-172 253-367 (738)
347 PRK14086 dnaA chromosomal repl 92.6 0.19 4.2E-06 53.5 5.5 72 78-171 315-391 (617)
348 PRK14948 DNA polymerase III su 92.5 0.094 2E-06 56.6 3.2 20 77-96 38-57 (620)
349 PF01745 IPT: Isopentenyl tran 92.4 0.14 3E-06 46.8 3.6 32 78-109 2-33 (233)
350 PF12846 AAA_10: AAA-like doma 92.4 0.16 3.5E-06 49.5 4.6 38 77-114 1-42 (304)
351 PF05127 Helicase_RecD: Helica 92.4 0.034 7.4E-07 49.6 -0.2 90 81-170 1-103 (177)
352 PLN02165 adenylate isopentenyl 92.4 0.14 3.1E-06 50.4 4.0 22 75-96 41-62 (334)
353 PRK05896 DNA polymerase III su 92.3 0.11 2.5E-06 55.2 3.5 20 77-96 38-57 (605)
354 PRK04328 hypothetical protein; 92.2 0.19 4.1E-06 47.9 4.5 51 76-127 22-76 (249)
355 TIGR03880 KaiC_arch_3 KaiC dom 92.2 0.25 5.3E-06 46.2 5.3 51 76-127 15-69 (224)
356 PRK14721 flhF flagellar biosyn 92.2 0.34 7.4E-06 49.6 6.5 80 76-166 190-278 (420)
357 PRK14959 DNA polymerase III su 92.1 0.16 3.4E-06 54.4 4.2 19 78-96 39-57 (624)
358 TIGR02538 type_IV_pilB type IV 92.0 0.16 3.4E-06 54.6 4.1 26 69-94 308-333 (564)
359 KOG1132 Helicase of the DEAD s 92.0 0.45 9.8E-06 51.8 7.4 64 290-355 624-719 (945)
360 TIGR03881 KaiC_arch_4 KaiC dom 92.0 0.29 6.3E-06 45.9 5.5 51 76-127 19-73 (229)
361 PF13238 AAA_18: AAA domain; P 92.0 0.11 2.3E-06 43.5 2.3 15 80-94 1-15 (129)
362 PRK10865 protein disaggregatio 91.9 0.87 1.9E-05 51.4 10.0 20 75-94 197-216 (857)
363 cd01131 PilT Pilus retraction 91.9 0.14 3.1E-06 46.9 3.3 17 78-94 2-18 (198)
364 TIGR02533 type_II_gspE general 91.9 0.14 3E-06 53.8 3.5 21 75-95 240-260 (486)
365 PRK08451 DNA polymerase III su 91.8 0.2 4.3E-06 52.9 4.5 18 78-95 37-54 (535)
366 COG1221 PspF Transcriptional r 91.8 0.22 4.8E-06 50.3 4.7 85 75-171 99-187 (403)
367 COG0470 HolB ATPase involved i 91.8 0.32 6.9E-06 48.2 5.9 18 79-96 26-43 (325)
368 TIGR02788 VirB11 P-type DNA tr 91.8 0.13 2.8E-06 50.7 3.0 19 76-94 143-161 (308)
369 PRK13894 conjugal transfer ATP 91.8 0.17 3.7E-06 50.0 3.7 19 76-94 147-165 (319)
370 COG1435 Tdk Thymidine kinase [ 91.8 0.26 5.7E-06 44.2 4.5 34 76-109 3-40 (201)
371 TIGR00064 ftsY signal recognit 91.8 0.49 1.1E-05 45.7 6.9 88 76-170 71-167 (272)
372 TIGR02237 recomb_radB DNA repa 91.7 0.24 5.3E-06 45.6 4.6 33 76-108 11-47 (209)
373 COG1444 Predicted P-loop ATPas 91.7 0.66 1.4E-05 50.5 8.3 101 68-170 222-336 (758)
374 PF13671 AAA_33: AAA domain; P 91.7 0.37 8E-06 41.2 5.4 24 79-102 1-24 (143)
375 PRK00091 miaA tRNA delta(2)-is 91.6 0.21 4.5E-06 49.0 4.2 24 77-100 4-27 (307)
376 PRK14954 DNA polymerase III su 91.5 0.096 2.1E-06 56.4 1.9 19 78-96 39-57 (620)
377 TIGR02655 circ_KaiC circadian 91.5 0.22 4.8E-06 52.4 4.6 52 76-128 20-76 (484)
378 KOG0745 Putative ATP-dependent 91.5 0.18 3.9E-06 50.5 3.6 27 76-102 225-253 (564)
379 TIGR00595 priA primosomal prot 91.3 0.77 1.7E-05 48.5 8.3 73 241-316 27-101 (505)
380 PRK12724 flagellar biosynthesi 91.3 0.56 1.2E-05 47.7 6.9 80 76-169 222-311 (432)
381 PRK14963 DNA polymerase III su 91.3 0.11 2.4E-06 54.6 2.0 18 78-95 37-54 (504)
382 PRK13850 type IV secretion sys 91.3 0.29 6.2E-06 53.2 5.2 57 75-131 137-195 (670)
383 PRK14530 adenylate kinase; Pro 91.2 0.16 3.4E-06 47.3 2.8 23 76-98 2-24 (215)
384 PRK07940 DNA polymerase III su 91.2 0.75 1.6E-05 46.9 7.8 20 77-96 36-55 (394)
385 TIGR02524 dot_icm_DotB Dot/Icm 91.2 0.18 4E-06 50.6 3.4 20 75-94 132-151 (358)
386 PF12775 AAA_7: P-loop contain 91.2 0.21 4.6E-06 48.2 3.7 25 76-100 32-56 (272)
387 PRK06731 flhF flagellar biosyn 91.1 0.61 1.3E-05 44.9 6.7 86 76-169 74-166 (270)
388 PRK13764 ATPase; Provisional 91.1 0.27 5.9E-06 52.5 4.7 30 76-105 256-288 (602)
389 TIGR02012 tigrfam_recA protein 91.1 0.45 9.6E-06 46.9 5.8 79 76-170 54-146 (321)
390 TIGR00678 holB DNA polymerase 91.0 1.6 3.5E-05 39.4 9.2 19 77-95 14-32 (188)
391 PRK09112 DNA polymerase III su 91.0 0.43 9.3E-06 47.9 5.8 18 78-95 46-63 (351)
392 PRK10867 signal recognition pa 90.9 0.64 1.4E-05 47.8 7.1 53 77-129 100-160 (433)
393 PRK13822 conjugal transfer cou 90.8 0.41 8.8E-06 51.9 5.8 57 76-132 223-281 (641)
394 TIGR01074 rep ATP-dependent DN 90.8 0.33 7.1E-06 53.5 5.2 47 77-123 14-68 (664)
395 TIGR01073 pcrA ATP-dependent D 90.8 0.28 6.1E-06 54.5 4.7 61 60-124 3-72 (726)
396 cd01394 radB RadB. The archaea 90.7 0.34 7.5E-06 45.0 4.6 32 76-107 18-53 (218)
397 TIGR02785 addA_Gpos recombinat 90.6 0.36 7.9E-06 56.7 5.6 58 62-123 2-67 (1232)
398 TIGR01420 pilT_fam pilus retra 90.6 0.25 5.5E-06 49.5 3.8 19 76-94 121-139 (343)
399 cd01127 TrwB Bacterial conjuga 90.6 0.19 4.2E-06 51.7 3.0 41 75-115 40-84 (410)
400 PRK05580 primosome assembly pr 90.6 1 2.2E-05 49.6 8.7 73 241-316 192-266 (679)
401 PRK10416 signal recognition pa 90.6 0.56 1.2E-05 46.3 6.1 88 76-170 113-209 (318)
402 PRK08233 hypothetical protein; 90.6 0.2 4.3E-06 44.9 2.8 22 76-97 2-23 (182)
403 KOG0739 AAA+-type ATPase [Post 90.5 0.31 6.8E-06 46.5 4.0 72 78-170 167-238 (439)
404 cd00983 recA RecA is a bacter 90.5 0.52 1.1E-05 46.5 5.7 49 76-127 54-106 (325)
405 COG4128 Zot Zonula occludens t 90.5 0.76 1.6E-05 43.8 6.4 89 79-171 3-95 (398)
406 COG0553 HepA Superfamily II DN 90.5 0.33 7.2E-06 55.1 5.1 111 60-171 337-486 (866)
407 TIGR03263 guanyl_kin guanylate 90.5 0.2 4.3E-06 45.0 2.6 22 77-98 1-22 (180)
408 PRK06647 DNA polymerase III su 90.4 0.22 4.8E-06 53.2 3.3 20 77-96 38-57 (563)
409 TIGR01547 phage_term_2 phage t 90.4 0.97 2.1E-05 46.3 8.0 94 78-171 2-115 (396)
410 PRK09361 radB DNA repair and r 90.3 0.4 8.7E-06 44.8 4.7 32 76-107 22-57 (225)
411 PF13177 DNA_pol3_delta2: DNA 90.3 1.6 3.6E-05 38.4 8.3 22 77-98 19-40 (162)
412 PRK08118 topology modulation p 90.2 0.2 4.4E-06 44.5 2.5 18 78-95 2-19 (167)
413 TIGR02397 dnaX_nterm DNA polym 90.2 0.32 7E-06 48.9 4.2 18 77-94 36-53 (355)
414 cd00984 DnaB_C DnaB helicase C 90.1 0.8 1.7E-05 43.2 6.6 42 76-117 12-61 (242)
415 TIGR02639 ClpA ATP-dependent C 90.0 1.6 3.4E-05 48.7 9.6 20 75-94 201-220 (731)
416 KOG2373 Predicted mitochondria 90.0 0.46 1E-05 46.3 4.7 47 76-122 272-325 (514)
417 PRK14971 DNA polymerase III su 90.0 0.34 7.3E-06 52.4 4.3 19 153-171 117-135 (614)
418 cd03115 SRP The signal recogni 90.0 0.69 1.5E-05 41.2 5.7 85 79-170 2-95 (173)
419 PRK05298 excinuclease ABC subu 89.9 0.63 1.4E-05 50.9 6.4 64 61-124 12-80 (652)
420 COG0563 Adk Adenylate kinase a 89.9 0.22 4.8E-06 44.7 2.4 18 79-96 2-19 (178)
421 TIGR02767 TraG-Ti Ti-type conj 89.8 0.63 1.4E-05 50.2 6.1 57 76-132 210-269 (623)
422 cd00227 CPT Chloramphenicol (C 89.8 0.25 5.5E-06 44.2 2.7 22 77-98 2-23 (175)
423 TIGR02525 plasmid_TraJ plasmid 89.8 0.28 6.1E-06 49.5 3.3 19 76-94 148-166 (372)
424 KOG2028 ATPase related to the 89.8 0.56 1.2E-05 46.1 5.1 95 77-200 162-261 (554)
425 COG0630 VirB11 Type IV secreto 89.7 0.29 6.3E-06 48.3 3.2 49 62-110 128-179 (312)
426 PRK00300 gmk guanylate kinase; 89.7 0.32 7E-06 44.6 3.4 22 76-97 4-25 (205)
427 PRK09354 recA recombinase A; P 89.7 0.62 1.3E-05 46.4 5.5 49 76-127 59-111 (349)
428 PRK05480 uridine/cytidine kina 89.6 0.5 1.1E-05 43.6 4.6 19 76-94 5-23 (209)
429 cd02023 UMPK Uridine monophosp 89.5 0.44 9.5E-06 43.6 4.2 15 80-94 2-16 (198)
430 COG0324 MiaA tRNA delta(2)-iso 89.5 0.42 9.1E-06 46.5 4.1 26 77-102 3-28 (308)
431 PRK07261 topology modulation p 89.5 0.25 5.4E-06 44.1 2.5 18 79-96 2-19 (171)
432 TIGR00235 udk uridine kinase. 89.5 0.42 9.1E-06 44.1 4.0 19 76-94 5-23 (207)
433 PRK14737 gmk guanylate kinase; 89.5 0.39 8.5E-06 43.5 3.7 25 76-100 3-27 (186)
434 PF13481 AAA_25: AAA domain; P 89.5 0.74 1.6E-05 41.7 5.6 47 76-123 31-91 (193)
435 TIGR00174 miaA tRNA isopenteny 89.4 0.42 9E-06 46.3 4.1 29 80-108 2-30 (287)
436 PRK10078 ribose 1,5-bisphospho 89.3 0.27 5.9E-06 44.5 2.6 18 77-94 2-19 (186)
437 TIGR02236 recomb_radA DNA repa 89.2 0.48 1E-05 46.8 4.5 32 76-107 94-135 (310)
438 cd00071 GMPK Guanosine monopho 89.2 0.33 7.2E-06 41.5 2.9 19 80-98 2-20 (137)
439 COG1126 GlnQ ABC-type polar am 89.2 0.27 5.9E-06 44.9 2.4 25 75-99 26-52 (240)
440 PLN02840 tRNA dimethylallyltra 89.1 0.42 9.2E-06 48.7 3.9 24 75-98 19-42 (421)
441 TIGR02322 phosphon_PhnN phosph 89.1 0.3 6.4E-06 43.8 2.6 18 77-94 1-18 (179)
442 PRK06762 hypothetical protein; 89.0 0.74 1.6E-05 40.6 5.1 21 78-98 3-23 (166)
443 cd00820 PEPCK_HprK Phosphoenol 89.0 0.63 1.4E-05 37.8 4.2 23 76-98 14-36 (107)
444 PRK06305 DNA polymerase III su 89.0 0.3 6.5E-06 50.8 2.9 20 77-96 39-58 (451)
445 PRK00131 aroK shikimate kinase 89.0 0.32 6.8E-06 43.2 2.7 21 76-96 3-23 (175)
446 KOG0741 AAA+-type ATPase [Post 89.0 1.3 2.7E-05 45.9 7.1 104 78-203 539-655 (744)
447 KOG1133 Helicase of the DEAD s 88.9 1.3 2.8E-05 47.1 7.4 117 235-356 625-778 (821)
448 cd01122 GP4d_helicase GP4d_hel 88.9 1.2 2.6E-05 42.9 6.9 32 76-107 29-65 (271)
449 PF02456 Adeno_IVa2: Adenoviru 88.9 0.49 1.1E-05 45.5 3.9 37 76-113 86-129 (369)
450 TIGR01425 SRP54_euk signal rec 88.8 1.3 2.9E-05 45.3 7.4 86 77-169 100-194 (429)
451 PRK04841 transcriptional regul 88.8 0.83 1.8E-05 52.2 6.6 32 76-107 31-62 (903)
452 cd01918 HprK_C HprK/P, the bif 88.7 0.51 1.1E-05 40.8 3.7 27 75-101 12-38 (149)
453 PF09439 SRPRB: Signal recogni 88.6 0.44 9.6E-06 42.7 3.4 25 76-100 2-26 (181)
454 PF01935 DUF87: Domain of unkn 88.6 0.53 1.2E-05 44.1 4.2 18 77-94 23-40 (229)
455 PRK05541 adenylylsulfate kinas 88.6 0.72 1.6E-05 41.2 4.8 19 76-94 6-24 (176)
456 PLN02748 tRNA dimethylallyltra 88.6 0.51 1.1E-05 48.9 4.2 24 75-98 20-43 (468)
457 PHA00012 I assembly protein 88.5 4 8.6E-05 40.0 9.8 21 79-99 3-23 (361)
458 TIGR02868 CydC thiol reductant 88.4 0.47 1E-05 50.7 4.0 19 76-94 360-378 (529)
459 COG4185 Uncharacterized protei 88.4 0.21 4.5E-06 43.3 1.0 39 78-116 3-41 (187)
460 PRK14531 adenylate kinase; Pro 88.3 0.35 7.7E-06 43.6 2.6 22 78-99 3-24 (183)
461 TIGR03743 SXT_TraD conjugative 88.3 1 2.3E-05 48.8 6.5 52 76-127 175-232 (634)
462 COG1110 Reverse gyrase [DNA re 88.2 1.3 2.8E-05 49.3 7.0 61 239-301 125-191 (1187)
463 PRK14873 primosome assembly pr 88.1 1.5 3.2E-05 47.9 7.6 58 241-300 190-249 (665)
464 TIGR01313 therm_gnt_kin carboh 88.1 0.51 1.1E-05 41.5 3.5 17 80-96 1-17 (163)
465 PRK05707 DNA polymerase III su 88.1 1.8 3.9E-05 43.0 7.6 19 77-95 22-40 (328)
466 PRK04301 radA DNA repair and r 88.0 0.63 1.4E-05 46.1 4.4 32 76-107 101-142 (317)
467 TIGR02639 ClpA ATP-dependent C 88.0 0.66 1.4E-05 51.6 5.0 16 79-94 486-501 (731)
468 COG1136 SalX ABC-type antimicr 88.0 0.36 7.7E-06 44.8 2.4 18 76-93 30-47 (226)
469 PF10412 TrwB_AAD_bind: Type I 88.0 0.55 1.2E-05 47.9 4.0 42 75-116 13-58 (386)
470 TIGR00959 ffh signal recogniti 88.0 1.3 2.9E-05 45.6 6.7 53 77-129 99-159 (428)
471 PF00625 Guanylate_kin: Guanyl 87.9 0.57 1.2E-05 42.2 3.7 26 76-101 1-26 (183)
472 COG1120 FepC ABC-type cobalami 87.8 0.59 1.3E-05 44.4 3.8 25 76-100 27-53 (258)
473 PF07724 AAA_2: AAA domain (Cd 87.8 0.41 8.8E-06 42.7 2.6 18 77-94 3-20 (171)
474 PRK09825 idnK D-gluconate kina 87.7 0.44 9.6E-06 42.7 2.8 19 76-94 2-20 (176)
475 TIGR02881 spore_V_K stage V sp 87.7 0.36 7.9E-06 46.3 2.4 18 77-94 42-59 (261)
476 COG2842 Uncharacterized ATPase 87.6 1.2 2.6E-05 42.8 5.7 107 75-196 92-202 (297)
477 COG5008 PilU Tfp pilus assembl 87.5 0.44 9.6E-06 44.8 2.7 23 76-98 126-148 (375)
478 TIGR02640 gas_vesic_GvpN gas v 87.5 0.66 1.4E-05 44.6 4.0 22 76-97 20-41 (262)
479 PRK08769 DNA polymerase III su 87.4 3.3 7.1E-05 40.9 8.9 18 78-95 27-44 (319)
480 COG0466 Lon ATP-dependent Lon 87.4 0.78 1.7E-05 49.2 4.7 88 75-185 348-444 (782)
481 PRK14532 adenylate kinase; Pro 87.4 0.73 1.6E-05 41.7 4.1 34 79-113 2-35 (188)
482 TIGR02974 phageshock_pspF psp 87.4 0.87 1.9E-05 45.3 4.9 84 76-171 21-107 (329)
483 TIGR00041 DTMP_kinase thymidyl 87.3 0.87 1.9E-05 41.4 4.6 19 76-94 2-20 (195)
484 PRK14527 adenylate kinase; Pro 87.3 0.62 1.3E-05 42.3 3.6 23 76-98 5-27 (191)
485 PRK10917 ATP-dependent DNA hel 87.3 2.3 4.9E-05 46.9 8.5 76 242-319 313-394 (681)
486 TIGR03819 heli_sec_ATPase heli 87.2 0.48 1E-05 47.3 3.0 38 76-113 177-217 (340)
487 cd01123 Rad51_DMC1_radA Rad51_ 87.1 0.83 1.8E-05 42.9 4.5 23 76-98 18-40 (235)
488 COG1223 Predicted ATPase (AAA+ 87.1 0.87 1.9E-05 42.8 4.3 38 77-114 151-188 (368)
489 COG3587 Restriction endonuclea 87.0 0.46 1E-05 51.6 2.8 46 75-120 72-123 (985)
490 PRK06696 uridine kinase; Valid 87.0 0.87 1.9E-05 42.5 4.5 19 76-94 21-39 (223)
491 PRK09302 circadian clock prote 87.0 1.1 2.4E-05 47.6 5.8 52 76-128 272-327 (509)
492 TIGR02880 cbbX_cfxQ probable R 87.0 0.45 9.8E-06 46.3 2.6 18 77-94 58-75 (284)
493 PRK10787 DNA-binding ATP-depen 87.0 1 2.2E-05 50.2 5.7 19 76-94 348-366 (784)
494 PTZ00301 uridine kinase; Provi 87.0 0.49 1.1E-05 43.7 2.7 18 77-94 3-20 (210)
495 cd02019 NK Nucleoside/nucleoti 86.9 0.49 1.1E-05 35.0 2.2 15 80-94 2-16 (69)
496 KOG1969 DNA replication checkp 86.9 0.46 1E-05 50.9 2.7 27 76-102 325-351 (877)
497 PF13476 AAA_23: AAA domain; P 86.9 0.62 1.3E-05 42.2 3.4 24 76-99 18-43 (202)
498 TIGR03346 chaperone_ClpB ATP-d 86.8 4.4 9.5E-05 46.0 10.7 20 75-94 192-211 (852)
499 PRK14970 DNA polymerase III su 86.8 0.24 5.2E-06 50.2 0.6 20 77-96 39-58 (367)
500 TIGR01359 UMP_CMP_kin_fam UMP- 86.8 0.73 1.6E-05 41.4 3.7 30 79-109 1-30 (183)
No 1
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.8e-81 Score=610.03 Aligned_cols=447 Identities=49% Similarity=0.830 Sum_probs=432.2
Q ss_pred cCCCCCCccccchHHHhcCCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc
Q 010534 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137 (508)
Q Consensus 58 ~~~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~ 137 (508)
.+++++.|..|||.+|+++++.++++|||+||||+-|++.+.+.++++|+-|.|.||.++++++++.|++|.++||++++
T Consensus 172 ~isDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~ 251 (700)
T KOG0953|consen 172 KISDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERR 251 (700)
T ss_pred hhhccCCCcccCchhHhhhheEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceee
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCC----CcEEEEcceeccccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCCcE
Q 010534 138 EVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213 (508)
Q Consensus 138 ~~~~----~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (508)
.... +.++.||+||.+....+++.||||+|++.|++|||+|+++|+|+.++++++||.++.+++++.+++.+|+++
T Consensus 252 ~~~~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~v 331 (700)
T KOG0953|consen 252 FVLDNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDV 331 (700)
T ss_pred ecCCCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCee
Confidence 7665 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecCCCCCCCCccccccccCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCee
Q 010534 214 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (508)
Q Consensus 214 ~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ 293 (508)
++..|+|+.|+...+..+..+.++++|||||+||++++..+...+++.+..+++++||++||+.|.++...|+++.++.+
T Consensus 332 ev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d 411 (700)
T KOG0953|consen 332 EVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECD 411 (700)
T ss_pred EEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccc
Confidence 99999999999999988899999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCch
Q 010534 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM 373 (508)
Q Consensus 294 ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 373 (508)
||||||+++||+|+.|++||+++..||+|.+..+++.++.+|.+|||||.|..+..|.+++++.++++.+++.++.+.++
T Consensus 412 vlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 412 VLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEP 491 (700)
T ss_pred eEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCCh
Q 010534 374 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 453 (508)
Q Consensus 374 i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~ 453 (508)
+..+++.|..+++..|+.++|+..+..+++.|......+..|++|++++...++.+++++++++.+||.||.+|++.++|
T Consensus 492 i~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p 571 (700)
T KOG0953|consen 492 IKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMP 571 (700)
T ss_pred HHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCcccchhh--ccCCCCCCCCcHHHHHHHHHHhhHhhh
Q 010534 454 ISSQGLTQFATNYSKKGIVQLREI--FTPGTLQVPKTQAALRELESIHKVGLF 504 (508)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~~~~~~~ 504 (508)
.++.+|++||+.|+.++++++..+ .-.||...|++..+|..||++|++|+.
T Consensus 572 ~v~~~f~kfa~~~s~~~~l~~~~l~~~~~~p~~~p~t~~~L~~LEs~h~il~l 624 (700)
T KOG0953|consen 572 RVCSAFLKFARQYSQNEPLTFLWLKFNLGWPNKIPKTIYELEDLESLHDILDL 624 (700)
T ss_pred hHHHHHHHHHHHHhcCCcccHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999996322 234777899999999999999999874
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-46 Score=375.63 Aligned_cols=378 Identities=20% Similarity=0.243 Sum_probs=308.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC-----CEEEEcchHHHHHHHHHHHH-hCCCceeeecccccccc----CCCcEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEV----DGAKHR 145 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~-----~~i~l~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~----~~~~~i 145 (508)
+++++||.|+||||||++.+|+|.++| ++.+.+|+|..|..+++|++ +.|...+..+|+..++. ..+.+.
T Consensus 65 ~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Trik 144 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIK 144 (674)
T ss_pred HCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEE
Confidence 599999999999999999999998764 45666999999999999998 56777777777665553 367888
Q ss_pred EEcceec-------cccCCccEEEEccccccCCCCcChHHHHHHhcccCC------ceEEEccCCcc--hHHHHHHh---
Q 010534 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAV--PLIQQILQ--- 207 (508)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~------~~~~~~~~~~~--~~~~~l~~--- 207 (508)
++|..++ ..+.+|++|||||||+++-. +++|+|+.++ .++++-++++. ..+..++.
T Consensus 145 ymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~------TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~ 218 (674)
T KOG0922|consen 145 YMTDGMLLREILKDPLLSKYSVIILDEAHERSLH------TDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAP 218 (674)
T ss_pred EecchHHHHHHhcCCccccccEEEEechhhhhhH------HHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCc
Confidence 9998665 35799999999999999876 9999998753 34555555554 34455544
Q ss_pred ---HcCCcEEEEeeeecCCCCCC-CCcccc----ccccCCCCEEEEe-eHHHHHHHHHHHHhcCC-------CeEEEEcC
Q 010534 208 ---VTGDDVKVQSYERLSPLVPL-NVPLGS----FSNIQTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYG 271 (508)
Q Consensus 208 ---~~~~~~~v~~~~~~~~~~~~-~~~l~~----l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~lhg 271 (508)
..|+.++|..++...+.... ...+.. ....++||++||+ ++++++.+++.|.+... .-+.++||
T Consensus 219 i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 219 ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 35677777776655444332 222222 2335899999999 59999999999987521 13678999
Q ss_pred CCCHHHHHHHHHHhcC-CCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccC
Q 010534 272 SLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRA 340 (508)
Q Consensus 272 ~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRa 340 (508)
+||.+ ++.+.|.. |+|.+||++|||++|++++|| |.+||+.|..| |++. ...|+|.++..||+|||
T Consensus 299 aL~~e---~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRA 375 (674)
T KOG0922|consen 299 ALPSE---EQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRA 375 (674)
T ss_pred cCCHH---HhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccC
Confidence 99999 67777877 559999999999999999996 99999999876 7775 36789999999999999
Q ss_pred CCCCCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccCh
Q 010534 341 GRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC 420 (508)
Q Consensus 341 gR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (508)
||.|+ |.||++|+++ .+++|.....|+|++.++...+++++. .++.+.+. |.++++|+......++
T Consensus 376 GRt~p----GkcyRLYte~--~~~~~~~~~~PEI~R~~Ls~~vL~Lka-------lgi~d~l~-F~f~d~P~~~~l~~AL 441 (674)
T KOG0922|consen 376 GRTGP----GKCYRLYTES--AYDKMPLQTVPEIQRVNLSSAVLQLKA-------LGINDPLR-FPFIDPPPPEALEEAL 441 (674)
T ss_pred CCCCC----ceEEEeeeHH--HHhhcccCCCCceeeechHHHHHHHHh-------cCCCCccc-CCCCCCCChHHHHHHH
Confidence 99999 9999999987 779999999999999999999999998 78888887 9999999999999999
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhcc
Q 010534 421 EEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479 (508)
Q Consensus 421 ~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 479 (508)
++|..++++.++..++..-...++..|+ +|.+.++++...+.-|..+.+++..++.
T Consensus 442 ~~L~~lgald~~g~lt~p~G~~ma~~Pl---~p~lsk~ll~s~~~gc~~e~l~i~a~Ls 497 (674)
T KOG0922|consen 442 EELYSLGALDDRGKLTSPLGRQMAELPL---EPHLSKMLLKSSELGCSEEILTIAAMLS 497 (674)
T ss_pred HHHHhcCcccCcCCcCchHHhhhhhcCC---CcchhhhhhhccccCCcchhhhheeeee
Confidence 9999999999998877744456899999 6888999998888889998888865543
No 3
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-45 Score=361.80 Aligned_cols=379 Identities=20% Similarity=0.241 Sum_probs=303.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC-----C-EEEEcchHHHHHHHHHHHH-hCCCceeeeccccccccC----CCcE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS-----S-GIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEVD----GAKH 144 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~-----~-~i~l~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~----~~~~ 144 (508)
.+++++|.|.||||||++.+|+|.++| + +-+.+|+|..|..++.|++ ++|++.+.-.|+..++.+ .+.+
T Consensus 279 e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvl 358 (902)
T KOG0923|consen 279 EHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVL 358 (902)
T ss_pred hCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcceee
Confidence 599999999999999999999998764 3 3344999999999999998 578887777777666544 4556
Q ss_pred EEEcceec-------cccCCccEEEEccccccCCCCcChHHHHHHhcccCC------ceEEEccCCcch--HHHHHH---
Q 010534 145 RAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAVP--LIQQIL--- 206 (508)
Q Consensus 145 iv~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~------~~~~~~~~~~~~--~~~~l~--- 206 (508)
-++|..|+ ..|..|++|||||||++.-. +++|+|+.++ .+.++-++++.+ -+..++
T Consensus 359 KYMTDGmLlREfL~epdLasYSViiiDEAHERTL~------TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDda 432 (902)
T KOG0923|consen 359 KYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLH------TDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDA 432 (902)
T ss_pred eeecchhHHHHHhccccccceeEEEeehhhhhhhh------hhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCC
Confidence 68888776 24689999999999999876 8999887753 344444444442 233333
Q ss_pred ---hHcCCcEEEEeeeecCCCCCC-CCccccc----cccCCCCEEEEe-eHHHHHHHHHHHHhc----CC----CeEEEE
Q 010534 207 ---QVTGDDVKVQSYERLSPLVPL-NVPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIESR----GK----HLCSIV 269 (508)
Q Consensus 207 ---~~~~~~~~v~~~~~~~~~~~~-~~~l~~l----~~~~~~~~iv~~-s~~~~~~l~~~L~~~----~~----~~v~~l 269 (508)
..+|+.++|..++...|.... ...+..+ ...+.|+++||+ .+++++...+.|.+. |. .-++++
T Consensus 433 pIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~Pi 512 (902)
T KOG0923|consen 433 PIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPI 512 (902)
T ss_pred cEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeec
Confidence 346778888888877765433 2222222 233679999999 488888777777653 21 248999
Q ss_pred cCCCCHHHHHHHHHHhcC-CCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhc
Q 010534 270 YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAG 338 (508)
Q Consensus 270 hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~G 338 (508)
|+.+|.+ .+.+.|.. |+|.++|++|||+++++++|| |.+||+-|..| |++. -..|+|.++..||+|
T Consensus 513 YaNLPse---lQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaG 589 (902)
T KOG0923|consen 513 YANLPSE---LQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAG 589 (902)
T ss_pred cccCChH---HHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhcc
Confidence 9999999 66667776 779999999999999999995 99999998877 6665 368999999999999
Q ss_pred cCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCcccc
Q 010534 339 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418 (508)
Q Consensus 339 RagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
||||.|+ |.||++|... .+..++-..+.|+|++.+|...++.|+. .++.+++. |.++++|+.+..+.
T Consensus 590 RAGRtgP----GKCfRLYt~~-aY~~eLE~~t~PEIqRtnL~nvVL~LkS-------LGI~Dl~~-FdFmDpPp~etL~~ 656 (902)
T KOG0923|consen 590 RAGRTGP----GKCFRLYTAW-AYEHELEEMTVPEIQRTNLGNVVLLLKS-------LGIHDLIH-FDFLDPPPTETLLK 656 (902)
T ss_pred ccCCCCC----CceEEeechh-hhhhhhccCCCcceeeccchhHHHHHHh-------cCcchhcc-cccCCCCChHHHHH
Confidence 9999999 9999999865 3444455677799999999999999997 99999998 99999999999999
Q ss_pred ChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhccC
Q 010534 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP 480 (508)
Q Consensus 419 ~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (508)
+++.|..||++.....++-.++. ++..|+ +|++.+.++.....-|..+.+++.+++..
T Consensus 657 aLE~LyaLGALn~~GeLTk~Grr-MaEfP~---dPmlsKmi~as~ky~cs~EiitiaamlS~ 714 (902)
T KOG0923|consen 657 ALEQLYALGALNHLGELTKLGRR-MAEFPV---DPMLSKMIVASEKYKCSEEIITIAAMLSV 714 (902)
T ss_pred HHHHHHHhhccccccchhhhhhh-hhhcCC---CHHHHhHHhhhccccchHHHHHHHHHHhc
Confidence 99999999999999999999987 899999 79999999877766677788888766543
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-44 Score=357.36 Aligned_cols=381 Identities=20% Similarity=0.247 Sum_probs=303.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC---CE-EEE-cchHHHHHHHHHHHH-hCCCceeeecccccccc----CCCcEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS---SG-IYC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEV----DGAKHR 145 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~---~~-i~l-~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~----~~~~~i 145 (508)
.|++++|+|+||||||++..|+|.+.| .+ |-| +|+|..|..++++++ ++|...+.-.|+..++. +++.+-
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~Ik 449 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIK 449 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEE
Confidence 499999999999999999999998765 22 333 999999999999998 57777777777665554 356677
Q ss_pred EEcceec-------cccCCccEEEEccccccCCCCcChHHHHHHhcccC------CceEEEccCCcc--hHHHHHHh---
Q 010534 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA------NELHLCGDPAAV--PLIQQILQ--- 207 (508)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~------~~~~~~~~~~~~--~~~~~l~~--- 207 (508)
++|..++ ..|.+|++||+||||+++.+ +++++|+.+ ..+.++-++++. .-+..++.
T Consensus 450 ymTDGiLLrEsL~d~~L~kYSviImDEAHERslN------tDilfGllk~~larRrdlKliVtSATm~a~kf~nfFgn~p 523 (1042)
T KOG0924|consen 450 YMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN------TDILFGLLKKVLARRRDLKLIVTSATMDAQKFSNFFGNCP 523 (1042)
T ss_pred EeccchHHHHHhhhhhhhheeEEEechhhhcccc------hHHHHHHHHHHHHhhccceEEEeeccccHHHHHHHhCCCc
Confidence 8887554 34799999999999999887 899988764 345555444443 22333332
Q ss_pred ---HcCCcEEEEeeeecCCCCCC-C----CccccccccCCCCEEEEee-HHHHHHHHHHHHhc-------C--CCeEEEE
Q 010534 208 ---VTGDDVKVQSYERLSPLVPL-N----VPLGSFSNIQTGDCIVTFS-RHAIYRLKKAIESR-------G--KHLCSIV 269 (508)
Q Consensus 208 ---~~~~~~~v~~~~~~~~~~~~-~----~~l~~l~~~~~~~~iv~~s-~~~~~~l~~~L~~~-------~--~~~v~~l 269 (508)
..|+.++|...+...|.+.. . ..+.......+|+++||.+ ++.++..+..+... + ...|.++
T Consensus 524 ~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpi 603 (1042)
T KOG0924|consen 524 QFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPI 603 (1042)
T ss_pred eeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEee
Confidence 35567777776666665433 1 2222223346799999984 66666555555432 2 4579999
Q ss_pred cCCCCHHHHHHHHHHhcC-CCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhc
Q 010534 270 YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAG 338 (508)
Q Consensus 270 hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~G 338 (508)
|+.||.+ .+.+.|.. ++|.+++|||||+++++++|| |.+||+.+..| |++. ...|+|.++..||+|
T Consensus 604 YSQLp~d---lQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaG 680 (1042)
T KOG0924|consen 604 YSQLPAD---LQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAG 680 (1042)
T ss_pred hhhCchh---hhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhcc
Confidence 9999999 66777775 568999999999999999996 99999999876 6654 578999999999999
Q ss_pred cCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCcccc
Q 010534 339 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418 (508)
Q Consensus 339 RagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
||||.|+ |.||++|.++ .+.++|+..+.|+|++.++...++.|+. .++.++++ |.++++|+...++.
T Consensus 681 RAGRt~p----G~cYRlYTe~-ay~~eml~stvPEIqRTNl~nvVLlLks-------lgV~dll~-FdFmD~Pped~~~~ 747 (1042)
T KOG0924|consen 681 RAGRTGP----GTCYRLYTED-AYKNEMLPSTVPEIQRTNLSNVVLLLKS-------LGVDDLLK-FDFMDPPPEDNLLN 747 (1042)
T ss_pred ccCCCCC----cceeeehhhh-HHHhhcccCCCchhhhcchhhHHHHHHh-------cChhhhhC-CCcCCCCHHHHHHH
Confidence 9999999 9999999986 5778899999999999999999999997 89988887 99999999998999
Q ss_pred ChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhccCCC
Q 010534 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGT 482 (508)
Q Consensus 419 ~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 482 (508)
++-+|-.||++.....|+..++- +...|+ ||.+.+.|+-.++.-|.++.+++-.|+..|.
T Consensus 748 sly~Lw~LGAl~~~g~LT~lG~~-MvefpL---DP~lsKmll~a~~~Gc~dEilsIvSmLSvp~ 807 (1042)
T KOG0924|consen 748 SLYQLWTLGALDNTGQLTPLGRK-MVEFPL---DPPLSKMLLMAARMGCSDEILSIVSMLSVPA 807 (1042)
T ss_pred HHHHHHHhhccccCCccchhhHH-hhhCCC---CchHHHHHHHHhccCcHHHHHHHHHHhcccc
Confidence 99999999999998889998876 899999 6889999999999999999888866655443
No 5
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-42 Score=376.01 Aligned_cols=386 Identities=17% Similarity=0.128 Sum_probs=282.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcchHHHHHHHHHHHH-hCCCc----eeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLN-KANVS----CDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P~r~La~q~~~~l~-~~g~~----~~~~~g~~~~~~~~~~~iv 146 (508)
++++++++|+||||||+++++++++ ++++++++|+|++|.|++++++ .+|.. ++...+.+.....++.+++
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~v 95 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEV 95 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEEE
Confidence 5889999999999999999988874 3578999999999999999996 45444 4444444333345678999
Q ss_pred Ecceecc-------ccCCccEEEEcccccc-CCCCcChHHHHHHhcccCCceEEEccCCcch--HHHHHHhH------cC
Q 010534 147 VTVEMAD-------VVSDYDCAVIDEIQML-GCKTRGFSFTRALLGICANELHLCGDPAAVP--LIQQILQV------TG 210 (508)
Q Consensus 147 ~T~e~~~-------~l~~~~~iViDEah~~-~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~--~~~~l~~~------~~ 210 (508)
+|+..+. .++++++|||||+|++ .+.+.+..+...+........+++.++++.+ .+..++.. .|
T Consensus 96 ~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~l~~~l~~~~vI~~~g 175 (819)
T TIGR01970 96 VTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEG 175 (819)
T ss_pred ECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHcCCCcEEEecC
Confidence 9985542 3688999999999975 4333344443333332234455555555543 22333211 12
Q ss_pred CcEEEEeeeecCCCCCC-----CCccccccccCCCCEEEEe-eHHHHHHHHHHHHhc--CCCeEEEEcCCCCHHHHHHHH
Q 010534 211 DDVKVQSYERLSPLVPL-----NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQA 282 (508)
Q Consensus 211 ~~~~v~~~~~~~~~~~~-----~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~lhg~l~~~~R~~~~ 282 (508)
..+++..++...+.... ...+..+.+...|+++||+ ++.+++.+++.|++. ....+.++||+|++++|.+++
T Consensus 176 r~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 176 RSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred cceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHH
Confidence 23333333322211100 0111122223468888888 899999999999873 245899999999999999999
Q ss_pred HHhcCCCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCCCCCCCcEEE
Q 010534 283 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (508)
Q Consensus 283 ~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~ 352 (508)
+.|++ |+++||||||++|+||||| |++||+++.++ ||+. ...|+|.+++.||+|||||.++ |.|
T Consensus 256 ~~~~~--G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~----G~c 329 (819)
T TIGR01970 256 KPDPQ--GRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP----GVC 329 (819)
T ss_pred hhccc--CCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC----CEE
Confidence 99998 9999999999999999996 99999999875 7664 3578999999999999999976 999
Q ss_pred EEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhc
Q 010534 353 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 432 (508)
|++++++ .+..+.....|+|.+.++.+.++.++.+. ..+.. .|.++++|+......+.+.|..++++.++
T Consensus 330 yrL~t~~--~~~~l~~~~~PEI~r~~L~~~~L~l~~~g-------~~~~~-~~~~l~~P~~~~i~~a~~~L~~lgald~~ 399 (819)
T TIGR01970 330 YRLWSEE--QHQRLPAQDEPEILQADLSGLALELAQWG-------AKDPS-DLRWLDAPPSVALAAARQLLQRLGALDAQ 399 (819)
T ss_pred EEeCCHH--HHHhhhcCCCcceeccCcHHHHHHHHHcC-------CCChh-hCCCCCCcCHHHHHHHHHHHHHCCCCCCC
Confidence 9999876 56778889999999999999999999753 22222 26667777777777888888899988877
Q ss_pred CCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhccCC
Q 010534 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481 (508)
Q Consensus 433 ~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 481 (508)
..++..++. ++..|+ +|.+..+++.....-|....+.+..++...
T Consensus 400 ~~lT~~G~~-~~~lp~---~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~ 444 (819)
T TIGR01970 400 GRLTAHGKA-MAALGC---HPRLAAMLLSAHSTGLAALACDLAALLEER 444 (819)
T ss_pred CCcCHHHHH-HHhcCC---CHHHHHHHHHhhhcCCHHHHHHHHHHHcCC
Confidence 789999977 899999 788888888765554555555665565543
No 6
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-42 Score=368.28 Aligned_cols=380 Identities=20% Similarity=0.170 Sum_probs=305.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC-----CEEEEcchHHHHHHHHHHHH-hCCCceeeecccccccc----CCCcEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEV----DGAKHR 145 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~-----~~i~l~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~----~~~~~i 145 (508)
++++++|+||||||||++.++.+++.+ .+.+.+|+|..|..++++++ ++|.+++-..|+..+.. .++.+-
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik 143 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIK 143 (845)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeE
Confidence 689999999999999999999998765 34556999999999999998 56888777777765543 467888
Q ss_pred EEcceec-------cccCCccEEEEccccccCCCCcChHHHHHHhcccCC-------ceEEEccCCcch--HHHHHHh--
Q 010534 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-------ELHLCGDPAAVP--LIQQILQ-- 207 (508)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~-------~~~~~~~~~~~~--~~~~l~~-- 207 (508)
++|..++ ..|++|++|||||||+++-+ +++++|+.++ .++++-++++.+ .+..++.
T Consensus 144 ~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~------tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~a 217 (845)
T COG1643 144 VMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN------TDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNA 217 (845)
T ss_pred EeccHHHHHHHhhCcccccCCEEEEcchhhhhHH------HHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCC
Confidence 9998665 34799999999999999876 7888776543 466666666653 3334433
Q ss_pred ----HcCCcEEEEeeeecCCCCCC--CC----ccccccccCCCCEEEEe-eHHHHHHHHHHHHh--c-CCCeEEEEcCCC
Q 010534 208 ----VTGDDVKVQSYERLSPLVPL--NV----PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIES--R-GKHLCSIVYGSL 273 (508)
Q Consensus 208 ----~~~~~~~v~~~~~~~~~~~~--~~----~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~--~-~~~~v~~lhg~l 273 (508)
..|+.++|..++........ .. .+.......+|++++|+ ..++++.+++.|++ . ....|+++||.|
T Consensus 218 pvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L 297 (845)
T COG1643 218 PVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGAL 297 (845)
T ss_pred CEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccC
Confidence 35667788777655443222 11 11223345789999999 69999999999987 3 235799999999
Q ss_pred CHHHHHHHHHHhcC-CCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCC
Q 010534 274 PPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGR 342 (508)
Q Consensus 274 ~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR 342 (508)
+.++ +.+.|+. +.|+++|++|||++|+||+|| |++||+.+..| ||+. ...|+|.+++.||+|||||
T Consensus 298 ~~~e---Q~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR 374 (845)
T COG1643 298 SAEE---QVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR 374 (845)
T ss_pred CHHH---HHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc
Confidence 9995 5556666 336688999999999999995 99999999775 7764 4789999999999999999
Q ss_pred CCCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHH-HHHHHHHHhcccCCCccccChH
Q 010534 343 YGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY-GILEHFLENAKLSENYFFANCE 421 (508)
Q Consensus 343 ~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.++ |+||.+|+++ .+..+.+...|+|.+.++.+.++.++. .++. +... |.++++|+......+.+
T Consensus 375 ~~p----GicyRLyse~--~~~~~~~~t~PEIlrtdLs~~vL~l~~-------~G~~~d~~~-f~fld~P~~~~i~~A~~ 440 (845)
T COG1643 375 TGP----GICYRLYSEE--DFLAFPEFTLPEILRTDLSGLVLQLKS-------LGIGQDIAP-FPFLDPPPEAAIQAALT 440 (845)
T ss_pred CCC----ceEEEecCHH--HHHhcccCCChhhhhcchHHHHHHHHh-------cCCCCCccc-CccCCCCChHHHHHHHH
Confidence 999 9999999986 666999999999999999999999997 6663 6665 88999999988999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhccCCC
Q 010534 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGT 482 (508)
Q Consensus 422 ~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 482 (508)
.|..+|++.+...++..++. ++.+|+ +|.+..+++.....-|..+...+..++....
T Consensus 441 ~L~~LGAld~~g~LT~lG~~-ms~lpl---dprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~ 497 (845)
T COG1643 441 LLQELGALDDSGKLTPLGKQ-MSLLPL---DPRLARMLLTAPEGGCLGEAATIASMLSEQD 497 (845)
T ss_pred HHHHcCCcCCCCCCCHHHHH-HHhCCC---ChHHHHHHHhccccCcHHHHHHHHHhhccCC
Confidence 99999999999999999988 999999 6888889998888777777777766665554
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-42 Score=322.60 Aligned_cols=297 Identities=17% Similarity=0.166 Sum_probs=240.0
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH----HHHcCC---CEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLESSS---SGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~----~l~~~~---~~i~l~P~r 111 (508)
.+++.+.+++... ++..||++|. ++|.+ +++++||..|.||||||.+++. .|++.+ .+++++|||
T Consensus 67 gv~~~L~~ac~~l-----~~~~PT~IQ~~aiP~~--L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtR 139 (476)
T KOG0330|consen 67 GVHPELLEACQEL-----GWKKPTKIQSEAIPVA--LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTR 139 (476)
T ss_pred CcCHHHHHHHHHh-----CcCCCchhhhhhcchh--hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcH
Confidence 4789999999999 9999999999 99999 7799999999999999999744 444443 679999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEccee-ccc--------cCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEM-ADV--------VSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~-~~~--------l~~~~~iViDEah~~~~~ 172 (508)
+||.|+++.+..+ |+.|.++.|+.... .+...++|+||.. +++ +.+++++|+||||.+.++
T Consensus 140 ELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~ 219 (476)
T KOG0330|consen 140 ELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM 219 (476)
T ss_pred HHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh
Confidence 9999999999876 67788888876433 3467788999943 333 478999999999999999
Q ss_pred CcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEEE------------eeeecCCCCCCCCcc-ccccccC
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQ------------SYERLSPLVPLNVPL-GSFSNIQ 238 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~------------~~~~~~~~~~~~~~l-~~l~~~~ 238 (508)
+++..+..+|-.++.....++.+++....+.++.....+ ...+. .++...+...+...+ ..+.+..
T Consensus 220 dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~ 299 (476)
T KOG0330|consen 220 DFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELA 299 (476)
T ss_pred hhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhc
Confidence 888888888888888888888887777777776643322 22221 112333444444444 3344445
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+..+||+ +...+..++-.|+..+. .+..+||.|++..|...++.|++ |.+.||||||++++|+|+| |+.|||||
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~-~a~~LhGqmsq~~Rlg~l~~Fk~--~~r~iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGF-QAIPLHGQMSQSKRLGALNKFKA--GARSILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCc-ceecccchhhHHHHHHHHHHHhc--cCCcEEEecchhcccCCCCCceEEEecC
Confidence 56666666 78889999999999887 89999999999999999999999 9999999999999999998 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
. |.+..+|+||+||+||.|.. |.++.+.+.
T Consensus 377 i---------P~~skDYIHRvGRtaRaGrs---G~~ItlVtq 406 (476)
T KOG0330|consen 377 I---------PTHSKDYIHRVGRTARAGRS---GKAITLVTQ 406 (476)
T ss_pred C---------CCcHHHHHHHcccccccCCC---cceEEEEeh
Confidence 9 67999999999999999987 887766543
No 8
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.1e-41 Score=366.82 Aligned_cols=368 Identities=17% Similarity=0.147 Sum_probs=271.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC----CCEEEEcchHHHHHHHHHHHH-hCC----CceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS----SSGIYCGPLRLLAWEVAKRLN-KAN----VSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~----~~~i~l~P~r~La~q~~~~l~-~~g----~~~~~~~g~~~~~~~~~~~iv 146 (508)
+++++++.||||||||+++++++++. +++++++|||++|.|++++++ .+| ..++..++.+.....+..+++
T Consensus 19 ~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~v 98 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEV 98 (812)
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEEE
Confidence 57899999999999999999888753 478999999999999999996 344 445555555544455678999
Q ss_pred Ecceecc-------ccCCccEEEEccccccCCC-CcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-------
Q 010534 147 VTVEMAD-------VVSDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD------- 211 (508)
Q Consensus 147 ~T~e~~~-------~l~~~~~iViDEah~~~~~-~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~------- 211 (508)
+|+..+. .+.++++|||||+|++.-. +....+...++......++++.++++.+.. .+....+.
T Consensus 99 ~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l~~~~~~~~~I~~~ 177 (812)
T PRK11664 99 VTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RLQQLLPDAPVIVSE 177 (812)
T ss_pred EChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HHHHhcCCCCEEEec
Confidence 9995542 3589999999999996432 111222222222223345555555555421 22333322
Q ss_pred --cEEEEeeeecCCCCCCC-----CccccccccCCCCEEEEe-eHHHHHHHHHHHHhc--CCCeEEEEcCCCCHHHHHHH
Q 010534 212 --DVKVQSYERLSPLVPLN-----VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQ 281 (508)
Q Consensus 212 --~~~v~~~~~~~~~~~~~-----~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~lhg~l~~~~R~~~ 281 (508)
.+++..++...+..... ..+..+.+...|+++||+ ++++++.+++.|++. ....+.++||++++++|.++
T Consensus 178 gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~ 257 (812)
T PRK11664 178 GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKA 257 (812)
T ss_pred CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHH
Confidence 22222222111111000 011222223468888888 899999999999872 23479999999999999999
Q ss_pred HHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCCCCCCCcEE
Q 010534 282 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (508)
Q Consensus 282 ~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~ 351 (508)
++.|.+ |+++||||||++|+||||| |++||+++..+ ||+. ...++|.+++.||+|||||.++ |.
T Consensus 258 ~~~~~~--G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~----G~ 331 (812)
T PRK11664 258 ILPAPA--GRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP----GI 331 (812)
T ss_pred hccccC--CCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC----cE
Confidence 999998 9999999999999999996 99999999876 7765 3578899999999999999976 99
Q ss_pred EEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhh
Q 010534 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID 431 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 431 (508)
||++++++ .+..+.....|+|.+.++.+.++.++.+. ..+.. .|.++++|+......+.+.|..++++.+
T Consensus 332 cyrL~t~~--~~~~l~~~~~PEI~r~dL~~~~L~l~~~g-------~~~~~-~~~~ld~P~~~~~~~A~~~L~~lgald~ 401 (812)
T PRK11664 332 CLHLYSKE--QAERAAAQSEPEILHSDLSGLLLELLQWG-------CHDPA-QLSWLDQPPAAALAAAKRLLQQLGALDG 401 (812)
T ss_pred EEEecCHH--HHhhCccCCCCceeccchHHHHHHHHHcC-------CCCHH-hCCCCCCCCHHHHHHHHHHHHHCCCCCC
Confidence 99999987 66778899999999999999999999744 22222 3667788887777888888999999888
Q ss_pred cCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 010534 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 464 (508)
Q Consensus 432 ~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 464 (508)
+..+|..++. ++..|+ +|.+..+++..+.
T Consensus 402 ~g~lT~~G~~-m~~lp~---~Prla~~ll~a~~ 430 (812)
T PRK11664 402 QGRLTARGRK-MAALGN---DPRLAAMLVAAKE 430 (812)
T ss_pred CCCcCHHHHH-HHhcCC---chHHHHHHHHHHh
Confidence 8889998877 899998 6888888876544
No 9
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.5e-41 Score=335.00 Aligned_cols=298 Identities=18% Similarity=0.187 Sum_probs=226.1
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH----HHHc---------CCCEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLES---------SSSGI 105 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~----~l~~---------~~~~i 105 (508)
.+++.....++.. +|..|+++|. .+|.+ +.+++++..+.||||||++|+. .+.+ ++.++
T Consensus 97 ~ls~~~~~~lk~~-----g~~~PtpIQaq~wp~~--l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 97 GLSEELMKALKEQ-----GFEKPTPIQAQGWPIA--LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred cccHHHHHHHHhc-----CCCCCchhhhccccee--ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 5778888899998 9999999999 99998 7799999999999999999743 3333 34679
Q ss_pred EEcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceec-c-------ccCCccEEEEcccc
Q 010534 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQ 167 (508)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~-------~l~~~~~iViDEah 167 (508)
+++|||+||.|+.+.+.++ ++.+.+++|+.... ..+..++++||..+ + .++++.++|+||||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 9999999999999999876 44566778875443 34678999999443 3 25899999999999
Q ss_pred ccCCCCcChHHHHHHhcccCCc-eEEEccCCcchHHHHHHhHc-CCcEEEEeeeec--CCCCC------------C----
Q 010534 168 MLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQVT-GDDVKVQSYERL--SPLVP------------L---- 227 (508)
Q Consensus 168 ~~~~~~rg~~~~~~ll~l~~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~--~~~~~------------~---- 227 (508)
.|.++.......+++-.+.... ..++.+++-...++.++... +....+..-... ..... +
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 9998855555777777774433 34444444444555555332 222222221110 00000 0
Q ss_pred CCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccc
Q 010534 228 NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (508)
Q Consensus 228 ~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gid 306 (508)
...+..+.....+++|||+ |++.|+++++.++..+. ++..+||+.++.+|..+++.|++ |+..||||||++++|+|
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLVATdVAaRGLD 406 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKSQSERDWVLKGFRE--GKSPVLVATDVAARGLD 406 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc-ceeeecccccHHHHHHHHHhccc--CCcceEEEcccccccCC
Confidence 0111111222456677776 99999999999998776 89999999999999999999999 99999999999999999
Q ss_pred cc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 307 ip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|| |++||++|+ |.+.++|+||+||+||.|.. |..+++...+
T Consensus 407 i~dV~lVInydf---------P~~vEdYVHRiGRTGRa~~~---G~A~tfft~~ 448 (519)
T KOG0331|consen 407 VPDVDLVINYDF---------PNNVEDYVHRIGRTGRAGKK---GTAITFFTSD 448 (519)
T ss_pred CccccEEEeCCC---------CCCHHHHHhhcCccccCCCC---ceEEEEEeHH
Confidence 96 999999999 66999999999999999987 8888877654
No 10
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-39 Score=356.78 Aligned_cols=325 Identities=23% Similarity=0.309 Sum_probs=247.5
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAW 115 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~ 115 (508)
+++.+.+.+.+. |+..|+++|. +++... ..++++++++|||||||++|..+ +..+++++|++|+++||.
T Consensus 8 lp~~~~~~l~~~-----g~~~l~p~Q~~ai~~~~-~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 8 LPEGVIEFYEAE-----GIEELYPPQAEAVEAGL-LDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred CCHHHHHHHHhC-----CCCcCCHHHHHHHHHHH-hCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 789999999998 9999999999 888732 56899999999999999997544 345789999999999999
Q ss_pred HHHHHHHhC---CCceeeecccccccc---CCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHH
Q 010534 116 EVAKRLNKA---NVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (508)
Q Consensus 116 q~~~~l~~~---g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ 181 (508)
|++++++++ |++++.++|+..... ....++|+|||.++ ++++++++|+||+|++.+..||..+...
T Consensus 82 q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 82 EKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHH
Confidence 999999865 889999999764432 35789999998764 3477999999999999988889887665
Q ss_pred Hhccc--CCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCC------------C---------CCccccccc-c
Q 010534 182 LLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP------------L---------NVPLGSFSN-I 237 (508)
Q Consensus 182 ll~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~------------~---------~~~l~~l~~-~ 237 (508)
+..+. ....++++.+++.+....+..|.+.... ....|+.++.. . ...+..+.+ .
T Consensus 162 l~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~-~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (737)
T PRK02362 162 LAKLRRLNPDLQVVALSATIGNADELADWLDAELV-DSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL 240 (737)
T ss_pred HHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcc-cCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH
Confidence 53332 3456788888888888888888764321 11111111100 0 001111111 1
Q ss_pred -CCCCEEEEe-eHHHHHHHHHHHHhcC-----------------------------------CCeEEEEcCCCCHHHHHH
Q 010534 238 -QTGDCIVTF-SRHAIYRLKKAIESRG-----------------------------------KHLCSIVYGSLPPETRTR 280 (508)
Q Consensus 238 -~~~~~iv~~-s~~~~~~l~~~L~~~~-----------------------------------~~~v~~lhg~l~~~~R~~ 280 (508)
..+.++||+ |++.++.+++.|.... ..++++|||+|++++|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 345666666 8999998888775431 126899999999999999
Q ss_pred HHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCc-ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 281 ~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~-~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+++.|++ |.++|||||+++++|+|+|...||..+..+||+. +..|.+..+|.||+|||||.|.+ ..|.++.+....
T Consensus 321 ve~~Fr~--G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d-~~G~~ii~~~~~ 397 (737)
T PRK02362 321 VEDAFRD--RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD-PYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHc--CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC-CCceEEEEecCc
Confidence 9999999 9999999999999999999888888888888875 45789999999999999999975 568887777553
Q ss_pred --H-HHHHhhhcCCCchhh
Q 010534 360 --L-PLLHKSLLEPSPMLE 375 (508)
Q Consensus 360 --~-~~~~~~~~~~~~~i~ 375 (508)
. +.+++++.....++.
T Consensus 398 ~~~~~~~~~~l~~~~~~i~ 416 (737)
T PRK02362 398 DELDELFERYIWADPEDVR 416 (737)
T ss_pred hhHHHHHHHHHhCCCCcee
Confidence 2 356677765554444
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-39 Score=336.18 Aligned_cols=296 Identities=16% Similarity=0.195 Sum_probs=217.5
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc--------------CCCE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES--------------SSSG 104 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~--------------~~~~ 104 (508)
.|++.+.+.+... ||..|+++|+ ++|.+ +++++++++||||||||++++.++.. +.++
T Consensus 14 ~l~~~l~~~l~~~-----g~~~pt~iQ~~aip~i--l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 14 ALHPQVVEALEKK-----GFHNCTPIQALALPLT--LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 3889999999998 9999999999 99998 66999999999999999998655421 2368
Q ss_pred EEEcchHHHHHHHHHHHHh----CCCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccc
Q 010534 105 IYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEI 166 (508)
Q Consensus 105 i~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEa 166 (508)
+|++|||+||.|+++.+.. .|+.+..++|+.... ..+..++|+||+.+. .+.+++++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 9999999999999888764 378888888764321 235689999996542 2578999999999
Q ss_pred cccCCCCcChH--HHHHHhcccC--CceEEEccCCcchHHHHHH-hHcCCcEEEEeeeecCC---C---------CCCCC
Q 010534 167 QMLGCKTRGFS--FTRALLGICA--NELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERLSP---L---------VPLNV 229 (508)
Q Consensus 167 h~~~~~~rg~~--~~~~ll~l~~--~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~~~~~~---~---------~~~~~ 229 (508)
|++.+. |+. ...++..++. ....++.+++.......+. ........+........ + .....
T Consensus 167 d~l~~~--~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 167 DRMFDL--GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHhhc--ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 999865 543 3334433432 2233444444333343333 22333222211100000 0 00000
Q ss_pred cc-ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc
Q 010534 230 PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (508)
Q Consensus 230 ~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi 307 (508)
.+ ..+.....+.++||+ +++.++.+++.|...+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVAQKKRLRILEEFTR--GDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCChhHHHHHHHHHHc--CCCcEEEEechhhcCCCc
Confidence 11 111222345566666 89999999999998876 89999999999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 308 p-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
| +++||+++. |.+..+|+||+|||||.|.. |.++.+..++
T Consensus 322 p~v~~VI~~d~---------P~s~~~yiqR~GR~gR~G~~---G~ai~~~~~~ 362 (423)
T PRK04837 322 PAVTHVFNYDL---------PDDCEDYVHRIGRTGRAGAS---GHSISLACEE 362 (423)
T ss_pred cccCEEEEeCC---------CCchhheEeccccccCCCCC---eeEEEEeCHH
Confidence 7 999999999 66999999999999999988 8888887654
No 12
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.2e-39 Score=348.84 Aligned_cols=324 Identities=23% Similarity=0.275 Sum_probs=244.1
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~ 115 (508)
+++.+.+.+... ++. ++++|. +++.+ .+++++++++|||||||+++..++ ..+++++|++|+++||.
T Consensus 8 l~~~~~~~~~~~-----~~~-l~~~Q~~ai~~l--~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 8 YDDEFLNLFTGN-----DFE-LYDHQRMAIEQL--RKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred CCHHHHHHHhhC-----CCC-CCHHHHHHHHHH--hcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 788899998887 776 999999 99987 568999999999999999976554 34678999999999999
Q ss_pred HHHHHHHh---CCCceeeeccccccc---cCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHHH
Q 010534 116 EVAKRLNK---ANVSCDLITGQEREE---VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (508)
Q Consensus 116 q~~~~l~~---~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~~ 181 (508)
|+++.+.+ .|..+...+|+.... .....++++|++.++. +++++++|+||+|++.+..||..+...
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~l 159 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETV 159 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHH
Confidence 99998874 488888888875432 2367899999976542 578999999999999988889887665
Q ss_pred Hhcc--cCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCC------------CC---Ccc-ccccc--cCCCC
Q 010534 182 LLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP------------LN---VPL-GSFSN--IQTGD 241 (508)
Q Consensus 182 ll~l--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~------------~~---~~l-~~l~~--~~~~~ 241 (508)
+..+ .....++++.+++.+...++..|.+.... ....+..++.. .. ..+ ..+.+ ...++
T Consensus 160 l~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~-~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (674)
T PRK01172 160 LSSARYVNPDARILALSATVSNANELAQWLNASLI-KSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQ 238 (674)
T ss_pred HHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCcc-CCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCc
Confidence 4332 23456777877888777778877654321 11112222110 00 001 11111 13456
Q ss_pred EEEEe-eHHHHHHHHHHHHhcC------------------------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEE
Q 010534 242 CIVTF-SRHAIYRLKKAIESRG------------------------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296 (508)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~------------------------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilV 296 (508)
++||+ |++.++.+++.|.+.. ..++.++||+|++++|..+++.|++ |.++|||
T Consensus 239 vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~VLv 316 (674)
T PRK01172 239 VLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIKVIV 316 (674)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 66666 8999999998886531 1258899999999999999999999 9999999
Q ss_pred ecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC-CCcEEEEEecCCCHHHHHhhhcCCCchhh
Q 010534 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375 (508)
Q Consensus 297 aT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~i~ 375 (508)
||+++++|+|+|...||+.+.++|++...+|++..+|.||+|||||.|.+ .+.|++++...++.+.+++++...+.++.
T Consensus 317 aT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~ 396 (674)
T PRK01172 317 ATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVI 396 (674)
T ss_pred ecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCcee
Confidence 99999999999988999999999988877899999999999999999964 23345554444445677888865555444
No 13
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-41 Score=325.31 Aligned_cols=402 Identities=19% Similarity=0.195 Sum_probs=306.8
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHc----CCC-EEEEcchHHHHHHHHHHHH-hCCCceeeeccccccccC----CCcE
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLES----SSS-GIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREEVD----GAKH 144 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~----~~~-~i~l~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~----~~~~ 144 (508)
.+|+.++++|+||||||++++|+..+ ..+ +.+.+|+|..|.+++.|++ ++.+..|.-.|+..+..+ ++-.
T Consensus 60 ~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~L 139 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLL 139 (699)
T ss_pred hcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHH
Confidence 47999999999999999999888754 234 4455999999999999998 567777766676655544 2334
Q ss_pred EEEcceec-------cccCCccEEEEccccccCCCCcChHHHHHHhcccCC------ceEEEccCCcc--hHHHHHHh--
Q 010534 145 RAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAV--PLIQQILQ-- 207 (508)
Q Consensus 145 iv~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~------~~~~~~~~~~~--~~~~~l~~-- 207 (508)
-+||..|+ ..+.+|++||+||||+++-. +++|+|+.+. .++++-++++. +-.+.+..
T Consensus 140 ky~tDgmLlrEams~p~l~~y~viiLDeahERtlA------TDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~ 213 (699)
T KOG0925|consen 140 KYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA------TDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNA 213 (699)
T ss_pred HHhcchHHHHHHhhCcccccccEEEechhhhhhHH------HHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCC
Confidence 57787665 35799999999999999765 8888887643 34444443332 33333332
Q ss_pred ----HcCCcEEEEeeeecCCCCCC-CCccccc----cccCCCCEEEEe-eHHHHHHHHHHHHhc--------CCCeEEEE
Q 010534 208 ----VTGDDVKVQSYERLSPLVPL-NVPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIESR--------GKHLCSIV 269 (508)
Q Consensus 208 ----~~~~~~~v~~~~~~~~~~~~-~~~l~~l----~~~~~~~~iv~~-s~~~~~~l~~~L~~~--------~~~~v~~l 269 (508)
.+| ..++..++...+.... +..+..+ ....+|++++|. +.++++..++.+... |..+|.++
T Consensus 214 Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PL 292 (699)
T KOG0925|consen 214 PLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPL 292 (699)
T ss_pred CeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEec
Confidence 223 4555555544443322 2222222 233699999999 688899888888642 45679999
Q ss_pred cCCCCHHHHHHHHHHhcC------CCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhH
Q 010534 270 YGSLPPETRTRQATRFND------ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEV 333 (508)
Q Consensus 270 hg~l~~~~R~~~~~~f~~------~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~ 333 (508)
| |.+ +.+.|+. +...++|+|+|++++.+++++ |.+||+.|..+ |+|+ -..|+|+++.
T Consensus 293 y----P~~---qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA 365 (699)
T KOG0925|consen 293 Y----PAQ---QQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASA 365 (699)
T ss_pred C----chh---hccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHH
Confidence 9 432 3333443 223479999999999999996 99999998876 8886 3689999999
Q ss_pred HhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCC
Q 010534 334 KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413 (508)
Q Consensus 334 ~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (508)
.||+|||||+.+ |.|+++|+++ .+-.++...+.|++.++++...++++|+ .++.++.. |.++++|.+
T Consensus 366 ~qR~gragrt~p----GkcfrLYte~-~~~~em~~~typeilrsNL~s~VL~LKk-------lgI~dlvh-fdfmDpPAP 432 (699)
T KOG0925|consen 366 QQRAGRAGRTRP----GKCFRLYTEE-AFEKEMQPQTYPEILRSNLSSTVLQLKK-------LGIDDLVH-FDFMDPPAP 432 (699)
T ss_pred HHHhhhccCCCC----CceEEeecHH-hhhhcCCCCCcHHHHHHhhHHHHHHHHh-------cCcccccC-CcCCCCCCh
Confidence 999999999998 8999999987 2334588899999999999999999997 88888886 999999999
Q ss_pred CccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhccCCC-CCCCCc--HH
Q 010534 414 NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGT-LQVPKT--QA 490 (508)
Q Consensus 414 ~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~ 490 (508)
+..+.+++++..|+++.++.+++..+.+ ++..|+ ||++.++++...+..|.++.+++.+++..|. +--|.. ..
T Consensus 433 EtLMrALE~LnYLaaLdDdGnLT~lG~i-mSEFPL---dPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~k 508 (699)
T KOG0925|consen 433 ETLMRALEVLNYLAALDDDGNLTSLGEI-MSEFPL---DPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASK 508 (699)
T ss_pred HHHHHHHHHhhhhhhhCCCcccchhhhh-hhcCCC---ChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHH
Confidence 9999999999999999999999999977 999999 7999999999999999999999988877555 333333 34
Q ss_pred HHHHHHHHhhHhhhccc
Q 010534 491 ALRELESIHKVGLFDFL 507 (508)
Q Consensus 491 ~l~~le~~~~~~~~~~~ 507 (508)
+.++....+.+.+.|||
T Consensus 509 aAdeak~~faH~dGDHl 525 (699)
T KOG0925|consen 509 AADEAKETFAHIDGDHL 525 (699)
T ss_pred HHHHHHHHhccCCcchH
Confidence 44444467888888875
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3e-39 Score=336.43 Aligned_cols=297 Identities=21% Similarity=0.166 Sum_probs=222.6
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----C---CCEEEEcchHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S---SSGIYCGPLRL 112 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----~---~~~i~l~P~r~ 112 (508)
+++.+.+.+... ||..++++|+ ++|.+ +++++++++||||||||++++.++.+ . .+++|++|||+
T Consensus 11 l~~~l~~~l~~~-----g~~~~t~iQ~~ai~~~--l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 11 LPPALLANLNEL-----GYTEMTPIQAQSLPAI--LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 788999999999 9999999999 99998 56999999999999999997655543 1 26799999999
Q ss_pred HHHHHHHHHHhC-----CCceeeecccccc------ccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCC
Q 010534 113 LAWEVAKRLNKA-----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 113 La~q~~~~l~~~-----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (508)
||.|+++.++.+ ++.+..++|+... ...+..++|+||+.+. .+.+++++|+||||++.+..
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 999999988753 5677777876533 1246789999996653 24789999999999998763
Q ss_pred cChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc-CCcEEEEeeeec-----------CCCCCCCCcc-ccccccCCC
Q 010534 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERL-----------SPLVPLNVPL-GSFSNIQTG 240 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~-----------~~~~~~~~~l-~~l~~~~~~ 240 (508)
++..+..++-.++.....++.+++..+.+..+.... .....+...... .+.......+ ..+....++
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 243 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPE 243 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 333345555455544444444544444555555432 222222211100 0000001111 112233455
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~ 318 (508)
.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLVaTdv~~rGiDi~~v~~VI~~d~- 319 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGF-SALALHGDLEQRDRDQVLVRFAN--RSCSVLVATDVAARGLDIKALEAVINYEL- 319 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEecccccccchhcCCeEEEecC-
Confidence 566666 89999999999998877 89999999999999999999999 9999999999999999997 999999999
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|.+..+|+||+|||||.|.. |.++.+...+
T Consensus 320 --------p~~~~~yiqR~GRtGR~g~~---G~ai~l~~~~ 349 (460)
T PRK11776 320 --------ARDPEVHVHRIGRTGRAGSK---GLALSLVAPE 349 (460)
T ss_pred --------CCCHhHhhhhcccccCCCCc---ceEEEEEchh
Confidence 66999999999999999987 8888777654
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.3e-39 Score=332.24 Aligned_cols=298 Identities=17% Similarity=0.175 Sum_probs=218.1
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----C---------CCEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S---------SSGI 105 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----~---------~~~i 105 (508)
.|++.+.+.+.+. +|..|+++|. ++|.+ ++++++++++|||||||++++.++++ . .+++
T Consensus 7 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~i--l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 7 GLSPDILRAVAEQ-----GYREPTPIQQQAIPAV--LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 3789999999999 9999999999 99998 56899999999999999997555431 1 2589
Q ss_pred EEcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEcccc
Q 010534 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQ 167 (508)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah 167 (508)
|++|||+||.|+.+.+..+ ++.+..++|+.... ..+..++|+||+.+. .+++++++||||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 9999999999999998854 56666677764322 235689999996652 35889999999999
Q ss_pred ccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc-CCcEEEEeeeecCCCCC------------CCCccccc
Q 010534 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLSPLVP------------LNVPLGSF 234 (508)
Q Consensus 168 ~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~~~~~------------~~~~l~~l 234 (508)
++.+..+...+..++-.++.....++.+++..+.+..+.... .....+....+...... ....+..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHH
Confidence 998653333344545445544444444444444445555433 22222221111111000 00111111
Q ss_pred -cccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccE
Q 010534 235 -SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (508)
Q Consensus 235 -~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~ 311 (508)
.......++||+ ++..++.+++.|...+. .+..+||++++++|.++++.|++ |+.+|||||+++++|||+| +++
T Consensus 240 ~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTdv~~rGiDip~v~~ 316 (456)
T PRK10590 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNKSQGARTRALADFKS--GDIRVLVATDIAARGLDIEELPH 316 (456)
T ss_pred HHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEccHHhcCCCcccCCE
Confidence 122334566666 89999999999988876 89999999999999999999999 9999999999999999997 999
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
||+++. |.+..+|+||+|||||.|.. |.++.+...+
T Consensus 317 VI~~~~---------P~~~~~yvqR~GRaGR~g~~---G~ai~l~~~~ 352 (456)
T PRK10590 317 VVNYEL---------PNVPEDYVHRIGRTGRAAAT---GEALSLVCVD 352 (456)
T ss_pred EEEeCC---------CCCHHHhhhhccccccCCCC---eeEEEEecHH
Confidence 999999 66999999999999999987 7776665433
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=8.3e-39 Score=336.80 Aligned_cols=298 Identities=18% Similarity=0.167 Sum_probs=215.7
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c--------CCCEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------SSSGIY 106 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~--------~~~~i~ 106 (508)
.+++.+.+.+... +|..|+++|. ++|.+ +.++++++++|||||||++++.+++ . +..+||
T Consensus 136 ~l~~~l~~~l~~~-----g~~~pt~iQ~~aip~~--l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 136 SFPDYILKSLKNA-----GFTEPTPIQVQGWPIA--LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 4788999999998 9999999999 99998 6699999999999999999754332 1 235799
Q ss_pred EcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceec--------cccCCccEEEEccccc
Q 010534 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQM 168 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~--------~~l~~~~~iViDEah~ 168 (508)
++|||+||.|+.+.+.++ ++.+..++|+.... ..+..++|+||+.+ ..+.++++|||||||+
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR 288 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh
Confidence 999999999999998875 45666667654321 23568999999544 2357899999999999
Q ss_pred cCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcC--CcEEEEeee-ecCCCC------------CCCCcc-c
Q 010534 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG--DDVKVQSYE-RLSPLV------------PLNVPL-G 232 (508)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~~-~~~~~~------------~~~~~l-~ 232 (508)
+.+......+..++..+......++.+++....+..+....- ....+..-. ...... .+...+ .
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ 368 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKM 368 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHH
Confidence 997633333444544444443334444333333444433221 111111100 000000 000011 1
Q ss_pred ccccc--CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-
Q 010534 233 SFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (508)
Q Consensus 233 ~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip- 308 (508)
.+... ..+.+|||+ +++.++.+++.|+..+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+|
T Consensus 369 ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTdv~~rGIDi~~ 445 (545)
T PTZ00110 369 LLQRIMRDGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDKKQEERTWVLNEFKT--GKSPIMIATDVASRGLDVKD 445 (545)
T ss_pred HHHHhcccCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCCcHHHHHHHHHHHhc--CCCcEEEEcchhhcCCCccc
Confidence 11111 344566666 89999999999988776 88999999999999999999999 9999999999999999996
Q ss_pred ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 309 v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|++||+++. |.+..+|+||+||+||.|.. |.++.+...+
T Consensus 446 v~~VI~~d~---------P~s~~~yvqRiGRtGR~G~~---G~ai~~~~~~ 484 (545)
T PTZ00110 446 VKYVINFDF---------PNQIEDYVHRIGRTGRAGAK---GASYTFLTPD 484 (545)
T ss_pred CCEEEEeCC---------CCCHHHHHHHhcccccCCCC---ceEEEEECcc
Confidence 999999999 66999999999999999987 8888887655
No 17
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=3.4e-39 Score=354.96 Aligned_cols=378 Identities=16% Similarity=0.129 Sum_probs=270.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC-----CEEEEcchHHHHHHHHHHHHh-C----CCceeeeccccccccCCCcEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLNK-A----NVSCDLITGQEREEVDGAKHR 145 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~-----~~i~l~P~r~La~q~~~~l~~-~----g~~~~~~~g~~~~~~~~~~~i 145 (508)
++++++++|+||||||++.++.+.+.+ .+++.+|+|..|.+++.++++ + |..++.-+..+.....++.++
T Consensus 88 ~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~s~~t~I~ 167 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK 167 (1294)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccccCCCCCEE
Confidence 588999999999999999998887643 234458988888888877763 3 434443333333334578899
Q ss_pred EEcceec-------cccCCccEEEEcccccc-CCCCcChHHH--HHHhcccCCceEEEccCCcchHHHHHHhHcC-----
Q 010534 146 AVTVEMA-------DVVSDYDCAVIDEIQML-GCKTRGFSFT--RALLGICANELHLCGDPAAVPLIQQILQVTG----- 210 (508)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~-~~~~rg~~~~--~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~----- 210 (508)
++|+.++ ..++++++|||||||++ .+. ++... ..++... ...+++..+++.+. ..+....+
T Consensus 168 v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~--DfLLg~Lk~lL~~r-pdlKvILmSATid~-e~fs~~F~~apvI 243 (1294)
T PRK11131 168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI--DFILGYLKELLPRR-PDLKVIITSATIDP-ERFSRHFNNAPII 243 (1294)
T ss_pred EEChHHHHHHHhcCCccccCcEEEecCcccccccc--chHHHHHHHhhhcC-CCceEEEeeCCCCH-HHHHHHcCCCCEE
Confidence 9999554 24699999999999975 332 44322 1121111 23444444455542 33444332
Q ss_pred ----CcEEEEeeeecCCCCCC---CCcc-------ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCC--CeEEEEcCCC
Q 010534 211 ----DDVKVQSYERLSPLVPL---NVPL-------GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSL 273 (508)
Q Consensus 211 ----~~~~v~~~~~~~~~~~~---~~~l-------~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lhg~l 273 (508)
..+++..++........ ...+ ..+....+|+++||+ ++.+++.+++.|++.+. ..+.++||++
T Consensus 244 ~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~L 323 (1294)
T PRK11131 244 EVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARL 323 (1294)
T ss_pred EEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCC
Confidence 22333333322211100 0111 111223568888888 89999999999988654 2478999999
Q ss_pred CHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCC
Q 010534 274 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRY 343 (508)
Q Consensus 274 ~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~ 343 (508)
++++|..+++. . |.++||||||++|+||||| |++||++|..+ ||+. ...|+|.++|.||+|||||.
