Query 010534
Match_columns 508
No_of_seqs 445 out of 3300
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 100.0 3.1E-62 1.1E-66 523.2 45.3 446 58-504 136-592 (677)
2 2va8_A SSO2462, SKI2-type heli 100.0 2.7E-40 9.2E-45 362.4 24.6 407 41-465 15-521 (715)
3 2zj8_A DNA helicase, putative 100.0 4.2E-40 1.4E-44 360.9 24.7 408 41-465 8-505 (720)
4 2p6r_A Afuhel308 helicase; pro 100.0 1E-39 3.4E-44 356.8 25.0 327 41-381 10-411 (702)
5 2db3_A ATP-dependent RNA helic 100.0 2.1E-39 7.1E-44 334.6 24.8 295 40-357 62-405 (434)
6 2xau_A PRE-mRNA-splicing facto 100.0 8.6E-40 2.9E-44 357.2 13.0 411 40-479 78-550 (773)
7 2v1x_A ATP-dependent DNA helic 100.0 5.6E-37 1.9E-41 326.0 30.8 338 41-407 28-417 (591)
8 4f92_B U5 small nuclear ribonu 100.0 7.4E-38 2.5E-42 364.5 25.8 340 58-403 76-517 (1724)
9 1oyw_A RECQ helicase, ATP-depe 100.0 1.3E-37 4.5E-42 327.5 24.6 307 41-370 9-355 (523)
10 3pey_A ATP-dependent RNA helic 100.0 4.7E-37 1.6E-41 312.8 27.8 305 40-359 11-356 (395)
11 3eiq_A Eukaryotic initiation f 100.0 5.9E-38 2E-42 321.9 20.9 311 40-373 46-405 (414)
12 2i4i_A ATP-dependent RNA helic 100.0 1.3E-37 4.6E-42 319.6 23.4 298 40-359 21-383 (417)
13 2j0s_A ATP-dependent RNA helic 100.0 1E-37 3.6E-42 319.8 22.4 312 40-374 43-402 (410)
14 1s2m_A Putative ATP-dependent 100.0 3.5E-37 1.2E-41 314.9 25.9 298 40-359 27-365 (400)
15 3fht_A ATP-dependent RNA helic 100.0 7.9E-37 2.7E-41 313.2 28.0 321 40-374 31-399 (412)
16 1hv8_A Putative ATP-dependent 100.0 6.3E-37 2.2E-41 308.7 25.0 298 40-359 12-345 (367)
17 1xti_A Probable ATP-dependent 100.0 5.4E-37 1.8E-41 312.3 23.4 297 40-359 14-357 (391)
18 2z0m_A 337AA long hypothetical 100.0 6E-37 2.1E-41 305.3 21.8 299 41-365 1-329 (337)
19 3sqw_A ATP-dependent RNA helic 100.0 1.9E-36 6.6E-41 323.9 26.5 309 39-366 26-406 (579)
20 4f92_B U5 small nuclear ribonu 100.0 1.1E-36 3.7E-41 354.7 26.3 324 39-372 909-1322(1724)
21 3i5x_A ATP-dependent RNA helic 100.0 2.1E-36 7.1E-41 323.0 26.0 308 40-366 78-457 (563)
22 2xgj_A ATP-dependent RNA helic 100.0 2.1E-36 7.3E-41 338.3 26.4 320 57-385 83-526 (1010)
23 4a4z_A Antiviral helicase SKI2 100.0 1.1E-36 3.9E-41 340.5 23.7 310 57-374 36-510 (997)
24 3fmp_B ATP-dependent RNA helic 100.0 4.8E-37 1.6E-41 321.4 17.1 305 40-359 98-446 (479)
25 3l9o_A ATP-dependent RNA helic 100.0 5E-37 1.7E-41 346.2 18.1 320 58-386 181-625 (1108)
26 1fuu_A Yeast initiation factor 100.0 2.9E-37 1E-41 314.5 9.2 297 40-359 27-366 (394)
27 3fho_A ATP-dependent RNA helic 100.0 1.6E-35 5.5E-40 311.4 16.2 320 41-375 126-491 (508)
28 2jlq_A Serine protease subunit 100.0 1.8E-33 6.3E-38 291.1 17.7 284 58-358 1-310 (451)
29 3oiy_A Reverse gyrase helicase 100.0 1.5E-33 5.3E-38 289.3 16.8 284 45-357 10-363 (414)
30 3o8b_A HCV NS3 protease/helica 100.0 1.5E-32 5.2E-37 290.5 20.8 272 62-359 218-514 (666)
31 2whx_A Serine protease/ntpase/ 100.0 2.1E-32 7E-37 291.9 20.0 280 60-357 170-476 (618)
32 2ykg_A Probable ATP-dependent 100.0 9.4E-33 3.2E-37 302.1 13.5 283 57-359 9-516 (696)
33 4a2p_A RIG-I, retinoic acid in 100.0 5.5E-32 1.9E-36 288.1 15.1 282 58-359 4-508 (556)
34 3tbk_A RIG-I helicase domain; 100.0 1.6E-31 5.5E-36 284.3 18.4 280 60-359 3-507 (555)
35 4gl2_A Interferon-induced heli 100.0 1.2E-31 4.2E-36 293.4 16.5 281 60-358 6-519 (699)
36 2z83_A Helicase/nucleoside tri 100.0 7.5E-32 2.6E-36 279.5 13.0 265 75-358 19-312 (459)
37 1wp9_A ATP-dependent RNA helic 100.0 4.6E-31 1.6E-35 275.5 19.0 281 60-359 8-475 (494)
38 2wv9_A Flavivirin protease NS2 100.0 1.3E-31 4.5E-36 287.5 13.9 277 61-356 215-530 (673)
39 1yks_A Genome polyprotein [con 100.0 2E-31 6.9E-36 274.6 13.6 263 75-356 6-296 (440)
40 1gm5_A RECG; helicase, replica 100.0 1.6E-31 5.6E-36 290.1 12.9 290 43-357 356-695 (780)
41 4a2q_A RIG-I, retinoic acid in 100.0 6.2E-31 2.1E-35 291.0 17.8 283 57-359 244-749 (797)
42 2fwr_A DNA repair protein RAD2 100.0 2.2E-31 7.4E-36 278.0 13.2 272 61-359 93-454 (472)
43 2v6i_A RNA helicase; membrane, 100.0 7.2E-31 2.4E-35 269.9 15.2 264 76-356 1-288 (431)
44 2oca_A DAR protein, ATP-depend 100.0 6.9E-31 2.4E-35 276.9 13.8 281 59-357 111-456 (510)
45 2eyq_A TRCF, transcription-rep 100.0 1.7E-29 5.8E-34 286.6 22.7 283 58-359 601-922 (1151)
46 1gku_B Reverse gyrase, TOP-RG; 100.0 7.8E-30 2.7E-34 287.7 18.0 244 57-318 54-352 (1054)
47 4ddu_A Reverse gyrase; topoiso 100.0 3.3E-30 1.1E-34 290.6 14.8 246 58-319 76-388 (1104)
48 4a2w_A RIG-I, retinoic acid in 100.0 7.1E-30 2.4E-34 285.7 17.2 282 58-359 245-749 (936)
49 3h1t_A Type I site-specific re 99.9 1.7E-27 5.9E-32 255.2 18.0 281 60-356 177-558 (590)
50 1tf5_A Preprotein translocase 99.9 3.2E-27 1.1E-31 252.1 18.3 277 58-356 81-542 (844)
51 3dmq_A RNA polymerase-associat 99.9 3E-26 1E-30 256.7 18.7 295 60-367 152-625 (968)
52 2fsf_A Preprotein translocase 99.9 2.1E-25 7.1E-30 237.5 16.7 100 240-356 442-580 (853)
53 1z63_A Helicase of the SNF2/RA 99.9 6.1E-25 2.1E-29 230.8 17.9 285 60-359 36-453 (500)
54 1nkt_A Preprotein translocase 99.9 1.4E-24 4.8E-29 231.4 20.6 278 57-356 108-614 (922)
55 1z3i_X Similar to RAD54-like; 99.9 6E-22 2.1E-26 213.4 21.4 109 240-359 417-528 (644)
56 3mwy_W Chromo domain-containin 99.9 6.7E-22 2.3E-26 218.3 19.6 285 60-359 235-684 (800)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 9.3E-21 3.2E-25 211.1 18.3 283 59-358 269-708 (1038)
58 1c4o_A DNA nucleotide excision 99.8 3.7E-19 1.3E-23 191.6 25.9 111 239-360 439-551 (664)
59 3eaq_A Heat resistant RNA depe 99.8 9.3E-21 3.2E-25 175.5 9.1 108 237-359 29-138 (212)
60 3iuy_A Probable ATP-dependent 99.8 5.1E-20 1.7E-24 172.7 12.6 162 40-208 26-218 (228)
61 2hjv_A ATP-dependent RNA helic 99.8 8.9E-20 3E-24 161.7 13.4 109 236-359 32-142 (163)
62 3jux_A Protein translocase sub 99.8 1.2E-19 4.2E-24 189.6 15.9 101 239-356 474-584 (822)
63 2rb4_A ATP-dependent RNA helic 99.8 2.2E-19 7.5E-24 161.2 13.7 129 236-373 31-165 (175)
64 1fuk_A Eukaryotic initiation f 99.8 2.2E-19 7.5E-24 159.5 13.0 123 236-373 27-155 (165)
65 3fe2_A Probable ATP-dependent 99.8 1.5E-19 5E-24 171.2 12.5 163 40-209 35-228 (242)
66 2pl3_A Probable ATP-dependent 99.8 5.9E-19 2E-23 166.4 14.2 162 41-209 32-223 (236)
67 3i32_A Heat resistant RNA depe 99.8 6.5E-20 2.2E-24 178.0 7.7 108 237-359 26-135 (300)
68 3ly5_A ATP-dependent RNA helic 99.8 1.2E-19 4E-24 173.9 9.2 161 41-208 61-252 (262)
69 1t5i_A C_terminal domain of A 99.8 3.4E-19 1.2E-23 159.3 11.6 109 235-358 27-137 (172)
70 1vec_A ATP-dependent RNA helic 99.8 5.4E-19 1.8E-23 162.9 12.9 161 40-207 9-196 (206)
71 3ber_A Probable ATP-dependent 99.8 4.7E-19 1.6E-23 168.4 12.8 162 40-208 49-237 (249)
72 2p6n_A ATP-dependent RNA helic 99.8 3E-19 1E-23 162.4 10.5 106 238-358 53-160 (191)
73 3fmo_B ATP-dependent RNA helic 99.8 9.5E-19 3.2E-23 170.8 14.5 164 40-209 98-288 (300)
74 2d7d_A Uvrabc system protein B 99.8 4.6E-18 1.6E-22 183.0 20.8 110 239-359 445-556 (661)
75 2gxq_A Heat resistant RNA depe 99.8 8.5E-19 2.9E-23 161.6 12.5 162 41-209 8-196 (207)
76 1q0u_A Bstdead; DEAD protein, 99.8 4.7E-19 1.6E-23 165.0 10.5 161 40-207 10-200 (219)
77 2oxc_A Probable ATP-dependent 99.8 8.4E-19 2.9E-23 164.6 11.4 159 40-206 30-216 (230)
78 2jgn_A DBX, DDX3, ATP-dependen 99.8 9E-19 3.1E-23 158.5 11.0 106 239-359 46-153 (185)
79 3dkp_A Probable ATP-dependent 99.8 1.1E-18 3.6E-23 165.6 11.6 163 40-209 35-231 (245)
80 1qde_A EIF4A, translation init 99.8 1.5E-18 5.2E-23 162.1 12.2 161 40-208 20-206 (224)
81 3bor_A Human initiation factor 99.8 1.1E-18 3.9E-23 164.5 11.0 161 40-208 36-224 (237)
82 1wrb_A DJVLGB; RNA helicase, D 99.8 1.7E-18 6E-23 164.9 10.6 162 41-209 30-230 (253)
83 1t6n_A Probable ATP-dependent 99.7 2E-18 7E-23 160.8 9.3 125 40-171 20-172 (220)
84 2yjt_D ATP-dependent RNA helic 99.6 1.7E-19 5.8E-24 161.1 0.0 107 238-359 29-137 (170)
85 2ipc_A Preprotein translocase 99.6 5.4E-15 1.9E-19 157.5 17.6 109 57-170 76-215 (997)
86 3b6e_A Interferon-induced heli 99.6 1.3E-15 4.3E-20 141.0 8.3 112 58-171 30-176 (216)
87 2vl7_A XPD; helicase, unknown 99.6 2E-15 6.9E-20 159.1 9.1 75 58-133 5-83 (540)
88 1rif_A DAR protein, DNA helica 99.5 1.4E-14 4.7E-19 140.1 9.7 122 60-187 112-251 (282)
89 2fz4_A DNA repair protein RAD2 99.5 5.8E-14 2E-18 131.9 11.9 108 60-172 92-207 (237)
90 3llm_A ATP-dependent RNA helic 99.5 2.6E-14 8.9E-19 134.3 9.2 108 60-169 60-188 (235)
91 1z5z_A Helicase of the SNF2/RA 99.5 1.3E-13 4.4E-18 132.0 9.2 108 239-359 112-224 (271)
92 3crv_A XPD/RAD3 related DNA he 99.0 2.4E-10 8.3E-15 120.7 7.7 73 61-133 3-83 (551)
93 4b3f_X DNA-binding protein smu 98.3 1.8E-06 6.2E-11 92.8 9.9 68 60-128 188-260 (646)
94 2gk6_A Regulator of nonsense t 98.3 4.2E-06 1.4E-10 89.4 12.2 68 59-128 178-251 (624)
95 2xzl_A ATP-dependent helicase 98.2 4.3E-06 1.5E-10 91.5 11.4 68 59-128 358-431 (802)
96 1w36_D RECD, exodeoxyribonucle 98.2 4.3E-06 1.5E-10 89.0 11.1 59 63-123 151-218 (608)
97 3upu_A ATP-dependent DNA helic 98.1 1.2E-05 4E-10 82.8 11.3 132 58-198 22-166 (459)
98 2wjy_A Regulator of nonsense t 98.1 1.3E-05 4.5E-10 87.5 11.4 68 59-128 354-427 (800)
99 3vkw_A Replicase large subunit 98.0 1.2E-05 4.3E-10 80.8 7.9 107 76-199 160-272 (446)
100 4a15_A XPD helicase, ATP-depen 97.9 1.1E-05 3.7E-10 86.0 5.8 110 239-358 448-584 (620)
101 3e1s_A Exodeoxyribonuclease V, 97.8 6.7E-05 2.3E-09 79.0 11.4 121 61-197 189-316 (574)
102 2j9r_A Thymidine kinase; TK1, 97.4 0.00032 1.1E-08 63.4 7.9 85 75-171 26-115 (214)
103 1xx6_A Thymidine kinase; NESG, 97.2 0.00018 6E-09 64.4 3.3 37 75-111 6-46 (191)
104 2orw_A Thymidine kinase; TMTK, 97.2 0.00059 2E-08 60.6 6.5 36 76-111 2-41 (184)
105 2b8t_A Thymidine kinase; deoxy 96.9 0.0011 3.6E-08 60.8 6.1 37 75-111 10-50 (223)
106 2orv_A Thymidine kinase; TP4A 96.9 0.00036 1.2E-08 63.6 2.9 79 76-170 18-103 (234)
107 3e2i_A Thymidine kinase; Zn-bi 96.9 0.002 6.8E-08 58.1 7.4 84 75-171 26-115 (219)
108 3ec2_A DNA replication protein 96.8 0.0011 3.7E-08 58.5 5.0 73 76-170 37-113 (180)
109 2kjq_A DNAA-related protein; s 96.7 0.0029 9.8E-08 54.0 6.9 19 76-94 35-53 (149)
110 3bos_A Putative DNA replicatio 96.6 0.0043 1.5E-07 56.9 8.1 20 76-95 51-70 (242)
111 1w4r_A Thymidine kinase; type 96.5 0.0015 5.1E-08 58.1 3.4 80 73-169 16-103 (195)
112 2w58_A DNAI, primosome compone 96.3 0.0034 1.2E-07 56.3 5.0 17 78-94 55-71 (202)
113 1l8q_A Chromosomal replication 96.0 0.007 2.4E-07 58.7 5.9 72 77-171 37-112 (324)
114 2p65_A Hypothetical protein PF 95.7 0.024 8.3E-07 49.4 7.6 20 76-95 42-61 (187)
115 2qgz_A Helicase loader, putati 95.7 0.0073 2.5E-07 58.3 4.1 70 77-169 152-226 (308)
116 3lfu_A DNA helicase II; SF1 he 95.6 0.0073 2.5E-07 64.6 4.4 61 59-123 7-76 (647)
117 1jbk_A CLPB protein; beta barr 95.5 0.039 1.3E-06 48.1 8.3 20 76-95 42-61 (195)
118 4a15_A XPD helicase, ATP-depen 95.3 0.025 8.5E-07 60.1 7.1 48 76-123 21-73 (620)
119 2qby_B CDC6 homolog 3, cell di 95.3 0.019 6.5E-07 56.9 5.9 19 77-95 45-63 (384)
120 2z4s_A Chromosomal replication 95.2 0.02 6.8E-07 58.1 5.7 72 77-171 130-208 (440)
121 3pfi_A Holliday junction ATP-d 95.0 0.031 1.1E-06 54.3 6.4 22 77-98 55-76 (338)
122 3eie_A Vacuolar protein sortin 95.0 0.052 1.8E-06 52.5 7.9 30 77-106 51-80 (322)
123 2bjv_A PSP operon transcriptio 94.9 0.026 8.8E-07 52.9 5.3 20 76-95 28-47 (265)
124 2qby_A CDC6 homolog 1, cell di 94.5 0.088 3E-06 51.8 8.2 20 76-95 44-63 (386)
125 1d2n_A N-ethylmaleimide-sensit 94.3 0.042 1.5E-06 51.6 5.3 22 76-97 63-84 (272)
126 2qp9_X Vacuolar protein sortin 94.3 0.089 3E-06 51.6 7.7 30 77-106 84-113 (355)
127 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.11 3.6E-06 50.3 8.1 23 77-99 45-67 (322)
128 1hqc_A RUVB; extended AAA-ATPa 94.1 0.034 1.2E-06 53.6 4.3 21 77-97 38-58 (324)
129 2v1u_A Cell division control p 94.1 0.063 2.1E-06 52.9 6.2 20 76-95 43-62 (387)
130 3crv_A XPD/RAD3 related DNA he 94.0 0.12 4.1E-06 54.0 8.3 110 238-358 392-531 (551)
131 1ofh_A ATP-dependent HSL prote 94.0 0.031 1.1E-06 53.4 3.5 20 76-95 49-68 (310)
132 2gno_A DNA polymerase III, gam 93.9 0.12 4.2E-06 49.4 7.7 22 77-98 18-39 (305)
133 3exa_A TRNA delta(2)-isopenten 93.8 0.049 1.7E-06 52.1 4.4 25 76-100 2-26 (322)
134 2o0j_A Terminase, DNA packagin 93.7 0.21 7.3E-06 49.3 9.1 108 61-171 163-287 (385)
135 1pjr_A PCRA; DNA repair, DNA r 93.7 0.051 1.7E-06 58.9 5.0 61 59-123 9-78 (724)
136 1uaa_A REP helicase, protein ( 93.7 0.044 1.5E-06 58.9 4.4 58 62-123 3-69 (673)
137 1sxj_A Activator 1 95 kDa subu 93.6 0.074 2.5E-06 55.1 5.8 26 77-102 77-102 (516)
138 2zpa_A Uncharacterized protein 93.5 0.037 1.3E-06 58.5 3.5 91 61-170 175-268 (671)
139 3kl4_A SRP54, signal recogniti 93.4 0.15 5.2E-06 51.2 7.5 88 76-170 96-192 (433)
140 3dm5_A SRP54, signal recogniti 93.3 0.11 3.9E-06 52.2 6.5 53 77-129 100-159 (443)
141 3u4q_A ATP-dependent helicase/ 93.2 0.064 2.2E-06 61.7 4.9 60 60-123 9-79 (1232)
142 3cpe_A Terminase, DNA packagin 93.0 0.27 9.2E-06 51.8 9.1 108 61-171 163-287 (592)
143 3a8t_A Adenylate isopentenyltr 93.0 0.072 2.5E-06 51.5 4.2 23 77-99 40-62 (339)
144 2qmh_A HPR kinase/phosphorylas 93.0 0.069 2.4E-06 47.4 3.8 27 75-101 32-58 (205)
145 1fnn_A CDC6P, cell division co 92.9 0.25 8.7E-06 48.6 8.4 17 79-95 46-62 (389)
146 2zan_A Vacuolar protein sortin 92.8 0.19 6.6E-06 50.8 7.4 24 76-99 166-189 (444)
147 1a5t_A Delta prime, HOLB; zinc 92.6 0.24 8.2E-06 48.0 7.6 18 78-95 25-42 (334)
148 3pvs_A Replication-associated 92.6 0.34 1.2E-05 49.0 8.9 22 77-98 50-71 (447)
149 1kgd_A CASK, peripheral plasma 92.5 0.064 2.2E-06 47.0 2.9 20 75-94 3-22 (180)
150 3u61_B DNA polymerase accessor 92.5 0.086 2.9E-06 50.8 4.1 21 78-98 49-69 (324)
151 2px0_A Flagellar biosynthesis 92.5 0.16 5.5E-06 48.4 6.0 83 76-169 104-194 (296)
152 1jr3_A DNA polymerase III subu 92.4 0.1 3.5E-06 51.2 4.6 18 78-95 39-56 (373)
153 2dr3_A UPF0273 protein PH0284; 92.0 0.14 4.6E-06 47.0 4.7 51 76-127 22-76 (247)
154 1sxj_E Activator 1 40 kDa subu 92.0 0.15 5.3E-06 49.6 5.4 15 80-94 39-53 (354)
155 3n70_A Transport activator; si 91.8 0.08 2.7E-06 44.5 2.6 20 76-95 23-42 (145)
156 3foz_A TRNA delta(2)-isopenten 91.8 0.13 4.4E-06 49.1 4.3 23 77-99 10-32 (316)
157 1qhx_A CPT, protein (chloramph 91.6 0.24 8.2E-06 42.8 5.6 23 76-98 2-24 (178)
158 3tau_A Guanylate kinase, GMP k 91.4 0.098 3.4E-06 46.9 2.9 22 76-97 7-28 (208)
159 3co5_A Putative two-component 91.3 0.085 2.9E-06 44.2 2.3 20 76-95 26-45 (143)
160 1c9k_A COBU, adenosylcobinamid 91.2 0.11 3.9E-06 45.4 3.0 43 80-122 2-44 (180)
161 1kht_A Adenylate kinase; phosp 91.1 0.1 3.5E-06 45.7 2.7 19 76-94 2-20 (192)
162 2eyu_A Twitching motility prot 90.9 0.11 3.7E-06 48.6 2.8 20 75-94 23-42 (261)
163 2zts_A Putative uncharacterize 90.7 0.17 5.7E-06 46.5 3.9 50 76-126 29-83 (251)
164 3trf_A Shikimate kinase, SK; a 90.7 0.12 4.1E-06 45.1 2.7 20 77-96 5-24 (185)
165 3tr0_A Guanylate kinase, GMP k 90.5 0.13 4.5E-06 45.7 2.9 19 76-94 6-24 (205)