T Consensus 324 s~~eQ~~Vf~~--~--g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 324 SNSEQNRVFQS--H--SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CHHHHHHHhcc--c--CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 99988877654 3 7789999999999999996 99999998654 6654 24578999999999999999
Q ss_pred CCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHH
Q 010534 344 GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEV 423 (508)
Q Consensus 344 g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 423 (508)
++ |.||++++++ .+..+.+...|+|.+.++...+++++. .++.++.. |.++++|+......+++.|
T Consensus 400 ~~----G~c~rLyte~--d~~~~~~~~~PEIlR~~L~~viL~lk~-------lgl~di~~-F~fldpP~~~~i~~al~~L 465 (1294)
T PRK11131 400 SE----GICIRLYSED--DFLSRPEFTDPEILRTNLASVILQMTA-------LGLGDIAA-FPFVEAPDKRNIQDGVRLL 465 (1294)
T ss_pred CC----cEEEEeCCHH--HHHhhhcccCCccccCCHHHHHHHHHH-------cCCCCcce-eeCCCCCCHHHHHHHHHHH
Confidence 76 9999999876 667788899999999999999999997 45555444 7778888888888888899
Q ss_pred HHHHHhhhc-----CCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhcc
Q 010534 424 LKVATVIDQ-----LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479 (508)
Q Consensus 424 ~~l~~~~~~-----~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 479 (508)
..++++... ..+|..++. ++..|+ +|.+.++++..+..-|..+.+.+..++.
T Consensus 466 ~~LgAld~~~~~~~~~LT~lG~~-la~LPl---dPrlakmLl~a~~~~c~~evl~IaA~Ls 522 (1294)
T PRK11131 466 EELGAITTDEQASAYKLTPLGRQ-LAQLPV---DPRLARMVLEAQKHGCVREVMIITSALS 522 (1294)
T ss_pred HHCCCCCccccCCCccCcHHHHH-HHhCCC---ChHHHHHHHHhhhcCCHHHHHHHHHHHc
Confidence 999988643 348888877 999999 7889999998888778888777765554
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-38 Score=334.13 Aligned_cols=296 Identities=19% Similarity=0.184 Sum_probs=214.3
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH--------------cCCCE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE--------------SSSSG 104 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~--------------~~~~~ 104 (508)
.+++.+.+.+... ||..|+++|. ++|.+ ++++++++++|||||||++|+.++. .+..+
T Consensus 127 ~l~~~l~~~L~~~-----g~~~ptpiQ~~aip~i--l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 127 GLPPKLLLNLETA-----GYEFPTPIQMQAIPAA--LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 4788999999988 9999999999 99998 5699999999999999999865543 12468
Q ss_pred EEEcchHHHHHHHHHHHHhC----CCceeeecccccc------ccCCCcEEEEcceecc--------ccCCccEEEEccc
Q 010534 105 IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEI 166 (508)
Q Consensus 105 i~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEa 166 (508)
+|++|||+||.|+.+.++.+ ++.+..+.|+... ...+..++|+||+.+. .+.+++++|||||
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEV 279 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecH
Confidence 99999999999999888754 4555555655421 2235789999996642 2588999999999
Q ss_pred cccCCCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCC-CC------------CCCCcc
Q 010534 167 QMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSP-LV------------PLNVPL 231 (508)
Q Consensus 167 h~~~~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~-~~------------~~~~~l 231 (508)
|.+.+. |+. ...++..++.. ..++.+++..+.+..+.................. .. .....+
T Consensus 280 d~ml~~--gf~~~i~~i~~~l~~~-q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l 356 (518)
T PLN00206 280 DCMLER--GFRDQVMQIFQALSQP-QVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKL 356 (518)
T ss_pred HHHhhc--chHHHHHHHHHhCCCC-cEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHH
Confidence 999865 554 33333334332 2333333333445555554433222221111100 00 000011
Q ss_pred -cccccc--CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc
Q 010534 232 -GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (508)
Q Consensus 232 -~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi 307 (508)
..+... ..+.++||+ ++..++.+++.|.......+..+||++++++|..+++.|++ |+.+|||||+++++|||+
T Consensus 357 ~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILVaTdvl~rGiDi 434 (518)
T PLN00206 357 FDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPVIVATGVLGRGVDL 434 (518)
T ss_pred HHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEEecHhhccCCc
Confidence 111111 123455555 89999999999987545589999999999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 308 p-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
| +++||+++. |.+..+|+||+|||||.|.. |.++.+...+
T Consensus 435 p~v~~VI~~d~---------P~s~~~yihRiGRaGR~g~~---G~ai~f~~~~ 475 (518)
T PLN00206 435 LRVRQVIIFDM---------PNTIKEYIHQIGRASRMGEK---GTAIVFVNEE 475 (518)
T ss_pred ccCCEEEEeCC---------CCCHHHHHHhccccccCCCC---eEEEEEEchh
Confidence 6 999999999 66999999999999999987 8888777654
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.5e-39 Score=337.82 Aligned_cols=295 Identities=18% Similarity=0.237 Sum_probs=214.6
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc--------------CCCEE
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES--------------SSSGI 105 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~--------------~~~~i 105 (508)
|++.+.+.+.+. ||..++++|+ ++|.+ ++++++++.+|||||||++|+.++++ ..++|
T Consensus 16 l~~~l~~~L~~~-----g~~~ptpiQ~~~ip~~--l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 16 LHPALLAGLESA-----GFTRCTPIQALTLPVA--LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 889999999998 9999999999 99998 67999999999999999998655432 24789
Q ss_pred EEcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc---------ccCCccEEEEccc
Q 010534 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEI 166 (508)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~---------~l~~~~~iViDEa 166 (508)
|++||++|+.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+. .+..++++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999998864 67788888865332 234679999995542 2467899999999
Q ss_pred cccCCCCcChH--HHHHHhcccC--CceEEEccCCcchHHHHHH-hHcCCcEEEEee-eecCCC-----------CCCCC
Q 010534 167 QMLGCKTRGFS--FTRALLGICA--NELHLCGDPAAVPLIQQIL-QVTGDDVKVQSY-ERLSPL-----------VPLNV 229 (508)
Q Consensus 167 h~~~~~~rg~~--~~~~ll~l~~--~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~-~~~~~~-----------~~~~~ 229 (508)
|++.+. |+. ...++..++. ....++.+++....+..+. ........+... ...... ..+..
T Consensus 169 h~lld~--gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDL--GFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhc--chHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH
Confidence 999865 543 3333333432 2223333333333333332 222222111110 000000 00001
Q ss_pred cc-ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc
Q 010534 230 PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (508)
Q Consensus 230 ~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi 307 (508)
.+ ..+.......+|||+ |++.++.+++.|.+.+. .+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+
T Consensus 247 ~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 247 LLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVPQKKRESLLNRFQK--GQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEehhhhcCCCc
Confidence 11 112222344566666 89999999999998876 89999999999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 308 p-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
| +++||+++. |.+..+|+||+|||||.|.. |.++.+..++
T Consensus 324 p~V~~VInyd~---------P~s~~~yvqRiGRaGR~G~~---G~ai~~~~~~ 364 (572)
T PRK04537 324 DGVKYVYNYDL---------PFDAEDYVHRIGRTARLGEE---GDAISFACER 364 (572)
T ss_pred cCCCEEEEcCC---------CCCHHHHhhhhcccccCCCC---ceEEEEecHH
Confidence 7 999999999 66999999999999999987 8887776554
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-38 Score=332.00 Aligned_cols=294 Identities=23% Similarity=0.290 Sum_probs=224.2
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc------CC--C-EEEEcch
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------SS--S-GIYCGPL 110 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~------~~--~-~i~l~P~ 110 (508)
+++.+.+.+.+. ||..|+++|. ++|.+ +.++++++.++||||||.++..++++ .. . +++++||
T Consensus 36 l~~~ll~~l~~~-----gf~~pt~IQ~~~IP~~--l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDL-----GFEEPTPIQLAAIPLI--LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 789999999998 9999999999 99999 66999999999999999997544432 11 2 8999999
Q ss_pred HHHHHHHHHHHHhC-----CCceeeeccccccc------cCCCcEEEEcce-eccc-------cCCccEEEEccccccCC
Q 010534 111 RLLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVE-MADV-------VSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 111 r~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e-~~~~-------l~~~~~iViDEah~~~~ 171 (508)
|+||.|+++.+.++ ++.+..++|+.... ..+..++|+||. .+++ +.++.++|+|||++|.+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 99999999998853 46677888875332 125889999994 3332 48899999999999998
Q ss_pred CCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHc-CCcEEEEeeeecC--CCC------------C-CCCcccc
Q 010534 172 KTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS--PLV------------P-LNVPLGS 233 (508)
Q Consensus 172 ~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~--~~~------------~-~~~~l~~ 233 (508)
+ ||. ...++-.++.....++.+++..+.+..+.... .+...+....... ... . +...+..
T Consensus 189 ~--Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 189 M--GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred C--CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 7 665 44555556665556666655555555555332 2222221110000 000 0 1111111
Q ss_pred -ccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-cc
Q 010534 234 -FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (508)
Q Consensus 234 -l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~ 310 (508)
+.....+.+|||+ |+..++.++..|...+. ++..+||++++++|.++++.|++ |+.+||||||++++||||| ++
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLPQEERDRALEKFKD--GELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCCHHHHHHHHHHHHc--CCCCEEEEechhhccCCccccc
Confidence 2223444577777 89999999999999986 99999999999999999999999 9999999999999999997 99
Q ss_pred EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 311 ~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+||+||. |.+...|+||+||+||.|.. |..+.+..+
T Consensus 344 ~VinyD~---------p~~~e~yvHRiGRTgRaG~~---G~ai~fv~~ 379 (513)
T COG0513 344 HVINYDL---------PLDPEDYVHRIGRTGRAGRK---GVAISFVTE 379 (513)
T ss_pred eeEEccC---------CCCHHHheeccCccccCCCC---CeEEEEeCc
Confidence 9999999 66999999999999999988 888887764
No 21
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-38 Score=327.78 Aligned_cols=298 Identities=20% Similarity=0.220 Sum_probs=214.0
Q ss_pred ccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH-HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 55 KKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 55 ~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~-~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
..+|+..|++.|. +++.+ ++++++++++|||||||+++ +..+...+.++|++|+++|+.|+.+++...|+++..+.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~--l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~ 82 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAV--LLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLN 82 (470)
T ss_pred hhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3479999999999 99998 56889999999999999997 44556678899999999999999999999999998888
Q ss_pred cccccc----------cCCCcEEEEcceecc----------ccCCccEEEEccccccCCCCcChHHHHH------Hhc-c
Q 010534 133 GQEREE----------VDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQMLGCKTRGFSFTRA------LLG-I 185 (508)
Q Consensus 133 g~~~~~----------~~~~~~iv~T~e~~~----------~l~~~~~iViDEah~~~~~~rg~~~~~~------ll~-l 185 (508)
|..... .....++++||+.+. ...+++++||||||+++ +||+.+... +.. +
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~--~~g~~fr~~~~~l~~l~~~~ 160 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS--QWGHDFRPDYKALGSLKQKF 160 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC--ccccccHHHHHHHHHHHHHc
Confidence 764322 224678999997642 23689999999999998 457543322 222 2
Q ss_pred cCCceEEEccCCcchHHHHHHhHcCC---cEEEEeeeecCC------C--CCCCCcccccccc-CCCCEEEEe-eHHHHH
Q 010534 186 CANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSP------L--VPLNVPLGSFSNI-QTGDCIVTF-SRHAIY 252 (508)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~v~~~~~~~~------~--~~~~~~l~~l~~~-~~~~~iv~~-s~~~~~ 252 (508)
+...+..+.++.+......+....+- ......+.+..- . ......+..+.+. .....|||+ |++.++
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 22222222222222333444444332 111111111100 0 0000011122212 233424444 999999
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChh
Q 010534 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 331 (508)
Q Consensus 253 ~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~ 331 (508)
.+++.|++.+. .+..+||+|++++|..+++.|++ |+.+|||||+++++|||+| |++||+++. |.|..
T Consensus 241 ~la~~L~~~g~-~~~~~H~~l~~~eR~~i~~~F~~--g~~~vLVaT~~~~~GID~p~V~~VI~~~~---------P~s~~ 308 (470)
T TIGR00614 241 QVTASLQNLGI-AAGAYHAGLEISARDDVHHKFQR--DEIQVVVATVAFGMGINKPDVRFVIHYSL---------PKSME 308 (470)
T ss_pred HHHHHHHhcCC-CeeEeeCCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCCcccceEEEEeCC---------CCCHH
Confidence 99999998876 89999999999999999999999 9999999999999999997 999999999 55999
Q ss_pred hHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhcCCC
Q 010534 332 EVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPS 371 (508)
Q Consensus 332 ~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~~~~ 371 (508)
+|+||+|||||.|.. |.|+.++.. +...++.++....
T Consensus 309 ~y~Qr~GRaGR~G~~---~~~~~~~~~~d~~~~~~~~~~~~ 346 (470)
T TIGR00614 309 SYYQESGRAGRDGLP---SECHLFYAPADINRLRRLLMEEP 346 (470)
T ss_pred HHHhhhcCcCCCCCC---ceEEEEechhHHHHHHHHHhcCC
Confidence 999999999999987 888777654 4456666665433
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-38 Score=325.87 Aligned_cols=297 Identities=19% Similarity=0.179 Sum_probs=215.7
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c-------CCCEEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-------SSSGIYC 107 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~-------~~~~i~l 107 (508)
.+++.+.+.+.+. ||..|+++|+ ++|.+ ++++++++++|||||||++++.+++ . ..+++|+
T Consensus 7 ~l~~~l~~~l~~~-----g~~~p~~iQ~~ai~~~--~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil 79 (434)
T PRK11192 7 ELDESLLEALQDK-----GYTRPTAIQAEAIPPA--LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILIL 79 (434)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 3788999999999 9999999999 99998 5689999999999999999754432 1 2468999
Q ss_pred cchHHHHHHHHHHHHh----CCCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEcccccc
Q 010534 108 GPLRLLAWEVAKRLNK----ANVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQML 169 (508)
Q Consensus 108 ~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~ 169 (508)
+||++||.|+++.+.. .++.+..++|+.... ..+..++|+||+.+. .+..+++|||||||++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 9999999999988774 377888888865321 235679999996542 2478999999999999
Q ss_pred CCCCcChHHHHHHhcccCCceEEEccCCcc-hHHHHHHhHcCC-cEEEEeeeecC------------C-CCCCCCccccc
Q 010534 170 GCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVTGD-DVKVQSYERLS------------P-LVPLNVPLGSF 234 (508)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~v~~~~~~~------------~-~~~~~~~l~~l 234 (508)
.+..++..+..+...+......+..+++.. ..+..+...... ...+....... . .......+..+
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 866333334444433433322333332222 345555544332 22221110000 0 00001111112
Q ss_pred c-ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccE
Q 010534 235 S-NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (508)
Q Consensus 235 ~-~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~ 311 (508)
. ....+..+||+ +++.++.+++.|+..+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++
T Consensus 240 ~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~~~~R~~~l~~f~~--G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 240 LKQPEVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMVQAKRNEAIKRLTD--GRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HhcCCCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHhC--CCCcEEEEccccccCccCCCCCE
Confidence 2 22345566666 89999999999998766 89999999999999999999999 9999999999999999996 999
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
||+++. |.+...|+||+|||||.|.. |.++.+...
T Consensus 317 VI~~d~---------p~s~~~yiqr~GR~gR~g~~---g~ai~l~~~ 351 (434)
T PRK11192 317 VINFDM---------PRSADTYLHRIGRTGRAGRK---GTAISLVEA 351 (434)
T ss_pred EEEECC---------CCCHHHHhhcccccccCCCC---ceEEEEecH
Confidence 999998 66999999999999999987 777666543
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.5e-38 Score=334.97 Aligned_cols=298 Identities=18% Similarity=0.176 Sum_probs=219.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.|++.+.+++.++ ||..|+++|+ ++|.+ ++++++++.||||||||+++..++++ .+++||++|||
T Consensus 12 ~L~~~ll~al~~~-----G~~~ptpiQ~~ai~~l--l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 12 GLKAPILEALNDL-----GYEKPSPIQAECIPHL--LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 3889999999999 9999999999 99998 56899999999999999997555432 24689999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (508)
+||.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+. .++++++|||||||++.+.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 9999999888753 67777777765322 235789999995542 2578999999999999865
Q ss_pred CcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc-CCcEEEEeeeecCCCC------------CCCCcc-ccccccC
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLSPLV------------PLNVPL-GSFSNIQ 238 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~~~~------------~~~~~l-~~l~~~~ 238 (508)
.....+..++-.++.....++.+++..+.+..+.... .+...+.......... .+...+ ..+....
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~ 244 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAED 244 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcC
Confidence 2222344555555555444555554444454444332 2222221110000000 001111 1122223
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
...+|||+ |+..+..+++.|...+. .+..+||+|++++|..+++.|++ |+.+|||||+++++|||+| |++||+++
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~-~~~~lhgd~~q~~R~~il~~Fr~--G~~~ILVATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGY-NSAALNGDMNQALREQTLERLKD--GRLDILIATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCC-CEEEeeCCCCHHHHHHHHHHHhC--CCCCEEEEcchHhcCCCcccCCEEEEeC
Confidence 34556655 89999999999998876 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
. |.+..+|+||+|||||.|.. |.++.+....
T Consensus 322 ~---------P~~~e~yvqRiGRtGRaGr~---G~ai~~v~~~ 352 (629)
T PRK11634 322 I---------PMDSESYVHRIGRTGRAGRA---GRALLFVENR 352 (629)
T ss_pred C---------CCCHHHHHHHhccccCCCCc---ceEEEEechH
Confidence 9 66999999999999999987 7877776543
No 24
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-39 Score=308.46 Aligned_cols=314 Identities=18% Similarity=0.196 Sum_probs=232.7
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-----C-----C--CEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-----S-----S--SGIY 106 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-----~-----~--~~i~ 106 (508)
.|++++++++... ||..+|++|. ++|.+ +++++|++.++||||||++++.++++ + + .+++
T Consensus 12 ~L~~~l~~~l~~~-----GF~~mTpVQa~tIPll--l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 12 PLSPWLLEALDES-----GFEKMTPVQAATIPLL--LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred CccHHHHHHHHhc-----CCcccCHHHHhhhHHH--hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 3789999999999 9999999999 99999 67999999999999999998666542 1 2 4699
Q ss_pred EcchHHHHHHHHHHHHhC-----CCceeeeccccccc-------cCCCcEEEEcceec----cc----c--CCccEEEEc
Q 010534 107 CGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMA----DV----V--SDYDCAVID 164 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~-----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~----~~----l--~~~~~iViD 164 (508)
+.|||+|+.|+.+.+..+ .+.|.+++|+.... ..+.+++|+||..+ .. + +.++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999888753 67788998874332 23678999999332 22 2 589999999
Q ss_pred cccccCCCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhH-cCCcEEEEeeeec---CCCCCC-----------
Q 010534 165 EIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYERL---SPLVPL----------- 227 (508)
Q Consensus 165 Eah~~~~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~~~~~---~~~~~~----------- 227 (508)
|||.+.+. ||. ...+|-.+++....=+.+++...-+.++... ....+.|..-... .|....
T Consensus 165 EADrLldm--gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 165 EADRLLDM--GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred chHhHhcc--cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 99999988 665 4455655666555445566655666665533 2223333222111 221111
Q ss_pred -CCccccccccCCCCEEEEe-eHHHHHHHHHHHHhc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccc
Q 010534 228 -NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304 (508)
Q Consensus 228 -~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~G 304 (508)
...+..+.+...+.++||| |...++.....+... +...+..+||.|++..|..+++.|.+ ..-.+|+|||++++|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~--~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK--LSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh--ccCceEEeehhhhcc
Confidence 0111233444567888888 889999988888776 55689999999999999999999998 666799999999999
Q ss_pred cccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcCC-Cchhhh
Q 010534 305 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP-SPMLES 376 (508)
Q Consensus 305 idip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~i~~ 376 (508)
+||| |++||++|+ |.+++.+.||+||+||.|.. |..+.+-.+....|-+++.-. .+++.+
T Consensus 321 lDip~iD~VvQ~Dp---------P~~~~~FvHR~GRTaR~gr~---G~Aivfl~p~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDP---------PKDPSSFVHRCGRTARAGRE---GNAIVFLNPREEAYVEFLRIKGKVELER 382 (567)
T ss_pred CCCCCceEEEecCC---------CCChhHHHhhcchhhhccCc---cceEEEecccHHHHHHHHHhcCccchhh
Confidence 9997 999999999 56999999999999999987 555444333444666665433 344443
No 25
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6e-39 Score=354.34 Aligned_cols=379 Identities=17% Similarity=0.137 Sum_probs=275.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC-----CEEEEcchHHHHHHHHHHHH-hCCCceeeeccccccc----cCCCcEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLN-KANVSCDLITGQEREE----VDGAKHR 145 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~-----~~i~l~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~----~~~~~~i 145 (508)
++++++|+|+||||||++.++.+.+.+ .+++.+|+|..|..++.+++ ++|.+++...|+..+. ..++.+.
T Consensus 81 ~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I~ 160 (1283)
T TIGR01967 81 ENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVK 160 (1283)
T ss_pred hCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCceee
Confidence 578999999999999999999987653 33445999999999999998 5688877777764332 3467789
Q ss_pred EEcceec-------cccCCccEEEEccccccCCCCcChHH--HHHHhcccCCceEEEccCCcchHHHHHHhHcC------
Q 010534 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSF--TRALLGICANELHLCGDPAAVPLIQQILQVTG------ 210 (508)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~--~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~------ 210 (508)
++|+.++ ..+.++++|||||||+++-. .++.+ ...++... ..++++.++++.+. ..+....+
T Consensus 161 ~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~-~D~LL~lLk~il~~r-pdLKlIlmSATld~-~~fa~~F~~apvI~ 237 (1283)
T TIGR01967 161 LMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN-IDFLLGYLKQLLPRR-PDLKIIITSATIDP-ERFSRHFNNAPIIE 237 (1283)
T ss_pred eccccHHHHHhhhCcccccCcEEEEcCcchhhcc-chhHHHHHHHHHhhC-CCCeEEEEeCCcCH-HHHHHHhcCCCEEE
Confidence 9999664 24689999999999975432 12221 22222222 23445555555542 33444333
Q ss_pred ---CcEEEEeeeecCCCCCCC---C-------ccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCC--CeEEEEcCCCC
Q 010534 211 ---DDVKVQSYERLSPLVPLN---V-------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLP 274 (508)
Q Consensus 211 ---~~~~v~~~~~~~~~~~~~---~-------~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lhg~l~ 274 (508)
..+++..++......... . .+..+....+|+++||+ ++.+++.+++.|++.+. ..+.++||+|+
T Consensus 238 V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls 317 (1283)
T TIGR01967 238 VSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLS 317 (1283)
T ss_pred ECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCC
Confidence 233333333222111000 0 11112223568899988 89999999999987643 36899999999
Q ss_pred HHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCCC
Q 010534 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYG 344 (508)
Q Consensus 275 ~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g 344 (508)
+++|.++ |+.. +..+||||||++|+||||| |++||++|..+ ||+. ...|+|.++|.||+|||||.+
T Consensus 318 ~~eQ~~v---f~~~-~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~ 393 (1283)
T TIGR01967 318 NKEQQRV---FQPH-SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA 393 (1283)
T ss_pred HHHHHHH---hCCC-CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC
Confidence 9988776 4441 3479999999999999996 99999999765 6664 346789999999999999999
Q ss_pred CCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHH
Q 010534 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVL 424 (508)
Q Consensus 345 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 424 (508)
+ |.||++++++ .+..+.+...|+|.+.++.+.+++++.+ ++.++.. |.++++|+......+++.|.
T Consensus 394 ~----G~cyRLyte~--~~~~~~~~~~PEIlR~~L~~viL~l~~l-------g~~di~~-f~fldpP~~~~i~~A~~~L~ 459 (1283)
T TIGR01967 394 P----GICIRLYSEE--DFNSRPEFTDPEILRTNLASVILQMLAL-------RLGDIAA-FPFIEAPDPRAIRDGFRLLE 459 (1283)
T ss_pred C----ceEEEecCHH--HHHhhhhccCcccccccHHHHHHHHHhc-------CCCCccc-ccCCCCCCHHHHHHHHHHHH
Confidence 6 9999999876 6667788899999999999999999873 3334333 67788888777788888899
Q ss_pred HHHHhhhcC---CCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhcc
Q 010534 425 KVATVIDQL---PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479 (508)
Q Consensus 425 ~l~~~~~~~---~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 479 (508)
.++++.+.. .+|..++. ++..|+ +|.+..+++.....-|..+.+.+..++.
T Consensus 460 ~LGAld~~~~~~~LT~lGr~-ma~LPl---dPrlarmLl~a~~~gcl~e~l~IaA~Ls 513 (1283)
T TIGR01967 460 ELGALDDDEAEPQLTPIGRQ-LAQLPV---DPRLARMLLEAHRLGCLQEVLIIASALS 513 (1283)
T ss_pred HCCCCCCCCCCccccHHHHH-HhhcCC---ChHHHHHHHHhhhcCCHHHHHHHHHHHc
Confidence 999887665 58888877 999999 6888888887776666666666655543
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-38 Score=327.60 Aligned_cols=298 Identities=16% Similarity=0.129 Sum_probs=215.2
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c----------CCCE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S----------SSSG 104 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~----------~~~~ 104 (508)
.+++.+.+++.+. ||..++++|. +++.+ ++++++++.+|||||||++++..++ + ..++
T Consensus 93 ~l~~~l~~~l~~~-----g~~~~~~iQ~~ai~~~--~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 93 NLAPELMHAIHDL-----GFPYCTPIQAQVLGYT--LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4789999999998 9999999999 99998 5699999999999999999855443 2 2468
Q ss_pred EEEcchHHHHHHHHHHHHhC----CCceeeecccccc-------ccCCCcEEEEcceecc--------ccCCccEEEEcc
Q 010534 105 IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE-------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDE 165 (508)
Q Consensus 105 i~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~-------~~~~~~~iv~T~e~~~--------~l~~~~~iViDE 165 (508)
+|++||++||.|+++.++.+ |+.+..++|+... ......++++||+++. .++++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999988854 6777777776321 1235679999997753 358899999999
Q ss_pred ccccCCCCcChHHHHHHhcccC--CceEEEccCCcchHHHHHHh-HcCCcEEEEeeeecCCC------------CCCCCc
Q 010534 166 IQMLGCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERLSPL------------VPLNVP 230 (508)
Q Consensus 166 ah~~~~~~rg~~~~~~ll~l~~--~~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~~~------------~~~~~~ 230 (508)
+|.+.+......+..++-.... ....++.+++....+..+.. +......+......... ......
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~ 325 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKL 325 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHH
Confidence 9999865222223444433332 12223333332333333333 22222222111000000 000011
Q ss_pred ccc-ccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc
Q 010534 231 LGS-FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (508)
Q Consensus 231 l~~-l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip 308 (508)
+.. +.+...+.+|||+ +++.++.+++.|.+.+. .+..+||+++.++|.++++.|++ |+.+|||||+++++|||+|
T Consensus 326 l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 326 LYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVPQHKRIKTLEGFRE--GKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEccccccCCccc
Confidence 111 1122234566666 89999999999988776 89999999999999999999999 9999999999999999996
Q ss_pred -ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 309 -v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+++||+++. |.+..+|+||+|||||.|.+ |.++.+..++
T Consensus 403 ~v~~VI~~~~---------P~s~~~y~Qr~GRaGR~g~~---g~~i~~~~~~ 442 (475)
T PRK01297 403 GISHVINFTL---------PEDPDDYVHRIGRTGRAGAS---GVSISFAGED 442 (475)
T ss_pred CCCEEEEeCC---------CCCHHHHHHhhCccCCCCCC---ceEEEEecHH
Confidence 999999999 66999999999999999987 8887776654
No 27
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.3e-37 Score=333.10 Aligned_cols=305 Identities=18% Similarity=0.182 Sum_probs=218.9
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH-HHHHHcCCCEEEEcchHHHHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVA 118 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~-~~~l~~~~~~i~l~P~r~La~q~~ 118 (508)
+...+...++.. ||+..|++.|. +++.+ +.++++++++|||+|||++| +..+...+.+|||+|+++|+.++.
T Consensus 444 w~~~L~~~lk~~----FG~~sFRp~Q~eaI~ai--L~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV 517 (1195)
T PLN03137 444 WTKKLEVNNKKV----FGNHSFRPNQREIINAT--MSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQI 517 (1195)
T ss_pred chHHHHHHHHHH----cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHH
Confidence 344455555544 69999999999 99988 67999999999999999998 445566788899999999999888
Q ss_pred HHHHhCCCceeeeccccccc------------cCCCcEEEEcceeccc-------------cCCccEEEEccccccCCCC
Q 010534 119 KRLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMADV-------------VSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 119 ~~l~~~g~~~~~~~g~~~~~------------~~~~~~iv~T~e~~~~-------------l~~~~~iViDEah~~~~~~ 173 (508)
..+...|+++..+.|+.... .....++++|||.+.. ...+.+|||||||+++ +
T Consensus 518 ~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS--q 595 (1195)
T PLN03137 518 MNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS--Q 595 (1195)
T ss_pred HHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh--h
Confidence 88888899988887753211 1356899999987531 1348999999999998 5
Q ss_pred cChHHHHH------Hhc-ccCCceEEEccCCcchHHHHHHhHcCCc---EEEEeeeecCC----CCCCCC---cc-cccc
Q 010534 174 RGFSFTRA------LLG-ICANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSP----LVPLNV---PL-GSFS 235 (508)
Q Consensus 174 rg~~~~~~------ll~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~~----~~~~~~---~l-~~l~ 235 (508)
||+.+... +.. ++...+..+..+++......+....+.. +....+.+..- ...... .+ ..+.
T Consensus 596 WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~ 675 (1195)
T PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIK 675 (1195)
T ss_pred cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHH
Confidence 67654321 222 2233333344444434444455444321 11111111110 000000 11 1111
Q ss_pred cc--CCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEE
Q 010534 236 NI--QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (508)
Q Consensus 236 ~~--~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~V 312 (508)
.. ....+|+|.|++.++.+++.|+..+. .+..+||+|++++|..+++.|.+ |+.+|||||++++||||+| |++|
T Consensus 676 ~~~~~esgIIYC~SRke~E~LAe~L~~~Gi-ka~~YHAGLs~eeR~~vqe~F~~--Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 676 ENHFDECGIIYCLSRMDCEKVAERLQEFGH-KAAFYHGSMDPAQRAFVQKQWSK--DEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred hcccCCCceeEeCchhHHHHHHHHHHHCCC-CeeeeeCCCCHHHHHHHHHHHhc--CCCcEEEEechhhcCCCccCCcEE
Confidence 11 22345555599999999999998877 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhc
Q 010534 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLL 368 (508)
Q Consensus 313 I~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~ 368 (508)
|++++ |.+...|+||+|||||.|.. |.|+.++.. +...++.++.
T Consensus 753 IHydl---------PkSiEsYyQriGRAGRDG~~---g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 753 IHHSL---------PKSIEGYHQECGRAGRDGQR---SSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred EEcCC---------CCCHHHHHhhhcccCCCCCC---ceEEEEecHHHHHHHHHHHh
Confidence 99999 55999999999999999987 899888764 3445555654
No 28
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=333.64 Aligned_cols=325 Identities=23% Similarity=0.302 Sum_probs=247.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----Hc-CCCEEEEcchHHH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRLL 113 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~-~~~~i~l~P~r~L 113 (508)
.+++.+.+.++.. ++.++.++|+ ++.... .+++|+++++|||||||++|+..+ .+ +++++|++|+|+|
T Consensus 15 ~~~~~v~~i~~~~-----~~~el~~~qq~av~~~~-~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkAL 88 (766)
T COG1204 15 KLDDRVLEILKGD-----GIDELFNPQQEAVEKGL-LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKAL 88 (766)
T ss_pred cccHHHHHHhccC-----ChHHhhHHHHHHhhccc-cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHH
Confidence 4778888999888 8878888777 444333 348999999999999999985554 34 3799999999999
Q ss_pred HHHHHHHHH---hCCCceeeeccccccc---cCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHH
Q 010534 114 AWEVAKRLN---KANVSCDLITGQEREE---VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFT 179 (508)
Q Consensus 114 a~q~~~~l~---~~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~ 179 (508)
|.|.++.++ .+|++++..||+.... ..+..++|+|+|.++. ...+++|||||+|.+.+..||+...
T Consensus 89 a~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 89 AEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 999999998 6899999999987643 3688999999999874 3689999999999999988999977
Q ss_pred HHHhcccCC--ceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCCC-------------CC---------ccc-cc
Q 010534 180 RALLGICAN--ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL-------------NV---------PLG-SF 234 (508)
Q Consensus 180 ~~ll~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~-------------~~---------~l~-~l 234 (508)
.++..+... .++++|.++++++..+++.|.+.... ...+++.++... .. .+. .+
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~ 247 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVL 247 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHH
Confidence 666554433 38999999999999999999988655 222223222110 00 000 01
Q ss_pred cccCCC-CEEEEe-eHHHHHHHHHHHHhc------------------------------------CCCeEEEEcCCCCHH
Q 010534 235 SNIQTG-DCIVTF-SRHAIYRLKKAIESR------------------------------------GKHLCSIVYGSLPPE 276 (508)
Q Consensus 235 ~~~~~~-~~iv~~-s~~~~~~l~~~L~~~------------------------------------~~~~v~~lhg~l~~~ 276 (508)
..+..+ .+++|. |++.+...++.+.+. -..++++||++|+.+
T Consensus 248 ~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~ 327 (766)
T COG1204 248 ESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRE 327 (766)
T ss_pred HHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHH
Confidence 112334 445555 898888888888731 012488999999999
Q ss_pred HHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccC-cccccCChhhHHhhhccCCCCCCC-CCcEEEEE
Q 010534 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG-VELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTC 354 (508)
Q Consensus 277 ~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~-~~~~p~s~~~~~Qr~GRagR~g~~-~~~G~~~~ 354 (508)
+|..+++.|++ |+++|||||++++.|+|+|+++||..+..+|++ .+.++++..+++|++|||||.|-+ ++.+.++.
T Consensus 328 ~R~~vE~~Fr~--g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 328 DRQLVEDAFRK--GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHhc--CCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999999 999999999999999999999999999999993 347889999999999999999976 34455554
Q ss_pred ecCCCHHHHHh-hhcCCCch
Q 010534 355 LDSEDLPLLHK-SLLEPSPM 373 (508)
Q Consensus 355 ~~~~~~~~~~~-~~~~~~~~ 373 (508)
...++...+.+ +....+++
T Consensus 406 ~~~~~~~~~~~~~~~~~~e~ 425 (766)
T COG1204 406 TSHDELEYLAELYIQSEPEP 425 (766)
T ss_pred cCccchhHHHHHhhccCcch
Confidence 34444333333 44444444
No 29
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=308.02 Aligned_cols=333 Identities=18% Similarity=0.165 Sum_probs=247.3
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHcC----------C-CEEEEc
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS----------S-SGIYCG 108 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~----------~-~~i~l~ 108 (508)
|+....+.+++. +|..+|++|. +||.+ ++|++++-.+.||||||++++-+++++ | .+++|.
T Consensus 76 ls~~t~kgLke~-----~fv~~teiQ~~~Ip~a--L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 76 LSQKTLKGLKEA-----KFVKMTEIQRDTIPMA--LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred CchHHHHhHhhc-----CCccHHHHHHhhcchh--ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 667778888888 9999999999 99998 779999999999999999976555431 2 568999
Q ss_pred chHHHHHHHHHHHHhC----CCceeeecccccc-----ccCCCcEEEEccee-cccc--------CCccEEEEccccccC
Q 010534 109 PLRLLAWEVAKRLNKA----NVSCDLITGQERE-----EVDGAKHRAVTVEM-ADVV--------SDYDCAVIDEIQMLG 170 (508)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~-~~~l--------~~~~~iViDEah~~~ 170 (508)
|||+||.|+++.+++. +..++++.|+... ...+-+++||||.. +.++ .++.++|+|||+.+.
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~L 228 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRML 228 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHH
Confidence 9999999999999965 5778898887532 23478899999943 3332 789999999999999
Q ss_pred CCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEEEee--------------eecCCCCCCCCcc-c
Q 010534 171 CKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQSY--------------ERLSPLVPLNVPL-G 232 (508)
Q Consensus 171 ~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~--------------~~~~~~~~~~~~l-~ 232 (508)
|+ ||. +..++-.+++....++.+++....+.+++...-. +..|..+ +-..++..+...+ .
T Consensus 229 DM--GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 229 DM--GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HH--hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 88 665 5677778999988899988888888888876332 2222222 1112222222222 2
Q ss_pred cccccCCCCEEEEe-eHHHHHHHHHHHHhc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-c
Q 010534 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (508)
Q Consensus 233 ~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v 309 (508)
-+..+.+...|||+ |.+++..+++.+.+. ++..+..+||.|++..|.++...|.. ...-||+|||++++|+|+| |
T Consensus 307 FI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 307 FIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCccc
Confidence 23344566777777 799999999999875 44589999999999999999999998 7778999999999999998 9
Q ss_pred cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCc----hhhhcCCCCcHHH
Q 010534 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP----MLESAGLFPNFDL 385 (508)
Q Consensus 310 ~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~----~i~~~~l~~~~~~ 385 (508)
++||.+|+ |.+..+|+||+||++|.+.. |...++...+++...+..+-+...+ .+....+...-..
T Consensus 385 dwViQ~DC---------Pedv~tYIHRvGRtAR~~~~-G~sll~L~psEeE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~ 454 (758)
T KOG0343|consen 385 DWVIQVDC---------PEDVDTYIHRVGRTARYKER-GESLLMLTPSEEEAMLKKLQKKKIPIKEIKIDPEKLTSIRNK 454 (758)
T ss_pred ceEEEecC---------chhHHHHHHHhhhhhcccCC-CceEEEEcchhHHHHHHHHHHcCCCHHhhccCHHHhhhHHHH
Confidence 99999999 77999999999999999986 3333344444433444444333322 1222333444455
Q ss_pred HHHHHhhCC
Q 010534 386 IYMYSRLHP 394 (508)
Q Consensus 386 l~~~~~~~~ 394 (508)
++++....|
T Consensus 455 l~~ll~~~~ 463 (758)
T KOG0343|consen 455 LEALLAKDP 463 (758)
T ss_pred HHHHHhhCH
Confidence 555554444
No 30
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.6e-37 Score=334.44 Aligned_cols=323 Identities=20% Similarity=0.253 Sum_probs=239.5
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----H-cCCCEEEEcchHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----E-SSSSGIYCGPLRLLA 114 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~-~~~~~i~l~P~r~La 114 (508)
+++.+.+.+++. |+..|+++|. +++... .+++++++++|||||||+++..++ . .++++||++|+++|+
T Consensus 8 l~~~~~~~l~~~-----g~~~l~~~Q~~ai~~~~-~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKER-----GIEELYPPQAEALKSGV-LEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhC-----CCCCCCHHHHHHHHHHH-hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 788999999998 9999999999 888522 568999999999999999984443 2 356899999999999
Q ss_pred HHHHHHHHh---CCCceeeeccccccc---cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHH
Q 010534 115 WEVAKRLNK---ANVSCDLITGQEREE---VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTR 180 (508)
Q Consensus 115 ~q~~~~l~~---~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~ 180 (508)
.|+++++.+ +|+++..++|+.... ..+..++++||+.++ +++++++||+||+|.+.+..||..+..
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~ 161 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEM 161 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHH
Confidence 999988874 588999999976432 235689999998764 347899999999999998888888777
Q ss_pred HHhcccCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCC----------CCCcc--------ccccc-c-CCC
Q 010534 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----------LNVPL--------GSFSN-I-QTG 240 (508)
Q Consensus 181 ~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~l--------~~l~~-~-~~~ 240 (508)
++..+. ...++++.+++.+....+..|.+.... ....++.++.. ..... ..+.+ + ..+
T Consensus 162 il~~l~-~~~qiI~lSATl~n~~~la~wl~~~~~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 239 (720)
T PRK00254 162 ILTHML-GRAQILGLSATVGNAEELAEWLNAELV-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGK 239 (720)
T ss_pred HHHhcC-cCCcEEEEEccCCCHHHHHHHhCCccc-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCC
Confidence 765554 456778888888778888888765432 11122222210 00000 00001 1 234
Q ss_pred CEEEEe-eHHHHHHHHHHHHhc--------------------------------CCCeEEEEcCCCCHHHHHHHHHHhcC
Q 010534 241 DCIVTF-SRHAIYRLKKAIESR--------------------------------GKHLCSIVYGSLPPETRTRQATRFND 287 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~--------------------------------~~~~v~~lhg~l~~~~R~~~~~~f~~ 287 (508)
.++||+ |++.++.++..+... -..+|.+|||+|++++|..+++.|++
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~ 319 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE 319 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC
Confidence 555555 898888777665321 01259999999999999999999999
Q ss_pred CCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC--HHHHHh
Q 010534 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED--LPLLHK 365 (508)
Q Consensus 288 ~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~--~~~~~~ 365 (508)
|.++|||||+++++|+|+|...||..+...|++.+..+.+..+|+||+|||||.|.+ ..|.++.+...+ .+.+++
T Consensus 320 --G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~ii~~~~~~~~~~~~~ 396 (720)
T PRK00254 320 --GLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYD-EVGEAIIVATTEEPSKLMER 396 (720)
T ss_pred --CCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcC-CCceEEEEecCcchHHHHHH
Confidence 999999999999999999977777777777775566677889999999999998754 447776665432 245667
Q ss_pred hhcCCCchh
Q 010534 366 SLLEPSPML 374 (508)
Q Consensus 366 ~~~~~~~~i 374 (508)
++...++.+
T Consensus 397 ~~~~~pe~l 405 (720)
T PRK00254 397 YIFGKPEKL 405 (720)
T ss_pred HHhCCchhh
Confidence 766555444
No 31
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.3e-36 Score=324.42 Aligned_cols=307 Identities=19% Similarity=0.227 Sum_probs=216.7
Q ss_pred HHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH-HHHHcCCCEEEEcchHHHHHHHHHH
Q 010534 43 VIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVAKR 120 (508)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~-~~l~~~~~~i~l~P~r~La~q~~~~ 120 (508)
....+.+++. +|+..+++.|+ +++.+ ++++++++++|||||||+++. ..+...+.++|++|+++|+.|+.+.
T Consensus 11 ~~~~~~l~~~----fG~~~~r~~Q~~ai~~i--l~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~ 84 (607)
T PRK11057 11 SLAKQVLQET----FGYQQFRPGQQEIIDAV--LSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQ 84 (607)
T ss_pred hHHHHHHHHH----cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHH
Confidence 3344445443 59999999999 99988 569999999999999999974 4556678899999999999999999
Q ss_pred HHhCCCceeeeccccccc----------cCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHH--
Q 010534 121 LNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTR-- 180 (508)
Q Consensus 121 l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~-- 180 (508)
++..|+.+..+.+..... .....++++||+.+.. ..++++|||||||++. +||+.+..
T Consensus 85 l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~--~~G~~fr~~y 162 (607)
T PRK11057 85 LLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS--QWGHDFRPEY 162 (607)
T ss_pred HHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc--cccCcccHHH
Confidence 999999888776643221 1245688999976542 2579999999999998 45654321
Q ss_pred -H---Hhc-ccCCceEEEccCCcchHHHHHHhHcCCc---EEEEeeeecCCC---CCCCCcc----ccccccCCCCEEEE
Q 010534 181 -A---LLG-ICANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSPL---VPLNVPL----GSFSNIQTGDCIVT 245 (508)
Q Consensus 181 -~---ll~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~~~---~~~~~~l----~~l~~~~~~~~iv~ 245 (508)
. +.. .+...+..+.++.+......+....+.. ..+..+.+.... ......+ ..+.....+..|||
T Consensus 163 ~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIF 242 (607)
T PRK11057 163 AALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIY 242 (607)
T ss_pred HHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEE
Confidence 1 111 2222222233322223333344443221 111112111100 0001111 11222233444555
Q ss_pred e-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCc
Q 010534 246 F-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGV 323 (508)
Q Consensus 246 ~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~ 323 (508)
+ |+++++.+++.|++.+. .+..+||+|++++|.++++.|++ |+.+|||||+++++|||+| |++||+++.
T Consensus 243 c~tr~~~e~la~~L~~~g~-~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLVaT~a~~~GIDip~V~~VI~~d~------ 313 (607)
T PRK11057 243 CNSRAKVEDTAARLQSRGI-SAAAYHAGLDNDVRADVQEAFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI------ 313 (607)
T ss_pred ECcHHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHHC--CCCCEEEEechhhccCCCCCcCEEEEeCC------
Confidence 5 99999999999998876 89999999999999999999999 9999999999999999997 999999999
Q ss_pred ccccCChhhHHhhhccCCCCCCCCCcEEEEEecC-CCHHHHHhhhcCCCc
Q 010534 324 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKSLLEPSP 372 (508)
Q Consensus 324 ~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~-~~~~~~~~~~~~~~~ 372 (508)
|.|..+|+||+|||||.|.. |.|+.+++ .+...++.+++....
T Consensus 314 ---P~s~~~y~Qr~GRaGR~G~~---~~~ill~~~~d~~~~~~~~~~~~~ 357 (607)
T PRK11057 314 ---PRNIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEEKPA 357 (607)
T ss_pred ---CCCHHHHHHHhhhccCCCCC---ceEEEEeCHHHHHHHHHHHhcCCc
Confidence 55999999999999999987 77777664 445666777665443
No 32
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.1e-37 Score=314.58 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=212.8
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLRL 112 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r~ 112 (508)
+++.+.+.+... ++..|+++|. +++.+ .+++++++.||||||||++++.++. .+.+++|++|+++
T Consensus 35 l~~~~~~~l~~~-----~~~~~~~~Q~~ai~~i--~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~ 107 (401)
T PTZ00424 35 LNEDLLRGIYSY-----GFEKPSAIQQRGIKPI--LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRE 107 (401)
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHH
Confidence 788999999888 9999999999 99998 5689999999999999999755443 2346899999999
Q ss_pred HHHHHHHHHHhC----CCceeeecccccc------ccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCc
Q 010534 113 LAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 113 La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~r 174 (508)
|+.|+.+.+..+ +..+....|+... ...+..++++||+.+. .+++++++||||||++.+..+
T Consensus 108 L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~ 187 (401)
T PTZ00424 108 LAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGF 187 (401)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcch
Confidence 999999888754 4556666665421 1234689999997643 368899999999999985433
Q ss_pred ChHHHHHHhcccCCceEEEccCCcc-hHHHHHHhH-cCCcEEEEeeeecCCCCC-------------CCCcccc-ccccC
Q 010534 175 GFSFTRALLGICANELHLCGDPAAV-PLIQQILQV-TGDDVKVQSYERLSPLVP-------------LNVPLGS-FSNIQ 238 (508)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~v~~~~~~~~~~~-------------~~~~l~~-l~~~~ 238 (508)
+..+...+..+... .++++.+++. +....+... ......+........... ....+.. +....
T Consensus 188 ~~~~~~i~~~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (401)
T PTZ00424 188 KGQIYDVFKKLPPD-VQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLT 266 (401)
T ss_pred HHHHHHHHhhCCCC-cEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcC
Confidence 33344444444333 3444433443 222222222 222221111100000000 0000111 11223
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
....++|+ +++.++.+++.+.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMDQKDRDLIMREFRS--GSTRVLITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcccccCCcCcccCCEEEEEC
Confidence 34455555 89999999999988766 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
. |.+..+|+||+|||||.|.. |.|+.+..++
T Consensus 344 ~---------p~s~~~y~qr~GRagR~g~~---G~~i~l~~~~ 374 (401)
T PTZ00424 344 L---------PASPENYIHRIGRSGRFGRK---GVAINFVTPD 374 (401)
T ss_pred C---------CCCHHHEeecccccccCCCC---ceEEEEEcHH
Confidence 8 66999999999999999987 8998887665
No 33
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=301.59 Aligned_cols=298 Identities=20% Similarity=0.202 Sum_probs=226.3
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----------------cCC
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------------SSS 102 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----------------~~~ 102 (508)
.++..+.+.+... +|..++++|. ++|.. ++++++|.++.||||||.+++.+|+ +++
T Consensus 251 ~~P~e~l~~I~~~-----~y~eptpIqR~aipl~--lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 251 GFPLELLSVIKKP-----GYKEPTPIQRQAIPLG--LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred CCCHHHHHHHHhc-----CCCCCchHHHhhccch--hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 4788899999998 9999999999 99987 7899999999999999988644332 245
Q ss_pred CEEEEcchHHHHHHHHHHHHh----CCCceeeeccccccc------cCCCcEEEEccee-ccc-------cCCccEEEEc
Q 010534 103 SGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE------VDGAKHRAVTVEM-ADV-------VSDYDCAVID 164 (508)
Q Consensus 103 ~~i~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~------~~~~~~iv~T~e~-~~~-------l~~~~~iViD 164 (508)
.+++++|||+||+|+.+.-.+ +|+.+..+.|+.... ..++.++++||.- .+. ++++.++|+|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 789999999999999987665 477777777765443 3378899999943 332 5899999999
Q ss_pred cccccCCCCcChHHHHHHhcccCC-------------------------ceEEEccCCcchHHHHHHhHcC-CcEEEEee
Q 010534 165 EIQMLGCKTRGFSFTRALLGICAN-------------------------ELHLCGDPAAVPLIQQILQVTG-DDVKVQSY 218 (508)
Q Consensus 165 Eah~~~~~~rg~~~~~~ll~l~~~-------------------------~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~ 218 (508)
||+.+.|+.......++|-.++.. ...++.+++..+.+..++...- +.+.+..-
T Consensus 404 eadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig 483 (673)
T KOG0333|consen 404 EADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG 483 (673)
T ss_pred chhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec
Confidence 999999985555666777555422 1233445555566666664332 22222211
Q ss_pred --eecCC----------CCCCCCcc-cccccc-CCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHH
Q 010534 219 --ERLSP----------LVPLNVPL-GSFSNI-QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 284 (508)
Q Consensus 219 --~~~~~----------~~~~~~~l-~~l~~~-~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~ 284 (508)
.+..+ .+.....+ ..+.+. .+..+||+++++.|+.+++.|++.+. +++.+||+-++++|...++.
T Consensus 484 ~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~qeQRe~aL~~ 562 (673)
T KOG0333|consen 484 SAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKSQEQRENALAD 562 (673)
T ss_pred cCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCccHHHHHHHHHH
Confidence 11111 11111112 223333 34445555589999999999999997 99999999999999999999
Q ss_pred hcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 285 FNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 285 f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|+. |..+||||||++++||||| |.+||++++.| +..+|.||+||+||.|.. |.++.|+..+
T Consensus 563 fr~--~t~dIlVaTDvAgRGIDIpnVSlVinydmak---------sieDYtHRIGRTgRAGk~---GtaiSflt~~ 624 (673)
T KOG0333|consen 563 FRE--GTGDILVATDVAGRGIDIPNVSLVINYDMAK---------SIEDYTHRIGRTGRAGKS---GTAISFLTPA 624 (673)
T ss_pred HHh--cCCCEEEEecccccCCCCCccceeeecchhh---------hHHHHHHHhccccccccC---ceeEEEeccc
Confidence 999 8899999999999999996 99999999966 999999999999999998 8888776554
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.1e-37 Score=335.26 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=215.5
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c--CCCEEEEcchHH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--SSSGIYCGPLRL 112 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~--~~~~i~l~P~r~ 112 (508)
.+++.+.+.+.+. |+..|+++|+ ++|.+ ++++++++.+|||||||+++..+++ + +.+++|++|||+
T Consensus 20 ~l~~~l~~~L~~~-----g~~~p~~~Q~~ai~~i--l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAA-----GIHRPWQHQARAAELA--HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHc-----CCCcCCHHHHHHHHHH--HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHH
Confidence 4788999999998 9999999999 99999 5699999999999999999754433 3 247899999999
Q ss_pred HHHHHHHHHHhC---CCceeeeccccccc-----cCCCcEEEEcceecc------------ccCCccEEEEccccccCCC
Q 010534 113 LAWEVAKRLNKA---NVSCDLITGQEREE-----VDGAKHRAVTVEMAD------------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 113 La~q~~~~l~~~---g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~------------~l~~~~~iViDEah~~~~~ 172 (508)
||.|+.++++++ ++.+..++|+.... ..+..++++||+++. .++++++|||||||.+.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 999999999876 56777788875432 235778899997763 157899999999999965
Q ss_pred CcChHHHHHHhcc------cCCceEEEccCCcchHHHHHHh-HcCCcEEEEeee----------ecCCC--CCC------
Q 010534 173 TRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYE----------RLSPL--VPL------ 227 (508)
Q Consensus 173 ~rg~~~~~~ll~l------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~----------~~~~~--~~~------ 227 (508)
.+|..+...+-.+ .....+++..+++.+....++. ..+....+.... ...+. ...
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 251 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAP 251 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccc
Confidence 3554433332111 1223445555555544444443 344333321110 00010 000
Q ss_pred ---------CCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcC-------CCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q 010534 228 ---------NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRG-------KHLCSIVYGSLPPETRTRQATRFNDASS 290 (508)
Q Consensus 228 ---------~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~-------~~~v~~lhg~l~~~~R~~~~~~f~~~~g 290 (508)
...+..+.+ .....|+|+ |++.++.+++.+++.. ..++..+||++++++|.++++.|++ |
T Consensus 252 ~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~--G 328 (742)
T TIGR03817 252 VRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD--G 328 (742)
T ss_pred cccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc--C
Confidence 000111111 234555555 9999999999887641 2378899999999999999999999 9
Q ss_pred CeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 291 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 291 ~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+.++|||||++++||||| ++.||+++. |.+.++|+||+|||||.|.. |.++.+..+
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~---------P~s~~~y~qRiGRaGR~G~~---g~ai~v~~~ 385 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGF---------PGTRASLWQQAGRAGRRGQG---ALVVLVARD 385 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCC---------CCCHHHHHHhccccCCCCCC---cEEEEEeCC
Confidence 999999999999999996 999999999 66999999999999999987 888777653
No 35
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-37 Score=300.71 Aligned_cols=306 Identities=20% Similarity=0.236 Sum_probs=235.4
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----C------CCEEEEc
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S------SSGIYCG 108 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----~------~~~i~l~ 108 (508)
.|+.++.+++... ||..||++|. .||.+ +-+++++.+|.||||||.+++.++++ . -++++++
T Consensus 187 NLSRPlLka~~~l-----Gy~~PTpIQ~a~IPva--llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 187 NLSRPLLKACSTL-----GYKKPTPIQVATIPVA--LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred ccchHHHHHHHhc-----CCCCCCchhhhcccHH--hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 3778889999999 9999999999 99998 55999999999999999997655543 1 2679999
Q ss_pred chHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcce-eccc--------cCCccEEEEcccccc
Q 010534 109 PLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVE-MADV--------VSDYDCAVIDEIQML 169 (508)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e-~~~~--------l~~~~~iViDEah~~ 169 (508)
|||+|+.|++...+++ .+.|++..|+.... ...+.++|+||. +.++ +.++.++|+|||+.|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 9999999998877653 78899988875432 237889999994 4444 478999999999999
Q ss_pred CCCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHc-CCcEEEEee-------------eecCCCC--CCCCcc
Q 010534 170 GCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSY-------------ERLSPLV--PLNVPL 231 (508)
Q Consensus 170 ~~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~-------------~~~~~~~--~~~~~l 231 (508)
++. ||. +..++-.++.....++.+++...-+..++... ..++.+... .|..|-. .....+
T Consensus 340 Lee--gFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 340 LEE--GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHH--HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 976 665 45566566677778888888888888877542 233322111 1111110 011111
Q ss_pred -ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-c
Q 010534 232 -GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-N 308 (508)
Q Consensus 232 -~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-p 308 (508)
..+.+.-...++||+ |++.|+.+.-.|--.|. ++.-+||++++++|.+.++.|++ ++++||||||++++|+|| .
T Consensus 418 ~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl-~agElHGsLtQ~QRlesL~kFk~--~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 418 ASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGL-KAGELHGSLTQEQRLESLEKFKK--EEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHhcccceEEEEehHHHHHHHHHHHHHhhc-hhhhhcccccHHHHHHHHHHHHh--ccCCEEEEechhhccCCccc
Confidence 122233345566666 89999999888866665 89999999999999999999999 999999999999999999 5
Q ss_pred ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-HHHHhhhcC
Q 010534 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKSLLE 369 (508)
Q Consensus 309 v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-~~~~~~~~~ 369 (508)
|..||||.+ |.+...|+||+||++|.|.. |..+.+..++. ..++..+..
T Consensus 495 V~tVINy~m---------P~t~e~Y~HRVGRTARAGRa---GrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 495 VQTVINYAM---------PKTIEHYLHRVGRTARAGRA---GRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eeEEEeccC---------chhHHHHHHHhhhhhhcccC---cceEEEeccccHHHHHHHHhh
Confidence 999999999 56999999999999999998 99888876654 455555544
No 36
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5.3e-37 Score=297.56 Aligned_cols=304 Identities=18% Similarity=0.179 Sum_probs=231.1
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH----HHHHcC------C-CEEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESS------S-SGIYC 107 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~----~~l~~~------~-~~i~l 107 (508)
.|++....+++++ ||..||++|+ .+|.+ +.++++++.|-||||||++++ +.+.+. + .+++|
T Consensus 88 ~LS~~t~kAi~~~-----GF~~MT~VQ~~ti~pl--l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 88 SLSPLTLKAIKEM-----GFETMTPVQQKTIPPL--LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred ccCHHHHHHHHhc-----CccchhHHHHhhcCcc--CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 5888999999999 9999999999 99988 679999999999999999964 444332 2 46888
Q ss_pred cchHHHHHHHHHHHHhC-----CCceeeeccccccc------cCCCcEEEEcce-ecccc--------CCccEEEEcccc
Q 010534 108 GPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVE-MADVV--------SDYDCAVIDEIQ 167 (508)
Q Consensus 108 ~P~r~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e-~~~~l--------~~~~~iViDEah 167 (508)
+|||+||.|++..++++ ++.++++.|+.... ..+..++|+||. .++++ +..+++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 99999999999988853 77888888876543 237889999994 44554 556789999999
Q ss_pred ccCCCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHcC--CcEEEEeeee--------------cCCCCCCCC
Q 010534 168 MLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTG--DDVKVQSYER--------------LSPLVPLNV 229 (508)
Q Consensus 168 ~~~~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~~~~--------------~~~~~~~~~ 229 (508)
++.+. ||. ...++-.++.....++.+++..+-+++++...- +...+..... ..+......
T Consensus 241 rlLd~--GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 241 RLLDI--GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred hhhhc--ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99977 665 567777778888888888888777877775422 2222221110 111111101
Q ss_pred cc-cccccc-CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccc
Q 010534 230 PL-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (508)
Q Consensus 230 ~l-~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gid 306 (508)
.+ ..+.+. ....++||| |...+..+++.|+... ..|..+||++++..|..+...|.+ .+.-||||||+++||+|
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk~~Q~kRT~~~~~F~k--aesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGKQKQNKRTSTFFEFCK--AESGILVCTDVAARGLD 395 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcCCcccccchHHHHHhh--cccceEEecchhhccCC
Confidence 11 222333 337788888 7888888999998554 489999999999999999999999 78889999999999999
Q ss_pred cc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEE-EecCCCHHHHHhhh
Q 010534 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT-CLDSEDLPLLHKSL 367 (508)
Q Consensus 307 ip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~-~~~~~~~~~~~~~~ 367 (508)
+| |++||++|. |-++.+|+||+||+||.|.. |..+ .+.++++.+++.+-
T Consensus 396 ~P~V~~VvQ~~~---------P~d~~~YIHRvGRTaR~gk~---G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 396 IPDVDWVVQYDP---------PSDPEQYIHRVGRTAREGKE---GKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCceEEEEeCC---------CCCHHHHHHHhccccccCCC---ceEEEEeChhHHHHHHHHh
Confidence 98 999999999 66999999999999998876 5543 34555555555543
No 37
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=282.70 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=233.4
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH----HHHcCCC---EEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLESSSS---GIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~----~l~~~~~---~i~l~P~r 111 (508)
++.+++.+.++.+ ++..+|++|+ ++|.+ +.|++++-+|.||||||+++.. .+.+++. ++++.|||
T Consensus 13 Gl~~Wlve~l~~l-----~i~~pTpiQ~~cIpkI--LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 13 GLSPWLVEQLKAL-----GIKKPTPIQQACIPKI--LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred CccHHHHHHHHHh-----cCCCCCchHhhhhHHH--hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 5899999999999 9999999999 99999 6699999999999999999643 3344443 47889999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceeccc------------cCCccEEEEcccccc
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMADV------------VSDYDCAVIDEIQML 169 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~ 169 (508)
+||.|++++|..+ +++|.+++|+.... .++..++++||+.+.. ++++.++|+|||+.+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999854 68889999986543 3467778889865532 378999999999999
Q ss_pred CCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCC---cEEEEeee------------ecCCCCCCCCcc---
Q 010534 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYE------------RLSPLVPLNVPL--- 231 (508)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~v~~~~------------~~~~~~~~~~~l--- 231 (508)
.+....-.+..+.-.+++....++.+++..+.++.+....-. .+++..+. -..+....+..+
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~ 245 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHL 245 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHH
Confidence 876444344555556777767777776666666665533222 12222111 111111111111
Q ss_pred -ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-
Q 010534 232 -GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (508)
Q Consensus 232 -~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip- 308 (508)
....+.+.+.+++|. +..+|+.++..|+.... ++..+||-|++.+|...+.+|++ +..+||||||++++|+|||
T Consensus 246 Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~-r~~~lHs~m~Q~eR~~aLsrFrs--~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 246 LRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV-RVVSLHSQMPQKERLAALSRFRS--NAARILIATDVASRGLDIPT 322 (442)
T ss_pred HhhhhhccCceEEEEeehhHHHHHHHHHHhhhce-eeeehhhcchHHHHHHHHHHHhh--cCccEEEEechhhcCCCCCc
Confidence 122222456666665 78999999999998877 89999999999999999999999 9999999999999999998
Q ss_pred ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEec-CCCHH---HHHhhhcCCCchhh
Q 010534 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLP---LLHKSLLEPSPMLE 375 (508)
Q Consensus 309 v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~-~~~~~---~~~~~~~~~~~~i~ 375 (508)
|+.|||++. |.++..|+||.||++|.|.. |..+.+. ..|.+ .+++-+.....+..
T Consensus 323 V~LVvN~di---------Pr~P~~yiHRvGRtARAGR~---G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 323 VELVVNHDI---------PRDPKDYIHRVGRTARAGRK---GMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred eeEEEecCC---------CCCHHHHHHhhcchhcccCC---cceEEEechhhHHHHHHHHHHHhccccccc
Confidence 999999999 66999999999999999987 5554443 34443 44444555544433
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.5e-36 Score=331.94 Aligned_cols=373 Identities=18% Similarity=0.222 Sum_probs=249.0
Q ss_pred ccccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c---------CC
Q 010534 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S---------SS 102 (508)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~---------~~ 102 (508)
.++.+++.+.+.++.. +..|+++|+ ++|.+ ++++++++++|||||||++|+.++. . +.
T Consensus 14 ~~~~l~~~v~~~~~~~------~~~~tpiQ~~Ai~~i--l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~ 85 (876)
T PRK13767 14 ILDLLRPYVREWFKEK------FGTFTPPQRYAIPLI--HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKV 85 (876)
T ss_pred HHhhcCHHHHHHHHHc------cCCCCHHHHHHHHHH--HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCe
Confidence 3456888888887765 889999999 99998 5699999999999999999755443 1 12
Q ss_pred CEEEEcchHHHHHHHHHHHHh---------------C-CCceeeecccccccc------CCCcEEEEcceecc-------
Q 010534 103 SGIYCGPLRLLAWEVAKRLNK---------------A-NVSCDLITGQEREEV------DGAKHRAVTVEMAD------- 153 (508)
Q Consensus 103 ~~i~l~P~r~La~q~~~~l~~---------------~-g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~------- 153 (508)
+++|++|+|+|+.|+++++.+ . ++.+.+.+|+..... ....++++||+.+.
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~ 165 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK 165 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh
Confidence 479999999999999886541 1 456778888764322 25678899998763
Q ss_pred ---ccCCccEEEEccccccCCCCcChHHHHHH---hcccCCceEEEccCCcchHHHHHHhHcCC--------cEEEEee-
Q 010534 154 ---VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---LGICANELHLCGDPAAVPLIQQILQVTGD--------DVKVQSY- 218 (508)
Q Consensus 154 ---~l~~~~~iViDEah~~~~~~rg~~~~~~l---l~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~v~~~- 218 (508)
.+.++++|||||+|.+.+..||..+...+ ..+.....+.++.+++......+..+.+. .+.+...
T Consensus 166 ~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~ 245 (876)
T PRK13767 166 FREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR 245 (876)
T ss_pred HHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccC
Confidence 24789999999999999888887654333 33333455667777777655566555432 1222111
Q ss_pred -eec------CCCCC---C-CC----c-ccccccc--CCCCEEEEe-eHHHHHHHHHHHHhcC-----CCeEEEEcCCCC
Q 010534 219 -ERL------SPLVP---L-NV----P-LGSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRG-----KHLCSIVYGSLP 274 (508)
Q Consensus 219 -~~~------~~~~~---~-~~----~-l~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~-----~~~v~~lhg~l~ 274 (508)
.+. .+... . .. . ...+.+. ..+.++||+ |++.++.++..|++.. ...+..+||+++
T Consensus 246 ~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls 325 (876)
T PRK13767 246 FVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLS 325 (876)
T ss_pred CCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCC
Confidence 000 01000 0 00 0 0111111 234555555 8999999999998742 247999999999
Q ss_pred HHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEE
Q 010534 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353 (508)
Q Consensus 275 ~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~ 353 (508)
+++|..+++.|++ |+.+|||||+++++|||+| +++||+++. |.+.++|+||+|||||.+...+.|.++
T Consensus 326 ~~~R~~ve~~fk~--G~i~vLVaTs~Le~GIDip~Vd~VI~~~~---------P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 326 REVRLEVEEKLKR--GELKVVVSSTSLELGIDIGYIDLVVLLGS---------PKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred HHHHHHHHHHHHc--CCCeEEEECChHHhcCCCCCCcEEEEeCC---------CCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 9999999999999 9999999999999999996 999999998 569999999999999975444669998
Q ss_pred EecCCCHH----HHHhhhcCCCchhh--hcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHH
Q 010534 354 CLDSEDLP----LLHKSLLEPSPMLE--SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVA 427 (508)
Q Consensus 354 ~~~~~~~~----~~~~~~~~~~~~i~--~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 427 (508)
....+++. ..+.+.+...+.+. ..++.-...++...... ...+..++.+.+.... .|.--..+++..+.
T Consensus 395 ~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~-~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~l 469 (876)
T PRK13767 395 VVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIE-RPWDIEEAYNIVRRAY----PYRDLSDEDFESVL 469 (876)
T ss_pred EcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHc-CCCCHHHHHHHHhccC----CcccCCHHHHHHHH
Confidence 87766642 23334444443321 12222233444443333 3456666655333221 12222335566666
Q ss_pred HhhhcC
Q 010534 428 TVIDQL 433 (508)
Q Consensus 428 ~~~~~~ 433 (508)
+++...
T Consensus 470 ~~l~~~ 475 (876)
T PRK13767 470 RYLAGD 475 (876)
T ss_pred HHHhcc
Confidence 655543
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-35 Score=317.76 Aligned_cols=296 Identities=21% Similarity=0.210 Sum_probs=214.5
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH-HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~-~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (508)
||+..|++.|+ +++.+ ++++++++++|||+|||+++. ..+...+.++|++|+++|+.|+.+.++.+|+++..++|.
T Consensus 9 fg~~~fr~~Q~~~i~~i--l~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~ 86 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHV--LDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNST 86 (591)
T ss_pred cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 69999999999 99998 568999999999999999974 455667889999999999999999999999999888775
Q ss_pred cccc----------cCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHHH------Hh-cccCCc
Q 010534 135 EREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRA------LL-GICANE 189 (508)
Q Consensus 135 ~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~~------ll-~l~~~~ 189 (508)
.... .....++++||+.+.. ..+++++||||||+++ +||+.+... +. .++...
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~--~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS--QWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc--cccCccHHHHHHHHHHHHhCCCCC
Confidence 3221 1345788999987632 3689999999999998 567653211 11 222333
Q ss_pred eEEEccCCcchHHHHHHhHcCC---cEEEEeeeecCC------CCCCCCcc-ccccccCCCCEEEEe-eHHHHHHHHHHH
Q 010534 190 LHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSP------LVPLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAI 258 (508)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~---~~~v~~~~~~~~------~~~~~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L 258 (508)
+..+.++.+......+..+.+. ...+..+.+... .......+ ..+.....+..|||+ |++.++.+++.|
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L 244 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERL 244 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 3333333333444445554432 111111211110 00000111 222222334445554 899999999999
Q ss_pred HhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhh
Q 010534 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIA 337 (508)
Q Consensus 259 ~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~ 337 (508)
...+. .+..+||+|++++|..+++.|.+ |+.+|||||+++++|||+| +++||+++. |.|..+|+||+
T Consensus 245 ~~~g~-~~~~~H~~l~~~~R~~i~~~F~~--g~~~vlVaT~a~~~GID~p~v~~VI~~~~---------p~s~~~y~Q~~ 312 (591)
T TIGR01389 245 ESQGI-SALAYHAGLSNKVRAENQEDFLY--DDVKVMVATNAFGMGIDKPNVRFVIHYDM---------PGNLESYYQEA 312 (591)
T ss_pred HhCCC-CEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCcCCCCCEEEEcCC---------CCCHHHHhhhh
Confidence 88776 89999999999999999999999 9999999999999999997 999999999 55999999999
Q ss_pred ccCCCCCCCCCcEEEEEecCC-CHHHHHhhhcCCC
Q 010534 338 GRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPS 371 (508)
Q Consensus 338 GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~~~~ 371 (508)
|||||.|.. |.|+.+++. +...++.+++...
T Consensus 313 GRaGR~G~~---~~~il~~~~~d~~~~~~~i~~~~ 344 (591)
T TIGR01389 313 GRAGRDGLP---AEAILLYSPADIALLKRRIEQSE 344 (591)
T ss_pred ccccCCCCC---ceEEEecCHHHHHHHHHHHhccC
Confidence 999999976 777766654 4455566665533
No 40
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=290.30 Aligned_cols=313 Identities=18% Similarity=0.133 Sum_probs=210.5
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------------CCCEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------SSSGI 105 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------------~~~~i 105 (508)
+|++.+...+... .++..||.+|. +||.+ +++++++|.++||||||++|+.++.+ +.-++
T Consensus 142 GL~~~lv~~L~~~----m~i~~pTsVQkq~IP~l--L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 142 GLHPHLVSHLNTK----MKISAPTSVQKQAIPVL--LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred CCCHHHHHHHHHH----hccCccchHhhcchhhh--hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 4888888888776 48999999999 99999 66999999999999999998665532 22469
Q ss_pred EEcchHHHHHHHHHHHHhCCCc-----eeeecccccccc------CCCcEEEEcce-ecccc--------CCccEEEEcc
Q 010534 106 YCGPLRLLAWEVAKRLNKANVS-----CDLITGQEREEV------DGAKHRAVTVE-MADVV--------SDYDCAVIDE 165 (508)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~g~~-----~~~~~g~~~~~~------~~~~~iv~T~e-~~~~l--------~~~~~iViDE 165 (508)
|++|||+||.|+|+.+.++-.+ .+++.|++++.. .+.+++|.||. .++.+ .++.++|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 9999999999999999976322 234455554433 37789999994 44543 7799999999
Q ss_pred ccccCCCCcChHHHHHHhcccC-------------CceEEEccCCcchHHHHHHhHcCC-cEEEEe--------------
Q 010534 166 IQMLGCKTRGFSFTRALLGICA-------------NELHLCGDPAAVPLIQQILQVTGD-DVKVQS-------------- 217 (508)
Q Consensus 166 ah~~~~~~rg~~~~~~ll~l~~-------------~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~-------------- 217 (508)
+|.+.+...+-..+.++-.+-. ....++-+++..+-+.++....-. .+.+..
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~ 375 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAV 375 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhh
Confidence 9999987444445555533311 122233333333444444432211 111110
Q ss_pred --------------e---------eecCCCCCCC----Ccc-ccccccCCCCEEEEe-eHHHHHHHHHHHHhc-------
Q 010534 218 --------------Y---------ERLSPLVPLN----VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESR------- 261 (508)
Q Consensus 218 --------------~---------~~~~~~~~~~----~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~------- 261 (508)
+ +...|....- ..+ ...........|||| +.+.++.=++.+.+.
T Consensus 376 ~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~ 455 (708)
T KOG0348|consen 376 QEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG 455 (708)
T ss_pred hhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccccc
Confidence 0 0000000000 000 011112345678888 577777666666542
Q ss_pred --------------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccc
Q 010534 262 --------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 326 (508)
Q Consensus 262 --------------~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~ 326 (508)
-..++.-+||+|++++|..+++.|.. ....||+|||++++|+|+| |++||.|+.
T Consensus 456 ~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~--~~~~VLLcTDVAaRGLDlP~V~~vVQYd~--------- 524 (708)
T KOG0348|consen 456 SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH--SRRAVLLCTDVAARGLDLPHVGLVVQYDP--------- 524 (708)
T ss_pred ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc--ccceEEEehhhhhccCCCCCcCeEEEeCC---------
Confidence 12358899999999999999999999 7777999999999999998 999999999
Q ss_pred cCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCc
Q 010534 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372 (508)
Q Consensus 327 p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
|.+.++|+||+||++|.|.. |..+.+.+..+. .|-++++....
T Consensus 525 P~s~adylHRvGRTARaG~k-G~alLfL~P~Ea--ey~~~l~~~~~ 567 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAGEK-GEALLFLLPSEA--EYVNYLKKHHI 567 (708)
T ss_pred CCCHHHHHHHhhhhhhccCC-CceEEEecccHH--HHHHHHHhhcc
Confidence 77999999999999999986 334434333332 35555544443
No 41
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-37 Score=315.64 Aligned_cols=369 Identities=18% Similarity=0.213 Sum_probs=272.5
Q ss_pred CCCCCCccc---cchHHHh--------cCCceEEEEccCCCchHHHHHHHHHcCC--------CE-E-EEcchHHHHHHH
Q 010534 59 FTDLTRPHT---WYPLARK--------KVRKVILHVGPTNSGKTHQALSRLESSS--------SG-I-YCGPLRLLAWEV 117 (508)
Q Consensus 59 ~~~~~~~q~---~~~~~~~--------~~~~~~iv~~pTGsGKT~~~~~~l~~~~--------~~-i-~l~P~r~La~q~ 117 (508)
...+.++|+ .+|.+-. ..|.+|||+|.||||||++.+|+|.++| .+ | +..|+|..|..+
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 455666665 4444311 3589999999999999999999998764 22 3 459999999999
Q ss_pred HHHHH-hC---CCceeeeccccccccCCCcEEEEcceec------c-ccCCccEEEEccccccCCCCcChHHHHHHhccc
Q 010534 118 AKRLN-KA---NVSCDLITGQEREEVDGAKHRAVTVEMA------D-VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186 (508)
Q Consensus 118 ~~~l~-~~---g~~~~~~~g~~~~~~~~~~~iv~T~e~~------~-~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~ 186 (508)
++|+. ++ |-+|+.....+.....++.+.++|..++ + .|.+|++|||||||+++-+ +++|+|+.
T Consensus 322 AkRVa~EL~~~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvn------TDILiGmL 395 (1172)
T KOG0926|consen 322 AKRVAFELGVLGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVN------TDILIGML 395 (1172)
T ss_pred HHHHHHHhccCccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccch------HHHHHHHH
Confidence 99987 44 4456655555555556888999998554 2 3699999999999999877 99998876
Q ss_pred CC----------------ceEEEccCCcch------------HHHHHHhHcCCcEEEEe-eeecCCCCCCCCc----ccc
Q 010534 187 AN----------------ELHLCGDPAAVP------------LIQQILQVTGDDVKVQS-YERLSPLVPLNVP----LGS 233 (508)
Q Consensus 187 ~~----------------~~~~~~~~~~~~------------~~~~l~~~~~~~~~v~~-~~~~~~~~~~~~~----l~~ 233 (508)
.+ .+.++-++++.. +...+.+...++++|.. +.+..+.++.... ...
T Consensus 396 SRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~I 475 (1172)
T KOG0926|consen 396 SRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKI 475 (1172)
T ss_pred HHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHH
Confidence 43 233333333321 11112223333444433 3444454443222 234
Q ss_pred ccccCCCCEEEEe-eHHHHHHHHHHHHhc---------------------------------------------------
Q 010534 234 FSNIQTGDCIVTF-SRHAIYRLKKAIESR--------------------------------------------------- 261 (508)
Q Consensus 234 l~~~~~~~~iv~~-s~~~~~~l~~~L~~~--------------------------------------------------- 261 (508)
..++++|.++||. .++++..+++.|++.
T Consensus 476 H~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~ 555 (1172)
T KOG0926|consen 476 HKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQE 555 (1172)
T ss_pred hhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhh
Confidence 4567899999999 599999999998764
Q ss_pred -----------------------------------------------CCCeEEEEcCCCCHHHHHHHHHHhcC-CCCCee
Q 010534 262 -----------------------------------------------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFD 293 (508)
Q Consensus 262 -----------------------------------------------~~~~v~~lhg~l~~~~R~~~~~~f~~-~~g~~~ 293 (508)
+...|.++|+-++.+ ++.+.|.. |.|.+-
T Consensus 556 ~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~---~Q~RVF~~~p~g~RL 632 (1172)
T KOG0926|consen 556 LVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTE---KQMRVFDEVPKGERL 632 (1172)
T ss_pred hhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHH---HhhhhccCCCCCceE
Confidence 122388999999999 66667776 669999
Q ss_pred EEEeccccccccccc-ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHH
Q 010534 294 VLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363 (508)
Q Consensus 294 ilVaT~~~~~Gidip-v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~ 363 (508)
++||||+++++++|| |++||++|..| ||.. ...|+|.++.-||+|||||.|+ |.||++|+.. .|
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp----GHcYRLYSSA--Vf 706 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP----GHCYRLYSSA--VF 706 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC----CceeehhhhH--Hh
Confidence 999999999999997 99999999776 7653 5789999999999999999999 9999999875 66
Q ss_pred H-hhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhcCCCCHHHHHH
Q 010534 364 H-KSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442 (508)
Q Consensus 364 ~-~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~ 442 (508)
. .|.+.+.|+|.+.+....+++++. +++..+.+ |.+-.+|++...-.+..-|..||++.....++..++-
T Consensus 707 ~~~Fe~fS~PEIlk~Pve~lvLqMKs-------MnI~kVvn-FPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~- 777 (1172)
T KOG0926|consen 707 SNDFEEFSLPEILKKPVESLVLQMKS-------MNIDKVVN-FPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKA- 777 (1172)
T ss_pred hcchhhhccHHHhhCcHHHHHHHHHh-------cCccceec-CCCCCCccHHHHHHHHHHHHHhccccccCCcccccch-
Confidence 6 477899999999999999999997 77777776 7777777766555556667778877776667776655
Q ss_pred hhcCCCCCC
Q 010534 443 FCISPVDMN 451 (508)
Q Consensus 443 ~~~~p~~~~ 451 (508)
++..|++++
T Consensus 778 mS~FPlsPr 786 (1172)
T KOG0926|consen 778 MSLFPLSPR 786 (1172)
T ss_pred hcccccChh
Confidence 777777654
No 42
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-36 Score=272.06 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=220.3
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHHc---CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES---SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~---~~~~i~l~P~r 111 (508)
.+.+.+.+.+... ||..|+.+|+ ++|.+ +++++|+..+..|+|||..+ ++.+.- .-+++++.|||
T Consensus 33 gl~edlLrgiY~y-----GfekPS~IQqrAi~~I--lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 33 GLKEDLLRGIYAY-----GFEKPSAIQQRAIPQI--LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred CchHHHHHHHHHh-----ccCCchHHHhhhhhhh--hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 4788999999999 9999999999 99999 67999999999999999885 343322 23679999999
Q ss_pred HHHHHHHHHHHhC----CCceeeecccccc-----c-cCCCcEEEEcc-eeccc-------cCCccEEEEccccccCCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQERE-----E-VDGAKHRAVTV-EMADV-------VSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~-----~-~~~~~~iv~T~-e~~~~-------l~~~~~iViDEah~~~~~~ 173 (508)
+||.|+.+.+..+ +++|..+.|+... . ..+..++..|| +.++. -+.+.++|+|||+++.+..
T Consensus 106 ELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh
Confidence 9999999998865 6778777776542 2 23555667777 33333 2779999999999999773
Q ss_pred cChHHHHHHhcccCCceEEEccCCc-chHHHHHHhHcCCcEEEEeeeecCCCC-------------CCCCcccccc-ccC
Q 010534 174 RGFSFTRALLGICANELHLCGDPAA-VPLIQQILQVTGDDVKVQSYERLSPLV-------------PLNVPLGSFS-NIQ 238 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~~-------------~~~~~l~~l~-~~~ 238 (508)
.+-..-++.-.++.....++.+++. ....+-.-....+++.+-......+++ ++...+..+- .+.
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt 265 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 265 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhe
Confidence 3334567777777544443333333 233333333344433322211111111 1122222221 122
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
-..+++|+ |++.+..+.+.+++... .|...||+|++++|.++++.|++ |+.+||++||+.++|+|+| |+.||+||
T Consensus 266 ItQavIFcnTk~kVdwLtekm~~~nf-tVssmHGDm~qkERd~im~dFRs--g~SrvLitTDVwaRGiDv~qVslviNYD 342 (400)
T KOG0328|consen 266 ITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMEQKERDKIMNDFRS--GKSRVLITTDVWARGIDVQQVSLVINYD 342 (400)
T ss_pred hheEEEEecccchhhHHHHHHHhhCc-eeeeccCCcchhHHHHHHHHhhc--CCceEEEEechhhccCCcceeEEEEecC
Confidence 33455555 89999999999998876 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+ |.....|+||+||.||+|.. |+++.+...+
T Consensus 343 L---------P~nre~YIHRIGRSGRFGRk---GvainFVk~~ 373 (400)
T KOG0328|consen 343 L---------PNNRELYIHRIGRSGRFGRK---GVAINFVKSD 373 (400)
T ss_pred C---------CccHHHHhhhhccccccCCc---ceEEEEecHH
Confidence 9 77999999999999999998 9998886544
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=311.04 Aligned_cols=371 Identities=20% Similarity=0.232 Sum_probs=267.6
Q ss_pred ccccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cC--------CC
Q 010534 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--------SS 103 (508)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~--------~~ 103 (508)
.+..+++.++++++.. +.+||++|. ++|.+ .+|++++++||||||||.+|+.++. +. -.
T Consensus 4 ~~~~l~~~v~~~~~~~------~~~~t~~Q~~a~~~i--~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~ 75 (814)
T COG1201 4 IFNILDPRVREWFKRK------FTSLTPPQRYAIPEI--HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIY 75 (814)
T ss_pred hhhhcCHHHHHHHHHh------cCCCCHHHHHHHHHH--hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceE
Confidence 3567899999999997 999999999 99999 5799999999999999999865543 22 14
Q ss_pred EEEEcchHHHHHHHHHHHH----hCCCceeeecccccccc-----CC-CcEEEEcceeccc----------cCCccEEEE
Q 010534 104 GIYCGPLRLLAWEVAKRLN----KANVSCDLITGQEREEV-----DG-AKHRAVTVEMADV----------VSDYDCAVI 163 (508)
Q Consensus 104 ~i~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~~~-----~~-~~~iv~T~e~~~~----------l~~~~~iVi 163 (508)
++|+.|.|+|.+++..++. ++|+++.+.||++.... .+ +.++++|||.+.. +.++.+|||
T Consensus 76 ~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 76 ALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 5999999999999999987 46999999999875432 23 4566788887643 589999999
Q ss_pred ccccccCCCCcChHHHHHHhc---ccCCceEEEccCCcchHHHHHHhHcCCc---EEEEeeeecC--------CCCC---
Q 010534 164 DEIQMLGCKTRGFSFTRALLG---ICANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLS--------PLVP--- 226 (508)
Q Consensus 164 DEah~~~~~~rg~~~~~~ll~---l~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~--------~~~~--- 226 (508)
||+|.+.+..||..+.-.|.. +.. .++-+|-++++.....+..+.+.. +.+....-.. |...
T Consensus 156 DEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~ 234 (814)
T COG1201 156 DEIHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIY 234 (814)
T ss_pred ehhhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCcccc
Confidence 999999999999987654433 333 677788888887776666665442 3443321111 1111
Q ss_pred C----CCccc---cccccCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc
Q 010534 227 L----NVPLG---SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299 (508)
Q Consensus 227 ~----~~~l~---~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~ 299 (508)
. ...+. .+.+......||++||..++.++..|++.+...+..|||+++.+.|..++++|++ |+.+++|||+
T Consensus 235 ~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~--G~lravV~TS 312 (814)
T COG1201 235 DEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE--GELKAVVATS 312 (814)
T ss_pred ccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc--CCceEEEEcc
Confidence 0 00111 1122233345555699999999999999886689999999999999999999999 9999999999
Q ss_pred cccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH----HHHHhhhcCCC--c
Q 010534 300 AIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL----PLLHKSLLEPS--P 372 (508)
Q Consensus 300 ~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~----~~~~~~~~~~~--~ 372 (508)
.++-|||+ .|+.||+++. |.+.+.+.||+||+|+.-..-+.|.++....+++ ...+.+.+... .
T Consensus 313 SLELGIDiG~vdlVIq~~S---------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~ 383 (814)
T COG1201 313 SLELGIDIGDIDLVIQLGS---------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERI 383 (814)
T ss_pred chhhccccCCceEEEEeCC---------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999 5999999998 5599999999999997654446799888876553 23333444333 3
Q ss_pred hhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhc
Q 010534 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432 (508)
Q Consensus 373 ~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 432 (508)
++...++.-...++-...-.. ..++.++.+..... ..|.--..+++..+.+++..
T Consensus 384 ~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrra----ypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 384 KIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRA----YPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred CCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhc----cccccCCHHHHHHHHHHHhh
Confidence 455556655555555433322 44555554422221 22333345667777776666
No 44
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.5e-36 Score=316.14 Aligned_cols=332 Identities=16% Similarity=0.093 Sum_probs=218.1
Q ss_pred ccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------------------CCCEEEEcchHHHHHHHHHHHHh-
Q 010534 65 PHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------------SSSGIYCGPLRLLAWEVAKRLNK- 123 (508)
Q Consensus 65 ~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------------------~~~~i~l~P~r~La~q~~~~l~~- 123 (508)
+|+ .++.+ .+++++++.|+||||||++.+|++.. .+++++++|||+||.|+..++.+
T Consensus 168 iQ~qil~~i--~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 168 VQLKIFEAW--ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHH--HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 344 66766 46999999999999999997665531 23678889999999999999874
Q ss_pred C------CCceeeeccccccc-----cCCCcEEEEccee-ccccCCccEEEEccccccCCCCcChHHHHHHhccc----C
Q 010534 124 A------NVSCDLITGQEREE-----VDGAKHRAVTVEM-ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC----A 187 (508)
Q Consensus 124 ~------g~~~~~~~g~~~~~-----~~~~~~iv~T~e~-~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~----~ 187 (508)
. |.++.+.+|+.... .....++++|+.+ ...+.++++|||||||++... + +.++++. .
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~--~----DllL~llk~~~~ 319 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQI--G----DIIIAVARKHID 319 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccc--h----hHHHHHHHHhhh
Confidence 2 45567777765421 1244678888765 346799999999999999865 3 3333322 2
Q ss_pred CceEEEccCCcc-hHHHHHHhHcCCcEEE----------EeeeecCCCC---------C-CCCccccccc---cCCCCEE
Q 010534 188 NELHLCGDPAAV-PLIQQILQVTGDDVKV----------QSYERLSPLV---------P-LNVPLGSFSN---IQTGDCI 243 (508)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~v----------~~~~~~~~~~---------~-~~~~l~~l~~---~~~~~~i 243 (508)
+..+++..+++. +....+....+....+ ..++...... . ....+..+.. ...++++
T Consensus 320 ~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iL 399 (675)
T PHA02653 320 KIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGI 399 (675)
T ss_pred hcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEE
Confidence 211333333343 2333444433332222 2211111000 0 0001111221 1346778
Q ss_pred EEe-eHHHHHHHHHHHHhcC-CCeEEEEcCCCCHHHHHHHHHHh-cCCCCCeeEEEeccccccccccc-ccEEEEccccc
Q 010534 244 VTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRF-NDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (508)
Q Consensus 244 v~~-s~~~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~f-~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~ 319 (508)
||+ ++.+++.+++.|++.. ...+.++||++++. .++++.| ++ |+++||||||++|+||||| |++||++|..+
T Consensus 400 VFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~--gk~kILVATdIAERGIDIp~V~~VID~G~~k 475 (675)
T PHA02653 400 VFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSS--KNPSIIISTPYLESSVTIRNATHVYDTGRVY 475 (675)
T ss_pred EEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhcc--CceeEEeccChhhccccccCeeEEEECCCcc
Confidence 777 8999999999998763 35899999999985 3556676 66 8999999999999999996 99999998433
Q ss_pred c---cCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcC---CCCcHHHHHHHHhhC
Q 010534 320 F---DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG---LFPNFDLIYMYSRLH 393 (508)
Q Consensus 320 ~---d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~---l~~~~~~l~~~~~~~ 393 (508)
. .+....|+|.++|.||+|||||.++ |.|+.+++++. + .+ +.+.+ +.+.++.++.+....
T Consensus 476 ~p~~~~g~~~~iSkasa~QRaGRAGR~~~----G~c~rLyt~~~--~-------~p-I~ri~~~~L~~~vL~lk~~g~~~ 541 (675)
T PHA02653 476 VPEPFGGKEMFISKSMRTQRKGRVGRVSP----GTYVYFYDLDL--L-------KP-IKRIDSEFLHNYILYAKYFNLTL 541 (675)
T ss_pred CCCcccCcccccCHHHHHHhccCcCCCCC----CeEEEEECHHH--h-------HH-HHHHhHHHHHHHHHHHHHcCCCC
Confidence 1 1223457899999999999999965 99999998762 1 12 45444 667777778754321
Q ss_pred CCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhh
Q 010534 394 PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID 431 (508)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 431 (508)
+ . +...++|+......+.+.|..+++..+
T Consensus 542 ~--------~-~~~ldpP~~~~l~~A~~~L~~lga~~~ 570 (675)
T PHA02653 542 P--------E-DLFVIPSNLDRLRKTEEYIDSFNISIE 570 (675)
T ss_pred c--------c-cccCCCCCHHHHHHHHHHHHHcCCCch
Confidence 1 1 114666666666667777777774433
No 45
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=275.53 Aligned_cols=332 Identities=17% Similarity=0.180 Sum_probs=239.0
Q ss_pred CCCCCCCcccccccCccccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc
Q 010534 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
.++|-++.+++.+. .|.|++.+.+..+ +|..|+.+|+ ++|.+.....++.|..+..|+|||.++...++.
T Consensus 82 pnsPlyS~ksFeeL----~LkPellkgly~M-----~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLs 152 (477)
T KOG0332|consen 82 PNSPLYSAKSFEEL----RLKPELLKGLYAM-----KFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLS 152 (477)
T ss_pred CCCCccccccHHhh----CCCHHHHhHHHHh-----ccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHH
Confidence 34455555444443 3789999998888 9999999999 999998888999999999999999998665543
Q ss_pred -------CCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc-------ccCCCcEEEEcceec-cc--------cCC
Q 010534 101 -------SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-------EVDGAKHRAVTVEMA-DV--------VSD 157 (508)
Q Consensus 101 -------~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~-------~~~~~~~iv~T~e~~-~~--------l~~ 157 (508)
.+++++++|+|+||.|+.+.+.+.|..+.+......+ ..-...+++.||..+ ++ +..
T Consensus 153 rvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 153 RVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred hcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhh
Confidence 3578999999999999999999988766432221111 111456788898543 22 378
Q ss_pred ccEEEEccccccCCCCcChHH--HHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEEE------------eeeecC
Q 010534 158 YDCAVIDEIQMLGCKTRGFSF--TRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQ------------SYERLS 222 (508)
Q Consensus 158 ~~~iViDEah~~~~~~rg~~~--~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~------------~~~~~~ 222 (508)
+.++|+|||+.+.+ .+|+.- .++...++.....+..+++...-+..++...-. .-.+. .++-.+
T Consensus 233 ikvfVlDEAD~Mi~-tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C 311 (477)
T KOG0332|consen 233 IKVFVLDEADVMID-TQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLC 311 (477)
T ss_pred ceEEEecchhhhhh-cccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeec
Confidence 99999999999987 566653 233344454555556666666666666544322 11111 111111
Q ss_pred CCCCC-CCcccccc-ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc
Q 010534 223 PLVPL-NVPLGSFS-NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299 (508)
Q Consensus 223 ~~~~~-~~~l~~l~-~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~ 299 (508)
+-... ...+..+. -+.-|..|+|+ |++.+..++..+...|. .|..+||+|.-++|..+++.|+. |..+|||+||
T Consensus 312 ~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLitTn 388 (477)
T KOG0332|consen 312 ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLTVEQRAAIIDRFRE--GKEKVLITTN 388 (477)
T ss_pred cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCc-eeEEeeccchhHHHHHHHHHHhc--CcceEEEEec
Confidence 11100 11111111 12335556666 99999999999999988 99999999999999999999999 9999999999
Q ss_pred ccccccccc-ccEEEEcccc-cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC-----HHHHHhhhcCCCc
Q 010534 300 AIGMGLNLN-ISRIIFSTMK-KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-----LPLLHKSLLEPSP 372 (508)
Q Consensus 300 ~~~~Gidip-v~~VI~~~~~-~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~-----~~~~~~~~~~~~~ 372 (508)
+++||||++ |..||+||++ +|++. -+.+.|+||+||+||+|.. |.++.+.+++ +..++++++....
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~----pD~etYlHRiGRtGRFGkk---G~a~n~v~~~~s~~~mn~iq~~F~~~i~ 461 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGE----PDYETYLHRIGRTGRFGKK---GLAINLVDDKDSMNIMNKIQKHFNMKIK 461 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCC----CCHHHHHHHhccccccccc---ceEEEeecccCcHHHHHHHHHHHhhcce
Confidence 999999996 9999999987 46653 4899999999999999998 9998886654 2455556655544
Q ss_pred h
Q 010534 373 M 373 (508)
Q Consensus 373 ~ 373 (508)
.
T Consensus 462 ~ 462 (477)
T KOG0332|consen 462 R 462 (477)
T ss_pred e
Confidence 3
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.7e-35 Score=297.98 Aligned_cols=297 Identities=20% Similarity=0.233 Sum_probs=227.4
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH-HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~-~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (508)
||+.++++.|+ .|..+ +.++++++..|||+|||++| +.++...|-+|+|.|..+|+.++.+.+...|+.+..+.+.
T Consensus 13 fGy~~FR~gQ~evI~~~--l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~ 90 (590)
T COG0514 13 FGYASFRPGQQEIIDAL--LSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNST 90 (590)
T ss_pred hCccccCCCHHHHHHHH--HcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcc
Confidence 68999999999 88888 56899999999999999998 6677778899999999999999999999999998887765
Q ss_pred ccccc----------CCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHHH-------HhcccCCc
Q 010534 135 EREEV----------DGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRA-------LLGICANE 189 (508)
Q Consensus 135 ~~~~~----------~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~~-------ll~l~~~~ 189 (508)
..... ..-.+++.+||.+.. ..++.++||||||+++ +||+.|... .-+++.-.
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~~p 168 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPNPP 168 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh--hcCCccCHhHHHHHHHHhhCCCCC
Confidence 32221 235788999987643 2679999999999999 789776422 22333233
Q ss_pred eEEEccCCcchHHHHHHhHcCC---cEEEEeeeecCCC-CCCC-----Ccccccc----ccCCCCEEEEeeHHHHHHHHH
Q 010534 190 LHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSPL-VPLN-----VPLGSFS----NIQTGDCIVTFSRHAIYRLKK 256 (508)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~---~~~v~~~~~~~~~-~~~~-----~~l~~l~----~~~~~~~iv~~s~~~~~~l~~ 256 (508)
+..+..+++.....++....+. ...+..+.|++-. .... ..+.-+. ......+|+|.|++.++.+++
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 169 VLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHH
Confidence 3444455555555666655443 2333444443211 1100 0111112 223345777779999999999
Q ss_pred HHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHh
Q 010534 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (508)
Q Consensus 257 ~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Q 335 (508)
.|++.+. ++..+||+|+.++|..+.+.|.. ++.+|+|||.+++||||-| |++||++++ |.|.++|.|
T Consensus 249 ~L~~~g~-~a~~YHaGl~~~eR~~~q~~f~~--~~~~iiVAT~AFGMGIdKpdVRfViH~~l---------P~s~EsYyQ 316 (590)
T COG0514 249 WLRKNGI-SAGAYHAGLSNEERERVQQAFLN--DEIKVMVATNAFGMGIDKPDVRFVIHYDL---------PGSIESYYQ 316 (590)
T ss_pred HHHHCCC-ceEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeccccCccCCCCceEEEEecC---------CCCHHHHHH
Confidence 9999966 99999999999999999999999 9999999999999999997 999999999 669999999
Q ss_pred hhccCCCCCCCCCcEEEEEecC-CCHHHHHhhhcCCCc
Q 010534 336 IAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKSLLEPSP 372 (508)
Q Consensus 336 r~GRagR~g~~~~~G~~~~~~~-~~~~~~~~~~~~~~~ 372 (508)
-+|||||.|.. ..|+.++. .|....+.+++...+
T Consensus 317 E~GRAGRDG~~---a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 317 ETGRAGRDGLP---AEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred HHhhccCCCCc---ceEEEeeccccHHHHHHHHHhhcc
Confidence 99999999987 88888876 555566666666543
No 47
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=289.77 Aligned_cols=299 Identities=17% Similarity=0.175 Sum_probs=222.5
Q ss_pred ccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c-------------
Q 010534 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S------------- 100 (508)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~------------- 100 (508)
..+.+.+...++.. +++.++++|+ .+|.+ .++++.+.+|+||||||.+++.++. +
T Consensus 79 ~~l~~~l~~ni~~~-----~~~~ptpvQk~sip~i--~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~ 151 (482)
T KOG0335|consen 79 AILGEALAGNIKRS-----GYTKPTPVQKYSIPII--SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGV 151 (482)
T ss_pred cchhHHHhhccccc-----cccCCCcceeecccee--ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCC
Confidence 34666777777777 9999999999 99999 6699999999999999999865553 1
Q ss_pred CCCEEEEcchHHHHHHHHHHHHhC----CCceeeecccccc------ccCCCcEEEEcceecc--------ccCCccEEE
Q 010534 101 SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAV 162 (508)
Q Consensus 101 ~~~~i~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iV 162 (508)
.+++++++|||+||.|++++.+++ +..+..++|+... ...+..++++|+..+. .+.++.++|
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~v 231 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLV 231 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEE
Confidence 146799999999999999999865 5667777776322 2346789999995553 258899999
Q ss_pred EccccccCC-CCcChHHHHHHhcccC----CceEEEccCCcchHHHHHHhHcCCc-EEEEeeee--------------cC
Q 010534 163 IDEIQMLGC-KTRGFSFTRALLGICA----NELHLCGDPAAVPLIQQILQVTGDD-VKVQSYER--------------LS 222 (508)
Q Consensus 163 iDEah~~~~-~~rg~~~~~~ll~l~~----~~~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~~--------------~~ 222 (508)
+|||+.|.| ..++.....++....- ....++.+++....+..+....-.+ +......+ ..
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 999999998 7777776666654432 2334455555444444444332221 22111111 11
Q ss_pred CCCCCCCcccccccc----CCC-----CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCe
Q 010534 223 PLVPLNVPLGSFSNI----QTG-----DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292 (508)
Q Consensus 223 ~~~~~~~~l~~l~~~----~~~-----~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~ 292 (508)
......+.+..+... ..+ ..++|. +++.+..++..|...+. ....+||..++.+|.+.++.|+. |..
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~-~~~sIhg~~tq~er~~al~~Fr~--g~~ 388 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY-PAKSIHGDRTQIEREQALNDFRN--GKA 388 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC-CceeecchhhhhHHHHHHHHhhc--CCc
Confidence 111111111122111 122 355555 89999999999999887 89999999999999999999999 999
Q ss_pred eEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 293 DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 293 ~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.|||||+++++|+||| |++||+||+ |-+..+|+||+||+||.|.. |.++.|.++.
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDm---------P~d~d~YvHRIGRTGR~Gn~---G~atsf~n~~ 444 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDM---------PADIDDYVHRIGRTGRVGNG---GRATSFFNEK 444 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeec---------CcchhhHHHhccccccCCCC---ceeEEEeccc
Confidence 9999999999999996 999999999 55899999999999999998 9998888754
No 48
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1e-34 Score=285.62 Aligned_cols=305 Identities=23% Similarity=0.232 Sum_probs=241.8
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHHc-CCCEEEEcchHHH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES-SSSGIYCGPLRLL 113 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~-~~~~i~l~P~r~L 113 (508)
++++..++.++.. |+..+.++|. +...= -+.+.|.+++++|+||||+++ ++.++. +++-+|++|..+|
T Consensus 200 dipe~fk~~lk~~-----G~~eLlPVQ~laVe~G-LLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 200 DIPEKFKRMLKRE-----GIEELLPVQVLAVEAG-LLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred CCcHHHHHHHHhc-----Ccceecchhhhhhhhc-cccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 5788999999999 9999999999 66543 268999999999999999995 444444 7889999999999
Q ss_pred HHHHHHHHH----hCCCceeeecccccc----------ccCCCcEEEEcceeccc-------cCCccEEEEccccccCCC
Q 010534 114 AWEVAKRLN----KANVSCDLITGQERE----------EVDGAKHRAVTVEMADV-------VSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 114 a~q~~~~l~----~~g~~~~~~~g~~~~----------~~~~~~~iv~T~e~~~~-------l~~~~~iViDEah~~~~~ 172 (508)
|+|-++.|. ++|+.+.+-.|..+. ...++.+||.|+|-++. +.+++.|||||+|++.+.
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence 999999887 468888777774332 23368899999977664 588999999999999999
Q ss_pred CcChHHHHHHhcc--cCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCCC----------CCcccccc-----
Q 010534 173 TRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL----------NVPLGSFS----- 235 (508)
Q Consensus 173 ~rg~~~~~~ll~l--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~----------~~~l~~l~----- 235 (508)
+||+.+.-.+-.+ ....-++++.++++.+...+++..+..+.. ...|+.|++.. ...+..+.
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~-y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVL-YDERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEe-ecCCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 9999865443222 123456777888888999999998886543 33455665421 11111111
Q ss_pred ----ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccccc
Q 010534 236 ----NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310 (508)
Q Consensus 236 ----~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~ 310 (508)
.-..|+.|||. |++.|+++++.|...|. ++.++|++|+..+|+.++..|.+ +++.++|+|.+++.|+|+|.+
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~-~a~pYHaGL~y~eRk~vE~~F~~--q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGL-KAAPYHAGLPYKERKSVERAFAA--QELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCCc-ccccccCCCcHHHHHHHHHHHhc--CCcceEeehhhhhcCCCCchH
Confidence 11356666665 99999999999998876 99999999999999999999999 999999999999999999999
Q ss_pred EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 311 ~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.||+-.+.. +..|+|+.+|.|+.|||||.+. +..|.||.+....
T Consensus 510 QVIFEsLaM----G~~WLs~~EF~QM~GRAGRp~y-HdrGkVyllvepg 553 (830)
T COG1202 510 QVIFESLAM----GIEWLSVREFQQMLGRAGRPDY-HDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHHc----ccccCCHHHHHHHhcccCCCCc-ccCceEEEEecCC
Confidence 999765533 3459999999999999999987 4779999887554
No 49
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=269.27 Aligned_cols=312 Identities=18% Similarity=0.155 Sum_probs=233.5
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHcC-------CCEEEEcchHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRL 112 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~-------~~~i~l~P~r~ 112 (508)
|..++...+.+. |+..|+++|+ .+|.+ +.+++++..+..|+|||-++..++++. -++++++|||+
T Consensus 92 Lkr~LLmgIfe~-----G~ekPSPiQeesIPia--LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 92 LKRELLMGIFEK-----GFEKPSPIQEESIPIA--LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred hhHHHHHHHHHh-----ccCCCCCcccccccee--ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 456677777777 9999999999 99999 779999999999999999975444331 26799999999
Q ss_pred HHHHHHHHHHh----CCCceeeeccccccccC------CCcEEEEcc-eeccc-------cCCccEEEEccccccCCCCc
Q 010534 113 LAWEVAKRLNK----ANVSCDLITGQEREEVD------GAKHRAVTV-EMADV-------VSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 113 La~q~~~~l~~----~g~~~~~~~g~~~~~~~------~~~~iv~T~-e~~~~-------l~~~~~iViDEah~~~~~~r 174 (508)
||.|+...+.+ .|+.+.+.+|+.....+ .-.+++.|| +++++ +++..++|+|||+.+.+.+.
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence 99998777664 47888888998754322 344567888 44443 58899999999999998888
Q ss_pred ChHHHHHHhcccCCceEEEccCCcchHHHHHHhH-cCCcEEEEee-----------eecCCCCCCCCccc-cccccCCCC
Q 010534 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSY-----------ERLSPLVPLNVPLG-SFSNIQTGD 241 (508)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~~-----------~~~~~~~~~~~~l~-~l~~~~~~~ 241 (508)
+...+..+.-+++....++.+++..-.++.+... ...++++.-. +.......+..-+. .+.++.-..
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQ 324 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQ 324 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccc
Confidence 8888888888888777776666554445555432 3334443322 22222211111121 123344445
Q ss_pred EEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccc
Q 010534 242 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (508)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~ 319 (508)
+|+|+ |.+.++-+++.+.+.|. .+.++|+.|-++.|..++..|++ |.++.|||||.+.+|||++ +..||++|.+|
T Consensus 325 sIIFCNS~~rVELLAkKITelGy-scyyiHakM~Q~hRNrVFHdFr~--G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 325 SIIFCNSTNRVELLAKKITELGY-SCYYIHAKMAQEHRNRVFHDFRN--GKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred eEEEeccchHhHHHHHHHHhccc-hhhHHHHHHHHhhhhhhhhhhhc--cccceeeehhhhhcccccceeeEEEecCCCC
Confidence 55555 89999999999999998 89999999999999999999999 9999999999999999996 99999999955
Q ss_pred ccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC--CC--HHHHHhhhcCCCchh
Q 010534 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS--ED--LPLLHKSLLEPSPML 374 (508)
Q Consensus 320 ~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~--~~--~~~~~~~~~~~~~~i 374 (508)
+.++|+||+||+||+|.- |..+.+.. +. +..+++-+..+..+|
T Consensus 402 ---------~aEtYLHRIGRsGRFGhl---GlAInLityedrf~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 402 ---------NAETYLHRIGRSGRFGHL---GLAINLITYEDRFNLYRIEQELGTEIKPI 448 (459)
T ss_pred ---------CHHHHHHHccCCccCCCc---ceEEEEEehhhhhhHHHHHHHhccccccC
Confidence 999999999999999987 77765533 22 234444444444443
No 50
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=297.64 Aligned_cols=311 Identities=23% Similarity=0.338 Sum_probs=243.6
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c----------CCCEEEEcchHHHHHHHHHHH
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S----------SSSGIYCGPLRLLAWEVAKRL 121 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~----------~~~~i~l~P~r~La~q~~~~l 121 (508)
|++..++.+|. +||.+. ..+.|++|+||||||||-.|+..++ + +-++||++|+++||.++++.+
T Consensus 106 f~f~~fN~iQS~vFp~aY-~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAY-KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred ccHHHHHHHHHHhhhhhh-cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 57899999999 999987 5789999999999999999855443 2 237899999999999999887
Q ss_pred H----hCCCceeeeccccccc---cCCCcEEEEcceecccc-----------CCccEEEEccccccCCCCcChHHHHHH-
Q 010534 122 N----KANVSCDLITGQEREE---VDGAKHRAVTVEMADVV-----------SDYDCAVIDEIQMLGCKTRGFSFTRAL- 182 (508)
Q Consensus 122 ~----~~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~l-----------~~~~~iViDEah~~~~~~rg~~~~~~l- 182 (508)
. .+|+.|..+||+..-. ..++.++|.|||.|+.. +.++++||||+|.+.+ +||..++.++
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVa 263 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVA 263 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHH
Confidence 6 3599999999986432 45789999999999753 7799999999999987 7999875444
Q ss_pred -----hcccCCceEEEccCCcchHHHHHHhHcCCc-----EEEEeeeecCCCCCCCCcc---------cc---------c
Q 010534 183 -----LGICANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLSPLVPLNVPL---------GS---------F 234 (508)
Q Consensus 183 -----l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~l---------~~---------l 234 (508)
.......++++|-++++|+..+++.+.+.+ +.+...+|+.|+.....-. .. .
T Consensus 264 Rtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 334567899999999999999999887764 2233445566654321000 00 1
Q ss_pred cccCCCCEEEEe--eHHHHHHHHHHHHhcC----------------------CCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q 010534 235 SNIQTGDCIVTF--SRHAIYRLKKAIESRG----------------------KHLCSIVYGSLPPETRTRQATRFNDASS 290 (508)
Q Consensus 235 ~~~~~~~~iv~~--s~~~~~~l~~~L~~~~----------------------~~~v~~lhg~l~~~~R~~~~~~f~~~~g 290 (508)
..+..|..+++| ++..+.+.++.|.+.. .....++|+||..++|..+++.|.. |
T Consensus 344 e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G 421 (1230)
T KOG0952|consen 344 EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--G 421 (1230)
T ss_pred HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--C
Confidence 112455555544 8888888888776531 1248899999999999999999999 9
Q ss_pred CeeEEEecccccccccccccEEEEcccccccCcc--cccCChhhHHhhhccCCCCCCCCCcEEEEEec-CCCHHHHHhhh
Q 010534 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLPLLHKSL 367 (508)
Q Consensus 291 ~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~--~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~-~~~~~~~~~~~ 367 (508)
.++||+||..++.|+|+|...||..+...||... +...+..+.+|..|||||.+.+ ..|..+.+. .+.+..+..++
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd-~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD-SSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC-CCceEEEEecccHHHHHHHHH
Confidence 9999999999999999999999999999999864 7778999999999999999876 335554444 44457888888
Q ss_pred cCCCc
Q 010534 368 LEPSP 372 (508)
Q Consensus 368 ~~~~~ 372 (508)
..+.|
T Consensus 501 ~~~~p 505 (1230)
T KOG0952|consen 501 TGQNP 505 (1230)
T ss_pred cCCCh
Confidence 76655
No 51
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=267.65 Aligned_cols=294 Identities=16% Similarity=0.149 Sum_probs=220.9
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------------cCCCEEE
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------------SSSSGIY 106 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------------~~~~~i~ 106 (508)
-.+++.+.+++. ||..|+++|. ++|.+ +++++++.++.||+|||++++..-. .+..+++
T Consensus 227 ~~pevmenIkK~-----GFqKPtPIqSQaWPI~--LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lv 299 (629)
T KOG0336|consen 227 CYPEVMENIKKT-----GFQKPTPIQSQAWPIL--LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLV 299 (629)
T ss_pred hhHHHHHHHHhc-----cCCCCCcchhccccee--ecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEE
Confidence 357788999998 9999999999 99998 7899999999999999999753211 1246789
Q ss_pred EcchHHHHHHHHHHHHhC---CCceeeeccccccc------cCCCcEEEEcceeccc--------cCCccEEEEcccccc
Q 010534 107 CGPLRLLAWEVAKRLNKA---NVSCDLITGQEREE------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQML 169 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~---g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~ 169 (508)
+.|||+||.|+.-...++ |.+...++|+-.+. ..+..++++||..+.- +..+.++|+|||+.|
T Consensus 300 l~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrM 379 (629)
T KOG0336|consen 300 LTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRM 379 (629)
T ss_pred EeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhh
Confidence 999999999998887754 66666666654433 2367899999976542 478999999999999
Q ss_pred CCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEEEe----------eeecCCCCCCCCc---ccc-c
Q 010534 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQS----------YERLSPLVPLNVP---LGS-F 234 (508)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~----------~~~~~~~~~~~~~---l~~-l 234 (508)
+|+........+++.+......++.+++-.+-+.++....-. ...+.. .....-....... +.. +
T Consensus 380 LDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~ 459 (629)
T KOG0336|consen 380 LDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFV 459 (629)
T ss_pred hcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHH
Confidence 999777778899999998888887777666667776644322 211110 0000000000111 111 1
Q ss_pred cccCCC-CEEEEee-HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccE
Q 010534 235 SNIQTG-DCIVTFS-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (508)
Q Consensus 235 ~~~~~~-~~iv~~s-~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~ 311 (508)
....+. ++|+|++ +..+..|...+.-.+. ..-.+||+-.+.+|...++.|++ |+.+||||||++++|+|+| |.+
T Consensus 460 ~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi-~~q~lHG~r~Q~DrE~al~~~ks--G~vrILvaTDlaSRGlDv~DiTH 536 (629)
T KOG0336|consen 460 ANMSSNDKVIIFVSRKVMADHLSSDFCLKGI-SSQSLHGNREQSDREMALEDFKS--GEVRILVATDLASRGLDVPDITH 536 (629)
T ss_pred HhcCCCceEEEEEechhhhhhccchhhhccc-chhhccCChhhhhHHHHHHhhhc--CceEEEEEechhhcCCCchhcce
Confidence 223333 4555554 6667778877766665 78899999999999999999999 9999999999999999995 999
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
|++||. |.+..+|.||+||+||.|.. |..+.+.
T Consensus 537 V~NyDF---------P~nIeeYVHRvGrtGRaGr~---G~sis~l 569 (629)
T KOG0336|consen 537 VYNYDF---------PRNIEEYVHRVGRTGRAGRT---GTSISFL 569 (629)
T ss_pred eeccCC---------CccHHHHHHHhcccccCCCC---cceEEEE
Confidence 999999 66999999999999999987 6655443
No 52
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=275.57 Aligned_cols=307 Identities=20% Similarity=0.183 Sum_probs=218.4
Q ss_pred cCccccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCC-ceEEEEccCCCchHHHHHHHHHc------------
Q 010534 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVR-KVILHVGPTNSGKTHQALSRLES------------ 100 (508)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~-~~~iv~~pTGsGKT~~~~~~l~~------------ 100 (508)
...+ .++..+.+++... ||..||++|. .+|.+ ..+ .+++-.|.||||||+++-.++.+
T Consensus 183 W~~l-~lp~~iL~aL~~~-----gFs~Pt~IQsl~lp~a--i~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 183 WKNL-FLPMEILRALSNL-----GFSRPTEIQSLVLPAA--IRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred HhcC-CCCHHHHHHHHhc-----CCCCCccchhhcccHh--hccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 3344 6889999999999 9999999999 99988 445 89999999999999996322221
Q ss_pred ------CCC--EEEEcchHHHHHHHHHHHHh----CCCceeeecccccc------ccCCCcEEEEccee-cc--------
Q 010534 101 ------SSS--GIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQERE------EVDGAKHRAVTVEM-AD-------- 153 (508)
Q Consensus 101 ------~~~--~i~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~------~~~~~~~iv~T~e~-~~-------- 153 (508)
..+ ++|+.|||+||.|+.+-+.. -++.+..++|+... ......++|+||.. |.
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 134 79999999999999998874 38899999997532 23477899999933 32
Q ss_pred --ccCCccEEEEccccccCCCCcChH--HHHHHhccc-----CCceEEEccCCcc---------------------hHHH
Q 010534 154 --VVSDYDCAVIDEIQMLGCKTRGFS--FTRALLGIC-----ANELHLCGDPAAV---------------------PLIQ 203 (508)
Q Consensus 154 --~l~~~~~iViDEah~~~~~~rg~~--~~~~ll~l~-----~~~~~~~~~~~~~---------------------~~~~ 203 (508)
.++++.++|+||+++|.+. |+- ++.+|-.+. .....++.+++.. .-++
T Consensus 335 l~~~k~vkcLVlDEaDRmvek--ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq 412 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEK--GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQ 412 (731)
T ss_pred hhhhhhceEEEEccHHHHhhh--ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHH
Confidence 2488999999999999865 654 344432222 1222233322210 1123
Q ss_pred HHHhHcCC--cEEEEeeee-------------cCCCCCCCCccccc-cccCCCCEEEEeeHHHHHHHHHHHHhcCCCeEE
Q 010534 204 QILQVTGD--DVKVQSYER-------------LSPLVPLNVPLGSF-SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCS 267 (508)
Q Consensus 204 ~l~~~~~~--~~~v~~~~~-------------~~~~~~~~~~l~~l-~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~ 267 (508)
.++...|- .-.+....+ .++....+..+..+ ...+..++|||++.+.+..++-.|..... ...
T Consensus 413 ~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i-~p~ 491 (731)
T KOG0347|consen 413 HLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDI-PPL 491 (731)
T ss_pred HHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCC-CCc
Confidence 33333322 111222111 11222222233333 33444445555599999999999998877 889
Q ss_pred EEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 268 ~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
++|+.|.+++|.+.+++|++ ..-.||||||+++||+||| |.+||+|.. |.+...|+||.||++|.+..
T Consensus 492 ~LHA~M~QKqRLknLEkF~~--~~~~VLiaTDVAARGLDIp~V~HVIHYqV---------PrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQ--SPSGVLIATDVAARGLDIPGVQHVIHYQV---------PRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhc--CCCeEEEeehhhhccCCCCCcceEEEeec---------CCccceeEecccccccccCC
Confidence 99999999999999999999 6678999999999999997 999999988 55999999999999999987
Q ss_pred CCcEEEEEec-CCCHHHHHhh
Q 010534 347 FPVGEVTCLD-SEDLPLLHKS 366 (508)
Q Consensus 347 ~~~G~~~~~~-~~~~~~~~~~ 366 (508)
|+.+.+. +.+...+.++
T Consensus 561 ---Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 561 ---GVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred ---CeEEEEeChHHhHHHHHH
Confidence 8876665 4444555544
No 53
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=265.57 Aligned_cols=298 Identities=20% Similarity=0.204 Sum_probs=229.3
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH------------cCCCEEEE
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------------SSSSGIYC 107 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~------------~~~~~i~l 107 (508)
++..+..+.... .|..++++|. ++|.+ +.+++|+-+|-||||||.+++.+++ +++-++||
T Consensus 230 fDkqLm~airk~-----Ey~kptpiq~qalpta--lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vil 302 (731)
T KOG0339|consen 230 FDKQLMTAIRKS-----EYEKPTPIQCQALPTA--LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVIL 302 (731)
T ss_pred chHHHHHHHhhh-----hcccCCcccccccccc--cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEE
Confidence 578888888877 8999999999 99998 6799999999999999999755442 12346899
Q ss_pred cchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceec-c-------ccCCccEEEEcccccc
Q 010534 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQML 169 (508)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~-------~l~~~~~iViDEah~~ 169 (508)
+|||+||.|++...+++ |+.+..++|+...+ ..++.+|||||+.+ + .+.++.++|+||++.|
T Consensus 303 vPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrm 382 (731)
T KOG0339|consen 303 VPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRM 382 (731)
T ss_pred eccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhh
Confidence 99999999998887754 78888888865433 24788999999443 2 3589999999999999
Q ss_pred CCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHH-hHcCCcEEEEeeeec------------CCC--CCCCCccccc
Q 010534 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERL------------SPL--VPLNVPLGSF 234 (508)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~~~~------------~~~--~~~~~~l~~l 234 (508)
.+.........+--.+..+...++.+.+....++.++ ..+++.+.+..-.-- .+. ......+..|
T Consensus 383 fdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L 462 (731)
T KOG0339|consen 383 FDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHL 462 (731)
T ss_pred hccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHh
Confidence 9883333344555556777777777777766666655 345555544332100 000 0001111222
Q ss_pred cc-cCCCCEEEEee-HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccE
Q 010534 235 SN-IQTGDCIVTFS-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (508)
Q Consensus 235 ~~-~~~~~~iv~~s-~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~ 311 (508)
.. ...|++++|.| +..+++++..|+..+. +|..+||++.+.+|.+++..|++ +...|+||||++++|+||| +..
T Consensus 463 ~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-~v~llhgdkdqa~rn~~ls~fKk--k~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 463 VEFSSEGKVLIFVTKKADAEEIAANLKLKGF-NVSLLHGDKDQAERNEVLSKFKK--KRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred hhhccCCcEEEEEeccCCHHHHHHHhccccc-eeeeecCchhhHHHHHHHHHHhh--cCCceEEEeeHhhcCCCccccce
Confidence 22 24678888886 6778999999987776 99999999999999999999999 8889999999999999996 999
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~ 360 (508)
||++|..+ +...+.||+||+||.|.. |+.|++..+..
T Consensus 540 VvnyD~ar---------dIdththrigrtgRag~k---GvayTlvTeKD 576 (731)
T KOG0339|consen 540 VVNYDFAR---------DIDTHTHRIGRTGRAGEK---GVAYTLVTEKD 576 (731)
T ss_pred eecccccc---------hhHHHHHHhhhccccccc---ceeeEEechhh
Confidence 99999954 999999999999999987 99998877653
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.3e-32 Score=302.83 Aligned_cols=335 Identities=18% Similarity=0.193 Sum_probs=218.9
Q ss_pred EEccCCCchHHHHHHHH----Hc-------------CCCEEEEcchHHHHHHHHHHHHh----------------CCCce
Q 010534 82 HVGPTNSGKTHQALSRL----ES-------------SSSGIYCGPLRLLAWEVAKRLNK----------------ANVSC 128 (508)
Q Consensus 82 v~~pTGsGKT~~~~~~l----~~-------------~~~~i~l~P~r~La~q~~~~l~~----------------~g~~~ 128 (508)
|++|||||||++|..++ .. +.++|||+|+|+|+.|+.+.++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999975433 21 23679999999999999998752 36788
Q ss_pred eeecccccccc------CCCcEEEEcceecc---------ccCCccEEEEccccccCCCCcChHHHHHH---hcccCCce
Q 010534 129 DLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---LGICANEL 190 (508)
Q Consensus 129 ~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~rg~~~~~~l---l~l~~~~~ 190 (508)
+..+|+..... ....++|+|||.+. .++++++|||||+|.+.+..||..+...+ ..+.....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 89999864332 35678899997663 35789999999999999877897654333 33344566
Q ss_pred EEEccCCcchHHHHHHhHcCCc--EEEEee--eec------CCCCCC------------------CCc----c--ccccc
Q 010534 191 HLCGDPAAVPLIQQILQVTGDD--VKVQSY--ERL------SPLVPL------------------NVP----L--GSFSN 236 (508)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~--~~v~~~--~~~------~~~~~~------------------~~~----l--~~l~~ 236 (508)
++++.++++...+.+..+.+.. ..+... .+. .+.... ... + ..+..
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 7788888887777787776532 222110 000 000000 000 0 00111
Q ss_pred -cCCCCEEEEe-eHHHHHHHHHHHHhcCC--------------------------------CeEEEEcCCCCHHHHHHHH
Q 010534 237 -IQTGDCIVTF-SRHAIYRLKKAIESRGK--------------------------------HLCSIVYGSLPPETRTRQA 282 (508)
Q Consensus 237 -~~~~~~iv~~-s~~~~~~l~~~L~~~~~--------------------------------~~v~~lhg~l~~~~R~~~~ 282 (508)
...+..|||+ |++.|+.++..|++... ..+..|||+|++++|..++
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 1234455554 89999999999976421 1267899999999999999
Q ss_pred HHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-
Q 010534 283 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL- 360 (508)
Q Consensus 283 ~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~- 360 (508)
+.|++ |++++||||+.+++|||++ ++.||+++. |.+.++|+||+|||||...+.+.|.++.....++
T Consensus 321 ~~fK~--G~LrvLVATssLELGIDIg~VDlVIq~gs---------P~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dll 389 (1490)
T PRK09751 321 QALKS--GELRCVVATSSLELGIDMGAVDLVIQVAT---------PLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLV 389 (1490)
T ss_pred HHHHh--CCceEEEeCcHHHccCCcccCCEEEEeCC---------CCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHH
Confidence 99999 9999999999999999996 999999998 6699999999999999743223345444433332
Q ss_pred ---HHHHhhhcCCCchhhh--cCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhc
Q 010534 361 ---PLLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432 (508)
Q Consensus 361 ---~~~~~~~~~~~~~i~~--~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 432 (508)
..++.+++...+++.. .++.-...++...... ...+..++...+... ..|.--+.+++..+-+++..
T Consensus 390 e~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~~d~l~~~vrra----~pf~~L~~~~f~~vl~~L~~ 461 (1490)
T PRK09751 390 DSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQVDEWYSRVRRA----APWKDLPRRVFDATLDMLSG 461 (1490)
T ss_pred hhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCCHHHHHHHhhcc----CCcccCCHHHHHHHHHHHhc
Confidence 1244566666655321 1222223444443332 345556655533222 22333344566666666654
No 55
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=288.25 Aligned_cols=397 Identities=18% Similarity=0.146 Sum_probs=271.1
Q ss_pred cchHHHhcCCceEEEEccCCCchHHHHHHHHHcC-------CCEEEEcchHHHHHHHHHHHH-hC----CCceeeecccc
Q 010534 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRLLAWEVAKRLN-KA----NVSCDLITGQE 135 (508)
Q Consensus 68 ~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~-------~~~i~l~P~r~La~q~~~~l~-~~----g~~~~~~~g~~ 135 (508)
.+..+ .++++++|+|.||||||++.+|++++. .++++.+|+|..|..+++|++ +. |..|+...+-+
T Consensus 181 Il~~i--~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~ 258 (924)
T KOG0920|consen 181 ILDAI--EENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLE 258 (924)
T ss_pred HHHHH--HhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeee
Confidence 44444 359999999999999999999999863 244555999999999999998 33 44444444444
Q ss_pred ccccCCCcEEEEcceec-------cccCCccEEEEccccccCCCCcChHHH-HHHhcccCCceEEEccCCcch--HHHHH
Q 010534 136 REEVDGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVP--LIQQI 205 (508)
Q Consensus 136 ~~~~~~~~~iv~T~e~~-------~~l~~~~~iViDEah~~~~~~rg~~~~-~~ll~l~~~~~~~~~~~~~~~--~~~~l 205 (508)
......+.+.+||+..+ ..+..+.+||+||+|+++.+.-..... ..++.. ...++++-++++.+ ....+
T Consensus 259 ~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~-~p~LkvILMSAT~dae~fs~Y 337 (924)
T KOG0920|consen 259 SKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPR-NPDLKVILMSATLDAELFSDY 337 (924)
T ss_pred cccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhh-CCCceEEEeeeecchHHHHHH
Confidence 44445688999998543 346899999999999997651121111 112222 24455555555543 33333
Q ss_pred HhH------cCCcEEEEeee-------------ecCCC----CC--------------CCC----cccccc-ccCCCCEE
Q 010534 206 LQV------TGDDVKVQSYE-------------RLSPL----VP--------------LNV----PLGSFS-NIQTGDCI 243 (508)
Q Consensus 206 ~~~------~~~~~~v~~~~-------------~~~~~----~~--------------~~~----~l~~l~-~~~~~~~i 243 (508)
+.. .|..+++..+. ...+. .. ... .+..+. ....|.++
T Consensus 338 F~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaIL 417 (924)
T KOG0920|consen 338 FGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAIL 417 (924)
T ss_pred hCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEE
Confidence 221 22233332220 00000 00 000 011111 12467777
Q ss_pred EEe-eHHHHHHHHHHHHhcC------CCeEEEEcCCCCHHHHHHHHHHhcC-CCCCeeEEEeccccccccccc-ccEEEE
Q 010534 244 VTF-SRHAIYRLKKAIESRG------KHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 244 v~~-s~~~~~~l~~~L~~~~------~~~v~~lhg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
||. +..++..+++.|.... ..-+.++|+.|+.++++ ..|+. |+|.++||+||+++|++|+|| +.+||+
T Consensus 418 VFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~---~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVID 494 (924)
T KOG0920|consen 418 VFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQ---AVFKRPPKGTRKIILATNIAETSITIDDVVYVID 494 (924)
T ss_pred EEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHH---HhcCCCCCCcchhhhhhhhHhhcccccCeEEEEe
Confidence 777 8999999999997532 23588999999999544 45655 448899999999999999995 999999
Q ss_pred ccccc---ccCc------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhc-CCCchhhhcCCCCcHH
Q 010534 315 STMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAGLFPNFD 384 (508)
Q Consensus 315 ~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~ 384 (508)
.+..| ||+. ...|+|.++..||+|||||..+ |.||.+++.. .++.+.. .+.|++.+.++...++
T Consensus 495 sG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~----G~cy~L~~~~--~~~~~~~~~q~PEilR~pL~~l~L 568 (924)
T KOG0920|consen 495 SGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP----GICYHLYTRS--RYEKLMLAYQLPEILRTPLEELCL 568 (924)
T ss_pred cCeeeeeeecccCCcchhheeeccccchHHhcccccCccC----CeeEEeechh--hhhhcccccCChHHHhChHHHhhh
Confidence 99876 8875 4678999999999999999998 9999999987 7888777 9999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 010534 385 LIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 464 (508)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 464 (508)
++|.+. ..+..+++. ..+++|+......+.+-+..++++.....++..+++ ++..|++. .+-+.++-.+-
T Consensus 569 ~iK~l~----~~~~~~fLs--kaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~-la~lPvd~---~igK~ll~g~i 638 (924)
T KOG0920|consen 569 HIKVLE----QGSIKAFLS--KALDPPPADAVDLAIERLKQIGALDESEELTPLGLH-LASLPVDV---RIGKLLLFGAI 638 (924)
T ss_pred eeeecc----CCCHHHHHH--HhcCCCChHHHHHHHHHHHHhccccCcccchHHHHH-HHhCCCcc---ccchhheehhh
Confidence 998422 233444443 234566667777778888888888888889999987 89999854 44455555555
Q ss_pred HHHhcCcccchhhcc-CCCCCCC
Q 010534 465 NYSKKGIVQLREIFT-PGTLQVP 486 (508)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~~~~~~ 486 (508)
.-|..-.+++...+. ..|+..+
T Consensus 639 f~cLdp~l~iaa~Ls~k~PF~~~ 661 (924)
T KOG0920|consen 639 FGCLDPALTIAAALSFKSPFVSP 661 (924)
T ss_pred ccccchhhhHHHHhccCCCcccC
Confidence 556666666654444 3444333
No 56
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.8e-32 Score=293.85 Aligned_cols=283 Identities=18% Similarity=0.200 Sum_probs=195.3
Q ss_pred ccCCCCCCccc-cchHHHhc----CCceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHh----
Q 010534 57 FDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~----~~~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~---- 123 (508)
++| .+|+.|. +++.+... ...+.+++||||||||.+|+.+ +..+++++|++||++||.|+++.+++
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 377 4999999 99988642 2368999999999999997543 45677899999999999999998875
Q ss_pred CCCceeeeccccccc----------cCCCcEEEEcceecc---ccCCccEEEEccccccCCCCcChHHHHHHhcccCCce
Q 010534 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (508)
Q Consensus 124 ~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~ 190 (508)
+++++..++|..... .....++|+|+..+. .+++++++||||+|++.. .....+..+.....
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv-----~~~~~L~~~~~~~~ 601 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGV-----KQKEKLKELRTSVD 601 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccch-----hHHHHHHhcCCCCC
Confidence 367777777753211 124578889986654 358899999999999743 33344444433322
Q ss_pred EEEccCCcchHHHHHHhHcCC-cEEEEeeeec--CCCC-----CCCCcc-ccc-ccc-CCCCEEEEe-eHHHHHHHHHHH
Q 010534 191 HLCGDPAAVPLIQQILQVTGD-DVKVQSYERL--SPLV-----PLNVPL-GSF-SNI-QTGDCIVTF-SRHAIYRLKKAI 258 (508)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~~--~~~~-----~~~~~l-~~l-~~~-~~~~~iv~~-s~~~~~~l~~~L 258 (508)
.+..++++.+..-.+. ..+. ...+...... .+.. .....+ ..+ ..+ ..+.+++|+ +.+.++.+++.|
T Consensus 602 vL~~SATpiprtl~~~-l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 602 VLTLSATPIPRTLHMS-MSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred EEEEecCCCHHHHHHH-HhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 3333434343222221 1111 1111110000 0000 001111 111 122 334555555 789999999999
Q ss_pred Hhc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhh
Q 010534 259 ESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQI 336 (508)
Q Consensus 259 ~~~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr 336 (508)
++. ...++..+||+|++++|.++++.|++ |+.+|||||+++++|+|+| +++||+++... .+.++|.||
T Consensus 681 ~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~--------~gls~l~Qr 750 (926)
T TIGR00580 681 RELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQVLVCTTIIETGIDIPNANTIIIERADK--------FGLAQLYQL 750 (926)
T ss_pred HHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcccccccCCEEEEecCCC--------CCHHHHHHH
Confidence 885 34589999999999999999999999 9999999999999999997 99999887743 256789999
Q ss_pred hccCCCCCCCCCcEEEEEecCCC
Q 010534 337 AGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 337 ~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+||+||.|.. |.|+.+++++
T Consensus 751 ~GRvGR~g~~---g~aill~~~~ 770 (926)
T TIGR00580 751 RGRVGRSKKK---AYAYLLYPHQ 770 (926)
T ss_pred hcCCCCCCCC---eEEEEEECCc
Confidence 9999999987 9999987643
No 57
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-32 Score=258.12 Aligned_cols=296 Identities=20% Similarity=0.199 Sum_probs=214.0
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------------CCCEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------SSSGI 105 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------------~~~~i 105 (508)
.|++.+.+++.+. |+..+|-+|+ +||.+ +.+++++..|-||||||.+|+.++.+ +..++
T Consensus 25 gLD~RllkAi~~l-----G~ekpTlIQs~aIpla--LEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 25 GLDSRLLKAITKL-----GWEKPTLIQSSAIPLA--LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred CCCHHHHHHHHHh-----CcCCcchhhhcccchh--hcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 4899999999999 9999999999 99999 67999999999999999998655532 23679
Q ss_pred EEcchHHHHHHHHHHHHhCC------Cceeeecccccc------ccCCCcEEEEcceec---------cccCCccEEEEc
Q 010534 106 YCGPLRLLAWEVAKRLNKAN------VSCDLITGQERE------EVDGAKHRAVTVEMA---------DVVSDYDCAVID 164 (508)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~g------~~~~~~~g~~~~------~~~~~~~iv~T~e~~---------~~l~~~~~iViD 164 (508)
+++|||+||.|+++.+.++- +.+.-+...... ..+.+.++|+||..+ ..+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999988652 222222221111 123567888888332 335889999999
Q ss_pred cccccCCCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEE-------------EeeeecCCCCCCC
Q 010534 165 EIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKV-------------QSYERLSPLVPLN 228 (508)
Q Consensus 165 Eah~~~~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v-------------~~~~~~~~~~~~~ 228 (508)
|||.+.. .|+. +..+.-.++..-..++.+++..+.+..+.+.+-. ++.+ ..|+-.+....+.
T Consensus 178 EADLlls--fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 178 EADLLLS--FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred hhhhhhh--cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhH
Confidence 9999984 4665 3344444555444455555555555555443222 2211 1122111111111
Q ss_pred Ccccc---ccccCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc------
Q 010534 229 VPLGS---FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD------ 299 (508)
Q Consensus 229 ~~l~~---l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~------ 299 (508)
..+.. +.-+..+.+||++|.+.+..+.-.|++.|. +.++++|.||..-|..+++.|+. |-.+|+||||
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGi-ksciLNseLP~NSR~Hii~QFNk--G~YdivIAtD~s~~~~ 332 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGI-KSCILNSELPANSRCHIIEQFNK--GLYDIVIATDDSADGD 332 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCc-HhhhhcccccccchhhHHHHhhC--cceeEEEEccCccchh
Confidence 11111 122344555556699999999999999988 89999999999999999999999 9999999999
Q ss_pred -----------------------------cccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCc
Q 010534 300 -----------------------------AIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349 (508)
Q Consensus 300 -----------------------------~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~ 349 (508)
-+.+|||+ .|.+||++|+ |.+..+|+||+||++|.+..
T Consensus 333 ~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~---------P~t~~sYIHRvGRTaRg~n~--- 400 (569)
T KOG0346|consen 333 KLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF---------PETVTSYIHRVGRTARGNNK--- 400 (569)
T ss_pred hhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC---------CCchHHHHHhccccccCCCC---
Confidence 24579999 6999999999 67999999999999999987
Q ss_pred EEEEEecCCC
Q 010534 350 GEVTCLDSED 359 (508)
Q Consensus 350 G~~~~~~~~~ 359 (508)
|.+..+...+
T Consensus 401 GtalSfv~P~ 410 (569)
T KOG0346|consen 401 GTALSFVSPK 410 (569)
T ss_pred CceEEEecch
Confidence 8877665443
No 58
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=1.4e-32 Score=277.40 Aligned_cols=309 Identities=22% Similarity=0.282 Sum_probs=242.4
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccc
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~ 135 (508)
.+-+.|. ++--+ -+++.|+|+|.|.+|||.+| .+.+.+..++||..|-++|.+|-|+.+...--.||+.||+.
T Consensus 129 ~LDpFQ~~aI~Ci--dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDV 206 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI--DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDV 206 (1041)
T ss_pred ccCchHhhhhhhh--cCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecce
Confidence 3556666 66655 46899999999999999996 45556677999999999999999999986556899999997
Q ss_pred ccccCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHh
Q 010534 136 REEVDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 207 (508)
Q Consensus 136 ~~~~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~ 207 (508)
... +++..+|+|+|++.. ++.+..||+||+|-|-|.+||-.|...++-++ +.++++..++++++..+++.
T Consensus 207 TIn-P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP-~~vr~VFLSATiPNA~qFAe 284 (1041)
T KOG0948|consen 207 TIN-PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP-DNVRFVFLSATIPNARQFAE 284 (1041)
T ss_pred eeC-CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc-ccceEEEEeccCCCHHHHHH
Confidence 765 567788899988754 48899999999999999999999998887776 45777888889999988888
Q ss_pred HcCC----cEE-EEeeeecCCCCCCCCc-----cc-------------------cccc----------------------
Q 010534 208 VTGD----DVK-VQSYERLSPLVPLNVP-----LG-------------------SFSN---------------------- 236 (508)
Q Consensus 208 ~~~~----~~~-v~~~~~~~~~~~~~~~-----l~-------------------~l~~---------------------- 236 (508)
|.-. ++. |...+|+.|+.....+ +. .+..
T Consensus 285 WI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~ 364 (1041)
T KOG0948|consen 285 WICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGK 364 (1041)
T ss_pred HHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCC
Confidence 7432 222 2223455554422000 00 0000
Q ss_pred -------------c--CCC-C-EEEEeeHHHHHHHHHHHHhc--------------------------------------
Q 010534 237 -------------I--QTG-D-CIVTFSRHAIYRLKKAIESR-------------------------------------- 261 (508)
Q Consensus 237 -------------~--~~~-~-~iv~~s~~~~~~l~~~L~~~-------------------------------------- 261 (508)
+ ... . ++|.||+++|+.++-.+.+.
T Consensus 365 ~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPL 444 (1041)
T KOG0948|consen 365 GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPL 444 (1041)
T ss_pred CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHH
Confidence 0 001 1 33445999999988777553
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCC
Q 010534 262 GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (508)
Q Consensus 262 ~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRag 341 (508)
...++.+||||+-|--+.-++=.|.+ |-+++|+||.++++|+|.|++.|++....||||..+||+|.-+|+|+.||||
T Consensus 445 L~RGIGIHHsGLLPIlKE~IEILFqE--GLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAG 522 (1041)
T KOG0948|consen 445 LRRGIGIHHSGLLPILKEVIEILFQE--GLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAG 522 (1041)
T ss_pred HHhccccccccchHHHHHHHHHHHhc--cHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEeccccc
Confidence 12359999999999988889999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEecCCCH--HHHHhhhcCCCchhhh
Q 010534 342 RYGSKFPVGEVTCLDSEDL--PLLHKSLLEPSPMLES 376 (508)
Q Consensus 342 R~g~~~~~G~~~~~~~~~~--~~~~~~~~~~~~~i~~ 376 (508)
|.|.+ ..|+|+.+.++.+ +..+.++..+...+.+
T Consensus 523 RRG~D-drGivIlmiDekm~~~~ak~m~kG~aD~LnS 558 (1041)
T KOG0948|consen 523 RRGID-DRGIVILMIDEKMEPQVAKDMLKGSADPLNS 558 (1041)
T ss_pred ccCCC-CCceEEEEecCcCCHHHHHHHhcCCCcchhh
Confidence 99986 7799999988876 5666788877766543
No 59
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.98 E-value=4.8e-31 Score=294.33 Aligned_cols=283 Identities=16% Similarity=0.191 Sum_probs=196.9
Q ss_pred ccCCCCCCccc-cchHHHhc----CCceEEEEccCCCchHHHHHH----HHHcCCCEEEEcchHHHHHHHHHHHHh----
Q 010534 57 FDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~----~~~~~iv~~pTGsGKT~~~~~----~l~~~~~~i~l~P~r~La~q~~~~l~~---- 123 (508)
++| .+|+.|. +++.+... ...+++++||||||||.+|+. .+..++++++++||++||.|+++.+.+
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 367 6999999 99988552 237899999999999998643 345677899999999999999998874
Q ss_pred CCCceeeeccccccc----------cCCCcEEEEcceeccc---cCCccEEEEccccccCCCCcChHHHHHHhcccCCce
Q 010534 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (508)
Q Consensus 124 ~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~---l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~ 190 (508)
+++.+..++|..... ..+..++|+|++++.. +.+++++||||+|++. ......+..+.....
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG-----~~~~e~lk~l~~~~q 750 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFG-----VRHKERIKAMRADVD 750 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcc-----hhHHHHHHhcCCCCc
Confidence 356777777643211 1246789999976642 4789999999999974 333444444444444
Q ss_pred EEEccCCcchHHHHHHhH-cCCcEEEEeee-ecCCCCC-----CCCcc--cccccc-CCCCEEEEe-eHHHHHHHHHHHH
Q 010534 191 HLCGDPAAVPLIQQILQV-TGDDVKVQSYE-RLSPLVP-----LNVPL--GSFSNI-QTGDCIVTF-SRHAIYRLKKAIE 259 (508)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~-~~~~~~v~~~~-~~~~~~~-----~~~~l--~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~ 259 (508)
.++.++++.+....+... ..+...+.... ...+... ....+ ..+.++ ..+.+++|+ +++.++.+++.|+
T Consensus 751 vLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~ 830 (1147)
T PRK10689 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 (1147)
T ss_pred EEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHH
Confidence 445555545544333322 11211111100 0001100 00000 111222 234555555 7889999999998
Q ss_pred hcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhh
Q 010534 260 SRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIA 337 (508)
Q Consensus 260 ~~~-~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~ 337 (508)
+.. ..++..+||+|++++|.+++..|++ |+.+|||||+++++|+|+| +++||..+... .+.++|.||+
T Consensus 831 ~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~--------fglaq~~Qr~ 900 (1147)
T PRK10689 831 ELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERADH--------FGLAQLHQLR 900 (1147)
T ss_pred HhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEECchhhcccccccCCEEEEecCCC--------CCHHHHHHHh
Confidence 862 3489999999999999999999999 9999999999999999997 99999654432 2467899999
Q ss_pred ccCCCCCCCCCcEEEEEecCC
Q 010534 338 GRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 338 GRagR~g~~~~~G~~~~~~~~ 358 (508)
||+||.|.. |.|+.++++
T Consensus 901 GRvGR~g~~---g~a~ll~~~ 918 (1147)
T PRK10689 901 GRVGRSHHQ---AYAWLLTPH 918 (1147)
T ss_pred hccCCCCCc---eEEEEEeCC
Confidence 999999988 999988754
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=1e-30 Score=282.05 Aligned_cols=279 Identities=19% Similarity=0.254 Sum_probs=191.0
Q ss_pred cCCCCCCccc-cchHHHhcC----CceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHhC----
Q 010534 58 DFTDLTRPHT-WYPLARKKV----RKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNKA---- 124 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~----~~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~~---- 124 (508)
+| .||+.|+ +++.+.... ..+++++||||||||.+|+.+ +.++.+++|++||++||.|+++.++++
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 55 5999999 999886531 248999999999999997544 345668999999999999999998853
Q ss_pred CCceeeeccccccc----------cCCCcEEEEcceeccc---cCCccEEEEccccccCCCCcChHHHHHHhcccCCceE
Q 010534 125 NVSCDLITGQEREE----------VDGAKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191 (508)
Q Consensus 125 g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~---l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~ 191 (508)
|+++.+++|+.... ..+..++++|+..+.. +.+++++||||+|++...+ ...+.........
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~q-----r~~l~~~~~~~~i 412 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQ-----RLALREKGENPHV 412 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHH-----HHHHHhcCCCCCE
Confidence 78999999986521 1247788999866643 6899999999999985432 2223322222222
Q ss_pred EEccCCcchHHHHHHhHcCCcEEEEeeeecC----CCC-------CCCCccccccc-cC-CCCEEEEe-e--------HH
Q 010534 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLS----PLV-------PLNVPLGSFSN-IQ-TGDCIVTF-S--------RH 249 (508)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~----~~~-------~~~~~l~~l~~-~~-~~~~iv~~-s--------~~ 249 (508)
+..++++.+....+. ..++ ..+....... +.. .....+..+.+ .. .+.+++|+ . ..
T Consensus 413 L~~SATp~prtl~~~-~~g~-~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 413 LVMTATPIPRTLAMT-AYGD-LDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred EEEeCCCCHHHHHHH-HcCC-CceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 333333333222221 1222 1111111000 000 00011111111 12 33455554 2 34
Q ss_pred HHHHHHHHHHhcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCccccc
Q 010534 250 AIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRD 327 (508)
Q Consensus 250 ~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p 327 (508)
.+..+++.|.+.. ..++..+||+|++++|.++++.|++ |+.+|||||+++++|+|+| ++.||+++.++
T Consensus 491 ~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GiDip~v~~VIi~~~~r-------- 560 (681)
T PRK10917 491 SAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--GEIDILVATTVIEVGVDVPNATVMVIENAER-------- 560 (681)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECcceeeCcccCCCcEEEEeCCCC--------
Confidence 5667788887653 2589999999999999999999999 9999999999999999997 99999988743
Q ss_pred CChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 328 LTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 328 ~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
...+++.||+||+||.|.. |.|+.++.
T Consensus 561 ~gls~lhQ~~GRvGR~g~~---g~~ill~~ 587 (681)
T PRK10917 561 FGLAQLHQLRGRVGRGAAQ---SYCVLLYK 587 (681)
T ss_pred CCHHHHHHHhhcccCCCCc---eEEEEEEC
Confidence 2478899999999999987 99998875
No 61
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.98 E-value=2.4e-32 Score=257.22 Aligned_cols=294 Identities=18% Similarity=0.161 Sum_probs=216.5
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH-----H----------cCCCE
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL-----E----------SSSSG 104 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l-----~----------~~~~~ 104 (508)
++..+.+.++++ |+..||++|- -+|.+ +.+++.|-.+-||||||+++..++ . +++-+
T Consensus 177 FP~~~L~~lk~K-----GI~~PTpIQvQGlPvv--LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~g 249 (610)
T KOG0341|consen 177 FPKPLLRGLKKK-----GIVHPTPIQVQGLPVV--LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYG 249 (610)
T ss_pred CCHHHHHHHHhc-----CCCCCCceeecCcceE--eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCee
Confidence 677888889988 9999999999 99999 669999999999999999952222 1 24567
Q ss_pred EEEcchHHHHHHHHHHHHhC-------C---Cceeeeccccccc------cCCCcEEEEcceec-c-------ccCCccE
Q 010534 105 IYCGPLRLLAWEVAKRLNKA-------N---VSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDC 160 (508)
Q Consensus 105 i~l~P~r~La~q~~~~l~~~-------g---~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~-------~l~~~~~ 160 (508)
++++|+|+||.|.++-+..+ | +.+.+..|+.... ..+-.++|+||..+ + .+.-+++
T Consensus 250 LiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRy 329 (610)
T KOG0341|consen 250 LIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRY 329 (610)
T ss_pred EEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHH
Confidence 99999999999999877643 3 3455666654322 23667788998443 3 2467899
Q ss_pred EEEccccccCCCCcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHcC-CcEEEEeeeecC--CCCC---------
Q 010534 161 AVIDEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDVKVQSYERLS--PLVP--------- 226 (508)
Q Consensus 161 iViDEah~~~~~~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~~~--~~~~--------- 226 (508)
+++|||+++.|. ||. ...++-.+......++.+++...-++.++...- .++.+. ..|-. .++.
T Consensus 330 L~lDEADRmiDm--GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvN-VGRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 330 LTLDEADRMIDM--GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVN-VGRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred hhhhhHHHHhhc--cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEe-cccccccchhHHHHHHHHHh
Confidence 999999999987 654 334444455556666666666666666654322 222222 11111 0110
Q ss_pred CCC---ccccccccCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccc
Q 010534 227 LNV---PLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303 (508)
Q Consensus 227 ~~~---~l~~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~ 303 (508)
..+ .+..+.+..+.-.||+-.+.++..+.++|--.|. .++.+||+-.+++|...++.|+. |+-+||||||+++.
T Consensus 407 EaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGV-EavaIHGGKDQedR~~ai~afr~--gkKDVLVATDVASK 483 (610)
T KOG0341|consen 407 EAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGV-EAVAIHGGKDQEDRHYAIEAFRA--GKKDVLVATDVASK 483 (610)
T ss_pred hhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccc-eeEEeecCcchhHHHHHHHHHhc--CCCceEEEecchhc
Confidence 011 1133333334333333478999999999987777 89999999999999999999999 99999999999999
Q ss_pred ccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 304 GLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 304 Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|+|+| |.+|||||+ |-...+|.||+||+||.|.. |+.+++....
T Consensus 484 GLDFp~iqHVINyDM---------P~eIENYVHRIGRTGRsg~~---GiATTfINK~ 528 (610)
T KOG0341|consen 484 GLDFPDIQHVINYDM---------PEEIENYVHRIGRTGRSGKT---GIATTFINKN 528 (610)
T ss_pred cCCCccchhhccCCC---------hHHHHHHHHHhcccCCCCCc---ceeeeeeccc
Confidence 99997 999999999 66999999999999999998 9998887654
No 62
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=3.9e-31 Score=283.45 Aligned_cols=323 Identities=21% Similarity=0.269 Sum_probs=240.9
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHHcCCCEEEEcchHHHHHHHHHHHHh-CCCc---eeee
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLNK-ANVS---CDLI 131 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l~P~r~La~q~~~~l~~-~g~~---~~~~ 131 (508)
++-+.|+ ++-.+ ..+..|+++||||||||.++ ...+..+.+++|+.|.++|.+|.+..+.. +|-- ++++
T Consensus 119 ~LD~fQ~~a~~~L--er~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~ 196 (1041)
T COG4581 119 ELDPFQQEAIAIL--ERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLM 196 (1041)
T ss_pred CcCHHHHHHHHHH--hCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccce
Confidence 4556676 77766 46999999999999999995 34556677899999999999999999874 5533 5999
Q ss_pred ccccccccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHH
Q 010534 132 TGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (508)
Q Consensus 132 ~g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~ 203 (508)
||+.... .+++++|+|+|++. .+..+..||+||+|.+.|.+||..|...++.++.. +++++.++++++..
T Consensus 197 TGDv~IN-~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~-v~~v~LSATv~N~~ 274 (1041)
T COG4581 197 TGDVSIN-PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH-VRFVFLSATVPNAE 274 (1041)
T ss_pred ecceeeC-CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC-CcEEEEeCCCCCHH
Confidence 9998765 56888888888764 35889999999999999999999999999988754 56677778888888
Q ss_pred HHHhHcCC-----cEEEEeeeecCCCCCC--------------CC--------cccccc-------c-------------
Q 010534 204 QILQVTGD-----DVKVQSYERLSPLVPL--------------NV--------PLGSFS-------N------------- 236 (508)
Q Consensus 204 ~l~~~~~~-----~~~v~~~~~~~~~~~~--------------~~--------~l~~l~-------~------------- 236 (508)
++..|.+. ...+....|+.|+... .. ....+. +
T Consensus 275 EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~ 354 (1041)
T COG4581 275 EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRT 354 (1041)
T ss_pred HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccc
Confidence 88888652 2333333444443211 00 000000 0
Q ss_pred ----------------------cC-CCCEEEEeeHHHHHHHHHHHHhc----------------------------C---
Q 010534 237 ----------------------IQ-TGDCIVTFSRHAIYRLKKAIESR----------------------------G--- 262 (508)
Q Consensus 237 ----------------------~~-~~~~iv~~s~~~~~~l~~~L~~~----------------------------~--- 262 (508)
.. --.++|+||++.|+..+..+... +
T Consensus 355 ~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~ 434 (1041)
T COG4581 355 KALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPL 434 (1041)
T ss_pred cccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcc
Confidence 00 01245566999999877766521 0
Q ss_pred ---------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhH
Q 010534 263 ---------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 333 (508)
Q Consensus 263 ---------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~ 333 (508)
...+++||++|=|..|..+...|.. |-++|++||.+.+.|+|+|++.|++....||||...++++..+|
T Consensus 435 ~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~--GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy 512 (1041)
T COG4581 435 QILEISALLLRGIAVHHAGLLPAIKELVEELFQE--GLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEY 512 (1041)
T ss_pred cHHHHHHHHhhhhhhhccccchHHHHHHHHHHhc--cceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHH
Confidence 1247799999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCcEEEEEecCCC---HHHHHhhhcCCCchhhhcCCCCcHHHHHHHHh
Q 010534 334 KQIAGRAGRYGSKFPVGEVTCLDSED---LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR 391 (508)
Q Consensus 334 ~Qr~GRagR~g~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~ 391 (508)
.|+.|||||.|.+ ..|.++...... ......+.......+ +....+++..+..+..