166 3vaa_A Shikimate kinase, SK; s 90.5 0.13 4.6E-06 45.6 2.9 20 76-95 24-43 (199)
167 1zp6_A Hypothetical protein AT 90.5 0.13 4.4E-06 45.1 2.8 20 75-94 7-26 (191)
168 3cmu_A Protein RECA, recombina 90.4 0.19 6.4E-06 59.6 4.6 79 76-170 1426-1518(2050)
169 2z43_A DNA repair and recombin 90.3 0.25 8.4E-06 47.7 4.9 52 76-127 106-168 (324)
170 3ney_A 55 kDa erythrocyte memb 90.3 0.18 6.2E-06 44.8 3.6 22 75-96 17-38 (197)
171 3crm_A TRNA delta(2)-isopenten 90.3 0.2 7E-06 48.1 4.1 22 77-98 5-26 (323)
172 2oap_1 GSPE-2, type II secreti 90.1 0.14 4.6E-06 52.9 2.9 19 76-94 259-277 (511)
173 2j41_A Guanylate kinase; GMP, 90.1 0.15 5.2E-06 45.3 2.9 20 75-94 4-23 (207)
174 1tev_A UMP-CMP kinase; ploop, 90.0 0.15 5E-06 44.8 2.7 21 76-96 2-22 (196)
175 3lw7_A Adenylate kinase relate 90.0 0.25 8.7E-06 42.2 4.2 26 78-104 2-27 (179)
176 1lvg_A Guanylate kinase, GMP k 90.0 0.13 4.5E-06 45.7 2.3 19 76-94 3-21 (198)
177 3umf_A Adenylate kinase; rossm 89.9 0.15 5.3E-06 46.1 2.8 23 76-98 28-50 (217)
178 2ze6_A Isopentenyl transferase 89.9 0.17 5.9E-06 46.9 3.2 18 78-95 2-19 (253)
179 4gp7_A Metallophosphoesterase; 89.8 0.16 5.5E-06 43.9 2.8 21 76-96 8-28 (171)
180 2ehv_A Hypothetical protein PH 89.7 0.32 1.1E-05 44.5 4.9 32 76-107 29-65 (251)
181 3cmw_A Protein RECA, recombina 89.7 0.24 8.2E-06 57.9 4.8 79 76-170 1430-1522(1706)
182 2qor_A Guanylate kinase; phosp 89.5 0.16 5.5E-06 45.3 2.6 20 76-95 11-30 (204)
183 3a00_A Guanylate kinase, GMP k 89.5 0.16 5.4E-06 44.6 2.4 18 77-94 1-18 (186)
184 3iij_A Coilin-interacting nucl 89.4 0.18 6E-06 43.9 2.7 22 75-96 9-30 (180)
185 3d3q_A TRNA delta(2)-isopenten 89.2 0.26 8.9E-06 47.7 4.0 21 78-98 8-28 (340)
186 2v3c_C SRP54, signal recogniti 89.2 0.22 7.4E-06 50.2 3.5 87 78-170 100-193 (432)
187 3cf0_A Transitional endoplasmi 89.1 0.58 2E-05 44.5 6.4 34 76-109 48-81 (301)
188 1vma_A Cell division protein F 89.1 0.72 2.5E-05 44.0 7.0 87 76-168 103-197 (306)
189 1knq_A Gluconate kinase; ALFA/ 89.1 0.2 6.9E-06 43.2 2.8 19 76-94 7-25 (175)
190 1y63_A LMAJ004144AAA protein; 89.0 0.21 7E-06 43.8 2.8 20 76-95 9-28 (184)
191 2cvh_A DNA repair and recombin 89.0 0.35 1.2E-05 43.3 4.5 32 76-107 19-51 (220)
192 1ly1_A Polynucleotide kinase; 89.0 0.2 6.8E-06 43.3 2.7 21 78-98 3-23 (181)
193 3cm0_A Adenylate kinase; ATP-b 88.9 0.18 6E-06 44.0 2.4 21 76-96 3-23 (186)
194 1ak2_A Adenylate kinase isoenz 88.8 0.21 7.3E-06 45.5 2.9 27 70-96 9-35 (233)
195 1kag_A SKI, shikimate kinase I 88.7 0.19 6.6E-06 43.2 2.5 18 77-94 4-21 (173)
196 4eun_A Thermoresistant glucoki 88.7 0.22 7.6E-06 44.2 2.9 19 76-94 28-46 (200)
197 3eph_A TRNA isopentenyltransfe 88.7 0.25 8.6E-06 48.9 3.5 22 77-98 2-23 (409)
198 3kb2_A SPBC2 prophage-derived 88.6 0.21 7E-06 42.8 2.5 18 79-96 3-20 (173)
199 1n0w_A DNA repair protein RAD5 88.4 0.4 1.4E-05 43.6 4.6 24 76-99 23-46 (243)
200 2rhm_A Putative kinase; P-loop 88.4 0.24 8E-06 43.4 2.8 20 76-95 4-23 (193)
201 1p9r_A General secretion pathw 88.4 0.33 1.1E-05 48.6 4.1 20 75-94 165-184 (418)
202 2plr_A DTMP kinase, probable t 88.3 0.24 8.3E-06 44.1 2.9 19 76-94 3-21 (213)
203 2gza_A Type IV secretion syste 88.3 0.2 6.8E-06 49.2 2.5 19 76-94 174-192 (361)
204 2ewv_A Twitching motility prot 88.3 0.21 7.3E-06 49.2 2.7 20 75-94 134-153 (372)
205 2i1q_A DNA repair and recombin 88.3 0.3 1E-05 47.0 3.8 24 76-99 97-120 (322)
206 3jvv_A Twitching mobility prot 88.3 0.22 7.6E-06 48.7 2.8 20 75-94 121-140 (356)
207 2w0m_A SSO2452; RECA, SSPF, un 88.2 0.47 1.6E-05 42.7 4.9 32 76-107 22-57 (235)
208 3uie_A Adenylyl-sulfate kinase 88.2 0.25 8.4E-06 43.9 2.9 20 75-94 23-42 (200)
209 3pxi_A Negative regulator of g 88.1 0.75 2.6E-05 50.0 7.1 16 79-94 523-538 (758)
210 3te6_A Regulatory protein SIR3 88.0 0.3 1E-05 46.9 3.5 27 68-94 36-62 (318)
211 1nks_A Adenylate kinase; therm 88.0 0.7 2.4E-05 40.2 5.7 17 78-94 2-18 (194)
212 1z6g_A Guanylate kinase; struc 87.9 0.24 8.3E-06 44.7 2.6 19 76-94 22-40 (218)
213 2c95_A Adenylate kinase 1; tra 87.9 0.26 8.9E-06 43.3 2.8 21 76-96 8-28 (196)
214 2v9p_A Replication protein E1; 87.7 0.3 1E-05 46.6 3.3 29 76-105 125-155 (305)
215 1qvr_A CLPB protein; coiled co 87.7 0.71 2.4E-05 50.9 6.7 19 76-94 190-208 (854)
216 1ex7_A Guanylate kinase; subst 87.7 0.41 1.4E-05 42.1 3.8 21 78-98 2-22 (186)
217 3c8u_A Fructokinase; YP_612366 87.7 0.26 8.9E-06 44.1 2.7 20 75-94 20-39 (208)
218 2bdt_A BH3686; alpha-beta prot 87.5 0.46 1.6E-05 41.5 4.2 20 77-96 2-21 (189)
219 1znw_A Guanylate kinase, GMP k 87.5 0.29 1E-05 43.7 2.9 20 75-94 18-37 (207)
220 2v54_A DTMP kinase, thymidylat 87.3 0.31 1E-05 43.1 2.9 20 76-95 3-22 (204)
221 1e9r_A Conjugal transfer prote 87.3 0.44 1.5E-05 48.0 4.5 41 75-115 51-95 (437)
222 3e70_C DPA, signal recognition 87.2 1 3.4E-05 43.5 6.7 52 76-127 128-186 (328)
223 3sr0_A Adenylate kinase; phosp 87.2 0.28 9.6E-06 43.9 2.6 21 79-99 2-22 (206)
224 3hr8_A Protein RECA; alpha and 87.2 0.39 1.3E-05 46.9 3.7 34 76-109 60-97 (356)
225 3asz_A Uridine kinase; cytidin 87.0 0.31 1.1E-05 43.5 2.8 19 76-94 5-23 (211)
226 3lnc_A Guanylate kinase, GMP k 87.0 0.21 7.2E-06 45.5 1.7 19 76-94 26-44 (231)
227 1zuh_A Shikimate kinase; alpha 86.9 0.31 1.1E-05 41.7 2.6 19 77-95 7-25 (168)
228 1v5w_A DMC1, meiotic recombina 86.8 0.51 1.7E-05 45.9 4.4 52 76-127 121-183 (343)
229 2pt7_A CAG-ALFA; ATPase, prote 86.5 0.29 9.8E-06 47.4 2.4 19 76-94 170-188 (330)
230 1s96_A Guanylate kinase, GMP k 86.5 0.35 1.2E-05 43.7 2.9 19 76-94 15-33 (219)
231 3syl_A Protein CBBX; photosynt 86.5 0.33 1.1E-05 46.2 2.8 19 76-94 66-84 (309)
232 3t61_A Gluconokinase; PSI-biol 86.4 0.3 1E-05 43.3 2.3 19 77-95 18-36 (202)
233 1gvn_B Zeta; postsegregational 86.4 0.46 1.6E-05 45.0 3.7 24 76-99 32-55 (287)
234 2bwj_A Adenylate kinase 5; pho 86.3 0.34 1.2E-05 42.6 2.6 20 77-96 12-31 (199)
235 2qz4_A Paraplegin; AAA+, SPG7, 86.3 0.36 1.2E-05 44.6 2.9 21 76-96 38-58 (262)
236 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.52 1.8E-05 39.7 3.6 23 77-99 23-47 (149)
237 3h4m_A Proteasome-activating n 86.2 0.67 2.3E-05 43.4 4.8 23 76-98 50-72 (285)
238 2yvu_A Probable adenylyl-sulfa 86.2 0.38 1.3E-05 41.9 2.9 20 75-94 11-30 (186)
239 2pez_A Bifunctional 3'-phospho 86.1 0.39 1.3E-05 41.6 2.9 19 76-94 4-22 (179)
240 2qt1_A Nicotinamide riboside k 86.1 0.37 1.3E-05 42.8 2.8 20 76-95 20-39 (207)
241 1zd8_A GTP:AMP phosphotransfer 86.1 0.63 2.2E-05 42.1 4.4 22 77-98 7-28 (227)
242 1aky_A Adenylate kinase; ATP:A 86.0 0.38 1.3E-05 43.3 2.9 20 77-96 4-23 (220)
243 1cke_A CK, MSSA, protein (cyti 86.0 0.36 1.2E-05 43.5 2.7 18 77-94 5-22 (227)
244 2zr9_A Protein RECA, recombina 86.0 0.72 2.5E-05 44.9 5.0 32 76-107 60-95 (349)
245 1lv7_A FTSH; alpha/beta domain 85.9 0.37 1.3E-05 44.6 2.7 19 77-95 45-63 (257)
246 3fb4_A Adenylate kinase; psych 85.8 0.36 1.2E-05 43.2 2.6 19 79-97 2-20 (216)
247 2wwf_A Thymidilate kinase, put 85.8 0.41 1.4E-05 42.6 2.9 19 76-94 9-27 (212)
248 2vli_A Antibiotic resistance p 85.8 0.28 9.7E-06 42.5 1.8 22 76-97 4-25 (183)
249 3b9p_A CG5977-PA, isoform A; A 85.7 0.73 2.5E-05 43.5 4.8 23 76-98 53-75 (297)
250 2cdn_A Adenylate kinase; phosp 85.7 0.42 1.4E-05 42.3 2.9 21 76-96 19-39 (201)
251 1qf9_A UMP/CMP kinase, protein 85.6 0.4 1.4E-05 41.8 2.7 21 77-97 6-26 (194)
252 1qvr_A CLPB protein; coiled co 85.6 0.6 2E-05 51.5 4.6 17 78-94 589-605 (854)
253 4ag6_A VIRB4 ATPase, type IV s 85.5 0.71 2.4E-05 45.7 4.8 37 76-112 34-74 (392)
254 3b9q_A Chloroplast SRP recepto 85.5 0.82 2.8E-05 43.5 5.0 32 76-107 99-134 (302)
255 1e6c_A Shikimate kinase; phosp 85.3 0.37 1.3E-05 41.3 2.3 18 78-95 3-20 (173)
256 1ukz_A Uridylate kinase; trans 85.3 0.79 2.7E-05 40.4 4.6 22 77-98 15-36 (203)
257 1zak_A Adenylate kinase; ATP:A 85.3 0.39 1.3E-05 43.3 2.5 20 77-96 5-24 (222)
258 3dl0_A Adenylate kinase; phosp 85.1 0.63 2.2E-05 41.6 3.9 24 79-102 2-25 (216)
259 1pzn_A RAD51, DNA repair and r 85.0 0.71 2.4E-05 45.0 4.4 23 76-98 130-152 (349)
260 1uf9_A TT1252 protein; P-loop, 84.9 0.47 1.6E-05 41.8 2.9 23 76-98 7-29 (203)
261 1nn5_A Similar to deoxythymidy 84.9 0.47 1.6E-05 42.2 2.9 19 76-94 8-26 (215)
262 2iyv_A Shikimate kinase, SK; t 84.8 0.42 1.4E-05 41.6 2.4 19 78-96 3-21 (184)
263 1via_A Shikimate kinase; struc 84.8 0.41 1.4E-05 41.3 2.3 17 79-95 6-22 (175)
264 1tue_A Replication protein E1; 84.5 0.5 1.7E-05 42.1 2.8 21 77-97 58-78 (212)
265 1u94_A RECA protein, recombina 84.5 0.9 3.1E-05 44.3 4.9 33 76-108 62-98 (356)
266 4a74_A DNA repair and recombin 84.4 0.6 2E-05 42.0 3.4 22 76-97 24-45 (231)
267 1ixz_A ATP-dependent metallopr 84.4 1.1 3.7E-05 41.2 5.3 18 78-95 50-67 (254)
268 1rj9_A FTSY, signal recognitio 84.4 0.91 3.1E-05 43.3 4.8 32 76-107 101-136 (304)
269 3tqf_A HPR(Ser) kinase; transf 84.3 0.86 3E-05 39.4 4.1 27 75-101 14-40 (181)
270 3be4_A Adenylate kinase; malar 84.3 0.49 1.7E-05 42.5 2.7 19 77-95 5-23 (217)
271 2jaq_A Deoxyguanosine kinase; 84.3 0.48 1.6E-05 41.8 2.6 17 79-95 2-18 (205)
272 3hws_A ATP-dependent CLP prote 84.2 0.9 3.1E-05 44.4 4.8 21 76-96 50-70 (363)
273 2chg_A Replication factor C sm 84.2 0.73 2.5E-05 40.8 3.9 18 78-95 39-56 (226)
274 1m7g_A Adenylylsulfate kinase; 84.1 0.52 1.8E-05 42.1 2.8 20 75-94 23-42 (211)
275 2bbw_A Adenylate kinase 4, AK4 84.1 0.53 1.8E-05 43.2 2.9 19 76-94 26-44 (246)
276 3hgt_A HDA1 complex subunit 3; 84.1 5.4 0.00018 38.1 9.9 103 241-359 127-237 (328)
277 2pt5_A Shikimate kinase, SK; a 84.0 0.51 1.7E-05 40.2 2.6 17 79-95 2-18 (168)
278 3nwj_A ATSK2; P loop, shikimat 83.9 0.47 1.6E-05 43.9 2.4 20 75-94 46-65 (250)
279 4edh_A DTMP kinase, thymidylat 83.9 1 3.5E-05 40.5 4.6 20 75-94 4-23 (213)
280 3kta_A Chromosome segregation 83.9 0.68 2.3E-05 40.1 3.4 23 77-99 26-50 (182)
281 3t15_A Ribulose bisphosphate c 83.8 0.74 2.5E-05 43.6 3.9 20 77-96 36-55 (293)
282 1e4v_A Adenylate kinase; trans 83.8 0.49 1.7E-05 42.3 2.5 18 79-96 2-19 (214)
283 4e22_A Cytidylate kinase; P-lo 83.8 0.54 1.9E-05 43.4 2.9 20 76-95 26-45 (252)
284 3tlx_A Adenylate kinase 2; str 83.7 0.8 2.7E-05 42.0 4.0 23 76-98 28-50 (243)
285 3tif_A Uncharacterized ABC tra 83.6 0.57 1.9E-05 42.8 2.8 64 248-315 150-218 (235)
286 4b4t_M 26S protease regulatory 83.5 0.79 2.7E-05 46.0 4.0 22 77-98 215-236 (434)
287 3d8b_A Fidgetin-like protein 1 83.5 0.92 3.1E-05 44.3 4.5 27 76-102 116-142 (357)
288 1gm5_A RECG; helicase, replica 83.4 2.7 9.3E-05 45.5 8.5 79 240-320 418-502 (780)
289 3io5_A Recombination and repai 83.4 0.48 1.6E-05 45.3 2.3 76 79-170 30-124 (333)
290 3uk6_A RUVB-like 2; hexameric 83.3 0.52 1.8E-05 46.0 2.7 19 77-95 70-88 (368)
291 1nlf_A Regulatory protein REPA 83.2 0.72 2.5E-05 43.2 3.5 24 75-98 28-51 (279)
292 2og2_A Putative signal recogni 83.1 1.2 3.9E-05 43.6 5.0 32 76-107 156-191 (359)
293 3a4m_A L-seryl-tRNA(SEC) kinas 82.9 0.62 2.1E-05 43.2 2.9 18 77-94 4-21 (260)
294 2pbr_A DTMP kinase, thymidylat 82.9 0.59 2E-05 40.8 2.6 16 79-94 2-17 (195)
295 2if2_A Dephospho-COA kinase; a 82.8 0.58 2E-05 41.4 2.5 16 79-94 3-18 (204)
296 1vht_A Dephospho-COA kinase; s 82.8 0.64 2.2E-05 41.6 2.9 18 77-94 4-21 (218)
297 4tmk_A Protein (thymidylate ki 82.7 1.1 3.9E-05 40.1 4.4 27 76-102 2-31 (213)
298 2r2a_A Uncharacterized protein 82.7 0.78 2.7E-05 40.7 3.3 20 79-98 7-26 (199)
299 1ye8_A Protein THEP1, hypothet 82.6 0.63 2.1E-05 40.5 2.6 16 79-94 2-17 (178)
300 4fcw_A Chaperone protein CLPB; 82.6 0.61 2.1E-05 44.3 2.8 18 77-94 47-64 (311)
301 1rz3_A Hypothetical protein rb 82.5 0.65 2.2E-05 41.2 2.7 19 76-94 21-39 (201)
302 1jjv_A Dephospho-COA kinase; P 82.5 0.61 2.1E-05 41.3 2.6 17 78-94 3-19 (206)
303 2p5t_B PEZT; postsegregational 82.4 0.48 1.7E-05 43.8 1.9 21 76-96 31-51 (253)
304 1um8_A ATP-dependent CLP prote 82.4 0.59 2E-05 46.0 2.6 21 76-96 71-91 (376)
305 1xp8_A RECA protein, recombina 82.4 1.2 4.1E-05 43.6 4.8 32 76-107 73-108 (366)
306 3vfd_A Spastin; ATPase, microt 82.3 1.1 3.9E-05 44.1 4.7 24 77-100 148-171 (389)
307 2z0h_A DTMP kinase, thymidylat 82.3 0.59 2E-05 40.9 2.4 16 79-94 2-17 (197)
308 2xb4_A Adenylate kinase; ATP-b 82.3 0.62 2.1E-05 42.1 2.6 17 79-95 2-18 (223)
309 3cmw_A Protein RECA, recombina 82.2 2 7E-05 50.3 7.3 32 76-107 731-766 (1706)
310 1ojl_A Transcriptional regulat 82.0 0.62 2.1E-05 44.4 2.6 20 76-95 24-43 (304)
311 1iy2_A ATP-dependent metallopr 82.0 1.5 5.2E-05 40.9 5.3 18 78-95 74-91 (278)
312 1nij_A Hypothetical protein YJ 82.0 0.88 3E-05 43.7 3.6 32 78-109 5-38 (318)
313 2cbz_A Multidrug resistance-as 82.0 0.71 2.4E-05 42.2 2.8 63 248-315 132-201 (237)
314 4b4t_K 26S protease regulatory 81.7 1 3.4E-05 45.1 4.0 22 77-98 206-227 (428)
315 3qks_A DNA double-strand break 81.7 0.99 3.4E-05 40.1 3.6 26 76-101 22-49 (203)
316 1htw_A HI0065; nucleotide-bind 81.7 0.79 2.7E-05 39.0 2.8 19 76-94 32-50 (158)
317 3gfo_A Cobalt import ATP-bindi 81.7 0.73 2.5E-05 43.2 2.8 63 248-314 148-216 (275)
318 3bh0_A DNAB-like replicative h 81.6 2.4 8.2E-05 40.5 6.6 32 76-107 67-102 (315)
319 1odf_A YGR205W, hypothetical 3 81.6 0.73 2.5E-05 43.6 2.8 19 76-94 30-48 (290)
320 4b4t_L 26S protease subunit RP 81.6 0.89 3E-05 45.6 3.5 23 77-99 215-237 (437)
321 4b4t_J 26S protease regulatory 81.4 0.97 3.3E-05 44.7 3.7 23 77-99 182-204 (405)
322 1zu4_A FTSY; GTPase, signal re 81.4 1.5 5.1E-05 42.1 5.0 32 76-107 104-139 (320)
323 3auy_A DNA double-strand break 81.4 0.97 3.3E-05 44.4 3.8 24 76-99 24-49 (371)
324 3aez_A Pantothenate kinase; tr 81.4 0.76 2.6E-05 44.0 2.9 20 75-94 88-107 (312)
325 3hjh_A Transcription-repair-co 81.3 2.4 8.1E-05 43.2 6.7 56 76-131 13-70 (483)
326 2jeo_A Uridine-cytidine kinase 81.3 0.77 2.6E-05 42.1 2.8 19 76-94 24-42 (245)
327 3tqc_A Pantothenate kinase; bi 81.3 1.4 4.9E-05 42.2 4.8 21 79-99 94-116 (321)
328 2vp4_A Deoxynucleoside kinase; 81.2 0.8 2.7E-05 41.6 2.9 19 76-94 19-37 (230)
329 1njg_A DNA polymerase III subu 81.1 0.96 3.3E-05 40.6 3.4 18 78-95 46-63 (250)
330 2pcj_A ABC transporter, lipopr 81.0 0.71 2.4E-05 41.8 2.4 19 76-94 29-47 (224)
331 1gtv_A TMK, thymidylate kinase 80.9 0.43 1.5E-05 42.5 0.9 16 79-94 2-17 (214)
332 1in4_A RUVB, holliday junction 80.9 0.67 2.3E-05 44.8 2.3 17 78-94 52-68 (334)
333 4eaq_A DTMP kinase, thymidylat 80.7 0.85 2.9E-05 41.5 2.9 19 76-94 25-43 (229)
334 3nh6_A ATP-binding cassette SU 80.7 0.65 2.2E-05 44.3 2.1 63 248-315 195-261 (306)
335 1cr0_A DNA primase/helicase; R 80.6 1 3.4E-05 42.6 3.5 32 76-107 34-70 (296)
336 1mv5_A LMRA, multidrug resista 80.6 0.85 2.9E-05 41.9 2.8 19 76-94 27-45 (243)
337 2grj_A Dephospho-COA kinase; T 80.5 0.76 2.6E-05 40.5 2.4 41 76-118 11-51 (192)
338 2ff7_A Alpha-hemolysin translo 80.5 0.86 2.9E-05 42.0 2.8 63 248-315 150-216 (247)
339 4a1f_A DNAB helicase, replicat 80.4 3 0.0001 40.3 6.7 42 76-117 45-93 (338)
340 2c9o_A RUVB-like 1; hexameric 80.3 0.78 2.7E-05 46.5 2.7 19 77-95 63-81 (456)
341 1sgw_A Putative ABC transporte 80.2 0.84 2.9E-05 41.1 2.6 19 76-94 34-52 (214)