T Consensus 513 ~QmsGRAGRRGlD-~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L-~s~f~~sy~milnll~ 571 (1041)
T COG4581 513 TQMSGRAGRRGLD-VLGTVIVIEPPFESEPSEAAGLASGKLDPL-RSQFRLSYNMILNLLR 571 (1041)
T ss_pred HHhhhhhcccccc-ccceEEEecCCCCCChHHHHHhhcCCCccc-hhheecchhHHHhhhh
Confidence 9999999999986 778887774332 233444444444433 3445555555554443
No 63
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-32 Score=265.52 Aligned_cols=296 Identities=21% Similarity=0.235 Sum_probs=196.6
Q ss_pred cCCCCCCccc-cchHHHhc-------CCceEEEEccCCCchHHHHHHHHH----cC----CCEEEEcchHHHHHHHHHHH
Q 010534 58 DFTDLTRPHT-WYPLARKK-------VRKVILHVGPTNSGKTHQALSRLE----SS----SSGIYCGPLRLLAWEVAKRL 121 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~-------~~~~~iv~~pTGsGKT~~~~~~l~----~~----~~~i~l~P~r~La~q~~~~l 121 (508)
+++.+.++|. .+|.+..- ..+++.|.||||||||++|..++. .. -++++++|+|+|+.|+++.+
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f 235 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF 235 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH
Confidence 8999999998 66665221 378999999999999999744432 22 26799999999999999999
Q ss_pred HhC----CCceeeecccccccc-----------CCCcEEEEccee-ccc--------cCCccEEEEccccccCCCCcCh-
Q 010534 122 NKA----NVSCDLITGQEREEV-----------DGAKHRAVTVEM-ADV--------VSDYDCAVIDEIQMLGCKTRGF- 176 (508)
Q Consensus 122 ~~~----g~~~~~~~g~~~~~~-----------~~~~~iv~T~e~-~~~--------l~~~~~iViDEah~~~~~~rg~- 176 (508)
.++ |+.|+.+.|+..... ....++|+||.. .++ +++++++||||||++.+. .+
T Consensus 236 ~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q--sfQ 313 (620)
T KOG0350|consen 236 KRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ--SFQ 313 (620)
T ss_pred HHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH--HHH
Confidence 865 677777777543211 134788999943 343 478999999999999863 22
Q ss_pred HHHHHHhcccCCc---------eEEEccCCcc--------------------------hHHHHHHhH---cCCcEEEE--
Q 010534 177 SFTRALLGICANE---------LHLCGDPAAV--------------------------PLIQQILQV---TGDDVKVQ-- 216 (508)
Q Consensus 177 ~~~~~ll~l~~~~---------~~~~~~~~~~--------------------------~~~~~l~~~---~~~~~~v~-- 216 (508)
.|.+.++.+..+. +....+..+. .....+... .+.-+.+.
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~ 393 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP 393 (620)
T ss_pred HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc
Confidence 2544443322221 1111100000 000111110 01001111
Q ss_pred ---eeeecCCCC-------CCCCcc--ccccccCCCCEEEEe--eHHHHHHHHHHHH-hcC--CCeEEEEcCCCCHHHHH
Q 010534 217 ---SYERLSPLV-------PLNVPL--GSFSNIQTGDCIVTF--SRHAIYRLKKAIE-SRG--KHLCSIVYGSLPPETRT 279 (508)
Q Consensus 217 ---~~~~~~~~~-------~~~~~l--~~l~~~~~~~~iv~~--s~~~~~~l~~~L~-~~~--~~~v~~lhg~l~~~~R~ 279 (508)
.|.-+..+. ....++ ..+....+..-++|| |...+.+++..|+ ..+ ..++..+.|+++.+.|.
T Consensus 394 ~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~ 473 (620)
T KOG0350|consen 394 LIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRY 473 (620)
T ss_pred cceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHH
Confidence 111011111 011111 222222344445555 6888999999887 322 23577799999999999
Q ss_pred HHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 280 RQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 280 ~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+.++.|.. |+++||||||+++||+|+ +++.||+|++ |.+..+|+||+||+||.|.. |.|+.+-..
T Consensus 474 k~l~~f~~--g~i~vLIcSD~laRGiDv~~v~~VINYd~---------P~~~ktyVHR~GRTARAgq~---G~a~tll~~ 539 (620)
T KOG0350|consen 474 KMLEKFAK--GDINVLICSDALARGIDVNDVDNVINYDP---------PASDKTYVHRAGRTARAGQD---GYAITLLDK 539 (620)
T ss_pred HHHHHHhc--CCceEEEehhhhhcCCcccccceEeecCC---------CchhhHHHHhhcccccccCC---ceEEEeecc
Confidence 99999999 999999999999999999 6999999999 77999999999999999998 999877554
Q ss_pred -CHHHHHhhhcC
Q 010534 359 -DLPLLHKSLLE 369 (508)
Q Consensus 359 -~~~~~~~~~~~ 369 (508)
+...|.++++.
T Consensus 540 ~~~r~F~klL~~ 551 (620)
T KOG0350|consen 540 HEKRLFSKLLKK 551 (620)
T ss_pred ccchHHHHHHHH
Confidence 44566666543
No 64
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=2.4e-30 Score=277.56 Aligned_cols=287 Identities=18% Similarity=0.257 Sum_probs=192.7
Q ss_pred HHhhcccCCCccccCCCCCCccc-cchHHHhcC----CceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHH
Q 010534 45 IRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKV----RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (508)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~----~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~ 115 (508)
+.+.+... +| .||+.|+ +++.+.... ..+.+++||||||||.+|+.++ ..+.+++|++||++||.
T Consensus 225 ~~~~~~~l-----pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 225 LTKFLASL-----PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHhC-----CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHH
Confidence 34444555 67 6999999 998886431 2368999999999999975443 45678999999999999
Q ss_pred HHHHHHHhC----CCceeeeccccccc----------cCCCcEEEEcceecc---ccCCccEEEEccccccCCCCcChHH
Q 010534 116 EVAKRLNKA----NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSF 178 (508)
Q Consensus 116 q~~~~l~~~----g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~rg~~~ 178 (508)
|+++.++++ |+++.+++|+.... ..+..++++|+..+. .+.+++++||||+|++...+|.
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~--- 375 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRK--- 375 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHH---
Confidence 999998853 78999999975432 124588899986654 3578999999999998654332
Q ss_pred HHHHhcccC---CceEEEccCCcchHHHHHHhHcCCcEEEEeeeec----CCC-------CCCCCccccccc-c-CCCCE
Q 010534 179 TRALLGICA---NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL----SPL-------VPLNVPLGSFSN-I-QTGDC 242 (508)
Q Consensus 179 ~~~ll~l~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~----~~~-------~~~~~~l~~l~~-~-~~~~~ 242 (508)
.+..... ....+..++++.+....+ ...++ +.+...... .+. ......+..+.+ . ..+.+
T Consensus 376 --~l~~~~~~~~~~~~l~~SATp~prtl~l-~~~~~-l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~ 451 (630)
T TIGR00643 376 --KLREKGQGGFTPHVLVMSATPIPRTLAL-TVYGD-LDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQA 451 (630)
T ss_pred --HHHHhcccCCCCCEEEEeCCCCcHHHHH-HhcCC-cceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcE
Confidence 2222111 122223333333322111 11111 111110000 000 000111111111 1 23345
Q ss_pred EEEe-e--------HHHHHHHHHHHHhc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccE
Q 010534 243 IVTF-S--------RHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (508)
Q Consensus 243 iv~~-s--------~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~ 311 (508)
++|+ . ...++.+++.|.+. ...++..+||+|++++|..+++.|++ |+.+|||||+++++|||+| ++.
T Consensus 452 ~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 452 YVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred EEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECceeecCcccCCCcE
Confidence 5554 2 25577788888764 34579999999999999999999999 9999999999999999997 999
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
||+++.++ .+.+++.||+||+||.|.. |.|+.++.
T Consensus 530 VIi~~~~r--------~gls~lhQ~~GRvGR~g~~---g~~il~~~ 564 (630)
T TIGR00643 530 MVIEDAER--------FGLSQLHQLRGRVGRGDHQ---SYCLLVYK 564 (630)
T ss_pred EEEeCCCc--------CCHHHHHHHhhhcccCCCC---cEEEEEEC
Confidence 99988743 2578999999999999987 99988873
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=1.5e-30 Score=262.95 Aligned_cols=267 Identities=15% Similarity=0.153 Sum_probs=175.6
Q ss_pred eEEEEccCCCchHHHHHHHHHc------CCCEEEEcchHHHHHHHHHHHHhC-CCceeeecccccc--------------
Q 010534 79 VILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLLAWEVAKRLNKA-NVSCDLITGQERE-------------- 137 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~------~~~~i~l~P~r~La~q~~~~l~~~-g~~~~~~~g~~~~-------------- 137 (508)
++++.||||||||++++.++.. .++++|++|+++|+.|+++++... |.+++.++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4799999999999998766542 357899999999999999999975 7666655553210
Q ss_pred ----------ccCCCcEEEEcceeccc-----c---------CCccEEEEccccccCCCCcChHHHHHHhcccCCceEEE
Q 010534 138 ----------EVDGAKHRAVTVEMADV-----V---------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193 (508)
Q Consensus 138 ----------~~~~~~~iv~T~e~~~~-----l---------~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~ 193 (508)
.....+++++|++.+.. + -..+++|+||+|.+.+..+++ +...+-.+.....+++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 01235688999865421 1 123799999999998653333 2222222222233444
Q ss_pred ccCCcc-hHHHHHHhHcCCcEEEEeee-----ec--CCC----C---CCCCccccccc-c-CCCCEEEEe-eHHHHHHHH
Q 010534 194 GDPAAV-PLIQQILQVTGDDVKVQSYE-----RL--SPL----V---PLNVPLGSFSN-I-QTGDCIVTF-SRHAIYRLK 255 (508)
Q Consensus 194 ~~~~~~-~~~~~l~~~~~~~~~v~~~~-----~~--~~~----~---~~~~~l~~l~~-~-~~~~~iv~~-s~~~~~~l~ 255 (508)
..+++. +.+.+++............. +. ... . .....+..+.+ . .++.++||+ +++.++.++
T Consensus 160 ~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~ 239 (358)
T TIGR01587 160 LMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFY 239 (358)
T ss_pred EEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHH
Confidence 444443 44444443322210000000 00 000 0 00001111111 1 345666666 899999999
Q ss_pred HHHHhcCC-CeEEEEcCCCCHHHHHHH----HHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCCh
Q 010534 256 KAIESRGK-HLCSIVYGSLPPETRTRQ----ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 330 (508)
Q Consensus 256 ~~L~~~~~-~~v~~lhg~l~~~~R~~~----~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~ 330 (508)
+.|++.+. ..+..+||++++.+|.+. ++.|++ |+.+|||||+++++|+|+|++.||++.. +.
T Consensus 240 ~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~ilvaT~~~~~GiDi~~~~vi~~~~-----------~~ 306 (358)
T TIGR01587 240 QQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVIVATQVIEASLDISADVMITELA-----------PI 306 (358)
T ss_pred HHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEEEECcchhceeccCCCEEEEcCC-----------CH
Confidence 99988654 369999999999999764 788998 9999999999999999999999998754 67
Q ss_pred hhHHhhhccCCCCCCCC-CcEEEEEecCCC
Q 010534 331 PEVKQIAGRAGRYGSKF-PVGEVTCLDSED 359 (508)
Q Consensus 331 ~~~~Qr~GRagR~g~~~-~~G~~~~~~~~~ 359 (508)
.+|+||+||+||.|.+. ..|.++.++...
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 89999999999998753 246777776544
No 66
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.9e-31 Score=277.27 Aligned_cols=324 Identities=21% Similarity=0.255 Sum_probs=242.7
Q ss_pred ccccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----C----------
Q 010534 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S---------- 101 (508)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----~---------- 101 (508)
.+..++.+-..++. |...++.+|. .+..+. ....+++++||||+|||.+|+..+++ +
T Consensus 292 ~iselP~Wnq~aF~-------g~~sLNrIQS~v~daAl-~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~ 363 (1674)
T KOG0951|consen 292 KISELPKWNQPAFF-------GKQSLNRIQSKVYDAAL-RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLA 363 (1674)
T ss_pred eecCCcchhhhhcc-------cchhhhHHHHHHHHHHh-cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecc
Confidence 33444444555554 4466999999 667664 45788999999999999998655532 1
Q ss_pred -CCEEEEcchHHHHHHHHHHHH----hCCCceeeecccccc---ccCCCcEEEEcceecccc----------CCccEEEE
Q 010534 102 -SSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQERE---EVDGAKHRAVTVEMADVV----------SDYDCAVI 163 (508)
Q Consensus 102 -~~~i~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~---~~~~~~~iv~T~e~~~~l----------~~~~~iVi 163 (508)
.+++|++|.++|+.++...+. .+|+.|.-.||+... ...++.++++|||.++.+ +-++++||
T Consensus 364 ~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlII 443 (1674)
T KOG0951|consen 364 PFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLII 443 (1674)
T ss_pred cceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhh
Confidence 268999999999999987554 579999999998653 345889999999999754 45899999
Q ss_pred ccccccCCCCcChHHHHHHhccc------CCceEEEccCCcchHHHHHHhHcCCcE----EEEeeeecCCCCCC------
Q 010534 164 DEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVPLIQQILQVTGDDV----KVQSYERLSPLVPL------ 227 (508)
Q Consensus 164 DEah~~~~~~rg~~~~~~ll~l~------~~~~~~~~~~~~~~~~~~l~~~~~~~~----~v~~~~~~~~~~~~------ 227 (508)
||+|++.| +||.....+..... ....++.|.+++.|+..++....+... .....+|+.|+...
T Consensus 444 DEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 444 DEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITE 522 (1674)
T ss_pred hhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEecccc
Confidence 99999987 79999765553322 346788999999998888776544433 33445677776543
Q ss_pred CCcccc------------ccccCCCCEEEEe-eHHHHHHHHHHHHhc---------------------------------
Q 010534 228 NVPLGS------------FSNIQTGDCIVTF-SRHAIYRLKKAIESR--------------------------------- 261 (508)
Q Consensus 228 ~~~l~~------------l~~~~~~~~iv~~-s~~~~~~l~~~L~~~--------------------------------- 261 (508)
+..+.. +....++.++||. ||+++.+.++.++..
T Consensus 523 k~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 523 KKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 111111 1223566777777 999998888888742
Q ss_pred ---CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcc--cccCChhhHHhh
Q 010534 262 ---GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQI 336 (508)
Q Consensus 262 ---~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~--~~p~s~~~~~Qr 336 (508)
-..++++||+||+..+|...++.|.+ |+++|+|+|..++.|+|+|.+.||.-+...||+.. ..++++.+.+||
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qm 680 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQM 680 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHH
Confidence 12258999999999999999999999 99999999999999999999999999999999974 455799999999
Q ss_pred hccCCCCCCC-CCcEEEEEecCCCHHHHHhhhcCCCc
Q 010534 337 AGRAGRYGSK-FPVGEVTCLDSEDLPLLHKSLLEPSP 372 (508)
Q Consensus 337 ~GRagR~g~~-~~~G~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
.|||||.+.+ ++.|++++-++ ++.++.+.++.+.|
T Consensus 681 lgragrp~~D~~gegiiit~~s-e~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 681 LGRAGRPQYDTCGEGIIITDHS-ELQYYLSLMNQQLP 716 (1674)
T ss_pred HhhcCCCccCcCCceeeccCch-HhhhhHHhhhhcCC
Confidence 9999999876 44455543332 33555555555544
No 67
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.7e-31 Score=273.21 Aligned_cols=307 Identities=21% Similarity=0.299 Sum_probs=236.8
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH---H-cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccc
Q 010534 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL---E-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l---~-~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~ 136 (508)
+-..|. ++-.+ .++..|+|.|+|.+|||.+|-.++ . ...+++|..|-++|.+|-++.|++---.++++||+..
T Consensus 298 lD~FQk~Ai~~l--erg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvq 375 (1248)
T KOG0947|consen 298 LDTFQKEAIYHL--ERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQ 375 (1248)
T ss_pred ccHHHHHHHHHH--HcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeeccee
Confidence 455666 77666 469999999999999999964333 2 2348899999999999999999964445679999976
Q ss_pred cccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhH
Q 010534 137 EEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (508)
Q Consensus 137 ~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~ 208 (508)
.. +++..+++|+|++. .++.++.||+||+|-+.|.+||..|...++-+++. +.++..++++++.-+++.|
T Consensus 376 in-PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H-V~~IlLSATVPN~~EFA~W 453 (1248)
T KOG0947|consen 376 IN-PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH-VNFILLSATVPNTLEFADW 453 (1248)
T ss_pred eC-CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecccc-ceEEEEeccCCChHHHHHH
Confidence 54 56788889998774 45889999999999999999999999999988865 4555555788888889999
Q ss_pred cCCcE----EE-EeeeecCCCCCCC---Cc-----------c--------ccc---------------------------
Q 010534 209 TGDDV----KV-QSYERLSPLVPLN---VP-----------L--------GSF--------------------------- 234 (508)
Q Consensus 209 ~~~~~----~v-~~~~~~~~~~~~~---~~-----------l--------~~l--------------------------- 234 (508)
.|+.- .| ....|+.|++... .. + ..+
T Consensus 454 IGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~ 533 (1248)
T KOG0947|consen 454 IGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKT 533 (1248)
T ss_pred hhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcC
Confidence 88622 12 1123333332110 00 0 000
Q ss_pred --------------------------cccCCC----CEEEEeeHHHHHHHHHHHHhc-----------------------
Q 010534 235 --------------------------SNIQTG----DCIVTFSRHAIYRLKKAIESR----------------------- 261 (508)
Q Consensus 235 --------------------------~~~~~~----~~iv~~s~~~~~~l~~~L~~~----------------------- 261 (508)
..+.+. -++|+||++.|++.++.|...
T Consensus 534 ~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk 613 (1248)
T KOG0947|consen 534 NYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLK 613 (1248)
T ss_pred CCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcC
Confidence 000000 135566999999999988754
Q ss_pred ---------------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccc
Q 010534 262 ---------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326 (508)
Q Consensus 262 ---------------~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~ 326 (508)
...++++|||++=|-.+.-++-.|.. |-++||+||-+++||||.|.++||+..+.|.||..++
T Consensus 614 ~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr--GlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR 691 (1248)
T KOG0947|consen 614 GEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR--GLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFR 691 (1248)
T ss_pred hhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc--CceEEEeehhhhhhhcCCCceeEEeeehhhccCccee
Confidence 12359999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCChhhHHhhhccCCCCCCCCCcEEEEEecCCC---HHHHHhhhcCCCchhh
Q 010534 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED---LPLLHKSLLEPSPMLE 375 (508)
Q Consensus 327 p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~i~ 375 (508)
.+.+-+|.|++|||||.|-+ ..|.++.+..+. .+.+++++-.....+.
T Consensus 692 ~L~PGEytQMAGRAGRRGlD-~tGTVii~~~~~vp~~a~l~~li~G~~~~L~ 742 (1248)
T KOG0947|consen 692 ELLPGEYTQMAGRAGRRGLD-ETGTVIIMCKDSVPSAATLKRLIMGGPTRLE 742 (1248)
T ss_pred ecCChhHHhhhccccccccC-cCceEEEEecCCCCCHHHHhhHhcCCCchhh
Confidence 99999999999999999986 778888877654 4677887776665443
No 68
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.8e-30 Score=269.08 Aligned_cols=295 Identities=17% Similarity=0.209 Sum_probs=220.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc------------CCCEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------SSSGIY 106 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~------------~~~~i~ 106 (508)
+++..+...+++. ++..++++|. ++|.+ +.+++||.+|.||||||..++.++.. ++-+++
T Consensus 371 gl~~~il~tlkkl-----~y~k~~~IQ~qAiP~I--msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 371 GLSSKILETLKKL-----GYEKPTPIQAQAIPAI--MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred CchHHHHHHHHHh-----cCCCCcchhhhhcchh--ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 4677888888888 9999999999 99999 88999999999999999998544432 234688
Q ss_pred EcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcc-eeccc----------cCCccEEEEcc
Q 010534 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTV-EMADV----------VSDYDCAVIDE 165 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~-e~~~~----------l~~~~~iViDE 165 (508)
++|||+|+.|+.+.++.+ |+.+..++|+.... .++..++|||+ +|++. +.++.++|+||
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999999998854 88888888876543 24789999999 44443 46777999999
Q ss_pred ccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc-CCcEEEEee------------eecCCCCCCCCccc
Q 010534 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSY------------ERLSPLVPLNVPLG 232 (508)
Q Consensus 166 ah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~------------~~~~~~~~~~~~l~ 232 (508)
||.+.+....+..+.++-.+......+..+.+....+..+.... ..++.+..- .+..+. ....+.
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~--e~eKf~ 601 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI--ENEKFL 601 (997)
T ss_pred hhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC--chHHHH
Confidence 99999875555556655556554444444444333344443221 111221111 111110 111111
Q ss_pred ccc-----ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccc
Q 010534 233 SFS-----NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (508)
Q Consensus 233 ~l~-----~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gid 306 (508)
.+. ....++.|||. +...|..+.+.|.+.+. .+..+||+.++.+|...++.|++ +..++||||+++++|+|
T Consensus 602 kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~-~~~slHGgv~q~dR~sti~dfK~--~~~~LLvaTsvvarGLd 678 (997)
T KOG0334|consen 602 KLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGY-NCDSLHGGVDQHDRSSTIEDFKN--GVVNLLVATSVVARGLD 678 (997)
T ss_pred HHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCc-chhhhcCCCchHHHHhHHHHHhc--cCceEEEehhhhhcccc
Confidence 111 12477788887 68999999999998777 77779999999999999999999 99999999999999999
Q ss_pred cc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 307 ip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+. +..||+|+. |--...|.||+||+||.|.. |.+++|...
T Consensus 679 v~~l~Lvvnyd~---------pnh~edyvhR~gRTgragrk---g~AvtFi~p 719 (997)
T KOG0334|consen 679 VKELILVVNYDF---------PNHYEDYVHRVGRTGRAGRK---GAAVTFITP 719 (997)
T ss_pred cccceEEEEccc---------chhHHHHHHHhcccccCCcc---ceeEEEeCh
Confidence 95 999999999 55788899999999999998 788777655
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=7.8e-29 Score=259.40 Aligned_cols=279 Identities=17% Similarity=0.107 Sum_probs=186.2
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH----HHcCC-CEEEEcchHHHHHHHHHHHHhCCC----cee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSS-SGIYCGPLRLLAWEVAKRLNKANV----SCD 129 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~----l~~~~-~~i~l~P~r~La~q~~~~l~~~g~----~~~ 129 (508)
..|+++|. +++.+. .+++.++++|||+|||.++... +...+ ++++++||++|+.|+.+++.+++. .+.
T Consensus 113 ~~~r~~Q~~av~~~l--~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGL--KNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHH--hcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 57999999 888874 4778899999999999986432 22333 789999999999999999997642 232
Q ss_pred eeccccccccCCCcEEEEcceecc-----ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcch----
Q 010534 130 LITGQEREEVDGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP---- 200 (508)
Q Consensus 130 ~~~g~~~~~~~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~---- 200 (508)
.+.|+.... .+..++|+|++.+. ++.++++||+||||++... .+..++..+.... .++|.+++..
T Consensus 191 ~i~~g~~~~-~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~-~~lGLTATp~~~~~ 264 (501)
T PHA02558 191 KIYSGTAKD-TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK-FKFGLTGSLRDGKA 264 (501)
T ss_pred EEecCcccC-CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch----hHHHHHHhhhccc-eEEEEeccCCCccc
Confidence 333333222 35788999986542 3578999999999999743 3444444443222 2223222221
Q ss_pred HHHHHHhHcCCc-----------------EEEEee-eecCCC--C-CC----C-------------Cccc-cccc--cCC
Q 010534 201 LIQQILQVTGDD-----------------VKVQSY-ERLSPL--V-PL----N-------------VPLG-SFSN--IQT 239 (508)
Q Consensus 201 ~~~~l~~~~~~~-----------------~~v~~~-~~~~~~--~-~~----~-------------~~l~-~l~~--~~~ 239 (508)
....+...+|.. +.+... .+..+. . .. . ..+. .... ...
T Consensus 265 ~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~ 344 (501)
T PHA02558 265 NILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKG 344 (501)
T ss_pred cHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence 011112222221 111100 000000 0 00 0 0000 0001 123
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEec-cccccccccc-ccEEEEcc
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT-~~~~~Gidip-v~~VI~~~ 316 (508)
+..+|+| +.++++.+++.|++.+. ++..+||+++.++|..+.+.|++ |+..||||| +++++|+|+| +++||++.
T Consensus 345 ~~~lV~~~~~~h~~~L~~~L~~~g~-~v~~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 345 ENTFVMFKYVEHGKPLYEMLKKVYD-KVYYVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEec
Confidence 4455555 78899999999999877 89999999999999999999998 888899998 8999999997 99999887
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
.++ |...|+||+||++|.+.++....++-+.++
T Consensus 422 p~~---------s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 422 PSK---------SKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred CCc---------chhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 743 889999999999999886555666666553
No 70
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.3e-29 Score=247.03 Aligned_cols=297 Identities=16% Similarity=0.158 Sum_probs=207.1
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cC--------CCEEEE
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--------SSGIYC 107 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~--------~~~i~l 107 (508)
.++.+.+.+... +|..++++|. ++|.+ +.+++++.++|||||||+++..++. .. -+++|+
T Consensus 143 ~~~~ll~nl~~~-----~F~~Pt~iq~~aipvf--l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il 215 (593)
T KOG0344|consen 143 MNKRLLENLQEL-----GFDEPTPIQKQAIPVF--LEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALIL 215 (593)
T ss_pred hcHHHHHhHhhC-----CCCCCCcccchhhhhh--hcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEe
Confidence 567778888888 9999999999 99999 6799999999999999999744442 11 256899
Q ss_pred cchHHHHHHHHHHHHhCCCc------eeeecccccc-------ccCCCcEEEEcceec----------cccCCccEEEEc
Q 010534 108 GPLRLLAWEVAKRLNKANVS------CDLITGQERE-------EVDGAKHRAVTVEMA----------DVVSDYDCAVID 164 (508)
Q Consensus 108 ~P~r~La~q~~~~l~~~g~~------~~~~~g~~~~-------~~~~~~~iv~T~e~~----------~~l~~~~~iViD 164 (508)
.|+|+|+.|++..+.++.+. +......... ......+++.||-.+ ..+..+.++|+|
T Consensus 216 ~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~d 295 (593)
T KOG0344|consen 216 SPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVD 295 (593)
T ss_pred cchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeec
Confidence 99999999999999987532 1111111000 011345677887221 135889999999
Q ss_pred cccccCCCCcChH--HHHHHhcccCCceEE-EccCCcchHHHHHHhHcCCcEEEEee-eecCC-------CCCC----CC
Q 010534 165 EIQMLGCKTRGFS--FTRALLGICANELHL-CGDPAAVPLIQQILQVTGDDVKVQSY-ERLSP-------LVPL----NV 229 (508)
Q Consensus 165 Eah~~~~~~rg~~--~~~~ll~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~-------~~~~----~~ 229 (508)
|++.+.+. -++. +.+++.......+++ +.+.+....+++++...-.......+ .+... +... .+
T Consensus 296 EaD~lfe~-~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K 374 (593)
T KOG0344|consen 296 EADLLFEP-EFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGK 374 (593)
T ss_pred hHHhhhCh-hhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhH
Confidence 99999865 1332 345554444444443 23333334555555443322211111 11100 0000 11
Q ss_pred cc---ccccc-cCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccc
Q 010534 230 PL---GSFSN-IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (508)
Q Consensus 230 ~l---~~l~~-~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gi 305 (508)
.+ ..+.. .++...|++-+.+.+.+|...|......++.++||..++.+|.+.+++|+. |++.||+||+++++|+
T Consensus 375 ~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~--g~IwvLicTdll~RGi 452 (593)
T KOG0344|consen 375 LLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI--GKIWVLICTDLLARGI 452 (593)
T ss_pred HHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc--cCeeEEEehhhhhccc
Confidence 11 11111 233334444499999999999965555589999999999999999999999 9999999999999999
Q ss_pred cc-cccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 306 NL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 306 di-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|+ ++..||++|. |-+..+|+||+||+||.|+. |.++++|+++
T Consensus 453 Df~gvn~VInyD~---------p~s~~syihrIGRtgRag~~---g~Aitfytd~ 495 (593)
T KOG0344|consen 453 DFKGVNLVINYDF---------PQSDLSYIHRIGRTGRAGRS---GKAITFYTDQ 495 (593)
T ss_pred cccCcceEEecCC---------CchhHHHHHHhhccCCCCCC---cceEEEeccc
Confidence 99 7999999999 55999999999999999998 9999888764
No 71
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.5e-28 Score=240.73 Aligned_cols=283 Identities=20% Similarity=0.208 Sum_probs=183.1
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----Hc-CCCEEEEcchHHHHHHHHHHHHh-CCCc---
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRLLAWEVAKRLNK-ANVS--- 127 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~-~~~~i~l~P~r~La~q~~~~l~~-~g~~--- 127 (508)
+..+++.+|. ....+. .+|++++.|||-|||++|...+ .. .+++++++||+-|+.|.++.+.+ .|++
T Consensus 12 ~~ie~R~YQ~~i~a~al---~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKAL---FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHh---hcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 3456777777 444442 4699999999999999975433 23 34699999999999999999986 4664
Q ss_pred eeeeccccccc-----cCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEc
Q 010534 128 CDLITGQEREE-----VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194 (508)
Q Consensus 128 ~~~~~g~~~~~-----~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~ 194 (508)
+..++|..... +....++++||+.... +..+.++|+||||+-..+ ..+.+..-.....++..+++|
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGn-yAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGN-YAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCc-chHHHHHHHHHHhccCceEEE
Confidence 45778865433 4578999999976532 378999999999997531 122221111111122222222
Q ss_pred cCC----cchHHHHHHhHcCCc-EEE--------Eee-------------------------------------------
Q 010534 195 DPA----AVPLIQQILQVTGDD-VKV--------QSY------------------------------------------- 218 (508)
Q Consensus 195 ~~~----~~~~~~~l~~~~~~~-~~v--------~~~------------------------------------------- 218 (508)
.++ ...-+..++...|-. +.+ ..|
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 211 112222222222210 000 000
Q ss_pred ---------------------------------------------------------------e--ec------------
Q 010534 219 ---------------------------------------------------------------E--RL------------ 221 (508)
Q Consensus 219 ---------------------------------------------------------------~--~~------------ 221 (508)
. ..
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 0 00
Q ss_pred -------------CCCCCCCCccccc-------cccCCCCEEEEe--eHHHHHHHHHHHHhcCCCeEEEEc--------C
Q 010534 222 -------------SPLVPLNVPLGSF-------SNIQTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVY--------G 271 (508)
Q Consensus 222 -------------~~~~~~~~~l~~l-------~~~~~~~~iv~~--s~~~~~~l~~~L~~~~~~~v~~lh--------g 271 (508)
.........+..+ .+..++..+++| .|+.++.+.+.|.+.+......+- .
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccc
Confidence 0000000001001 011234455555 499999999999998773222333 4
Q ss_pred CCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcE
Q 010534 272 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350 (508)
Q Consensus 272 ~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G 350 (508)
||+++++.++++.|++ |+.+|||||+++|.|+||| ++.||+|+.. .|...++||.||+||... |
T Consensus 408 GMsQkeQ~eiI~~Fr~--Ge~nVLVaTSVgEEGLDIp~vDlVifYEpv---------pSeIR~IQR~GRTGR~r~----G 472 (542)
T COG1111 408 GMSQKEQKEIIDQFRK--GEYNVLVATSVGEEGLDIPEVDLVIFYEPV---------PSEIRSIQRKGRTGRKRK----G 472 (542)
T ss_pred ccCHHHHHHHHHHHhc--CCceEEEEcccccccCCCCcccEEEEecCC---------cHHHHHHHhhCccccCCC----C
Confidence 7999999999999999 9999999999999999998 9999999874 388999999999999976 7
Q ss_pred EEEEecCCC
Q 010534 351 EVTCLDSED 359 (508)
Q Consensus 351 ~~~~~~~~~ 359 (508)
.++.+..++
T Consensus 473 rv~vLvt~g 481 (542)
T COG1111 473 RVVVLVTEG 481 (542)
T ss_pred eEEEEEecC
Confidence 887776544
No 72
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.1e-28 Score=232.00 Aligned_cols=310 Identities=16% Similarity=0.172 Sum_probs=219.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHcC-------CCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~-------~~~i~l~P~r 111 (508)
.|.+.+++.+... ||..|+.+|+ +++.+ .++.++++.+++|+|||.++...++.. ..+++++|+|
T Consensus 32 ~L~e~LLrgiy~y-----GFekPSaIQqraI~p~--i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 32 NLKESLLRGIYAY-----GFEKPSAIQQRAILPC--IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred CCCHHHHhHHHhh-----ccCCchHHHhcccccc--ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 4788999999999 9999999999 77666 569999999999999999975555433 3678899999
Q ss_pred HHHHHHHHHHHhC----CCceeeecccccccc-------CCCcEEEEcc----eecc----ccCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREEV-------DGAKHRAVTV----EMAD----VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~~-------~~~~~iv~T~----e~~~----~l~~~~~iViDEah~~~~~ 172 (508)
+||.|+.+....+ +..+..+.|+..... ....+++.|| .+++ ....+.+.|+|||+++..
T Consensus 105 eLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs- 183 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS- 183 (397)
T ss_pred HHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-
Confidence 9999999887765 456666666543321 1345667777 3332 236799999999999984
Q ss_pred CcChH--HHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEEEee-------------eecCCCCCCCCccccccc
Q 010534 173 TRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQSY-------------ERLSPLVPLNVPLGSFSN 236 (508)
Q Consensus 173 ~rg~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~-------------~~~~~~~~~~~~l~~l~~ 236 (508)
+|+. ...+.-.++.+...++.+++...-+..+.+.... ...+..- .+..+-. +...+..+.+
T Consensus 184 -~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~ 261 (397)
T KOG0327|consen 184 -RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR 261 (397)
T ss_pred -cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH
Confidence 4665 3344444554443344444443333333333222 2221111 0011111 1122222333
Q ss_pred cCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEc
Q 010534 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFS 315 (508)
Q Consensus 237 ~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~ 315 (508)
...+.++||++++.+..+...|...+. .+..+||.|.+.+|..+.+.|+. |..+|||.|+.+++|+|+ .++.||++
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~~~-~~s~~~~d~~q~~R~~~~~ef~~--gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAHGF-TVSAIHGDMEQNERDTLMREFRS--GSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhCCc-eEEEeecccchhhhhHHHHHhhc--CCceEEeeccccccccchhhcceeeee
Confidence 234455666699999999999977666 89999999999999999999999 999999999999999999 69999999
Q ss_pred ccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC-H---HHHHhhhcCCCchh
Q 010534 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-L---PLLHKSLLEPSPML 374 (508)
Q Consensus 316 ~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~-~---~~~~~~~~~~~~~i 374 (508)
+. |....+|+||+||+||.|.+ |.++.+..++ . ..+.++...+..++
T Consensus 339 dl---------P~~~~~yihR~gr~gr~grk---g~~in~v~~~d~~~lk~ie~~y~~~i~e~ 389 (397)
T KOG0327|consen 339 DL---------PARKENYIHRIGRAGRFGRK---GVAINFVTEEDVRDLKDIEKFYNTPIEEL 389 (397)
T ss_pred cc---------ccchhhhhhhcccccccCCC---ceeeeeehHhhHHHHHhHHHhcCCcceec
Confidence 99 66999999999999999998 8887776553 2 34444444444443
No 73
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=1.6e-29 Score=251.64 Aligned_cols=296 Identities=14% Similarity=0.123 Sum_probs=215.9
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHH---cCCCEEEEcchHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLE---SSSSGIYCGPLRL 112 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~---~~~~~i~l~P~r~ 112 (508)
+...+...+++. +|..++++|. +||.++. +-+.||.+..|+|||+++ ++.+. .+...++++|||+
T Consensus 32 l~r~vl~glrrn-----~f~~ptkiQaaAIP~~~~--kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTRE 104 (980)
T KOG4284|consen 32 LWREVLLGLRRN-----AFALPTKIQAAAIPAIFS--KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTRE 104 (980)
T ss_pred HHHHHHHHHHhh-----cccCCCchhhhhhhhhhc--ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchh
Confidence 456777888888 9999999999 9999955 889999999999999995 44442 2357799999999
Q ss_pred HHHHHHHHHHhC-----CCceeeeccccccc-----cCCCcEEEEcceeccc--------cCCccEEEEccccccCCC-C
Q 010534 113 LAWEVAKRLNKA-----NVSCDLITGQEREE-----VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCK-T 173 (508)
Q Consensus 113 La~q~~~~l~~~-----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~-~ 173 (508)
+|.|+.+.+.+. |.+|.+..|+.... ...+.++|.||..+.. ..+++++|+|||+.+.+. .
T Consensus 105 iaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s 184 (980)
T KOG4284|consen 105 IAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES 184 (980)
T ss_pred hhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh
Confidence 999999998854 78999999986443 3367799999955432 388999999999999762 1
Q ss_pred cChHHHHHHhcccCCceEEEccCCcchHH-HHHHhHcCCcEEEEee------------eecCCCC---C-----CCCcc-
Q 010534 174 RGFSFTRALLGICANELHLCGDPAAVPLI-QQILQVTGDDVKVQSY------------ERLSPLV---P-----LNVPL- 231 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~v~~~------------~~~~~~~---~-----~~~~l- 231 (508)
.......++-.+++....+..+++-..++ ..+.+...+...|... ....+.. . +...+
T Consensus 185 fq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~ 264 (980)
T KOG4284|consen 185 FQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLT 264 (980)
T ss_pred HHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHH
Confidence 12223344455666554444443333333 3333444333322211 1111000 0 00111
Q ss_pred ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-c
Q 010534 232 GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (508)
Q Consensus 232 ~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v 309 (508)
..+.+++=...+||+ +...|+.++..|...|. .+.++.|.|++.+|...++.++. -..+|||+||.-++|||-| +
T Consensus 265 ~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~-d~~~ISgaM~Q~~Rl~a~~~lr~--f~~rILVsTDLtaRGIDa~~v 341 (980)
T KOG4284|consen 265 HVFKSIPYVQALVFCDQISRAEPIATHLKSSGL-DVTFISGAMSQKDRLLAVDQLRA--FRVRILVSTDLTARGIDADNV 341 (980)
T ss_pred HHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC-CeEEeccccchhHHHHHHHHhhh--ceEEEEEecchhhccCCcccc
Confidence 112223334456666 68889999999998887 99999999999999999999999 8899999999999999996 9
Q ss_pred cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 310 ~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
..||+.|. |.+-..|.||+|||||+|.. |..+++..+
T Consensus 342 NLVVNiD~---------p~d~eTY~HRIGRAgRFG~~---G~aVT~~~~ 378 (980)
T KOG4284|consen 342 NLVVNIDA---------PADEETYFHRIGRAGRFGAH---GAAVTLLED 378 (980)
T ss_pred ceEEecCC---------CcchHHHHHHhhhccccccc---ceeEEEecc
Confidence 99999999 77999999999999999987 777666543
No 74
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=4.9e-28 Score=257.80 Aligned_cols=268 Identities=16% Similarity=0.135 Sum_probs=171.9
Q ss_pred cCCCCCCccc-cchHHHhcCCc-eEEEEccCCCchHHHHHHHHH---cC---C-CEEEEcchHHHHHHHHHHHHhCC---
Q 010534 58 DFTDLTRPHT-WYPLARKKVRK-VILHVGPTNSGKTHQALSRLE---SS---S-SGIYCGPLRLLAWEVAKRLNKAN--- 125 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~-~~iv~~pTGsGKT~~~~~~l~---~~---~-~~i~l~P~r~La~q~~~~l~~~g--- 125 (508)
||. |+++|+ ++|.+. .++ ++++.+|||||||.++..++. .+ . +.+|++|||+|+.|+++.+.+++
T Consensus 13 G~~-PtpiQ~~~i~~il--~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFV--AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCC-CCHHHHHHHHHHH--cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 677 999999 999985 465 688889999999986433332 11 2 33567899999999998887542
Q ss_pred ------------------------Cceeeeccccccc------cCCCcEEEEcceecc--------------------cc
Q 010534 126 ------------------------VSCDLITGQEREE------VDGAKHRAVTVEMAD--------------------VV 155 (508)
Q Consensus 126 ------------------------~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------------------~l 155 (508)
+++..++|+.... ..+..++|+|++++. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 5567778875432 235568888874431 14
Q ss_pred CCccEEEEccccccCCCCcChHH-HHHHhcc---cCC--ceEEEccCCcc-hHHHHHHhHcC-CcE--EEEeee------
Q 010534 156 SDYDCAVIDEIQMLGCKTRGFSF-TRALLGI---CAN--ELHLCGDPAAV-PLIQQILQVTG-DDV--KVQSYE------ 219 (508)
Q Consensus 156 ~~~~~iViDEah~~~~~~rg~~~-~~~ll~l---~~~--~~~~~~~~~~~-~~~~~l~~~~~-~~~--~v~~~~------ 219 (508)
+++.++|+|||| .++ |+.- ...++.. +.. ..+++..+++. .-+..+..... ... .+....
T Consensus 170 ~~v~~LVLDEAD--Ld~--gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki 245 (844)
T TIGR02621 170 GQDALIVHDEAH--LEP--AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKI 245 (844)
T ss_pred ccceEEEEehhh--hcc--ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccce
Confidence 789999999999 333 5542 2333332 221 12333333332 22222222211 111 111100
Q ss_pred -ecCCCCCCC---Ccccc---ccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHH-----HHHHHhc
Q 010534 220 -RLSPLVPLN---VPLGS---FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT-----RQATRFN 286 (508)
Q Consensus 220 -~~~~~~~~~---~~l~~---l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~-----~~~~~f~ 286 (508)
...+..... ..+.. +.....+.++||+ |++.++.+++.|++.+. ..+||+|++.+|. ++++.|+
T Consensus 246 ~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 246 VKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred EEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 000000000 00011 1122345566666 89999999999987643 8999999999999 7788897
Q ss_pred C----CC-----CCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 287 D----AS-----SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 287 ~----~~-----g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+ +. +..+|||||+++++||||+.++||+... +.++|+||+||+||.|..
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a-----------P~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA-----------PFESMQQRFGRVNRFGEL 380 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCcceEEECCC-----------CHHHHHHHhcccCCCCCC
Confidence 5 11 2268999999999999999899988644 468999999999999974
No 75
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.4e-28 Score=234.64 Aligned_cols=294 Identities=20% Similarity=0.195 Sum_probs=205.3
Q ss_pred HHHhhcccCCCccccCCCC-CCccc-cchHHHhcCCceEEEEccCCCchHHHH-HHHHHcCCCEEEEcchHHHHHHHHHH
Q 010534 44 IIRSYCSGSGMKKFDFTDL-TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKR 120 (508)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~-~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~-~~~l~~~~~~i~l~P~r~La~q~~~~ 120 (508)
.+.+++++. ||+..+ ++.|+ ++-.+- ..+++|.|+.|||+||++++ +..|+..+-+|++.|..+|..++.+-
T Consensus 6 ~VreaLKK~----FGh~kFKs~LQE~A~~c~V-K~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 6 KVREALKKL----FGHKKFKSRLQEQAINCIV-KRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHH----hCchhhcChHHHHHHHHHH-hccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHH
Confidence 345555555 566554 45666 665543 46899999999999999998 67777778889999999999999999
Q ss_pred HHhCCCceeeecccc------------ccccCCCcEEEEcceeccc------------cCCccEEEEccccccCCCCcCh
Q 010534 121 LNKANVSCDLITGQE------------REEVDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCKTRGF 176 (508)
Q Consensus 121 l~~~g~~~~~~~g~~------------~~~~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~~~~~rg~ 176 (508)
+..+.++|..+.+.. .....+..++++|||+... -..+.++|+||||+.+ +||+
T Consensus 81 L~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS--QWGH 158 (641)
T KOG0352|consen 81 LKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS--QWGH 158 (641)
T ss_pred HHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh--hhcc
Confidence 999988887665422 2223467789999988642 1679999999999998 8898
Q ss_pred HHHHHHh--ccc----CCce-EEEccCCcchHHHHHHhHcCCcEEEEeeeecC-----------------CCCC----CC
Q 010534 177 SFTRALL--GIC----ANEL-HLCGDPAAVPLIQQILQVTGDDVKVQSYERLS-----------------PLVP----LN 228 (508)
Q Consensus 177 ~~~~~ll--~l~----~~~~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-----------------~~~~----~~ 228 (508)
.+..-.| |-. ...+ .-+..++....-+++.....-.-+|..+..+. ++.. ..
T Consensus 159 DFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~ 238 (641)
T KOG0352|consen 159 DFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSS 238 (641)
T ss_pred ccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHH
Confidence 8642222 211 1111 11222222233333333222111121111110 0000 00
Q ss_pred Cccc---ccccc---CCC-CEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccc
Q 010534 229 VPLG---SFSNI---QTG-DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301 (508)
Q Consensus 229 ~~l~---~l~~~---~~~-~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~ 301 (508)
..+. ...+. ..| .+++|-||+.|+.++-.|...|. +...+|+++...+|.++.+.|.+ ++..||+||..+
T Consensus 239 ~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~--~~~PvI~AT~SF 315 (641)
T KOG0352|consen 239 SNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMN--NEIPVIAATVSF 315 (641)
T ss_pred HhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhc--CCCCEEEEEecc
Confidence 0110 01111 122 34444599999999999999888 89999999999999999999999 999999999999
Q ss_pred ccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 302 GMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 302 ~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+||+|-| |+.||+++. +.+.+.|.|..|||||.|.. .+|-.+|..+
T Consensus 316 GMGVDKp~VRFViHW~~---------~qn~AgYYQESGRAGRDGk~---SyCRLYYsR~ 362 (641)
T KOG0352|consen 316 GMGVDKPDVRFVIHWSP---------SQNLAGYYQESGRAGRDGKR---SYCRLYYSRQ 362 (641)
T ss_pred ccccCCcceeEEEecCc---------hhhhHHHHHhccccccCCCc---cceeeeeccc
Confidence 9999996 999999999 44999999999999999988 8887777654
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=1.8e-27 Score=257.06 Aligned_cols=295 Identities=20% Similarity=0.212 Sum_probs=218.9
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH-HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~-~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (508)
||...+++-|. ++-.. +.|+++++..|||+||++++ +.+++.++-+++|.|..+|+..+...+.+.+++...+.+.
T Consensus 260 Fg~~~FR~~Q~eaI~~~--l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~ 337 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINAT--LSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSI 337 (941)
T ss_pred hccccCChhHHHHHHHH--HcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeecccc
Confidence 69999999999 88866 67999999999999999998 6677778888999999999999999998889999888876
Q ss_pred cccc----------c--CCCcEEEEcceeccc----------cCC---ccEEEEccccccCCCCcChHHHHH------H-
Q 010534 135 EREE----------V--DGAKHRAVTVEMADV----------VSD---YDCAVIDEIQMLGCKTRGFSFTRA------L- 182 (508)
Q Consensus 135 ~~~~----------~--~~~~~iv~T~e~~~~----------l~~---~~~iViDEah~~~~~~rg~~~~~~------l- 182 (508)
.... . ....++++|||+... +.. +.++||||||+.+ +||+.+..- +
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS--qWgHdFRp~Yk~l~~l~ 415 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS--QWGHDFRPSYKRLGLLR 415 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh--hhcccccHHHHHHHHHH
Confidence 4431 1 134678999987632 233 8999999999998 788875422 1
Q ss_pred hcccCCceEEEccCCcchHHHHHHhHcCCcEE---EEeeeecCC------CCCCCCcc---cccccc-CC-CCEEEEeeH
Q 010534 183 LGICANELHLCGDPAAVPLIQQILQVTGDDVK---VQSYERLSP------LVPLNVPL---GSFSNI-QT-GDCIVTFSR 248 (508)
Q Consensus 183 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---v~~~~~~~~------~~~~~~~l---~~l~~~-~~-~~~iv~~s~ 248 (508)
...+...+.-+..+++...-++++...+-.-. -..+.|.+- -....... ...... .. ..||+|.++
T Consensus 416 ~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr 495 (941)
T KOG0351|consen 416 IRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSR 495 (941)
T ss_pred hhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCc
Confidence 11222222333444455666666665543221 111211110 00011111 111222 22 345556699
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCccccc
Q 010534 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRD 327 (508)
Q Consensus 249 ~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p 327 (508)
++|+.++..|+..+. +...||++|++.+|..+.+.|.. ++.+|+|||=++|||||.| |+.||++.+++
T Consensus 496 ~~ce~vs~~L~~~~~-~a~~YHAGl~~~~R~~Vq~~w~~--~~~~VivATVAFGMGIdK~DVR~ViH~~lPk-------- 564 (941)
T KOG0351|consen 496 KECEQVSAVLRSLGK-SAAFYHAGLPPKERETVQKAWMS--DKIRVIVATVAFGMGIDKPDVRFVIHYSLPK-------- 564 (941)
T ss_pred chHHHHHHHHHHhch-hhHhhhcCCCHHHHHHHHHHHhc--CCCeEEEEEeeccCCCCCCceeEEEECCCch--------
Confidence 999999999999986 89999999999999999999999 9999999999999999995 99999999955
Q ss_pred CChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhcCC
Q 010534 328 LTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEP 370 (508)
Q Consensus 328 ~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~~~ 370 (508)
|...|.|-+|||||.|.. ..|+.|+.- +...++.++...
T Consensus 565 -s~E~YYQE~GRAGRDG~~---s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 565 -SFEGYYQEAGRAGRDGLP---SSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred -hHHHHHHhccccCcCCCc---ceeEEecchhHHHHHHHHHHcc
Confidence 999999999999999987 888888754 445666666555
No 77
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=227.96 Aligned_cols=296 Identities=19% Similarity=0.185 Sum_probs=217.3
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCC----CEEEEcch
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSS----SGIYCGPL 110 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~----~~i~l~P~ 110 (508)
.|+..+..++.+. ||..++++|+ .+|.+ +.+++++-.+-||||||.+++.++ ..+. +++++.|+
T Consensus 27 gL~~~v~raI~kk-----g~~~ptpiqRKTipli--Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 27 GLDYKVLRAIHKK-----GFNTPTPIQRKTIPLI--LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCHHHHHHHHHh-----hcCCCCchhcccccce--eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 5888899999998 9999999999 99999 779999999999999999964333 3333 78999999
Q ss_pred HHHHHHHHHHHHhCC----Cceeeeccccccc------cCCCcEEEEccee--------ccccCCccEEEEccccccCCC
Q 010534 111 RLLAWEVAKRLNKAN----VSCDLITGQEREE------VDGAKHRAVTVEM--------ADVVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 111 r~La~q~~~~l~~~g----~~~~~~~g~~~~~------~~~~~~iv~T~e~--------~~~l~~~~~iViDEah~~~~~ 172 (508)
|+|+.|..+.++++| ..+.+++|+.... ..+..+|++||.. .-.++.+.+||+||++.+..+
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 999999999999764 4566666654332 2367788889843 334689999999999999976
Q ss_pred CcChHHHHHHhcccCCceEEEccCCcchHHHHHHhH-cCCcEEEE--eeeecCCCC----------CCCCcccc-cccc-
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQ--SYERLSPLV----------PLNVPLGS-FSNI- 237 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~--~~~~~~~~~----------~~~~~l~~-l~~~- 237 (508)
.|...+..++-.++.....+..+++-...+-.+... .-.+..|. ...+..+.. .+...+.. +.+.
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~ 259 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRI 259 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccc
Confidence 333446677777776665555554433333333322 11122221 001111100 00111111 1111
Q ss_pred CC-CCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEc
Q 010534 238 QT-GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (508)
Q Consensus 238 ~~-~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~ 315 (508)
.+ .+++++-++..++.+...++..+. .+..+||+|.+..|....+.|.. ++..++|.||++++|+||| .+.||++
T Consensus 260 ~~~~t~vf~~tk~hve~~~~ll~~~g~-~~s~iysslD~~aRk~~~~~F~~--~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337|consen 260 KDKQTIVFVATKHHVEYVRGLLRDFGG-EGSDIYSSLDQEARKINGRDFRG--RKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred cccceeEEecccchHHHHHHHHHhcCC-CccccccccChHhhhhccccccC--CccceEEEehhhhccCCCccccccccc
Confidence 12 344444489999999999999888 89999999999999999999999 8999999999999999998 9999999
Q ss_pred ccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 316 ~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
+. |.+...|.||.||+.|.|.. |..|.+..
T Consensus 337 d~---------p~~~klFvhRVgr~aragrt---g~aYs~V~ 366 (529)
T KOG0337|consen 337 DF---------PPDDKLFVHRVGRVARAGRT---GRAYSLVA 366 (529)
T ss_pred cC---------CCCCceEEEEecchhhcccc---ceEEEEEe
Confidence 99 66889999999999999987 77776643
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=3.9e-26 Score=228.88 Aligned_cols=256 Identities=16% Similarity=0.189 Sum_probs=158.4
Q ss_pred cc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhC--------CCceeeecccc
Q 010534 66 HT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQE 135 (508)
Q Consensus 66 q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~--------g~~~~~~~g~~ 135 (508)
|. +++.+...++.++++.+|||||||.+++.++.. ..+++|++|+++|+.|+++++.++ +..+..++|..
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~ 81 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKAT 81 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCc
Confidence 44 777776544557899999999999998666544 458899999999999999998753 44555666652
Q ss_pred ccc--------------------------cCCCcEEEEcceeccc----------------cCCccEEEEccccccCCCC
Q 010534 136 REE--------------------------VDGAKHRAVTVEMADV----------------VSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 136 ~~~--------------------------~~~~~~iv~T~e~~~~----------------l~~~~~iViDEah~~~~~~ 173 (508)
... ...+.+++++|+++.. +..+++||+||+|.+....
T Consensus 82 ~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~ 161 (357)
T TIGR03158 82 LKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQ 161 (357)
T ss_pred hHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCccc
Confidence 110 0123345555666642 3688999999999987431
Q ss_pred cChH----HHHHHhcccCCceEEEccCCcc-hH-HHHHHhH--cCCcEEEEe----------------------------
Q 010534 174 RGFS----FTRALLGICANELHLCGDPAAV-PL-IQQILQV--TGDDVKVQS---------------------------- 217 (508)
Q Consensus 174 rg~~----~~~~ll~l~~~~~~~~~~~~~~-~~-~~~l~~~--~~~~~~v~~---------------------------- 217 (508)
.... ....++.......++++.+++. +. ...+... .+..+.+..
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (357)
T TIGR03158 162 LVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPV 241 (357)
T ss_pred chhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccce
Confidence 1111 1111111111123444444433 23 3333222 222221100
Q ss_pred --eeecCCCCCCCCcc----ccc----cccCCCCEEEEe-eHHHHHHHHHHHHhcC-CCeEEEEcCCCCHHHHHHHHHHh
Q 010534 218 --YERLSPLVPLNVPL----GSF----SNIQTGDCIVTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRF 285 (508)
Q Consensus 218 --~~~~~~~~~~~~~l----~~l----~~~~~~~~iv~~-s~~~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~f 285 (508)
.... ........+ ..+ .+...+.++||+ |++.++.+++.|++.+ ...+..+||.+++.+|.+.
T Consensus 242 ~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~---- 316 (357)
T TIGR03158 242 ELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA---- 316 (357)
T ss_pred EEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh----
Confidence 0000 000111111 111 112345666666 8999999999998864 2378899999999987543
Q ss_pred cCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCC
Q 010534 286 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (508)
Q Consensus 286 ~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRag 341 (508)
++.+|||||+++++|||+|.+.||+. |.+..+|+||+||+|
T Consensus 317 ----~~~~iLVaTdv~~rGiDi~~~~vi~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ----MQFDILLGTSTVDVGVDFKRDWLIFS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred ----ccCCEEEEecHHhcccCCCCceEEEC-----------CCCHHHHhhhcccCC
Confidence 45689999999999999986677742 348999999999997
No 79
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.94 E-value=3.9e-26 Score=214.86 Aligned_cols=315 Identities=18% Similarity=0.194 Sum_probs=222.5
Q ss_pred ccCccccccCCCCCCCcccccccCccccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchH
Q 010534 13 ALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKT 91 (508)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT 91 (508)
+.|.+.-.+...+.|...+.. ++.+...-++.. |.+..+++.|. ++... +.+++++++.|||.||+
T Consensus 57 dag~~~eyd~spaawdkd~fp-------ws~e~~~ilk~~----f~lekfrplq~~ain~~--ma~ed~~lil~tgggks 123 (695)
T KOG0353|consen 57 DAGASNEYDRSPAAWDKDDFP-------WSDEAKDILKEQ----FHLEKFRPLQLAAINAT--MAGEDAFLILPTGGGKS 123 (695)
T ss_pred cccccccccCCccccccCCCC-------CchHHHHHHHHH----hhHHhcChhHHHHhhhh--hccCceEEEEeCCCccc
Confidence 444444444445566554433 566666666665 57889999999 88887 77999999999999999
Q ss_pred HHH-HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc------------ccCCCcEEEEcceeccc----
Q 010534 92 HQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE------------EVDGAKHRAVTVEMADV---- 154 (508)
Q Consensus 92 ~~~-~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~------------~~~~~~~iv~T~e~~~~---- 154 (508)
+++ +.++..+|-+++++|...|+.++.-.++.+|+....+...... ....-..+++|||.+..
T Consensus 124 lcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 124 LCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred hhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 998 7788899999999999999999999999999988776543221 11244678999976532
Q ss_pred ---------cCCccEEEEccccccCCCCcChHHHH--HHhcccCC---ceEEEccC--Ccc---hHHHHHHhHcCCcEEE
Q 010534 155 ---------VSDYDCAVIDEIQMLGCKTRGFSFTR--ALLGICAN---ELHLCGDP--AAV---PLIQQILQVTGDDVKV 215 (508)
Q Consensus 155 ---------l~~~~~iViDEah~~~~~~rg~~~~~--~ll~l~~~---~~~~~~~~--~~~---~~~~~l~~~~~~~~~v 215 (508)
...+.+|-|||+|+-+ +||+.+.. ..+++.++ ...++|.+ ++. .-.++++.....-..-
T Consensus 204 mnkleka~~~~~~~~iaidevhccs--qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~ 281 (695)
T KOG0353|consen 204 MNKLEKALEAGFFKLIAIDEVHCCS--QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR 281 (695)
T ss_pred HHHHHHHhhcceeEEEeecceeehh--hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee
Confidence 2678999999999998 77877531 12222221 11222222 222 2222222111100000
Q ss_pred Eeeee--------cCCC--CCCCCcc-cccccc--CCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHH
Q 010534 216 QSYER--------LSPL--VPLNVPL-GSFSNI--QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQA 282 (508)
Q Consensus 216 ~~~~~--------~~~~--~~~~~~l-~~l~~~--~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~ 282 (508)
..+.| ..|- +.....+ ..+... ....+|+|||+++++.++..|+..|. ....+|+.|.|++|.-.-
T Consensus 282 a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi-~a~~yha~lep~dks~~h 360 (695)
T KOG0353|consen 282 AGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI-HAGAYHANLEPEDKSGAH 360 (695)
T ss_pred cccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc-cccccccccCcccccccc
Confidence 01111 1111 1111111 112111 34468889999999999999999988 889999999999999999
Q ss_pred HHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHh--------------------------
Q 010534 283 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ-------------------------- 335 (508)
Q Consensus 283 ~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Q-------------------------- 335 (508)
+.|.. |++.|+|||-+++||||-| |+.||+..+++ |..+|.|
T Consensus 361 q~w~a--~eiqvivatvafgmgidkpdvrfvihhsl~k---------sienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 361 QGWIA--GEIQVIVATVAFGMGIDKPDVRFVIHHSLPK---------SIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccccc--cceEEEEEEeeecccCCCCCeeEEEecccch---------hHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 99999 9999999999999999997 99999999965 9999999
Q ss_pred -----------------hhccCCCCCCCCCcEEEEEecC
Q 010534 336 -----------------IAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 336 -----------------r~GRagR~g~~~~~G~~~~~~~ 357 (508)
..|||||.+.. ..|+.+|.
T Consensus 430 levctnfkiffavfsekesgragrd~~~---a~cilyy~ 465 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMK---ADCILYYG 465 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCc---ccEEEEec
Confidence 78999999987 77877764
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.3e-25 Score=233.13 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=179.0
Q ss_pred CCCCCccc-cchHHHhcC-CceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhC----CCceeeec
Q 010534 60 TDLTRPHT-WYPLARKKV-RKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLIT 132 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~-~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~----g~~~~~~~ 132 (508)
..++++|+ ++....... .+..+++.|||+|||++++..+.. .+++||++|+..|+.|+.+.+.++ ...++.++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~t 333 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFT 333 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 56889999 877665322 257899999999999998766543 467899999999999999999875 24466677
Q ss_pred ccccccc-CCCcEEEEcceecc--------------cc--CCccEEEEccccccCCCCcChHHHHHH--------hcccC
Q 010534 133 GQEREEV-DGAKHRAVTVEMAD--------------VV--SDYDCAVIDEIQMLGCKTRGFSFTRAL--------LGICA 187 (508)
Q Consensus 133 g~~~~~~-~~~~~iv~T~e~~~--------------~l--~~~~~iViDEah~~~~~~rg~~~~~~l--------l~l~~ 187 (508)
|+.+... ...+++|+|+.++. .+ ..+++||+||||++.. ..+..++ +|+++
T Consensus 334 g~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~~RLGLTA 409 (732)
T TIGR00603 334 SDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAHCKLGLTA 409 (732)
T ss_pred cCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcCcEEEEee
Confidence 7654432 24678899987653 12 4689999999999853 3344433 33333
Q ss_pred CceEEEccCCcchHHHHHHhHcCCcE---------------EEEeeeecCCCCC------------C--------CCcc-
Q 010534 188 NELHLCGDPAAVPLIQQILQVTGDDV---------------KVQSYERLSPLVP------------L--------NVPL- 231 (508)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~v~~~~~~~~~~~------------~--------~~~l- 231 (508)
+.++--+ ....+....|..+ .+..+....++.. . ...+
T Consensus 410 TP~ReD~------~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~ 483 (732)
T TIGR00603 410 TLVREDD------KITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFR 483 (732)
T ss_pred cCcccCC------chhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHH
Confidence 3222110 1111111122111 1111110111110 0 0000
Q ss_pred --ccccc-c-CCC-CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccc
Q 010534 232 --GSFSN-I-QTG-DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (508)
Q Consensus 232 --~~l~~-~-~~~-~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gi 305 (508)
..+.+ . ..+ .+|||+ +...+..+++.| ++..+||++++.+|.++++.|+++ +..++||+|+++++|+
T Consensus 484 ~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------~~~~I~G~ts~~ER~~il~~Fr~~-~~i~vLv~SkVgdeGI 556 (732)
T TIGR00603 484 ACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------GKPFIYGPTSQQERMQILQNFQHN-PKVNTIFLSKVGDTSI 556 (732)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc------CCceEECCCCHHHHHHHHHHHHhC-CCccEEEEeccccccc
Confidence 01111 1 133 455555 577788887777 245689999999999999999861 3779999999999999
Q ss_pred ccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCC----cEEEEEecCCC
Q 010534 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP----VGEVTCLDSED 359 (508)
Q Consensus 306 dip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~----~G~~~~~~~~~ 359 (508)
|+| +++||+++.+ .-|..+|+||+||++|.++++. ...+|.+.+.+
T Consensus 557 DlP~a~vvI~~s~~--------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 557 DLPEANVLIQISSH--------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred CCCCCCEEEEeCCC--------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 998 9999998762 1389999999999999987522 24557776655
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=244.20 Aligned_cols=292 Identities=22% Similarity=0.279 Sum_probs=203.4
Q ss_pred HHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----C--CCEEEEcchHHHHH
Q 010534 43 VIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S--SSGIYCGPLRLLAW 115 (508)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----~--~~~i~l~P~r~La~ 115 (508)
..+...+... ++..+...|. ++..++ ++++++|+.|||||||.+++.++++ + .+++|+.||++||+
T Consensus 57 ~~l~~~l~~~-----g~~~lY~HQ~~A~~~~~--~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 57 ESLKSALVKA-----GIERLYSHQVDALRLIR--EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALAN 129 (851)
T ss_pred hHHHHHHHHh-----ccccccHHHHHHHHHHH--CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHh
Confidence 3456667776 7888999999 999885 4899999999999999998776653 3 35699999999999
Q ss_pred HHHHHHHhC----C--Cceeeeccccccc------cCCCcEEEEcceeccc------------cCCccEEEEccccccCC
Q 010534 116 EVAKRLNKA----N--VSCDLITGQEREE------VDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 116 q~~~~l~~~----g--~~~~~~~g~~~~~------~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~~~ 171 (508)
++.++++++ + +.++.++|+.... ...+.+++++|.|+.. ++++++||+||+|.+..
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 999999854 4 7778889976433 2356677777888864 27799999999999852
Q ss_pred CCcChHHH---HHHhc---ccCCceEEEccCCcchHHHHHHhH-cCCcEEEEee-----------eecCCCC-C--C---
Q 010534 172 KTRGFSFT---RALLG---ICANELHLCGDPAAVPLIQQILQV-TGDDVKVQSY-----------ERLSPLV-P--L--- 227 (508)
Q Consensus 172 ~~rg~~~~---~~ll~---l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~~-----------~~~~~~~-~--~--- 227 (508)
-+|.... +.|+. ......+++..++++......... .+..+.+... ....|.. . .
T Consensus 210 -v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r 288 (851)
T COG1205 210 -VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIR 288 (851)
T ss_pred -cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcc
Confidence 2343322 22222 222355666666676666555543 3333333111 1111100 0 0
Q ss_pred CCcc---ccccc--cCCC-CEEEEe-eHHHHHHHH----HHHHhcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCee
Q 010534 228 NVPL---GSFSN--IQTG-DCIVTF-SRHAIYRLK----KAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (508)
Q Consensus 228 ~~~l---~~l~~--~~~~-~~iv~~-s~~~~~~l~----~~L~~~~---~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ 293 (508)
.... ..+.. ...+ ..++|+ |++.++.+. +.+...+ ...+..++|++.+++|.+++..|+. |+..
T Consensus 289 ~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~--g~~~ 366 (851)
T COG1205 289 RSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE--GELL 366 (851)
T ss_pred cchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc--CCcc
Confidence 0000 11110 1233 344455 899888886 3333333 1268999999999999999999999 9999
Q ss_pred EEEecccccccccc-cccEEEEcccccccCcccccC-ChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 294 VLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDL-TVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 294 ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~-s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
++++|++++-|+|| .++.||..+. |. +..+++||+|||||.+.. +.++...
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~---------P~~s~~~~~Q~~GRaGR~~~~---~l~~~v~ 419 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGY---------PGVSVLSFRQRAGRAGRRGQE---SLVLVVL 419 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCC---------CCchHHHHHHhhhhccCCCCC---ceEEEEe
Confidence 99999999999999 5999999988 66 899999999999999954 4444333
No 82
>PRK14701 reverse gyrase; Provisional
Probab=99.93 E-value=2.5e-25 Score=254.26 Aligned_cols=277 Identities=15% Similarity=0.121 Sum_probs=176.6
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH-HHH---HcCCCEEEEcchHHHHHHHHHHHHhC------C
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRL---ESSSSGIYCGPLRLLAWEVAKRLNKA------N 125 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~-~~l---~~~~~~i~l~P~r~La~q~~~~l~~~------g 125 (508)
+|+ .|+++|+ ++|.+ +++++++++||||||||+.++ ..+ .++.+++|++||++|+.|+++.+..+ +
T Consensus 76 ~G~-~pt~iQ~~~i~~i--l~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRI--LRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred hCC-CCCHHHHHHHHHH--HcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 588 6999999 99998 569999999999999999632 122 24558999999999999999999863 3
Q ss_pred Cceeeeccccccc----------cCCCcEEEEcceeccc------cCCccEEEEccccccCCCC---------cChHHHH
Q 010534 126 VSCDLITGQEREE----------VDGAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKT---------RGFSFTR 180 (508)
Q Consensus 126 ~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~------l~~~~~iViDEah~~~~~~---------rg~~~~~ 180 (508)
+.+..++|+.... ..+..++++||+.+.. ..+++++||||||++.... .||.-..
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~ 232 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEI 232 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHH
Confidence 4556667754321 1246899999975532 1568999999999997421 1433111
Q ss_pred H-----Hh-----------------------cccCCc-eEEEccCCcch--HHHHHHhHcCCcEEE-----------Eee
Q 010534 181 A-----LL-----------------------GICANE-LHLCGDPAAVP--LIQQILQVTGDDVKV-----------QSY 218 (508)
Q Consensus 181 ~-----ll-----------------------~l~~~~-~~~~~~~~~~~--~~~~l~~~~~~~~~v-----------~~~ 218 (508)
. ++ .++... +.++.+++..+ ....++...- .+.+ +.|
T Consensus 233 ~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l-~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 233 IEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL-GFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred HHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-EEEecCCCCCCCCcEEEE
Confidence 0 11 111222 23344443332 2222322110 1111 111
Q ss_pred eecCCCCCCCCccccccccCCCCEEEEeeHHH---HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEE
Q 010534 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (508)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~s~~~---~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~il 295 (508)
... .-......+..+.....+.+|+|.|++. ++++++.|.+.+. ++..+||+ |...++.|++ |+.+||
T Consensus 312 i~~-~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi-~a~~~h~~-----R~~~l~~F~~--G~~~VL 382 (1638)
T PRK14701 312 LNP-EKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGF-KIELVSAK-----NKKGFDLFEE--GEIDYL 382 (1638)
T ss_pred EEC-CHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCC-eEEEecch-----HHHHHHHHHc--CCCCEE
Confidence 000 0000011112223334444555557554 6899999999876 99999995 8899999999 999999
Q ss_pred Eec----cccccccccc--ccEEEEcccccccCc-------ccccCChhhHHhhhccCCCCCCC
Q 010534 296 VAS----DAIGMGLNLN--ISRIIFSTMKKFDGV-------ELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 296 VaT----~~~~~Gidip--v~~VI~~~~~~~d~~-------~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
||| ++++||||+| |++|||+|+|+|.-. ...-.......++.|||||.|..
T Consensus 383 VaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 383 IGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999 5899999996 899999999984421 00000123355667999999975
No 83
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=2.8e-25 Score=248.85 Aligned_cols=268 Identities=18% Similarity=0.186 Sum_probs=173.1
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH---H-HcCCCEEEEcchHHHHHHHHHHHHhC----CCc
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVS 127 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~---l-~~~~~~i~l~P~r~La~q~~~~l~~~----g~~ 127 (508)
+|+ .|+++|. |+|.+ +++++++++||||||||+.++.. + .++++++|++|||+|+.|+++++.++ ++.
T Consensus 77 ~G~-~pt~iQ~~~i~~i--l~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRL--LLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred cCC-CCcHHHHHHHHHH--HCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 466 8999999 99998 67999999999999999764322 2 23568999999999999999999865 445
Q ss_pred eeeeccccc------c------ccCCCcEEEEcceecc----c--cCCccEEEEccccccCCCCc---------ChH---
Q 010534 128 CDLITGQER------E------EVDGAKHRAVTVEMAD----V--VSDYDCAVIDEIQMLGCKTR---------GFS--- 177 (508)
Q Consensus 128 ~~~~~g~~~------~------~~~~~~~iv~T~e~~~----~--l~~~~~iViDEah~~~~~~r---------g~~--- 177 (508)
+..+.|+.. . ...+..++|+||+.+. . ..+++++||||||.+.+..+ |+.
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH
Confidence 555555421 1 1134688999995543 2 25599999999999986332 442
Q ss_pred HHHHHhcccC------------------------CceEEEccCCcch-HHH-HHHhHcCCcEEE----------Eeeeec
Q 010534 178 FTRALLGICA------------------------NELHLCGDPAAVP-LIQ-QILQVTGDDVKV----------QSYERL 221 (508)
Q Consensus 178 ~~~~ll~l~~------------------------~~~~~~~~~~~~~-~~~-~l~~~~~~~~~v----------~~~~~~ 221 (508)
...++-.++. ....++.+++..+ ... .++...- .+.+ .+..-.
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-~~~v~~~~~~~rnI~~~yi~ 312 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-GFEVGSPVFYLRNIVDSYIV 312 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-eEEecCcccccCCceEEEEE
Confidence 1122211111 2334455544433 122 1221110 0111 111000
Q ss_pred CCCCCCCCcc-ccccccCCCCEEEEeeHHH---HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEe
Q 010534 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (508)
Q Consensus 222 ~~~~~~~~~l-~~l~~~~~~~~iv~~s~~~---~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa 297 (508)
.+ .....+ ..+.....+.+|||.+++. ++.+++.|+..+. ++..+||++ + +.++.|++ |+.+||||
T Consensus 313 ~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi-~v~~~hg~l----~-~~l~~F~~--G~~~VLVa 382 (1176)
T PRK09401 313 DE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGI-NAELAISGF----E-RKFEKFEE--GEVDVLVG 382 (1176)
T ss_pred cc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCC-cEEEEeCcH----H-HHHHHHHC--CCCCEEEE
Confidence 00 111112 2223334444444446555 9999999999877 899999999 1 34599999 99999999
Q ss_pred ----ccccccccccc--ccEEEEcccccccCcccccCChhhHHhhhccCC
Q 010534 298 ----SDAIGMGLNLN--ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (508)
Q Consensus 298 ----T~~~~~Gidip--v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRag 341 (508)
||+++||||+| |++|||++.|+|-- .--....+.||.||+-
T Consensus 383 tas~tdv~aRGIDiP~~IryVI~y~vP~~~~---~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 383 VASYYGVLVRGIDLPERIRYAIFYGVPKFKF---SLEEELAPPFLLLRLL 429 (1176)
T ss_pred ecCCCCceeecCCCCcceeEEEEeCCCCEEE---eccccccCHHHHHHHH
Confidence 69999999996 79999999976321 1113566888888885
No 84
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=1.4e-24 Score=240.42 Aligned_cols=105 Identities=23% Similarity=0.324 Sum_probs=90.4
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCC--------CCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~--------l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip 308 (508)
..+.++||+ +++.++.+++.|...+. .+..+||. +++.+|..+++.|++ |+.+|||||+++++|+|+|
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~-~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~eGldi~ 440 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGI-KAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVLVSTSVAEEGLDIP 440 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCC-ceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcCCCcc
Confidence 345566666 79999999999987766 77788876 999999999999999 8999999999999999997
Q ss_pred -ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 309 -v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+++||+++. +.+...++||+||+||.|+ |.++.+..+
T Consensus 441 ~~~~VI~yd~---------~~s~~r~iQR~GR~gR~~~----~~v~~l~~~ 478 (773)
T PRK13766 441 SVDLVIFYEP---------VPSEIRSIQRKGRTGRQEE----GRVVVLIAK 478 (773)
T ss_pred cCCEEEEeCC---------CCCHHHHHHHhcccCcCCC----CEEEEEEeC
Confidence 999999988 6699999999999999987 666666543
No 85
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=224.62 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=82.4
Q ss_pred EEEEe-eHHHHHHHHHHHHhcCCC--eEEEEc--------CCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-c
Q 010534 242 CIVTF-SRHAIYRLKKAIESRGKH--LCSIVY--------GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (508)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~--~v~~lh--------g~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v 309 (508)
.|+|. +|..|..+.+.|.+.... +...+- .+|++.++.++++.|++ |+.+|||||+++|+|+||+ +
T Consensus 416 ~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~NvLVATSV~EEGLDI~ec 493 (746)
T KOG0354|consen 416 TIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINVLVATSVAEEGLDIGEC 493 (746)
T ss_pred EEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccEEEEecchhccCCcccc
Confidence 34444 899999999999843111 222222 37999999999999999 9999999999999999997 9
Q ss_pred cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 310 ~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+.||-||... ++...+||.|| ||... |.|+.+...
T Consensus 494 ~lVIcYd~~s---------npIrmIQrrGR-gRa~n----s~~vll~t~ 528 (746)
T KOG0354|consen 494 NLVICYDYSS---------NPIRMVQRRGR-GRARN----SKCVLLTTG 528 (746)
T ss_pred cEEEEecCCc---------cHHHHHHHhcc-ccccC----CeEEEEEcc
Confidence 9999999844 89999999999 99987 788777663
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=5.3e-24 Score=217.58 Aligned_cols=279 Identities=20% Similarity=0.249 Sum_probs=187.8
Q ss_pred CCCCccc-cchHHHhc----CCceEEEEccCCCchHHHHHH----HHHcCCCEEEEcchHHHHHHHHHHHHh----CCCc
Q 010534 61 DLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~----~~~~~iv~~pTGsGKT~~~~~----~l~~~~~~i~l~P~r~La~q~~~~l~~----~g~~ 127 (508)
.+|.-|+ ++..+..- ..-+-++.|..|||||.+|+. .+..+.++...+||-.||.|.++.+.+ +|+.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~ 341 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIR 341 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCe
Confidence 4677777 66555322 234458999999999999743 444567899999999999999988874 5999
Q ss_pred eeeeccccccc----------cCCCcEEEEcceecc---ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEE-
Q 010534 128 CDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC- 193 (508)
Q Consensus 128 ~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~- 193 (508)
+.+++|..+.. .....++|.|--.+. ..+++.++|+||-|+.+.. ....|...-....+++
T Consensus 342 V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~-----QR~~L~~KG~~~Ph~Lv 416 (677)
T COG1200 342 VALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVH-----QRLALREKGEQNPHVLV 416 (677)
T ss_pred EEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHH-----HHHHHHHhCCCCCcEEE
Confidence 99999965432 224677888865543 3589999999999999654 2233322222133333
Q ss_pred ccCCcchHHHHHH-hHcCCcEEEEeeeecC-----------CCCCCCCccccc-cccCCCCEEE-Ee-----e----HHH
Q 010534 194 GDPAAVPLIQQIL-QVTGDDVKVQSYERLS-----------PLVPLNVPLGSF-SNIQTGDCIV-TF-----S----RHA 250 (508)
Q Consensus 194 ~~~~~~~~~~~l~-~~~~~~~~v~~~~~~~-----------~~~~~~~~l~~l-~~~~~~~~iv-~~-----s----~~~ 250 (508)
.+++++ .+.++ ...|+ ..+....... +.......+..+ .++.+|..++ ++ | -+.
T Consensus 417 MTATPI--PRTLAlt~fgD-ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 417 MTATPI--PRTLALTAFGD-LDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred EeCCCc--hHHHHHHHhcc-ccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 333333 33333 22222 2222211110 111111111111 1223444333 33 2 146
Q ss_pred HHHHHHHHHhcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccC
Q 010534 251 IYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDL 328 (508)
Q Consensus 251 ~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~ 328 (508)
+.++++.|+... ..++..+||.|+++++.+++++|++ |+.+|||||.++|.|||+| ....|+.+..+ .
T Consensus 494 a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~--~e~~ILVaTTVIEVGVdVPnATvMVIe~AER--------F 563 (677)
T COG1200 494 AEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE--GEIDILVATTVIEVGVDVPNATVMVIENAER--------F 563 (677)
T ss_pred HHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc--CCCcEEEEeeEEEecccCCCCeEEEEechhh--------h
Confidence 778888887643 4469999999999999999999999 9999999999999999998 88777766643 3
Q ss_pred ChhhHHhhhccCCCCCCCCCcEEEEEecCCCH
Q 010534 329 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (508)
Q Consensus 329 s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~ 360 (508)
-.+++.|-.||+||.+.. ++|+.++....
T Consensus 564 GLaQLHQLRGRVGRG~~q---SyC~Ll~~~~~ 592 (677)
T COG1200 564 GLAQLHQLRGRVGRGDLQ---SYCVLLYKPPL 592 (677)
T ss_pred hHHHHHHhccccCCCCcc---eEEEEEeCCCC
Confidence 599999999999999988 99999987664
No 87
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=5.3e-24 Score=222.19 Aligned_cols=310 Identities=22% Similarity=0.235 Sum_probs=218.0
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH----H-HHHcCCCEEEEcchHHHHHHHHHHHHh----CCCc
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----S-RLESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~----~-~l~~~~~~i~l~P~r~La~q~~~~l~~----~g~~ 127 (508)
|+..+...|. .+..-+-+++++.|..+||+.|||+++- + .+...+.++.+.|..+.+.+-...+.. +|++
T Consensus 220 gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 8889999998 5533333689999999999999999972 2 223356778888888888877777664 4777
Q ss_pred eeeeccccccc--cCCCcEEEEcceeccc----------cCCccEEEEccccccCCCCcChHHHHHH----hcccCCceE
Q 010534 128 CDLITGQEREE--VDGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGCKTRGFSFTRAL----LGICANELH 191 (508)
Q Consensus 128 ~~~~~g~~~~~--~~~~~~iv~T~e~~~~----------l~~~~~iViDEah~~~~~~rg~~~~~~l----l~l~~~~~~ 191 (508)
+....|..... .....+.+||.|+... +..+++||+||-|++.+..||......+ .......++
T Consensus 300 ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~ 379 (1008)
T KOG0950|consen 300 VEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQ 379 (1008)
T ss_pred chhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcccccee
Confidence 76666654332 2355678999998754 3779999999999999999999865443 444455688
Q ss_pred EEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCCC---------C---Ccccccc---------------------ccC
Q 010534 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL---------N---VPLGSFS---------------------NIQ 238 (508)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~---------~---~~l~~l~---------------------~~~ 238 (508)
++|++++.++...+..+....+....+ |+.++... . ..+..+. ...
T Consensus 380 iIGMSATi~N~~lL~~~L~A~~y~t~f-RPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~ 458 (1008)
T KOG0950|consen 380 IIGMSATIPNNSLLQDWLDAFVYTTRF-RPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAP 458 (1008)
T ss_pred EeeeecccCChHHHHHHhhhhheeccc-CcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhh
Confidence 999999999888888877654333222 22222110 0 0000010 112
Q ss_pred CCC-EEEEe-eHHHHHHHHHHHHhc-------------------------------------CCCeEEEEcCCCCHHHHH
Q 010534 239 TGD-CIVTF-SRHAIYRLKKAIESR-------------------------------------GKHLCSIVYGSLPPETRT 279 (508)
Q Consensus 239 ~~~-~iv~~-s~~~~~~l~~~L~~~-------------------------------------~~~~v~~lhg~l~~~~R~ 279 (508)
.+. +++|+ +++.|+.++..+... -..+++++|++++.++|.
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~ 538 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEERE 538 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHH
Confidence 333 66666 888888777555332 112589999999999999
Q ss_pred HHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEE-ecCC
Q 010534 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LDSE 358 (508)
Q Consensus 280 ~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~-~~~~ 358 (508)
.+...|+. |...|++||+.++.|+|+|++.||.-... + +....+..+|+||+|||||.|.+ ..|.++. +...
T Consensus 539 ~iE~afr~--g~i~vl~aTSTlaaGVNLPArRVIiraP~-~---g~~~l~~~~YkQM~GRAGR~gid-T~GdsiLI~k~~ 611 (1008)
T KOG0950|consen 539 IIEAAFRE--GNIFVLVATSTLAAGVNLPARRVIIRAPY-V---GREFLTRLEYKQMVGRAGRTGID-TLGDSILIIKSS 611 (1008)
T ss_pred HHHHHHHh--cCeEEEEecchhhccCcCCcceeEEeCCc-c---ccchhhhhhHHhhhhhhhhcccc-cCcceEEEeecc
Confidence 99999999 99999999999999999999999865432 1 12356899999999999999986 5565443 3444
Q ss_pred CHHHHHhhhcCCCchhh
Q 010534 359 DLPLLHKSLLEPSPMLE 375 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~i~ 375 (508)
+...+.+++..+.+...
T Consensus 612 e~~~~~~lv~~~~~~~~ 628 (1008)
T KOG0950|consen 612 EKKRVRELVNSPLKPLN 628 (1008)
T ss_pred chhHHHHHHhccccccc
Confidence 44566677776655433
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.91 E-value=2.3e-23 Score=224.32 Aligned_cols=288 Identities=16% Similarity=0.161 Sum_probs=179.5
Q ss_pred CCCCCccc-cchHHHhc-CCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHh-CCCceeeec
Q 010534 60 TDLTRPHT-WYPLARKK-VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDLIT 132 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~-~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~-~g~~~~~~~ 132 (508)
..+++.|+ ++..+... .++++++.|+||||||.+++..+ ..++++++++|+++|+.|+++++++ +|..+..++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~ 222 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLH 222 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35888998 88887543 35789999999999999986544 3466899999999999999999985 688898888
Q ss_pred cccccc----------cCCCcEEEEcc-eeccccCCccEEEEccccccCCCCc-ChHH--HH--HHhcccCCceEEEccC
Q 010534 133 GQEREE----------VDGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKTR-GFSF--TR--ALLGICANELHLCGDP 196 (508)
Q Consensus 133 g~~~~~----------~~~~~~iv~T~-e~~~~l~~~~~iViDEah~~~~~~r-g~~~--~~--~ll~l~~~~~~~~~~~ 196 (508)
|+.... .....++++|+ ..+..+.++++|||||+|..+..+. +..+ .+ .+.........+++++
T Consensus 223 s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SA 302 (679)
T PRK05580 223 SGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSA 302 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcC
Confidence 864321 12457888887 3445578999999999998764321 2211 11 1112222233344443
Q ss_pred CcchHHHHHHhH-cCC----------------cEEEEeeeecCCC---C-CCCCccccccc-cCCC-CEEEE--------
Q 010534 197 AAVPLIQQILQV-TGD----------------DVKVQSYERLSPL---V-PLNVPLGSFSN-IQTG-DCIVT-------- 245 (508)
Q Consensus 197 ~~~~~~~~l~~~-~~~----------------~~~v~~~~~~~~~---~-~~~~~l~~l~~-~~~~-~~iv~-------- 245 (508)
++. .+.+... .|. .+.+......... . .....+..+.+ +..| ..++|
T Consensus 303 Tps--~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~ 380 (679)
T PRK05580 303 TPS--LESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAP 380 (679)
T ss_pred CCC--HHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCC
Confidence 332 1112111 111 0111110000000 0 00000000100 1111 11111
Q ss_pred -----------------------------------------------------eeHHHHHHHHHHHHhc-CCCeEEEEcC
Q 010534 246 -----------------------------------------------------FSRHAIYRLKKAIESR-GKHLCSIVYG 271 (508)
Q Consensus 246 -----------------------------------------------------~s~~~~~~l~~~L~~~-~~~~v~~lhg 271 (508)
.....++.+++.|++. +..++..+|+
T Consensus 381 ~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~ 460 (679)
T PRK05580 381 FLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDR 460 (679)
T ss_pred ceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEec
Confidence 1234567788888775 3457999999
Q ss_pred CCC--HHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE--cccccccCc-ccccCChhhHHhhhccCCCCCC
Q 010534 272 SLP--PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF--STMKKFDGV-ELRDLTVPEVKQIAGRAGRYGS 345 (508)
Q Consensus 272 ~l~--~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~--~~~~~~d~~-~~~p~s~~~~~Qr~GRagR~g~ 345 (508)
++. .+++.++++.|++ |+.+|||+|+++++|+|+| ++.|+. .|...+-++ +......+.+.|++|||||.+.
T Consensus 461 d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~ 538 (679)
T PRK05580 461 DTTRRKGALEQLLAQFAR--GEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK 538 (679)
T ss_pred cccccchhHHHHHHHHhc--CCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC
Confidence 986 4678899999999 9999999999999999997 998854 444332222 2222356889999999999887
Q ss_pred CCCcEEEEE
Q 010534 346 KFPVGEVTC 354 (508)
Q Consensus 346 ~~~~G~~~~ 354 (508)
+ |.|+.
T Consensus 539 ~---g~vii 544 (679)
T PRK05580 539 P---GEVLI 544 (679)
T ss_pred C---CEEEE
Confidence 6 77764
No 89
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.5e-23 Score=220.74 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc---c-cc---
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL---N-IS--- 310 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi---p-v~--- 310 (508)
...++||+ |.+.++.+++.|.+.+. .+..+||++...++..+...+.. | +|+||||+++||+|| | |.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi-~~~~L~~~~~~~e~~~i~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGI-PHNLLNAKNAAKEAQIIAEAGQK--G--AVTVATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCccHHHHHHHHHcCCC--C--eEEEEccchhcCcCCCccccccccc
Confidence 34566666 89999999999999876 89999999999888888888776 5 699999999999999 4 87
Q ss_pred --EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 311 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 311 --~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+||+++. |.+...|.||+|||||.|.. |.++.+.+.+
T Consensus 503 GL~VI~~d~---------p~s~r~y~qr~GRtGR~G~~---G~s~~~is~e 541 (790)
T PRK09200 503 GLAVIGTER---------MESRRVDLQLRGRSGRQGDP---GSSQFFISLE 541 (790)
T ss_pred CcEEEeccC---------CCCHHHHHHhhccccCCCCC---eeEEEEEcch
Confidence 9999998 66999999999999999988 8876665544
No 90
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.5e-23 Score=216.26 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=85.9
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-cc-------
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS------- 310 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~------- 310 (508)
..++||+ |++.++.+++.|.+.+. .+..+||+++..++..+. |.. +...|+||||+++||+||+ ..
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~~gi-~~~~Lhg~~~~rE~~ii~--~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GG 548 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLREAGL-PHQVLNAKQDAEEAAIVA--RAG--QRGRITVATNMAGRGTDIKLEPGVAARGG 548 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCC-CEEEeeCCcHHHHHHHHH--HcC--CCCcEEEEccchhcccCcCCccchhhcCC
Confidence 4456666 89999999999999876 899999997655554444 444 3346999999999999996 33
Q ss_pred -EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHh
Q 010534 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (508)
Q Consensus 311 -~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~ 365 (508)
+||+++. |.+...|.||+||+||.|.. |.++.+.+.+...+..
T Consensus 549 LhVI~~d~---------P~s~r~y~hr~GRTGRqG~~---G~s~~~is~eD~l~~~ 592 (656)
T PRK12898 549 LHVILTER---------HDSARIDRQLAGRCGRQGDP---GSYEAILSLEDDLLQS 592 (656)
T ss_pred CEEEEcCC---------CCCHHHHHHhcccccCCCCC---eEEEEEechhHHHHHh
Confidence 8999998 66999999999999999987 8887776644334433
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=3.2e-23 Score=215.54 Aligned_cols=266 Identities=14% Similarity=0.138 Sum_probs=163.9
Q ss_pred EEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHh-CCCceeeeccccccc----------cCCCcEE
Q 010534 81 LHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREE----------VDGAKHR 145 (508)
Q Consensus 81 iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~----------~~~~~~i 145 (508)
++.||||||||.+++..+ .++++++|++|+++|+.|+++++++ +|..+.+++|..... ..+..++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 478999999999986544 3466899999999999999999985 688888888754321 1245677
Q ss_pred EEcc-eeccccCCccEEEEccccccCCCCc-ChHH--H--HHHhcccCCceEEEccCCcchHHHHHHhHcCCcEEEEee-
Q 010534 146 AVTV-EMADVVSDYDCAVIDEIQMLGCKTR-GFSF--T--RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY- 218 (508)
Q Consensus 146 v~T~-e~~~~l~~~~~iViDEah~~~~~~r-g~~~--~--~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~- 218 (508)
++|. ..+..+.++++|||||+|..+..+. ++.+ . ..+.........+.+++++. .+.+.......+.....
T Consensus 81 VGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs--les~~~~~~g~~~~~~l~ 158 (505)
T TIGR00595 81 IGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS--LESYHNAKQKAYRLLVLT 158 (505)
T ss_pred ECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC--HHHHHHHhcCCeEEeech
Confidence 7776 3345578999999999999874322 2221 1 11222222233344443322 22232221111211110
Q ss_pred eec----------CCCCCC-------CCccccccc-cCCC-CEEEEeeH-------------------------------
Q 010534 219 ERL----------SPLVPL-------NVPLGSFSN-IQTG-DCIVTFSR------------------------------- 248 (508)
Q Consensus 219 ~~~----------~~~~~~-------~~~l~~l~~-~~~~-~~iv~~s~------------------------------- 248 (508)
.+. ..+... ...+..+.+ +..| ..++|..+
T Consensus 159 ~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~ 238 (505)
T TIGR00595 159 RRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKE 238 (505)
T ss_pred hhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCC
Confidence 000 000000 000111111 1222 33333211
Q ss_pred ------------------------------HHHHHHHHHHHhc-CCCeEEEEcCCCCHHHH--HHHHHHhcCCCCCeeEE
Q 010534 249 ------------------------------HAIYRLKKAIESR-GKHLCSIVYGSLPPETR--TRQATRFNDASSEFDVL 295 (508)
Q Consensus 249 ------------------------------~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R--~~~~~~f~~~~g~~~il 295 (508)
-.++.+.+.|++. +..++..+|++++...+ .++++.|++ |+.+||
T Consensus 239 ~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~IL 316 (505)
T TIGR00595 239 GKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADIL 316 (505)
T ss_pred CeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEE
Confidence 1256777777765 34589999999987665 889999999 999999
Q ss_pred Eeccccccccccc-ccEEE--EcccccccCc-ccccCChhhHHhhhccCCCCCCCCCcEEEE
Q 010534 296 VASDAIGMGLNLN-ISRII--FSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353 (508)
Q Consensus 296 VaT~~~~~Gidip-v~~VI--~~~~~~~d~~-~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~ 353 (508)
|+|+++++|+|+| ++.|+ +.|..-+.++ +......+.+.|++|||||.+.. |.++
T Consensus 317 VgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~---g~vi 375 (505)
T TIGR00595 317 IGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP---GQVI 375 (505)
T ss_pred EeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC---CEEE
Confidence 9999999999997 88875 5554332222 12223578899999999998876 7765
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=4.2e-23 Score=222.10 Aligned_cols=316 Identities=15% Similarity=0.169 Sum_probs=211.4
Q ss_pred CCCCCCCcccccccCccccCcHHHHhhcccCCC-----------------ccccCCCCCCccc-cchHHHhc----CCce
Q 010534 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGM-----------------KKFDFTDLTRPHT-WYPLARKK----VRKV 79 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~q~-~~~~~~~~----~~~~ 79 (508)
-.+..|.....+....+..+..++.+...++.. ..|+|. -|+-|. ++..++.- +--+
T Consensus 539 LG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMD 617 (1139)
T COG1197 539 LGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMD 617 (1139)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcch
Confidence 444667666555555555555555443333211 112333 344444 66554321 3456
Q ss_pred EEEEccCCCchHHHHH----HHHHcCCCEEEEcchHHHHHHHHHHHHh----CCCceeeecccccc----------ccCC
Q 010534 80 ILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQERE----------EVDG 141 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~----~~l~~~~~~i~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~----------~~~~ 141 (508)
-+|||..|.|||.+|+ .++.+++++.++|||..||+|.++.|++ +++++..+..-... ....
T Consensus 618 RLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~ 697 (1139)
T COG1197 618 RLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK 697 (1139)
T ss_pred heeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC
Confidence 7999999999999975 4556788999999999999999988874 46666665432211 1225
Q ss_pred CcEEEEcceeccc---cCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEc-cCCcchHH--HHH---------H
Q 010534 142 AKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG-DPAAVPLI--QQI---------L 206 (508)
Q Consensus 142 ~~~iv~T~e~~~~---l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~-~~~~~~~~--~~l---------~ 206 (508)
-+++|.|-..+.. .++++++||||-|+.+.. .-..|-.+. ..+.++. +++++|.- ..+ .
T Consensus 698 vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk-----~KEkLK~Lr-~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~ 771 (1139)
T COG1197 698 VDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVK-----HKEKLKELR-ANVDVLTLSATPIPRTLNMSLSGIRDLSVIA 771 (1139)
T ss_pred ccEEEechHhhCCCcEEecCCeEEEechhhcCcc-----HHHHHHHHh-ccCcEEEeeCCCCcchHHHHHhcchhhhhcc
Confidence 5778888777753 489999999999999654 233333333 3333333 22333211 111 1
Q ss_pred hHcCCcEEEEeeeecCCCCCCCCccccccccCCCCEEEEe--eHHHHHHHHHHHHhcC-CCeEEEEcCCCCHHHHHHHHH
Q 010534 207 QVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF--SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQAT 283 (508)
Q Consensus 207 ~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~--s~~~~~~l~~~L~~~~-~~~v~~lhg~l~~~~R~~~~~ 283 (508)
.-+.+.++|..|.....-..... ..+.++..|..+++. -.+.++++++.|++.- ..+|++.||.|+..+-..++.
T Consensus 772 TPP~~R~pV~T~V~~~d~~~ire--AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 772 TPPEDRLPVKTFVSEYDDLLIRE--AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred CCCCCCcceEEEEecCChHHHHH--HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 11223555655543322211111 223455566666655 5899999999998864 458999999999999999999
Q ss_pred HhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 284 RFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 284 ~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.|.+ |+.+|||||.++|.||||| +.++|..+..+ .-.+++.|..||+||.... |+||.+++.+
T Consensus 850 ~F~~--g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~--------fGLsQLyQLRGRVGRS~~~---AYAYfl~p~~ 913 (1139)
T COG1197 850 DFYN--GEYDVLVCTTIIETGIDIPNANTIIIERADK--------FGLAQLYQLRGRVGRSNKQ---AYAYFLYPPQ 913 (1139)
T ss_pred HHHc--CCCCEEEEeeeeecCcCCCCCceEEEecccc--------ccHHHHHHhccccCCccce---EEEEEeecCc
Confidence 9999 9999999999999999997 99988766543 3599999999999999988 9999999864
No 93
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.90 E-value=1.2e-22 Score=214.62 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=83.4
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---------
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN--------- 308 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip--------- 308 (508)
...++||+ |++.++.+++.|.+.+. .+..+||++.+.+|..+.+.++. | .|+||||+++||+||+
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi-~~~~L~a~~~~~E~~ii~~ag~~--g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGI-PHNLLNAQNAAKEAQIIAEAGQK--G--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCC-CEEEecCCChHHHHHHHHHcCCC--C--eEEEEccccccccCCCCCccccccC
Confidence 34566666 89999999999999877 89999999999998888887776 6 6999999999999997
Q ss_pred -ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 309 -v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+..|++++. |..... .||+|||||.|.. |.+..+.+.+
T Consensus 499 GL~vIit~~~---------ps~rid-~qr~GRtGRqG~~---G~s~~~is~e 537 (762)
T TIGR03714 499 GLAVIGTERM---------ENSRVD-LQLRGRSGRQGDP---GSSQFFVSLE 537 (762)
T ss_pred CeEEEEecCC---------CCcHHH-HHhhhcccCCCCc---eeEEEEEccc
Confidence 356667766 334444 9999999999988 8876665544
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=5.1e-23 Score=231.09 Aligned_cols=251 Identities=18% Similarity=0.217 Sum_probs=162.2
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH---H-HcCCCEEEEcchHHHHHHHHHHHHhC----CCce
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVSC 128 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~---l-~~~~~~i~l~P~r~La~q~~~~l~~~----g~~~ 128 (508)
....|+++|+ |+|.+ +.+++++++||||||||+.++.. + ..+++++|++|||+||.|+++.+.++ |+.+
T Consensus 75 ~g~~p~~iQ~~~i~~i--l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRV--LRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred cCCCCcHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 3457999999 99988 66999999999999999864322 2 23568899999999999999998864 4433
Q ss_pred ---eeeccccccc----------cCCCcEEEEcceecc----ccC-CccEEEEccccccCCCCc---------ChHH---
Q 010534 129 ---DLITGQEREE----------VDGAKHRAVTVEMAD----VVS-DYDCAVIDEIQMLGCKTR---------GFSF--- 178 (508)
Q Consensus 129 ---~~~~g~~~~~----------~~~~~~iv~T~e~~~----~l~-~~~~iViDEah~~~~~~r---------g~~~--- 178 (508)
+.++|+.... ..+..++|+||..+. .+. +++++|+||||.+.+..+ |+.-
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH
Confidence 2456653221 124678999985542 123 799999999999986432 3321
Q ss_pred HHHH---------------------h-cccCC--ceEEEccCCcch-HHH-HHHhHcCCcEEE----------EeeeecC
Q 010534 179 TRAL---------------------L-GICAN--ELHLCGDPAAVP-LIQ-QILQVTGDDVKV----------QSYERLS 222 (508)
Q Consensus 179 ~~~l---------------------l-~l~~~--~~~~~~~~~~~~-~~~-~l~~~~~~~~~v----------~~~~~~~ 222 (508)
..++ + .++.. ...++.+++..+ ... .++...- .+.+ .......
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-~~~v~~~~~~~r~I~~~~~~~ 311 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL-GFEVGGGSDTLRNVVDVYVED 311 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc-ceEecCccccccceEEEEEec
Confidence 1111 0 11111 112334443222 111 2221110 0111 1111000
Q ss_pred CCCCCCCcc-ccccccCCCCEEEEeeH---HHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEe-
Q 010534 223 PLVPLNVPL-GSFSNIQTGDCIVTFSR---HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA- 297 (508)
Q Consensus 223 ~~~~~~~~l-~~l~~~~~~~~iv~~s~---~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa- 297 (508)
. .....+ ..+....++.+||+.++ +.++++++.|++.+. ++..+||+++. ..++.|++ |+.+||||
T Consensus 312 ~--~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~-~a~~lhg~~~~----~~l~~Fr~--G~~~vLVat 382 (1171)
T TIGR01054 312 E--DLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGV-KAVAYHATKPK----EDYEKFAE--GEIDVLIGV 382 (1171)
T ss_pred c--cHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCc-eEEEEeCCCCH----HHHHHHHc--CCCCEEEEe
Confidence 0 001112 22233344444444477 999999999998876 89999999974 68899999 99999999
Q ss_pred ---ccccccccccc--ccEEEEcccccc
Q 010534 298 ---SDAIGMGLNLN--ISRIIFSTMKKF 320 (508)
Q Consensus 298 ---T~~~~~Gidip--v~~VI~~~~~~~ 320 (508)
||+++||||+| |++|||+|.|++
T Consensus 383 a~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 383 ASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ccccCcccccCCCCccccEEEEECCCCE
Confidence 59999999996 799999999984
No 95
>PRK09694 helicase Cas3; Provisional
Probab=99.90 E-value=2.1e-22 Score=218.61 Aligned_cols=271 Identities=17% Similarity=0.154 Sum_probs=165.2
Q ss_pred CCCCCCccccchHHHhcCCceEEEEccCCCchHHHHHHHHH---cC---CCEEEEcchHHHHHHHHHHHHh-----C-CC
Q 010534 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLE---SS---SSGIYCGPLRLLAWEVAKRLNK-----A-NV 126 (508)
Q Consensus 59 ~~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~---~~---~~~i~l~P~r~La~q~~~~l~~-----~-g~ 126 (508)
...+++.|+....+ ..++..+++.+|||+|||.+++.+.. .. .+++|..||+++++++++|+.+ + ..
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44688888843322 13577899999999999999865442 22 3667889999999999999874 2 24
Q ss_pred ceeeeccccccc-----------------------------c----CCCcEEEEcceecc---------ccCC----ccE
Q 010534 127 SCDLITGQEREE-----------------------------V----DGAKHRAVTVEMAD---------VVSD----YDC 160 (508)
Q Consensus 127 ~~~~~~g~~~~~-----------------------------~----~~~~~iv~T~e~~~---------~l~~----~~~ 160 (508)
.+.+.+|..... . --++++|+|+..+- .++. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 566666643200 0 01578899983321 1222 348
Q ss_pred EEEccccccCCCCcChHHHHHHhc-ccC--CceEEEccCCcchHHHHHHhHcCCc--------EEEE---------eeee
Q 010534 161 AVIDEIQMLGCKTRGFSFTRALLG-ICA--NELHLCGDPAAVPLIQQILQVTGDD--------VKVQ---------SYER 220 (508)
Q Consensus 161 iViDEah~~~~~~rg~~~~~~ll~-l~~--~~~~~~~~~~~~~~~~~l~~~~~~~--------~~v~---------~~~~ 220 (508)
|||||+|.+... ...+...++. +.+ ..+.++..+-+....+.+....+.. ++.. .+..
T Consensus 443 vIiDEVHAyD~y--m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 443 LIVDEVHAYDAY--MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred EEEechhhCCHH--HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 999999998532 1111122221 111 2233333322223334444432211 1110 0000
Q ss_pred c-------CCCCC-------C-----CCccccccc-cCCCC-EEEEe-eHHHHHHHHHHHHhcCC--CeEEEEcCCCCHH
Q 010534 221 L-------SPLVP-------L-----NVPLGSFSN-IQTGD-CIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPPE 276 (508)
Q Consensus 221 ~-------~~~~~-------~-----~~~l~~l~~-~~~~~-~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lhg~l~~~ 276 (508)
. .+... . ...+..+.+ ...+. ++||+ |++.++++++.|++... ..+..+||++++.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 0 00000 0 000111111 23343 44444 89999999999987642 3799999999999
Q ss_pred HHH----HHHHHh-cCCCCC---eeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCC
Q 010534 277 TRT----RQATRF-NDASSE---FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 345 (508)
Q Consensus 277 ~R~----~~~~~f-~~~~g~---~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~ 345 (508)
+|. ++++.| ++ |+ .+|||||+++|+|+||+++.+|.... +.+.++||+||+||.+.
T Consensus 601 dR~~~E~~vl~~fgk~--g~r~~~~ILVaTQViE~GLDId~DvlItdla-----------PidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKN--GKRNQGRILVATQVVEQSLDLDFDWLITQLC-----------PVDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhc--CCcCCCeEEEECcchhheeecCCCeEEECCC-----------CHHHHHHHHhccCCCCC
Confidence 994 566778 44 44 47999999999999999998887544 47899999999999986
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=3.7e-22 Score=205.15 Aligned_cols=266 Identities=19% Similarity=0.189 Sum_probs=181.8
Q ss_pred CCCCCCccc-cchHHHhc--CCceEEEEccCCCchHHHHHHHHHcCC-CEEEEcchHHHHHHHHHHHHhC-CC--ceeee
Q 010534 59 FTDLTRPHT-WYPLARKK--VRKVILHVGPTNSGKTHQALSRLESSS-SGIYCGPLRLLAWEVAKRLNKA-NV--SCDLI 131 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~--~~~~~iv~~pTGsGKT~~~~~~l~~~~-~~i~l~P~r~La~q~~~~l~~~-g~--~~~~~ 131 (508)
-..++++|+ ++...... .++..++++|||+|||.+++..+..-+ +++|++|+++|+.|+++++... +. .++.+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~ 113 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY 113 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCcccccee
Confidence 456899999 77666321 177899999999999999988886644 5899999999999999888754 33 46777
Q ss_pred ccccccccCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChH-HH-----HH-HhcccCCceEEEccC
Q 010534 132 TGQEREEVDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFS-FT-----RA-LLGICANELHLCGDP 196 (508)
Q Consensus 132 ~g~~~~~~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~-~~-----~~-ll~l~~~~~~~~~~~ 196 (508)
.|+...... ..+.++|+.++.. .+++++||+||||+.... .+. +. .. ++|++++..+..+.
T Consensus 114 ~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~~~~~~~~~~~~~~~LGLTATp~R~D~~- 189 (442)
T COG1061 114 GGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--SYRRILELLSAAYPRLGLTATPEREDGG- 189 (442)
T ss_pred cCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--HHHHHHHhhhcccceeeeccCceeecCC-
Confidence 776665543 6788888755432 147999999999999753 222 21 11 57777765433211
Q ss_pred CcchHHHHHHhHcC---------------C--cEEEEeeee-cCC--------CCCC-C---------------------
Q 010534 197 AAVPLIQQILQVTG---------------D--DVKVQSYER-LSP--------LVPL-N--------------------- 228 (508)
Q Consensus 197 ~~~~~~~~l~~~~~---------------~--~~~v~~~~~-~~~--------~~~~-~--------------------- 228 (508)
....+....| . ++.+..... ... .... .
T Consensus 190 ----~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (442)
T COG1061 190 ----RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIA 265 (442)
T ss_pred ----chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 1111122111 1 111111110 000 0000 0
Q ss_pred --Cccc----ccccc-CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccc
Q 010534 229 --VPLG----SFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (508)
Q Consensus 229 --~~l~----~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~ 300 (508)
..+. .+... ....+++|. +...+..++..+...+. +..+.|..+..+|..+++.|+. |.+++||++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~--~~~it~~t~~~eR~~il~~fr~--g~~~~lv~~~v 341 (442)
T COG1061 266 SERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI--VEAITGETPKEEREAILERFRT--GGIKVLVTVKV 341 (442)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc--eEEEECCCCHHHHHHHHHHHHc--CCCCEEEEeee
Confidence 0000 00111 123455555 79999999999977665 8899999999999999999999 88999999999
Q ss_pred cccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCC
Q 010534 301 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 345 (508)
Q Consensus 301 ~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~ 345 (508)
+..|+|+| ++.+|...... |...|.||+||.-|...
T Consensus 342 l~EGvDiP~~~~~i~~~~t~---------S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 342 LDEGVDIPDADVLIILRPTG---------SRRLFIQRLGRGLRPAE 378 (442)
T ss_pred ccceecCCCCcEEEEeCCCC---------cHHHHHHHhhhhccCCC
Confidence 99999998 99999887743 99999999999999533
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=6.4e-22 Score=184.85 Aligned_cols=286 Identities=18% Similarity=0.228 Sum_probs=185.3
Q ss_pred CCCCCccc-cchH-HHh-cCCceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHh-C-CCceee
Q 010534 60 TDLTRPHT-WYPL-ARK-KVRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK-A-NVSCDL 130 (508)
Q Consensus 60 ~~~~~~q~-~~~~-~~~-~~~~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~-~-g~~~~~ 130 (508)
..+++.|+ +-.. +.. .+.+++++.|-||+|||....+. +..++++.+..|+...+.+++.|++. + +..+..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 46788887 2222 111 36899999999999999995433 34556677779999999999999985 3 588889
Q ss_pred eccccccccCCCcEEEEcc-eeccccCCccEEEEccccccCCCCcChHHHHHHhcccC-Cc-eEEEccCCcchHHHHHHh
Q 010534 131 ITGQEREEVDGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NE-LHLCGDPAAVPLIQQILQ 207 (508)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~-e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~-~~-~~~~~~~~~~~~~~~l~~ 207 (508)
++|+.....+ ++++|+|+ ..+.+-+.+|++||||+|...-. -...+.-++-...+ .. ...+.++.+..+.+++..
T Consensus 176 Lyg~S~~~fr-~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~-~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~~~ 253 (441)
T COG4098 176 LYGDSDSYFR-APLVVATTHQLLRFKQAFDLLIIDEVDAFPFS-DDQSLQYAVKKARKKEGATIYLTATPTKKLERKILK 253 (441)
T ss_pred EecCCchhcc-ccEEEEehHHHHHHHhhccEEEEecccccccc-CCHHHHHHHHHhhcccCceEEEecCChHHHHHHhhh
Confidence 9998877655 88888888 56667788999999999987421 01122222221111 11 122222233333333332
Q ss_pred Hc-----------CCcEEEEeeeecCCCCCC----CC--cc-ccccc-cCC-CCEEEEe-eHHHHHHHHHHHH-hcCCCe
Q 010534 208 VT-----------GDDVKVQSYERLSPLVPL----NV--PL-GSFSN-IQT-GDCIVTF-SRHAIYRLKKAIE-SRGKHL 265 (508)
Q Consensus 208 ~~-----------~~~~~v~~~~~~~~~~~~----~~--~l-~~l~~-~~~-~~~iv~~-s~~~~~~l~~~L~-~~~~~~ 265 (508)
.- +.++++..+.+..+.... +- .+ ..+.+ ... ...++|+ +....++++..|+ +.+...
T Consensus 254 g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~ 333 (441)
T COG4098 254 GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKET 333 (441)
T ss_pred CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccc
Confidence 11 111111111111111100 00 11 11111 122 3455555 7999999999994 455667
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCC
Q 010534 266 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344 (508)
Q Consensus 266 v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g 344 (508)
++.+|+. ...|.+..+.|++ |+.++|++|.++|+|+++| |+..|.-.-.. -.+.+.++|.+||+||.-
T Consensus 334 i~~Vhs~--d~~R~EkV~~fR~--G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~-------vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 334 IASVHSE--DQHRKEKVEAFRD--GKITLLITTTILERGVTFPNVDVFVLGAEHR-------VFTESALVQIAGRVGRSL 402 (441)
T ss_pred eeeeecc--CccHHHHHHHHHc--CceEEEEEeehhhcccccccceEEEecCCcc-------cccHHHHHHHhhhccCCC
Confidence 7888875 4568899999999 9999999999999999997 88766533321 348999999999999987
Q ss_pred CCCCcEEEEEecCCC
Q 010534 345 SKFPVGEVTCLDSED 359 (508)
Q Consensus 345 ~~~~~G~~~~~~~~~ 359 (508)
. +..|.+..+....
T Consensus 403 ~-~PtGdv~FFH~G~ 416 (441)
T COG4098 403 E-RPTGDVLFFHYGK 416 (441)
T ss_pred c-CCCCcEEEEeccc
Confidence 5 4668887776554
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.89 E-value=1.6e-21 Score=204.87 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=86.9
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---cc----
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---IS---- 310 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip---v~---- 310 (508)
...++|++ |...++.+++.|.+.+. ....+||+ +.+|...+..|.. +...|+||||+++||+||+ |.
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi-~~~~Lna~--q~~rEa~ii~~ag--~~g~VtIATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGI-PHNVLNAK--NHEREAEIIAQAG--RKGAVTIATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCC-CeEEeeCC--hHHHHHHHHHhcC--CCceEEEEeccccCCcCCCccchhhcCC
Confidence 34455555 89999999999999887 88899998 7788899999998 7789999999999999994 34
Q ss_pred -EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 311 -~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+||+++. |.|...+.||.||+||.|.. |.+..+.+.
T Consensus 480 l~VI~t~~---------p~s~ri~~q~~GRtGRqG~~---G~s~~~ls~ 516 (745)
T TIGR00963 480 LYVIGTER---------HESRRIDNQLRGRSGRQGDP---GSSRFFLSL 516 (745)
T ss_pred cEEEecCC---------CCcHHHHHHHhccccCCCCC---cceEEEEec
Confidence 8999988 66999999999999999987 766554443
No 99
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=1.9e-21 Score=212.51 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=93.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
..++|||+ ++..+..+.+.|+...+.++..+||+|++.+|.++++.|++++|..+|||||+++++|+|++ +++||++|
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfD 572 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFD 572 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEec
Confidence 44566666 89999999999965444489999999999999999999998545689999999999999996 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+ |+++..|.||+||+||.|.. +...++..+.++
T Consensus 573 l---------P~nP~~~eQRIGR~~RiGQ~-~~V~i~~~~~~~ 605 (956)
T PRK04914 573 L---------PFNPDLLEQRIGRLDRIGQK-HDIQIHVPYLEG 605 (956)
T ss_pred C---------CCCHHHHHHHhcccccCCCC-ceEEEEEccCCC
Confidence 9 78999999999999999986 333445555443
No 100
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.87 E-value=4.6e-22 Score=190.44 Aligned_cols=109 Identities=18% Similarity=0.318 Sum_probs=95.4
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHhcCC--CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-ccc
Q 010534 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NIS 310 (508)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~ 310 (508)
.+.....+|+|+ |+.+|..+.+++.+.+. ..++.+||+..|.+|++.++.|++ +..+.|||||++++|+|| .+-
T Consensus 501 ~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvkflictdvaargldi~g~p 578 (725)
T KOG0349|consen 501 RRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVKFLICTDVAARGLDITGLP 578 (725)
T ss_pred hhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeEEEEEehhhhccccccCCc
Confidence 334455677777 99999999999998765 478999999999999999999999 999999999999999999 699
Q ss_pred EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 311 ~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
++|+..+ |-...+|.||+||+||...- |..+.+..
T Consensus 579 ~~invtl---------pd~k~nyvhrigrvgraerm---glaislva 613 (725)
T KOG0349|consen 579 FMINVTL---------PDDKTNYVHRIGRVGRAERM---GLAISLVA 613 (725)
T ss_pred eEEEEec---------Ccccchhhhhhhccchhhhc---ceeEEEee
Confidence 9999988 66999999999999999876 77766643
No 101
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=1.7e-20 Score=195.12 Aligned_cols=105 Identities=23% Similarity=0.353 Sum_probs=88.3
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCC
Q 010534 265 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344 (508)
Q Consensus 265 ~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g 344 (508)
++.++|++|+...|..++-.|+. |...||+||.+++-|||.|+++|++.+-.- .+++-.|.|++|||||.|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~--g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQ--GHLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccccccchHHHHHHHHHhhc--CceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccc
Confidence 48999999999999999999999 999999999999999999999999987643 678999999999999999
Q ss_pred CCCCcEEEEEecCCCHHHHHhhhcCCCchhhhcCCC
Q 010534 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF 380 (508)
Q Consensus 345 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 380 (508)
.+ ..|.|+.+.-. ...+++++....+.|+-+.-.
T Consensus 1035 FD-~lGnV~FmgiP-~~kv~rLlts~L~diqG~~p~ 1068 (1330)
T KOG0949|consen 1035 FD-TLGNVVFMGIP-RQKVQRLLTSLLPDIQGAYPY 1068 (1330)
T ss_pred cc-cccceEEEeCc-HHHHHHHHHHhhhcccCCCcc
Confidence 86 55777666432 247778887777777654433
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=1.1e-19 Score=202.98 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=168.9
Q ss_pred CCCCCccc-cchHHHh---cCCceEEEEccCCCchHHHHHHH---HHc---CCCEEEEcchHHHHHHHHHHHHhCCCcee
Q 010534 60 TDLTRPHT-WYPLARK---KVRKVILHVGPTNSGKTHQALSR---LES---SSSGIYCGPLRLLAWEVAKRLNKANVSCD 129 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~---~~~~~~iv~~pTGsGKT~~~~~~---l~~---~~~~i~l~P~r~La~q~~~~l~~~g~~~~ 129 (508)
..++++|. ++..+.. ..++..++++|||||||.+++.. +.. .+++++++|+++|+.|..+.+...+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 45899998 8866532 24567999999999999885433 332 25889999999999999999997754332
Q ss_pred e----ecc----ccccccCCCcEEEEcceecc-------------ccCCccEEEEccccccCCCCc--------------
Q 010534 130 L----ITG----QEREEVDGAKHRAVTVEMAD-------------VVSDYDCAVIDEIQMLGCKTR-------------- 174 (508)
Q Consensus 130 ~----~~g----~~~~~~~~~~~iv~T~e~~~-------------~l~~~~~iViDEah~~~~~~r-------------- 174 (508)
. +.+ .......+..++++|+..+. ....+++||+||||+-...+.
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 1 111 11122345788999985431 246799999999998531000
Q ss_pred -ChHHHHHH-------hcccCCceEEE----ccCCc-chHHHHHHhHcCCcE----EEEeeeecC---------------
Q 010534 175 -GFSFTRAL-------LGICANELHLC----GDPAA-VPLIQQILQVTGDDV----KVQSYERLS--------------- 222 (508)
Q Consensus 175 -g~~~~~~l-------l~l~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~----~v~~~~~~~--------------- 222 (508)
...|..++ +|++++..+-. |.... ..+-+.+.. |..+ ++....+..
T Consensus 572 ~~~~yr~iL~yFdA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~D--G~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~ 649 (1123)
T PRK11448 572 YVSKYRRVLDYFDAVKIGLTATPALHTTEIFGEPVYTYSYREAVID--GYLIDHEPPIRIETRLSQEGIHFEKGEEVEVI 649 (1123)
T ss_pred HHHHHHHHHhhcCccEEEEecCCccchhHHhCCeeEEeeHHHHHhc--CCcccCcCCEEEEEEeccccccccccchhhhc
Confidence 12234333 34444432110 00000 001111110 1000 000000000
Q ss_pred -----CCC--CCCC----c-----------------c----ccccccCCCCEEEEe-eHHHHHHHHHHHHhcC-------
Q 010534 223 -----PLV--PLNV----P-----------------L----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRG------- 262 (508)
Q Consensus 223 -----~~~--~~~~----~-----------------l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~------- 262 (508)
... .... . + ..+....+++.+||+ ++++++.+++.|.+..
T Consensus 650 ~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~ 729 (1123)
T PRK11448 650 NTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQV 729 (1123)
T ss_pred chhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 0000 0 0 001111235566666 8999999998887631
Q ss_pred -CCeEEEEcCCCCHHHHHHHHHHhcCCCCCe-eEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhcc
Q 010534 263 -KHLCSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339 (508)
Q Consensus 263 -~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~-~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GR 339 (508)
...+..++|+.+ ++..+++.|++ +.. +|+|+++++.+|+|+| +++||++...+ |...|+||+||
T Consensus 730 ~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk---------S~~lf~QmIGR 796 (1123)
T PRK11448 730 EDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR---------SRILYEQMLGR 796 (1123)
T ss_pred CccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecCCC---------CHHHHHHHHhh
Confidence 124667899875 46689999998 554 7999999999999997 99999998844 99999999999
Q ss_pred CCCCCC--CCCcEEEEEe
Q 010534 340 AGRYGS--KFPVGEVTCL 355 (508)
Q Consensus 340 agR~g~--~~~~G~~~~~ 355 (508)
+.|..+ ++..+.++-+
T Consensus 797 gtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 797 ATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred hccCCccCCCceEEEEeh
Confidence 999866 2344555443
No 103
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3e-21 Score=173.16 Aligned_cols=276 Identities=17% Similarity=0.179 Sum_probs=170.0
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHHc-CC--CEEEEcchHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES-SS--SGIYCGPLRL 112 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~-~~--~~i~l~P~r~ 112 (508)
|.|++.+++.+- ||..|+++|. .+|.+ .-+-+++-.|..|.|||.++ +|.+.. .| .+++++.||+
T Consensus 49 lkpellraivdc-----gfehpsevqhecipqa--ilgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 49 LKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cCHHHHHHHHhc-----cCCCchHhhhhhhhHH--hhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 678888999888 9999999999 99998 45999999999999999985 333332 23 3577899999
Q ss_pred HHHHHHHHHH---hC--CCceeeeccccccccC------CCcEEEEcceec-c-------ccCCccEEEEccccccCCCC
Q 010534 113 LAWEVAKRLN---KA--NVSCDLITGQEREEVD------GAKHRAVTVEMA-D-------VVSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 113 La~q~~~~l~---~~--g~~~~~~~g~~~~~~~------~~~~iv~T~e~~-~-------~l~~~~~iViDEah~~~~~~ 173 (508)
||-|+.+... ++ ++++.+..|+...... .+.+++.||..+ . .++++.+.|+|||+.+.+.-
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999976554 43 7889999998655432 344567787432 2 35889999999999876421
Q ss_pred cChHHHHHHhcccCCceE-EEccCCcchHHHHHHhHcC-CcEEEEeeeecCCCCCCCCccccccccCCCCEEEEe-eHHH
Q 010534 174 RGFSFTRALLGICANELH-LCGDPAAVPLIQQILQVTG-DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHA 250 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~ 250 (508)
--+.-..-+..++...-+ +.++++...-++.++...- ++.++... ....+ .+.-+.+. -+=. -.+.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KL-----tLHGLqQ~-----YvkLke~eK 270 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKL-----TLHGLQQY-----YVKLKENEK 270 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhh-----hhhhHHHH-----HHhhhhhhh
Confidence 111112334444444333 4444444444444443321 11111000 00000 00001000 0000 0111
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcccccccCcccccCC
Q 010534 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLT 329 (508)
Q Consensus 251 ~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s 329 (508)
-.++.+.|.......+.++--+.. |.. |.+ + +|||+++++|+|| .+..|++||+ |-+
T Consensus 271 Nrkl~dLLd~LeFNQVvIFvKsv~---Rl~----f~k-----r-~vat~lfgrgmdiervNi~~NYdm---------p~~ 328 (387)
T KOG0329|consen 271 NRKLNDLLDVLEFNQVVIFVKSVQ---RLS----FQK-----R-LVATDLFGRGMDIERVNIVFNYDM---------PED 328 (387)
T ss_pred hhhhhhhhhhhhhcceeEeeehhh---hhh----hhh-----h-hHHhhhhccccCcccceeeeccCC---------CCC
Confidence 122333333322212333322221 111 432 3 9999999999999 5999999999 669
Q ss_pred hhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 330 VPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 330 ~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
..+|+||.|||||.|.+ |..+.+.+++
T Consensus 329 ~DtYlHrv~rAgrfGtk---glaitfvs~e 355 (387)
T KOG0329|consen 329 SDTYLHRVARAGRFGTK---GLAITFVSDE 355 (387)
T ss_pred chHHHHHhhhhhccccc---cceeehhcch
Confidence 99999999999999998 8888876654
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.82 E-value=1.8e-19 Score=196.12 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=168.4
Q ss_pred CCccc-cchHHHhc-CCc-eEEEEccCCCchHHHHHHHH----Hc----CCCEEEEcchHHHHHHHHHHHHhC---CCce
Q 010534 63 TRPHT-WYPLARKK-VRK-VILHVGPTNSGKTHQALSRL----ES----SSSGIYCGPLRLLAWEVAKRLNKA---NVSC 128 (508)
Q Consensus 63 ~~~q~-~~~~~~~~-~~~-~~iv~~pTGsGKT~~~~~~l----~~----~~~~i~l~P~r~La~q~~~~l~~~---g~~~ 128 (508)
.+.|. +...+... ... .+++.+|||+|||++++.+. .+ ..+++++.|+|.+..++++++.+. +...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~ 276 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVI 276 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccc
Confidence 44455 44444333 355 89999999999999964332 22 357899999999999999999853 2222
Q ss_pred ee-eccccccccCCCc-----EEEEcc----------------eeccc-----------cCCccEEEEccccccCCCCcC
Q 010534 129 DL-ITGQEREEVDGAK-----HRAVTV----------------EMADV-----------VSDYDCAVIDEIQMLGCKTRG 175 (508)
Q Consensus 129 ~~-~~g~~~~~~~~~~-----~iv~T~----------------e~~~~-----------l~~~~~iViDEah~~~~~~rg 175 (508)
+. .+|.......... ....|. ..+.. .-..+++|+||+|.+.+.. .
T Consensus 277 ~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~-~ 355 (733)
T COG1203 277 GKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET-M 355 (733)
T ss_pred cccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-h
Confidence 22 2332221111111 222221 11110 0236799999999998652 2
Q ss_pred hHHHHHHhc---ccCCceEEEccCCcchHHHHHHhHcCCcEEEEee------------eecCCCCCCCC----cc-cccc
Q 010534 176 FSFTRALLG---ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY------------ERLSPLVPLNV----PL-GSFS 235 (508)
Q Consensus 176 ~~~~~~ll~---l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~------------~~~~~~~~~~~----~l-~~l~ 235 (508)
......++. .....+.++.++-+.-+.+.+....+....+... .+......... .. ....
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISE 435 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchh
Confidence 222222211 1122333333332323333343433332222111 00000111111 00 0111
Q ss_pred cc--CCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcC--CCCCeeEEEecccccccccccccE
Q 010534 236 NI--QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISR 311 (508)
Q Consensus 236 ~~--~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~~~Gidipv~~ 311 (508)
.. .++..+|++|.+.|.++++.|+..+. .++.+||.+...+|.+.++.+.+ ..+...|+|||+++|.|+|++.+.
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~ 514 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDV 514 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCe
Confidence 11 23445667799999999999999887 89999999999999888885442 125678999999999999999998
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+|-- +.+..+++||+||++|.|.. ..|.++.....+
T Consensus 515 mITe-----------~aPidSLIQR~GRv~R~g~~-~~~~~~v~~~~~ 550 (733)
T COG1203 515 LITE-----------LAPIDSLIQRAGRVNRHGKK-ENGKIYVYNDEE 550 (733)
T ss_pred eeec-----------CCCHHHHHHHHHHHhhcccc-cCCceeEeeccc
Confidence 8743 44799999999999999943 337776665544
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.3e-17 Score=176.44 Aligned_cols=304 Identities=15% Similarity=0.142 Sum_probs=184.0
Q ss_pred CCCCCccc-cchHHHhc--CCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHH-hCCCceeee
Q 010534 60 TDLTRPHT-WYPLARKK--VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLN-KANVSCDLI 131 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~--~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~-~~g~~~~~~ 131 (508)
..++..|+ ++..+... ..+..++.|.||||||.++++.+ .+++++|+++|-.+|..|+.++|+ .+|.++.++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 46777888 88777654 35889999999999999987665 346688999999999999999998 579999988
Q ss_pred ccccccc---------c-CCCcEEEEcc-eeccccCCccEEEEccccccCCCC----cChHHHHHH-hcccCCceEEEcc
Q 010534 132 TGQEREE---------V-DGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKT----RGFSFTRAL-LGICANELHLCGD 195 (508)
Q Consensus 132 ~g~~~~~---------~-~~~~~iv~T~-e~~~~l~~~~~iViDEah~~~~~~----rg~~~~~~l-l~l~~~~~~~~~~ 195 (508)
+++-... . ....+++.|- -++..++++++|||||-|.-+..+ |.++-.-++ .+-......++|+
T Consensus 277 HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgS 356 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGS 356 (730)
T ss_pred cccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEec
Confidence 8754322 1 2344555553 455668999999999999976432 223322222 2222334455565
Q ss_pred CCcchHHHHHHhHcCCcEEE-EeeeecC---------------CCCC----CCCccccccc-cCCC-CEEEEeeHH----
Q 010534 196 PAAVPLIQQILQVTGDDVKV-QSYERLS---------------PLVP----LNVPLGSFSN-IQTG-DCIVTFSRH---- 249 (508)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~v-~~~~~~~---------------~~~~----~~~~l~~l~~-~~~~-~~iv~~s~~---- 249 (508)
+++. ++.+.......+.. .-..|.. +... ....+..+.+ +..| ..++|+.|+
T Consensus 357 ATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~ 434 (730)
T COG1198 357 ATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP 434 (730)
T ss_pred CCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc
Confidence 4432 33333222111111 1111111 0000 0000011110 1111 111121211
Q ss_pred ---------------------------------------------------------HHHHHHHHHHhc-CCCeEEEEcC
Q 010534 250 ---------------------------------------------------------AIYRLKKAIESR-GKHLCSIVYG 271 (508)
Q Consensus 250 ---------------------------------------------------------~~~~l~~~L~~~-~~~~v~~lhg 271 (508)
.++++.+.|++. +..++..+.+
T Consensus 435 ~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~ 514 (730)
T COG1198 435 LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDS 514 (730)
T ss_pred eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEcc
Confidence 145566666554 3457888888
Q ss_pred CCCHHHH--HHHHHHhcCCCCCeeEEEeccccccccccc-ccE--EEEcccccccCc-ccccCChhhHHhhhccCCCCCC
Q 010534 272 SLPPETR--TRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR--IIFSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGS 345 (508)
Q Consensus 272 ~l~~~~R--~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~--VI~~~~~~~d~~-~~~p~s~~~~~Qr~GRagR~g~ 345 (508)
+...... ...+..|.+ |+.+|||.|++++.|.|+| +.. |++.|..-+.++ +........+.|-+|||||.+.
T Consensus 515 Dtt~~k~~~~~~l~~~~~--ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~ 592 (730)
T COG1198 515 DTTRRKGALEDLLDQFAN--GEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK 592 (730)
T ss_pred ccccchhhHHHHHHHHhC--CCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC
Confidence 7665432 567889999 9999999999999999997 665 456666555554 4444578899999999999966
Q ss_pred CCCcEEEEEecCCCHHHHHhhhcC
Q 010534 346 KFPVGEVTCLDSEDLPLLHKSLLE 369 (508)
Q Consensus 346 ~~~~G~~~~~~~~~~~~~~~~~~~ 369 (508)
. +..++-++.++. +.++.....
T Consensus 593 ~-G~VvIQT~~P~h-p~i~~~~~~ 614 (730)
T COG1198 593 P-GEVVIQTYNPDH-PAIQALKRG 614 (730)
T ss_pred C-CeEEEEeCCCCc-HHHHHHHhc
Confidence 4 222233444443 444444433
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.4e-17 Score=177.81 Aligned_cols=93 Identities=23% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccccc--------
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS-------- 310 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~-------- 310 (508)
..++|++ |...++.+++.|.+.+. ...++||++...+|..+.+.|+. |. |+||||+++||+||-..
T Consensus 445 ~PVLVgt~Sie~sE~ls~~L~~~gi-~h~vLnak~~q~Ea~iia~Ag~~--G~--VtIATNmAGRGtDI~Lggn~~~~~~ 519 (896)
T PRK13104 445 QPVLVGTVSIEASEFLSQLLKKENI-KHQVLNAKFHEKEAQIIAEAGRP--GA--VTIATNMAGRGTDIVLGGSLAADLA 519 (896)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHcCC-CeEeecCCCChHHHHHHHhCCCC--Cc--EEEeccCccCCcceecCCchhhhhh
Confidence 3455555 79999999999999887 89999999999999999999999 74 99999999999999543
Q ss_pred -------------------------------EEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 311 -------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 311 -------------------------------~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+||-. .++-|..-=.|-.|||||-|..
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT---------erhesrRID~QLrGRaGRQGDP 577 (896)
T PRK13104 520 NLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGS---------ERHESRRIDNQLRGRAGRQGDP 577 (896)
T ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEee---------ccCchHHHHHHhccccccCCCC
Confidence 23322 3356788889999999999987
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=2.9e-17 Score=174.55 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=86.3
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc----cc---
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----IS--- 310 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip----v~--- 310 (508)
...++|++ |...++.+++.|.+.+. ....+||++...++..+.+.++. |. |+||||+++||.||+ |.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~gi-~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAGI-PHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-CeeEecCCcHHHHHHHHHhcCCC--ce--EEEEeccccCCCCCCCCcchhhhC
Confidence 34456655 89999999999999887 89999999998888888888887 65 999999999999993 67
Q ss_pred --EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 311 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 311 --~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
+||+++. |.|...+.|+.|||||.|.. |.+..+.
T Consensus 515 GLhVI~te~---------pes~ri~~Ql~GRtGRqG~~---G~s~~~~ 550 (796)
T PRK12906 515 GLAVIGTER---------HESRRIDNQLRGRSGRQGDP---GSSRFYL 550 (796)
T ss_pred CcEEEeeec---------CCcHHHHHHHhhhhccCCCC---cceEEEE
Confidence 9999987 66999999999999999987 6654443
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=4.2e-17 Score=173.99 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=78.3
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccccc--------
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS-------- 310 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~-------- 310 (508)
..++||+ |...++.+++.|.+.+. ....+||. +.+|...+..|.. +...|+||||+++||+||+..
T Consensus 431 rpVLIft~Si~~se~Ls~~L~~~gi-~~~vLnak--q~eREa~Iia~Ag--~~g~VtIATNmAGRGtDI~LgGn~~~~~~ 505 (830)
T PRK12904 431 QPVLVGTVSIEKSELLSKLLKKAGI-PHNVLNAK--NHEREAEIIAQAG--RPGAVTIATNMAGRGTDIKLGGNPEMLAA 505 (830)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCC-ceEeccCc--hHHHHHHHHHhcC--CCceEEEecccccCCcCccCCCchhhhhh
Confidence 3456666 89999999999999877 89999996 7789999999998 888999999999999999765
Q ss_pred -------------------------------EEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 311 -------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 311 -------------------------------~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+||-. .++-|..-=.|-.|||||-|..
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigT---------erhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 506 ALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGT---------ERHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEec---------ccCchHHHHHHhhcccccCCCC
Confidence 34433 3366888889999999999987
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.74 E-value=5.2e-17 Score=178.51 Aligned_cols=285 Identities=17% Similarity=0.161 Sum_probs=177.2
Q ss_pred CCCCccc-cchHHHh--cCCceEEEEccCCCchHHHHHHHH---Hc----CCCEEEEcchHHHHHHHHHHHHhC--CCce
Q 010534 61 DLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSRL---ES----SSSGIYCGPLRLLAWEVAKRLNKA--NVSC 128 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~--~~~~~~iv~~pTGsGKT~~~~~~l---~~----~~~~i~l~P~r~La~q~~~~l~~~--g~~~ 128 (508)
.|+++|. .+..+.. .++.+.|+.-++|.|||.+++..+ .. .+..|||+|. .+..++.+.+.++ ...+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 5788887 5554432 256788999999999999975443 22 2467999997 4557788888765 3556
Q ss_pred eeecccccc---------ccCCCcEEEEcceeccc----c--CCccEEEEccccccCCCCcChHHHHHHhcccCCc-eEE
Q 010534 129 DLITGQERE---------EVDGAKHRAVTVEMADV----V--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHL 192 (508)
Q Consensus 129 ~~~~g~~~~---------~~~~~~~iv~T~e~~~~----l--~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~-~~~ 192 (508)
..++|.... ......++++|++++.. + -.+++||+||||.+... ......++..+.+.. +.+
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a~~RLLL 325 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFSTNYRLLI 325 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCH--HHHHHHHHHHhhcCcEEEE
Confidence 666775321 11245678888877632 2 46899999999999753 333344443333221 222
Q ss_pred EccCCcch------------------------------------HHHHHHh----------------HcCCcEEEEeeee
Q 010534 193 CGDPAAVP------------------------------------LIQQILQ----------------VTGDDVKVQSYER 220 (508)
Q Consensus 193 ~~~~~~~~------------------------------------~~~~l~~----------------~~~~~~~v~~~~~ 220 (508)
.|++.... .+..+.. ..+...+...+..
T Consensus 326 TGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~ 405 (1033)
T PLN03142 326 TGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVG 405 (1033)
T ss_pred ecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeC
Confidence 22221000 0000000 0011111111000
Q ss_pred cCCCC---------------------------------------------------CC------CCcc---c-ccccc-C
Q 010534 221 LSPLV---------------------------------------------------PL------NVPL---G-SFSNI-Q 238 (508)
Q Consensus 221 ~~~~~---------------------------------------------------~~------~~~l---~-~l~~~-~ 238 (508)
+.+.. .. ...+ . .+.++ .
T Consensus 406 LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~ 485 (1033)
T PLN03142 406 MSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKE 485 (1033)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHh
Confidence 00000 00 0000 0 00001 2
Q ss_pred CCCEEEEee--HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCC-CCeeEEEeccccccccccc-ccEEEE
Q 010534 239 TGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 239 ~~~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~-g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
.|..+++|| ......+.+.|...+. ..+.+||+++.++|..+++.|++++ +...+|++|.+++.|||+. +++||+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~g~-~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYRGY-QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHcCC-cEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 344555554 6667778888877766 8899999999999999999998733 3456899999999999995 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+|. |+++....|+.||+.|.|.. ..-.||.+...+
T Consensus 565 yD~---------dWNP~~d~QAidRaHRIGQk-k~V~VyRLIt~g 599 (1033)
T PLN03142 565 YDS---------DWNPQVDLQAQDRAHRIGQK-KEVQVFRFCTEY 599 (1033)
T ss_pred eCC---------CCChHHHHHHHHHhhhcCCC-ceEEEEEEEeCC
Confidence 999 88999999999999999986 445667776654
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.1e-15 Score=159.50 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=77.1
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccccc---------
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS--------- 310 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~--------- 310 (508)
.++|++ |...++.+++.|...+. ...++|++.+..+|..+.+.|+. |. |+||||+++||.||-..
T Consensus 451 pVLV~t~sv~~se~ls~~L~~~gi-~~~vLnak~~~~Ea~ii~~Ag~~--G~--VtIATnmAGRGTDIkLggn~~~~~~~ 525 (908)
T PRK13107 451 PVLVGTVSIEQSELLARLMVKEKI-PHEVLNAKFHEREAEIVAQAGRT--GA--VTIATNMAGRGTDIVLGGNWNMEIEA 525 (908)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-CeEeccCcccHHHHHHHHhCCCC--Cc--EEEecCCcCCCcceecCCchHHhhhh
Confidence 344444 79999999999999877 88899999999999999999998 76 99999999999999543
Q ss_pred -----------------------------EEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 311 -----------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 311 -----------------------------~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+||-. .++-|..-=.|-.|||||-|..
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT---------erheSrRID~QLrGRaGRQGDP 581 (908)
T PRK13107 526 LENPTAEQKAKIKADWQIRHDEVVAAGGLHILGT---------ERHESRRIDNQLRGRAGRQGDA 581 (908)
T ss_pred hcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEec---------ccCchHHHHhhhhcccccCCCC
Confidence 34433 2355778889999999999987
No 111
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.67 E-value=2.5e-16 Score=163.10 Aligned_cols=358 Identities=15% Similarity=0.095 Sum_probs=208.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC----C-----CEEEEcchHHHHHHHHHHHHh-CCCceeeecccccccc-----C
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS----S-----SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREEV-----D 140 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~----~-----~~i~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~-----~ 140 (508)
.+..+++.+.||+|||+++.+.|+++ . .+.++.|+|..+..+++++.. .+-.++-..|...+.. .
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prp 471 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRP 471 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccc
Confidence 58999999999999999988777653 2 447779999999999999973 4445555555554432 2
Q ss_pred CCcEEEEcceec-----cccCCccEEEEccccccCCCCcChHHHHHHhcccCC--ce----------------------E
Q 010534 141 GAKHRAVTVEMA-----DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN--EL----------------------H 191 (508)
Q Consensus 141 ~~~~iv~T~e~~-----~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~--~~----------------------~ 191 (508)
...+..||.+.+ ..+..+.++|+||.|++... +--+..++.++..+ .+ .
T Consensus 472 yg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~ 549 (1282)
T KOG0921|consen 472 YGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPD 549 (1282)
T ss_pred ccceeeeccchhhhhhhhcccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccc
Confidence 456788998654 34688999999999999654 21111111111110 01 1
Q ss_pred EEccCCcchHHHHHH--------hHcCCcEEEEeeee----cCCCCCCCC------------------------------
Q 010534 192 LCGDPAAVPLIQQIL--------QVTGDDVKVQSYER----LSPLVPLNV------------------------------ 229 (508)
Q Consensus 192 ~~~~~~~~~~~~~l~--------~~~~~~~~v~~~~~----~~~~~~~~~------------------------------ 229 (508)
+....++.+.-.-+. ...+.+.....+.. ..+.+.+.+
T Consensus 550 ~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l 629 (1282)
T KOG0921|consen 550 VTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGL 629 (1282)
T ss_pred eeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHH
Confidence 111112221111111 11122222211110 000000000
Q ss_pred ---ccccc-cccCCCCEEEEe-eHHHHHHHHHHHHhcC------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEec
Q 010534 230 ---PLGSF-SNIQTGDCIVTF-SRHAIYRLKKAIESRG------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298 (508)
Q Consensus 230 ---~l~~l-~~~~~~~~iv~~-s~~~~~~l~~~L~~~~------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT 298 (508)
.+..+ .+.-.|-+++|+ ....+..|+..+.... ...+.+.|+.++..+..++.+.... |..++|++|
T Consensus 630 ~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~--gv~kii~st 707 (1282)
T KOG0921|consen 630 IEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE--GVTKIILST 707 (1282)
T ss_pred HHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc--ccccccccc
Confidence 00000 001234455565 6888888887775531 2257888988877755555444444 999999999
Q ss_pred ccccccccc-cccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhc
Q 010534 299 DAIGMGLNL-NISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368 (508)
Q Consensus 299 ~~~~~Gidi-pv~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~ 368 (508)
++++..+++ ++.+||+.+..+ |... ...|.|.-+..||.||+||..+ |.|+.++..- .++.+-.
T Consensus 708 niaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~----G~~f~lcs~a--rF~~l~~ 781 (1282)
T KOG0921|consen 708 NIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP----GFCFHLCSRA--RFEALED 781 (1282)
T ss_pred ceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc----cccccccHHH--HHHHHHh
Confidence 999999999 689998766543 1111 3578899999999999999998 8898887764 5555555
Q ss_pred CCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCC
Q 010534 369 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448 (508)
Q Consensus 369 ~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~ 448 (508)
...+++.+.++....+.++... -.++..++. ..+.++.-.........+...+.+.....++..++. +...|+
T Consensus 782 ~~t~em~r~plhemalTikll~----l~SI~~fl~--kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~-la~l~i 854 (1282)
T KOG0921|consen 782 HGTAEMFRTPLHEIALTIKLLR----LGSIGEFLG--KALQPPPYDAVIEAEAVLREMGALDANDELTPLGRM-LARLPI 854 (1282)
T ss_pred cCcHhhhcCccHHHHhhHHHHH----hhhHHHHHh--hccCCCchhhccCchHHHHHhhhhhccCcccchhhh-hhhccC
Confidence 6666666666655555554311 122333321 122233333333333455556666655566666666 556665
Q ss_pred CC
Q 010534 449 DM 450 (508)
Q Consensus 449 ~~ 450 (508)
..
T Consensus 855 ep 856 (1282)
T KOG0921|consen 855 EP 856 (1282)
T ss_pred cc
Confidence 43
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.67 E-value=4.6e-16 Score=144.25 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=112.3
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----Hc-----CCCEEEEcch
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-----SSSGIYCGPL 110 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~-----~~~~i~l~P~ 110 (508)
+++.+.+.+.+. ++..+++.|. +++.+ .+++++++.+|||+|||++++..+ .. +++++|++|+
T Consensus 6 ~~~~i~~~l~~~-----~~~~~~~~Q~~~~~~~--~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYAL-----GFEKPTPIQARAIPPL--LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCC
Confidence 667788888887 8999999999 99888 448999999999999999864433 22 2368999999
Q ss_pred HHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCC
Q 010534 111 RLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 111 r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (508)
++|+.|+...+..+ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||+|++.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~ 158 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM 158 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc
Confidence 99999999888754 66777777754321 126789999986542 2477999999999998755
Q ss_pred CcChHHHHHHhcccCCceEEEccCCcchHHHHHH
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQIL 206 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~ 206 (508)
.++......+-.+......+..+++..+....+.
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 159 GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHH
Confidence 3343344444444443334444444444444444
No 113
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.3e-14 Score=155.19 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=86.1
Q ss_pred cCCCC---CCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHh----CC
Q 010534 58 DFTDL---TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK----AN 125 (508)
Q Consensus 58 ~~~~~---~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~----~g 125 (508)
|+..+ +++|. .+|.+ ..+++++..++||+|||+++..++. .+..+++++|+++||.|.++.+.+ +|
T Consensus 86 G~~~p~~~tp~qvQ~I~~i--~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAI--AMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred cccCCCCCChHHHHHhhhh--hcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 66666 99999 99988 4578899999999999999754443 445678899999999999998875 47
Q ss_pred Cceeeeccccccc----cCCCcEEEEcceec--ccc--------------CCccEEEEccccccC
Q 010534 126 VSCDLITGQEREE----VDGAKHRAVTVEMA--DVV--------------SDYDCAVIDEIQMLG 170 (508)
Q Consensus 126 ~~~~~~~g~~~~~----~~~~~~iv~T~e~~--~~l--------------~~~~~iViDEah~~~ 170 (508)
+.++.+.|+.... .-...++++||..+ +.+ +.+.++||||||.+.
T Consensus 164 LsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 8888888865432 12578999999443 332 356899999999885
No 114
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.64 E-value=6.7e-16 Score=119.70 Aligned_cols=76 Identities=34% Similarity=0.562 Sum_probs=70.6
Q ss_pred HHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHh
Q 010534 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (508)
Q Consensus 257 ~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Q 335 (508)
.|+..+. ++..+||++++++|..+++.|++ +..+|||||+++++|+|+| ++.||+++. |.+..+|.|
T Consensus 2 ~L~~~~~-~~~~i~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gid~~~~~~vi~~~~---------~~~~~~~~Q 69 (78)
T PF00271_consen 2 FLEKKGI-KVAIIHGDMSQKERQEILKKFNS--GEIRVLIATDILGEGIDLPDASHVIFYDP---------PWSPEEYIQ 69 (78)
T ss_dssp HHHHTTS-SEEEESTTSHHHHHHHHHHHHHT--TSSSEEEESCGGTTSSTSTTESEEEESSS---------ESSHHHHHH
T ss_pred ChHHCCC-cEEEEECCCCHHHHHHHHHHhhc--cCceEEEeecccccccccccccccccccc---------CCCHHHHHH
Confidence 4666666 89999999999999999999999 8889999999999999997 999999999 679999999
Q ss_pred hhccCCCCC
Q 010534 336 IAGRAGRYG 344 (508)
Q Consensus 336 r~GRagR~g 344 (508)
++||+||.|
T Consensus 70 ~~GR~~R~g 78 (78)
T PF00271_consen 70 RIGRAGRIG 78 (78)
T ss_dssp HHTTSSTTT
T ss_pred HhhcCCCCC
Confidence 999999986
No 115
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.64 E-value=2.3e-14 Score=141.99 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=96.5
Q ss_pred eeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcc
Q 010534 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVE 324 (508)
Q Consensus 246 ~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~ 324 (508)
.|++.++.|.++|.+.|. ++.++|+++..-+|.++++..+. |..+|||+-|.+-.|+|+| |..|.+.|..| .
T Consensus 454 LTKkmAEdLT~Yl~e~gi-kv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLREGLDiPEVsLVAIlDADK----e 526 (663)
T COG0556 454 LTKKMAEDLTEYLKELGI-KVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDADK----E 526 (663)
T ss_pred ehHHHHHHHHHHHHhcCc-eEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhhccCCCcceeEEEEeecCc----c
Confidence 389999999999999998 99999999999999999999999 9999999999999999999 99988777654 1
Q ss_pred cccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhcC
Q 010534 325 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE 369 (508)
Q Consensus 325 ~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~~ 369 (508)
--..|-.+++|-+|||+|.-. |.|+.+.+.-...+++.++.
T Consensus 527 GFLRse~SLIQtIGRAARN~~----GkvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 527 GFLRSERSLIQTIGRAARNVN----GKVILYADKITDSMQKAIDE 567 (663)
T ss_pred ccccccchHHHHHHHHhhccC----CeEEEEchhhhHHHHHHHHH
Confidence 112388999999999999887 88887776544566655543
No 116
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.63 E-value=5e-15 Score=158.40 Aligned_cols=302 Identities=19% Similarity=0.234 Sum_probs=208.0
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc---CCCEEEEcchHHHHHHHHHHHHh-----CCCcee
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES---SSSGIYCGPLRLLAWEVAKRLNK-----ANVSCD 129 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~---~~~~i~l~P~r~La~q~~~~l~~-----~g~~~~ 129 (508)
|.+.+++|. .++... ..+.++++.+|+|||||.+|-.+++. .++++|+.|.-+.+..++..+.+ .|..+.
T Consensus 1141 f~~~n~iqtqVf~~~y-~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLY-NTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred ccccCCceEEEEeeee-cccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 566689998 777664 57899999999999999999777765 35789999999999998887763 277788
Q ss_pred eecccccccc---CCCcEEEEcceecccc---CCccEEEEccccccCCCCcChHH-----HHHHhcccCCceEEEccCCc
Q 010534 130 LITGQEREEV---DGAKHRAVTVEMADVV---SDYDCAVIDEIQMLGCKTRGFSF-----TRALLGICANELHLCGDPAA 198 (508)
Q Consensus 130 ~~~g~~~~~~---~~~~~iv~T~e~~~~l---~~~~~iViDEah~~~~~~rg~~~-----~~~ll~l~~~~~~~~~~~~~ 198 (508)
.++|+..... ....++++||+.++.+ +.+++.|.||.|++++ ..|... ++.+..-.-+.+++++-+..
T Consensus 1220 ~l~ge~s~~lkl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1220 KLTGETSLDLKLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALSSS 1298 (1674)
T ss_pred ecCCccccchHHhhhcceEEechhHHHHHhhhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEeehh
Confidence 8888765443 4788999999988765 7899999999999984 334331 11111111234555555555
Q ss_pred chHHHHHHhHcC-CcEEEEeeeecCCCCCCCCcc-----------------ccccc--cCCCCEEEEe-eHHHHHHHHHH
Q 010534 199 VPLIQQILQVTG-DDVKVQSYERLSPLVPLNVPL-----------------GSFSN--IQTGDCIVTF-SRHAIYRLKKA 257 (508)
Q Consensus 199 ~~~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~l-----------------~~l~~--~~~~~~iv~~-s~~~~~~l~~~ 257 (508)
....+++..... ..+.+....|+.|+......+ ..+.+ ..++..+||. +++.+..++..
T Consensus 1299 lana~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~ 1378 (1674)
T KOG0951|consen 1299 LANARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVD 1378 (1674)
T ss_pred hccchhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhc
Confidence 555555532211 123333334455543221111 11111 1344455555 78877665443
Q ss_pred HHh-----------------------cCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEE
Q 010534 258 IES-----------------------RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 258 L~~-----------------------~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~ 314 (508)
+-. .-...|. |-+++..+..-+...|.. |.+.|+|...- ..|+-.-...||.