342 2pze_A Cystic fibrosis transme 80.2 0.9 3.1E-05 41.3 2.8 63 248-315 135-202 (229)
343 4g1u_C Hemin import ATP-bindin 80.1 0.89 3E-05 42.4 2.8 65 248-313 146-219 (266)
344 2f1r_A Molybdopterin-guanine d 80.1 0.66 2.3E-05 40.1 1.8 17 78-94 3-19 (171)
345 2ghi_A Transport protein; mult 80.0 0.9 3.1E-05 42.2 2.8 63 248-315 160-226 (260)
346 2i3b_A HCR-ntpase, human cance 80.0 0.83 2.9E-05 40.2 2.5 18 77-94 1-18 (189)
347 3hu3_A Transitional endoplasmi 80.0 2 7E-05 43.8 5.7 33 76-108 237-269 (489)
348 1g6h_A High-affinity branched- 79.9 0.82 2.8E-05 42.4 2.5 63 248-314 158-225 (257)
349 2r62_A Cell division protease 79.9 0.39 1.3E-05 44.7 0.3 19 77-95 44-62 (268)
350 3oiy_A Reverse gyrase helicase 79.6 3.4 0.00011 40.9 7.2 77 239-317 64-148 (414)
351 1ji0_A ABC transporter; ATP bi 79.6 0.96 3.3E-05 41.4 2.8 19 76-94 31-49 (240)
352 1b0u_A Histidine permease; ABC 79.5 0.95 3.3E-05 42.1 2.8 51 248-301 158-213 (262)
353 2vhj_A Ntpase P4, P4; non- hyd 79.5 1.1 3.9E-05 42.8 3.4 24 76-99 122-145 (331)
354 3b85_A Phosphate starvation-in 79.3 0.83 2.8E-05 40.9 2.2 19 76-94 21-39 (208)
355 1xjc_A MOBB protein homolog; s 79.0 1.3 4.4E-05 38.2 3.3 17 78-94 5-21 (169)
356 2r44_A Uncharacterized protein 79.0 0.7 2.4E-05 44.4 1.8 20 76-95 45-64 (331)
357 3lv8_A DTMP kinase, thymidylat 78.9 1 3.6E-05 41.1 2.8 20 75-94 25-44 (236)
358 4b4t_I 26S protease regulatory 78.8 1.5 5E-05 43.8 4.0 22 77-98 216-237 (437)
359 3r20_A Cytidylate kinase; stru 78.8 1 3.5E-05 41.0 2.7 20 76-95 8-27 (233)
360 1ltq_A Polynucleotide kinase; 78.7 1.9 6.4E-05 40.7 4.7 21 78-98 3-23 (301)
361 2d2e_A SUFC protein; ABC-ATPas 78.7 1.1 3.6E-05 41.4 2.8 65 248-314 148-216 (250)
362 2jgn_A DBX, DDX3, ATP-dependen 78.6 12 0.00041 32.3 9.6 77 87-163 29-120 (185)
363 1vpl_A ABC transporter, ATP-bi 78.6 1.1 3.7E-05 41.6 2.8 51 248-301 151-206 (256)
364 2x8a_A Nuclear valosin-contain 78.6 2 6.8E-05 40.2 4.7 18 78-95 45-62 (274)
365 2yhs_A FTSY, cell division pro 78.5 2 6.9E-05 43.7 5.0 32 76-107 292-327 (503)
366 3qf7_A RAD50; ABC-ATPase, ATPa 78.5 1 3.5E-05 44.1 2.8 18 77-94 23-40 (365)
367 2olj_A Amino acid ABC transpor 78.5 1.1 3.7E-05 41.7 2.8 51 248-301 164-219 (263)
368 2zu0_C Probable ATP-dependent 78.4 1.1 3.7E-05 41.8 2.8 65 248-314 169-237 (267)
369 1ls1_A Signal recognition part 78.3 4.1 0.00014 38.4 6.9 87 76-169 97-192 (295)
370 2ixe_A Antigen peptide transpo 78.3 1.1 3.8E-05 41.9 2.8 64 248-315 161-229 (271)
371 1sq5_A Pantothenate kinase; P- 78.0 1.1 3.8E-05 42.7 2.8 19 76-94 79-97 (308)
372 3ake_A Cytidylate kinase; CMP 78.0 1.2 4E-05 39.3 2.9 17 79-95 4-20 (208)
373 3nbx_X ATPase RAVA; AAA+ ATPas 77.8 1 3.5E-05 46.1 2.7 20 76-95 40-59 (500)
374 2yz2_A Putative ABC transporte 77.8 1.2 4E-05 41.6 2.8 50 248-300 143-197 (266)
375 2nq2_C Hypothetical ABC transp 77.8 1.1 3.9E-05 41.3 2.8 19 76-94 30-48 (253)
376 2qi9_C Vitamin B12 import ATP- 77.7 1.2 4E-05 41.1 2.8 19 76-94 25-43 (249)
377 4b4t_H 26S protease regulatory 77.6 1.2 4.2E-05 44.8 3.1 23 76-98 242-264 (467)
378 2ihy_A ABC transporter, ATP-bi 77.5 1.2 4.1E-05 41.9 2.8 63 248-314 166-235 (279)
379 1j8m_F SRP54, signal recogniti 77.4 2.6 9E-05 39.9 5.3 86 77-169 98-192 (297)
380 1uj2_A Uridine-cytidine kinase 77.4 1.2 4.2E-05 40.9 2.9 18 77-94 22-39 (252)
381 2f6r_A COA synthase, bifunctio 77.1 1.2 4.1E-05 41.8 2.8 18 77-94 75-92 (281)
382 1w36_B RECB, exodeoxyribonucle 77.1 2.7 9.2E-05 48.0 6.1 47 76-123 16-78 (1180)
383 3pxg_A Negative regulator of g 77.1 1.2 4.1E-05 45.3 2.9 20 75-94 199-218 (468)
384 1g8p_A Magnesium-chelatase 38 77.0 0.65 2.2E-05 44.9 0.9 20 77-96 45-64 (350)
385 2rb4_A ATP-dependent RNA helic 76.9 7.4 0.00025 33.1 7.7 82 82-163 13-108 (175)
386 3lda_A DNA repair protein RAD5 76.7 2.3 7.9E-05 42.1 4.8 23 76-98 177-199 (400)
387 1fuk_A Eukaryotic initiation f 76.6 11 0.00039 31.5 8.8 75 89-163 16-104 (165)
388 4hlc_A DTMP kinase, thymidylat 76.6 3.4 0.00012 36.7 5.5 34 77-110 2-39 (205)
389 2q6t_A DNAB replication FORK h 76.6 4.4 0.00015 40.7 7.0 32 76-107 199-235 (444)
390 3bs4_A Uncharacterized protein 76.6 2.1 7.3E-05 39.6 4.2 52 76-128 20-75 (260)
391 2h92_A Cytidylate kinase; ross 76.3 2.2 7.6E-05 38.0 4.3 21 77-97 3-23 (219)
392 2hjv_A ATP-dependent RNA helic 76.0 9.8 0.00034 31.9 8.1 77 87-163 19-109 (163)
393 3m6a_A ATP-dependent protease 75.9 1.3 4.3E-05 46.0 2.8 19 76-94 107-125 (543)
394 1p5z_B DCK, deoxycytidine kina 75.9 1.4 4.8E-05 40.7 2.9 19 76-94 23-41 (263)
395 1g5t_A COB(I)alamin adenosyltr 75.9 2.9 0.0001 36.8 4.7 33 76-108 27-63 (196)
396 3v9p_A DTMP kinase, thymidylat 75.8 1.2 4.1E-05 40.4 2.3 20 75-94 23-42 (227)
397 1g41_A Heat shock protein HSLU 75.7 1.3 4.4E-05 44.6 2.6 19 77-95 50-68 (444)
398 3tmk_A Thymidylate kinase; pho 75.7 1.4 5E-05 39.5 2.8 19 76-94 4-22 (216)
399 1np6_A Molybdopterin-guanine d 75.6 1.8 6.1E-05 37.4 3.3 18 77-94 6-23 (174)
400 3bgw_A DNAB-like replicative h 75.3 3.9 0.00013 41.1 6.1 32 76-107 196-231 (444)
401 2bbs_A Cystic fibrosis transme 75.3 1.5 5E-05 41.5 2.8 62 248-314 164-230 (290)
402 1q3t_A Cytidylate kinase; nucl 74.9 1.6 5.5E-05 39.6 2.9 21 75-95 14-34 (236)
403 2ocp_A DGK, deoxyguanosine kin 74.8 1.6 5.3E-05 39.8 2.8 18 77-94 2-19 (241)
404 2ffh_A Protein (FFH); SRP54, s 74.7 4.4 0.00015 40.4 6.3 53 76-128 97-156 (425)
405 1tf7_A KAIC; homohexamer, hexa 74.1 2.8 9.6E-05 43.2 4.8 32 76-107 38-74 (525)
406 3qkt_A DNA double-strand break 74.0 1.6 5.5E-05 42.2 2.8 19 76-94 22-40 (339)
407 2onk_A Molybdate/tungstate ABC 74.0 1.4 4.9E-05 40.3 2.3 51 248-300 131-186 (240)
408 1svm_A Large T antigen; AAA+ f 73.9 1.6 5.6E-05 42.8 2.9 19 76-94 168-186 (377)
409 2r8r_A Sensor protein; KDPD, P 73.9 3.5 0.00012 37.2 4.8 19 77-95 6-24 (228)
410 3i4u_A ATP-dependent RNA helic 73.8 0.72 2.5E-05 43.1 0.3 71 405-479 8-79 (270)
411 1iqp_A RFCS; clamp loader, ext 73.7 2 6.8E-05 40.8 3.4 18 78-95 47-64 (327)
412 1a7j_A Phosphoribulokinase; tr 73.7 0.97 3.3E-05 42.7 1.1 18 77-94 5-22 (290)
413 3eaq_A Heat resistant RNA depe 73.7 8.6 0.00029 34.0 7.5 77 87-163 15-105 (212)
414 2ce7_A Cell division protein F 73.7 1.6 5.4E-05 44.4 2.7 19 77-95 49-67 (476)
415 2pjz_A Hypothetical protein ST 73.4 1.7 5.8E-05 40.4 2.7 51 248-302 133-186 (263)
416 1q57_A DNA primase/helicase; d 73.2 4.6 0.00016 41.3 6.2 32 76-107 241-277 (503)
417 3fvq_A Fe(3+) IONS import ATP- 73.2 1.7 5.9E-05 42.3 2.8 19 76-94 29-47 (359)
418 1sxj_C Activator 1 40 kDa subu 73.0 1.6 5.5E-05 42.1 2.5 16 80-95 49-64 (340)
419 3zvl_A Bifunctional polynucleo 72.9 2.2 7.4E-05 42.6 3.5 24 76-99 257-280 (416)
420 1sxj_D Activator 1 41 kDa subu 72.7 1.7 5.7E-05 41.9 2.6 17 78-94 59-75 (353)
421 1knx_A Probable HPR(Ser) kinas 72.5 2.7 9.1E-05 40.0 3.8 25 76-100 146-170 (312)
422 1z47_A CYSA, putative ABC-tran 72.3 1.7 5.8E-05 42.3 2.5 19 76-94 40-58 (355)
423 1pui_A ENGB, probable GTP-bind 72.2 2 6.7E-05 37.8 2.8 19 76-94 25-43 (210)
424 3hjn_A DTMP kinase, thymidylat 71.7 3.9 0.00013 36.0 4.6 32 80-111 3-39 (197)
425 3rlf_A Maltose/maltodextrin im 71.6 2 6.8E-05 42.2 2.8 19 76-94 28-46 (381)
426 3pxi_A Negative regulator of g 71.4 1.9 6.6E-05 46.7 2.9 20 75-94 199-218 (758)
427 3sop_A Neuronal-specific septi 71.4 1.9 6.3E-05 40.3 2.5 16 79-94 4-19 (270)
428 2yyz_A Sugar ABC transporter, 71.4 1.8 6.3E-05 42.2 2.5 19 76-94 28-46 (359)
429 2it1_A 362AA long hypothetical 71.2 1.9 6.3E-05 42.2 2.5 19 76-94 28-46 (362)
430 2l82_A Designed protein OR32; 71.1 20 0.00069 27.5 7.7 45 242-287 4-50 (162)
431 3nwn_A Kinesin-like protein KI 70.8 2.3 8E-05 41.3 3.1 19 76-94 104-122 (359)
432 3ld9_A DTMP kinase, thymidylat 70.8 2.4 8E-05 38.3 2.9 20 75-94 19-38 (223)
433 2p6n_A ATP-dependent RNA helic 70.8 9.6 0.00033 33.2 6.9 77 87-163 39-128 (191)
434 1t5i_A C_terminal domain of A 70.7 12 0.00042 31.7 7.5 77 87-163 15-105 (172)
435 2r6a_A DNAB helicase, replicat 70.7 2.6 8.8E-05 42.6 3.5 32 76-107 202-238 (454)
436 3gd7_A Fusion complex of cysti 70.6 2.1 7.3E-05 42.2 2.8 19 76-94 46-64 (390)
437 2chq_A Replication factor C sm 70.5 2 6.9E-05 40.6 2.6 17 79-95 40-56 (319)
438 3fdi_A Uncharacterized protein 70.5 2.2 7.6E-05 37.7 2.7 24 75-98 4-27 (201)
439 1bg2_A Kinesin; motor protein, 70.4 2.5 8.5E-05 40.6 3.2 20 76-95 77-96 (325)
440 2xxa_A Signal recognition part 70.4 5 0.00017 40.2 5.5 43 77-119 100-149 (433)
441 2qen_A Walker-type ATPase; unk 70.3 3.8 0.00013 39.1 4.6 30 77-107 31-60 (350)
442 1u0j_A DNA replication protein 70.2 3 0.0001 38.7 3.5 20 77-96 104-123 (267)
443 1g29_1 MALK, maltose transport 70.0 2 7E-05 42.1 2.5 19 76-94 28-46 (372)
444 4a82_A Cystic fibrosis transme 70.0 2.2 7.4E-05 44.7 2.8 63 248-315 482-548 (578)
445 2j37_W Signal recognition part 70.0 6 0.00021 40.4 6.1 86 77-169 101-195 (504)
446 1v43_A Sugar-binding transport 69.7 2.1 7.2E-05 42.0 2.5 19 76-94 36-54 (372)
447 3dc4_A Kinesin-like protein NO 69.6 2.6 8.9E-05 40.8 3.1 19 76-94 94-112 (344)
448 3d31_A Sulfate/molybdate ABC t 69.5 1.7 5.8E-05 42.2 1.8 19 76-94 25-43 (348)
449 1ypw_A Transitional endoplasmi 69.5 4.2 0.00014 44.4 5.1 23 76-98 237-259 (806)
450 1e69_A Chromosome segregation 69.5 2.1 7.3E-05 40.9 2.5 52 248-300 224-281 (322)
451 1tf7_A KAIC; homohexamer, hexa 69.1 4.1 0.00014 41.9 4.8 49 76-125 280-332 (525)
452 3tui_C Methionine import ATP-b 69.0 2.5 8.5E-05 41.3 2.8 19 76-94 53-71 (366)
453 2ius_A DNA translocase FTSK; n 69.0 2.5 8.6E-05 43.3 3.0 18 77-94 167-184 (512)
454 2dhr_A FTSH; AAA+ protein, hex 68.9 2.3 7.9E-05 43.5 2.7 18 78-95 65-82 (499)
455 2y65_A Kinesin, kinesin heavy 68.6 2.8 9.7E-05 40.8 3.2 19 76-94 84-102 (365)
456 3k1j_A LON protease, ATP-depen 68.4 2.2 7.7E-05 44.8 2.6 19 76-94 59-77 (604)
457 3cf2_A TER ATPase, transitiona 68.1 5.1 0.00017 43.4 5.3 37 77-113 238-274 (806)
458 1yks_A Genome polyprotein [con 68.1 10 0.00036 37.8 7.4 62 100-162 176-245 (440)
459 2vvg_A Kinesin-2; motor protei 68.1 3 0.0001 40.5 3.2 19 76-94 89-107 (350)
460 1t5c_A CENP-E protein, centrom 67.9 2.9 0.0001 40.5 3.1 19 76-94 77-95 (349)
461 1ko7_A HPR kinase/phosphatase; 67.8 4.2 0.00014 38.7 4.1 26 76-101 143-168 (314)
462 2h58_A Kinesin-like protein KI 67.8 3 0.0001 40.1 3.1 20 75-94 79-98 (330)
463 2npi_A Protein CLP1; CLP1-PCF1 67.8 2.4 8.2E-05 42.9 2.5 19 76-94 137-155 (460)
464 1f9v_A Kinesin-like protein KA 67.7 3.1 0.00011 40.3 3.3 20 76-95 84-103 (347)
465 3b60_A Lipid A export ATP-bind 67.7 2.5 8.6E-05 44.2 2.8 63 248-315 485-551 (582)
466 2dyk_A GTP-binding protein; GT 67.6 3.5 0.00012 34.1 3.2 21 78-98 2-22 (161)
467 4a14_A Kinesin, kinesin-like p 67.6 3.1 0.0001 40.3 3.1 19 76-94 83-101 (344)
468 3qf4_A ABC transporter, ATP-bi 67.6 2.6 8.7E-05 44.2 2.8 63 248-315 484-550 (587)
469 4etp_A Kinesin-like protein KA 67.5 3.4 0.00012 40.9 3.6 20 76-95 140-159 (403)
470 3b5x_A Lipid A export ATP-bind 67.4 2.5 8.7E-05 44.2 2.7 63 248-315 485-551 (582)
471 3b6u_A Kinesin-like protein KI 67.3 3.1 0.0001 40.7 3.1 19 76-94 101-119 (372)
472 1lw7_A Transcriptional regulat 67.1 2.5 8.6E-05 41.2 2.5 18 77-94 170-187 (365)
473 1sxj_B Activator 1 37 kDa subu 67.0 3.9 0.00013 38.6 3.8 17 79-95 44-60 (323)
474 3qf4_B Uncharacterized ABC tra 66.8 2.4 8.1E-05 44.6 2.4 64 248-316 496-563 (598)
475 4ddu_A Reverse gyrase; topoiso 66.8 9.3 0.00032 43.2 7.3 75 240-317 122-205 (1104)
476 1goj_A Kinesin, kinesin heavy 66.7 2.9 0.0001 40.6 2.8 20 76-95 80-99 (355)
477 3gbj_A KIF13B protein; kinesin 66.6 3.2 0.00011 40.3 3.1 19 76-94 92-110 (354)
478 2zfi_A Kinesin-like protein KI 66.6 3.3 0.00011 40.4 3.2 45 75-123 88-132 (366)
479 2ce2_X GTPase HRAS; signaling 66.5 3.5 0.00012 34.1 3.0 21 78-98 4-24 (166)
480 3cf2_A TER ATPase, transitiona 66.4 7.7 0.00026 42.0 6.2 33 77-109 511-543 (806)
481 3lre_A Kinesin-like protein KI 66.2 3 0.0001 40.5 2.8 19 76-94 105-123 (355)
482 2nr8_A Kinesin-like protein KI 66.2 3.3 0.00011 40.2 3.1 19 76-94 103-121 (358)
483 1oxx_K GLCV, glucose, ABC tran 66.1 1.8 6E-05 42.2 1.1 19 76-94 30-48 (353)
484 3bfn_A Kinesin-like protein KI 66.0 3.3 0.00011 40.7 3.0 19 76-94 98-116 (388)
485 1v8k_A Kinesin-like protein KI 65.9 2.9 9.8E-05 41.4 2.6 20 76-95 154-173 (410)
486 1r6b_X CLPA protein; AAA+, N-t 65.9 2.8 9.6E-05 45.4 2.8 19 76-94 206-224 (758)
487 2wji_A Ferrous iron transport 65.8 3.8 0.00013 34.5 3.1 22 77-98 3-24 (165)
488 2wbe_C Bipolar kinesin KRP-130 65.8 3.4 0.00012 40.4 3.1 21 75-95 99-119 (373)
489 3i32_A Heat resistant RNA depe 65.7 27 0.00094 32.8 9.4 78 86-163 11-102 (300)
490 3u06_A Protein claret segregat 65.6 3.5 0.00012 40.9 3.1 19 76-94 138-156 (412)
491 3cob_A Kinesin heavy chain-lik 65.6 2.9 0.0001 40.8 2.6 19 76-94 79-97 (369)
492 3cr8_A Sulfate adenylyltranfer 65.6 2.4 8.2E-05 43.9 2.0 19 76-94 368-386 (552)
493 4akg_A Glutathione S-transfera 65.2 4.4 0.00015 49.9 4.5 26 76-101 1266-1291(2695)
494 1w1w_A Structural maintenance 65.1 3.8 0.00013 40.9 3.5 23 77-99 26-50 (430)
495 1x88_A Kinesin-like protein KI 65.1 3 0.0001 40.6 2.6 20 76-95 88-107 (359)
496 1ry6_A Internal kinesin; kines 64.9 3.1 0.0001 40.5 2.5 17 79-95 87-103 (360)
497 2heh_A KIF2C protein; kinesin, 64.4 3.2 0.00011 40.7 2.6 20 76-95 134-153 (387)
498 2yl4_A ATP-binding cassette SU 63.9 2.8 9.5E-05 44.0 2.2 63 248-315 488-554 (595)
499 1kao_A RAP2A; GTP-binding prot 63.6 4.4 0.00015 33.6 3.1 22 77-98 3-24 (167)
500 2ged_A SR-beta, signal recogni 63.6 4.5 0.00015 34.8 3.2 23 77-99 48-70 (193)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.1e-62 Score=523.17 Aligned_cols=446 Identities=43% Similarity=0.764 Sum_probs=403.3
Q ss_pred cCCCCCCccccchHHHhcCCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc
Q 010534 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137 (508)
Q Consensus 58 ~~~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~ 137 (508)
.+.+++.+++|+|.++.+++++++++||||||||+.+++.+...++++|++|||+||.|+++++++.|++|+.++|+...
T Consensus 136 ~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~ 215 (677)
T 3rc3_A 136 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV 215 (677)
T ss_dssp HHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE
T ss_pred HHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE
Confidence 45778888899999999999999999999999999999999998999999999999999999999999999999999876
Q ss_pred ccC----CCcEEEEcceeccccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCCcE
Q 010534 138 EVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213 (508)
Q Consensus 138 ~~~----~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (508)
... ...++++|+++++....++++||||||++.+.++|+.|...+.++.+..+++++.+++.+.+..+....+..+
T Consensus 216 iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~ 295 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV 295 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE
T ss_pred EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce
Confidence 543 3679999999999999999999999999999889999999999999888999999999999999998889999
Q ss_pred EEEeeeecCCCCCCCCccccccccCCCCEEEEeeHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCee
Q 010534 214 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (508)
Q Consensus 214 ~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ 293 (508)
.+..+.+..++......+..+.+..+|++|||+|+++++.+++.|++.+. .+.++||+|++++|.++++.|++++|+.+
T Consensus 296 ~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~-~v~~lHG~L~~~~R~~~~~~F~~~~g~~~ 374 (677)
T 3rc3_A 296 EVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL-ESAVIYGSLPPGTKLAQAKKFNDPNDPCK 374 (677)
T ss_dssp EEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHCTTSSCC
T ss_pred EEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC-CeeeeeccCCHHHHHHHHHHHHccCCCeE
Confidence 99888888877766666666777788888888899999999999998766 89999999999999999999998668899
Q ss_pred EEEecccccccccccccEEEEccccccc--Cc---ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHhhhc
Q 010534 294 VLVASDAIGMGLNLNISRIIFSTMKKFD--GV---ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368 (508)
Q Consensus 294 ilVaT~~~~~Gidipv~~VI~~~~~~~d--~~---~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~~~~ 368 (508)
|||||+++++|||+++++||+++..+|+ +. +.+|.+.++|+||+|||||.|..+..|.|+.+++++...+++++.
T Consensus 375 VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~ 454 (677)
T 3rc3_A 375 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILK 454 (677)
T ss_dssp EEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHH
T ss_pred EEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHh
Confidence 9999999999999999999999998863 22 456999999999999999999754459999999998889999999
Q ss_pred CCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCC
Q 010534 369 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448 (508)
Q Consensus 369 ~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~ 448 (508)
...+++.+.++.+..++++.+...++...+.+++..+......+..|++++++++..+++++++.++++.+++.||++|+
T Consensus 455 ~~~~~i~~~~l~p~~~~l~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~aP~ 534 (677)
T 3rc3_A 455 RPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPI 534 (677)
T ss_dssp SCCCCCCCEEECCCHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHSCC
T ss_pred cCcchhhhccCCChHHHHHHHhccCCcchHHHHHHHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHhcCcccchhhc--cCCCCCCCCcHHHHHHHHHHhhHhhh
Q 010534 449 DMNDDISSQGLTQFATNYSKKGIVQLREIF--TPGTLQVPKTQAALRELESIHKVGLF 504 (508)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~le~~~~~~~~ 504 (508)
+.+++..+++|.+|++.|+.++++++..+. .+++...+++..+|..||.+|++++.
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~ 592 (677)
T 3rc3_A 535 NKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDL 592 (677)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999985443 24566778899999999999998753
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-40 Score=362.38 Aligned_cols=407 Identities=19% Similarity=0.184 Sum_probs=270.2
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLA 114 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La 114 (508)
+++.+.+.++.. |+..++++|. +++.+. .++++++++||||||||++++.++. .+++++|++|+|+|+
T Consensus 15 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~~~-~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La 88 (715)
T 2va8_A 15 LPSNVIEIIKKR-----GIKKLNPPQTEAVKKGL-LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALT 88 (715)
T ss_dssp SCHHHHHHHHTT-----SCCBCCHHHHHHHHTTT-TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHH
T ss_pred CCHHHHHHHHhC-----CCCCCCHHHHHHHHHHh-cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHH
Confidence 789999999988 9999999999 888722 4589999999999999999866553 467899999999999
Q ss_pred HHHHHHHHh---CCCceeeecccccccc---CCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHH
Q 010534 115 WEVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTR 180 (508)
Q Consensus 115 ~q~~~~l~~---~g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~ 180 (508)
.|++++++. +|++++..+|+..... .+..++++|++++. ++.++++|||||||++.+..+|..+..
T Consensus 89 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~ 168 (715)
T 2va8_A 89 NEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVES 168 (715)
T ss_dssp HHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHH
Confidence 999999853 4899999999765443 26789999997764 268899999999999987777877766
Q ss_pred HHhcccCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCC----------------CC----------CCccccc
Q 010534 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV----------------PL----------NVPLGSF 234 (508)
Q Consensus 181 ~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~----------------~~----------~~~l~~l 234 (508)
++..+. ..++++.+++.+....+..+.+.... ....+..++. .. ...+..+
T Consensus 169 i~~~~~--~~~ii~lSATl~n~~~~~~~l~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 169 VTIRAK--RRNLLALSATISNYKQIAKWLGAEPV-ATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp HHHHHH--TSEEEEEESCCTTHHHHHHHHTCEEE-ECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred HHHhcc--cCcEEEEcCCCCCHHHHHHHhCCCcc-CCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 654444 56777777777666777777765321 1111111110 00 0001111
Q ss_pred cc--cCCCCEEEEe-eHHHHHHHHHHHHhcCC-----------------------------------CeEEEEcCCCCHH
Q 010534 235 SN--IQTGDCIVTF-SRHAIYRLKKAIESRGK-----------------------------------HLCSIVYGSLPPE 276 (508)
Q Consensus 235 ~~--~~~~~~iv~~-s~~~~~~l~~~L~~~~~-----------------------------------~~v~~lhg~l~~~ 276 (508)
.+ ...++++||+ ++++++.+++.|.+... ..+.++||+|+++
T Consensus 246 ~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 325 (715)
T 2va8_A 246 LDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKA 325 (715)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHH
Confidence 11 1456777777 89999999999986432 2499999999999
Q ss_pred HHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccccc---CcccccCChhhHHhhhccCCCCCCCCCcEEE
Q 010534 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD---GVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (508)
Q Consensus 277 ~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d---~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~ 352 (508)
+|..+++.|++ |.++|||||+++++|||+| +++||+ +...|| +....|.|.++|.||+|||||.|.+ ..|.|
T Consensus 326 ~r~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~-~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~-~~G~~ 401 (715)
T 2va8_A 326 LRDLIEEGFRQ--RKIKVIVATPTLAAGVNLPARTVIIG-DIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD-QIGES 401 (715)
T ss_dssp HHHHHHHHHHT--TCSCEEEECGGGGGSSCCCBSEEEEC-CC--------------CHHHHHHHHTTBCCTTTC-SCEEE
T ss_pred HHHHHHHHHHc--CCCeEEEEChHHhcccCCCceEEEEe-CCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC-CCceE
Confidence 99999999999 9999999999999999998 666555 455666 3345689999999999999999953 44999
Q ss_pred EEecCCCH---HHHHhhhcCCCchhhhcCCCCc---HHHHHHHHhhCCCCCHHHHHHHHHH--hc-ccCCCccccChHHH
Q 010534 353 TCLDSEDL---PLLHKSLLEPSPMLESAGLFPN---FDLIYMYSRLHPDSSLYGILEHFLE--NA-KLSENYFFANCEEV 423 (508)
Q Consensus 353 ~~~~~~~~---~~~~~~~~~~~~~i~~~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l 423 (508)
+.++.++. ..+++++...+ +..+..+... ..++..........+..++...+.. .. +++......+++.|
T Consensus 402 ~~l~~~~~~~~~~~~~~l~~~~-e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L 480 (715)
T 2va8_A 402 IVVVRDKEDVDRVFKKYVLSDV-EPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWL 480 (715)
T ss_dssp EEECSCGGGHHHHHHHTTSSCC-CCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHcCCC-CCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHH
Confidence 99987653 24555665444 3444555542 1122221111112234444442110 00 11111223333444
Q ss_pred HHHHHhhhc---CCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHH
Q 010534 424 LKVATVIDQ---LPLRLHEKYLFCISPVDMNDDISSQGLTQFATN 465 (508)
Q Consensus 424 ~~l~~~~~~---~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 465 (508)
..++.+..+ ..++..++. ++..|+ +|.....|....+.
T Consensus 481 ~~~g~i~~~~~~~~~t~lG~~-~~~~~~---~~~~~~~~~~~~~~ 521 (715)
T 2va8_A 481 LEHSFIKEEGNTFALTNFGKR-VADLYI---NPFTADIIRKGLEG 521 (715)
T ss_dssp HHTTSEEECSSEEEECHHHHH-HHHHTC---CHHHHHHHHHHHHH
T ss_pred HHCcCEeecCCeEeeChHHHH-HHHHcC---CHhHHHHHHHHhhh
Confidence 444443322 235666666 778888 46666666655544
No 3
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.2e-40 Score=360.85 Aligned_cols=408 Identities=18% Similarity=0.145 Sum_probs=280.2
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchH-HHhcCCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPL-ARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLL 113 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~-~~~~~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~L 113 (508)
+++.+.+.++.. |+..|+++|. +++. + .++++++++||||||||+++..++. ++++++|++|+++|
T Consensus 8 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~~~--~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raL 80 (720)
T 2zj8_A 8 VDERIKSTLKER-----GIESFYPPQAEALKSGI--LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKAL 80 (720)
T ss_dssp SCHHHHHHHHHT-----TCCBCCHHHHHHHTTTG--GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGG
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 788999999988 9999999999 8887 5 4589999999999999999855543 46789999999999
Q ss_pred HHHHHHHHHh---CCCceeeecccccccc---CCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHH
Q 010534 114 AWEVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFT 179 (508)
Q Consensus 114 a~q~~~~l~~---~g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~ 179 (508)
+.|+++++++ +|++++.++|+..... .+..++++|++++. ++.++++|||||||++.+..||..+.
T Consensus 81 a~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~ 160 (720)
T 2zj8_A 81 AEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLE 160 (720)
T ss_dssp HHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHH
Confidence 9999999974 4899999999754332 36789999998773 35789999999999999877887766
Q ss_pred HHHhcccCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCC----------C-------CCCccccccc--cCCC
Q 010534 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV----------P-------LNVPLGSFSN--IQTG 240 (508)
Q Consensus 180 ~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~----------~-------~~~~l~~l~~--~~~~ 240 (508)
.++-.+.. ..++++.+++.+....+..+.+.... ....++.++. . .......+.+ ...+
T Consensus 161 ~ll~~l~~-~~~ii~lSATl~n~~~~~~~l~~~~~-~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (720)
T 2zj8_A 161 VILAHMLG-KAQIIGLSATIGNPEELAEWLNAELI-VSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKK 238 (720)
T ss_dssp HHHHHHBT-TBEEEEEECCCSCHHHHHHHTTEEEE-ECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTC
T ss_pred HHHHHhhc-CCeEEEEcCCcCCHHHHHHHhCCccc-CCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCC
Confidence 65544443 67778877787667777777664221 1111111110 0 0111111111 1356
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCC--------------------------------CeEEEEcCCCCHHHHHHHHHHhcC
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGK--------------------------------HLCSIVYGSLPPETRTRQATRFND 287 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~--------------------------------~~v~~lhg~l~~~~R~~~~~~f~~ 287 (508)
+++||+ ++++++.+++.|.+... .++.++||+|++++|..+++.|++
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 777777 89999999999875311 149999999999999999999999
Q ss_pred CCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH--HHHHh
Q 010534 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLHK 365 (508)
Q Consensus 288 ~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~--~~~~~ 365 (508)
|.++|||||+++++|||+|...||..+..+||+.+..|.|..+|.||+|||||.|.+ ..|.|+.++.++. ..+++
T Consensus 319 --g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~ 395 (720)
T 2zj8_A 319 --GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD-EVGEGIIVSTSDDPREVMNH 395 (720)
T ss_dssp --TSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC-SEEEEEEECSSSCHHHHHHH
T ss_pred --CCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC-CCceEEEEecCccHHHHHHH
Confidence 999999999999999999844444445667775556799999999999999999853 4599998876553 33556
Q ss_pred hhcCCCchhhhcCCCC---cHHHHHHHHhhCCCCCHHHHHHHHH--Hhc-ccCC-----CccccChHHHHHHHHhh-hcC
Q 010534 366 SLLEPSPMLESAGLFP---NFDLIYMYSRLHPDSSLYGILEHFL--ENA-KLSE-----NYFFANCEEVLKVATVI-DQL 433 (508)
Q Consensus 366 ~~~~~~~~i~~~~l~~---~~~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~-----~~~~~~~~~l~~l~~~~-~~~ 433 (508)
++....+++... +.+ ...++..........+..++.+.+. +.. +... ......++.|...+.+. +..
T Consensus 396 ~~~~~~~~i~s~-l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~ 474 (720)
T 2zj8_A 396 YIFGKPEKLFSQ-LSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLE 474 (720)
T ss_dssp HTTSCCCCCCCC-TTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTT
T ss_pred HhcCCCCCcEee-cCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCC
Confidence 776666665533 222 2233333333333445556655321 111 1111 11222233333333322 211
Q ss_pred ---CCCHHHHHHhhcCCCCCCChhhHHHHHHHHHH
Q 010534 434 ---PLRLHEKYLFCISPVDMNDDISSQGLTQFATN 465 (508)
Q Consensus 434 ---~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 465 (508)
..+..++. .+..|+ +|.....|....+.
T Consensus 475 ~~~~~t~lG~~-~~~~~~---~~~~~~~~~~~~~~ 505 (720)
T 2zj8_A 475 DKIRPLSLGIR-TAKLYI---DPYTAKMFKDKMEE 505 (720)
T ss_dssp SCEEECHHHHH-HHHHTC---CHHHHHHHHHHHHH
T ss_pred CcEeeChHHHH-HHHHcC---CHHHHHHHHHHHHh
Confidence 24555655 788888 56777777666555
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-39 Score=356.84 Aligned_cols=327 Identities=22% Similarity=0.259 Sum_probs=240.6
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~ 115 (508)
+++.+.+.++.. |+..|+++|. +++.+ .++++++++||||||||++++.++ .++++++|++|+|+|+.
T Consensus 10 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~i--~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~ 82 (702)
T 2p6r_A 10 ISSYAVGILKEE-----GIEELFPPQAEAVEKV--FSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAG 82 (702)
T ss_dssp HHHHHHHHHHCC--------CCCCCCHHHHHHH--TTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHH
T ss_pred cCHHHHHHHHhC-----CCCCCCHHHHHHHHHH--hCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHH
Confidence 677888888888 9999999999 99987 569999999999999999986555 35789999999999999
Q ss_pred HHHHHHHh---CCCceeeecccccccc---CCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHH
Q 010534 116 EVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (508)
Q Consensus 116 q~~~~l~~---~g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ 181 (508)
|++++++. +|++++..+|+..... .+..++++|++++. .++++++||+||||++.+..||..+...