T Consensus 1379 ~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~--g~i~v~v~s~~-~~~~~~~~~lVvv 1453 (1674)
T KOG0951|consen 1379 LVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEA--GAIQVCVMSRD-CYGTKLKAHLVVV 1453 (1674)
T ss_pred cchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhc--CcEEEEEEEcc-cccccccceEEEE
Confidence 321 1122344 888999888889999999 99999988877 8898888888999
Q ss_pred cccccccCc--ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhcCCCch
Q 010534 315 STMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSPM 373 (508)
Q Consensus 315 ~~~~~~d~~--~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~ 373 (508)
.|...|||. ...+.+.+...|+.|+|.|. |.|+.+... +..++++++..+.|-
T Consensus 1454 mgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~------~k~vi~~~~~~k~yykkfl~e~lPv 1509 (1674)
T KOG0951|consen 1454 MGTQYYDGKEHSYEDYPIAELLQMVGLASGA------GKCVIMCHTPKKEYYKKFLYEPLPV 1509 (1674)
T ss_pred ecceeecccccccccCchhHHHHHhhhhcCC------ccEEEEecCchHHHHHHhccCcCch
Confidence 999999997 56778999999999999994 445555443 347889999888774
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.63 E-value=2.1e-14 Score=155.06 Aligned_cols=264 Identities=16% Similarity=0.166 Sum_probs=150.4
Q ss_pred CceEEEEccCCCchHHHHHH---HHH---cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc---ccc--ccCCCcEE
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLE---SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ---ERE--EVDGAKHR 145 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~---~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~---~~~--~~~~~~~i 145 (508)
++..++..+||||||..++. .+. ...++++++|+++|..|+.+.+..++..+....+. ... ......++
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEE
Confidence 46899999999999998633 222 34578999999999999999999876532211111 111 12246788
Q ss_pred EEcceeccc-----cCCc------cEEEEccccccCCCCcChHHHHHH---------hcccCCceEEEccCC--------
Q 010534 146 AVTVEMADV-----VSDY------DCAVIDEIQMLGCKTRGFSFTRAL---------LGICANELHLCGDPA-------- 197 (508)
Q Consensus 146 v~T~e~~~~-----l~~~------~~iViDEah~~~~~~rg~~~~~~l---------l~l~~~~~~~~~~~~-------- 197 (508)
++|...+.. ...+ .+||+||||+.... .|...+ +|++++........+
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~f 418 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVF 418 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCC
Confidence 999866542 1111 28999999997532 222222 333333321100000
Q ss_pred --c---chHHHHHHhHcCCcEEEEeeeecCCCCCCC---------------C----------------------------
Q 010534 198 --A---VPLIQQILQVTGDDVKVQSYERLSPLVPLN---------------V---------------------------- 229 (508)
Q Consensus 198 --~---~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~---------------~---------------------------- 229 (508)
. ..+-+.+. -|-.+++....+........ .
T Consensus 419 g~~i~~Y~~~~AI~--dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 496 (667)
T TIGR00348 419 GRYLHRYFITDAIR--DGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLE 496 (667)
T ss_pred CCeEEEeeHHHHhh--cCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHH
Confidence 0 00000000 11112221111111110000 0
Q ss_pred -----cccccc---ccCCCCEEEEe-eHHHHHHHHHHHHhcCC----CeEEEEcCCCCHH--------------------
Q 010534 230 -----PLGSFS---NIQTGDCIVTF-SRHAIYRLKKAIESRGK----HLCSIVYGSLPPE-------------------- 276 (508)
Q Consensus 230 -----~l~~l~---~~~~~~~iv~~-s~~~~~~l~~~L~~~~~----~~v~~lhg~l~~~-------------------- 276 (508)
.+..+. ....++.+||+ ++..|..+++.|.+... ....+++++.+.+
T Consensus 497 ~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (667)
T TIGR00348 497 SIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGF 576 (667)
T ss_pred HHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhh
Confidence 000000 01124555554 89999999999876532 1345555554332
Q ss_pred -HHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCC-CCCCCCcEEEE
Q 010534 277 -TRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR-YGSKFPVGEVT 353 (508)
Q Consensus 277 -~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR-~g~~~~~G~~~ 353 (508)
......++|+++ +..+|||.++++.+|+|.| +.+++. +- |+....++|.+||+.| ..+++..|.++
T Consensus 577 ~~~~~~~~~Fk~~-~~~~ilIVvdmllTGFDaP~l~tLyl-dK---------plk~h~LlQai~R~nR~~~~~K~~g~Iv 645 (667)
T TIGR00348 577 EIYYKDLERFKKE-ENPKLLIVVDMLLTGFDAPILNTLYL-DK---------PLKYHGLLQAIARTNRIDGKDKTFGLIV 645 (667)
T ss_pred hHHHHHHHHhcCC-CCceEEEEEcccccccCCCccceEEE-ec---------cccccHHHHHHHHhccccCCCCCCEEEE
Confidence 123678889763 6789999999999999999 555544 33 4455578999999999 46556778888
Q ss_pred EecC
Q 010534 354 CLDS 357 (508)
Q Consensus 354 ~~~~ 357 (508)
.+..
T Consensus 646 Dy~g 649 (667)
T TIGR00348 646 DYRG 649 (667)
T ss_pred ECcC
Confidence 7765
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.61 E-value=1.2e-14 Score=153.51 Aligned_cols=247 Identities=19% Similarity=0.217 Sum_probs=161.6
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH---HHH-HcCCCEEEEcchHHHHHHHHHHHHhCC-----Ccee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYCGPLRLLAWEVAKRLNKAN-----VSCD 129 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~---~~l-~~~~~~i~l~P~r~La~q~~~~l~~~g-----~~~~ 129 (508)
..|...|. |.-.+ ..|+..-++||||.|||+-.+ .++ .+++++.|++||+.|+.|+++++.+++ ..+.
T Consensus 81 ~~~ws~QR~WakR~--~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~ 158 (1187)
T COG1110 81 FRPWSAQRVWAKRL--VRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVL 158 (1187)
T ss_pred CCchHHHHHHHHHH--HcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCccee
Confidence 38889999 77766 569999999999999999832 122 345788999999999999999999653 3332
Q ss_pred e-eccccc----------cccCCCcEEEEcceecc----cc--CCccEEEEccccccCCCCcChHHHHHHhcccCC----
Q 010534 130 L-ITGQER----------EEVDGAKHRAVTVEMAD----VV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN---- 188 (508)
Q Consensus 130 ~-~~g~~~----------~~~~~~~~iv~T~e~~~----~l--~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~---- 188 (508)
+ +||... ....+-.++++|...+. .+ .++++|++|.+|.+.-..+.-.-.-.++|++..
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 3 444311 12235667777775542 33 479999999999886433322222223332221
Q ss_pred --------------------------------------ceEEEccCCcc------hHHHHHHhHc-CC-----cEEEEee
Q 010534 189 --------------------------------------ELHLCGDPAAV------PLIQQILQVT-GD-----DVKVQSY 218 (508)
Q Consensus 189 --------------------------------------~~~~~~~~~~~------~~~~~l~~~~-~~-----~~~v~~~ 218 (508)
.+.++.+++.. .+.+.++... |. .-.+..|
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y 318 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIY 318 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeee
Confidence 11222222111 2333333221 11 0011111
Q ss_pred eecCCCCCCCCccccccccCCCCEEEEee---HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEE
Q 010534 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFS---RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (508)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~s---~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~il 295 (508)
... ......+..+.....|.+|++-. ++.++++++.|++.|. ++..+|+.- .+.++.|.. |+.++|
T Consensus 319 ~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi-~a~~~~a~~-----~~~le~F~~--GeidvL 387 (1187)
T COG1110 319 VES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGI-NAELIHAEK-----EEALEDFEE--GEVDVL 387 (1187)
T ss_pred ccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCc-eEEEeeccc-----hhhhhhhcc--CceeEE
Confidence 111 22223334556667888887765 8999999999999988 888888742 478999999 999999
Q ss_pred Eecc----ccccccccc--ccEEEEccccc
Q 010534 296 VASD----AIGMGLNLN--ISRIIFSTMKK 319 (508)
Q Consensus 296 VaT~----~~~~Gidip--v~~VI~~~~~~ 319 (508)
|+.. ++-+|+|+| ++++|++|.|+
T Consensus 388 VGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 388 VGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred EEecccccceeecCCchhheeEEEEecCCc
Confidence 9875 899999998 99999999996
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.58 E-value=2.6e-14 Score=148.96 Aligned_cols=275 Identities=15% Similarity=0.117 Sum_probs=163.7
Q ss_pred CCCCCCccc-cchHH---HhcCCceEEEEccCCCchHHHHHHHH---HcC---CCEEEEcchHHHHHHHHHHHHhC---C
Q 010534 59 FTDLTRPHT-WYPLA---RKKVRKVILHVGPTNSGKTHQALSRL---ESS---SSGIYCGPLRLLAWEVAKRLNKA---N 125 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~---~~~~~~~~iv~~pTGsGKT~~~~~~l---~~~---~~~i~l~P~r~La~q~~~~l~~~---g 125 (508)
-..++.+|. ++..+ ....++.++++..||+|||..|++.+ .+. +++++++-+++|+.|.+..+..+ +
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 345777887 66443 22345669999999999999986544 333 58899999999999999887754 5
Q ss_pred CceeeeccccccccCCCcEEEEcceeccc-------------cCCccEEEEccccccCCCCcChH---HHHHHhcccCCc
Q 010534 126 VSCDLITGQEREEVDGAKHRAVTVEMADV-------------VSDYDCAVIDEIQMLGCKTRGFS---FTRALLGICANE 189 (508)
Q Consensus 126 ~~~~~~~g~~~~~~~~~~~iv~T~e~~~~-------------l~~~~~iViDEah~~~~~~rg~~---~~~~ll~l~~~~ 189 (508)
-.+..+.+..... ...+.++|+..+.. -..+|+|||||||+-....+... +..+..+++++.
T Consensus 243 ~~~n~i~~~~~~~--s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP 320 (875)
T COG4096 243 TKMNKIEDKKGDT--SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATP 320 (875)
T ss_pred cceeeeecccCCc--ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCc
Confidence 5666655543322 45777888743311 15599999999998653322222 233344555432
Q ss_pred e--------EEE-ccCCcc-hHHHHHHhHcCCcE---EEEee-----eecCCC---------------------------
Q 010534 190 L--------HLC-GDPAAV-PLIQQILQVTGDDV---KVQSY-----ERLSPL--------------------------- 224 (508)
Q Consensus 190 ~--------~~~-~~~~~~-~~~~~l~~~~~~~~---~v~~~-----~~~~~~--------------------------- 224 (508)
- .+. |.+... .+-..+.......+ .+... .++...
T Consensus 321 ~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~ 400 (875)
T COG4096 321 KETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTL 400 (875)
T ss_pred ccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhc
Confidence 1 222 222111 11111111111111 11100 000011
Q ss_pred --CCCCCcc-c----ccccc----CCCCEEEEe-eHHHHHHHHHHHHhcC----CCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010534 225 --VPLNVPL-G----SFSNI----QTGDCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDA 288 (508)
Q Consensus 225 --~~~~~~l-~----~l~~~----~~~~~iv~~-s~~~~~~l~~~L~~~~----~~~v~~lhg~l~~~~R~~~~~~f~~~ 288 (508)
......+ . .+... ..++.|||+ +..+|+.+...+.+.. +.-+..+.|+-.... ..+..|...
T Consensus 401 v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~k 478 (875)
T COG4096 401 VIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDK 478 (875)
T ss_pred cccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhc
Confidence 0000000 0 01110 123345555 8999999999997753 234777887755442 455556553
Q ss_pred CCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 289 ~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+.-.+|.|+.+++.+|||+| |.++|+....+ |..-|+|++||+-|..+.
T Consensus 479 e~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr---------SktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 479 EKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR---------SKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred CCCCceEEehhhhhcCCCchheeeeeehhhhh---------hHHHHHHHhcCccccCcc
Confidence 35568999999999999997 99988876643 999999999999997654
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.57 E-value=3.3e-13 Score=138.64 Aligned_cols=285 Identities=20% Similarity=0.183 Sum_probs=175.7
Q ss_pred CCCCccc-cchHHHh--cCCceEEEEccCCCchHHHHHHH---HHc----CCCEEEEcchHHHHHHHHHHHHhC--CCce
Q 010534 61 DLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSR---LES----SSSGIYCGPLRLLAWEVAKRLNKA--NVSC 128 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~--~~~~~~iv~~pTGsGKT~~~~~~---l~~----~~~~i~l~P~r~La~q~~~~l~~~--g~~~ 128 (508)
.++++|- -...+.. .++-+.|+.-+.|-|||++.+.. |.. .|.-+|++|...|.+.+ +.++++ ++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~-~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWM-NEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHH-HHHHHhCCCcce
Confidence 5788886 3332222 36778999999999999995433 322 35669999998886554 455554 7888
Q ss_pred eeecccccc---------ccCCCcEEEEcceecc----cc--CCccEEEEccccccCCCCcChHHHHHHhcccC-CceEE
Q 010534 129 DLITGQERE---------EVDGAKHRAVTVEMAD----VV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHL 192 (508)
Q Consensus 129 ~~~~g~~~~---------~~~~~~~iv~T~e~~~----~l--~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~-~~~~~ 192 (508)
..++|+... ....-+++++|+||.- .+ -.+.++||||||++... ...+...+-.+.. ..+.+
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~~nrLLl 323 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKTDNRLLL 323 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcccceeEe
Confidence 889996421 1124566777778863 23 56899999999999754 2222222222111 11122
Q ss_pred EccCCcc-------------------------------------------------------------------------
Q 010534 193 CGDPAAV------------------------------------------------------------------------- 199 (508)
Q Consensus 193 ~~~~~~~------------------------------------------------------------------------- 199 (508)
+|++-..
T Consensus 324 TGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvg 403 (971)
T KOG0385|consen 324 TGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVG 403 (971)
T ss_pred eCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEecc
Confidence 2211100
Q ss_pred --------------------------------hHHHHHHhHcCCcEEEEeeeecCCCCCCCCcc------ccc----cc-
Q 010534 200 --------------------------------PLIQQILQVTGDDVKVQSYERLSPLVPLNVPL------GSF----SN- 236 (508)
Q Consensus 200 --------------------------------~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~l------~~l----~~- 236 (508)
.++.++-+-++.++-+.....-.|.......+ ..+ ..
T Consensus 404 ms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~L 483 (971)
T KOG0385|consen 404 MSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKL 483 (971)
T ss_pred chHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHH
Confidence 01111111122222111111101111111111 001 11
Q ss_pred cCCCCEEEEee--HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCC-CCeeEEEecccccccccc-cccEE
Q 010534 237 IQTGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVLVASDAIGMGLNL-NISRI 312 (508)
Q Consensus 237 ~~~~~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~-g~~~ilVaT~~~~~Gidi-pv~~V 312 (508)
...|..|+.|| .+...-+.+++.-.+. ..+-+.|+++.++|..+++.|+.++ .+.-.|++|-+.|-|||+ .++.|
T Consensus 484 k~~GhRVLIFSQmt~mLDILeDyc~~R~y-~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtV 562 (971)
T KOG0385|consen 484 KEQGHRVLIFSQMTRMLDILEDYCMLRGY-EYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTV 562 (971)
T ss_pred HhCCCeEEEeHHHHHHHHHHHHHHHhcCc-eeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEE
Confidence 14566777776 3444455555544555 8899999999999999999999943 456789999999999999 69999
Q ss_pred EEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 313 I~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|++|. .+++..=+|-.-||.|.|+. ..-.||++..++
T Consensus 563 IlyDS---------DWNPQ~DLQAmDRaHRIGQ~-K~V~V~RLiten 599 (971)
T KOG0385|consen 563 ILYDS---------DWNPQVDLQAMDRAHRIGQK-KPVVVYRLITEN 599 (971)
T ss_pred EEecC---------CCCchhhhHHHHHHHhhCCc-CceEEEEEeccc
Confidence 99988 56788888888888888875 557788888876
No 121
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.56 E-value=8.1e-15 Score=131.58 Aligned_cols=135 Identities=24% Similarity=0.145 Sum_probs=93.1
Q ss_pred CCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCC--CEEEEcchHHHHHHHHHHHHhC----CCceeee
Q 010534 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSS--SGIYCGPLRLLAWEVAKRLNKA----NVSCDLI 131 (508)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~--~~i~l~P~r~La~q~~~~l~~~----g~~~~~~ 131 (508)
|+.|. +++.+. +++++++.||||+|||++++.++ .+++ +++|++|+++|+.|+++++.++ +.++..+
T Consensus 1 t~~Q~~~~~~i~--~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAII--SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHH--TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred CHHHHHHHHHHH--cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccc
Confidence 46777 888885 68999999999999999975443 3333 7899999999999999999864 3567777
Q ss_pred ccccccc-------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCC-ceEEEcc
Q 010534 132 TGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGD 195 (508)
Q Consensus 132 ~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~-~~~~~~~ 195 (508)
+|+.... ..+..++++|++.+. .+.++++||+||+|.+.+...+..+..++-.+... ..+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~ 158 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILL 158 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEE
Confidence 7755321 236889999996542 23459999999999998643333333433333221 3444444
Q ss_pred CCcc
Q 010534 196 PAAV 199 (508)
Q Consensus 196 ~~~~ 199 (508)
+++.
T Consensus 159 SAT~ 162 (169)
T PF00270_consen 159 SATL 162 (169)
T ss_dssp ESSS
T ss_pred eeCC
Confidence 4443
No 122
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=3.1e-14 Score=139.55 Aligned_cols=284 Identities=19% Similarity=0.186 Sum_probs=178.3
Q ss_pred cCCCCCCccc-cchHHHhcC-CceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhC----CCceee
Q 010534 58 DFTDLTRPHT-WYPLARKKV-RKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDL 130 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~-~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~----g~~~~~ 130 (508)
.-+.++++|+ .+.....+. -+.-+|+.|.|+|||++..-+... .+++++++..-.-+.|+...+..+ .-.+..
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~r 378 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICR 378 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEE
Confidence 4467888998 776664332 367899999999999996554433 467899999999999999888754 345667
Q ss_pred ecccccc-ccCCCcEEEEcceeccc--------------c--CCccEEEEccccccCCCCcChHHHHHH--------hcc
Q 010534 131 ITGQERE-EVDGAKHRAVTVEMADV--------------V--SDYDCAVIDEIQMLGCKTRGFSFTRAL--------LGI 185 (508)
Q Consensus 131 ~~g~~~~-~~~~~~~iv~T~e~~~~--------------l--~~~~~iViDEah~~~~~~rg~~~~~~l--------l~l 185 (508)
.|.+.+. ...++.++|.|+.|+.. + ..++++++||+|.+... .+.+.+ +|+
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~----MFRRVlsiv~aHcKLGL 454 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK----MFRRVLSIVQAHCKLGL 454 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH----HHHHHHHHHHHHhhccc
Confidence 7777665 45577888888877642 2 67999999999998632 233332 667
Q ss_pred cCCceEE----------EccCCcchHHHHHHhHcCCcEEEEeeeecCCCCC-----------CCCc------------cc
Q 010534 186 CANELHL----------CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP-----------LNVP------------LG 232 (508)
Q Consensus 186 ~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~-----------~~~~------------l~ 232 (508)
+++.++- +|..--.....++. .-|.-..|+..+-.+|... .... ..
T Consensus 455 TATLvREDdKI~DLNFLIGPKlYEAnWmdL~-~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCq 533 (776)
T KOG1123|consen 455 TATLVREDDKITDLNFLIGPKLYEANWMDLQ-KKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQ 533 (776)
T ss_pred eeEEeeccccccccceeecchhhhccHHHHH-hCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHH
Confidence 6654321 11111111111111 1122122222211111110 0000 01
Q ss_pred cccc--cCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-c
Q 010534 233 SFSN--IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (508)
Q Consensus 233 ~l~~--~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v 309 (508)
-+.+ ...|+.|++|+. .+..|.++--+.+. -++||..++.+|.++++.|+-. ..++-|+-+.+..+++|+| .
T Consensus 534 fLI~~HE~RgDKiIVFsD-nvfALk~YAikl~K---pfIYG~Tsq~ERm~ILqnFq~n-~~vNTIFlSKVgDtSiDLPEA 608 (776)
T KOG1123|consen 534 FLIKFHERRGDKIIVFSD-NVFALKEYAIKLGK---PFIYGPTSQNERMKILQNFQTN-PKVNTIFLSKVGDTSIDLPEA 608 (776)
T ss_pred HHHHHHHhcCCeEEEEec-cHHHHHHHHHHcCC---ceEECCCchhHHHHHHHhcccC-CccceEEEeeccCccccCCcc
Confidence 1111 146788888862 24455554444433 4679999999999999999973 4678888899999999999 8
Q ss_pred cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCC---cEEEEEecCCC
Q 010534 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP---VGEVTCLDSED 359 (508)
Q Consensus 310 ~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~---~G~~~~~~~~~ 359 (508)
.++|..... --|..+-.||.||.-|...... ....|.+.+.|
T Consensus 609 nvLIQISSH--------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 609 NVLIQISSH--------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred cEEEEEccc--------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 877765442 1277788999999998765312 24556666655
No 123
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.54 E-value=4.7e-14 Score=120.73 Aligned_cols=101 Identities=28% Similarity=0.400 Sum_probs=90.5
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+.++||+ +.+.++.+++.|++... .+..+||++++.+|..+.+.|++ +..+||++|+++++|+|+| +++||+.+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChhhcCcChhhCCEEEEeC
Confidence 55667766 79999999999988554 89999999999999999999999 8899999999999999997 99999998
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEE
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~ 354 (508)
. +.+...+.|++||+||.|.. |.|+.
T Consensus 105 ~---------~~~~~~~~Q~~GR~~R~~~~---~~~~~ 130 (131)
T cd00079 105 L---------PWSPSSYLQRIGRAGRAGQK---GTAIL 130 (131)
T ss_pred C---------CCCHHHheecccccccCCCC---ceEEe
Confidence 8 67999999999999999975 77764
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=1e-13 Score=108.13 Aligned_cols=80 Identities=30% Similarity=0.455 Sum_probs=72.8
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChh
Q 010534 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 331 (508)
Q Consensus 253 ~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~ 331 (508)
.+++.|+..+. .+..+||++++++|..+++.|++ +..+||++|+++++|+|+| ++.||+++. |.+..
T Consensus 2 ~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gi~~~~~~~vi~~~~---------~~~~~ 69 (82)
T smart00490 2 ELAELLKELGI-KVARLHGGLSQEEREEILEKFNN--GKIKVLVATDVAERGLDLPGVDLVIIYDL---------PWSPA 69 (82)
T ss_pred HHHHHHHHCCC-eEEEEECCCCHHHHHHHHHHHHc--CCCeEEEECChhhCCcChhcCCEEEEeCC---------CCCHH
Confidence 45667777655 89999999999999999999999 8889999999999999997 999999988 67999
Q ss_pred hHHhhhccCCCCC
Q 010534 332 EVKQIAGRAGRYG 344 (508)
Q Consensus 332 ~~~Qr~GRagR~g 344 (508)
.+.|++||++|.|
T Consensus 70 ~~~Q~~gR~~R~g 82 (82)
T smart00490 70 SYIQRIGRAGRAG 82 (82)
T ss_pred HHHHhhcccccCC
Confidence 9999999999976
No 125
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.45 E-value=5.3e-13 Score=142.70 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=95.6
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~ 318 (508)
.++||+ |++.++.+++.|.+.+. .+..+||+++..+|.++++.|+. |+.+|+|||+++++|+|+| ++.||+++..
T Consensus 444 ~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 444 RVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred EEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 355555 89999999999998876 89999999999999999999999 9999999999999999997 9999998854
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHh
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~ 365 (508)
+|. .|.+..+|+||+|||||... |.|+.+.+.....+.+
T Consensus 521 ifG----~p~~~~~~iqriGRagR~~~----G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 521 KEG----FLRSERSLIQTIGRAARNVN----GKVIMYADKITDSMQK 559 (655)
T ss_pred ccc----CCCCHHHHHHHhcCCCCCCC----CEEEEEEcCCCHHHHH
Confidence 322 25588999999999999854 8888887655334433
No 126
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.42 E-value=1.4e-12 Score=140.38 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=92.6
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~ 318 (508)
.++||+ |++.++.+++.|.+.+. .+..+||+++..+|..+++.|+. |+..|+|||+++++|+|+| ++.||+++..
T Consensus 448 ~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCCHHHHHHHHHHHHc--CCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 455555 89999999999998876 89999999999999999999999 9999999999999999997 9999998875
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
.|.- |.+..+|+||+||+||.. . |.|+.+...
T Consensus 525 ifG~----~~~~~~yiqr~GR~gR~~-~---G~~i~~~~~ 556 (652)
T PRK05298 525 KEGF----LRSERSLIQTIGRAARNV-N---GKVILYADK 556 (652)
T ss_pred cccc----CCCHHHHHHHhccccCCC-C---CEEEEEecC
Confidence 4331 458899999999999974 3 888877763
No 127
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.42 E-value=2.8e-11 Score=134.88 Aligned_cols=116 Identities=15% Similarity=0.255 Sum_probs=83.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCC-CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---ccEE
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip---v~~V 312 (508)
.+|.++|+| |.+..+.+++.|..... ....++..+.. ..|.++++.|++ ++..||+||+.+.+|||+| ...|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHh--CCCeEEEEcceeecccccCCCceEEE
Confidence 467788877 89999999999875211 12223333333 467889999998 8888999999999999995 5678
Q ss_pred EEcccccccCc-----------------c----cccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 313 I~~~~~~~d~~-----------------~----~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
|..++|.-.+. . .-|.....+.|-+||.=|... ..|.++.+...
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~--D~G~v~ilD~R 814 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREN--DRGSIVILDRR 814 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCC--ceEEEEEEccc
Confidence 88887754332 0 112345678999999999876 45888877665
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.40 E-value=5e-12 Score=136.04 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=96.1
Q ss_pred CCCCEEEEee--HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCC-CCCeeEEEecccccccccc-cccEEE
Q 010534 238 QTGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA-SSEFDVLVASDAIGMGLNL-NISRII 313 (508)
Q Consensus 238 ~~~~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~-~g~~~ilVaT~~~~~Gidi-pv~~VI 313 (508)
..|.-|++|| .+...-|+++|...+. ..--+.|+++.+.|+..++.|+.| +....+|+||-+.|-|||+ -+++||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~y-pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGY-PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCC-cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 3556777786 6778889999988877 788899999999999999999994 4457899999999999999 599999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++|. .+++.+=+|-.-||.|.|+. ..-.||++.+.+
T Consensus 776 IFDS---------DWNPQNDLQAqARaHRIGQk-k~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 776 IFDS---------DWNPQNDLQAQARAHRIGQK-KHVNVYRLVTKN 811 (1373)
T ss_pred EeCC---------CCCcchHHHHHHHHHhhccc-ceEEEEEEecCC
Confidence 9988 67899999999999999985 667789998776
No 129
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.38 E-value=4.9e-11 Score=123.45 Aligned_cols=112 Identities=28% Similarity=0.331 Sum_probs=89.8
Q ss_pred CCCCEEEEe--eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEE
Q 010534 238 QTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 314 (508)
Q Consensus 238 ~~~~~iv~~--s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~ 314 (508)
..|+.++.| ++....-+...|....+...+-+.|..|...|...+++|++.+...-.|++|.+.+-|+|+ .+++||.
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 456666666 5777777777777444448999999999999999999999844555688999999999999 6999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+|+ .++++.=.|-.-||=|.|+. ..-.||++-...
T Consensus 624 fDP---------dWNPStD~QAreRawRiGQk-kdV~VYRL~t~g 658 (923)
T KOG0387|consen 624 FDP---------DWNPSTDNQARERAWRIGQK-KDVVVYRLMTAG 658 (923)
T ss_pred ECC---------CCCCccchHHHHHHHhhcCc-cceEEEEEecCC
Confidence 988 66888888999999999985 445677776543
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=7.8e-11 Score=123.47 Aligned_cols=94 Identities=18% Similarity=0.080 Sum_probs=70.7
Q ss_pred cCCceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHh----CCCceeeeccccccc----cCCC
Q 010534 75 KVRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE----VDGA 142 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~----~~~~ 142 (508)
++|+ +....||+|||+++..+ .+.++.+.++.|+-.||.+-++.+.+ +|+.|+++++..... .-.+
T Consensus 91 l~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~~ 168 (764)
T PRK12326 91 LAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYAC 168 (764)
T ss_pred hCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHcC
Confidence 4554 67999999999996322 24567788999999999999988774 599999998865432 2367
Q ss_pred cEEEEcceecc--c-------------cCCccEEEEccccccC
Q 010534 143 KHRAVTVEMAD--V-------------VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 143 ~~iv~T~e~~~--~-------------l~~~~~iViDEah~~~ 170 (508)
.++++|..-+. . .+.+.+.||||+|.+.
T Consensus 169 DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 169 DVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 88888873221 1 2678999999999875
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.34 E-value=3.4e-11 Score=128.63 Aligned_cols=92 Identities=8% Similarity=-0.087 Sum_probs=69.9
Q ss_pred EEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHh-CC-Cceeeeccccccc----------cCCCcE
Q 010534 81 LHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-AN-VSCDLITGQEREE----------VDGAKH 144 (508)
Q Consensus 81 iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~-~g-~~~~~~~g~~~~~----------~~~~~~ 144 (508)
+..+.+|||||.++++.+ ..++++|+++|...|+.|+.++|++ +| ..+.+++++.... .....+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 344446999999987665 3466889999999999999999985 56 7788888754322 123566
Q ss_pred EEEcc-eeccccCCccEEEEccccccCCC
Q 010534 145 RAVTV-EMADVVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 145 iv~T~-e~~~~l~~~~~iViDEah~~~~~ 172 (508)
++.|- -++..+.++++|||||-|.-+..
T Consensus 244 ViGtRSAvFaP~~~LgLIIvdEEhd~syk 272 (665)
T PRK14873 244 VVGTRSAVFAPVEDLGLVAIWDDGDDLLA 272 (665)
T ss_pred EEEcceeEEeccCCCCEEEEEcCCchhhc
Confidence 77775 56677899999999999987543
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=99.34 E-value=7.8e-12 Score=129.96 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=65.6
Q ss_pred eEEE--EcCCCCHHHHHHHHHHhcC-CCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccC
Q 010534 265 LCSI--VYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340 (508)
Q Consensus 265 ~v~~--lhg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRa 340 (508)
.+.+ +.|.|...+|...++.-.. ++.+++||-.--.+.+|||+| .+.||+++..+ +..+.+|-+||+
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~---------smVDIVQaVGRV 569 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS---------SMVDIVQAVGRV 569 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch---------hHHHHHHHHHHH
Confidence 4444 4588999999554443322 458899999999999999998 99999998855 999999999999
Q ss_pred CCCCCCCCcEEEEE
Q 010534 341 GRYGSKFPVGEVTC 354 (508)
Q Consensus 341 gR~g~~~~~G~~~~ 354 (508)
.|..+++..|+++.
T Consensus 570 MRKa~gK~yGYIIL 583 (1518)
T COG4889 570 MRKAKGKKYGYIIL 583 (1518)
T ss_pred HHhCcCCccceEEE
Confidence 99998878888753
No 133
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.29 E-value=3.1e-12 Score=127.31 Aligned_cols=273 Identities=11% Similarity=0.072 Sum_probs=158.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----H--HHHHcCCCEEEEcchHHHHHHHHHHHH-------hC-
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----L--SRLESSSSGIYCGPLRLLAWEVAKRLN-------KA- 124 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~--~~l~~~~~~i~l~P~r~La~q~~~~l~-------~~- 124 (508)
...-..|. ++..+ .+++++++.-.|.+||++++ . +.+......+++.|+.+++....+.+. ++
T Consensus 285 E~~~~~~~~~~~~~--~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 285 ESGIAISLELLKFA--SEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred cchhhhhHHHHhhh--hhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 33445555 66655 57999999999999999994 2 222334466899999999987654332 11
Q ss_pred CCceeeeccccccc-----cCCCcEEEEcceecc------------ccCCccEEEEccccccCCCCcChHH---HHHHhc
Q 010534 125 NVSCDLITGQEREE-----VDGAKHRAVTVEMAD------------VVSDYDCAVIDEIQMLGCKTRGFSF---TRALLG 184 (508)
Q Consensus 125 g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~------------~l~~~~~iViDEah~~~~~~rg~~~---~~~ll~ 184 (508)
...|....|..... ..+.+.++..+.+.. .+-...++++||+|...-. .|... .++|+.
T Consensus 363 ~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~ 441 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSD 441 (1034)
T ss_pred cceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHH
Confidence 11112222221110 124555666554321 1245678899999998643 12111 223332
Q ss_pred ccC-----CceEEEccCCcchHHHHHH-hHcCC-cEEEEee------------eec-CCCCCC---CCcc----ccccc-
Q 010534 185 ICA-----NELHLCGDPAAVPLIQQIL-QVTGD-DVKVQSY------------ERL-SPLVPL---NVPL----GSFSN- 236 (508)
Q Consensus 185 l~~-----~~~~~~~~~~~~~~~~~l~-~~~~~-~~~v~~~------------~~~-~~~~~~---~~~l----~~l~~- 236 (508)
+.. ....+...+++.....++. ...+- +++.... +.+ .+.... ...+ ..+.+
T Consensus 442 L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~ 521 (1034)
T KOG4150|consen 442 LIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEM 521 (1034)
T ss_pred HHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 221 1223333333332222222 22211 1111111 111 111111 0111 00111
Q ss_pred c-CCCCEEEEe-eHHHHHHHHHHHHhc----CC---CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc
Q 010534 237 I-QTGDCIVTF-SRHAIYRLKKAIESR----GK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (508)
Q Consensus 237 ~-~~~~~iv~~-s~~~~~~l~~~L~~~----~~---~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi 307 (508)
+ ..-.+|-|+ +|+.|+-+-...++. +. ..+..+.|+.+.++|++++...-. |+..-++||++++-||||
T Consensus 522 i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~L~giIaTNALELGIDI 599 (1034)
T KOG4150|consen 522 VQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GKLCGIIATNALELGIDI 599 (1034)
T ss_pred HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--CeeeEEEecchhhhcccc
Confidence 1 223344444 888888766655443 11 136678899999999999988877 999999999999999999
Q ss_pred -cccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 308 -NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 308 -pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
..+.|++.+. |.|.++++|..|||||....
T Consensus 600 G~LDAVl~~GF---------P~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 600 GHLDAVLHLGF---------PGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ccceeEEEccC---------chhHHHHHHHhccccccCCC
Confidence 4999999999 77999999999999999875
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.29 E-value=2.2e-11 Score=111.63 Aligned_cols=150 Identities=22% Similarity=0.154 Sum_probs=96.7
Q ss_pred ccCCCCCCccc-cchHHHhcCC-ceEEEEccCCCchHHHHHHHHH----cC--CCEEEEcchHHHHHHHHHHHHhCC---
Q 010534 57 FDFTDLTRPHT-WYPLARKKVR-KVILHVGPTNSGKTHQALSRLE----SS--SSGIYCGPLRLLAWEVAKRLNKAN--- 125 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~-~~~iv~~pTGsGKT~~~~~~l~----~~--~~~i~l~P~r~La~q~~~~l~~~g--- 125 (508)
+++..+++.|. ++..+. +. +++++.+|||||||+++...+. .. ++++|++|++.++.|+.+++....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~--~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEALL--SGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred cCCCCCCHHHHHHHHHHH--cCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 36788999999 888773 45 8999999999999997644443 23 578999999999999999998654
Q ss_pred --Cceeeecccccc-----ccCCC-cEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCc
Q 010534 126 --VSCDLITGQERE-----EVDGA-KHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189 (508)
Q Consensus 126 --~~~~~~~g~~~~-----~~~~~-~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~ 189 (508)
.....+.+.... ...+. .++++|++.+. ...+++++|+||+|++....+...+...+-.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 333344443310 11233 88889975442 235688999999999985333444444444342333
Q ss_pred eEEEccCCcchHHHHHHhH
Q 010534 190 LHLCGDPAAVPLIQQILQV 208 (508)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~ 208 (508)
..+..++++..........
T Consensus 162 ~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 162 QLLLLSATPPEEIENLLEL 180 (201)
T ss_pred eEEEEecCCchhHHHHHHH
Confidence 3333343443444444433
No 135
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.29 E-value=1e-10 Score=115.15 Aligned_cols=130 Identities=21% Similarity=0.225 Sum_probs=94.4
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEccc
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTM 317 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~ 317 (508)
.+.+||. -....+.+...+.+.+. ...-+.|+.++.+|....+.|...+...--+++-.++++|+++ -.+.||+..+
T Consensus 493 ~KflVFaHH~~vLd~Iq~~~~~r~v-g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL 571 (689)
T KOG1000|consen 493 RKFLVFAHHQIVLDTIQVEVNKRKV-GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAEL 571 (689)
T ss_pred ceEEEEehhHHHHHHHHHHHHHcCC-CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEe
Confidence 3445555 46666777777777665 6778899999999999999999843444456677899999999 4999999988
Q ss_pred ccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-HHHHhhhcCCCchhhhcCC
Q 010534 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKSLLEPSPMLESAGL 379 (508)
Q Consensus 318 ~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l 379 (508)
++++.-++|---|+.|.|+..+.++.|....... +.+..+++....-+....+
T Consensus 572 ---------~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl 625 (689)
T KOG1000|consen 572 ---------HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGL 625 (689)
T ss_pred ---------cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhccc
Confidence 5689999999999999999756666666655544 3444455555444444443
No 136
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.29 E-value=1e-10 Score=123.88 Aligned_cols=103 Identities=26% Similarity=0.214 Sum_probs=82.7
Q ss_pred eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCC-eeEEEecccccccccc-cccEEEEcccccccCcc
Q 010534 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVE 324 (508)
Q Consensus 247 s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~-~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~ 324 (508)
......++.+.+.+..+..++.+||+++..+|..+++.|++|++. .-.|.+|.+.+.|||+ ...+||.+|.
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~------- 675 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP------- 675 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC-------
Confidence 344555555555444455999999999999999999999997666 4566677899999999 8999999998
Q ss_pred cccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 325 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 325 ~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.++++.=.|-++||=|.|++ ...++|++-...
T Consensus 676 --dWNPa~d~QAmaR~~RdGQK-k~v~iYrLlatG 707 (776)
T KOG0390|consen 676 --DWNPAVDQQAMARAWRDGQK-KPVYIYRLLATG 707 (776)
T ss_pred --CCCchhHHHHHHHhccCCCc-ceEEEEEeecCC
Confidence 77999999999999999986 446667765543
No 137
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=2.8e-10 Score=122.26 Aligned_cols=93 Identities=20% Similarity=0.066 Sum_probs=70.7
Q ss_pred ceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHh----CCCceeeeccccccc----cCCCcEE
Q 010534 78 KVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE----VDGAKHR 145 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~----~~~~~~i 145 (508)
+--|....||+|||+++..+ .+.+..+.++.|+-.||.+-++.+.+ +|+.|++++|..... .-...++
T Consensus 96 ~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~ 175 (913)
T PRK13103 96 EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADIT 175 (913)
T ss_pred cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEE
Confidence 33478999999999996432 24566788899999999999988874 599999998865332 2357888
Q ss_pred EEcceec--c----c---------cCCccEEEEccccccC
Q 010534 146 AVTVEMA--D----V---------VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 146 v~T~e~~--~----~---------l~~~~~iViDEah~~~ 170 (508)
++|...+ + . ...+.++||||+|.++
T Consensus 176 YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 176 YGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9997432 1 1 2779999999999875
No 138
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.25 E-value=1.8e-09 Score=112.06 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=83.9
Q ss_pred CCCCEEEEee--HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEE
Q 010534 238 QTGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 314 (508)
Q Consensus 238 ~~~~~iv~~s--~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~ 314 (508)
..|+.|+.|| -....-+...|.-.+. +..-+.|+.+-.+|..++..|.....-.-+|++|-+.|-|||+ -++.||.
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~-~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGY-KYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCc-eEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 4567777776 2334445555555555 8889999999999999999999855556789999999999999 5999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+|.. .++-.=.|-.-||.|.|+. ..-.||++..++
T Consensus 854 hD~d---------FNP~dD~QAEDRcHRvGQt-kpVtV~rLItk~ 888 (941)
T KOG0389|consen 854 HDID---------FNPYDDKQAEDRCHRVGQT-KPVTVYRLITKS 888 (941)
T ss_pred eecC---------CCCcccchhHHHHHhhCCc-ceeEEEEEEecC
Confidence 9883 2455556777777777775 336678887766
No 139
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.24 E-value=3.2e-11 Score=103.93 Aligned_cols=95 Identities=24% Similarity=0.234 Sum_probs=73.0
Q ss_pred ceEEEEccCCCchHHHHHHHHH------cCCCEEEEcchHHHHHHHHHHHHhCC---Cceeeeccccccc------cCCC
Q 010534 78 KVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKAN---VSCDLITGQEREE------VDGA 142 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~------~~~~~i~l~P~r~La~q~~~~l~~~g---~~~~~~~g~~~~~------~~~~ 142 (508)
+++++.+|||+|||++++..+. ..++++|++|++.++.|+.+.+.... ..+....+..... ..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 4689999999999999754442 33688999999999999999887543 6677777654433 3577
Q ss_pred cEEEEcceecc--------ccCCccEEEEccccccCCC
Q 010534 143 KHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 143 ~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (508)
.++++|++.+. ....++++|+||+|.+...
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 88999986542 1357999999999999765
No 140
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.21 E-value=5.4e-10 Score=118.16 Aligned_cols=257 Identities=16% Similarity=0.196 Sum_probs=144.5
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcC-----CCEEEEcchHHHHHHHHHHHHhCCCceeeeccccc---cccCCCcEEE
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESS-----SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER---EEVDGAKHRA 146 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~-----~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~---~~~~~~~~iv 146 (508)
..+...+|.+|.|||||++...++.+. .+++++..+++|+.+++++++..|+.--..+.+.. ........++
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLi 126 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLI 126 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEE
Confidence 357889999999999999988888653 68899999999999999999976653211111111 1111234455
Q ss_pred Ecceecc-----ccCCccEEEEccccccCCCCcChH------HHHHHhcccC-CceEEEccCCcchHHHHHHhHc--CCc
Q 010534 147 VTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFS------FTRALLGICA-NELHLCGDPAAVPLIQQILQVT--GDD 212 (508)
Q Consensus 147 ~T~e~~~-----~l~~~~~iViDEah~~~~~~rg~~------~~~~ll~l~~-~~~~~~~~~~~~~~~~~l~~~~--~~~ 212 (508)
+..+.+. .+.++|+|||||+-.....-.... .-..+..+.. ....++.++...+..-+++..+ +++
T Consensus 127 vqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~ 206 (824)
T PF02399_consen 127 VQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDEN 206 (824)
T ss_pred EEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCc
Confidence 5554442 246799999999976542100000 0112222222 2223333333333333344333 222
Q ss_pred EEE--Eeeee----------------------cCCCCCC--C-------------Cc--------c-ccccccCCCCEEE
Q 010534 213 VKV--QSYER----------------------LSPLVPL--N-------------VP--------L-GSFSNIQTGDCIV 244 (508)
Q Consensus 213 ~~v--~~~~~----------------------~~~~~~~--~-------------~~--------l-~~l~~~~~~~~iv 244 (508)
+.+ ..|.. ..+-+.. . .. . ..+.++..|..|.
T Consensus 207 i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIc 286 (824)
T PF02399_consen 207 IHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNIC 286 (824)
T ss_pred EEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEE
Confidence 222 22200 0000000 0 00 0 0011224455444
Q ss_pred Ee--eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---ccEEEEccccc
Q 010534 245 TF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRIIFSTMKK 319 (508)
Q Consensus 245 ~~--s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip---v~~VI~~~~~~ 319 (508)
+| |...++.+++......+ +|..++|.-+.. .+ +.+ ++.+|++=|+++..|+++. .+.|.-+-.+.
T Consensus 287 vfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~---dv-~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~ 357 (824)
T PF02399_consen 287 VFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLE---DV-ESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM 357 (824)
T ss_pred EEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCcc---cc-ccc----cceeEEEEeceEEEEeccchhhceEEEEEecCC
Confidence 44 57777778887777755 899998876665 23 233 5689999999999999994 44444221110
Q ss_pred ccCcccccCChhhHHhhhccCCCCCC
Q 010534 320 FDGVELRDLTVPEVKQIAGRAGRYGS 345 (508)
Q Consensus 320 ~d~~~~~p~s~~~~~Qr~GRagR~g~ 345 (508)
.. --+..+..|++||+-....
T Consensus 358 ----~~-gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 358 ----SY-GPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred ----CC-CCcHHHHHHHHHHHHhhcc
Confidence 00 1256679999999976665
No 141
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=3.5e-10 Score=121.99 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEE----
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI---- 312 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~V---- 312 (508)
...++|++ |+..++.+++.|...+. ...++|+ .+.+|...+..|.. +...|+||||+++||+||+ ...|
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~gI-~h~vLna--kq~~REa~Iia~AG--~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAKRI-AHNVLNA--KQHDREAEIVAEAG--QKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCC-CceeecC--CHHHhHHHHHHhcC--CCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 44566666 89999999999999887 7889997 57788899999998 7778999999999999996 3333
Q ss_pred ----EEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 313 ----IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 313 ----I~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|.+.. |-|...+.||.|||||.|.. |....+.+.+
T Consensus 673 GL~VIgter---------hes~Rid~Ql~GRtGRqGdp---GsS~ffvSle 711 (1025)
T PRK12900 673 GLFILGSER---------HESRRIDRQLRGRAGRQGDP---GESVFYVSLE 711 (1025)
T ss_pred CceeeCCCC---------CchHHHHHHHhhhhhcCCCC---cceEEEechh
Confidence 55444 66889999999999999988 7776665543
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.15 E-value=8.8e-10 Score=118.78 Aligned_cols=109 Identities=26% Similarity=0.355 Sum_probs=82.5
Q ss_pred CCEEEEee-HHHHHHHHHHHHhcCCCeEE--EEcCCCCHHHHHHHHHHhcCCCCCeeEE-Eecccccccccc-cccEEEE
Q 010534 240 GDCIVTFS-RHAIYRLKKAIESRGKHLCS--IVYGSLPPETRTRQATRFNDASSEFDVL-VASDAIGMGLNL-NISRIIF 314 (508)
Q Consensus 240 ~~~iv~~s-~~~~~~l~~~L~~~~~~~v~--~lhg~l~~~~R~~~~~~f~~~~g~~~il-VaT~~~~~Gidi-pv~~VI~ 314 (508)
..++|||. +..+.-+.+.|-+..-..|. .+.|+.++.+|.++.++|++.+ .++|| ++|-+.|-|+|+ ++++||+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp-tIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP-TIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC-ceeEEEEeeeccccccccCCCceEEE
Confidence 34677774 66666666666554333444 7899999999999999999932 45654 566799999999 7999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++- .+++..=+|-+-||.|.|++ ..-.||++....
T Consensus 1420 vEH---------DWNPMrDLQAMDRAHRIGQK-rvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1420 VEH---------DWNPMRDLQAMDRAHRIGQK-RVVNVYRLITRG 1454 (1549)
T ss_pred Eec---------CCCchhhHHHHHHHHhhcCc-eeeeeeeehhcc
Confidence 877 55677779999999999985 455567776654
No 143
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.14 E-value=1.3e-09 Score=118.17 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=71.2
Q ss_pred EEEeeHHHHHHHHHHHHhcC-----CCeEEEEcCCCCHHHHHHHHHHhc----------------------C--CCCCee
Q 010534 243 IVTFSRHAIYRLKKAIESRG-----KHLCSIVYGSLPPETRTRQATRFN----------------------D--ASSEFD 293 (508)
Q Consensus 243 iv~~s~~~~~~l~~~L~~~~-----~~~v~~lhg~l~~~~R~~~~~~f~----------------------~--~~g~~~ 293 (508)
|.+.+.+.+..+++.|.... ...++++||..+...|..+++... + ..+...
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 33446777777777776542 235889999999998877775531 1 124678
Q ss_pred EEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 294 ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
|+|||+++|.|+|++.+.+|-. +.+..+++||+||+.|.|..
T Consensus 841 i~v~Tqv~E~g~D~dfd~~~~~-----------~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 841 IVLATPVEEVGRDHDYDWAIAD-----------PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEEEeeeEEEEecccCCeeeec-----------cCcHHHHHHHhhcccccccC
Confidence 9999999999999999988754 45899999999999999874
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.10 E-value=2.5e-09 Score=117.91 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=80.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCC-CCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---ccEE
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGS-LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~-l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip---v~~V 312 (508)
.+|.++|+| |.+..+.+++.|..... .+ ...|. .+ |.++.++|++ ++..||++|+.+-+|||+| ...|
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~-~~-l~Qg~~~~---~~~l~~~F~~--~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQV-SH-LAQEKNGT---AYNIKKRFDR--GEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCC-cE-EEeCCCcc---HHHHHHHHHc--CCCeEEEecchhhCCCCCCCCCeEEE
Confidence 467777777 78989999998876532 34 44442 33 3468999998 7678999999999999994 5567
Q ss_pred EEcccccccCc-----------------c----cccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 313 I~~~~~~~d~~-----------------~----~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|...+|.-.|+ . .-|.....+.|-+||.=|... ..|.++.+...-
T Consensus 719 iI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~--D~Gvv~ilD~R~ 784 (820)
T PRK07246 719 VITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRED--QKSAVLILDRRI 784 (820)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCC--CcEEEEEECCcc
Confidence 77776643221 0 113345678999999999875 458888887663
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=9.6e-09 Score=109.58 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=64.9
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC-CeeEEEeccccccccccccc--------
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNLNIS-------- 310 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g-~~~ilVaT~~~~~Gidipv~-------- 310 (508)
.++|.+ |....+.+++.|.+.+. ...++++.-...+ ..++. +. | .-.|.|||+++|||-||-..
T Consensus 428 PVLVgT~SIe~SE~ls~~L~~~gi-~h~vLNAk~~e~E-A~IIa--~A--G~~GaVTIATNMAGRGTDI~Lg~~V~~~GG 501 (925)
T PRK12903 428 PILIGTAQVEDSETLHELLLEANI-PHTVLNAKQNARE-AEIIA--KA--GQKGAITIATNMAGRGTDIKLSKEVLELGG 501 (925)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-CceeecccchhhH-HHHHH--hC--CCCCeEEEecccccCCcCccCchhHHHcCC
Confidence 344444 79999999999998877 6677777633221 22222 22 3 23699999999999999533
Q ss_pred -EEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 311 -~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+||-... +-|..-=.|..|||||-|..
T Consensus 502 LhVIgTer---------heSrRIDnQLrGRaGRQGDp 529 (925)
T PRK12903 502 LYVLGTDK---------AESRRIDNQLRGRSGRQGDV 529 (925)
T ss_pred cEEEeccc---------CchHHHHHHHhcccccCCCC
Confidence 6776544 45777778999999999987
No 146
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.02 E-value=2.9e-10 Score=103.18 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=70.7
Q ss_pred CCCccc-cchHHHhc-----CCceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeecc-
Q 010534 62 LTRPHT-WYPLARKK-----VRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG- 133 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~-----~~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g- 133 (508)
|++.|. ++..+... +++.+++.+|||||||.+++..+.+ ..++++++|+..|+.|+.+.+..++.......+
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~ 83 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFEK 83 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 566676 66555432 3689999999999999997654322 128899999999999999999543222111100
Q ss_pred --------------------ccccccCCCcEEEEcceecc-------------------ccCCccEEEEccccccCC
Q 010534 134 --------------------QEREEVDGAKHRAVTVEMAD-------------------VVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 134 --------------------~~~~~~~~~~~iv~T~e~~~-------------------~l~~~~~iViDEah~~~~ 171 (508)
..........++++|...+. ....+++||+||||+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 84 SIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp -GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 00111235567777763321 125789999999999864
No 147
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.97 E-value=5.6e-08 Score=104.33 Aligned_cols=94 Identities=18% Similarity=0.057 Sum_probs=68.6
Q ss_pred CceEEEEccCCCchHHHHHH-HH---HcCCCEEEEcchHHHHHHHHHHHH----hCCCceeeeccccccc----cCCCcE
Q 010534 77 RKVILHVGPTNSGKTHQALS-RL---ESSSSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQEREE----VDGAKH 144 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~-~l---~~~~~~i~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~~----~~~~~~ 144 (508)
++.-|....||.|||+++.. .. +.+..+-++.+...||..-++.+. .+|+.|+++.++.... .-.+.+
T Consensus 89 ~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~~DI 168 (870)
T CHL00122 89 NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLKDI 168 (870)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcCCCC
Confidence 34568999999999999632 22 245567788999999998887776 3699999987754432 236778
Q ss_pred EEEcceec--c-------------ccCCccEEEEccccccC
Q 010534 145 RAVTVEMA--D-------------VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 145 iv~T~e~~--~-------------~l~~~~~iViDEah~~~ 170 (508)
+++|..-+ + ..+.+.+.||||||.+.
T Consensus 169 tYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 169 TYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred EecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 88887322 1 12679999999999875
No 148
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.93 E-value=2.1e-08 Score=99.03 Aligned_cols=86 Identities=23% Similarity=0.223 Sum_probs=71.8
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCCC
Q 010534 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342 (508)
Q Consensus 264 ~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR 342 (508)
..++.+-|+|++..|...++.|++...-.-.||+-.+.+..+|+ -...|.+.|+ |++++--+|-..|..|
T Consensus 663 fscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP---------WWNpaVe~Qa~DRiHR 733 (791)
T KOG1002|consen 663 FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP---------WWNPAVEWQAQDRIHR 733 (791)
T ss_pred ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc---------cccHHHHhhhhhhHHh
Confidence 37999999999999999999999855556678888999999999 5999999988 9999999999999999
Q ss_pred CCCCCCcEEEEEecCCC
Q 010534 343 YGSKFPVGEVTCLDSED 359 (508)
Q Consensus 343 ~g~~~~~G~~~~~~~~~ 359 (508)
.|+- .--.|+++.-++
T Consensus 734 IGQ~-rPvkvvrf~iEn 749 (791)
T KOG1002|consen 734 IGQY-RPVKVVRFCIEN 749 (791)
T ss_pred hcCc-cceeEEEeehhc
Confidence 8874 335566665544
No 149
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.87 E-value=3.1e-09 Score=89.68 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=59.2
Q ss_pred CCceEEEEccCCCchHHHHH-----HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcce
Q 010534 76 VRKVILHVGPTNSGKTHQAL-----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~-----~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (508)
+++..++-..+|+|||...+ +.+.+.++++++.|||.++.++++.++...+.+....-. .....+..+-++|..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~-~~~~g~~~i~vMc~a 81 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARM-RTHFGSSIIDVMCHA 81 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS-----SSSSEEEEEHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeee-ccccCCCcccccccH
Confidence 57888999999999999753 344567899999999999999999998654333321111 112234555566642
Q ss_pred ec-----c--ccCCccEEEEccccccC
Q 010534 151 MA-----D--VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 151 ~~-----~--~l~~~~~iViDEah~~~ 170 (508)
.+ + ...+|++||+||||-..
T Consensus 82 t~~~~~~~p~~~~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 82 TYGHFLLNPCRLKNYDVIIMDECHFTD 108 (148)
T ss_dssp HHHHHHHTSSCTTS-SEEEECTTT--S
T ss_pred HHHHHhcCcccccCccEEEEeccccCC
Confidence 22 1 24889999999999864
No 150
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.76 E-value=1.9e-07 Score=100.45 Aligned_cols=98 Identities=23% Similarity=0.290 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcccccccCcccccCC
Q 010534 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLT 329 (508)
Q Consensus 251 ~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s 329 (508)
.+-|...|.-.|. -..-+.|...-++|...+++|+....-...|++|-..+.|||+ ..|.|||||. .++
T Consensus 1289 LDVLeqFLnyHgy-lY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs---------DwN 1358 (1958)
T KOG0391|consen 1289 LDVLEQFLNYHGY-LYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS---------DWN 1358 (1958)
T ss_pred HHHHHHHHhhcce-EEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC---------CCC
Confidence 3334444444444 5667789999999999999999855556889999999999999 7999999987 334
Q ss_pred hhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 330 VPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 330 ~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+..=.|---|+.|.|.. ..-.+|++.++.
T Consensus 1359 PtMDaQAQDrChRIGqt-RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1359 PTMDAQAQDRCHRIGQT-RDVHIYRLISER 1387 (1958)
T ss_pred chhhhHHHHHHHhhcCc-cceEEEEeeccc
Confidence 43333333333333332 126788888775
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=9.8e-07 Score=94.92 Aligned_cols=93 Identities=19% Similarity=0.083 Sum_probs=67.0
Q ss_pred ceEEEEccCCCchHHHHHH-HH---HcCCCEEEEcchHHHHHHHHHHHH----hCCCceeeecccccc----ccCCCcEE
Q 010534 78 KVILHVGPTNSGKTHQALS-RL---ESSSSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQERE----EVDGAKHR 145 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~-~l---~~~~~~i~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~----~~~~~~~i 145 (508)
+--|....||-|||+++.. .. +.++.+-++.+.--||..=++.+. .+|+.|+++.++... ..-.+.++
T Consensus 99 ~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DIt 178 (939)
T PRK12902 99 EGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDIT 178 (939)
T ss_pred CCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCeE
Confidence 4447899999999999732 22 245566778888889887766665 469999998765432 23367899
Q ss_pred EEcceec--c-------------ccCCccEEEEccccccC
Q 010534 146 AVTVEMA--D-------------VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 146 v~T~e~~--~-------------~l~~~~~iViDEah~~~ 170 (508)
++|..-+ + ....+.+.||||||.+.
T Consensus 179 YgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 179 YATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9997332 1 12779999999999874
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.66 E-value=7.8e-08 Score=102.51 Aligned_cols=83 Identities=29% Similarity=0.269 Sum_probs=70.1
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCC-eeEEEecccccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCCC
Q 010534 265 LCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342 (508)
Q Consensus 265 ~v~~lhg~l~~~~R~~~~~~f~~~~g~-~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR 342 (508)
+..-+.|....++|-..++.|+.|+.. ..+|.+|-+.+.|+|+ -++.||.+|. .+++....|+--||.|
T Consensus 752 kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifds---------dwnp~~d~qaqdrahr 822 (1157)
T KOG0386|consen 752 KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDS---------DWNPHQDLQAQDRAHR 822 (1157)
T ss_pred heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecC---------CCCchhHHHHHHHHHH
Confidence 677889999999999999999996554 4688999999999999 4999999988 5688999999999999
Q ss_pred CCCCCCcEEEEEecC
Q 010534 343 YGSKFPVGEVTCLDS 357 (508)
Q Consensus 343 ~g~~~~~G~~~~~~~ 357 (508)
.|.. ....++++..
T Consensus 823 igq~-~evRv~rl~t 836 (1157)
T KOG0386|consen 823 IGQK-KEVRVLRLIT 836 (1157)
T ss_pred hhch-hheeeeeeeh
Confidence 9985 4455555544
No 153
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.50 E-value=1.2e-06 Score=90.33 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=74.0
Q ss_pred HHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC-CeeEEEecccccccccc-cccEEEEcccccccCcccccCChhh
Q 010534 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPE 332 (508)
Q Consensus 255 ~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g-~~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~ 332 (508)
...|++.+. ....+||....++|..+++.|+...| ..-.|++-.+.+.|+|+ ...++|..|+ -++++-
T Consensus 763 ~~hi~~~g~-~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl---------HWNPaL 832 (901)
T KOG4439|consen 763 RKHIQKGGH-IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL---------HWNPAL 832 (901)
T ss_pred HHHHhhCCe-eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec---------ccCHHH
Confidence 344544444 77889999999999999999998555 55566777899999999 7999999999 558888
Q ss_pred HHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 333 VKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 333 ~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
-.|-.-|.-|.|.. ..-.++++.-.+
T Consensus 833 EqQAcDRIYR~GQk-K~V~IhR~~~~g 858 (901)
T KOG4439|consen 833 EQQACDRIYRMGQK-KDVFIHRLMCKG 858 (901)
T ss_pred HHHHHHHHHHhccc-CceEEEEEEecC
Confidence 89999999999985 445566664443
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.49 E-value=9.1e-06 Score=88.64 Aligned_cols=86 Identities=22% Similarity=0.243 Sum_probs=59.8
Q ss_pred eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccccc---------EEEEccc
Q 010534 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS---------RIIFSTM 317 (508)
Q Consensus 247 s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~---------~VI~~~~ 317 (508)
|....+.+++.|...+. ..-++++..-..+-.-+.+.=+. | .|-||||++|||-||-.. +||-...
T Consensus 637 SVe~SE~lS~~L~~~gI-~H~VLNAK~h~~EAeIVA~AG~~--G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer 711 (1112)
T PRK12901 637 SVEISELLSRMLKMRKI-PHNVLNAKLHQKEAEIVAEAGQP--G--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER 711 (1112)
T ss_pred cHHHHHHHHHHHHHcCC-cHHHhhccchhhHHHHHHhcCCC--C--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccC
Confidence 68888888888888765 55555665433322222232222 4 599999999999999422 4554433
Q ss_pred ccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 318 ~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
+.|..--.|-.|||||-|..
T Consensus 712 ---------heSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 712 ---------HESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred ---------CCcHHHHHHHhcccccCCCC
Confidence 66899999999999999987
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.48 E-value=1.2e-06 Score=98.29 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC-CCcEEEEEecC
Q 010534 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDS 357 (508)
Q Consensus 279 ~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~-~~~G~~~~~~~ 357 (508)
.....+|..++...++||-+|++-+|.|-|+-+.+..|- |+---.++|-+-|+.|.-++ +..|.++.+..
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK---------~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK---------PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEEecc---------ccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 444555544457889999999999999999877877776 66777899999999998877 57899888766
No 156
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.48 E-value=8.3e-07 Score=87.21 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=74.4
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH---cC------CCEEEEcchHHHHHHHHHHHHhC----CCceeeecccc------
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE---SS------SSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQE------ 135 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~---~~------~~~i~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~------ 135 (508)
...+..++..++|+|||.+++..+. .. +.++|++|. .+..++...+.++ ..++....|..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 3567899999999999999765543 22 148999999 7778888888754 34666666665
Q ss_pred ccccCCCcEEEEcceecc-----c----c--CCccEEEEccccccCCCCcChHHHHHHhcccCCceE
Q 010534 136 REEVDGAKHRAVTVEMAD-----V----V--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191 (508)
Q Consensus 136 ~~~~~~~~~iv~T~e~~~-----~----l--~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~ 191 (508)
........++++|++.+. . + .++++||+||+|.+.+. .......+..+.+....
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~~~~~~ 166 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLRARYRW 166 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCCECEEE
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccccceEE
Confidence 233446778888887665 1 1 45999999999999633 55556666666544333
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.48 E-value=4.5e-06 Score=86.19 Aligned_cols=107 Identities=23% Similarity=0.262 Sum_probs=83.1
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMK 318 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~~ 318 (508)
.++++| --+.+.-+.++|.-.++ ...-+.|+....+|+.+++.|.. +...-+|++|-+.+-|||+ -.+.||+|+.
T Consensus 1046 RvL~yfQMTkM~dl~EdYl~yr~Y-~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdS- 1122 (1185)
T KOG0388|consen 1046 RVLMYFQMTKMIDLIEDYLVYRGY-TYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDS- 1122 (1185)
T ss_pred eEEehhHHHHHHHHHHHHHHhhcc-ceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecC-
Confidence 344555 34556667777766666 78889999999999999999998 4567789999999999999 5999999988
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.+++..=.|-..||.|.|.. ..-.||++....
T Consensus 1123 --------DWNPT~D~QAMDRAHRLGQT-rdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1123 --------DWNPTADQQAMDRAHRLGQT-RDVTVYRLITRG 1154 (1185)
T ss_pred --------CCCcchhhHHHHHHHhccCc-cceeeeeecccc
Confidence 45666677888888888875 335567765544
No 158
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.26 E-value=2.8e-07 Score=98.91 Aligned_cols=151 Identities=21% Similarity=0.160 Sum_probs=109.8
Q ss_pred CCCCCccccchHHHhcCCceEEEEccCCCchHHHHHHHHH------cCCCEEEEcchHHHHHHHHHHHHhC----CCcee
Q 010534 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCD 129 (508)
Q Consensus 60 ~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~------~~~~~i~l~P~r~La~q~~~~l~~~----g~~~~ 129 (508)
..+.+.|..+......-..+.++-+|||||||.+|-..+. ..++++|+.|..+|+.+-.+++... |+++.
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 3556667633322224577889999999999999854442 2368899999999999888887732 78888
Q ss_pred eeccccccc---cCCCcEEEEcceecccc----------CCccEEEEccccccCCCCcChHHHHHHhccc------CCce
Q 010534 130 LITGQEREE---VDGAKHRAVTVEMADVV----------SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC------ANEL 190 (508)
Q Consensus 130 ~~~g~~~~~---~~~~~~iv~T~e~~~~l----------~~~~~iViDEah~~~~~~rg~~~~~~ll~l~------~~~~ 190 (508)
-.+|+.... ..++.++++|++.++.. ..++.+|+||.|..++ +||+.+..+..... .+.+
T Consensus 1006 e~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~v 1084 (1230)
T KOG0952|consen 1006 ELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPV 1084 (1230)
T ss_pred eccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcch
Confidence 888887654 34788999999988754 5699999999999986 67877554443332 2455
Q ss_pred EEEccCCcchHHHHHHhHcCC
Q 010534 191 HLCGDPAAVPLIQQILQVTGD 211 (508)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~ 211 (508)
++.+.++...+..++.+|.+.
T Consensus 1085 r~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1085 RYLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred hhhhHhhhhhccHHHHHHhCC
Confidence 667766667777778887765
No 159
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.17 E-value=8.3e-06 Score=76.85 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCCccc-cchHHHhcCCce-EEEEccCCCchHHHH---HHHH---------HcCCCEEEEcchHHHHHHHHHHHHh
Q 010534 62 LTRPHT-WYPLARKKVRKV-ILHVGPTNSGKTHQA---LSRL---------ESSSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~~~~~-~iv~~pTGsGKT~~~---~~~l---------~~~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+++.|. ++-.+ +.... .+|.||.|+|||+.. +..+ ..++++++++|+...+.++.+++.+
T Consensus 2 ln~~Q~~Ai~~~--~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSA--LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHH--CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHH--HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 455666 66666 45665 999999999999874 2333 2345789999999999999999987
No 160
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.14 E-value=4.9e-05 Score=81.06 Aligned_cols=84 Identities=21% Similarity=0.206 Sum_probs=66.6
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCC--eeEEEecccccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCC
Q 010534 265 LCSIVYGSLPPETRTRQATRFNDASSE--FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (508)
Q Consensus 265 ~v~~lhg~l~~~~R~~~~~~f~~~~g~--~~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRag 341 (508)
...-+.|+.....|....+.|++|.+. +-.||+|-+.+-|||+ -+.+||++|. .++++-=.|-+=|+-
T Consensus 1190 DyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa---------sWNPSyDtQSIFRvy 1260 (1567)
T KOG1015|consen 1190 DYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA---------SWNPSYDTQSIFRVY 1260 (1567)
T ss_pred ceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec---------ccCCccchHHHHHHH
Confidence 466788999999999999999995433 4689999999999999 7999999888 346666678888888
Q ss_pred CCCCCCCcEEEEEecCC
Q 010534 342 RYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 342 R~g~~~~~G~~~~~~~~ 358 (508)
|+|.. .-.++|+|...
T Consensus 1261 RfGQt-KPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1261 RFGQT-KPVYIYRFIAQ 1276 (1567)
T ss_pred hhcCc-Cceeehhhhhc
Confidence 88875 33566666543
No 161
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.11 E-value=2.8e-05 Score=80.10 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=62.3
Q ss_pred ccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH----HHHH-cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 55 KKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 55 ~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~----~~l~-~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
..+++..++..|. +...+ +++...+|.||+|+|||.... +.+. .++.+++|+|....+.|+++.+.+.|+++
T Consensus 404 s~~~lpkLN~SQ~~AV~~V--L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKV 481 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKV 481 (935)
T ss_pred cCCCchhhchHHHHHHHHH--HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceE
Confidence 4458899999999 99888 679999999999999999842 2222 35788999999999999999999888877
Q ss_pred eee
Q 010534 129 DLI 131 (508)
Q Consensus 129 ~~~ 131 (508)
.-+
T Consensus 482 vRl 484 (935)
T KOG1802|consen 482 VRL 484 (935)
T ss_pred eee
Confidence 544
No 162
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.09 E-value=8.8e-06 Score=74.63 Aligned_cols=124 Identities=22% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccc
Q 010534 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~ 136 (508)
|++-|. ++..+....++.+++.||.|+|||+.. ...+.. +.++++++||...+..+.+.. |+++.-+.....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~---~~~a~Ti~~~l~ 78 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT---GIEAQTIHSFLY 78 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH---TS-EEEHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh---CcchhhHHHHHh
Confidence 455666 777665556678999999999999984 233333 457889999999998877764 344333322111
Q ss_pred cccCCCcEEEEcceeccccCCccEEEEccccccCCCCcChHHHHHHhcccC--CceEEEccCCc
Q 010534 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAA 198 (508)
Q Consensus 137 ~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~--~~~~~~~~~~~ 198 (508)
..... ..+.-..+...+++|||||-++... .+...+..... ..+.++|+..-
T Consensus 79 ~~~~~------~~~~~~~~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 79 RIPNG------DDEGRPELPKKDVLIVDEASMVDSR----QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp EECCE------ECCSSCC-TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cCCcc------cccccccCCcccEEEEecccccCHH----HHHHHHHHHHhcCCEEEEECCcch
Confidence 11000 0000001566789999999998632 22333322332 35667777654
No 163
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.02 E-value=1.4e-05 Score=81.86 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=49.7
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH----HHHHHcCCCEEEEcchHHHHHHHHHHHH
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l~P~r~La~q~~~~l~ 122 (508)
..+...|. ++..+... ....++.||+|+|||+.. .+.+..++++++|+|+.+.+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~-k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINN-KDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhcc-CCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 34566666 66666432 378899999999999984 5677788999999999999999999866
No 164
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.84 E-value=9.5e-05 Score=79.82 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH----HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~----~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
..++..|. ++..+.. ....++|.||+|+|||+.+. +.+..+.++++++|+...+.++.+++.+.+++
T Consensus 156 ~~ln~~Q~~Av~~~l~-~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~ 227 (637)
T TIGR00376 156 PNLNESQKEAVSFALS-SKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQK 227 (637)
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCc
Confidence 34677777 6766532 33789999999999999853 34445678999999999999999999875443
No 165
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.80 E-value=0.00085 Score=70.51 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=63.4
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCCCCe-eEEEecccccccccc-cccEEEEcccccccCcccccCChhhHHhhhccCCCCC
Q 010534 267 SIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344 (508)
Q Consensus 267 ~~lhg~l~~~~R~~~~~~f~~~~g~~-~ilVaT~~~~~Gidi-pv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g 344 (508)
.-+.|..+.++|.+.++.|++++|-. -++++|.+..-|||+ ....+|.++. -+.+.-=.|.+-|+-|+|
T Consensus 765 ~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda---------~wnpchdaqavcRvyrYG 835 (1387)
T KOG1016|consen 765 LRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDA---------CWNPCHDAQAVCRVYRYG 835 (1387)
T ss_pred ecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEe---------ecCccccchhhhhhhhhc
Confidence 35678899999999999999965544 789999999999999 7666666555 235666677778888888
Q ss_pred CCCCcEEEEEecCCC
Q 010534 345 SKFPVGEVTCLDSED 359 (508)
Q Consensus 345 ~~~~~G~~~~~~~~~ 359 (508)
.. ....||++..+.
T Consensus 836 Q~-KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 836 QQ-KPCFVYRLVMDN 849 (1387)
T ss_pred Cc-CceeEEeehhhh
Confidence 75 447778876654
No 166
>PF13245 AAA_19: Part of AAA domain
Probab=97.79 E-value=7.4e-05 Score=56.89 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=36.9
Q ss_pred CCceEEEEccCCCchHHHHHHH---HHc-----CCCEEEEcchHHHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR---LES-----SSSGIYCGPLRLLAWEVAKRL 121 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~---l~~-----~~~~i~l~P~r~La~q~~~~l 121 (508)
+++.++|.||.|||||+.+... +.. +.+++++.|++.++.++.+++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3677888999999999775332 232 457899999999999999999
No 167
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.70 E-value=4.2e-05 Score=77.03 Aligned_cols=82 Identities=26% Similarity=0.256 Sum_probs=56.2
Q ss_pred ceEEEEccCCCchHHHHHHHHH------cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcc--
Q 010534 78 KVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~------~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (508)
+.++|.|..|||||+.++..+. .+.+++++++...|...+.+.+.....+ .. ....+..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------~~------~~~~~~~~~~ 69 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------KL------KKSDFRKPTS 69 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc------ch------hhhhhhhhHH
Confidence 5789999999999999865443 3457899999999999888888753200 00 00000011
Q ss_pred ------eeccccCCccEEEEccccccCC
Q 010534 150 ------EMADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 150 ------e~~~~l~~~~~iViDEah~~~~ 171 (508)
........+++|||||||.+..
T Consensus 70 ~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 70 FINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1223447899999999999975
No 168
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.62 E-value=0.0001 Score=78.51 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=39.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHH------cCCCEEEEcchHHHHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~------~~~~~i~l~P~r~La~q~~~~l~ 122 (508)
+++.+++.+|||+|||++++.+.. .+++++|++||++|+.|+.+.+.
T Consensus 15 ~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 15 QKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred cCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 578899999999999999865442 25788999999999999998766
No 169
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.56 E-value=0.0002 Score=63.89 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHhcCC-CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc--ccccccccc--
Q 010534 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN-- 308 (508)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~--~~~~Gidip-- 308 (508)
.+..+|.++|+| |.+..+.+.+.++.... ..+.++.- ....+...++.|++ +.--||+|+. .+..|||+|
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~--~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR--GEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC--SSSEEEEEETTSCCGSSS--ECE
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh--ccCeEEEEEecccEEEeecCCCc
Confidence 344567788888 89999999998876531 01122222 24456689999999 7778999998 999999995
Q ss_pred -ccEEEEcccccccCc---------------------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 309 -ISRIIFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 309 -v~~VI~~~~~~~d~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
++.||..++|...+. -..|.......|-+||+-|... ..|.++.+...
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~--D~g~i~llD~R 150 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED--DYGVIILLDSR 150 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEESGG
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC--CcEEEEEEcCc
Confidence 888999888763321 0123345678899999999886 46777777654
No 170
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.56 E-value=0.00019 Score=65.61 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH----HHHHcC--CCEEEEcchHH
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESS--SSGIYCGPLRL 112 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~----~~l~~~--~~~i~l~P~r~ 112 (508)
-.+.-|. .+..+. +.+.+++.||.|||||+.|+ ..+.++ .+.+|+-|..+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 3455666 556554 68899999999999999964 444443 25577777654
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.0071 Score=65.59 Aligned_cols=94 Identities=16% Similarity=-0.004 Sum_probs=56.7
Q ss_pred CceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHH----HHHHHHHhCCCceeeeccccccc----cCCCcE
Q 010534 77 RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW----EVAKRLNKANVSCDLITGQEREE----VDGAKH 144 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~----q~~~~l~~~g~~~~~~~g~~~~~----~~~~~~ 144 (508)
+..-+.-.-||-|||+++..+. +.++.+-++...-=||. ++..-+..+|..+++...+.... .-...+
T Consensus 93 h~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~~DI 172 (822)
T COG0653 93 HLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYACDI 172 (822)
T ss_pred cCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHhcCc
Confidence 4455788999999999963322 22334444433333433 44444456799998876654322 225667
Q ss_pred EEEcceecc---------------ccCCccEEEEccccccC
Q 010534 145 RAVTVEMAD---------------VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 145 iv~T~e~~~---------------~l~~~~~iViDEah~~~ 170 (508)
.+.|..-+. ....+.+.|+||++.+.
T Consensus 173 tY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 173 TYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 777752221 12568889999998774
No 172
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.28 E-value=0.0008 Score=73.85 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHHcCC---CEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESSS---SGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~~~---~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
..+++.|. ++..+ ..++.+++.|+.|+|||+.+ +..+...+ .+++++||--.|..+.+. .|.+..-++
T Consensus 322 ~~l~~~Q~~Ai~~~--~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~---~g~~a~Tih 396 (720)
T TIGR01448 322 KGLSEEQKQALDTA--IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEV---TGLTASTIH 396 (720)
T ss_pred CCCCHHHHHHHHHH--HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHh---cCCccccHH
Confidence 45788888 87776 45789999999999999985 33344333 456679998888755443 233322211
Q ss_pred cccccccCCCcEEEEcceeccccCCccEEEEccccccCCCCcChHHHHHHhcccC-CceEEEccCCc
Q 010534 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198 (508)
Q Consensus 133 g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~-~~~~~~~~~~~ 198 (508)
.-........ ...........+++|||||+|+... .+...+..++. ..+.++|+...
T Consensus 397 ~lL~~~~~~~-----~~~~~~~~~~~~llIvDEaSMvd~~----~~~~Ll~~~~~~~rlilvGD~~Q 454 (720)
T TIGR01448 397 RLLGYGPDTF-----RHNHLEDPIDCDLLIVDESSMMDTW----LALSLLAALPDHARLLLVGDTDQ 454 (720)
T ss_pred HHhhccCCcc-----chhhhhccccCCEEEEeccccCCHH----HHHHHHHhCCCCCEEEEECcccc
Confidence 1110000000 0000111245789999999999632 22333333332 34566666543
No 173
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.24 E-value=0.0011 Score=75.20 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=89.2
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCC-eEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---ccEE
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKH-LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~-~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip---v~~V 312 (508)
.+|.++|+| |.+..+.+++.|...... ...++.=+++...|.++.+.|+. ++-.||++|+.+.+|||+| .+.|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~--~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ--FDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh--cCCeEEEecCcccCccccCCCceEEE
Confidence 456777777 799999999999764321 22223223333456789999998 6667999999999999995 6889
Q ss_pred EEcccccccCc-----------------c----cccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-HHHHhhhcCC
Q 010534 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKSLLEP 370 (508)
Q Consensus 313 I~~~~~~~d~~-----------------~----~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-~~~~~~~~~~ 370 (508)
|...+|.-.+. . .-|.....+.|-+||.=|... ..|.++.+...-. +.|-+.+-..
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~--D~G~v~ilD~R~~~k~Yg~~~l~s 906 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTET--DRGTVFVLDRRLTTTSYGKYFLES 906 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCC--ceEEEEEecCccccchHHHHHHHh
Confidence 98887753222 0 112345677999999999876 4588888876632 3454444333
Q ss_pred Cc
Q 010534 371 SP 372 (508)
Q Consensus 371 ~~ 372 (508)
.|
T Consensus 907 LP 908 (928)
T PRK08074 907 LP 908 (928)
T ss_pred CC
Confidence 33
No 174
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.16 E-value=0.00079 Score=65.64 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=39.2
Q ss_pred CCceEEEEccCCCchHHHHHHHH----Hc-CC-----CEEEEcchHHHHHHHHHHHHhC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ES-SS-----SGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~-~~-----~~i~l~P~r~La~q~~~~l~~~ 124 (508)
+++++++.+|||+|||++++.+. .. .. +++|+.+|..+..|....+++.
T Consensus 26 ~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred cCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 57899999999999999975433 32 22 6899999999998888877764
No 175
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.16 E-value=0.00079 Score=65.64 Aligned_cols=49 Identities=24% Similarity=0.148 Sum_probs=39.2
Q ss_pred CCceEEEEccCCCchHHHHHHHH----Hc-CC-----CEEEEcchHHHHHHHHHHHHhC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ES-SS-----SGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~-~~-----~~i~l~P~r~La~q~~~~l~~~ 124 (508)
+++++++.+|||+|||++++.+. .. .. +++|+.+|..+..|....+++.
T Consensus 26 ~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 26 RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred cCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 57899999999999999975433 32 22 6899999999998888877764
No 176
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.13 E-value=0.00092 Score=56.74 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=15.4
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
+++.+++.||+|+|||+.+-...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999975444
No 177
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0025 Score=72.33 Aligned_cols=107 Identities=24% Similarity=0.220 Sum_probs=88.3
Q ss_pred EEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEccccc
Q 010534 242 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKK 319 (508)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~~~~ 319 (508)
+++|. -.....-+...++..+ .....++|+++.+.|...++.|.++++..-++++|.+++.|+|+ ..++||++|.
T Consensus 714 vlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~-- 790 (866)
T COG0553 714 VLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP-- 790 (866)
T ss_pred EEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc--
Confidence 44444 3666777788887777 37999999999999999999999954567788888999999999 6999999988
Q ss_pred ccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 320 ~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+++++...|...||.|.|.. ..-.++.+..++
T Consensus 791 -------~wnp~~~~Qa~dRa~RigQ~-~~v~v~r~i~~~ 822 (866)
T COG0553 791 -------WWNPAVELQAIDRAHRIGQK-RPVKVYRLITRG 822 (866)
T ss_pred -------ccChHHHHHHHHHHHHhcCc-ceeEEEEeecCC
Confidence 88999999999999999885 445567776655
No 178
>PRK06526 transposase; Provisional
Probab=97.07 E-value=0.00083 Score=64.07 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=43.5
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
.++++++.||+|+|||+.+. ..+...|..++......+..++...... |. ..+.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~---------~~-------------~~~~l 154 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHA---------GR-------------LQAEL 154 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhc---------Cc-------------HHHHH
Confidence 47899999999999999963 2233334334444444455444322100 00 00123
Q ss_pred cccCCccEEEEccccccC
Q 010534 153 DVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~ 170 (508)
..+.+++++||||+|...
T Consensus 155 ~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 155 VKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred HHhccCCEEEEcccccCC
Confidence 345678999999999874
No 179
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0011 Score=63.70 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=47.4
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
+++++++.||+|+|||+.+. ..+.+.+..++..+...|..++...... +. ..+.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~---------~~-------------~~~~l 162 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRE---------LQ-------------LESAI 162 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhC---------Cc-------------HHHHH
Confidence 57889999999999998853 2233444444555556666666432211 00 00234
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
..+.+++++||||.+....
T Consensus 163 ~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 163 AKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred HHHhcCCEEEEeccccccC
Confidence 4567889999999998753
No 180
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0018 Score=65.42 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCceEEEEccCCCchHHHHHHH---HH-----cCCCEEEE--cchHHHHHHHHHHHHh-CCCceeeeccccccccCCCcE
Q 010534 76 VRKVILHVGPTNSGKTHQALSR---LE-----SSSSGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKH 144 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~---l~-----~~~~~i~l--~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~~~~~~ 144 (508)
..++++++||||+|||+.+... +. ++.++.++ =+.|.-+.++...+.+ +|+++.........
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l------- 245 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDL------- 245 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHH-------
Confidence 3578999999999999996322 11 12344333 5567766666666554 67776432211100
Q ss_pred EEEcceeccccCCccEEEEccccccC
Q 010534 145 RAVTVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 145 iv~T~e~~~~l~~~~~iViDEah~~~ 170 (508)
...+..+.++++|+||++....
T Consensus 246 ----~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 ----KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred ----HHHHHHhCCCCEEEEcCCCCCc
Confidence 0122334789999999998764
No 181
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.99 E-value=0.0029 Score=67.66 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=42.0
Q ss_pred Cccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHHc---C---CCEEEEcchHHHHHHHHHHHHh
Q 010534 64 RPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES---S---SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 64 ~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~---~---~~~i~l~P~r~La~q~~~~l~~ 123 (508)
..|. ++-.+ +.++.++|.|+.|+|||+.. +..+.+ . .++++++||--.|..+.+.+..
T Consensus 148 ~~Qk~A~~~a--l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALA--LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHH--hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3454 55555 56899999999999999985 233322 1 3578889999998888877654
No 182
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.96 E-value=0.0032 Score=68.23 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=76.3
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHH-HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecc
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l-~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (508)
...++..|. |+-.+.+ ...-.+|.|=+|+|||+.. ++.| ..+++++..+-|...+..+.-+++..|+...-+-.
T Consensus 667 ~~~LN~dQr~A~~k~L~-aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~ 745 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALA-AEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGS 745 (1100)
T ss_pred HhhcCHHHHHHHHHHHh-ccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCC
Confidence 356778888 7766543 3556788999999999995 3333 34667888899999999999999987766432211
Q ss_pred ccc-----------------------cccCCCcEEEEcc-eecc---ccCCccEEEEccccccCCC
Q 010534 134 QER-----------------------EEVDGAKHRAVTV-EMAD---VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 134 ~~~-----------------------~~~~~~~~iv~T~-e~~~---~l~~~~~iViDEah~~~~~ 172 (508)
.++ ...+...++.||- ..-+ ..+++|++|||||-++..+
T Consensus 746 ~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 746 EEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccccc
Confidence 111 1122445566654 2222 2388999999999998744
No 183
>PRK04296 thymidine kinase; Provisional
Probab=96.94 E-value=0.00039 Score=63.47 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=24.4
Q ss_pred CceEEEEccCCCchHHHHHHHHHc----CCCEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQALSRLES----SSSGIYCGP 109 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P 109 (508)
+..+++.||+|+|||+.++..+.. +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 567899999999999998665532 345566655
No 184
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.91 E-value=0.005 Score=67.56 Aligned_cols=123 Identities=19% Similarity=0.195 Sum_probs=88.5
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCe-eEEEeccccccccccc---ccEE
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNLN---ISRI 312 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~-~ilVaT~~~~~Gidip---v~~V 312 (508)
.++.++|+| |.+....+.+.+...........+|..+.. ..++.|+. +.- -++|+|..+.+|||+| .+.|
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~--~~~~~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKA--SGEGLILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHH--hcCCeEEEeeccccCcccCCCCCeeEE
Confidence 567788888 789999999999876542245556665555 78888887 322 7999999999999995 7789
Q ss_pred EEcccccccCc---------------------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-HHHHhhh
Q 010534 313 IFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKSL 367 (508)
Q Consensus 313 I~~~~~~~d~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-~~~~~~~ 367 (508)
|+.+.+.-.++ -..|.....+.|-+||+=|... ..|.++.+...-. ..+.+.+
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~--D~G~ivllD~R~~~~~y~~~l 627 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSED--DRGVIVLLDKRYATKRYGKLL 627 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCC--CceEEEEecccchhhhHHHHH
Confidence 98888764332 1233467789999999999654 5688888876543 2344433
No 185
>PRK10536 hypothetical protein; Provisional
Probab=96.86 E-value=0.0013 Score=62.02 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=26.8
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~ 96 (508)
++.-.+..|. .+-.+ .++..+++.||+|||||+.+..
T Consensus 56 ~i~p~n~~Q~~~l~al--~~~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 56 PILARNEAQAHYLKAI--ESKQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred cccCCCHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHH
Confidence 4555666666 44444 3477999999999999999744
No 186
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.84 E-value=0.0016 Score=61.35 Aligned_cols=96 Identities=26% Similarity=0.258 Sum_probs=52.0
Q ss_pred EEEEccCCCchHHHHHHHHHcCCCEEEE---cchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceecccc-
Q 010534 80 ILHVGPTNSGKTHQALSRLESSSSGIYC---GPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV- 155 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l~~~~~~i~l---~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l- 155 (508)
++|.|+.|||||+.+...+... +++ .|+..+..... ..........+.+..+...-
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~s~~~~~~~~ 60 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR---LVVTVISPTIELYTEWL-----------------PDPPSKSVRTVDSFLKALVKP 60 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc---cccccccccceeccccc-----------------cccCCccccEEeEhhhccccc
Confidence 4789999999999887777655 333 34333332222 00001111122222222211
Q ss_pred CCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcc
Q 010534 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199 (508)
Q Consensus 156 ~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~ 199 (508)
...+.+||||++++.. |.... ++.......+.++|++...
T Consensus 61 ~~~~~liiDE~~~~~~---g~l~~-l~~~~~~~~~~l~GDp~Q~ 100 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP---GYLLL-LLSLSPAKNVILFGDPLQI 100 (234)
T ss_pred CcCCEEEEeccccCCh---HHHHH-HHhhccCcceEEEECchhc
Confidence 3689999999999842 33322 3333444567777776543
No 187
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.83 E-value=0.0069 Score=66.47 Aligned_cols=115 Identities=22% Similarity=0.239 Sum_probs=79.2
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcC--CCCCeeEEEeccccccccccc---ccEE
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLN---ISRI 312 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~~~Gidip---v~~V 312 (508)
+|..+|+| |.+..+.+++.|..... .-...+|.. .|..+++.|++ ..++-.||++|..+.+|||+| .+.|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 34566666 78888999988875433 233446653 34577766764 114557999999999999995 7899
Q ss_pred EEcccccccCc-----------------c----cccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 313 IFSTMKKFDGV-----------------E----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 313 I~~~~~~~d~~-----------------~----~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|+.++|.-.++ . .-|.....+.|-+||.=|... ..|.++.+...-
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~--D~G~i~ilD~R~ 675 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ--DRGRVTILDRRL 675 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC--ceEEEEEEcccc
Confidence 99887753322 0 112345568999999999875 458888887763
No 188
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.83 E-value=0.002 Score=61.44 Aligned_cols=107 Identities=20% Similarity=0.061 Sum_probs=67.3
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH-HHHH---HcCCCEEEEcchHHHHHHHHHHHH----hCCCceee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRL---ESSSSGIYCGPLRLLAWEVAKRLN----KANVSCDL 130 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~-~~~l---~~~~~~i~l~P~r~La~q~~~~l~----~~g~~~~~ 130 (508)
..|...|- ..-.+ .+|+ ++...||=|||+++ +.+. +.+..+=++...--||..=++.+. .+|+.++.
T Consensus 76 ~~p~~vQll~~l~L--~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 76 LRPYDVQLLGALAL--HKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp ----HHHHHHHHHH--HTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred CcccHHHHhhhhhc--ccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 34566666 33222 3455 89999999999995 2222 345556666777778776666655 46999999
Q ss_pred eccccccc----cCCCcEEEEcceecc---------------ccCCccEEEEccccccC
Q 010534 131 ITGQEREE----VDGAKHRAVTVEMAD---------------VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 131 ~~g~~~~~----~~~~~~iv~T~e~~~---------------~l~~~~~iViDEah~~~ 170 (508)
++++.... .-...++++|..-+. ....++++||||||.+.
T Consensus 152 ~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 152 ITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred CccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 98865432 225678999973321 13789999999999875
No 189
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.81 E-value=0.00052 Score=58.48 Aligned_cols=36 Identities=36% Similarity=0.398 Sum_probs=25.6
Q ss_pred CceEEEEccCCCchHHHHHHHHHcC--C--CEEEEcchHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESS--S--SGIYCGPLRL 112 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~--~--~~i~l~P~r~ 112 (508)
++.+++.||+|+|||+.+...+..- . .++++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 5789999999999999975554332 2 4666655543
No 190
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.81 E-value=0.0024 Score=65.87 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=59.5
Q ss_pred HHHHhhcccCCCccccCCCCCC----ccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----------cCCCEEEE
Q 010534 43 VIIRSYCSGSGMKKFDFTDLTR----PHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------SSSSGIYC 107 (508)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~----~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----------~~~~~i~l 107 (508)
+.+...+.+. .-..|+. +|. .-..+|.-+++.++|.|..|||||++|++.+. +++.++++
T Consensus 192 EvL~~~Lek~-----ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl 266 (747)
T COG3973 192 EVLQRVLEKN-----SSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVL 266 (747)
T ss_pred HHHHHHHHhc-----cchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEE
Confidence 4455666655 3333433 343 44456667899999999999999999987652 34568999
Q ss_pred cchHHHHHHHHHHHHhCCCce
Q 010534 108 GPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 108 ~P~r~La~q~~~~l~~~g~~~ 128 (508)
.|.+....-+...|-++|..-
T Consensus 267 ~PN~vFleYis~VLPeLGe~~ 287 (747)
T COG3973 267 GPNRVFLEYISRVLPELGEEG 287 (747)
T ss_pred cCcHHHHHHHHHhchhhccCc
Confidence 999999999999999887653
No 191
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.77 E-value=0.24 Score=50.73 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=73.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccc--ccccccc-cccEEE
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA--IGMGLNL-NISRII 313 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~--~~~Gidi-pv~~VI 313 (508)
..+.++||. |-=+-..+...|++... ..+.+|--.++.+-.+.-..|.. |+.+||+-|-= .=+=..| ++++||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~-sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENI-SFVQISEYTSNSDISRARSQFFH--GRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCC-eEEEecccCCHHHHHHHHHHHHc--CCceEEEEEhHHhhhhhceecCCcEEE
Confidence 334555555 87777788889986655 77888877888877788889999 99999999962 2334567 699999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
++++|.+ |.=..++....+.........+.+.|.++++.
T Consensus 376 FY~~P~~------p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 376 FYGPPEN------PQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EECCCCC------hhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 9999531 22233344443333321111233677777764
No 192
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.75 E-value=0.0027 Score=54.47 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGP 109 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P 109 (508)
.++.+++.||+|+|||+.+-..... +..++++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 4788999999999999986443332 344455533
No 193
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.72 E-value=0.0086 Score=66.40 Aligned_cols=47 Identities=15% Similarity=-0.077 Sum_probs=36.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc------CCCEEEEcchHHHHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~------~~~~i~l~P~r~La~q~~~~l~ 122 (508)
...++.+..+||+|||++++..+.+ -.+.|++||+.+.-..+.+.+.
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhh
Confidence 3578999999999999997665532 1356889999999888876654
No 194
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.69 E-value=0.0048 Score=66.18 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=42.0
Q ss_pred Cccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHHc---C--CCEEEEcchHHHHHHHHHHHH
Q 010534 64 RPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES---S--SSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 64 ~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~---~--~~~i~l~P~r~La~q~~~~l~ 122 (508)
..|. +.-.+ ..++.++|.|++|+|||+.. +..+.+ + .++.+++||.-.|..+.+.+.
T Consensus 155 d~Qk~Av~~a--~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 155 DWQKVAAAVA--LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred HHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 4566 66555 56899999999999999985 333322 1 245667999999998888775
No 195
>PRK12377 putative replication protein; Provisional
Probab=96.67 E-value=0.0057 Score=58.02 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=48.6
Q ss_pred CceEEEEccCCCchHHHH---HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceecc
Q 010534 77 RKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (508)
...+++.||+|+|||+.+ ...+.+.+..++..+...|..++...+.. +.. ..+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~---------~~~------------~~~~l~ 159 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN---------GQS------------GEKFLQ 159 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc---------cch------------HHHHHH
Confidence 468999999999999985 34445555555556666777766554321 000 013455
Q ss_pred ccCCccEEEEccccccC
Q 010534 154 VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 154 ~l~~~~~iViDEah~~~ 170 (508)
.+.+++++||||++...
T Consensus 160 ~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQR 176 (248)
T ss_pred HhcCCCEEEEcCCCCCC
Confidence 67889999999997654
No 196
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0039 Score=59.50 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
++.++++.||+|+|||+.+ ...+...|.-++.+++.+++.++...+.. | ... .+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-~--------~~~------------~~l~ 162 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-G--------RLE------------EKLL 162 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc-C--------chH------------HHHH
Confidence 5889999999999999995 23445667778889999999988877664 1 000 0122
Q ss_pred cccCCccEEEEccccccC
Q 010534 153 DVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~ 170 (508)
..+.+++++||||.=...
T Consensus 163 ~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 163 RELKKVDLLIIDDIGYEP 180 (254)
T ss_pred HHhhcCCEEEEecccCcc
Confidence 337889999999987654
No 197
>PRK06921 hypothetical protein; Provisional
Probab=96.63 E-value=0.0039 Score=59.99 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=43.3
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHcC-CCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLESS-SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~~-~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
.+..+++.|+||+|||+.+. ..+.+. +..++.++...+..++...+... .+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~------------------------~~~ 171 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLL------------------------EAK 171 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHH------------------------HHH
Confidence 46789999999999998853 334443 44444455555555543322100 012
Q ss_pred ccccCCccEEEEccccc
Q 010534 152 ADVVSDYDCAVIDEIQM 168 (508)
Q Consensus 152 ~~~l~~~~~iViDEah~ 168 (508)
+..+.+.+++||||+|.
T Consensus 172 ~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 172 LNRMKKVEVLFIDDLFK 188 (266)
T ss_pred HHHhcCCCEEEEecccc
Confidence 34457789999999976
No 198
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.0075 Score=57.05 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=46.5
Q ss_pred ceEEEEccCCCchHHHH---HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceeccc
Q 010534 78 KVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~ 154 (508)
..+++.|++|+|||+.+ ...+...+..+++++...+...+...+... +.. ..+.+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~---------~~~-----------~~~~l~~ 159 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS---------ETS-----------EEQLLND 159 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc---------ccc-----------HHHHHHH
Confidence 57999999999999985 334444455555556555555444333110 000 0133445
Q ss_pred cCCccEEEEccccccCCC
Q 010534 155 VSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 155 l~~~~~iViDEah~~~~~ 172 (508)
+.+++++||||++.....
T Consensus 160 l~~~dlLvIDDig~~~~s 177 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTES 177 (244)
T ss_pred hccCCEEEEeCCCCCCCC
Confidence 678999999999987543
No 199
>PRK08727 hypothetical protein; Validated
Probab=96.57 E-value=0.006 Score=57.56 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=38.6
Q ss_pred CceEEEEccCCCchHHHHHH---HHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
.+.+++.||+|+|||+.+-. .+.+ +.+++|+ |...+.....+ .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~-~~~~~~~~~~~-------------------------------~~ 88 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL-PLQAAAGRLRD-------------------------------AL 88 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-eHHHhhhhHHH-------------------------------HH
Confidence 45699999999999987432 2333 3355554 43332222111 12
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
..+.+++++||||+|.+..
T Consensus 89 ~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 89 EALEGRSLVALDGLESIAG 107 (233)
T ss_pred HHHhcCCEEEEeCcccccC
Confidence 2345678999999998863
No 200
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.49 E-value=0.0062 Score=60.75 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=49.6
Q ss_pred CCceEEEEccCCCchHHHH----HHHH--HcCCCE-EEE-cchHHHHHHHHHHH-HhCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQA----LSRL--ESSSSG-IYC-GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~----~~~l--~~~~~~-i~l-~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
+++++.++||||-|||+.. ..+. ....++ ++. =-.|.=|.++.+.. .-+|+++.++.....-.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~-------- 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELA-------- 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHH--------
Confidence 3899999999999999993 3333 233444 443 33444444444444 45677766544322111
Q ss_pred EcceeccccCCccEEEEcccccc
Q 010534 147 VTVEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (508)
+-+..+.++++|.||=+-+-
T Consensus 274 ---~ai~~l~~~d~ILVDTaGrs 293 (407)
T COG1419 274 ---EAIEALRDCDVILVDTAGRS 293 (407)
T ss_pred ---HHHHHhhcCCEEEEeCCCCC
Confidence 22344677899999887553
No 201
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.48 E-value=0.005 Score=57.71 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.0
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..+++.||+|+|||+.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999999743
No 202
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.47 E-value=0.0067 Score=58.99 Aligned_cols=80 Identities=25% Similarity=0.230 Sum_probs=44.7
Q ss_pred CCceEEEEccCCCchHHHHHH---HH-Hc-C-CCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALS---RL-ES-S-SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~---~l-~~-~-~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
++++++++||||+|||+.+.. .+ .. + .++.++ =|.|.-+.++...+. .+|+++........
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~---------- 262 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKE---------- 262 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHH----------
Confidence 467899999999999999532 22 23 3 345444 444555555444444 34555432211000
Q ss_pred EcceeccccCCccEEEEccc
Q 010534 147 VTVEMADVVSDYDCAVIDEI 166 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEa 166 (508)
-.+.+..+..+++|+||.+
T Consensus 263 -l~~~l~~~~~~d~vliDt~ 281 (282)
T TIGR03499 263 -LRKALDRLRDKDLILIDTA 281 (282)
T ss_pred -HHHHHHHccCCCEEEEeCC
Confidence 0122333466899999975
No 203
>PF13173 AAA_14: AAA domain
Probab=96.46 E-value=0.028 Score=47.57 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc---CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES---SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~---~~~~i~l 107 (508)
+++.+++.||.|+|||+.+.+.+.+ ..+.+|+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceee
Confidence 4788999999999999998776644 2455666
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.40 E-value=0.0038 Score=61.52 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCceEEEEccCCCchHHHHHHHH----HcC----CCEEEEcchHHHHHHHHHHHHh
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ESS----SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~~----~~~i~l~P~r~La~q~~~~l~~ 123 (508)
.++.++|.|+.|||||+++...+ ... .+++++.+|+.++.++..++..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 47889999999999999975433 223 3678999999999999999986
No 205
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.40 E-value=0.0043 Score=68.08 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=35.4
Q ss_pred CceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKR 120 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~ 120 (508)
++.+++.||||+|||++|+.+.. .++++||-..|+.|-+|+..+
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 47899999999999999854432 456778889999999998643
No 206
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.38 E-value=0.0045 Score=70.17 Aligned_cols=45 Identities=13% Similarity=0.026 Sum_probs=37.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKR 120 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~ 120 (508)
+++++++.||||+|||++|+.+.. .+++++|..+|+.|..|+..+
T Consensus 275 ~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 275 DSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred cCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 578889999999999999865433 356788889999999998753
No 207
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.38 E-value=0.0088 Score=66.05 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=61.1
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH--H-HHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~--~-~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (508)
..++.-|. ++..+.. .++.++|.|+.|+|||+.+ + ..+.. +.++++++||--.|..+.+. .|++..-++.-
T Consensus 351 ~~Ls~~Q~~Av~~i~~-s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~---~g~~a~Ti~~~ 426 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG-SGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE---SGIESRTLASL 426 (744)
T ss_pred CCCCHHHHHHHHHHhc-CCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc---cCCceeeHHHH
Confidence 34778888 7776642 3578999999999999984 2 22333 45678889998777666532 24432222111
Q ss_pred cccccCCCcEEEEcceeccccCCccEEEEccccccCC
Q 010534 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 135 ~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~ 171 (508)
..... .....+...++|||||+-++..
T Consensus 427 ~~~~~----------~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 427 EYAWA----------NGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred Hhhhc----------cCcccCCCCcEEEEECcccCCH
Confidence 00000 0012246789999999999863
No 208
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.36 E-value=0.0039 Score=56.48 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=34.3
Q ss_pred eEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 79 VILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.+++.||+|+|||+.+++.+. ++.+++|+. +-+...++.+++..+|...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s-~e~~~~~~~~~~~~~g~~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT-LEESPEELIENAESLGWDL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCHHHHHHHHHHcCCCh
Confidence 368999999999999766543 445677764 3455667777777666553
No 209
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.36 E-value=0.0037 Score=59.12 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
...+++.||+|+|||+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4689999999999999853
No 210
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.0097 Score=59.67 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=47.7
Q ss_pred CCceEEEEccCCCchHHHHHHH----HHcCC--CEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSR----LESSS--SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~----l~~~~--~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
++.+++++||||+|||+.+... +...+ ++.++ =+.|.-+.++.+.+. .+|+++..........
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-------- 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-------- 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH--------
Confidence 4789999999999999996332 23322 34333 233444555544444 4566554432211100
Q ss_pred EcceeccccCCccEEEEcccccc
Q 010534 147 VTVEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (508)
..+..+.+.++|+||++=..
T Consensus 208 ---~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 ---LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ---HHHHHhcCCCEEEEcCCCCC
Confidence 12334567899999999654
No 211
>PRK08116 hypothetical protein; Validated
Probab=96.32 E-value=0.0086 Score=57.70 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=45.9
Q ss_pred ceEEEEccCCCchHHHHH---HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceeccc
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~ 154 (508)
..+++.|++|+|||+.+. ..+.+.+..++..+...+...+...+...+ .. ...+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~--------~~-----------~~~~~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG--------KE-----------DENEIIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc--------cc-----------cHHHHHHH
Confidence 459999999999999963 444444555555666666665554443210 00 01134455
Q ss_pred cCCccEEEEcccccc
Q 010534 155 VSDYDCAVIDEIQML 169 (508)
Q Consensus 155 l~~~~~iViDEah~~ 169 (508)
+.+.+++||||++.-
T Consensus 176 l~~~dlLviDDlg~e 190 (268)
T PRK08116 176 LVNADLLILDDLGAE 190 (268)
T ss_pred hcCCCEEEEecccCC
Confidence 678899999999753
No 212
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.30 E-value=0.027 Score=48.47 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=59.1
Q ss_pred EcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---ccEEEEcccccccCc--------------c-cc----
Q 010534 269 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRIIFSTMKKFDGV--------------E-LR---- 326 (508)
Q Consensus 269 lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip---v~~VI~~~~~~~d~~--------------~-~~---- 326 (508)
+.-+....+...+++.|++. ++..||+||.-+.+|+|+| .+.||..++|...+. . ..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~-~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEA-CENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEeCCChhHHHHHHHHHHHc-CCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 33334454567899999872 2226999998899999995 678998887753222 0 11
Q ss_pred ---cCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 327 ---DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 327 ---p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
|.....+.|-+||+=|... ..|.++.+..
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~--D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGAN--DYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcC--ceEEEEEEec
Confidence 2235678899999999876 4577766643
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.24 E-value=0.0072 Score=61.10 Aligned_cols=89 Identities=15% Similarity=0.252 Sum_probs=56.1
Q ss_pred cCCceEEEEccCCCchHHHH--HHHHH-c-CCCEEEEcchHHHHHHH--HHHHH-hCCCceeeeccccccccCCCcEEEE
Q 010534 75 KVRKVILHVGPTNSGKTHQA--LSRLE-S-SSSGIYCGPLRLLAWEV--AKRLN-KANVSCDLITGQEREEVDGAKHRAV 147 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~--~~~l~-~-~~~~i~l~P~r~La~q~--~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~ 147 (508)
.++.++++.|+-|+|||+.+ +.... . +..+++++||-..|..+ -..+. .+++++.... .. ..-+-.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~---~~----~~~~~~ 92 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNE---KS----QCKISK 92 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccc---cc----cccccc
Confidence 46889999999999999995 33333 2 24567889999888777 22222 2344432210 00 000011
Q ss_pred cceeccccCCccEEEEccccccC
Q 010534 148 TVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 148 T~e~~~~l~~~~~iViDEah~~~ 170 (508)
...+...+...+++||||+=++.
T Consensus 93 ~~~~~~~l~~~~~lIiDEism~~ 115 (364)
T PF05970_consen 93 NSRLRERLRKADVLIIDEISMVS 115 (364)
T ss_pred cchhhhhhhhheeeecccccchh
Confidence 12445667899999999999986
No 214
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.23 E-value=0.0093 Score=54.91 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=15.6
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
.++++.||.|+|||+.|-.
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4799999999999987643
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.035 Score=57.10 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=47.7
Q ss_pred CCceEEEEccCCCchHHHHHH---HH--HcC-CCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALS---RL--ESS-SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~---~l--~~~-~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
++++++++||||+|||+.+.. .+ ..+ .++.++ =|.|.-+.++...+. ..|+++.........
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l--------- 290 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKEL--------- 290 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhH---------
Confidence 367899999999999998532 22 233 345444 455655544444443 456554332211100
Q ss_pred EcceeccccCCccEEEEcccccc
Q 010534 147 VTVEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (508)
...+..+..+++|+||.+-..
T Consensus 291 --~~~l~~~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 291 --AKALEQLRDCDVILIDTAGRS 311 (424)
T ss_pred --HHHHHHhCCCCEEEEeCCCCC
Confidence 012233467899999999664
No 216
>PRK06893 DNA replication initiation factor; Validated
Probab=96.20 E-value=0.0061 Score=57.36 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+++.||+|+|||+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456799999999999885
No 217
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.14 E-value=0.0064 Score=66.73 Aligned_cols=66 Identities=15% Similarity=0.005 Sum_probs=48.0
Q ss_pred cCCCCCCccc-cc-hHHHhc-CCceEEEEccCCCchHHHHHHHHHc-----CCCEEEEcchHHHHHHHHHHHHh
Q 010534 58 DFTDLTRPHT-WY-PLARKK-VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 58 ~~~~~~~~q~-~~-~~~~~~-~~~~~iv~~pTGsGKT~~~~~~l~~-----~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
....+++.|. .. ...... +++.+++.||||+|||+.++.+.+. +.++++..+|+.|-.|+.++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 5567777787 33 222333 4555999999999999998655432 35788999999999999877553
No 218
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.08 E-value=0.0088 Score=66.01 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=49.6
Q ss_pred cccCCCCCCccc-cchHH-Hh-cCCceEEEEccCCCchHHHHH----HHHHcC---CCEEEEcchHHHHHHHHHHHHh
Q 010534 56 KFDFTDLTRPHT-WYPLA-RK-KVRKVILHVGPTNSGKTHQAL----SRLESS---SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 56 ~~~~~~~~~~q~-~~~~~-~~-~~~~~~iv~~pTGsGKT~~~~----~~l~~~---~~~i~l~P~r~La~q~~~~l~~ 123 (508)
.|.|..+++.|. ....+ .. ..+++.++.+|||+|||++.+ .+..+. .+++|+..|..=..|..+.+++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 467777787887 22222 21 258899999999999999953 444422 4789999999988898888876
No 219
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.07 E-value=0.022 Score=61.06 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCC--CCCeeEEEecccccccccc-------
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNL------- 307 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~--~g~~~ilVaT~~~~~Gidi------- 307 (508)
..|..+|.| |.+..+.+++.|..... ....+.|..++ |...++.|+.. .|...||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 456666666 79999999999977544 34556676543 23688888871 1356899999999999999
Q ss_pred -c---ccEEEEcccccc--cCc--------------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 308 -N---ISRIIFSTMKKF--DGV--------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 308 -p---v~~VI~~~~~~~--d~~--------------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
| ++.||+..++.- |+. ...|.....+.|-+||.=|...+-..|.+..+.+.
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 2 888998776631 111 12233466789999999998763336999999877
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.92 E-value=0.017 Score=57.15 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
.++++++.||||+|||+.+ ...+...+..++..+...|..++...... .... ....+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~---------~~~~-----------~~~~~ 241 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFN---------NDKE-----------LEEVY 241 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhc---------cchh-----------HHHHH
Confidence 4688999999999999985 34445555555556666666655432110 0000 00124
Q ss_pred cccCCccEEEEccccccC
Q 010534 153 DVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~ 170 (508)
..+.+++++|||+.+...
T Consensus 242 ~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEK 259 (329)
T ss_pred HHhccCCEEEEeccCCCC
Confidence 566789999999998864
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=95.83 E-value=0.022 Score=54.63 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=42.0
Q ss_pred CCceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 76 VRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
++.++++.||+|+|||+.+... ...+.++.|+ +...|..++.......+. . ..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l~~a~~~~~~---------~-------------~~ 157 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQLSTAQRQGRY---------K-------------TT 157 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHHHHHHHCCcH---------H-------------HH
Confidence 5789999999999999986332 2333344444 445555544322211000 0 11
Q ss_pred c-cccCCccEEEEccccccC
Q 010534 152 A-DVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 152 ~-~~l~~~~~iViDEah~~~ 170 (508)
+ ..+...+++||||++...
T Consensus 158 ~~~~~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 158 LQRGVMAPRLLIIDEIGYLP 177 (259)
T ss_pred HHHHhcCCCEEEEcccccCC
Confidence 1 113466899999999764
No 222
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.83 E-value=0.025 Score=64.13 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (508)
..|+.-|. ++..+. ..++.+++.|+.|+|||+.. ...... +.+++.++||--.|..+.+ ..|++..-+.+-
T Consensus 380 ~~Ls~eQ~~Av~~i~-~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e---~~Gi~a~TIas~ 455 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA-GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEK---EAGIQSRTLSSW 455 (1102)
T ss_pred CCCCHHHHHHHHHHh-ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHH---hhCCCeeeHHHH
Confidence 46888888 777653 45789999999999999994 233333 4467778999877766543 236655444332
Q ss_pred cccccCCCcEEEEcceeccccCCccEEEEccccccC
Q 010534 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 135 ~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (508)
......+ -..+..-+++||||+.|+.
T Consensus 456 ll~~~~~----------~~~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 456 ELRWNQG----------RDQLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred HhhhccC----------ccCCCCCcEEEEECcccCC
Confidence 1111000 0235667899999999986
No 223
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.77 E-value=0.019 Score=64.72 Aligned_cols=97 Identities=20% Similarity=0.169 Sum_probs=60.2
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccc
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (508)
..+++-|. ++..+.. .+..+++.|+.|+|||+.. ...+.. +.+++.++||--.|..+.+ ..|+....+..-
T Consensus 345 ~~Ls~eQr~Av~~il~-s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e---~tGi~a~TI~sl 420 (988)
T PRK13889 345 LVLSGEQADALAHVTD-GRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEG---GSGIASRTIASL 420 (988)
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhh---ccCcchhhHHHH
Confidence 35788888 8777642 3457899999999999983 223333 4567888999887766543 124433222211
Q ss_pred cccccCCCcEEEEcceeccccCCccEEEEccccccC
Q 010534 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 135 ~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (508)
......+ ...+...+++||||+-++.
T Consensus 421 l~~~~~~----------~~~l~~~~vlIVDEASMv~ 446 (988)
T PRK13889 421 EHGWGQG----------RDLLTSRDVLVIDEAGMVG 446 (988)
T ss_pred Hhhhccc----------ccccccCcEEEEECcccCC
Confidence 1100000 1234667899999999986
No 224
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.77 E-value=0.021 Score=56.06 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=45.0
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHcCC-CEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLESSS-SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~~~-~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
.++.+++.||+|+|||+.+. ..+.+.+ ++.|+ ..-.++.++...+.. +. ..+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~-~~~~l~~~lk~~~~~---------~~-------------~~~~ 211 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL-HFPEFIRELKNSISD---------GS-------------VKEK 211 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-EHHHHHHHHHHHHhc---------Cc-------------HHHH
Confidence 35789999999999999952 3333434 44444 333455555443321 00 1244
Q ss_pred ccccCCccEEEEccccccC
Q 010534 152 ADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 152 ~~~l~~~~~iViDEah~~~ 170 (508)
+..+.+++++||||...-.
T Consensus 212 l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 212 IDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred HHHhcCCCEEEEecCCCcc
Confidence 5667899999999997653
No 225
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.75 E-value=0.01 Score=57.13 Aligned_cols=84 Identities=15% Similarity=0.102 Sum_probs=49.7
Q ss_pred ceEEEEccCCCchHHHHHHHHHcCC----------CEEEE-cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEE
Q 010534 78 KVILHVGPTNSGKTHQALSRLESSS----------SGIYC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHR 145 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~~~----------~~i~l-~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~i 145 (508)
.+++++|+||-|||.++-.+...++ .++++ .|...-....+..+- .+|.+..--.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~--------- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAK--------- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHH---------
Confidence 7799999999999999865554332 24444 666665556665543 45554322100000
Q ss_pred EEcceecccc--CCccEEEEccccccCC
Q 010534 146 AVTVEMADVV--SDYDCAVIDEIQMLGC 171 (508)
Q Consensus 146 v~T~e~~~~l--~~~~~iViDEah~~~~ 171 (508)
........+ -++.++||||+|.+..
T Consensus 133 -~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 133 -LEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred -HHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 000111222 5688999999999864
No 226
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.74 E-value=0.019 Score=52.54 Aligned_cols=86 Identities=23% Similarity=0.191 Sum_probs=45.7
Q ss_pred ceEEEEccCCCchHHHH----HHHHHcCCCEE-EE-cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEcce
Q 010534 78 KVILHVGPTNSGKTHQA----LSRLESSSSGI-YC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTVE 150 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~----~~~l~~~~~~i-~l-~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (508)
+.++++||||+|||+.+ .....++.++. +. =..|.-|.++.+.+. .+|+++....-..... . ...+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~----~---~~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA----E---IARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH----H---HHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH----H---HHHH
Confidence 57899999999999995 23334444443 33 345555555555554 5677654422111000 0 0001
Q ss_pred eccc--cCCccEEEEccccccC
Q 010534 151 MADV--VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 151 ~~~~--l~~~~~iViDEah~~~ 170 (508)
.+.. .+++++|+||-+-+..
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSS
T ss_pred HHHHHhhcCCCEEEEecCCcch
Confidence 1111 2568999999986653
No 227
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.73 E-value=0.026 Score=52.99 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.0
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.++.+++.||+|+|||+.+-
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999999853
No 228
>PTZ00293 thymidine kinase; Provisional
Probab=95.63 E-value=0.021 Score=52.35 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=46.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCc-eeeeccccccccCCCcEEEEc-c
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQEREEVDGAKHRAVT-V 149 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~-~~~~~g~~~~~~~~~~~iv~T-~ 149 (508)
.|+..++.||.|||||+..++.+. .+.+++++-|... .|.. +.. +..-.|.. ...+.+.. .
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D------tR~~--~~~~I~Sh~g~~-----~~a~~v~~~~ 69 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD------TRYS--DEQNISSHDKQM-----LKAIKVSKLK 69 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc------ccCC--CCCcEEecCCCc-----ceeEEcCCHH
Confidence 367889999999999998766553 3456777777431 1110 111 11101110 01111111 1
Q ss_pred eeccccCCccEEEEccccccC
Q 010534 150 EMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 150 e~~~~l~~~~~iViDEah~~~ 170 (508)
+....+..+++|.|||+|-+.
T Consensus 70 e~~~~~~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 70 EVLETAKNYDVIAIDEGQFFP 90 (211)
T ss_pred HHHHhccCCCEEEEEchHhhH
Confidence 333344789999999999984
No 229
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.61 E-value=0.036 Score=55.01 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=50.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC-CCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceeccc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~-~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~ 154 (508)
+=..+|+.||.|+|||+.|-..-... ....-+..+..=+.++.+.+.+. +....
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a-------------------------~~~~~ 101 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEA-------------------------RKNRL 101 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHH-------------------------HHHHh
Confidence 34778999999999999874333222 22333444443344443333321 00001
Q ss_pred cCCccEEEEccccccCCCCcChHHHHHHhccc-CCceEEEccCCc
Q 010534 155 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 198 (508)
Q Consensus 155 l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~-~~~~~~~~~~~~ 198 (508)
..+=-+++|||+|++.-. ..++++-.. ...+.++|.++.
T Consensus 102 ~gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 102 LGRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred cCCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCC
Confidence 112247899999998532 256665543 445566676544
No 230
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.59 E-value=0.016 Score=56.57 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=40.9
Q ss_pred ccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 55 KKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 55 ~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
+-+|+.-.+..|. ++..+..-.-.-|.+.|+-|||||..|+.+-++ ..+.|+.-|+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v 286 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV 286 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc
Confidence 3467887777887 888775556688999999999999997654332 23556666654
No 231
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.58 E-value=0.015 Score=41.92 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.2
Q ss_pred CceEEEEccCCCchHHH--HHHHHHcCC
Q 010534 77 RKVILHVGPTNSGKTHQ--ALSRLESSS 102 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~--~~~~l~~~~ 102 (508)
+..+++.||+|||||+. |++.++-+.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46899999999999999 677776443
No 232
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.57 E-value=0.032 Score=57.88 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=52.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcc--
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (508)
.+..+++.|++|+|||+.+++... .+++++|+.- .+-..|+..+...+|....- +.+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~-------------l~~~~e~~ 144 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERLGLPSDN-------------LYLLAETN 144 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHcCCChhc-------------EEEeCCCC
Confidence 378999999999999999876653 3457788753 34456777777776653210 112111
Q ss_pred --eecccc--CCccEEEEccccccC
Q 010534 150 --EMADVV--SDYDCAVIDEIQMLG 170 (508)
Q Consensus 150 --e~~~~l--~~~~~iViDEah~~~ 170 (508)
++...+ .+.++||||+++.+.
T Consensus 145 l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 145 LEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred HHHHHHHHHhhCCCEEEEechhhhc
Confidence 111111 468999999999774
No 233
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.57 E-value=0.074 Score=45.87 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCC---CeEEEEcCCCCHHHHHHHHHHhcCCCCC---eeEEEeccc--cccccccc---ccEEEEccccc
Q 010534 251 IYRLKKAIESRGK---HLCSIVYGSLPPETRTRQATRFNDASSE---FDVLVASDA--IGMGLNLN---ISRIIFSTMKK 319 (508)
Q Consensus 251 ~~~l~~~L~~~~~---~~v~~lhg~l~~~~R~~~~~~f~~~~g~---~~ilVaT~~--~~~Gidip---v~~VI~~~~~~ 319 (508)
.+.+++.+++.+. ..-...-+. ...+....++.|++ .. -.||+|+.- +.+|||+| .+.||..+.+.
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~l~~f~~--~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGK-DSGETEELLEKYSA--ACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECC-CCchHHHHHHHHHH--hcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3455666655432 112222232 22344678888987 22 258888876 99999995 67899888876
Q ss_pred ccCc-------------c---------cccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 320 FDGV-------------E---------LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 320 ~d~~-------------~---------~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
..+. . ..|.....+.|-+||+=|... ..|.++.+..
T Consensus 81 p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~--D~g~i~l~D~ 138 (142)
T smart00491 81 PNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN--DYGVVVLLDK 138 (142)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc--ceEEEEEEec
Confidence 4332 0 112345678999999999886 4577766644
No 234
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.037 Score=55.54 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=44.7
Q ss_pred CceEEEEccCCCchHHHHHH---HHH-cCCCEEEE-c-chHHHH-HHHHHHHHhCCCceeeeccccccccCCCcEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLE-SSSSGIYC-G-PLRLLA-WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV 149 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~-~~~~~i~l-~-P~r~La-~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (508)
.+.+.++||||+|||+.+.. .+. .+.++.++ + |.|.-+ .|+.......|+++........ + .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~--------L---~ 309 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA--------M---T 309 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHH--------H---H
Confidence 47889999999999999522 222 33455444 3 556444 4444433445655443211000 0 0
Q ss_pred eecccc---CCccEEEEcccccc
Q 010534 150 EMADVV---SDYDCAVIDEIQML 169 (508)
Q Consensus 150 e~~~~l---~~~~~iViDEah~~ 169 (508)
+.+..+ .++++|+||-+=..
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGKN 332 (436)
T ss_pred HHHHHHHhccCCCEEEEeCcccc
Confidence 111112 25899999988654
No 235
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.48 E-value=0.039 Score=55.66 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=51.1
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcc--
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (508)
.+..+++.|++|+|||+.+++... .+++++|+.-. +-..|+..+...+|.... .+.+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~-------------~l~l~~e~~ 146 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGISTE-------------NLYLLAETN 146 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCcc-------------cEEEEccCc
Confidence 478999999999999999876653 23577887432 334567666666654321 1111111
Q ss_pred --eeccc--cCCccEEEEccccccC
Q 010534 150 --EMADV--VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 150 --e~~~~--l~~~~~iViDEah~~~ 170 (508)
++... -.+.++||||+++.+.
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11111 1478999999999874
No 236
>PRK14974 cell division protein FtsY; Provisional
Probab=95.47 E-value=0.02 Score=56.81 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=48.9
Q ss_pred CceEEEEccCCCchHHHH---HHHHHcC-CCEEEEc--chHH-HHHHHHHHHHhCCCceeee-ccccccccCCCcEEEEc
Q 010534 77 RKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCG--PLRL-LAWEVAKRLNKANVSCDLI-TGQEREEVDGAKHRAVT 148 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~---~~~l~~~-~~~i~l~--P~r~-La~q~~~~l~~~g~~~~~~-~g~~~~~~~~~~~iv~T 148 (508)
...++++|++|+|||+.+ ...+.+. .+++++. +.|. ...|+......+|+++... +|.... .+ .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~-----~v---~ 211 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPA-----AV---A 211 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHH-----HH---H
Confidence 578999999999999974 2334444 3555552 2344 4456555566677765321 111000 00 0
Q ss_pred ceecc--ccCCccEEEEccccccC
Q 010534 149 VEMAD--VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 149 ~e~~~--~l~~~~~iViDEah~~~ 170 (508)
.+.+. ...++++|+||.++...
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccC
Confidence 01111 12568999999999875
No 237
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.014 Score=60.63 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+++||.|+|||+.|.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 35 PQSILLVGASGVGKTTCAR 53 (491)
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3578999999999999863
No 238
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.39 E-value=0.092 Score=47.06 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=23.8
Q ss_pred CceEEEEccCCCchHHHHHHHHH----cCCCEEEEcch
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPL 110 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~ 110 (508)
++..++.||.+||||+..++.+. .+.+++++-|.
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~ 38 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPA 38 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence 35678999999999999876653 24456666663
No 239
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.013 Score=60.43 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=16.9
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
+.+++.||.|+|||+.|....
T Consensus 41 ha~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447999999999999974443
No 240
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.30 E-value=0.02 Score=54.14 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=41.7
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceeccccC
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVS 156 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l~ 156 (508)
=.++++.||+|.|||+.|.... +++|.++....|..-.... . -..++..+.
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA-----------------------~Emgvn~k~tsGp~leK~g--D----laaiLt~Le 102 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIA-----------------------NELGVNLKITSGPALEKPG--D----LAAILTNLE 102 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHH-----------------------HHhcCCeEecccccccChh--h----HHHHHhcCC
Confidence 3689999999999998653322 1446666555443221100 0 013445578
Q ss_pred CccEEEEccccccC
Q 010534 157 DYDCAVIDEIQMLG 170 (508)
Q Consensus 157 ~~~~iViDEah~~~ 170 (508)
.-|++.|||+|.+.
T Consensus 103 ~~DVLFIDEIHrl~ 116 (332)
T COG2255 103 EGDVLFIDEIHRLS 116 (332)
T ss_pred cCCeEEEehhhhcC
Confidence 88999999999985
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.22 E-value=0.04 Score=49.58 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=43.4
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
+++++++.||+|+|||+.|. ..+.+.+..++.++...|...+.... +... ..+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~-----------~~~~-----------~~~~~ 103 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSR-----------SDGS-----------YEELL 103 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCH-----------CCTT-----------HCHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccc-----------cccc-----------hhhhc
Confidence 47899999999999999963 33444555455566666665543210 0000 11344
Q ss_pred cccCCccEEEEcccccc
Q 010534 153 DVVSDYDCAVIDEIQML 169 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~ 169 (508)
..+.+++++||||.=..
T Consensus 104 ~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 104 KRLKRVDLLILDDLGYE 120 (178)
T ss_dssp HHHHTSSCEEEETCTSS
T ss_pred CccccccEeccccccee
Confidence 56788999999998543
No 242
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.22 E-value=0.094 Score=44.09 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=15.8
Q ss_pred EEEEccCCCchHHHHHHHHH
Q 010534 80 ILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l~ 99 (508)
+++.||.|+|||+.+-....
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 58999999999998644443
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.037 Score=55.26 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=45.5
Q ss_pred CCceEEEEccCCCchHHHHH----HHHHcCCCEEEE--cchHHHH-HHHHHHHHhCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL----SRLESSSSGIYC--GPLRLLA-WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~----~~l~~~~~~i~l--~P~r~La-~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
.++.++++||||+|||+.+. .....+.++.++ =|.|.-| .|+.......|+++..... ... +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~d--p~d------L--- 273 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATS--PAE------L--- 273 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCC--HHH------H---
Confidence 47899999999999999852 222334455444 3556544 4444444445655432110 000 0
Q ss_pred ceeccc---cCCccEEEEcccccc
Q 010534 149 VEMADV---VSDYDCAVIDEIQML 169 (508)
Q Consensus 149 ~e~~~~---l~~~~~iViDEah~~ 169 (508)
.+.+.. ...+++|+||=+=..
T Consensus 274 ~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCC
Confidence 011111 246899999988554
No 244
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.16 E-value=0.035 Score=57.92 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=43.8
Q ss_pred ceEEEEccCCCchHHHHH---HHHHcC--CCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLESS--SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~~~--~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
+.+++.||+|+|||+.+- ..+.+. +..++.++...+..+....+... ...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~----------------------~~~~~~ 206 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNN----------------------TMEEFK 206 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcC----------------------cHHHHH
Confidence 468999999999999852 223332 23343445556666555444320 001222
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
..+.+++++||||+|.+..
T Consensus 207 ~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 207 EKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHhcCCEEEEehhhhhcC
Confidence 3445788999999999853
No 245
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.15 E-value=0.02 Score=49.07 Aligned_cols=16 Identities=50% Similarity=0.746 Sum_probs=14.5
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
++++.||+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999986
No 246
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.12 E-value=0.071 Score=58.96 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=77.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcC-------CCeEEEEcCCCCHHHHHHHHHHhcCC--CCCeeEEEec--ccccccc
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRG-------KHLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVAS--DAIGMGL 305 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~-------~~~v~~lhg~l~~~~R~~~~~~f~~~--~g~~~ilVaT--~~~~~Gi 305 (508)
.+|.++||| |....+.+.+.+.+.+ ...+.. =+. ...++..+++.|++. .+.--||+|+ ..+.+||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 478888888 7888888888776532 112222 121 124667899999651 1334599999 8899999
Q ss_pred cc-c--ccEEEEcccccccCc------------------cc-cc---CChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 306 NL-N--ISRIIFSTMKKFDGV------------------EL-RD---LTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 306 di-p--v~~VI~~~~~~~d~~------------------~~-~p---~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
|+ + .+.||..++|...+. +. .+ .......|-+||+=|... ..|.++.+...
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~--D~G~iillD~R 674 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD--DYGSIVLLDKR 674 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC--ceEEEEEEehh
Confidence 99 3 889999998762221 00 01 123567899999999986 45777766543
No 247
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.12 E-value=0.048 Score=50.51 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=33.6
Q ss_pred CCceEEEEccCCCchHHHHHHH---HHcCC-CEE-EEcchHHHHHHHHHHHHh
Q 010534 76 VRKVILHVGPTNSGKTHQALSR---LESSS-SGI-YCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~---l~~~~-~~i-~l~P~r~La~q~~~~l~~ 123 (508)
.+++.+...-+|.|||.++... ++.++ +-+ +++| ++|..|.+..+..
T Consensus 40 ~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 40 SGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRS 91 (229)
T ss_pred CCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHH
Confidence 4688999999999999996433 34444 433 4467 5688888887763
No 248
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.046 Score=56.95 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=45.8
Q ss_pred CCceEEEEccCCCchHHHHHHH----HHcC--CCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSR----LESS--SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~----l~~~--~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
.++.+.++||||+|||+.+... ...+ +++.++ =+.|..+.++..... .+|+.+........
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~---------- 418 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES---------- 418 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH----------
Confidence 4789999999999999995322 2222 344443 244655544443332 33443322110000
Q ss_pred EcceeccccCCccEEEEcccccc
Q 010534 147 VTVEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (508)
-...+..+.++++|+||.+-..
T Consensus 419 -L~~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 419 -LLDLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred -HHHHHHHhccCCEEEecCCCcc
Confidence 0022334567999999999664
No 249
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.05 E-value=0.034 Score=52.50 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=35.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.+..+++.|++|+|||+.+.+.+. ++.+++|+.= .+-..++.+++..+|...
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQMESVKIDI 79 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHCCCCh
Confidence 378999999999999999876653 3456666622 233345666666666543
No 250
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.01 E-value=0.027 Score=57.76 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=25.9
Q ss_pred CCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH
Q 010534 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+.+. .+-.+....+.-+++.||||||||+.....+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L 279 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAAL 279 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 44444 5555555678899999999999999854443
No 251
>PRK05642 DNA replication initiation factor; Validated
Probab=94.94 E-value=0.039 Score=52.07 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=37.8
Q ss_pred ceEEEEccCCCchHHHHHHH---HH-cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceecc
Q 010534 78 KVILHVGPTNSGKTHQALSR---LE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~---l~-~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (508)
..+++.||+|+|||+.+... +. .+.+++|+ +...+.... .+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~-~~~~~~~~~-------------------------------~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL-PLAELLDRG-------------------------------PELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe-eHHHHHhhh-------------------------------HHHHH
Confidence 56889999999999984322 22 23455554 333333210 12233
Q ss_pred ccCCccEEEEccccccC
Q 010534 154 VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 154 ~l~~~~~iViDEah~~~ 170 (508)
.+.+++++|||++|...
T Consensus 94 ~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 94 NLEQYELVCLDDLDVIA 110 (234)
T ss_pred hhhhCCEEEEechhhhc
Confidence 44567899999999875
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.91 E-value=0.071 Score=46.60 Aligned_cols=30 Identities=40% Similarity=0.501 Sum_probs=21.3
Q ss_pred EEEEccCCCchHHHHHHHH----HcCCCEEEEcc
Q 010534 80 ILHVGPTNSGKTHQALSRL----ESSSSGIYCGP 109 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P 109 (508)
+++.||+|+|||+.+...+ ..++.++|+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 6899999999999864443 23456666633
No 253
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.89 E-value=0.032 Score=52.36 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----c-CCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~-~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|||||+.+++.+. + +.+++|+. +.+-..++.+.++.+|..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCc
Confidence 489999999999999999877663 4 55777773 233346666677776654
No 254
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.87 E-value=0.045 Score=51.81 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=37.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|||||+.+++.+.+ +.+++|+. +-+-..++.+++..+|..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 4899999999999999998776643 44677774 344556777777776654
No 255
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.026 Score=54.17 Aligned_cols=20 Identities=50% Similarity=0.620 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
+...|+++.||||||||+.|
T Consensus 95 L~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeeccEEEECCCCCcHHHHH
Confidence 45789999999999999976
No 256
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.022 Score=60.71 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=16.3
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.++++||.|+|||+.|.
T Consensus 37 ~HAyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIAR 55 (702)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567999999999999974
No 257
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.80 E-value=0.022 Score=56.78 Aligned_cols=38 Identities=32% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHcCCCEEEEcchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLL 113 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~~~~~i~l~P~r~L 113 (508)
.+++++++||||||||+..- ..+....+.+.+-.+.+|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 68999999999999999842 223334566666666554
No 258
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.78 E-value=0.057 Score=59.85 Aligned_cols=91 Identities=18% Similarity=0.058 Sum_probs=56.3
Q ss_pred EEEEccCCCchHHHHH-HHHH---cCCCEEEEcchHHHHH----HHHHHHHhCCCceeeecccc----ccccCCCcEEEE
Q 010534 80 ILHVGPTNSGKTHQAL-SRLE---SSSSGIYCGPLRLLAW----EVAKRLNKANVSCDLITGQE----REEVDGAKHRAV 147 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~-~~l~---~~~~~i~l~P~r~La~----q~~~~l~~~g~~~~~~~g~~----~~~~~~~~~iv~ 147 (508)
-|....||-|||++|. ...+ .++.+-++...--||. ++..-+.-+|+.|+++..+. ++..-.+.++++
T Consensus 154 ~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~aY~~DItYg 233 (1025)
T PRK12900 154 KISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQYLCDITYG 233 (1025)
T ss_pred CccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHhCCCcceec
Confidence 3789999999999963 2222 2333333322233443 33333445699999886543 333346788899
Q ss_pred cceec--cc-------------cCCccEEEEccccccC
Q 010534 148 TVEMA--DV-------------VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 148 T~e~~--~~-------------l~~~~~iViDEah~~~ 170 (508)
|..-+ +. .+.+.+.||||+|.++
T Consensus 234 Tn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 234 TNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 87222 11 2779999999999875
No 259
>PRK04195 replication factor C large subunit; Provisional
Probab=94.77 E-value=0.06 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=20.0
Q ss_pred CceEEEEccCCCchHHHHHHHHHcC
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
.+.+++.||+|+|||+.+-....+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999875555443
No 260
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.74 E-value=0.049 Score=56.00 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=41.8
Q ss_pred ceEEEEccCCCchHHHHH---HHHHcC---CCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~~~---~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
..+++.||+|+|||+.+. ..+.+. .+++|+ +...+..+....+..- . ..+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~~~~~~~~~~---------~-------------~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTNDFVNALRNN---------K-------------MEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHHHHHHHHHcC---------C-------------HHHH
Confidence 468899999999999852 223322 345555 4444554444433210 0 0112
Q ss_pred ccccCCccEEEEccccccCC
Q 010534 152 ADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (508)
...+.+.+++||||+|.+..
T Consensus 194 ~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 194 KEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHhCCEEEEehhhhhcC
Confidence 23345678999999998753
No 261
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.74 E-value=0.051 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=18.0
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+++.||+|+|||+.+....
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4679999999999999875443
No 262
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.73 E-value=0.089 Score=50.46 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE---cchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC---GPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l---~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..++|.|++|+|||+.+++.+. ++.+++|+ .|...+..++..+...+|..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 488999999999999999877664 34578888 34455555555555555543
No 263
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.73 E-value=0.021 Score=60.09 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.9
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
++..++.||.|+|||+.|.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~ 56 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISR 56 (509)
T ss_pred CeeEEEECCCCCCHHHHHH
Confidence 3457899999999999973
No 264
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.02 Score=57.90 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=16.8
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
+.+++.||.|+|||+.+....
T Consensus 39 h~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 456899999999999974433
No 265
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.023 Score=61.43 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+-+|++||.|+|||+.+..
T Consensus 38 ~HAyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34568999999999998643
No 266
>PLN03025 replication factor C subunit; Provisional
Probab=94.68 E-value=0.2 Score=49.65 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.7
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
..++++.||+|+|||+.+..
T Consensus 34 ~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35689999999999998643
No 267
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.66 E-value=0.037 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.6
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
...+++.||+|+|||+.+-....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999755543
No 268
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.61 E-value=0.11 Score=48.58 Aligned_cols=71 Identities=25% Similarity=0.374 Sum_probs=43.9
Q ss_pred ceEEEEccCCCchHHHH---HHHHH---cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 78 KVILHVGPTNSGKTHQA---LSRLE---SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~---~~~l~---~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
..+++.||+|+|||... ...+. .+.+++|+ +-..........+... . +.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~-~~~~f~~~~~~~~~~~---------~-------------~~~~ 91 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL-SAEEFIREFADALRDG---------E-------------IEEF 91 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE-EHHHHHHHHHHHHHTT---------S-------------HHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceee-cHHHHHHHHHHHHHcc---------c-------------chhh
Confidence 35899999999999963 12222 23344544 4445555555555431 0 1133
Q ss_pred ccccCCccEEEEccccccCC
Q 010534 152 ADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (508)
.+.+..+++++||.+|.+..
T Consensus 92 ~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 92 KDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HHHHCTSSEEEEETGGGGTT
T ss_pred hhhhhcCCEEEEecchhhcC
Confidence 34567899999999999874
No 269
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.60 E-value=0.06 Score=54.46 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.5
Q ss_pred cCCceEEEEccCCCchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~ 95 (508)
.++.|++..||+|+|||+.|.
T Consensus 207 e~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHH
Confidence 368999999999999998863
No 270
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.59 E-value=0.11 Score=51.37 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=20.1
Q ss_pred ceEEEEccCCCchHHHHHHHHHc-CCCEEEEcc
Q 010534 78 KVILHVGPTNSGKTHQALSRLES-SSSGIYCGP 109 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P 109 (508)
+.+++.||+|+|||+.+...... +...+++.+
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 45556899999999986444332 233445444
No 271
>PHA00729 NTP-binding motif containing protein
Probab=94.59 E-value=0.14 Score=47.58 Aligned_cols=21 Identities=33% Similarity=0.262 Sum_probs=17.5
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
-.++++.|++|+|||+.|...
T Consensus 17 f~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 457999999999999987543
No 272
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.54 E-value=0.11 Score=61.24 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=62.8
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHH---Hc--CCCEEEEcchHHHHHHHHHHHHhCCCceee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL---ES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l---~~--~~~~i~l~P~r~La~q~~~~l~~~g~~~~~ 130 (508)
..+++-|. ++..+....++.++|.|..|+|||+.. +..+ .+ +..++.++||--.+..+. +.|+++.-
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e~Gi~A~T 909 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----SAGVDAQT 909 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----HhCchHhh
Confidence 36888888 888876556799999999999999993 3332 22 235677899988877664 33555433
Q ss_pred eccccccccCCCcEEEEcceeccccCCccEEEEccccccCC
Q 010534 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~ 171 (508)
++.-....... .... -......+++||||+=|+..
T Consensus 910 IasfL~~~~~~-----~~~~-~~~~~~~~llIVDEASMV~~ 944 (1623)
T PRK14712 910 LASFLHDTQLQ-----QRSG-ETPDFSNTLFLLDESSMVGN 944 (1623)
T ss_pred HHHHhccccch-----hhcc-cCCCCCCcEEEEEccccccH
Confidence 22211110000 0000 01123468999999999863
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.12 Score=44.74 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=16.0
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
-.+.+.|++|+|||+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~k 24 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLK 24 (179)
T ss_pred eEEEEeCCCCccHHHHHHH
Confidence 4688999999999998643
No 274
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.49 E-value=0.072 Score=58.15 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=31.3
Q ss_pred CceEEEEccCCCchHHHHHH----HHHcCC--CEEEE-c-chHHHHHHHHHHH-HhCCCceee
Q 010534 77 RKVILHVGPTNSGKTHQALS----RLESSS--SGIYC-G-PLRLLAWEVAKRL-NKANVSCDL 130 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~----~l~~~~--~~i~l-~-P~r~La~q~~~~l-~~~g~~~~~ 130 (508)
++.+.++||||+|||+.+.. .....+ ++.++ . +.|.-+.++.+.+ ..+|+++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~ 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHA 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccc
Confidence 67899999999999999522 212332 44333 2 3454444444444 345766543
No 275
>PHA00350 putative assembly protein
Probab=94.48 E-value=0.29 Score=49.54 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=21.5
Q ss_pred eEEEEccCCCchHHHHHHH-H---HcCCCEEEE
Q 010534 79 VILHVGPTNSGKTHQALSR-L---ESSSSGIYC 107 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~-l---~~~~~~i~l 107 (508)
..++.|..|||||+-++.. + ++.|+.+|.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999998653 2 345676664
No 276
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.44 E-value=0.012 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=17.6
Q ss_pred eEEEEccCCCchHHHHHHH-HH---cCCCEEEE
Q 010534 79 VILHVGPTNSGKTHQALSR-LE---SSSSGIYC 107 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~-l~---~~~~~i~l 107 (508)
..+++|..|||||+-+... +. +.++.||.
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t 34 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT 34 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE
Confidence 4689999999999998666 43 34555554
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.41 E-value=0.084 Score=54.35 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=46.1
Q ss_pred CceEEEEccCCCchHHHHH---HHHHcC-CCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQAL---SRLESS-SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~---~~l~~~-~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (508)
..+++++|++|+|||+.+. ..+.+. .+++++ =+.|..+.++...+. ..|+++...... . + +.- ...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~-~----d-~~~-i~~ 167 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN-K----D-AVE-IAK 167 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc-c----C-HHH-HHH
Confidence 5688999999999999962 233333 455444 334555555444443 456654221100 0 0 000 001
Q ss_pred eeccccCCccEEEEcccccc
Q 010534 150 EMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 150 e~~~~l~~~~~iViDEah~~ 169 (508)
+.+......++||||.+-..
T Consensus 168 ~al~~~~~~DvVIIDTAGr~ 187 (437)
T PRK00771 168 EGLEKFKKADVIIVDTAGRH 187 (437)
T ss_pred HHHHHhhcCCEEEEECCCcc
Confidence 22233345699999999544
No 278
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.35 E-value=0.13 Score=61.29 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=61.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH--H-HHHH---c--CCCEEEEcchHHHHHHHHHHHHhCCCceee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLE---S--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~--~-~~l~---~--~~~~i~l~P~r~La~q~~~~l~~~g~~~~~ 130 (508)
..+++.|. ++..+....++.++|.|..|+|||+.. + ..+. + +..++.++||--.|..+. +.|++..-
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~Gi~A~T 1041 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SAGVDAQT 1041 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hcCcchhh
Confidence 46888888 888876556789999999999999994 2 2221 2 235677899988776554 34655433
Q ss_pred eccccccccCCCcEEEEcceeccccCCccEEEEccccccC
Q 010534 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (508)
++.-...... .....-......+++||||+=|+.
T Consensus 1042 I~s~L~~~~~------~~~~~~~~~~~~~llIVDEaSMv~ 1075 (1747)
T PRK13709 1042 LASFLHDTQL------QQRSGETPDFSNTLFLLDESSMVG 1075 (1747)
T ss_pred HHHHhccccc------ccccccCCCCCCcEEEEEcccccc
Confidence 3221111000 000000111345899999999986
No 279
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.34 E-value=0.027 Score=51.65 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCCchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+-.++++.||+|+|||+.+.
T Consensus 46 gnmP~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CCCCceEeeCCCCCchhhHHH
Confidence 345789999999999999863
No 280
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.30 E-value=0.078 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=17.5
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
..++++.||+|+|||+.+....
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia 51 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIA 51 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3568999999999998875433
No 281
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.27 E-value=0.036 Score=59.11 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.5
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+-.|++||.|+|||+.+.
T Consensus 39 HA~LFtGP~GvGKTTLAr 56 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSR 56 (700)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457999999999999963
No 282
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.033 Score=61.82 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.5
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
++.+|++||.|+|||+.+..
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~ 56 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARI 56 (824)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35579999999999999743
No 283
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.15 E-value=0.033 Score=58.43 Aligned_cols=18 Identities=33% Similarity=0.235 Sum_probs=16.1
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+..++.||.|+|||+.|.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999999974
No 284
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.15 E-value=0.09 Score=54.52 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=42.9
Q ss_pred ceEEEEccCCCchHHHHH---HHHH-cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceecc
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~-~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (508)
+.+++.||+|+|||+.+. ..+. .+.+++|+. ...+..+....+.. +.. .+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~~~f~~~~~~~l~~---------~~~-------------~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-SELFTEHLVSAIRS---------GEM-------------QRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-HHHHHHHHHHHHhc---------chH-------------HHHHH
Confidence 468999999999999842 3333 345666654 34455544444321 000 01112
Q ss_pred ccCCccEEEEccccccCC
Q 010534 154 VVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 154 ~l~~~~~iViDEah~~~~ 171 (508)
.....++++|||+|.+..
T Consensus 199 ~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 199 FYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HcccCCEEEEcchhhhcC
Confidence 235689999999999863
No 285
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.037 Score=59.36 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..++.||.|+|||+.+..
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARI 57 (576)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35568999999999999743
No 286
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.09 E-value=0.047 Score=53.27 Aligned_cols=58 Identities=24% Similarity=0.172 Sum_probs=37.6
Q ss_pred CCCCCCccccchHHHhcCCceEEEEccCCCchHHHH---HHHHHcCCCEEEEcchHHHHHH
Q 010534 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWE 116 (508)
Q Consensus 59 ~~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~r~La~q 116 (508)
+..+++-+..+-...-..+.+++++|.||||||+.. ..++....++|.+--|.+|-.+
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccC
Confidence 455555555222222234679999999999999984 3334445688888888776433
No 287
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.08 E-value=0.14 Score=53.33 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=46.3
Q ss_pred CCceEEEEccCCCchHHHHHH----HHHcCC--CEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALS----RLESSS--SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~----~l~~~~--~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
+++++.++||||+|||+.+.. .....+ ++.++ =+.|.-+.++.+.+. .+|+++..........
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~-------- 326 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLR-------- 326 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHH--------
Confidence 467899999999999999632 222332 34333 455666666666654 3465443221110000
Q ss_pred EcceeccccCCccEEEEcccc
Q 010534 147 VTVEMADVVSDYDCAVIDEIQ 167 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah 167 (508)
..+..+.+.++++||.+=
T Consensus 327 ---~aL~~L~d~d~VLIDTaG 344 (484)
T PRK06995 327 ---LALSELRNKHIVLIDTIG 344 (484)
T ss_pred ---HHHHhccCCCeEEeCCCC
Confidence 112345667899999964
No 288
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.074 Score=53.56 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=18.7
Q ss_pred hHHHhcCCceEEEEccCCCchHHHH
Q 010534 70 PLARKKVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 70 ~~~~~~~~~~~iv~~pTGsGKT~~~ 94 (508)
|.++.....++++.|+||+|||.++
T Consensus 35 ~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 35 PALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHhcCCCCccEEEECCCCCCHhHHH
Confidence 3333344556999999999999985
No 289
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.06 E-value=0.16 Score=48.61 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=45.3
Q ss_pred HHHHHhcCCCCCeeEEEeccccccccccccc-EEEEcccccccCcccccCChhhHHhhhccCCCCCCC
Q 010534 280 RQATRFNDASSEFDVLVASDAIGMGLNLNIS-RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (508)
Q Consensus 280 ~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~-~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (508)
...+.|.+ |+.+|+|-|+++++|+.+-.+ .+-+... +..-.-.-|+|....+|..||+.|.+..
T Consensus 52 ~e~~~F~~--g~k~v~iis~AgstGiSlHAd~~~~nqr~-Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAIISDAGSTGISLHADRRVKNQRR-RVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhC--CCceEEEEecccccccchhccccCCCCCc-eEEEEeeCCCCHHHHHHHhccccccccc
Confidence 45678999 999999999999999999532 2221100 0000002278999999999999999984
No 290
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.06 E-value=0.03 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.0
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+.+..||.|+|||.+++.+-
T Consensus 56 ~lp~~LFyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFA 78 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHH
Confidence 46789999999999999975443
No 291
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.04 E-value=0.16 Score=61.94 Aligned_cols=99 Identities=17% Similarity=0.082 Sum_probs=62.8
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHH----Hc-CCCEEEEcchHHHHHHHHHHHHhCCCceee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL----ES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l----~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~ 130 (508)
..+++.|. ++..+....++.++|.|+.|+|||+.. ...+ .. +.+++.++||-..+.++. +.|++..-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~g~~a~T 1093 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SAGVQAQT 1093 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hcCCchHh
Confidence 46889998 888876666789999999999999986 1222 22 346777899987776664 34555332
Q ss_pred eccccccccCCCcEEEEcceeccccCCccEEEEccccccC
Q 010534 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (508)
+..-..... .- ..-......+++||||+=++.
T Consensus 1094 i~s~l~~~~----~~----~~~~~~~~~~v~ivDEasMv~ 1125 (1960)
T TIGR02760 1094 LDSFLTDIS----LY----RNSGGDFRNTLFILDESSMVS 1125 (1960)
T ss_pred HHHHhcCcc----cc----cccCCCCcccEEEEEcccccc
Confidence 221111000 00 000113467899999999986
No 292
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.00 E-value=0.056 Score=51.62 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=18.7
Q ss_pred HHhcCCceEEEEccCCCchHHHH
Q 010534 72 ARKKVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 72 ~~~~~~~~~iv~~pTGsGKT~~~ 94 (508)
+....+.-++|.||||||||+..
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HHhCCCceEEEeCCCCCcHHHHH
Confidence 33346788999999999999984
No 293
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.00 E-value=0.12 Score=53.69 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=44.3
Q ss_pred ceEEEEccCCCchHHHHH---HHHHc--CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~~--~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
+.+++.|++|+|||+.+. ..+.+ .+..++.++...+..++...+.... + . ..+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-------~--~-----------~~~~~ 201 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-------K--E-----------IEQFK 201 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-------h--H-----------HHHHH
Confidence 458899999999998742 22222 2233344555667766666554310 0 0 00122
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
.....++++||||+|.+..
T Consensus 202 ~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 202 NEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HHhccCCEEEEeccccccC
Confidence 3346789999999998863
No 294
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.98 E-value=0.042 Score=59.14 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=17.2
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
.+.+|+.||.|+|||+.+...
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 356899999999999997433
No 295
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.97 E-value=0.042 Score=53.07 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=25.1
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHcC-CCEEEEcchH
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCGPLR 111 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~~-~~~i~l~P~r 111 (508)
.+.+++++|+||||||+.. +..+... .+++++....
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 4899999999999999995 3333344 4555554433
No 296
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.95 E-value=0.23 Score=51.21 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.8
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+++.||+|+|||+.+-...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999875443
No 297
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.071 Score=56.99 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=16.0
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+++||.|+|||+.+-
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak 56 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAK 56 (559)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567889999999999963
No 298
>PRK05973 replicative DNA helicase; Provisional
Probab=93.92 E-value=0.08 Score=49.74 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=35.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..++|.|++|+|||+.+++.+. ++.+++|+.- -+-..|+.+++..+|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl-Ees~~~i~~R~~s~g~d 117 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL-EYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHHHHcCCC
Confidence 588999999999999999877664 3345667622 22246777777776644
No 299
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.88 E-value=0.029 Score=60.34 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.2
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+-.++.||.|+|||+.+.
T Consensus 39 hAyLf~Gp~GvGKTTlAr 56 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIAR 56 (647)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 336899999999999964
No 300
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.86 E-value=0.14 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.8
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
...++++.||+|+|||+.+-..
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v 75 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKV 75 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3467999999999999996433
No 301
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=0.055 Score=57.75 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.2
Q ss_pred ceEEEEccCCCchHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~ 97 (508)
+-.++.||.|+|||+.+...
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~l 55 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARIL 55 (584)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34689999999999997443
No 302
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.83 E-value=0.15 Score=53.09 Aligned_cols=82 Identities=17% Similarity=0.100 Sum_probs=51.4
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcc--
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (508)
.+..+++.|++|+|||+.+++.+. .+++++|+... +-..|+..+...+|.....+ .++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~~l------------~~~~e~~~ 159 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLPEPNL------------YVLSETNW 159 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCChHHe------------EEcCCCCH
Confidence 488999999999999999876643 23578888543 33467777776666432100 001000
Q ss_pred -eeccc--cCCccEEEEccccccC
Q 010534 150 -EMADV--VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 150 -e~~~~--l~~~~~iViDEah~~~ 170 (508)
++... -.+.+++|||.++.+.
T Consensus 160 ~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 160 EQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHHhcCCcEEEEecchhhc
Confidence 11111 1468999999999874
No 303
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.79 E-value=0.056 Score=53.30 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCceEEEEccCCCchHHHH--H-HHHH---cCCCEEEEcchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA--L-SRLE---SSSSGIYCGPLRLL 113 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~-~~l~---~~~~~i~l~P~r~L 113 (508)
.+++++++|+||||||+.. + ..+. .+.+.+.+-.+.+|
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 5789999999999999984 2 2231 23345555555554
No 304
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.045 Score=58.01 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.8
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
+..++.||.|+|||+.|..
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4568999999999999743
No 305
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.69 E-value=0.095 Score=55.04 Aligned_cols=55 Identities=27% Similarity=0.239 Sum_probs=43.2
Q ss_pred ceEEEEccCCCchHHHH--HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 78 KVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~--~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
.+++++||||||||..+ +..+...+..|+.=|--+|....+..+++.|.+|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 57999999999999884 33344456778889999999998888888777666553
No 306
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.68 E-value=0.089 Score=51.54 Aligned_cols=38 Identities=39% Similarity=0.434 Sum_probs=27.3
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHc---CCCEEEEcchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLES---SSSGIYCGPLRLL 113 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~---~~~~i~l~P~r~L 113 (508)
.+++++++|+||||||+.+ +..+.+ ..+++++--..++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 5789999999999999995 233332 3566777666665
No 307
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.65 E-value=0.079 Score=50.93 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=19.8
Q ss_pred cchHHHhcCCceEEEEccCCCchHHHH
Q 010534 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 68 ~~~~~~~~~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+....+..++++||||||||+..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 333333345678999999999999985
No 308
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.63 E-value=0.07 Score=54.48 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=42.0
Q ss_pred eEEEEccCCCchHHHH--HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 79 VILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~--~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
+++++||||||||..+ +..+...+..|++=|.-++....+...++.|.+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 4789999999999884 33343456778889999999888887777787777654
No 309
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.62 E-value=0.092 Score=46.75 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=35.9
Q ss_pred EEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHh
Q 010534 80 ILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
++|.|++|||||..+.+.+.. +.+++|+.-.+.+-.++.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999999888766 45789997777777777777664
No 310
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=0.14 Score=54.78 Aligned_cols=45 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred CCceEEEEccCCCchHHHH--HHHHHcCC-CEEEE--cchHHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLESSS-SGIYC--GPLRLLAWEVAKR 120 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~~~~-~~i~l--~P~r~La~q~~~~ 120 (508)
.++++.++||.|||||+++ ++.+.+-. ..|.+ +|.+.+-....++
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 5899999999999999997 44454422 22334 8888876666553
No 311
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.043 Score=57.21 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=15.9
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
+.+++.||+|+|||+.|..