T Consensus 83 q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (702)
T 2p6r_A 83 EKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (702)
T ss_dssp HHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHH
Confidence 99999963 4889999999865543 37889999997763 2578999999999999987788776555
Q ss_pred Hhccc--CCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCCC----------C------C---ccccccc--cC
Q 010534 182 LLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL----------N------V---PLGSFSN--IQ 238 (508)
Q Consensus 182 ll~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~----------~------~---~l~~l~~--~~ 238 (508)
+-.+. ....++++.+++.+....+..+.+.... ....+..++... . . ....+.+ ..
T Consensus 163 l~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~-~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (702)
T 2p6r_A 163 VTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYY-VSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAE 241 (702)
T ss_dssp HHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEE-ECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCcc-cCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhc
Confidence 43332 3457778887887777888888775332 111122221100 0 0 0011111 14
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcC-----------------------------CCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRG-----------------------------KHLCSIVYGSLPPETRTRQATRFNDA 288 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~-----------------------------~~~v~~lhg~l~~~~R~~~~~~f~~~ 288 (508)
.++++||+ ++++++.+++.|.+.. ..++.++||+|++++|..+++.|++
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~- 320 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR- 320 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC-
Confidence 56777777 8999999999887531 1258899999999999999999999
Q ss_pred CCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-H-HHHh
Q 010534 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-P-LLHK 365 (508)
Q Consensus 289 ~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-~-~~~~ 365 (508)
|+++|||||+++++|||+| +++||+ +..+||+. ..|.|.++|.||+|||||.|.+ ..|.|+.++.++. . .+++
T Consensus 321 -g~~~vlvaT~~l~~Gidip~~~~VI~-~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~ 396 (702)
T 2p6r_A 321 -GNIKVVVATPTLAAGVNLPARRVIVR-SLYRFDGY-SKRIKVSEYKQMAGRAGRPGMD-ERGEAIIIVGKRDREIAVKR 396 (702)
T ss_dssp -TSCCEEEECSTTTSSSCCCBSEEEEC-CSEEESSS-EEECCHHHHHHHHTTBSCTTTC-SCEEEEEECCGGGHHHHHHT
T ss_pred -CCCeEEEECcHHhccCCCCceEEEEc-CceeeCCC-CCcCCHHHHHHHhhhcCCCCCC-CCceEEEEecCccHHHHHHH
Confidence 9999999999999999998 555554 46667743 5689999999999999999953 4599999987653 2 2334
Q ss_pred hhcCCCchhhhcCCCC
Q 010534 366 SLLEPSPMLESAGLFP 381 (508)
Q Consensus 366 ~~~~~~~~i~~~~l~~ 381 (508)
++...+ +..+..+..
T Consensus 397 ~l~~~~-e~~~s~l~~ 411 (702)
T 2p6r_A 397 YIFGEP-ERITSKLGV 411 (702)
T ss_dssp TTSSCC-CCCCCCCCS
T ss_pred HhcCCC-CCceeecCc
Confidence 554443 334455554
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-39 Score=334.61 Aligned_cols=295 Identities=17% Similarity=0.160 Sum_probs=220.1
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c--------CCCEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------SSSGIY 106 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~--------~~~~i~ 106 (508)
.+++.+.+.+... ||..|+++|. ++|.+ ++++++++++|||||||++++.++. . +.+++|
T Consensus 62 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~i--~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 62 DLRDIIIDNVNKS-----GYKIPTPIQKCSIPVI--SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 4889999999988 9999999999 99998 5699999999999999999754442 2 347899
Q ss_pred EcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccc
Q 010534 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~ 168 (508)
++|||+|+.|+++.++++ ++.+..++|+.... ..+..++++||+.+. .+.+++++|+||||+
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 214 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh
Confidence 999999999999999864 56777888865422 246789999996652 257899999999999
Q ss_pred cCCCCcChHHHHHHhcc--cCCceEEEccCCcchHHHHHHhHcCCcEEEEeeeecC-------------CCCCCCCcc-c
Q 010534 169 LGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS-------------PLVPLNVPL-G 232 (508)
Q Consensus 169 ~~~~~rg~~~~~~ll~l--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-------------~~~~~~~~l-~ 232 (508)
+.+..++..+..++..+ ......++.+++..+.+..+....-............ ....+...+ .
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 294 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHH
Confidence 99764444445555443 2333344444444445555554332222111111000 000000111 1
Q ss_pred cccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-cc
Q 010534 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (508)
Q Consensus 233 ~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~ 310 (508)
.+.+.. +.++||+ +++.++.+++.|.+.+. .+..+||++++++|.++++.|++ |+.+|||||+++++|+|+| ++
T Consensus 295 ~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 295 ILSEQA-DGTIVFVETKRGADFLASFLSEKEF-PTTSIHGDRLQSQREQALRDFKN--GSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHCC-TTEEEECSSHHHHHHHHHHHHHTTC-CEEEESTTSCHHHHHHHHHHHHT--SSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEchhhhCCCCcccCC
Confidence 122223 3466666 89999999999998876 89999999999999999999999 9999999999999999997 99
Q ss_pred EEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 311 ~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
+||+++. |.+..+|+||+|||||.|.. |.++.++.
T Consensus 371 ~VI~~d~---------p~~~~~y~qriGR~gR~g~~---G~a~~~~~ 405 (434)
T 2db3_A 371 HVINYDM---------PSKIDDYVHRIGRTGRVGNN---GRATSFFD 405 (434)
T ss_dssp EEEESSC---------CSSHHHHHHHHTTSSCTTCC---EEEEEEEC
T ss_pred EEEEECC---------CCCHHHHHHHhcccccCCCC---CEEEEEEe
Confidence 9999999 66999999999999999987 99888876
No 6
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8.6e-40 Score=357.18 Aligned_cols=411 Identities=16% Similarity=0.164 Sum_probs=283.9
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+... + ..|+.+|+ +++.+. .++++++++||||||||++.+..+.. ++.+++++|+|
T Consensus 78 ~l~~~~~~~l~~r-----~-~lP~~~q~~~i~~~l-~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r 150 (773)
T 2xau_A 78 EFTPKYVDILKIR-----R-ELPVHAQRDEFLKLY-QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRR 150 (773)
T ss_dssp BCCHHHHHHHHHH-----T-TSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCH
T ss_pred CCCHHHHHHHHHh-----h-cCChHHHHHHHHHHH-hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchH
Confidence 3677888888877 5 67888888 777764 35789999999999999976555432 33578889999
Q ss_pred HHHHHHHHHHH-hCCCceeeecccc----ccccCCCcEEEEcceecc-------ccCCccEEEEcccccc-CCCCcChHH
Q 010534 112 LLAWEVAKRLN-KANVSCDLITGQE----REEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQML-GCKTRGFSF 178 (508)
Q Consensus 112 ~La~q~~~~l~-~~g~~~~~~~g~~----~~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~-~~~~rg~~~ 178 (508)
+|+.|+++++. .+|..++..+|+. .....+..++++|++++. .+.++++|||||+|++ .+.+....+
T Consensus 151 ~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 151 VAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHH
Confidence 99999999886 4566666555532 223346789999996653 4689999999999973 221111112
Q ss_pred HHHHhcccCCceEEEccCCcchHHHHHHhHcCCcE---------EEEeeeecCCCCCC-CCccccc----cccCCCCEEE
Q 010534 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDV---------KVQSYERLSPLVPL-NVPLGSF----SNIQTGDCIV 244 (508)
Q Consensus 179 ~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~v~~~~~~~~~~~~-~~~l~~l----~~~~~~~~iv 244 (508)
...+..... ..+++..+++.+ ...+..+.+... ++..++...+.... ...+..+ .....++++|
T Consensus 231 l~~l~~~~~-~~~iIl~SAT~~-~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLV 308 (773)
T 2xau_A 231 LKQVVKRRP-DLKIIIMSATLD-AEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILL 308 (773)
T ss_dssp HHHHHHHCT-TCEEEEEESCSC-CHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHhCC-CceEEEEecccc-HHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEE
Confidence 222332222 233333333332 233444444322 22222211111100 0111111 1224677787
Q ss_pred Ee-eHHHHHHHHHHHHh----------cCCCeEEEEcCCCCHHHHHHHHHHhc-----CCCCCeeEEEeccccccccccc
Q 010534 245 TF-SRHAIYRLKKAIES----------RGKHLCSIVYGSLPPETRTRQATRFN-----DASSEFDVLVASDAIGMGLNLN 308 (508)
Q Consensus 245 ~~-s~~~~~~l~~~L~~----------~~~~~v~~lhg~l~~~~R~~~~~~f~-----~~~g~~~ilVaT~~~~~Gidip 308 (508)
|+ ++++++.+++.|.+ .....+.++||+|++++|.++++.|. + |.++|||||+++++|||+|
T Consensus 309 F~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~--g~~kVlVAT~iae~GidIp 386 (773)
T 2xau_A 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR--PGRKVVISTNIAETSLTID 386 (773)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS--CCEEEEEECTHHHHTCCCT
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC--CceEEEEeCcHHHhCcCcC
Confidence 77 89999999999975 13447999999999999999999998 7 9999999999999999997
Q ss_pred -ccEEEEccccc---ccCc------ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCHHHH-HhhhcCCCchhhhc
Q 010534 309 -ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL-HKSLLEPSPMLESA 377 (508)
Q Consensus 309 -v~~VI~~~~~~---~d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 377 (508)
|++||+++..+ ||+. ...|.|.++|.||+|||||.++ |.|+.++.++ .+ ..+.+...|++.+.
T Consensus 387 ~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~----G~~~~l~~~~--~~~~~l~~~~~pEi~r~ 460 (773)
T 2xau_A 387 GIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP----GKCFRLYTEE--AFQKELIEQSYPEILRS 460 (773)
T ss_dssp TEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS----EEEEESSCHH--HHHHTSCSSCCCGGGGS
T ss_pred CeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC----CEEEEEecHH--HhcccccccCCCccccC
Confidence 99999999865 7764 2348999999999999999955 9999999765 45 56788999999999
Q ss_pred CCCCcHHHHHHHHhhCCCCCHHHHHHHHHHhcccCCCccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHH
Q 010534 378 GLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQ 457 (508)
Q Consensus 378 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~ 457 (508)
.+...++.++.+. +.++.. |.+.++|.......+++.|..++.+.++..++..++. ++..|+ +|.+..
T Consensus 461 ~L~~~~L~l~~~g-------i~~~~~-f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~-~a~~pl---~p~~~~ 528 (773)
T 2xau_A 461 NLSSTVLELKKLG-------IDDLVH-FDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRL-ASQFPL---DPMLAV 528 (773)
T ss_dssp CCHHHHHHHHHTT-------CCCGGG-CCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHH-HTTSSS---CHHHHH
T ss_pred cHHHHHHHHHHcC-------CCChhh-ccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhh-hccccC---CHHHHH
Confidence 9999988888742 222222 4444555555556666777777777666678888876 899999 678888
Q ss_pred HHHHHHHHHHhcCcccchhhcc
Q 010534 458 GLTQFATNYSKKGIVQLREIFT 479 (508)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~ 479 (508)
+++......|..+.+++..++.
T Consensus 529 ~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 529 MLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHhhcccCchhHHHHHHHhcc
Confidence 8876655555555555544443
No 7
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=5.6e-37 Score=326.05 Aligned_cols=338 Identities=17% Similarity=0.178 Sum_probs=235.4
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH-HHHHcCCCEEEEcchHHHHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVA 118 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~-~~l~~~~~~i~l~P~r~La~q~~ 118 (508)
+++.+.+.++.. ||+..|+++|. +++.+ ++++++++.+|||+|||+++. ..+...+.+||++|+++|+.|+.
T Consensus 28 l~~~l~~~L~~~----fg~~~~rp~Q~~~i~~i--l~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~ 101 (591)
T 2v1x_A 28 WSGKVKDILQNV----FKLEKFRPLQLETINVT--MAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQL 101 (591)
T ss_dssp THHHHHHHHHHT----SCCCSCCTTHHHHHHHH--HTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHH
Confidence 678888888874 49999999999 99988 558999999999999999975 44555678899999999999999
Q ss_pred HHHHhCCCceeeeccccccc------------cCCCcEEEEcceeccc-------------cCCccEEEEccccccCCCC
Q 010534 119 KRLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMADV-------------VSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 119 ~~l~~~g~~~~~~~g~~~~~------------~~~~~~iv~T~e~~~~-------------l~~~~~iViDEah~~~~~~ 173 (508)
+.+.++|+++..++|+.... .....++++||+.+.. +.++++|||||||++++
T Consensus 102 ~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~-- 179 (591)
T 2v1x_A 102 MVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQ-- 179 (591)
T ss_dssp HHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGST--
T ss_pred HHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccc--
Confidence 99999999999998865322 3467899999976521 35899999999999984
Q ss_pred cChHHH----H--HHhcccCCceEE-EccCCcchHHHHHHhHcCCc--EEEEe-eeecC------CCCC-CCC---cc-c
Q 010534 174 RGFSFT----R--ALLGICANELHL-CGDPAAVPLIQQILQVTGDD--VKVQS-YERLS------PLVP-LNV---PL-G 232 (508)
Q Consensus 174 rg~~~~----~--~ll~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~--~~v~~-~~~~~------~~~~-~~~---~l-~ 232 (508)
||+.+. . .+.........+ +..+.+......+....+.. ..+.. +.+.. +... ... .+ .
T Consensus 180 ~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~ 259 (591)
T 2v1x_A 180 WGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVK 259 (591)
T ss_dssp TCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHH
Confidence 463321 1 222222222222 22222223334444444321 11111 11100 0000 000 11 1
Q ss_pred ccccc-CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-c
Q 010534 233 SFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-I 309 (508)
Q Consensus 233 ~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v 309 (508)
.+.+. ..+..|||+ |++.++.+++.|+..+. .+..+||+|++++|..+++.|++ |+.+|||||+++++|||+| |
T Consensus 260 ~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~-~~~~~h~~l~~~~R~~~~~~F~~--g~~~VlVAT~a~~~GID~p~V 336 (591)
T 2v1x_A 260 LINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI-HAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVAFGMGIDKPDV 336 (591)
T ss_dssp HHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSSSEEEECTTSCTTCCCSCE
T ss_pred HHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEechhhcCCCcccc
Confidence 12222 334455555 89999999999999877 89999999999999999999999 9999999999999999997 9
Q ss_pred cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhcCCCchhhhcCCCCcHHHHHH
Q 010534 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSPMLESAGLFPNFDLIYM 388 (508)
Q Consensus 310 ~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~ 388 (508)
++||+++. |.|..+|+||+|||||.|.. |.|+.++.. +...+..++..+..... ....+..
T Consensus 337 ~~VI~~~~---------p~s~~~y~Qr~GRaGR~G~~---g~~i~l~~~~D~~~~~~~~~~~~~~~~------~l~~~~~ 398 (591)
T 2v1x_A 337 RFVIHHSM---------SKSMENYYQESGRAGRDDMK---ADCILYYGFGDIFRISSMVVMENVGQQ------KLYEMVS 398 (591)
T ss_dssp EEEEESSC---------CSSHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHTTTSTTHHH------HHHHHHH
T ss_pred cEEEEeCC---------CCCHHHHHHHhccCCcCCCC---ceEEEEEChHHHHHHHHHHhhhhhhHH------HHHHHHH
Confidence 99999999 55999999999999999987 898888754 34556666654322211 1233334
Q ss_pred HHhhCCCCCHHHHHHHHHH
Q 010534 389 YSRLHPDSSLYGILEHFLE 407 (508)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~ 407 (508)
+........-..++..|.+
T Consensus 399 ~~~~~~~Crr~~ll~~f~e 417 (591)
T 2v1x_A 399 YCQNISKCRRVLMAQHFDE 417 (591)
T ss_dssp HHTCSSSCHHHHHHHHHTC
T ss_pred HHhcccccHHHHHHHHcCC
Confidence 4433445555566665544
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.4e-38 Score=364.50 Aligned_cols=340 Identities=21% Similarity=0.241 Sum_probs=248.5
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----Hc-----------CCCEEEEcchHHHHHHHHHHH
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-----------SSSGIYCGPLRLLAWEVAKRL 121 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~-----------~~~~i~l~P~r~La~q~~~~l 121 (508)
||..|+++|. ++|.+. ..++|++++||||||||++|..++ .+ ++++||++|+|+||.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al-~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAAL-ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHH-TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 6899999999 999885 468899999999999999975444 22 346899999999999999888
Q ss_pred H----hCCCceeeecccccccc---CCCcEEEEcceeccc----------cCCccEEEEccccccCCCCcChHHHHHHhc
Q 010534 122 N----KANVSCDLITGQEREEV---DGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184 (508)
Q Consensus 122 ~----~~g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~~----------l~~~~~iViDEah~~~~~~rg~~~~~~ll~ 184 (508)
. .+|+.|+..+|+..... .++.++|+|||.++. ++.+++|||||+|.+.+ +||..|...+..
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~r 233 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVAR 233 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHH
Confidence 6 35899999999865432 357899999998753 36799999999999987 699988755532
Q ss_pred ------ccCCceEEEccCCcchHHHHHHhHcCCc-----EEEEeeeecCCCCCCC------Cc----------c-ccccc
Q 010534 185 ------ICANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLSPLVPLN------VP----------L-GSFSN 236 (508)
Q Consensus 185 ------l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~~~~~~~------~~----------l-~~l~~ 236 (508)
.....+++++.+++++...+++.|.+.. +.+....|+.|+.... .. + ..+.+
T Consensus 234 l~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 313 (1724)
T 4f92_B 234 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIME 313 (1724)
T ss_dssp HHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHH
Confidence 2356778899999999999999988753 2222333444443210 00 0 11111
Q ss_pred -cCCCCEEEEe-eHHHHHHHHHHHHhc------------------------------------CCCeEEEEcCCCCHHHH
Q 010534 237 -IQTGDCIVTF-SRHAIYRLKKAIESR------------------------------------GKHLCSIVYGSLPPETR 278 (508)
Q Consensus 237 -~~~~~~iv~~-s~~~~~~l~~~L~~~------------------------------------~~~~v~~lhg~l~~~~R 278 (508)
..++.++||+ ||+.|+.+++.|.+. ...++++|||+|++++|
T Consensus 314 ~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 314 HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 2345666666 888888888777542 12259999999999999
Q ss_pred HHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCc--ccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 279 ~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~--~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
..+++.|++ |.++|||||+++++|||+|...||+.+...|+|. ...|++..+|.||+|||||.|.+ ..|.++.+.
T Consensus 394 ~~vE~~F~~--G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d-~~G~~ii~~ 470 (1724)
T 4f92_B 394 TLVEDLFAD--KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD-TKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHT--TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC-SCEEEEEEE
T ss_pred HHHHHHHHC--CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC-CccEEEEEe
Confidence 999999999 9999999999999999999999999888899886 45689999999999999999875 457765554
Q ss_pred -CCCHHHHHhhhcCCCchhhhcCCCCcHHHHHHHHhhCCCCCHHHHHH
Q 010534 357 -SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILE 403 (508)
Q Consensus 357 -~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 403 (508)
.++...+..++..+.| +.+.-.....+.+.+-.....-.+..++.+
T Consensus 471 ~~~~~~~~~~ll~~~~p-ieS~l~~~l~d~L~aeI~~g~i~~~~~a~~ 517 (1724)
T 4f92_B 471 SHGELQYYLSLLNQQLP-IESQMVSKLPDMLNAEIVLGNVQNAKDAVN 517 (1724)
T ss_dssp ESTTCCHHHHHTTTCSC-CCCCTTTTHHHHHHHHHHHTSCCBHHHHHH
T ss_pred cchhHHHHHHHHcCCCc-chhhccccHHHHHHHHHHHhhcCCHHHHHH
Confidence 4445677777776554 333322333333333222222344555544
No 9
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.3e-37 Score=327.54 Aligned_cols=307 Identities=17% Similarity=0.207 Sum_probs=223.7
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH-HHHHcCCCEEEEcchHHHHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVA 118 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~-~~l~~~~~~i~l~P~r~La~q~~ 118 (508)
+++.+.+.+++. +|+..|++.|. +++.+ ++++++++.+|||||||+++. ..+...+.++|++|+++|+.|+.
T Consensus 9 L~~~~~~~l~~~----~g~~~~r~~Q~~~i~~i--l~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 9 LESGAKQVLQET----FGYQQFRPGQEEIIDTV--LSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHHHHHT----TCCSSCCTTHHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHH
Confidence 567777888773 49999999999 99988 458899999999999999974 44556678999999999999999
Q ss_pred HHHHhCCCceeeeccccccc----------cCCCcEEEEcceeccc--------cCCccEEEEccccccCCCCcChHHHH
Q 010534 119 KRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTR 180 (508)
Q Consensus 119 ~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~rg~~~~~ 180 (508)
+++.++|+++..++|..... .....++++||+.+.. ..++++|||||||+++ +||+.+..
T Consensus 83 ~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~--~~g~~fr~ 160 (523)
T 1oyw_A 83 DQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS--QWGHDFRP 160 (523)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC--TTSSCCCH
T ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC--cCCCccHH
Confidence 99999999999888764321 2357899999987632 2689999999999998 45643211
Q ss_pred H---H----hcccCCceEEEccCCcchHHHHHHhHcCC--cE-EEEeeeecCC------CCCC-CCccccccccCCCCEE
Q 010534 181 A---L----LGICANELHLCGDPAAVPLIQQILQVTGD--DV-KVQSYERLSP------LVPL-NVPLGSFSNIQTGDCI 243 (508)
Q Consensus 181 ~---l----l~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~-~v~~~~~~~~------~~~~-~~~l~~l~~~~~~~~i 243 (508)
. + -..+...+..+..+........+....+. .. .+..+.+... .... ...+..+.+...+..|
T Consensus 161 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp HHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEE
Confidence 1 1 11222222333333333344555555432 11 1111111100 0000 0111222233445666
Q ss_pred EEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccccc
Q 010534 244 VTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD 321 (508)
Q Consensus 244 v~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d 321 (508)
||+ |++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+| +++||+++.
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~-~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlVaT~a~~~GiD~p~v~~VI~~~~---- 313 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGI-SAAAYHAGLENNVRADVQEKFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI---- 313 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECTTSCTTTCCTTCCEEEESSC----
T ss_pred EEeCCHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEechhhCCCCccCccEEEEECC----
Confidence 666 89999999999999876 89999999999999999999999 9999999999999999997 999999999
Q ss_pred CcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhhhcCC
Q 010534 322 GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEP 370 (508)
Q Consensus 322 ~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~~~~~ 370 (508)
|.|..+|+||+|||||.|.. |.|+.++.. +...++.+++..
T Consensus 314 -----p~s~~~y~Qr~GRaGR~g~~---~~~~l~~~~~d~~~~~~~~~~~ 355 (523)
T 1oyw_A 314 -----PRNIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEEK 355 (523)
T ss_dssp -----CSSHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHHHTS
T ss_pred -----CCCHHHHHHHhccccCCCCC---ceEEEEeCHHHHHHHHHHHhcc
Confidence 56999999999999999987 888887654 345666666543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.7e-37 Score=312.83 Aligned_cols=305 Identities=16% Similarity=0.198 Sum_probs=218.8
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r 111 (508)
.+++.+.+.+... ++..|+++|. +++.+...+++++++++|||||||++++.++. .+++++|++|++
T Consensus 11 ~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 85 (395)
T 3pey_A 11 GLAPELLKGIYAM-----KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR 85 (395)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH
Confidence 3789999999998 9999999999 99998654449999999999999999866554 245789999999
Q ss_pred HHHHHHHHHHHhC----CCceeeecccccc--ccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChH
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQERE--EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFS 177 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~--~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~ 177 (508)
+|+.|++++++++ ++.+...+|+... ...+..++++|++.+. .+.++++||+||||++.+. .++.
T Consensus 86 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~ 164 (395)
T 3pey_A 86 ELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ-QGLG 164 (395)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHS-TTHH
T ss_pred HHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCc-cccH
Confidence 9999999999864 4556666655432 2236789999997652 3578999999999998752 2332
Q ss_pred -HHHHHhcccCCceEEEccCCc-chHHHHHHhHcC-CcEEEEeeeecCCCCCC-------------CCcccc-ccccCCC
Q 010534 178 -FTRALLGICANELHLCGDPAA-VPLIQQILQVTG-DDVKVQSYERLSPLVPL-------------NVPLGS-FSNIQTG 240 (508)
Q Consensus 178 -~~~~ll~l~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~v~~~~~~~~~~~~-------------~~~l~~-l~~~~~~ 240 (508)
....+........++++.+++ .+....+..... ....+............ ...+.. +.....+
T Consensus 165 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (395)
T 3pey_A 165 DQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIG 244 (395)
T ss_dssp HHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSS
T ss_pred HHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCC
Confidence 122233333333444443333 344444444332 22222111111110000 001111 1222345
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~ 318 (508)
.++||+ +++.++.+++.|++.+. .+..+||++++++|.++++.|++ |+.+|||||+++++|+|+| +++||+++.+
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFRE--GRSKVLITTNVLARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHT--TSCCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHHHHC--CCCCEEEECChhhcCCCcccCCEEEEcCCC
Confidence 666666 89999999999998876 89999999999999999999999 9999999999999999997 9999999985
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.+.. .+.+..+|+||+|||||.|.. |.++.+..++
T Consensus 322 ~~~~---~~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 356 (395)
T 3pey_A 322 TLAN---GQADPATYIHRIGRTGRFGRK---GVAISFVHDK 356 (395)
T ss_dssp BCTT---SSBCHHHHHHHHTTSSCTTCC---EEEEEEECSH
T ss_pred CCCc---CCCCHHHhhHhccccccCCCC---ceEEEEEech
Confidence 4321 134899999999999999987 8888887653
No 11
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=321.87 Aligned_cols=311 Identities=13% Similarity=0.131 Sum_probs=212.2
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r 111 (508)
.+++.+.+.+... ++..|+++|. +++.+ ++++++++.+|||||||++++.++. .+++++|++|++
T Consensus 46 ~l~~~~~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 46 NLSESLLRGIYAY-----GFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHhHHH--hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 4788999999988 9999999999 99988 4588999999999999999866654 345789999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc-------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (508)
+|+.|++++++++ +..+...+|+.... ..+..++++|++.+. .+..+++||+||||++.+.
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 198 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR 198 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhcc
Confidence 9999999999864 66777777754322 146789999996642 2467999999999998765
Q ss_pred CcChHHHHHHhcccCCceEEEccCCc-chHHHHHHhH-cCCcEEEEeeeecCCCC----------CCC---Ccc-ccccc
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAA-VPLIQQILQV-TGDDVKVQSYERLSPLV----------PLN---VPL-GSFSN 236 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~-~~~~~~l~~~-~~~~~~v~~~~~~~~~~----------~~~---~~l-~~l~~ 236 (508)
.++..+...+..+.. ..++++.+++ .+....+... ......+.......... ... ..+ ..+..
T Consensus 199 ~~~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (414)
T 3eiq_A 199 GFKDQIYDIFQKLNS-NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 277 (414)
T ss_dssp TTHHHHHHHHTTSCT-TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS
T ss_pred CcHHHHHHHHHhCCC-CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh
Confidence 444444555544444 3444444444 3444444433 22322221111111100 000 011 11222
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE
Q 010534 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
...+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDF-TVSAMHGDMDQKERDVIMREFRS--GSSRVLITTDLLARGIDVQQVSLVIN 354 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTC-CCEEC---CHHHHHHHHHHHHSC--C---CEEECSSCC--CCGGGCSCEEE
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHHHHc--CCCcEEEECCccccCCCccCCCEEEE
Confidence 3445666666 89999999999998876 89999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-H---HHHhhhcCCCch
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-P---LLHKSLLEPSPM 373 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-~---~~~~~~~~~~~~ 373 (508)
++. |.+..+|.||+|||||.|.. |.|+.++.++. . .+.++++....+
T Consensus 355 ~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (414)
T 3eiq_A 355 YDL---------PTNRENYIHRIGRGGRFGRK---GVAINMVTEEDKRTLRDIETFYNTSIEE 405 (414)
T ss_dssp SSC---------CSSTHHHHHHSCCC----------CEEEEECSTHHHHHHHHHHHTTCCCEE
T ss_pred eCC---------CCCHHHhhhhcCcccCCCCC---ceEEEEEcHHHHHHHHHHHHHHcCCccc
Confidence 998 66999999999999999987 88888877653 3 334444444443
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=319.62 Aligned_cols=298 Identities=18% Similarity=0.153 Sum_probs=215.7
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc------------------
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------------ 100 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~------------------ 100 (508)
.+++.+.+.+... ++..|+++|. ++|.+ ++++++++.+|||||||++++.++..
T Consensus 21 ~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 21 EMGEIIMGNIELT-----RYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 3789999999988 9999999999 99988 56899999999999999987554431
Q ss_pred -------CCCEEEEcchHHHHHHHHHHHHhC----CCceeeecccccc------ccCCCcEEEEcceecc--------cc
Q 010534 101 -------SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VV 155 (508)
Q Consensus 101 -------~~~~i~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l 155 (508)
.++++|++|+++|+.|++++++++ ++.+..++|+... ...+..++++|++.+. .+
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCC
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcCh
Confidence 146899999999999999998853 6777888876532 1246789999997653 25
Q ss_pred CCccEEEEccccccCCCCcChHHHHHHhc--ccC-CceEEEccCCc-chHHHHHHh-HcCCcEEEEeeeecCCC------
Q 010534 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLG--ICA-NELHLCGDPAA-VPLIQQILQ-VTGDDVKVQSYERLSPL------ 224 (508)
Q Consensus 156 ~~~~~iViDEah~~~~~~rg~~~~~~ll~--l~~-~~~~~~~~~~~-~~~~~~l~~-~~~~~~~v~~~~~~~~~------ 224 (508)
..+++||+||||++.+..++..+..++.. +.. ...++++.+++ .+....+.. ..+....+.........
T Consensus 174 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 253 (417)
T 2i4i_A 174 DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 253 (417)
T ss_dssp TTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEE
T ss_pred hhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEE
Confidence 78999999999999865434444444432 221 12334443333 333444443 33332222111000000
Q ss_pred ------CCCCCcc-cccccc-CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEE
Q 010534 225 ------VPLNVPL-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (508)
Q Consensus 225 ------~~~~~~l-~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~il 295 (508)
......+ ..+... ..+.++||+ +++.++.+++.|++.+. .+..+||++++++|.++++.|++ |+.+||
T Consensus 254 ~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vl 330 (417)
T 2i4i_A 254 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS--GKSPIL 330 (417)
T ss_dssp EEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHH--TSSCEE
T ss_pred EEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-CeeEecCCCCHHHHHHHHHHHHc--CCCCEE
Confidence 0000111 112222 234456666 89999999999998876 89999999999999999999999 999999
Q ss_pred Eeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 296 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 296 VaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|||+++++|+|+| +++||+++. |.+..+|+||+|||||.|.. |.|+.++.++
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 383 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDL---------PSDIEEYVHRIGRTGRVGNL---GLATSFFNER 383 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSC---------CSSHHHHHHHHTTBCC--CC---EEEEEEECGG
T ss_pred EECChhhcCCCcccCCEEEEEcC---------CCCHHHHHHhcCccccCCCC---ceEEEEEccc
Confidence 9999999999997 999999998 66999999999999999987 9998887654
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-37 Score=319.83 Aligned_cols=312 Identities=16% Similarity=0.134 Sum_probs=224.0
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..|+++|. +++.+ ++++++++.+|||||||++++.++. .+++++|++|++
T Consensus 43 ~l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 43 GLREDLLRGIYAY-----GFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 3789999999988 9999999999 99988 4588999999999999999876664 245889999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (508)
+|+.|+++.+.++ ++.+...+|+.... ..+..++++|++.+. .+.+++++|+||||++.+..
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 9999999999864 56777777765322 135689999996542 24679999999999998653
Q ss_pred cChHHHHHHhcccCCceEEEccCCcc-hHHHHHHh-HcCCcEEEEeeeecCCCCC-------------CCCcc-cccccc
Q 010534 174 RGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ-VTGDDVKVQSYERLSPLVP-------------LNVPL-GSFSNI 237 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~-~~~~~~~v~~~~~~~~~~~-------------~~~~l-~~l~~~ 237 (508)
+...+..++..+.. ..++++.+++. +....+.. .......+........... ....+ ..+...
T Consensus 196 ~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 274 (410)
T 2j0s_A 196 FKEQIYDVYRYLPP-ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 274 (410)
T ss_dssp THHHHHHHHTTSCT-TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCcc-CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc
Confidence 33333344433333 33333333333 33333322 2222222211110000000 00011 111222
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEc
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~ 315 (508)
..+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMPQKERESIMKEFRS--GASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHH--TSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCC-ceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEECChhhCcCCcccCCEEEEE
Confidence 345666666 89999999999998876 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC-H---HHHHhhhcCCCchh
Q 010534 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-L---PLLHKSLLEPSPML 374 (508)
Q Consensus 316 ~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~-~---~~~~~~~~~~~~~i 374 (508)
+. |.+...|+||+||+||.|.. |.|+.+..++ . ..+++++....+++
T Consensus 352 ~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 352 DL---------PNNRELYIHRIGRSGRYGRK---GVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp SC---------CSSHHHHHHHHTTSSGGGCC---EEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred CC---------CCCHHHHHHhcccccCCCCc---eEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 98 66999999999999999987 9988776544 2 34555555555543
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.5e-37 Score=314.85 Aligned_cols=298 Identities=17% Similarity=0.163 Sum_probs=218.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..|+++|. +++.+. +++++++.+|||||||++++.++. .+.+++|++|++
T Consensus 27 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i~--~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 27 YLKRELLMGIFEA-----GFEKPSPIQEEAIPVAI--TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHH--HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 3789999999998 9999999999 999885 478899999999999999866554 234789999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (508)
+|+.|++++++++ ++.+...+|+.... ..+..++++|++.+. .+.++++||+||||++.+..
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 9999999999854 67788888765422 246789999997652 35789999999999987643
Q ss_pred cChHHHHHHhcccCCceEEEccCCcchHHHH-HHhHcCCcEEEEeeeecCCCC-----------CCCCcc-ccccccCCC
Q 010534 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQ-ILQVTGDDVKVQSYERLSPLV-----------PLNVPL-GSFSNIQTG 240 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~v~~~~~~~~~~-----------~~~~~l-~~l~~~~~~ 240 (508)
++..+..++..+......+..+++....... +....+....+.......... .....+ ..+.....+
T Consensus 180 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~ 259 (400)
T 1s2m_A 180 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQIN 259 (400)
T ss_dssp HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCCC
Confidence 3333333333333332233333333233333 334444443332211110000 000011 111223445
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccc
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~ 318 (508)
.++||+ +++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~~~~Vi~~~~- 335 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDLGY-SCYYSHARMKQQERNKVFHEFRQ--GKVRTLVCSDLLTRGIDIQAVNVVINFDF- 335 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHT--TSSSEEEESSCSSSSCCCTTEEEEEESSC-
T ss_pred cEEEEEecHHHHHHHHHHHHhcCC-CeEEecCCCCHHHHHHHHHHHhc--CCCcEEEEcCccccCCCccCCCEEEEeCC-
Confidence 666666 89999999999998876 89999999999999999999999 9999999999999999997 999999998
Q ss_pred cccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 319 ~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|.+..+|+||+|||||.|.. |.|+.++..+
T Consensus 336 --------p~s~~~~~Qr~GR~gR~g~~---g~~~~l~~~~ 365 (400)
T 1s2m_A 336 --------PKTAETYLHRIGRSGRFGHL---GLAINLINWN 365 (400)
T ss_dssp --------CSSHHHHHHHHCBSSCTTCC---EEEEEEECGG
T ss_pred --------CCCHHHHHHhcchhcCCCCC---ceEEEEeccc
Confidence 66999999999999999987 9998887654
No 15
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.9e-37 Score=313.19 Aligned_cols=321 Identities=13% Similarity=0.140 Sum_probs=224.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+.+. |+..|+++|. +++.+...+++++++++|||||||++++.++.. +++++|++|++
T Consensus 31 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 31 RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 4789999999998 9999999999 999986544599999999999999998665542 23789999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc---cCCCcEEEEcceecc---------ccCCccEEEEccccccCCCCc
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~r 174 (508)
+|+.|++++++++ +..+....|+.... .....++++|++.+. .+.++++||+||||++.+...
T Consensus 106 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 185 (412)
T 3fht_A 106 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185 (412)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC
Confidence 9999999888864 45666666654322 235689999996652 237799999999999875322
Q ss_pred ChHHHHHHhcccCCceEEEccCCcc-hHHHHHHhH-cCCcEEEEeeeecCCCCCC-------------CCcc-ccccccC
Q 010534 175 GFSFTRALLGICANELHLCGDPAAV-PLIQQILQV-TGDDVKVQSYERLSPLVPL-------------NVPL-GSFSNIQ 238 (508)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~v~~~~~~~~~~~~-------------~~~l-~~l~~~~ 238 (508)
.......+........++++.+++. +....+... .+....+............ ...+ ..+....
T Consensus 186 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (412)
T 3fht_A 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT 265 (412)
T ss_dssp THHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcC
Confidence 2233344444444444444444443 333334433 3332222111100000000 0000 1111224
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHT--TSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHHHHHHHC--CCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 45666666 89999999999999876 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH-----HHHHhhhcCCCchh
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-----PLLHKSLLEPSPML 374 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~-----~~~~~~~~~~~~~i 374 (508)
.+.... .+.+..+|+||+|||||.|.. |.|+.+...+. ..+++.++....++
T Consensus 343 ~p~~~~---~~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 399 (412)
T 3fht_A 343 LPVDKD---GNPDNETYLHRIGRTGRFGKR---GLAVNMVDSKHSMNILNRIQEHFNKKIERL 399 (412)
T ss_dssp CCBCSS---SSBCHHHHHHHHTTSSCTTCC---EEEEEEECSHHHHHHHHHHHHHHTCCCEEC
T ss_pred CCCCCC---CCcchheeecccCcccCCCCC---ceEEEEEcChhhHHHHHHHHHHHCCccccC
Confidence 853110 014789999999999999987 99988876542 34444555554443
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.3e-37 Score=308.71 Aligned_cols=298 Identities=17% Similarity=0.141 Sum_probs=216.7
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc------CCCEEEEcchHH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRL 112 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~------~~~~i~l~P~r~ 112 (508)
.+++.+.+.+.+. ++..|++.|. +++.+.. .++++++.+|||||||++++.++.. +.+++|++|+++
T Consensus 12 ~l~~~~~~~l~~~-----g~~~~~~~Q~~~i~~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 12 NLSDNILNAIRNK-----GFEKPTDIQMKVIPLFLN-DEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp SCCHHHHHHHHHH-----TCCSCCHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhC-CCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 3789999999998 9999999999 9998853 3379999999999999997665542 457899999999
Q ss_pred HHHHHHHHHHhC----CCceeeeccccccc-----cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcC
Q 010534 113 LAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRG 175 (508)
Q Consensus 113 La~q~~~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg 175 (508)
|+.|+++++.++ ++.+...+|+.... ..+..++++|++.+. .+.+++++|+||||++.+..+.