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4479999999999999743
No 312
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=93.59 E-value=0.33 Score=46.85 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=63.3
Q ss_pred CCceEEEEccCCCchHHHHHHHH----Hc-CCCEEEEcchHHHHHHHHHHHHhCCCce---eeecccc--ccccCCCcEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRLLAWEVAKRLNKANVSC---DLITGQE--REEVDGAKHR 145 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~---~~~~g~~--~~~~~~~~~i 145 (508)
.+.-.++--.||.||--++.-.| +. .++.|++...-.|-.+..+.++..|... ..+..-. ....-...++
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCcc
Confidence 46778888899999998853333 33 3469999999999999999999765432 2111110 1111245678
Q ss_pred EEcceec------------------ccc--CCccEEEEccccccCCC
Q 010534 146 AVTVEMA------------------DVV--SDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 146 v~T~e~~------------------~~l--~~~~~iViDEah~~~~~ 172 (508)
++|+-.+ +|+ ..-.+||+||||.....
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 8886221 222 33569999999998654
No 313
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.56 E-value=0.048 Score=60.15 Aligned_cols=20 Identities=30% Similarity=0.255 Sum_probs=16.2
Q ss_pred ceEEEEccCCCchHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~ 97 (508)
+-.|++||.|+|||+.+...
T Consensus 39 HAyLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLF 58 (944)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 44689999999999997433
No 314
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.56 E-value=0.05 Score=54.04 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHcCCCEEEEcchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLL 113 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~r~L 113 (508)
.+++++++|+||||||+.. +..+....+++.+--+.++
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 5899999999999999984 2333334555555444443
No 315
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=93.53 E-value=0.21 Score=53.52 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=38.3
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~ 122 (508)
+.-..++|.|--|+|||+.. +.+.+.-+++++.||+..|.++...|+
T Consensus 69 LPFs~~~itG~AGsGKst~i-~~l~~~l~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 69 LPFSVYLITGTAGAGKSTSI-QTLNENLDCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred CCeEEEEEecCCCCChHHHH-HHHHHhcCEEEEcchHHHHHhhhcccc
Confidence 34678999999999999974 444444589999999999999988665
No 316
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.14 Score=52.50 Aligned_cols=59 Identities=27% Similarity=0.336 Sum_probs=36.5
Q ss_pred CCccEEEEccccccCCCCcChH---------HHHHHhccc-----CCceEEEccCCcchHHHHHHhHcCCcEEEE
Q 010534 156 SDYDCAVIDEIQMLGCKTRGFS---------FTRALLGIC-----ANELHLCGDPAAVPLIQQILQVTGDDVKVQ 216 (508)
Q Consensus 156 ~~~~~iViDEah~~~~~~rg~~---------~~~~ll~l~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~ 216 (508)
+.+-+||+||++.+-- +||.. ..+.|+.-. -..+.++|++.-.+++.+-+-.+|+ ++|+
T Consensus 323 SgLHIIIFDEiDAICK-qRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGR-lEVq 395 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICK-QRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGR-LEVQ 395 (744)
T ss_pred CCceEEEehhhHHHHH-hcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCc-eEEE
Confidence 5678899999998742 34432 233333321 1467889998887877765555555 4443
No 317
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.68 Score=47.61 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=66.3
Q ss_pred EEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccc--cccccc-cccEEEEcccc
Q 010534 242 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRIIFSTMK 318 (508)
Q Consensus 242 ~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~--~~Gidi-pv~~VI~~~~~ 318 (508)
.|++-|.=+-..+..++++... ....+|-=.+...-.+.-..|-. |...||+-|.=+ =+-.+| +|+.||+|.++
T Consensus 556 LiyIPSYfDFVRvRNy~K~e~i-~F~~i~EYssk~~vsRAR~lF~q--gr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 556 LIYIPSYFDFVRVRNYMKKEEI-SFVMINEYSSKSKVSRARELFFQ--GRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred EEEecchhhHHHHHHHhhhhhc-chHHHhhhhhHhhhhHHHHHHHh--cCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 3444476666677777776543 33333322222222344556777 888999999733 356778 69999999986
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCC-CCcEEEEEecCC
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSE 358 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~-~~~G~~~~~~~~ 358 (508)
. .|.=.++++.+.||+.-.|.. ...-.|.+++..
T Consensus 633 ~------~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 633 N------NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred C------CcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 3 244578888999888655532 123456555543
No 318
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.47 E-value=0.099 Score=57.35 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=42.4
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCCchHHHHH---HHHHc-C----CCEEEEcchHHHHHHHHHHHHh
Q 010534 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~---~~l~~-~----~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+++.|. ++.. ....++|.|..|||||.+.. .++.+ . .+++++..|+..|.++.+|+..
T Consensus 3 Ln~~Q~~av~~----~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 3 LNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 555565 4432 25668899999999999963 33332 2 2578899999999999999974
No 319
>PRK10436 hypothetical protein; Provisional
Probab=93.47 E-value=0.081 Score=54.93 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.1
Q ss_pred chHHHhcCCceEEEEccCCCchHHHH
Q 010534 69 YPLARKKVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 69 ~~~~~~~~~~~~iv~~pTGsGKT~~~ 94 (508)
+..+....+..++++||||||||+..
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHH
Confidence 43333346788999999999999975
No 320
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.45 E-value=0.081 Score=58.63 Aligned_cols=61 Identities=20% Similarity=0.065 Sum_probs=44.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH---HHHHcC-----CCEEEEcchHHHHHHHHHHHHhC
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLESS-----SSGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~---~~l~~~-----~~~i~l~P~r~La~q~~~~l~~~ 124 (508)
..|++.|. ++.. ....++|.|..|||||.+.. ..|.+. .+++++..|+..|.++.+|+.++
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA----PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 45677776 4432 25678999999999999963 333332 25688999999999999999753
No 321
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=93.37 E-value=0.089 Score=51.23 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=23.4
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGP 109 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P 109 (508)
++.++|.||||||||..++......+ -|+-+-
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~-eIIsaD 35 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKA-EIINVD 35 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-cEEecc
Confidence 56899999999999998877665532 344344
No 322
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.31 E-value=0.073 Score=55.80 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.4
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
+...+..++||||||++..
T Consensus 115 P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cccCCeeEEEEEChhhcCH
Confidence 3446789999999999964
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.31 E-value=0.15 Score=47.92 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANV 126 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~ 126 (508)
.+..+++.|++|+|||+.+.+.+. ++.+++|+. +-+-..+..+.+..+|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~-~e~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS-TQLTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-CCCCHHHHHHHHHHhCC
Confidence 478999999999999999766543 345777775 22233444555555554
No 324
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.30 E-value=0.35 Score=53.19 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.9
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
..++++.||+|+|||+.+-.
T Consensus 52 ~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45789999999999998643
No 325
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.24 E-value=0.17 Score=55.12 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=39.6
Q ss_pred eEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhC
Q 010534 79 VILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~ 124 (508)
..++.|.||||||+.+...+.+ +..+++++|...+|.|++..|+.+
T Consensus 31 ~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred cEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 5569999999999998776665 457799999999999999999865
No 326
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.17 E-value=0.066 Score=44.54 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=15.1
Q ss_pred eEEEEccCCCchHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALS 96 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~ 96 (508)
.++|.|++|||||+.+-.
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999997643
No 327
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.16 E-value=0.12 Score=56.62 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=45.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH---HHc-C----CCEEEEcchHHHHHHHHHHHHh
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~---l~~-~----~~~i~l~P~r~La~q~~~~l~~ 123 (508)
..+++.|. ++- ....+++|.|..|||||+++... +.. + .++++++.++.+|.++.+|+.+
T Consensus 195 ~~L~~~Q~~av~----~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVV----NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHh----CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 56777776 543 22456799999999999996433 332 2 3678999999999999999874
No 328
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.16 E-value=0.087 Score=57.25 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.9
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+++||.|+|||+.|.
T Consensus 40 ~HAYLF~GP~GtGKTt~Ar 58 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAK 58 (725)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457899999999999974
No 329
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.11 E-value=0.13 Score=62.79 Aligned_cols=60 Identities=17% Similarity=0.082 Sum_probs=45.1
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHH--H-HHHHc-CCCEEEEcchHHHHHHHHHH
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLES-SSSGIYCGPLRLLAWEVAKR 120 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~--~-~~l~~-~~~~i~l~P~r~La~q~~~~ 120 (508)
.+++.|. ++..+....++..+|.|+.|+|||+.. + ..... +.+++.++|+.-.+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 4777788 877776666799999999999999994 3 33333 34677889998877776654
No 330
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.09 E-value=0.11 Score=53.18 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.1
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
+.+++.||.|+|||+.|..
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4588999999999999743
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.07 E-value=0.11 Score=55.90 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=16.8
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
.+.+++.||.|+|||+.+...
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 355699999999999997433
No 332
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.00 E-value=0.096 Score=47.48 Aligned_cols=20 Identities=50% Similarity=0.519 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+.+++++||||||||+..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 23 EARKNILISGGTGSGKTTLL 42 (186)
T ss_pred hCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999974
No 333
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.97 E-value=0.11 Score=55.88 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.4
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+-.+++||.|+|||+.+.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr 56 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSR 56 (618)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456899999999999974
No 334
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.97 E-value=0.069 Score=57.30 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.3
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.+++.||.|+|||+.|.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar 64 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTAR 64 (598)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999999974
No 335
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.96 E-value=0.16 Score=48.73 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc---CCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~---~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.++.++|.|++|||||+-+++++.+ .+..++.+-+.+...++.+.+..+|...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDL 77 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCH
Confidence 4899999999999999999888754 3333444445556666666666665443
No 336
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.95 E-value=0.16 Score=49.61 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=43.2
Q ss_pred CCCCCCccccchHHHhcCCceEEEEccCCCchHHHH----HHHHHcC--CCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESS--SSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 59 ~~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~----~~~l~~~--~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
+.-.++-|..++.+. .++..++-.||-|+|||+.+ ..++..+ .++|..-|- =+.|.+.+.+-
T Consensus 126 I~~kt~~Q~~y~eai-~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPa-----------VEAGEklGfLP 193 (348)
T COG1702 126 IIPKTPGQNMYPEAI-EEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPA-----------VEAGEKLGFLP 193 (348)
T ss_pred eEecChhHHHHHHHH-HhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcc-----------hhcCcccCcCC
Confidence 566777788777664 46788888999999999985 3344333 234444661 14466677777
Q ss_pred cccc
Q 010534 133 GQER 136 (508)
Q Consensus 133 g~~~ 136 (508)
|+.+
T Consensus 194 Gdl~ 197 (348)
T COG1702 194 GDLR 197 (348)
T ss_pred Cchh
Confidence 7654
No 337
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.95 E-value=0.11 Score=57.68 Aligned_cols=61 Identities=18% Similarity=0.072 Sum_probs=45.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH---HHHc-C----CCEEEEcchHHHHHHHHHHHHhC
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~---~l~~-~----~~~i~l~P~r~La~q~~~~l~~~ 124 (508)
..|++.|. ++.. ....++|.|..|||||.+... +|.+ . .+++++.-|+..|.++.+|+.++
T Consensus 8 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA----PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 45677776 4432 256789999999999999633 3332 2 36789999999999999999753
No 338
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.95 E-value=0.19 Score=52.11 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=41.3
Q ss_pred ceEEEEccCCCchHHHHH---HHHHcC---CCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~~~---~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
+.+++.||+|+|||+.+. ..+.+. .+++|+ +...+..+....+..- .. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi-~~~~f~~~~~~~~~~~---------~~-------------~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI-TSEKFLNDLVDSMKEG---------KL-------------NEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHhcc---------cH-------------HHH
Confidence 468999999999999853 333332 245555 4444555554444321 00 011
Q ss_pred cccc-CCccEEEEccccccCC
Q 010534 152 ADVV-SDYDCAVIDEIQMLGC 171 (508)
Q Consensus 152 ~~~l-~~~~~iViDEah~~~~ 171 (508)
.... .+.++++|||+|.+.+
T Consensus 188 ~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 188 REKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHHhcCCEEEEechhhhcC
Confidence 1111 2578999999998754
No 339
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.74 E-value=0.14 Score=45.74 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=32.8
Q ss_pred eEEEEccCCCchHHHHHHHHHcC-CCEEEEcchHHHHHHHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~~-~~~i~l~P~r~La~q~~~~l~ 122 (508)
.++|.|++|||||+.+.....+. ...+|+......-.++.+++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHH
Confidence 58999999999999998777664 456777655555556666664
No 340
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.70 E-value=0.096 Score=55.44 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.8
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
+.+++.||.|+|||+.|..
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~ 57 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRL 57 (546)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3478999999999999743
No 341
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.68 E-value=0.63 Score=41.37 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEcc--CC-cchHHHHHHhHcC
Q 010534 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD--PA-AVPLIQQILQVTG 210 (508)
Q Consensus 156 ~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~--~~-~~~~~~~l~~~~~ 210 (508)
...+++||||+=.|-.. +..|...+..+......+++. .. ..++++.+....+
T Consensus 94 ~~~~liviDEIG~mEl~--~~~F~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~~~ 149 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELK--SPGFREAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRRPD 149 (168)
T ss_dssp HCCHEEEE---STTCCC---CHHHHHHHHHHCTTSEEEEE--SS--SCCHHHHHTTTT
T ss_pred CCCCEEEEeccchhhhc--CHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhCCC
Confidence 57899999999888654 455555555444333333332 12 3456666655433
No 342
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.67 E-value=0.033 Score=57.93 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.6
Q ss_pred ccCCccEEEEccccccCC
Q 010534 154 VVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 154 ~l~~~~~iViDEah~~~~ 171 (508)
.-.++++.||||+||++-
T Consensus 116 ~~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSK 133 (515)
T ss_pred ccccceEEEEecHHhhhH
Confidence 348899999999999973
No 343
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.64 E-value=0.18 Score=53.07 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|+|||+.+++.+.+ +.+++|+. .-+-..|+..+...+|+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGID 316 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 5899999999999999998887753 34677764 455567788888877754
No 344
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.63 E-value=1.2 Score=48.00 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=37.5
Q ss_pred cCCceEEEEccCCCchHHHH---HHHHH--cCCCEEEEcchHHHHHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA---LSRLE--SSSSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~---~~~l~--~~~~~i~l~P~r~La~q~~~~l~ 122 (508)
.+.+-.++.+|=|.|||.+. +.++. .+.+++|.+|...-+.++.+++.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHH
Confidence 35788899999999999994 22222 35578899999999999888766
No 345
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.61 E-value=0.21 Score=53.64 Aligned_cols=57 Identities=16% Similarity=-0.131 Sum_probs=46.5
Q ss_pred CCceEEEEccCCCchHHHH--HHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
..+++++.||||||||..+ +..+.-.+.+|++=|--++....+...++.|.+|.++.
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfd 215 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWE 215 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 3578999999999999974 44444467888999999999999988888888877654
No 346
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.58 E-value=1.4 Score=47.21 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=62.5
Q ss_pred CCceEEEEccCCCchHHHHH---HHHH---cCCCEEEEcchHHHHHHHHHHHHhC------CCceeeeccccc--cccCC
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLE---SSSSGIYCGPLRLLAWEVAKRLNKA------NVSCDLITGQER--EEVDG 141 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~---~~~~~i~l~P~r~La~q~~~~l~~~------g~~~~~~~g~~~--~~~~~ 141 (508)
+.+-.++..|==.|||.... ..+. .+-+++|.+|.+..+..+++++... +..+..+.|+.. ....+
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~nG 332 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPDG 332 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecCC
Confidence 46888899999999999742 2122 4567899999999999999888742 222333445322 11112
Q ss_pred --CcEEEEcceecc--ccCCccEEEEccccccCCC
Q 010534 142 --AKHRAVTVEMAD--VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 142 --~~~iv~T~e~~~--~l~~~~~iViDEah~~~~~ 172 (508)
+.+.+.+..--. .-..++++|||||+.+.+.
T Consensus 333 ~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 333 SRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred CccEEEEEeccCCCCccCCcccEEEEechhhCCHH
Confidence 234444332222 1257999999999999754
No 347
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.56 E-value=0.19 Score=53.52 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=43.3
Q ss_pred ceEEEEccCCCchHHHHH---HHHHc--CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 78 KVILHVGPTNSGKTHQAL---SRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~---~~l~~--~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
+.+++.|++|+|||+.+- ..+.+ .+..++.++...++.+....+... .. .+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~---------~~-------------~~f~ 372 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDG---------KG-------------DSFR 372 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhc---------cH-------------HHHH
Confidence 348999999999999842 22322 133344455566666665544321 00 0111
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
..+.+++++|||++|.+..
T Consensus 373 ~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 373 RRYREMDILLVDDIQFLED 391 (617)
T ss_pred HHhhcCCEEEEehhccccC
Confidence 2345689999999999864
No 348
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.094 Score=56.65 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+.+++.||.|+|||+.|..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred CceEEEECCCCCChHHHHHH
Confidence 35679999999999999743
No 349
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=92.43 E-value=0.14 Score=46.75 Aligned_cols=32 Identities=34% Similarity=0.450 Sum_probs=21.3
Q ss_pred ceEEEEccCCCchHHHHHHHHHcCCCEEEEcc
Q 010534 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGP 109 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P 109 (508)
+..++.||||+|||..++..-.+.+-.++..-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~D 33 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLD 33 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEec
Confidence 46789999999999988776665555555443
No 350
>PF12846 AAA_10: AAA-like domain
Probab=92.43 E-value=0.16 Score=49.53 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=25.3
Q ss_pred CceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLA 114 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La 114 (508)
|.++++.|+||||||+.+...+ ..+..++++=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHH
Confidence 5689999999999999864332 3344556665544333
No 351
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.42 E-value=0.034 Score=49.57 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=38.2
Q ss_pred EEEccCCCchHHHHHH---HHHcC--CCEEEEcchHHHHHHHHHHHHh----CCCceeee--ccc-cccccCCCcEEEEc
Q 010534 81 LHVGPTNSGKTHQALS---RLESS--SSGIYCGPLRLLAWEVAKRLNK----ANVSCDLI--TGQ-EREEVDGAKHRAVT 148 (508)
Q Consensus 81 iv~~pTGsGKT~~~~~---~l~~~--~~~i~l~P~r~La~q~~~~l~~----~g~~~~~~--~g~-~~~~~~~~~~iv~T 148 (508)
++.|+-|-|||.+.=. .+... .++++++|+..-+..+++.+.. +|.+.... .+. .........+.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 5789999999998522 22222 3678889999988888766542 23222000 000 00001133444555
Q ss_pred ceeccc-cCCccEEEEccccccC
Q 010534 149 VEMADV-VSDYDCAVIDEIQMLG 170 (508)
Q Consensus 149 ~e~~~~-l~~~~~iViDEah~~~ 170 (508)
|+.+.. ....|++|||||=.+.
T Consensus 81 Pd~l~~~~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 81 PDELLAEKPQADLLIVDEAAAIP 103 (177)
T ss_dssp HHHHCCT----SCEEECTGGGS-
T ss_pred CHHHHhCcCCCCEEEEechhcCC
Confidence 533332 3467999999998875
No 352
>PLN02165 adenylate isopentenyltransferase
Probab=92.39 E-value=0.14 Score=50.37 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.9
Q ss_pred cCCceEEEEccCCCchHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~ 96 (508)
..++.++|.||||||||+.+..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 4678999999999999987755
No 353
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.34 E-value=0.11 Score=55.18 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..++.||.|+|||+.|..
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35688999999999999743
No 354
>PRK04328 hypothetical protein; Provisional
Probab=92.21 E-value=0.19 Score=47.95 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|+|||+.+++.+.+ +.+++|+. +-+-..++.+.++.+|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 4889999999999999998776643 45677773 333344556666666543
No 355
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.20 E-value=0.25 Score=46.25 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.|++|+|||..+++.+. ++.+++|+.- .+-..++.+++..+|..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGWD 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 378899999999999999776653 3446677633 33456777777776644
No 356
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.17 E-value=0.34 Score=49.55 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCceEEEEccCCCchHHHHHH----HHHc-C-CC-EEEEc-chHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALS----RLES-S-SS-GIYCG-PLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~----~l~~-~-~~-~i~l~-P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (508)
+++.+.++||||+|||+.... .+.. + .+ +++.. ..|.-+.++...+. -+|+++.........
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl--------- 260 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL--------- 260 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH---------
Confidence 478899999999999999532 2222 2 23 34443 33555555555544 346665433221110
Q ss_pred EcceeccccCCccEEEEccc
Q 010534 147 VTVEMADVVSDYDCAVIDEI 166 (508)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEa 166 (508)
...+..+...++++||.+
T Consensus 261 --~~al~~l~~~d~VLIDTa 278 (420)
T PRK14721 261 --QLMLHELRGKHMVLIDTV 278 (420)
T ss_pred --HHHHHHhcCCCEEEecCC
Confidence 012234577899999986
No 357
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.16 Score=54.36 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.2
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
+.+++.||.|+|||++|..
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5688999999999999743
No 358
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.04 E-value=0.16 Score=54.56 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=19.6
Q ss_pred chHHHhcCCceEEEEccCCCchHHHH
Q 010534 69 YPLARKKVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 69 ~~~~~~~~~~~~iv~~pTGsGKT~~~ 94 (508)
+..+....+..++++||||||||+..
T Consensus 308 l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 308 FLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 33333345778999999999999984
No 359
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.01 E-value=0.45 Score=51.79 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=42.5
Q ss_pred CCeeEEEecccccccccc-c--ccEEEEcccccc---cC----------c-------------ccccC---ChhhHHhhh
Q 010534 290 SEFDVLVASDAIGMGLNL-N--ISRIIFSTMKKF---DG----------V-------------ELRDL---TVPEVKQIA 337 (508)
Q Consensus 290 g~~~ilVaT~~~~~Gidi-p--v~~VI~~~~~~~---d~----------~-------------~~~p~---s~~~~~Qr~ 337 (508)
|..-..||=--+++|+|+ + -+.||..|.+.. |+ . +..|. ......|-+
T Consensus 624 ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAi 703 (945)
T KOG1132|consen 624 GAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAI 703 (945)
T ss_pred ceEEEEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHH
Confidence 444567777899999999 5 778898888751 11 0 11222 345678999
Q ss_pred ccCCCCCCCCCcEEEEEe
Q 010534 338 GRAGRYGSKFPVGEVTCL 355 (508)
Q Consensus 338 GRagR~g~~~~~G~~~~~ 355 (508)
||+-|...++ |.++.+
T Consensus 704 GRviRHR~D~--Gav~l~ 719 (945)
T KOG1132|consen 704 GRVIRHRNDY--GAVILC 719 (945)
T ss_pred HHHHhhhccc--ceeeEe
Confidence 9999998753 444433
No 360
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.98 E-value=0.29 Score=45.91 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.|++|+|||+.+.+.+ .++.+++|+.- -....++.++.+.+|..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFGMD 73 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhCCC
Confidence 48899999999999999876543 33445666632 23335555555555543
No 361
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.95 E-value=0.11 Score=43.51 Aligned_cols=15 Identities=47% Similarity=0.348 Sum_probs=13.7
Q ss_pred EEEEccCCCchHHHH
Q 010534 80 ILHVGPTNSGKTHQA 94 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~ 94 (508)
++|.|++|||||+++
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 579999999999986
No 362
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.93 E-value=0.87 Score=51.42 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
....++++.||+|+|||+.+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CCcCceEEECCCCCCHHHHH
Confidence 35678999999999999996
No 363
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.92 E-value=0.14 Score=46.85 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=14.9
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
..++++||||||||+..
T Consensus 2 GlilI~GptGSGKTTll 18 (198)
T cd01131 2 GLVLVTGPTGSGKSTTL 18 (198)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999995
No 364
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.90 E-value=0.14 Score=53.76 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCCchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~ 95 (508)
..+..++++||||||||+..-
T Consensus 240 ~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 345678999999999999853
No 365
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.84 E-value=0.2 Score=52.88 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=15.4
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+..+++||.|+|||+.+.
T Consensus 37 hayLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSAR 54 (535)
T ss_pred eeEEEECCCCCcHHHHHH
Confidence 446899999999999974
No 366
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=91.84 E-value=0.22 Score=50.26 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=51.7
Q ss_pred cCCceEEEEccCCCchHHHH--HHHHHcC-CCE-EEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcce
Q 010534 75 KVRKVILHVGPTNSGKTHQA--LSRLESS-SSG-IYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~--~~~l~~~-~~~-i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (508)
-.+..|++.|+||+||++.| +..+... ..+ .+-+..-+++......- =+|..-+..+|..... . .
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~e-LFG~~kGaftGa~~~k---~-------G 167 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAE-LFGHEKGAFTGAQGGK---A-------G 167 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHH-HhccccceeecccCCc---C-------c
Confidence 36899999999999999997 4434333 233 44466555554443322 3577777777733221 0 0
Q ss_pred eccccCCccEEEEccccccCC
Q 010534 151 MADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 151 ~~~~l~~~~~iViDEah~~~~ 171 (508)
.+. .-+=+.+.+||+|.+.-
T Consensus 168 lfe-~A~GGtLfLDEI~~LP~ 187 (403)
T COG1221 168 LFE-QANGGTLFLDEIHRLPP 187 (403)
T ss_pred hhe-ecCCCEEehhhhhhCCH
Confidence 010 02236899999999963
No 367
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.83 E-value=0.32 Score=48.16 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=15.7
Q ss_pred eEEEEccCCCchHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALS 96 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~ 96 (508)
-+++.||.|+|||+.+..
T Consensus 26 alL~~Gp~G~Gktt~a~~ 43 (325)
T COG0470 26 ALLFYGPPGVGKTTAALA 43 (325)
T ss_pred eeeeeCCCCCCHHHHHHH
Confidence 499999999999999743
No 368
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.81 E-value=0.13 Score=50.71 Aligned_cols=19 Identities=47% Similarity=0.468 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+.+++++||||||||+..
T Consensus 143 ~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5899999999999999974
No 369
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.77 E-value=0.17 Score=50.01 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+++++++|+||||||+.+
T Consensus 147 ~~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLV 165 (319)
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 5899999999999999874
No 370
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.76 E-value=0.26 Score=44.24 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGP 109 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P 109 (508)
.++..++.||.+||||+-.++.+.. +.++++.-|
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp 40 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKP 40 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEec
Confidence 3567899999999999987766542 234455555
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.75 E-value=0.49 Score=45.66 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHc-CCCEEEE--cchHHHHHHHHHHH-HhCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~-~~~~i~l--~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
+.+.++++||+|+|||+.+. ..+.+ +.++.++ =+.|.-+.++...+ +..|+++. ...... +..-+ .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~---dp~~~--~ 143 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGA---DPAAV--A 143 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCC---CHHHH--H
Confidence 35788889999999999852 22333 3455554 24566555444444 45564432 111110 00000 0
Q ss_pred ceecc--ccCCccEEEEccccccC
Q 010534 149 VEMAD--VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 149 ~e~~~--~l~~~~~iViDEah~~~ 170 (508)
.+.+. ...++++|+||=+-...
T Consensus 144 ~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 144 FDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCc
Confidence 01111 13678999999886653
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.73 E-value=0.24 Score=45.64 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=25.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCG 108 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~ 108 (508)
.++.+.+.||+|||||..+++.+. .+.+++|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 478999999999999999877663 334677773
No 373
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.71 E-value=0.66 Score=50.48 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=64.6
Q ss_pred cchHHHhcCCceEEEEccCCCchHHHH---HHHHHc-C--CCEEEEcchHHHHHHHHHHHH----hCCCceeeec---cc
Q 010534 68 WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-S--SSGIYCGPLRLLAWEVAKRLN----KANVSCDLIT---GQ 134 (508)
Q Consensus 68 ~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~-~--~~~i~l~P~r~La~q~~~~l~----~~g~~~~~~~---g~ 134 (508)
.+..+.....+.+++.|.=|=|||.++ +..+.. . .++++.+|+.+-+..+.+.+. .+|.+-.+.. |.
T Consensus 222 ~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~ 301 (758)
T COG1444 222 ILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE 301 (758)
T ss_pred HHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc
Confidence 444455556679999999999999994 333322 2 367888999999888876654 3454433221 22
Q ss_pred ccccc-CCCcEEEEcceeccccCCccEEEEccccccC
Q 010534 135 EREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 135 ~~~~~-~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (508)
..... +...+-+..|.... .. -+++|||||=.+.
T Consensus 302 ~~~~~~~~~~i~y~~P~~a~-~~-~DllvVDEAAaIp 336 (758)
T COG1444 302 IREVSGDGFRIEYVPPDDAQ-EE-ADLLVVDEAAAIP 336 (758)
T ss_pred eeeecCCceeEEeeCcchhc-cc-CCEEEEehhhcCC
Confidence 11111 22335567776655 33 8999999998875
No 374
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.68 E-value=0.37 Score=41.22 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=19.2
Q ss_pred eEEEEccCCCchHHHHHHHHHcCC
Q 010534 79 VILHVGPTNSGKTHQALSRLESSS 102 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~~~ 102 (508)
.++++||+|||||+.+-......+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 478999999999999866664444
No 375
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.62 E-value=0.21 Score=49.01 Aligned_cols=24 Identities=50% Similarity=0.614 Sum_probs=19.3
Q ss_pred CceEEEEccCCCchHHHHHHHHHc
Q 010534 77 RKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
.+.++++||||||||..+......
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~ 27 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKR 27 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHh
Confidence 568999999999999987655443
No 376
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.54 E-value=0.096 Score=56.36 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.1
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
+..++.||.|+|||+.|..
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4588999999999999743
No 377
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.52 E-value=0.22 Score=52.39 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc-----CCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~-----~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.+..++|.||+|||||+.+++++.+ +.+++|+.- -+-..++.+.++.+|...
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGWDL 76 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCCCH
Confidence 4899999999999999999888653 357788743 245566666677776543
No 378
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.18 Score=50.54 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=20.7
Q ss_pred CCceEEEEccCCCchHHHH--HHHHHcCC
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLESSS 102 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~~~~ 102 (508)
...|+++.||||||||+.+ +..+++-+
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ldVP 253 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLDVP 253 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhCCC
Confidence 4678999999999999986 44454433
No 379
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.30 E-value=0.77 Score=48.54 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=55.4
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFST 316 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~ 316 (508)
..++.. +...+.++.+.+++.....+.++||+++..+|.++.....+ |+.+|+|+|..+-. ..+ ++..||..+
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 444444 78888899999987655579999999999999988888888 88899999975332 334 367777544
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.29 E-value=0.56 Score=47.74 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=47.0
Q ss_pred CCceEEEEccCCCchHHHHHHHH----Hc-CCCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAV 147 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~-~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~ 147 (508)
++..++++||||+|||+.+.+.. .. +.++.++ =+.|..+.++..+.. ..|++......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~-------------- 287 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-------------- 287 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHH--------------
Confidence 35678899999999999964333 23 3344443 566777777666664 44554422100
Q ss_pred cceeccc--cCCccEEEEcccccc
Q 010534 148 TVEMADV--VSDYDCAVIDEIQML 169 (508)
Q Consensus 148 T~e~~~~--l~~~~~iViDEah~~ 169 (508)
..+.... ...+++|+||=+-..
T Consensus 288 ~~~l~~~l~~~~~D~VLIDTaGr~ 311 (432)
T PRK12724 288 IKKFKETLARDGSELILIDTAGYS 311 (432)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC
Confidence 0011111 157899999976544
No 381
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.28 E-value=0.11 Score=54.64 Aligned_cols=18 Identities=39% Similarity=0.528 Sum_probs=15.4
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||.|+|||+.+.
T Consensus 37 ha~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTAR 54 (504)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 446999999999999963
No 382
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.27 E-value=0.29 Score=53.23 Aligned_cols=57 Identities=18% Similarity=0.008 Sum_probs=44.5
Q ss_pred cCCceEEEEccCCCchHHHH-HHHHH-cCCCEEEEcchHHHHHHHHHHHHhCCCceeee
Q 010534 75 KVRKVILHVGPTNSGKTHQA-LSRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~-~~~l~-~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (508)
...++++++||||||||..+ +..++ -.+..|++=|--++........++.|..|-++
T Consensus 137 ~~~~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~F 195 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKF 195 (670)
T ss_pred CCCceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEe
Confidence 44679999999999999984 33333 35678888999999988888777788777654
No 383
>PRK14530 adenylate kinase; Provisional
Probab=91.21 E-value=0.16 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=18.4
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+..+++.||+|||||+++-...
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999875443
No 384
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.19 E-value=0.75 Score=46.88 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=16.9
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+.+++.||.|+|||+.+..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~ 55 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARA 55 (394)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46689999999999998743
No 385
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.18 E-value=0.18 Score=50.61 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..++++||||||||+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35789999999999999974
No 386
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.16 E-value=0.21 Score=48.16 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
.++.++++||||+|||..+-..+.+
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCCcEEEECCCCCchhHHHHhhhcc
Confidence 6899999999999999997666643
No 387
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.09 E-value=0.61 Score=44.85 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=46.7
Q ss_pred CCceEEEEccCCCchHHHHH---HHHHc-CCCEEEE-c-chH-HHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC-G-PLR-LLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~~-~~~~i~l-~-P~r-~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
++..+.+.||+|+|||+.+. ..+.. +.++.++ . +.| ..+.|+.......|+++........ +.-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~--------l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA--------MTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHH--------HHHH
Confidence 45889999999999999852 22222 3344333 3 444 4566666555555655433211100 0000
Q ss_pred ceeccccCCccEEEEcccccc
Q 010534 149 VEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 149 ~e~~~~l~~~~~iViDEah~~ 169 (508)
.+.+....++++|+||-+=..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCC
Confidence 011112247899999998654
No 388
>PRK13764 ATPase; Provisional
Probab=91.07 E-value=0.27 Score=52.50 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=21.7
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHcCCCEE
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGI 105 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i 105 (508)
.+++++++||||||||+.+ ...+...++.+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV 288 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIV 288 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE
Confidence 4788999999999999984 23334444544
No 389
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.05 E-value=0.45 Score=46.90 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
.++.+.|.||+|||||+.+++.+. .++.++|+-....+..+ .++.+|+... .++++.+..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~~-------------~l~v~~p~~ 117 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDID-------------NLLVSQPDT 117 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCHH-------------HeEEecCCC
Confidence 478999999999999999877663 45678888544444433 3445555421 122222211
Q ss_pred -------c---cccCCccEEEEccccccC
Q 010534 152 -------A---DVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 152 -------~---~~l~~~~~iViDEah~~~ 170 (508)
+ ..-..+++||||=+-.+.
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 1 112568999999887653
No 390
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.04 E-value=1.6 Score=39.41 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..++.||.|+|||+.+.
T Consensus 14 ~~~~L~~G~~G~gkt~~a~ 32 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLAL 32 (188)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3668999999999999863
No 391
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.04 E-value=0.43 Score=47.86 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.7
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+..++.||.|+|||+.+.
T Consensus 46 ha~L~~G~~G~GKttlA~ 63 (351)
T PRK09112 46 HALLFEGPEGIGKATLAF 63 (351)
T ss_pred eeEeeECCCCCCHHHHHH
Confidence 468999999999999964
No 392
>PRK10867 signal recognition particle protein; Provisional
Probab=90.91 E-value=0.64 Score=47.84 Aligned_cols=53 Identities=28% Similarity=0.250 Sum_probs=33.2
Q ss_pred CceEEEEccCCCchHHHHHH---HHH-c-CCCEEEE--cchHHHHHHHHHHHH-hCCCcee
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLE-S-SSSGIYC--GPLRLLAWEVAKRLN-KANVSCD 129 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~-~-~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~ 129 (508)
...++++|++|+|||+.+.. ++. . +.+++++ =+.|..+.++.+.+. ..|+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 46788999999999998532 232 3 4456554 456666655554443 4565543
No 393
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.84 E-value=0.41 Score=51.91 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=44.7
Q ss_pred CCceEEEEccCCCchHHHH-HHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 76 VRKVILHVGPTNSGKTHQA-LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~-~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
...++++.||||||||... +..++. .+.++++=|..++....+...++.|.+|-++.
T Consensus 223 g~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfd 281 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLD 281 (641)
T ss_pred CCceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEe
Confidence 3679999999999999983 344444 56777778999998888887778888877664
No 394
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=90.81 E-value=0.33 Score=53.46 Aligned_cols=47 Identities=21% Similarity=0.119 Sum_probs=36.6
Q ss_pred CceEEEEccCCCchHHHHHHH---HHc-C----CCEEEEcchHHHHHHHHHHHHh
Q 010534 77 RKVILHVGPTNSGKTHQALSR---LES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~---l~~-~----~~~i~l~P~r~La~q~~~~l~~ 123 (508)
...++|.|..|||||++.... +.+ . .+++++..|+..|.++.+++.+
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 567999999999999996433 332 2 2567788999999999999874
No 395
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.80 E-value=0.28 Score=54.53 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=44.3
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH---HHHc-C----CCEEEEcchHHHHHHHHHHHHhC
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~---~l~~-~----~~~i~l~P~r~La~q~~~~l~~~ 124 (508)
..|++.|. ++.. ....++|.|..|||||.+... ++.+ . .+++++.-|+..|.++.+|+.++
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT----TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC----CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 35666676 4432 256789999999999999643 3333 2 25788899999999999998743
No 396
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.74 E-value=0.34 Score=45.00 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.+..+++.|++|||||+.+++.+. .+++++|+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 478999999999999999877663 34567777
No 397
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.63 E-value=0.36 Score=56.73 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=43.9
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcC---CCEEEEcchHHHHHHHHHHHHh
Q 010534 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS---SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~---~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+|+.|. ++. ..+++++|.|.-|||||++....+ ..+ .+.+++.=|+..|.++.+|+.+
T Consensus 2 ~t~~Q~~ai~----~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY----TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh----CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 455666 554 348899999999999999964433 322 3578999999999999988874
No 398
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.59 E-value=0.25 Score=49.47 Aligned_cols=19 Identities=47% Similarity=0.679 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..++++||||||||+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 5788999999999999985
No 399
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=90.59 E-value=0.19 Score=51.68 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=30.4
Q ss_pred cCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~ 115 (508)
...+++++.|+||||||+.....+ ..+.+++++=|..++..
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVS 84 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhH
Confidence 457899999999999999863333 23567788888776554
No 400
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.59 E-value=1 Score=49.58 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=56.1
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccc-cccEEEEcc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFST 316 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi-pv~~VI~~~ 316 (508)
..++.. ++..+.++.+.+++..+..+..+||+++..+|.+....... |+.+|+|+|..+- -+.+ ++..||..+
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~--g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR--GEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc--CCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 444444 89999999999987654589999999999999988888888 8899999997432 2445 367777544
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.56 E-value=0.56 Score=46.34 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=47.5
Q ss_pred CCceEEEEccCCCchHHHHH---HHHH-cCCCEEEE-c-chHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYC-G-PLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~-~~~~~i~l-~-P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
+++.+.++||+|+|||+.+. ..+. .+++++++ . +.|..+.++...+. ..++++... .... +...+ .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~---dpa~~--v 185 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGA---DPASV--A 185 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCC---CHHHH--H
Confidence 46889999999999999952 2222 34556555 3 34655544444443 445443221 1000 00000 0
Q ss_pred ceec--cccCCccEEEEccccccC
Q 010534 149 VEMA--DVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 149 ~e~~--~~l~~~~~iViDEah~~~ 170 (508)
.+.+ ....++++||||=+-...
T Consensus 186 ~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 186 FDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCc
Confidence 0111 123779999999987764
No 402
>PRK08233 hypothetical protein; Provisional
Probab=90.56 E-value=0.2 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=17.6
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
+...+.+.|++|||||+.+-..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L 23 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERL 23 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3467888999999999987443
No 403
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=0.31 Score=46.51 Aligned_cols=72 Identities=22% Similarity=0.143 Sum_probs=48.0
Q ss_pred ceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceeccccCC
Q 010534 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSD 157 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l~~ 157 (508)
+-+++.||.|+||++.|-...-+++.+.+-+....|+..+...-.++-.+. . + +..-++
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknL---------F-----------e-mARe~k 225 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNL---------F-----------E-MARENK 225 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHH---------H-----------H-HHHhcC
Confidence 568999999999999886666677788888888888766543222110000 0 0 011256
Q ss_pred ccEEEEccccccC
Q 010534 158 YDCAVIDEIQMLG 170 (508)
Q Consensus 158 ~~~iViDEah~~~ 170 (508)
.++|.|||++.+.
T Consensus 226 PSIIFiDEiDslc 238 (439)
T KOG0739|consen 226 PSIIFIDEIDSLC 238 (439)
T ss_pred CcEEEeehhhhhc
Confidence 7889999999774
No 404
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.51 E-value=0.52 Score=46.51 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=35.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.++.+.+.||+|||||+.+++.+. .++.++|+-+.-.+-.+ +++.+|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd 106 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVD 106 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCC
Confidence 378999999999999999877663 35688998655544433 34455543
No 405
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=90.49 E-value=0.76 Score=43.79 Aligned_cols=89 Identities=19% Similarity=0.032 Sum_probs=44.3
Q ss_pred eEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceeccc
Q 010534 79 VILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~ 154 (508)
..+..|+.||+||.-|++. ..++|+.|+.-=+-.-.+.+++++...--.+.++.-+ .......-..-.-+.+
T Consensus 3 I~ihhG~pGSyKTsgAv~~~~iPA~ksGR~IITNVrGl~ler~~~~~pd~~~~i~I~n~D----~~~~d~~~~m~~~~~w 78 (398)
T COG4128 3 ISIHHGIPGSYKTSGAVCNVIIPAFKSGRRIITNVRGLQLERITERYPDATGEIIIVNDD----VLKADFFPFMGGEGSW 78 (398)
T ss_pred eEEEecCCCCcccchhHHhhhhhhhcCCcEEEEecccccHHHHHHhccCCCCceEEEecc----ccCcccchhhcceeec
Confidence 3578999999999997543 2456666665322222223333333221111111000 0001111011122334
Q ss_pred cCCccEEEEccccccCC
Q 010534 155 VSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 155 l~~~~~iViDEah~~~~ 171 (508)
-..=.++||||+..+.-
T Consensus 79 a~~gafl~iDE~~rifp 95 (398)
T COG4128 79 AQFGAFLVIDEAWRIFP 95 (398)
T ss_pred cccCcEEEEechhhccC
Confidence 46778999999999864
No 406
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=90.48 E-value=0.33 Score=55.11 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=70.4
Q ss_pred CCCCCccc-cchHHH---hcCCceEEEEccCCCchHHHHHHHHHc--------CCCEEEEcchHHHHHHHHHHHHhC--C
Q 010534 60 TDLTRPHT-WYPLAR---KKVRKVILHVGPTNSGKTHQALSRLES--------SSSGIYCGPLRLLAWEVAKRLNKA--N 125 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~---~~~~~~~iv~~pTGsGKT~~~~~~l~~--------~~~~i~l~P~r~La~q~~~~l~~~--g 125 (508)
..++++|. ...... ...+...++..+.|.|||.+++..+.. .+..++++|+..+ .++.+.+.++ .
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~-~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLL-SNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHH-HHHHHHHhhhCcc
Confidence 45666676 444433 234677788899999999997655532 3467888887544 5555555544 3
Q ss_pred Cc-eeeecccccc------cc---CC------CcEEEEcceeccc---c------CCccEEEEccccccCC
Q 010534 126 VS-CDLITGQERE------EV---DG------AKHRAVTVEMADV---V------SDYDCAVIDEIQMLGC 171 (508)
Q Consensus 126 ~~-~~~~~g~~~~------~~---~~------~~~iv~T~e~~~~---l------~~~~~iViDEah~~~~ 171 (508)
.. +...+|.... .. .. ..++++|.+.+.. . ..++.+|+||+|.+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 33 5566665531 11 12 4566677655543 2 6799999999999864
No 407
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.46 E-value=0.2 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.4
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
++.+++.||+|||||+.+-...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999754333
No 408
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.44 E-value=0.22 Score=53.18 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.5
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..++.||.|+|||+.|..
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35588999999999999743
No 409
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=90.40 E-value=0.97 Score=46.30 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=54.1
Q ss_pred ceEEEEccCCCchHHHHHHHH----H---cCCCEEEEcchHH-HHHHHHHHHH----hCCCceeeecccc--cc-ccC-C
Q 010534 78 KVILHVGPTNSGKTHQALSRL----E---SSSSGIYCGPLRL-LAWEVAKRLN----KANVSCDLITGQE--RE-EVD-G 141 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l----~---~~~~~i~l~P~r~-La~q~~~~l~----~~g~~~~~~~g~~--~~-~~~-~ 141 (508)
+..++.|..|||||..+...+ . ...+.+++-|+.. |...++..+. .+|+....-.... .. ... +
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCC
Confidence 457889999999999953222 2 3445677777766 6666666655 4555422221111 11 112 3
Q ss_pred CcEEEEcc-e---eccccCCccEEEEccccccCC
Q 010534 142 AKHRAVTV-E---MADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 142 ~~~iv~T~-e---~~~~l~~~~~iViDEah~~~~ 171 (508)
..+++.+- + .+.....++.+.+|||.++..
T Consensus 82 ~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~ 115 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTF 115 (396)
T ss_pred eEEEeecccCChhHhhCcceeeeehhhhhhhcCH
Confidence 34444443 2 222234579999999999864
No 410
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=90.34 E-value=0.4 Score=44.81 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.+..+.+.|++|+|||+.+++.+. .+.+++|+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi 57 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYI 57 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 378999999999999999866653 34567776
No 411
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.31 E-value=1.6 Score=38.42 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=17.4
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+..++.||.|+||++.|...+
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a 40 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFA 40 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHH
Confidence 4567999999999999975544
No 412
>PRK08118 topology modulation protein; Reviewed
Probab=90.24 E-value=0.2 Score=44.47 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.3
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.++|+||.|||||+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak 19 (167)
T PRK08118 2 KKIILIGSGGSGKSTLAR 19 (167)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358999999999999863
No 413
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.15 E-value=0.32 Score=48.90 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.6
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
.+..++.||.|+|||+.+
T Consensus 36 ~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356789999999999986
No 414
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.06 E-value=0.8 Score=43.22 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=30.3
Q ss_pred CCceEEEEccCCCchHHHHHHHH----Hc-CCCEEEE---cchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYC---GPLRLLAWEV 117 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~-~~~~i~l---~P~r~La~q~ 117 (508)
.+..++|.|++|+|||+.+++.+ .+ +.+++|+ .|...++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 47899999999999999876554 33 5577777 4555555444
No 415
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.99 E-value=1.6 Score=48.66 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
....++++.||+|+|||+.+
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCCCceEEECCCCCCHHHHH
Confidence 35678999999999999985
No 416
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=89.98 E-value=0.46 Score=46.29 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCceEEEEccCCCchHHHH----HHHHHcCCCEEEE---cchHHHHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYC---GPLRLLAWEVAKRLN 122 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l---~P~r~La~q~~~~l~ 122 (508)
.+.-+++.||||||||+-. +-...++-+.+++ .|..-||..+.....
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qya 325 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYA 325 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHc
Confidence 4788999999999999873 3333445566766 677777776665554
No 417
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.95 E-value=0.34 Score=52.40 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.0
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
.....++++||||+|.+..
T Consensus 117 P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 117 PQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred cccCCcEEEEEECcccCCH
Confidence 4557899999999999974
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.95 E-value=0.69 Score=41.18 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=41.7
Q ss_pred eEEEEccCCCchHHHHHHH---HHc-CCCEEEE-c-chHHHHHHHHHH-HHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 79 VILHVGPTNSGKTHQALSR---LES-SSSGIYC-G-PLRLLAWEVAKR-LNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~---l~~-~~~~i~l-~-P~r~La~q~~~~-l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
.+++.|++|+|||+.+... +.+ +.+++++ . +.|.-..+.... ..+.|+++.. ..... +...+ . .+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~--~~~~~---~~~~~-~-~~~ 74 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFE--EGEGK---DPVSI-A-KRA 74 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEe--cCCCC---CHHHH-H-HHH
Confidence 4688999999999996332 333 3456555 3 444333332322 2334433221 11000 00000 0 011
Q ss_pred cc--ccCCccEEEEccccccC
Q 010534 152 AD--VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 152 ~~--~l~~~~~iViDEah~~~ 170 (508)
.. ....++++|+|......
T Consensus 75 ~~~~~~~~~d~viiDt~g~~~ 95 (173)
T cd03115 75 IEHAREENFDVVIVDTAGRLQ 95 (173)
T ss_pred HHHHHhCCCCEEEEECcccch
Confidence 11 12578899999988753
No 419
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=89.93 E-value=0.63 Score=50.91 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=47.3
Q ss_pred CCCCccc-cchHHHhc--CC-ceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhC
Q 010534 61 DLTRPHT-WYPLARKK--VR-KVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA 124 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~--~~-~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~ 124 (508)
.|+..|. ++..+... ++ +..++.|.||||||+.+...+.. +..+++++|+...|.++++.+..+
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4566666 55544222 12 24679999999999997666554 467899999999999999999865
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=89.88 E-value=0.22 Score=44.69 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.6
Q ss_pred eEEEEccCCCchHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALS 96 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~ 96 (508)
.+++.||+||||||+|-.
T Consensus 2 riiilG~pGaGK~T~A~~ 19 (178)
T COG0563 2 RILILGPPGAGKSTLAKK 19 (178)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999998743
No 421
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=89.82 E-value=0.63 Score=50.23 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=44.2
Q ss_pred CCceEEEEccCCCchHHHH--HHHHHcCCCEEEEcchHHHHHHHHHHHHhCC-Cceeeec
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKAN-VSCDLIT 132 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g-~~~~~~~ 132 (508)
...++++.||||||||... +..|.-.+.++++=|..++....+..-++.| .+|.++.
T Consensus 210 g~~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfd 269 (623)
T TIGR02767 210 GSTHMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLD 269 (623)
T ss_pred CCceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEe
Confidence 3589999999999999973 4444446678888999999888887777776 6676653
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.81 E-value=0.25 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.4
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
++.++++|+.|||||+.+-...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~ 23 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQ 23 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999874443
No 423
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=89.80 E-value=0.28 Score=49.45 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=16.6
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..++++||||||||+..
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4667999999999999984
No 424
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.80 E-value=0.56 Score=46.12 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=53.3
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCC----EEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSS----GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~----~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
=..+|+.||.|+|||+.|-......+. -|=+.-|.+-+.++.+.+.+.... .
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~------------------------~ 217 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNE------------------------K 217 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHH------------------------H
Confidence 367899999999999988555544432 233355555555555555421000 0
Q ss_pred cccCCccEEEEccccccCCCCcChHHHHHHhc-ccCCceEEEccCCcch
Q 010534 153 DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG-ICANELHLCGDPAAVP 200 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~-l~~~~~~~~~~~~~~~ 200 (508)
...++=.++.|||+|++.-. ..+.++- +-...+.++|.++..+
T Consensus 218 ~l~krkTilFiDEiHRFNks-----QQD~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKS-----QQDTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhh-----hhhcccceeccCceEEEecccCCC
Confidence 01123357899999998532 1344433 2234566677655433
No 425
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.68 E-value=0.29 Score=48.25 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=30.2
Q ss_pred CCCccccchHHHhcCCceEEEEccCCCchHHHH---HHHHHcCCCEEEEcch
Q 010534 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPL 110 (508)
Q Consensus 62 ~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l~P~ 110 (508)
+...+.++-......+++++++|+||||||+.. +..+-...+.+.+--+
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt 179 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDT 179 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEecc
Confidence 333343332333347999999999999999984 3333345566665333
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=89.67 E-value=0.32 Score=44.64 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.3
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
+++.++++||+|||||+.+-..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l 25 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKAL 25 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 5789999999999999875433
No 427
>PRK09354 recA recombinase A; Provisional
Probab=89.66 E-value=0.62 Score=46.37 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=34.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.++.+.|.||+|||||+.+++.+. .++.++|+-.--.+-. .+++.+|+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvd 111 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVD 111 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCC
Confidence 378999999999999999887764 4568888854444443 244555654
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=89.60 E-value=0.5 Score=43.61 Aligned_cols=19 Identities=37% Similarity=0.316 Sum_probs=16.6
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
+...+.|.|++|||||+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4668899999999999985
No 429
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.54 E-value=0.44 Score=43.55 Aligned_cols=15 Identities=47% Similarity=0.434 Sum_probs=13.6
Q ss_pred EEEEccCCCchHHHH
Q 010534 80 ILHVGPTNSGKTHQA 94 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~ 94 (508)
+.+.||+|||||+.+
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999986
No 430
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=89.52 E-value=0.42 Score=46.50 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=20.0
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCC
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSS 102 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~ 102 (508)
.+.++|.|||+||||-.++....+-+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~ 28 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLG 28 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcC
Confidence 46789999999999987766554443
No 431
>PRK07261 topology modulation protein; Provisional
Probab=89.52 E-value=0.25 Score=44.10 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.5
Q ss_pred eEEEEccCCCchHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALS 96 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~ 96 (508)
.++|+|++|||||+.+-.
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999998744
No 432
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=89.50 E-value=0.42 Score=44.08 Aligned_cols=19 Identities=37% Similarity=0.254 Sum_probs=16.7
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||+|||||+.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 4778899999999999975
No 433
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.46 E-value=0.39 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=19.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
.++.++++||+|||||+.+-..+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999976554443
No 434
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.45 E-value=0.74 Score=41.69 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=29.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHH--------------cCCCEEEEcchHHHHHHHHHHHHh
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE--------------SSSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~--------------~~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
.+..+++.||+|+|||+.+++.+. ...+++|+..--. ..++.+++..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 488999999999999999754432 2346677733322 4455666653
No 435
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=89.45 E-value=0.42 Score=46.34 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEccCCCchHHHHHHHHHcCCCEEEEc
Q 010534 80 ILHVGPTNSGKTHQALSRLESSSSGIYCG 108 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l~~~~~~i~l~ 108 (508)
++|+||||||||..+.......+..++-+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~ 30 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISV 30 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEe
Confidence 68999999999998877665443333333
No 436
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.34 E-value=0.27 Score=44.48 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=16.1
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..++++||+|||||+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568999999999999985
No 437
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=89.24 E-value=0.48 Score=46.77 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----------CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----------~~~~i~l 107 (508)
.+..+.+.||+|||||..+++...+ +++++|+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi 135 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYI 135 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEE
Confidence 3789999999999999998877643 2467887
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.22 E-value=0.33 Score=41.52 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.1
Q ss_pred EEEEccCCCchHHHHHHHH
Q 010534 80 ILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l 98 (508)
++++||||||||+.+-...
T Consensus 2 i~i~GpsGsGKstl~~~L~ 20 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLL 20 (137)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999998754444
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.17 E-value=0.27 Score=44.91 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=19.8
Q ss_pred cCCceEEEEccCCCchHHHH--HHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA--LSRLE 99 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~--~~~l~ 99 (508)
.++.+++++||.|||||+.. +..|.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 36899999999999999973 44443
No 440
>PLN02840 tRNA dimethylallyltransferase
Probab=89.07 E-value=0.42 Score=48.66 Aligned_cols=24 Identities=46% Similarity=0.595 Sum_probs=19.4
Q ss_pred cCCceEEEEccCCCchHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.++..++|.||||||||+.+....
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La 42 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELA 42 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999876444
No 441
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.05 E-value=0.3 Score=43.84 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.7
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
++.+++.||+|||||+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLL 18 (179)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999986
No 442
>PRK06762 hypothetical protein; Provisional
Probab=88.99 E-value=0.74 Score=40.63 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=17.1
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
..++++|+.|||||+.+-...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~ 23 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQ 23 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568899999999999974433
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=88.98 E-value=0.63 Score=37.80 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=18.8
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.++.+.+.||+|||||+.+...+
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46889999999999999864433
No 444
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.98 E-value=0.3 Score=50.84 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.5
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..++.||.|+|||+.+..
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHH
Confidence 35688999999999999743
No 445
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.97 E-value=0.32 Score=43.21 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=17.9
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
++..+++.|++|||||+.+-.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~ 23 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRL 23 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHH
Confidence 467899999999999999643
No 446
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=1.3 Score=45.91 Aligned_cols=104 Identities=22% Similarity=0.219 Sum_probs=55.9
Q ss_pred ceEEEEccCCCchHHHHHHHHHcCC--CEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceecccc
Q 010534 78 KVILHVGPTNSGKTHQALSRLESSS--SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~~~--~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l 155 (508)
..+++.||.|||||..|.+...... -+=+|.|.......=..++.. +.+-... ..-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~-------i~k~F~D---------------AYk 596 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAH-------IKKIFED---------------AYK 596 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHH-------HHHHHHH---------------hhc
Confidence 5688999999999998877665543 334556643222111111110 0000000 011
Q ss_pred CCccEEEEccccccCCC-CcChHHHHHHhc----c----cC--CceEEEccCCcchHHH
Q 010534 156 SDYDCAVIDEIQMLGCK-TRGFSFTRALLG----I----CA--NELHLCGDPAAVPLIQ 203 (508)
Q Consensus 156 ~~~~~iViDEah~~~~~-~rg~~~~~~ll~----l----~~--~~~~~~~~~~~~~~~~ 203 (508)
+.+++||+|++..+.|. .-|+.+.+.++. + +. +.+.+.++++.....+
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 56889999999998753 336666544422 1 22 2455566655544443
No 447
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.94 E-value=1.3 Score=47.15 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=72.8
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHhcCC------CeEEEEcCCCCHHHHHHHHHHhcC--CCCCeeEEEec--ccccc
Q 010534 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGK------HLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVAS--DAIGM 303 (508)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~------~~v~~lhg~l~~~~R~~~~~~f~~--~~g~~~ilVaT--~~~~~ 303 (508)
...-+|.+|+|| |.+-...+.+.+++.|. .+-+++-..-+.+ .+++.|.. ..|.--+|+|. .-++.
T Consensus 625 ~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~---dvl~~Ya~a~~~g~GaiLlaVVGGKlSE 701 (821)
T KOG1133|consen 625 SNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVE---DVLEGYAEAAERGRGAILLAVVGGKLSE 701 (821)
T ss_pred HhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHH---HHHHHHHHHhhcCCCeEEEEEecccccc
Confidence 334578888888 87777777777765432 2333444444444 67777765 12222355554 56788
Q ss_pred cccc-c--ccEEEEcccccccCc-------------cc----------ccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 304 GLNL-N--ISRIIFSTMKKFDGV-------------EL----------RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 304 Gidi-p--v~~VI~~~~~~~d~~-------------~~----------~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
|||+ + .+.||..|++..+.. +. ..+-.-...|-+|||=|...+ .+.++.+.
T Consensus 702 GINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~D--YA~i~LlD 778 (821)
T KOG1133|consen 702 GINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKD--YASIYLLD 778 (821)
T ss_pred ccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhcc--ceeEEEeh
Confidence 9999 5 888999999875432 01 112344577999999999875 34445544
No 448
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.88 E-value=1.2 Score=42.92 Aligned_cols=32 Identities=16% Similarity=-0.049 Sum_probs=24.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----c-CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~-~~~~i~l 107 (508)
.+..+++.|++|+|||+.+.+... . +.+++|+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 478999999999999998765443 3 3466666
No 449
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=88.88 E-value=0.49 Score=45.52 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC-------CCEEEEcchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRLL 113 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~-------~~~i~l~P~r~L 113 (508)
+.-..+|.||||||||-. +..|+.. ..+++++|.+-.
T Consensus 86 qP~I~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 86 QPFIGVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred CceEEEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCC
Confidence 345678899999999964 3333332 256888887654
No 450
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.81 E-value=1.3 Score=45.34 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=46.9
Q ss_pred CceEEEEccCCCchHHHHH---HHHHc-CCCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~---~~l~~-~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (508)
...++++|++|+|||+.+. .++.. +.+++++ =|.|..|.++.+.+. ..++++....++... .- ...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp------~~-i~~ 172 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDP------VK-IAS 172 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCH------HH-HHH
Confidence 4678899999999999852 23333 3455544 355766766665554 345554322211100 00 000
Q ss_pred eecccc--CCccEEEEcccccc
Q 010534 150 EMADVV--SDYDCAVIDEIQML 169 (508)
Q Consensus 150 e~~~~l--~~~~~iViDEah~~ 169 (508)
+.+..+ ..+++||||=+-..
T Consensus 173 ~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 173 EGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHHHHhCCCCEEEEECCCCC
Confidence 111111 46899999988654
No 451
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.75 E-value=0.83 Score=52.23 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l 107 (508)
..+.++|.||.|+|||+...+++...+.++++
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~ 62 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKNNLGWY 62 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCCCeEEE
Confidence 46889999999999999998888665556555
No 452
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=88.66 E-value=0.51 Score=40.84 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.8
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcC
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
..++-+++.||.|+|||+.++..+..+
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~g 38 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKRG 38 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358899999999999999998777653
No 453
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=88.64 E-value=0.44 Score=42.72 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=17.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
++..++++||.|||||..+.+....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 3678999999999999887766653
No 454
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.63 E-value=0.53 Score=44.09 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=16.5
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
++++.|.|.||||||+.+
T Consensus 23 ~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 688999999999999985
No 455
>PRK05541 adenylylsulfate kinase; Provisional
Probab=88.61 E-value=0.72 Score=41.22 Aligned_cols=19 Identities=42% Similarity=0.338 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+.+
T Consensus 6 ~~~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIA 24 (176)
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999996
No 456
>PLN02748 tRNA dimethylallyltransferase
Probab=88.61 E-value=0.51 Score=48.92 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.7
Q ss_pred cCCceEEEEccCCCchHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+++.++|.||||||||..+....
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la 43 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLA 43 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 457789999999999999876544
No 457
>PHA00012 I assembly protein
Probab=88.52 E-value=4 Score=40.04 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=16.9
Q ss_pred eEEEEccCCCchHHHHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~ 99 (508)
+.++.|-.|||||+.+...+.
T Consensus 3 iylITGkPGSGKSl~aV~~I~ 23 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRIQ 23 (361)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 468999999999999865543
No 458
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.38 E-value=0.47 Score=50.70 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=17.6
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
+|+.+.++||+|||||+.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLL 378 (529)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6999999999999999975
No 459
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.36 E-value=0.21 Score=43.27 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=24.1
Q ss_pred ceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q 116 (508)
+-.++.||.|||||+.+...+.+-..+++.+..-++|.|
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~ 41 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ 41 (187)
T ss_pred eEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh
Confidence 346788999999999975444433334444444444433
No 460
>PRK14531 adenylate kinase; Provisional
Probab=88.28 E-value=0.35 Score=43.62 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=17.6
Q ss_pred ceEEEEccCCCchHHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
+.+++.||+|||||+++-....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999754443
No 461
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.26 E-value=1 Score=48.83 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=37.5
Q ss_pred CCceEEEEccCCCchHHHH----HHHHHcCCCEEEEcchHH--HHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRL--LAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l~P~r~--La~q~~~~l~~~g~~ 127 (508)
...+++|.|+||+|||..+ .+.+..+..++++=|-.. |...+...++..|-.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4789999999999999985 344555555666666643 777777777666654
No 462
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.18 E-value=1.3 Score=49.35 Aligned_cols=61 Identities=11% Similarity=0.291 Sum_probs=45.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhc----CCCeEEE-EcCCCCHHHHHHHHHHhcCCCCCeeEEEecccc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESR----GKHLCSI-VYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~----~~~~v~~-lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~ 301 (508)
.+++.+++ |..-+.+.++.|++. +...+.. +||.|+.++++...++|.+ |..+|+|+|+..
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~--gdfdIlitTs~F 191 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES--GDFDILITTSQF 191 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc--CCccEEEEeHHH
Confidence 34555555 877777777766654 3123333 9999999999999999999 999999999853
No 463
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.14 E-value=1.5 Score=47.87 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=49.2
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCC-CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~ 300 (508)
..+|.+ ....+..+.+.|+...+ ..+..+||++++.+|.+......+ |+.+|+|+|-.
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IViGtRS 249 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARVVVGTRS 249 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcEEEEcce
Confidence 444444 78888888888887654 579999999999999999999998 99999999975
No 464
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.14 E-value=0.51 Score=41.54 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.0
Q ss_pred EEEEccCCCchHHHHHH
Q 010534 80 ILHVGPTNSGKTHQALS 96 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~ 96 (508)
++++||+|||||+.+-.
T Consensus 1 i~l~G~~GsGKSTla~~ 17 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASA 17 (163)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 36899999999998644
No 465
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=88.08 E-value=1.8 Score=43.00 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.0
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+-.++.||.|.|||+.|.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred ceeeeeECCCCCCHHHHHH
Confidence 3568899999999999864
No 466
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=88.03 E-value=0.63 Score=46.11 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=26.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----------CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----------~~~~i~l 107 (508)
.+..+.+.||+|||||..+++.+.+ +++++|+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi 142 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYI 142 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEE
Confidence 3889999999999999998877753 2367787
No 467
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.02 E-value=0.66 Score=51.56 Aligned_cols=16 Identities=50% Similarity=0.698 Sum_probs=14.5
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+++.||||+|||+.|
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5789999999999886
No 468
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.00 E-value=0.36 Score=44.85 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQ 93 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~ 93 (508)
.+..+.|.||+|||||+.
T Consensus 30 ~Ge~vaI~GpSGSGKSTL 47 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTL 47 (226)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 689999999999999987
No 469
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.00 E-value=0.55 Score=47.89 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=26.5
Q ss_pred cCCceEEEEccCCCchHHHHHH---HH-HcCCCEEEEcchHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALS---RL-ESSSSGIYCGPLRLLAWE 116 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~---~l-~~~~~~i~l~P~r~La~q 116 (508)
...+++++.|.||||||.+.-. .+ ..+.++|+.=|.-+....
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHH
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHH
Confidence 5589999999999999987432 22 234456666777555443
No 470
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.96 E-value=1.3 Score=45.55 Aligned_cols=53 Identities=30% Similarity=0.234 Sum_probs=33.0
Q ss_pred CceEEEEccCCCchHHHHH---HHHH--cCCCEEEE--cchHHHHHHHHHHHH-hCCCcee
Q 010534 77 RKVILHVGPTNSGKTHQAL---SRLE--SSSSGIYC--GPLRLLAWEVAKRLN-KANVSCD 129 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~---~~l~--~~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~ 129 (508)
...++++|++|+|||+.+. .++. .+.+++++ =+.|..+.++.+.+. ..|+++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~ 159 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF 159 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE
Confidence 4688999999999999953 2232 34455544 345655555555443 4565543
No 471
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=87.88 E-value=0.57 Score=42.23 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=20.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
+++.++++||+|||||+.+-..+...
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36889999999999999876555543
No 472
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=87.80 E-value=0.59 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.3
Q ss_pred CCceEEEEccCCCchHHH--HHHHHHc
Q 010534 76 VRKVILHVGPTNSGKTHQ--ALSRLES 100 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~--~~~~l~~ 100 (508)
+++.+.+.||.|||||+. ++..++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 589999999999999998 3555444
No 473
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.76 E-value=0.41 Score=42.74 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=15.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
..++++.||||+|||..+
T Consensus 3 ~~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELA 20 (171)
T ss_dssp SEEEEEESSTTSSHHHHH
T ss_pred EEEEEEECCCCCCHHHHH
Confidence 357899999999999875
No 474
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=87.68 E-value=0.44 Score=42.74 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+++.|++|||||+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIG 20 (176)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5788999999999999975
No 475
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=87.65 E-value=0.36 Score=46.33 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
..++++.||+|+|||+.|
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 467899999999999996
No 476
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=87.58 E-value=1.2 Score=42.78 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=61.9
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcCCCEEEEcc--hHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEcc-e
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGP--LRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV-E 150 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P--~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~-e 150 (508)
..++.+++.|-.|.|||.++..+...++.++++-| .......+..-.. .++.. +..... .|. .
T Consensus 92 k~g~l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~-----~~~~~d--------~~~~~ 158 (297)
T COG2842 92 KTGSLVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILIICAAAFGAT-----DGTIND--------LTERL 158 (297)
T ss_pred hcCceEEEeccccchhHHHHHhhcccCccceeecCChhhHHHHHHHHHHHHHhccc-----chhHHH--------HHHHH
Confidence 35779999999999999999999999999988844 3333333332222 22111 110000 011 1
Q ss_pred eccccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccC
Q 010534 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196 (508)
Q Consensus 151 ~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~ 196 (508)
+-......+++++|||+.+. .+++.-.+.+..-..-.+.++|++
T Consensus 159 ~~~l~~~~~~iivDEA~~L~--~~ale~lr~i~d~~Gi~~vLvG~p 202 (297)
T COG2842 159 MIRLRDTVRLIIVDEADRLP--YRALEELRRIHDKTGIGVVLVGMP 202 (297)
T ss_pred HHHHccCcceeeeehhhccC--hHHHHHHHHHHHhhCceEEEecCh
Confidence 11125678899999999986 335444444433333344455554
No 477
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.51 E-value=0.44 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=18.9
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
++.-++++|+||||||+.....+
T Consensus 126 kRGLviiVGaTGSGKSTtmAaMi 148 (375)
T COG5008 126 KRGLVIIVGATGSGKSTTMAAMI 148 (375)
T ss_pred cCceEEEECCCCCCchhhHHHHh
Confidence 57889999999999998754444
No 478
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.45 E-value=0.66 Score=44.56 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.8
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
.++.+++.||+|+|||+.+...
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999997443
No 479
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.44 E-value=3.3 Score=40.93 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.6
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+-.++.||.|.||++.|.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 27 HGLLICGPEGLGKRAVAL 44 (319)
T ss_pred eeEeeECCCCCCHHHHHH
Confidence 468899999999999974
No 480
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=0.78 Score=49.17 Aligned_cols=88 Identities=26% Similarity=0.398 Sum_probs=50.7
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccC--CCcEEEE--cc-
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVD--GAKHRAV--TV- 149 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~--~~~~iv~--T~- 149 (508)
+++..++++||+|-|||. |+..+++.+.+-- +.+-.|+.+.... +-+-.++ -|
T Consensus 348 ~kGpILcLVGPPGVGKTS--------------------LgkSIA~al~Rkf--vR~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 348 LKGPILCLVGPPGVGKTS--------------------LGKSIAKALGRKF--VRISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred CCCcEEEEECCCCCCchh--------------------HHHHHHHHhCCCE--EEEecCccccHHHhccccccccccCCh
Confidence 368899999999999994 5666676665322 2222344333211 1111122 12
Q ss_pred eecccc----CCccEEEEccccccCCCCcChHHHHHHhcc
Q 010534 150 EMADVV----SDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185 (508)
Q Consensus 150 e~~~~l----~~~~~iViDEah~~~~~~rg~~~~~~ll~l 185 (508)
.+...+ ..--++++||+|.++...||-. ..+||..
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDP-aSALLEV 444 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDP-ASALLEV 444 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccCCCCCCh-HHHHHhh
Confidence 222222 3455899999999987667755 4444443
No 481
>PRK14532 adenylate kinase; Provisional
Probab=87.38 E-value=0.73 Score=41.67 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=22.7
Q ss_pred eEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHH
Q 010534 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL 113 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~L 113 (508)
++++.||+|||||+++-......+ ..++.+--.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-~~~is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-MVQLSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CeEEeCcHHH
Confidence 488999999999999765554433 3444443333
No 482
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=87.37 E-value=0.87 Score=45.31 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=43.4
Q ss_pred CCceEEEEccCCCchHHHHH--HHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 76 VRKVILHVGPTNSGKTHQAL--SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~--~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
.+..|+|.|++|+||++.|- ..... .....+.+....+..+..+.. -+|..-+..+|..... ...+
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~-lfG~~~g~~~ga~~~~----------~G~~ 89 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE-LFGHEAGAFTGAQKRH----------QGRF 89 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH-HhccccccccCccccc----------CCch
Confidence 47889999999999999863 32222 223344333222222222111 1244444444432211 0111
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
. ..+=+.+++||++.+..
T Consensus 90 ~-~a~gGtL~Ldei~~L~~ 107 (329)
T TIGR02974 90 E-RADGGTLFLDELATASL 107 (329)
T ss_pred h-hCCCCEEEeCChHhCCH
Confidence 1 12347899999999863
No 483
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=87.35 E-value=0.87 Score=41.35 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=17.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 2 ~g~~IvieG~~GsGKsT~~ 20 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQA 20 (195)
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3678999999999999996
No 484
>PRK14527 adenylate kinase; Provisional
Probab=87.30 E-value=0.62 Score=42.35 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=19.1
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
+++.+++.||+|||||+++-...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875544
No 485
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=87.26 E-value=2.3 Score=46.93 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=58.3
Q ss_pred EEEEe-eHHHHHHHHHHHHhcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc-cccccccc-cccEEEEc
Q 010534 242 CIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-AIGMGLNL-NISRIIFS 315 (508)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~---~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~-~~~~Gidi-pv~~VI~~ 315 (508)
+++.. |+.-+...++.+++.. +.++..+||+++..+|.++.+...+ |+.+|+|+|. .+...+.+ .+..||.-
T Consensus 313 ~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 313 AALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcccchhcccceEEEe
Confidence 34333 8888877777766542 2489999999999999999999998 8999999997 45556778 48888866
Q ss_pred cccc
Q 010534 316 TMKK 319 (508)
Q Consensus 316 ~~~~ 319 (508)
...+
T Consensus 391 E~Hr 394 (681)
T PRK10917 391 EQHR 394 (681)
T ss_pred chhh
Confidence 5544
No 486
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.23 E-value=0.48 Score=47.30 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=25.6
Q ss_pred CCceEEEEccCCCchHHHH--H-HHHHcCCCEEEEcchHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA--L-SRLESSSSGIYCGPLRLL 113 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~-~~l~~~~~~i~l~P~r~L 113 (508)
.+++++++|+||||||+.. + ..+....+.+++--+.+|
T Consensus 177 ~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 177 ARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 5789999999999999974 2 222333455665555444
No 487
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=87.14 E-value=0.83 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.5
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+..+.+.||+|||||+.+++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~ 40 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999987765
No 488
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.07 E-value=0.87 Score=42.80 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=28.3
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La 114 (508)
.++|+..||+|+|||..|-....+.+..++.+-..+|.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 58999999999999998765555556666665554443
No 489
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=87.05 E-value=0.46 Score=51.58 Aligned_cols=46 Identities=20% Similarity=-0.010 Sum_probs=34.9
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHc----CC--CEEEEcchHHHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLES----SS--SGIYCGPLRLLAWEVAKR 120 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~----~~--~~i~l~P~r~La~q~~~~ 120 (508)
.+.-++=|..+||+|||+++++.+.+ -| +-|++||+.+.-..+...
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~ 123 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLT 123 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHH
Confidence 34567788999999999999887754 12 458899999987665433
No 490
>PRK06696 uridine kinase; Validated
Probab=87.04 E-value=0.87 Score=42.53 Aligned_cols=19 Identities=37% Similarity=0.178 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
....+.|.|++|||||+.+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3567888999999999975
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=87.03 E-value=1.1 Score=47.55 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=37.4
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.+..+++.|++|+|||+.+.+.+. ++.+++|+.- -+-..++.+++..+|.+.
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~-e~~~~~i~~~~~~~g~~~ 327 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAF-EESRAQLIRNARSWGIDL 327 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHHcCCCh
Confidence 378899999999999999877663 3457777743 334566777777776543
No 492
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=86.99 E-value=0.45 Score=46.28 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+.++++.||+|+|||+.|
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999987
No 493
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=86.99 E-value=1 Score=50.22 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.||+|+|||+.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4678999999999999875
No 494
>PTZ00301 uridine kinase; Provisional
Probab=86.98 E-value=0.49 Score=43.73 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
...+-|.|++|||||+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla 20 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLS 20 (210)
T ss_pred CEEEEEECCCcCCHHHHH
Confidence 356789999999999976
No 495
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=86.93 E-value=0.49 Score=35.04 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=13.4
Q ss_pred EEEEccCCCchHHHH
Q 010534 80 ILHVGPTNSGKTHQA 94 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~ 94 (508)
+.+.|+.|||||+.+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999985
No 496
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.91 E-value=0.46 Score=50.85 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=20.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS 102 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~ 102 (508)
..+..+++||.|.|||+.|--....+|
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC
Confidence 478999999999999998755444433
No 497
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=86.91 E-value=0.62 Score=42.24 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=19.1
Q ss_pred CCceEEEEccCCCchHHHH--HHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~ 99 (508)
.....++.||+|+|||+.+ +.+++
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999994 55554
No 498
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.84 E-value=4.4 Score=45.97 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
....+.++.||+|+|||+.+
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCCCceEEEcCCCCCHHHHH
Confidence 35678999999999999986
No 499
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.78 E-value=0.24 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+.+++.||.|+|||+.+..
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARI 58 (367)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999998643
No 500
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=86.77 E-value=0.73 Score=41.39 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEccCCCchHHHHHHHHHcCCCEEEEcc
Q 010534 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGP 109 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P 109 (508)
.+++.|++|||||+++-.....-+ ..++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-FTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-CeEEEC
Confidence 378999999999998755443333 334443
Done!