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 165 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 165 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchH
Confidence 999999999864 56777777765321 236789999997653 2578999999999999765333
Q ss_pred hHHHHHHhcccCCceEEEccCCcchHHHHHH-hHcCCcEEEEeeeecCCCC---------CCCCccccccccCCCCEEEE
Q 010534 176 FSFTRALLGICANELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERLSPLV---------PLNVPLGSFSNIQTGDCIVT 245 (508)
Q Consensus 176 ~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~~~~~~~~---------~~~~~l~~l~~~~~~~~iv~ 245 (508)
..+...+..+......+..+++..+...... ...+. ............. .....+..+.....+..+||
T Consensus 166 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf 244 (367)
T 1hv8_A 166 KDVEKILNACNKDKRILLFSATMPREILNLAKKYMGD-YSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVF 244 (367)
T ss_dssp HHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCS-EEEEECCSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEE
T ss_pred HHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCC-CeEEEecCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEE
Confidence 3334444333333333333333333333333 33333 2222111111110 00011111122345566666
Q ss_pred e-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCc
Q 010534 246 F-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGV 323 (508)
Q Consensus 246 ~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~ 323 (508)
+ +++.++.+++.|++.+. .+..+||+++.++|.++++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 245 ~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~------ 315 (367)
T 1hv8_A 245 CKTKRDTKELASMLRDIGF-KAGAIHGDLSQSQREKVIRLFKQ--KKIRILIATDVMSRGIDVNDLNCVINYHL------ 315 (367)
T ss_dssp CSSHHHHHHHHHHHHHTTC-CEEEECSSSCHHHHHHHHHHHHT--TSSSEEEECTTHHHHCCCSCCSEEEESSC------
T ss_pred ECCHHHHHHHHHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHc--CCCeEEEECChhhcCCCcccCCEEEEecC------
Confidence 6 89999999999998876 89999999999999999999999 9999999999999999997 999999988
Q ss_pred ccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 324 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 324 ~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|.+..+|.||+|||||.|.. |.++.++.++
T Consensus 316 ---~~s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~ 345 (367)
T 1hv8_A 316 ---PQNPESYMHRIGRTGRAGKK---GKAISIINRR 345 (367)
T ss_dssp ---CSCHHHHHHHSTTTCCSSSC---CEEEEEECTT
T ss_pred ---CCCHHHhhhcccccccCCCc---cEEEEEEcHH
Confidence 66999999999999999976 7777766543
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.4e-37 Score=312.30 Aligned_cols=297 Identities=16% Similarity=0.166 Sum_probs=216.5
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..|+++|. +++.+ ++++++++.+|||+|||++++.++.. .++++|++|++
T Consensus 14 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 14 LLKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp CCCHHHHHHHHHH-----SCCSCCHHHHHHHHHH--TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 3789999999998 9999999999 99988 55899999999999999998655532 34789999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc-------cCCCcEEEEcceecc--------ccCCccEEEEccccccCC
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~ 171 (508)
+|+.|+++.+.++ ++.+..++|+.... .....++++|++.+. .+.++++||+||||++.+
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 9999999998864 78888888865322 124689999997663 357899999999999975
Q ss_pred CCcChH-HHHHHhcccCCceEEEccCCc-chHHHHHH-hHcCCcEEEEeeeecC-CCCCC------------CCcc-ccc
Q 010534 172 KTRGFS-FTRALLGICANELHLCGDPAA-VPLIQQIL-QVTGDDVKVQSYERLS-PLVPL------------NVPL-GSF 234 (508)
Q Consensus 172 ~~rg~~-~~~~ll~l~~~~~~~~~~~~~-~~~~~~l~-~~~~~~~~v~~~~~~~-~~~~~------------~~~l-~~l 234 (508)
. .++. ....++.......++++.+++ .+....+. ...+....+....... ..... ...+ ..+
T Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 245 (391)
T 1xti_A 167 Q-LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245 (391)
T ss_dssp S-HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH
T ss_pred c-cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHH
Confidence 2 1221 112233333333333333333 23333333 3333333322111000 00000 0011 112
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEE
Q 010534 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (508)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~V 312 (508)
.....+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKD--FQRRILVATNLFGRGMDIERVNIA 322 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TCCSEEEESCCCSSCBCCTTEEEE
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHhc--CCCcEEEECChhhcCCCcccCCEE
Confidence 223455666666 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 313 I~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|+++. |.+..+|.||+||+||.|.. |.|+.+..++
T Consensus 323 i~~~~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 357 (391)
T 1xti_A 323 FNYDM---------PEDSDTYLHRVARAGRFGTK---GLAITFVSDE 357 (391)
T ss_dssp EESSC---------CSSHHHHHHHHCBCSSSCCC---CEEEEEECSH
T ss_pred EEeCC---------CCCHHHHHHhcccccCCCCc---eEEEEEEccc
Confidence 99998 66999999999999999977 8888877654
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6e-37 Score=305.30 Aligned_cols=299 Identities=18% Similarity=0.210 Sum_probs=216.9
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-cCCCEEEEcchHHHHHHHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-SSSSGIYCGPLRLLAWEVA 118 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-~~~~~i~l~P~r~La~q~~ 118 (508)
+++.+.+.+... |+..|++.|. +++.+ .+++++++.+|||||||++++.++. .+++++|++|+++|+.|++
T Consensus 1 l~~~i~~~l~~~-----g~~~l~~~Q~~~i~~i--~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~ 73 (337)
T 2z0m_A 1 MNEKIEQAIREM-----GFKNFTEVQSKTIPLM--LQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVA 73 (337)
T ss_dssp CCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH
Confidence 467888888888 9999999999 99988 4588999999999999999866654 4678999999999999999
Q ss_pred HHHHhC----CCceeeeccccccc-----cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHH
Q 010534 119 KRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (508)
Q Consensus 119 ~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ 181 (508)
++++++ +..+..++|+.... ..+..++++|++.+. .+.++++||+||||++.+..+...+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 74 SHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999854 57777777764321 235789999997652 2478899999999999755333333344
Q ss_pred HhcccCCceEEEccCCcchHHHHHH-hHcCCcEEEEeeeecC-------CCCCC-CCccccccccCCCCEEEEe-eHHHH
Q 010534 182 LLGICANELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYERLS-------PLVPL-NVPLGSFSNIQTGDCIVTF-SRHAI 251 (508)
Q Consensus 182 ll~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~v~~~~~~~-------~~~~~-~~~l~~l~~~~~~~~iv~~-s~~~~ 251 (508)
+.........+..+++..+...... ........+....... ..... ...+..+.....+.++||+ +++.+
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~ 233 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRV 233 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHH
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHH
Confidence 4334433333333433333333333 3333322221110000 00000 1111223334556677777 89999
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCCh
Q 010534 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 330 (508)
Q Consensus 252 ~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~ 330 (508)
+.+++.|+ .+..+||+++.++|.++++.|++ |+.+|||||+++++|+|+| +++||+++. |.+.
T Consensus 234 ~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~---------~~s~ 297 (337)
T 2z0m_A 234 AKLVRLFD-----NAIELRGDLPQSVRNRNIDAFRE--GEYDMLITTDVASRGLDIPLVEKVINFDA---------PQDL 297 (337)
T ss_dssp HHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECHHHHTTCCCCCBSEEEESSC---------CSSH
T ss_pred HHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHc--CCCcEEEEcCccccCCCccCCCEEEEecC---------CCCH
Confidence 99888775 58899999999999999999999 9999999999999999997 999999998 6699
Q ss_pred hhHHhhhccCCCCCCCCCcEEEEEecCCCHHHHHh
Q 010534 331 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (508)
Q Consensus 331 ~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~~~~~~ 365 (508)
.+|+||+|||||.|.. |.|+.+...+...+++
T Consensus 298 ~~~~Q~~GR~gR~g~~---g~~~~~~~~~~~~~~~ 329 (337)
T 2z0m_A 298 RTYIHRIGRTGRMGRK---GEAITFILNEYWLEKE 329 (337)
T ss_dssp HHHHHHHTTBCGGGCC---EEEEEEESSCHHHHHH
T ss_pred HHhhHhcCccccCCCC---ceEEEEEeCcHHHHHH
Confidence 9999999999999987 8887777655444443
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.9e-36 Score=323.85 Aligned_cols=309 Identities=15% Similarity=0.113 Sum_probs=216.9
Q ss_pred ccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cC-------CCEEE
Q 010534 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-------SSGIY 106 (508)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~-------~~~i~ 106 (508)
..+++.+.+.+... |+..|+++|. +++.+...+++++++.+|||||||++++.++. .. .+++|
T Consensus 26 ~~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lv 100 (579)
T 3sqw_A 26 GVLDKEIHKAITRM-----EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 100 (579)
T ss_dssp TSSCHHHHHHHHTT-----TCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEE
T ss_pred CCCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEE
Confidence 35899999999998 9999999999 99988644689999999999999999654443 22 37899
Q ss_pred EcchHHHHHHHHHHHHhC--------CCceeeeccccccc-------cCCCcEEEEcceecc---------ccCCccEEE
Q 010534 107 CGPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE-------VDGAKHRAVTVEMAD---------VVSDYDCAV 162 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~--------g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~---------~l~~~~~iV 162 (508)
++||++|+.|+++.+.++ ...+..+.|+.... ..+..++|+||+.+. .+..+++||
T Consensus 101 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lV 180 (579)
T 3sqw_A 101 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 180 (579)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEE
Confidence 999999999999999863 23455555553321 125789999997652 357899999
Q ss_pred EccccccCCCCcChHHHHHHhccc------CCceEEE-ccCCcchHHHHHHhHcCCc-EEEEeee--ecCCCCCC-----
Q 010534 163 IDEIQMLGCKTRGFSFTRALLGIC------ANELHLC-GDPAAVPLIQQILQVTGDD-VKVQSYE--RLSPLVPL----- 227 (508)
Q Consensus 163 iDEah~~~~~~rg~~~~~~ll~l~------~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~v~~~~--~~~~~~~~----- 227 (508)
|||||++.+..++..+..++..+. ....+++ .+++..+.+..+....... ..+.... ...+....
T Consensus 181 iDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (579)
T 3sqw_A 181 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 260 (579)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceE
Confidence 999999986533333333332221 1123333 3333334445554433322 2211110 00000000
Q ss_pred -------C----Cccc----cccc-cCCCCEEEEe-eHHHHHHHHHHHHhcC--CCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010534 228 -------N----VPLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDA 288 (508)
Q Consensus 228 -------~----~~l~----~l~~-~~~~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~lhg~l~~~~R~~~~~~f~~~ 288 (508)
. ..+. .+.. ...+.+|||+ |++.++.+++.|++.. ...+..+||+|++++|..+++.|++
T Consensus 261 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~- 339 (579)
T 3sqw_A 261 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK- 339 (579)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-
T ss_pred EEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc-
Confidence 0 0000 1111 2244566666 8999999999998761 3389999999999999999999999
Q ss_pred CCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC-HHHHHhh
Q 010534 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKS 366 (508)
Q Consensus 289 ~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~-~~~~~~~ 366 (508)
|+.+|||||+++++|||+| +++||+++. |.+..+|+||+|||||.|.. |.|+.++..+ ...++.+
T Consensus 340 -g~~~vLVaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 340 -DESGILVCTDVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGKE---GSSVLFICKDELPFVREL 406 (579)
T ss_dssp -CSSEEEEECGGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTCC---EEEEEEEEGGGHHHHHHH
T ss_pred -CCCeEEEEcchhhcCCCcccCCEEEEcCC---------CCCHHHhhhhccccccCCCC---ceEEEEEcccHHHHHHHH
Confidence 9999999999999999997 999999999 66999999999999999987 8887776544 3444444
No 20
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-36 Score=354.72 Aligned_cols=324 Identities=19% Similarity=0.211 Sum_probs=246.5
Q ss_pred ccCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----Hc--CCCEEEEcchH
Q 010534 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES--SSSGIYCGPLR 111 (508)
Q Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~--~~~~i~l~P~r 111 (508)
..+.+...+.+... +|..|+++|. +++.+. ..+++++++||||||||++|..++ .+ +++++|++|+|
T Consensus 909 s~L~~~~~e~l~~~-----~f~~fnpiQ~q~~~~l~-~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~r 982 (1724)
T 4f92_B 909 SALRNSAFESLYQD-----KFPFFNPIQTQVFNTVY-NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPME 982 (1724)
T ss_dssp GGSCCHHHHTTTTT-----TCSBCCHHHHHHHHHHH-SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCH
T ss_pred ccccCHHHHHHHHh-----cCCCCCHHHHHHHHHHh-cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChH
Confidence 45566666777766 7999999999 998875 467899999999999999974443 32 46899999999
Q ss_pred HHHHHHHHHHHh-----CCCceeeeccccccc---cCCCcEEEEcceeccc----------cCCccEEEEccccccCCCC
Q 010534 112 LLAWEVAKRLNK-----ANVSCDLITGQEREE---VDGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 112 ~La~q~~~~l~~-----~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~----------l~~~~~iViDEah~~~~~~ 173 (508)
+||.|.++.+.+ .|++|+.++|+.... ..+..++|+|||.++. ++++++||+||+|.+.+ +
T Consensus 983 aLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~ 1061 (1724)
T 4f92_B 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-E 1061 (1724)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-T
T ss_pred HHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-C
Confidence 999999998863 478899999976533 2367899999988643 36799999999999987 5
Q ss_pred cChHHHHHHhcc------cCCceEEEccCCcchHHHHHHhHcCCc----EEEEeeeecCCCCCCC---------------
Q 010534 174 RGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDD----VKVQSYERLSPLVPLN--------------- 228 (508)
Q Consensus 174 rg~~~~~~ll~l------~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~v~~~~~~~~~~~~~--------------- 228 (508)
||..+...+..+ ....+++++.+++++...++..|.+.. +.+....|+.++....
T Consensus 1062 rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1062 NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhh
Confidence 888876555332 345678899899999999999988753 1222233444432110
Q ss_pred -Ccc-ccccc-cCCCCEEEEe-eHHHHHHHHHHHHhc---------------------------------CCCeEEEEcC
Q 010534 229 -VPL-GSFSN-IQTGDCIVTF-SRHAIYRLKKAIESR---------------------------------GKHLCSIVYG 271 (508)
Q Consensus 229 -~~l-~~l~~-~~~~~~iv~~-s~~~~~~l~~~L~~~---------------------------------~~~~v~~lhg 271 (508)
..+ ..+.+ ...+.++||+ |++.|+.++..|... ...+|++|||
T Consensus 1142 ~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa 1221 (1724)
T 4f92_B 1142 AKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE 1221 (1724)
T ss_dssp HHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT
T ss_pred cchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC
Confidence 000 01111 1345566666 899998887766431 0125999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCc--ccccCChhhHHhhhccCCCCCCCCCc
Q 010534 272 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKFPV 349 (508)
Q Consensus 272 ~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~--~~~p~s~~~~~Qr~GRagR~g~~~~~ 349 (508)
+|++++|..+++.|++ |.++|||||+++++|||+|...||+.+..+|||. +..|.+..+|.||+|||||.|.+ ..
T Consensus 1222 gL~~~~R~~VE~lF~~--G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d-~~ 1298 (1724)
T 4f92_B 1222 GLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD-DE 1298 (1724)
T ss_dssp TSCHHHHHHHHHHHHH--TSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC-SC
T ss_pred CCCHHHHHHHHHHHHC--CCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC-Cc
Confidence 9999999999999999 9999999999999999999999999999999986 45688999999999999999985 56
Q ss_pred EEEEEecCCC-HHHHHhhhcCCCc
Q 010534 350 GEVTCLDSED-LPLLHKSLLEPSP 372 (508)
Q Consensus 350 G~~~~~~~~~-~~~~~~~~~~~~~ 372 (508)
|.|+.+..+. ...+++++..+.|
T Consensus 1299 G~avll~~~~~~~~~~~ll~~~~p 1322 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFFKKFLYEPLP 1322 (1724)
T ss_dssp EEEEEEEEGGGHHHHHHHTTSCBC
T ss_pred eEEEEEecchHHHHHHHHhCCCCc
Confidence 9888776554 4677777776554
No 21
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.1e-36 Score=322.98 Aligned_cols=308 Identities=15% Similarity=0.118 Sum_probs=217.4
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcC-------CCEEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS-------SSGIYC 107 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~-------~~~i~l 107 (508)
.+++.+.+.+... |+..|+++|. +++.+...+++++++++|||||||++++.++ .+. .+++|+
T Consensus 78 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil 152 (563)
T 3i5x_A 78 VLDKEIHKAITRM-----EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIV 152 (563)
T ss_dssp SSCHHHHHHHHTT-----CCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEE
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEE
Confidence 4888999999988 9999999999 9998864468999999999999999965444 333 378999
Q ss_pred cchHHHHHHHHHHHHhC--------CCceeeeccccccc-------cCCCcEEEEcceecc---------ccCCccEEEE
Q 010534 108 GPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE-------VDGAKHRAVTVEMAD---------VVSDYDCAVI 163 (508)
Q Consensus 108 ~P~r~La~q~~~~l~~~--------g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~---------~l~~~~~iVi 163 (508)
+||++|+.|++++++++ +..+..++|+.... ..+..++|+||+.+. .+..+++|||
T Consensus 153 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 153 APTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 99999999999999863 34456666654321 226789999997653 3578999999
Q ss_pred ccccccCCCCcChHHHHHHhccc------CCceEEEc-cCCcchHHHHHHhHcCCc-EEEEee--eecCCCCCC------
Q 010534 164 DEIQMLGCKTRGFSFTRALLGIC------ANELHLCG-DPAAVPLIQQILQVTGDD-VKVQSY--ERLSPLVPL------ 227 (508)
Q Consensus 164 DEah~~~~~~rg~~~~~~ll~l~------~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~v~~~--~~~~~~~~~------ 227 (508)
||||++.+..++..+..++..+. ....++++ +++..+.+..+....... ..+... ....+....
T Consensus 233 DEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp ETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred eCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 99999986644444433332221 11233333 333334445555443322 221111 000000000
Q ss_pred ------CC----cccc----ccc-cCCCCEEEEe-eHHHHHHHHHHHHhc--CCCeEEEEcCCCCHHHHHHHHHHhcCCC
Q 010534 228 ------NV----PLGS----FSN-IQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQATRFNDAS 289 (508)
Q Consensus 228 ------~~----~l~~----l~~-~~~~~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~lhg~l~~~~R~~~~~~f~~~~ 289 (508)
.. .+.. +.. ...+.+|||+ |++.++.+++.|++. ....+..+||+|++++|..+++.|++
T Consensus 313 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~-- 390 (563)
T 3i5x_A 313 VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK-- 390 (563)
T ss_dssp EEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--
T ss_pred EECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--
Confidence 00 0011 111 2344566666 899999999999876 13389999999999999999999999
Q ss_pred CCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHHHHHhh
Q 010534 290 SEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKS 366 (508)
Q Consensus 290 g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~~~~~~ 366 (508)
|+.+|||||+++++|||+| +++||+++. |.+..+|+||+|||||.|.. |.|+.++.. +...++.+
T Consensus 391 g~~~vLvaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 391 DESGILVCTDVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGKE---GSSVLFICKDELPFVREL 457 (563)
T ss_dssp CSSEEEEECGGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTCC---EEEEEEEEGGGHHHHHHH
T ss_pred CCCCEEEEcchhhcCCCcccCCEEEEECC---------CCchhhhhhhcCccccCCCC---ceEEEEEchhHHHHHHHH
Confidence 9999999999999999998 999999998 66999999999999999977 888776644 33455444
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-36 Score=338.27 Aligned_cols=320 Identities=19% Similarity=0.254 Sum_probs=235.5
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHhCCCceeee
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (508)
++|. |+++|. +++.+. +++++++++|||||||+++..++ ..+++++|++|+++|+.|+++++.+....++++
T Consensus 83 ~~f~-L~~~Q~eai~~l~--~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCID--RGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHH--HTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCC-CCHHHHHHHHHHH--cCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 4665 999999 999884 48999999999999999974433 356789999999999999999998754489999
Q ss_pred ccccccccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHH
Q 010534 132 TGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (508)
Q Consensus 132 ~g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~ 203 (508)
+|+.... .+..++|+|++++. .+.++++|||||||.+.+..||..|...+..++. ..++++.+++.+...
T Consensus 160 tGd~~~~-~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~-~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 160 TGDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD-KVRYVFLSATIPNAM 237 (1010)
T ss_dssp CSSCEEC-TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT-TCEEEEEECCCTTHH
T ss_pred eCCCccC-CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC-CCeEEEEcCCCCCHH
Confidence 9987654 46789999997763 3578999999999999988899998887766654 455666666666555
Q ss_pred HHHhHc----CCcEEE-EeeeecCCCCCC---------------------------------------------------
Q 010534 204 QILQVT----GDDVKV-QSYERLSPLVPL--------------------------------------------------- 227 (508)
Q Consensus 204 ~l~~~~----~~~~~v-~~~~~~~~~~~~--------------------------------------------------- 227 (508)
.+..+. +....+ ....+..++...
T Consensus 238 e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 317 (1010)
T 2xgj_A 238 EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQT 317 (1010)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------
T ss_pred HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccc
Confidence 555443 222222 111111111000
Q ss_pred ----------CCcc----ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCC-----------------------------
Q 010534 228 ----------NVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK----------------------------- 263 (508)
Q Consensus 228 ----------~~~l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~----------------------------- 263 (508)
...+ ..+.....+.+|||+ |++.|+.+++.|...+.
T Consensus 318 ~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 397 (1010)
T 2xgj_A 318 YKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQ 397 (1010)
T ss_dssp -----------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHH
T ss_pred cccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 0000 011111233566655 89999999988865321
Q ss_pred ---------CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEcccccccCcccccCChhhHH
Q 010534 264 ---------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334 (508)
Q Consensus 264 ---------~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~ 334 (508)
.++.++||+|++.+|..+++.|++ |.++|||||+++++|||+|...||+.+..+||+...+|++..+|.
T Consensus 398 ~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~--G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~ 475 (1010)
T 2xgj_A 398 IKHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 475 (1010)
T ss_dssp HHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHT--TCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHH
T ss_pred HHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhc--CCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHh
Confidence 138999999999999999999999 999999999999999999966667777888998888899999999
Q ss_pred hhhccCCCCCCCCCcEEEEEecCCC--HHHHHhhhcCCCchhhhcCCCCcHHH
Q 010534 335 QIAGRAGRYGSKFPVGEVTCLDSED--LPLLHKSLLEPSPMLESAGLFPNFDL 385 (508)
Q Consensus 335 Qr~GRagR~g~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~~~~~~ 385 (508)
||+|||||.|.+ ..|.|+.++.+. ...+.+++......+. ..+......
T Consensus 476 Qr~GRAGR~G~d-~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~-s~f~~~~~~ 526 (1010)
T 2xgj_A 476 QMSGRAGRRGLD-DRGIVIMMIDEKMEPQVAKGMVKGQADRLD-SAFHLGYNM 526 (1010)
T ss_dssp HHHTTBCCTTTC-SSEEEEEEECSCCCHHHHHHHHSCCCCCCC-CCCCCCHHH
T ss_pred HhhhhcccCCCC-CceEEEEEECCCCCHHHHHHHHhCCCcccc-cccCCcHHH
Confidence 999999999973 459998887654 3577777776665443 334433333
No 23
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.1e-36 Score=340.47 Aligned_cols=310 Identities=22% Similarity=0.313 Sum_probs=231.5
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHhC--CCcee
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKA--NVSCD 129 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~~--g~~~~ 129 (508)
++|. ++++|. +++.+ .+++++++++|||||||+++...+ ..+++++|++|+++|+.|+++++++. ++.++
T Consensus 36 ~~f~-l~~~Q~~aI~~i--l~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHL--EQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CSSC-CCHHHHHHHHHH--HTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred CCCC-CCHHHHHHHHHH--HcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 3554 899999 99988 558999999999999998854333 34567999999999999999999975 77899
Q ss_pred eeccccccccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchH
Q 010534 130 LITGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL 201 (508)
Q Consensus 130 ~~~g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~ 201 (508)
.++|+.... ....++++|++++. .+.++++|||||||.+.+..+|..|...+..++.. +++++.+++.+.
T Consensus 113 ~l~G~~~~~-~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~-v~iIlLSAT~~n 190 (997)
T 4a4z_A 113 LITGDVQIN-PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH-VKFILLSATVPN 190 (997)
T ss_dssp EECSSCEEC-TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT-CEEEEEECCCTT
T ss_pred EEeCCCccC-CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC-CCEEEEcCCCCC
Confidence 999986543 46789999997652 35789999999999999888999999888777644 455555555554
Q ss_pred HHHHHhHcC----CcEE-EEeeeecCCCCC--------------------------------------------------
Q 010534 202 IQQILQVTG----DDVK-VQSYERLSPLVP-------------------------------------------------- 226 (508)
Q Consensus 202 ~~~l~~~~~----~~~~-v~~~~~~~~~~~-------------------------------------------------- 226 (508)
...+..+.+ ..+. +....+..|+..
T Consensus 191 ~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (997)
T 4a4z_A 191 TYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 270 (997)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------
T ss_pred hHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccc
Confidence 445554432 1111 111111111100
Q ss_pred -------------------------------------------------CCC----ccccccccCCCCEEEEe-eHHHHH
Q 010534 227 -------------------------------------------------LNV----PLGSFSNIQTGDCIVTF-SRHAIY 252 (508)
Q Consensus 227 -------------------------------------------------~~~----~l~~l~~~~~~~~iv~~-s~~~~~ 252 (508)
... .+..+.....+.+|||+ |++.|+
T Consensus 271 ~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e 350 (997)
T 4a4z_A 271 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCE 350 (997)
T ss_dssp ----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHH
Confidence 000 00111122334566666 899999
Q ss_pred HHHHHHHhcCC--------------------------------------CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeE
Q 010534 253 RLKKAIESRGK--------------------------------------HLCSIVYGSLPPETRTRQATRFNDASSEFDV 294 (508)
Q Consensus 253 ~l~~~L~~~~~--------------------------------------~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~i 294 (508)
.+++.|.+.+. .++.++||+|++.+|..+++.|++ |..+|
T Consensus 351 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~--G~~kV 428 (997)
T 4a4z_A 351 EYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK--GFIKV 428 (997)
T ss_dssp HHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCCSE
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC--CCCcE
Confidence 99998865332 158999999999999999999999 99999
Q ss_pred EEecccccccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC---CHHHHHhhhcCCC
Q 010534 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE---DLPLLHKSLLEPS 371 (508)
Q Consensus 295 lVaT~~~~~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~---~~~~~~~~~~~~~ 371 (508)
||||+++++|||+|-..||+.+.++|||....|+|..+|+||+|||||.|.+ ..|.|+.+..+ +...+++++....
T Consensus 429 LvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~~~~~~~~~~~~~~i~~~~ 507 (997)
T 4a4z_A 429 LFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD-STGTVIVMAYNSPLSIATFKEVTMGVP 507 (997)
T ss_dssp EEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC-SSEEEEEECCSSCCCHHHHHHHHHSCC
T ss_pred EEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC-cceEEEEecCCCcchHHHHHHHhcCCC
Confidence 9999999999999989999999999999999999999999999999999954 55999888743 3356667766555
Q ss_pred chh
Q 010534 372 PML 374 (508)
Q Consensus 372 ~~i 374 (508)
..+
T Consensus 508 ~~l 510 (997)
T 4a4z_A 508 TRL 510 (997)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=321.43 Aligned_cols=305 Identities=14% Similarity=0.151 Sum_probs=118.4
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHcC-------CCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~-------~~~i~l~P~r 111 (508)
.+++.+.+.+... +|..|+++|. ++|.+....+++++++||||||||++++.++... ++++|++|++
T Consensus 98 ~l~~~l~~~l~~~-----g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 98 RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 4789999999998 9999999999 9999965445999999999999999987776532 2789999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc---cCCCcEEEEcceecc---------ccCCccEEEEccccccCCCCc
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~r 174 (508)
+|+.|++++++++ +..+....|+.... .....++|+|++.+. .+.++++|||||||++.+..
T Consensus 173 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~- 251 (479)
T 3fmp_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ- 251 (479)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTST-
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcC-
Confidence 9999998888753 45566666654322 225679999996651 23789999999999987532
Q ss_pred ChH-HHHHHhcccCCceEEE-ccCCcchHHHHHHhH-cCCcEEEEeeeecCCC-------------CCCCCcc-cccccc
Q 010534 175 GFS-FTRALLGICANELHLC-GDPAAVPLIQQILQV-TGDDVKVQSYERLSPL-------------VPLNVPL-GSFSNI 237 (508)
Q Consensus 175 g~~-~~~~ll~l~~~~~~~~-~~~~~~~~~~~l~~~-~~~~~~v~~~~~~~~~-------------~~~~~~l-~~l~~~ 237 (508)
++. ....+........+++ .+++.......+... .+....+......... ......+ ..+...
T Consensus 252 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (479)
T 3fmp_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331 (479)
T ss_dssp THHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------
T ss_pred CcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhc
Confidence 333 3334444433344444 344333444444433 3332222111100000 0011111 112222
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEc
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~ 315 (508)
..+.++||+ +++.++.+++.|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~-~v~~lh~~~~~~~R~~~~~~f~~--g~~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCc-cEEEecCCCCHHHHHHHHHHHHc--CCCcEEEEccccccCCccccCCEEEEe
Confidence 345566666 89999999999988876 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 316 ~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+.+..... +.+..+|+||+|||||.|.. |.++.++..+
T Consensus 409 d~p~~~~~---~~s~~~~~Qr~GRagR~g~~---G~~i~~~~~~ 446 (479)
T 3fmp_B 409 DLPVDKDG---NPDNETYLHRIGRTGRFGKR---GLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------
T ss_pred cCCCCCcc---CCCHHHHHHHhcccccCCCC---ceEEEEEcCc
Confidence 98531110 14778999999999999987 8888777543
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-37 Score=346.19 Aligned_cols=320 Identities=19% Similarity=0.217 Sum_probs=230.4
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
....|+++|. +++.+ .++++++++||||||||+++..++ ..+++++|++|+++|+.|+++++.+....+++++
T Consensus 181 ~~f~ltp~Q~~AI~~i--~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgllt 258 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCI--DRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 258 (1108)
T ss_dssp CSSCCCHHHHHHHHHH--TTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEEC
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEe
Confidence 4557999999 99988 668999999999999999975544 3467899999999999999999997655899999
Q ss_pred cccccccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHH
Q 010534 133 GQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204 (508)
Q Consensus 133 g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~ 204 (508)
|+.... .+..++|+|++++. .+.++++|||||||.+.+..+|..|..++..+.. .+++++.+++.+....
T Consensus 259 Gd~~~~-~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~-~~qvl~lSATipn~~e 336 (1108)
T 3l9o_A 259 GDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD-KVRYVFLSATIPNAME 336 (1108)
T ss_dssp SSCBCC-CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCT-TSEEEEEECSCSSCHH
T ss_pred CccccC-CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCC-CceEEEEcCCCCCHHH
Confidence 987643 46889999997653 2578999999999999987778778777766654 4555555555543333
Q ss_pred HHhH----cCCcEEE-EeeeecCCCCCC----------------------------------------------------
Q 010534 205 ILQV----TGDDVKV-QSYERLSPLVPL---------------------------------------------------- 227 (508)
Q Consensus 205 l~~~----~~~~~~v-~~~~~~~~~~~~---------------------------------------------------- 227 (508)
+..+ .+....+ ....+..++...
T Consensus 337 ~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 416 (1108)
T 3l9o_A 337 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTY 416 (1108)
T ss_dssp HHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------------------
T ss_pred HHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccccc
Confidence 3332 2222222 111111111100
Q ss_pred ---------CC----ccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCC------------------------------
Q 010534 228 ---------NV----PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK------------------------------ 263 (508)
Q Consensus 228 ---------~~----~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~------------------------------ 263 (508)
.. .+..+.....+.+|||+ +++.|+.++..|...+.
T Consensus 417 ~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~ 496 (1108)
T 3l9o_A 417 KGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQI 496 (1108)
T ss_dssp --------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHH
T ss_pred ccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 00 00111112334566665 89999999998854211
Q ss_pred --------CeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHH
Q 010534 264 --------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVK 334 (508)
Q Consensus 264 --------~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~ 334 (508)
.+|.++||+|++.+|..+++.|++ |.++|||||+++++|||+| +++||+++ .+|++...+|+|..+|+
T Consensus 497 ~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~~-~~~d~~~~r~iS~~eyi 573 (1108)
T 3l9o_A 497 KHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSV-RKWDGQQFRWVSGGEYI 573 (1108)
T ss_dssp HHHTHHHHHTEEEECSCSCHHHHHHHHHHHHH--TCCCEEEEESCCCSCCCC--CEEEESCS-EEESSSCEEECCHHHHH
T ss_pred HHHHHhhhcCeeeecCCCCHHHHHHHHHHHhC--CCCeEEEECcHHhcCCCCCCceEEEecC-cccCccccccCCHHHHH
Confidence 028999999999999999999999 9999999999999999998 77776654 47888888899999999
Q ss_pred hhhccCCCCCCCCCcEEEEEecCCC--HHHHHhhhcCCCchhhhcCCCCcHHHH
Q 010534 335 QIAGRAGRYGSKFPVGEVTCLDSED--LPLLHKSLLEPSPMLESAGLFPNFDLI 386 (508)
Q Consensus 335 Qr~GRagR~g~~~~~G~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~~~~~~l 386 (508)
||+|||||.|.+ +.|.|+.++.+. ...+.+++.....++. ..+......+
T Consensus 574 Qr~GRAGR~G~d-~~G~~ill~~~~~~~~~~~~l~~~~~~~L~-S~f~~~y~~i 625 (1108)
T 3l9o_A 574 QMSGRAGRRGLD-DRGIVIMMIDEKMEPQVAKGMVKGQADRLD-SAFHLGYNMI 625 (1108)
T ss_dssp HHHHHSCCSSSC-SSEEEEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCHHHH
T ss_pred HhhcccCCCCCC-CceEEEEEecCCcCHHHHHHHhcCCCcccc-cccCCcHHHH
Confidence 999999999953 459999987664 3567777776655543 3333344433
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.9e-37 Score=314.45 Aligned_cols=297 Identities=14% Similarity=0.149 Sum_probs=119.2
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..|+++|. +++.+. +++++++.+|||||||++++.++. .+++++|++|++
T Consensus 27 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i~--~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 27 ELDENLLRGVFGY-----GFEEPSAIQQRAIMPII--EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHHH--HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 4899999999988 9999999999 999885 478999999999999999755543 245889999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc-----cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCc
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~r 174 (508)
+|+.|+++.+.++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||++.+..+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~ 179 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 179 (394)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCc
Confidence 9999999998753 67788888865422 125789999997642 246899999999999875533
Q ss_pred ChHHHHHHhcccCCceEEEccCCcc-hHHHHHH-hHcCCcEEEEeeeecCC----------C---CCCCCccc-cccccC
Q 010534 175 GFSFTRALLGICANELHLCGDPAAV-PLIQQIL-QVTGDDVKVQSYERLSP----------L---VPLNVPLG-SFSNIQ 238 (508)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~-~~~~~~~~v~~~~~~~~----------~---~~~~~~l~-~l~~~~ 238 (508)
...+...+..+.. ..++++.+++. +....+. ........+........ . ......+. .+....
T Consensus 180 ~~~~~~~~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (394)
T 1fuu_A 180 KEQIYQIFTLLPP-TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 258 (394)
T ss_dssp HHHHHHHHHHSCT-TCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------
T ss_pred HHHHHHHHHhCCC-CceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCC
Confidence 3334444433433 33334433333 3333333 33443333322110000 0 00111111 122234
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+.++||+ +++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCC-eEEEeeCCCCHHHHHHHHHHHHC--CCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 45566666 89999999999988766 89999999999999999999999 9999999999999999997 99999998
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
. |.+..+|.||+||+||.|.. |.|+.++.++
T Consensus 336 ~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 366 (394)
T 1fuu_A 336 L---------PANKENYIHRIGRGGRFGRK---GVAINFVTNE 366 (394)
T ss_dssp -------------------------------------------
T ss_pred C---------CCCHHHHHHHcCcccCCCCC---ceEEEEEchh
Confidence 8 66999999999999999977 8888777654
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=311.38 Aligned_cols=320 Identities=13% Similarity=0.143 Sum_probs=185.7
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchHH
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r~ 112 (508)
+++.+.+.+... ++..|+++|. +++.+....++++++.+|||||||++++.++.. .++++|++|+++
T Consensus 126 l~~~~~~~l~~~-----g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 126 XXXXXXXXXXXX-----XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHH
T ss_pred cccccccccccc-----cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHH
Confidence 455566666666 8899999999 999885433499999999999999997665542 237899999999
Q ss_pred HHHHHHHHHHhCC----Cceeeeccccc--cccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChH-
Q 010534 113 LAWEVAKRLNKAN----VSCDLITGQER--EEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFS- 177 (508)
Q Consensus 113 La~q~~~~l~~~g----~~~~~~~g~~~--~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~- 177 (508)
|+.|+++++++++ ..+....++.. ....+..++++|++.+. .+.++++||+||||++.+. +++.
T Consensus 201 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~-~~~~~ 279 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ-QGLGD 279 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CHH
T ss_pred HHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc-CCcHH
Confidence 9999999998753 33333333322 22236789999997643 3578999999999999862 2332
Q ss_pred HHHHHhcccCCceEEEccCCcc-hHHHHHHhHcCCcEEEEee-eecCCCCCC----------C---Ccc-ccccccCCCC
Q 010534 178 FTRALLGICANELHLCGDPAAV-PLIQQILQVTGDDVKVQSY-ERLSPLVPL----------N---VPL-GSFSNIQTGD 241 (508)
Q Consensus 178 ~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~v~~~-~~~~~~~~~----------~---~~l-~~l~~~~~~~ 241 (508)
....+........++++.+++. +....+............. ......... . ..+ ..+.....+.
T Consensus 280 ~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~ 359 (508)
T 3fho_A 280 QSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQ 359 (508)
T ss_dssp HHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCC
T ss_pred HHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCc
Confidence 2223333333344444444443 3344444443332221111 100000000 0 001 1122234566
Q ss_pred EEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEccccc
Q 010534 242 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (508)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~ 319 (508)
++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.+.
T Consensus 360 ~LVF~~s~~~a~~l~~~L~~~~~-~v~~~hg~~~~~~R~~il~~f~~--g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~ 436 (508)
T 3fho_A 360 SIIFCKKKDTAEEIARRMTADGH-TVACLTGNLEGAQRDAIMDSFRV--GTSKVLVTTNVIARGIDVSQVNLVVNYDMPL 436 (508)
T ss_dssp EEEBCSSTTTTTHHHHHHTTTTC-CCCEEC-----CTTGGGTHHHHS--SSCCCCEECC-----CCCTTCCEEEC----C
T ss_pred EEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEeCChhhcCCCccCCCEEEEECCCC
Confidence 77776 89999999999988766 89999999999999999999999 9999999999999999997 99999998853
Q ss_pred ccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC--C---HHHHHhhhcCCCchhh
Q 010534 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE--D---LPLLHKSLLEPSPMLE 375 (508)
Q Consensus 320 ~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~--~---~~~~~~~~~~~~~~i~ 375 (508)
+... ..+..+|+||+|||||.|.. |.|+.+..+ + +..+++++.....++.
T Consensus 437 ~~~~---~~s~~~~~Qr~GRagR~g~~---g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 437 DQAG---RPDPQTYLHRIGRTGRFGRV---GVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp C--------CTHHHHHTTSCCC--------CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred cccC---CCCHHHHHHHhhhcCCCCCC---cEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 2211 15899999999999999976 777666542 2 3566666666655544
No 28
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.8e-33 Score=291.08 Aligned_cols=284 Identities=15% Similarity=0.116 Sum_probs=184.8
Q ss_pred cCCCCCCccccchHHHhcCCceEEEEccCCCchHHHHHHHH-----HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeec
Q 010534 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRL-----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (508)
Q Consensus 58 ~~~~~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l-----~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (508)
|+..++++|+++|.+.. ++++++++||||||||++++..+ ..+++++|++|||+|+.|+++.+. |..+....
T Consensus 1 G~~q~~~iq~~i~~~l~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR--GLPIRYQT 77 (451)
T ss_dssp CCCCCSCCCCCCGGGGS-TTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEECC
T ss_pred CCCCCCCcHHHHHHHHh-cCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc--Cceeeeee
Confidence 56788999998888742 34455999999999999854333 245689999999999999999986 44444333
Q ss_pred cccc-cccCCCcEEEEcceecc-------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcchHHHH
Q 010534 133 GQER-EEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204 (508)
Q Consensus 133 g~~~-~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~ 204 (508)
+... ....+..+.++|++.+. .+.++++|||||||++ +......+............++++.+++.+. .
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~--~ 154 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPG--S 154 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT--C
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCc--c
Confidence 3221 22234567788876542 3689999999999987 2211111111111111223444444444321 1
Q ss_pred HHhHcCCcEEEEeeeecCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHH
Q 010534 205 ILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283 (508)
Q Consensus 205 l~~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~ 283 (508)
..........+....+..+..........+.+ ..+.++||+ |++.++.+++.|++.+. .+..+||++. .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~----~~~~~ 228 (451)
T 2jlq_A 155 TDPFPQSNSPIEDIEREIPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRKTF----DTEYP 228 (451)
T ss_dssp CCSSCCCSSCEEEEECCCCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECTTTH----HHHGG
T ss_pred chhhhcCCCceEecCccCCchhhHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCC-eEEECCHHHH----HHHHH
Confidence 11111111122222222221111111222222 355677777 89999999999998876 8999999764 46899
Q ss_pred HhcCCCCCeeEEEecccccccccccccEEEEccccc---c--cCcc------cccCChhhHHhhhccCCCCCC-CCCcEE
Q 010534 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK---F--DGVE------LRDLTVPEVKQIAGRAGRYGS-KFPVGE 351 (508)
Q Consensus 284 ~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~---~--d~~~------~~p~s~~~~~Qr~GRagR~g~-~~~~G~ 351 (508)
.|++ |+.+|||||+++++|+|+|.++||+++..+ | ++.. ..|.+.++|+||+|||||.|. . |.
T Consensus 229 ~f~~--g~~~vLVaT~v~~~GiDip~~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~---g~ 303 (451)
T 2jlq_A 229 KTKL--TDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE---DD 303 (451)
T ss_dssp GGGS--SCCSEEEECGGGGSSCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC---CE
T ss_pred hhcc--CCceEEEECCHHHhCcCCCCCEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC---cc
Confidence 9999 999999999999999999779999988332 2 2110 158899999999999999996 4 77
Q ss_pred EEEecCC
Q 010534 352 VTCLDSE 358 (508)
Q Consensus 352 ~~~~~~~ 358 (508)
|+.+..+
T Consensus 304 ~~~~~~~ 310 (451)
T 2jlq_A 304 QYVFSGD 310 (451)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 7777643
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-33 Score=289.28 Aligned_cols=284 Identities=17% Similarity=0.164 Sum_probs=194.6
Q ss_pred HHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHH
Q 010534 45 IRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAK 119 (508)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~ 119 (508)
+.+.+++. +++ .|+++|. +++.+ ++++++++++|||||||++++..+. .+++++|++|+++|+.|+++
T Consensus 10 ~~~~l~~~----~~~-~~~~~Q~~~i~~i--~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 10 FRSFFKKK----FGK-DLTGYQRLWAKRI--VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHH----HSS-CCCHHHHHHHHHH--TTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHh----cCC-CCCHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHH
Confidence 44444443 244 7999999 99988 5688999999999999998654432 46789999999999999999
Q ss_pred HHHh---CCCceeeeccccccc----------cCCCcEEEEcceecc------ccCCccEEEEccccccCCCC-------
Q 010534 120 RLNK---ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD------VVSDYDCAVIDEIQMLGCKT------- 173 (508)
Q Consensus 120 ~l~~---~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~------~l~~~~~iViDEah~~~~~~------- 173 (508)
++++ .|+++..++|+.... .....++++||+.+. .+.++++||+||||++.+..
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 83 RLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHH
Confidence 9998 478899999876441 123789999997762 24789999999999875321
Q ss_pred --cChHH--HHHHhcccC-----------CceEEEccCCc-ch------HHHHHHhHc-CCc----EEEEeeeecCCCCC
Q 010534 174 --RGFSF--TRALLGICA-----------NELHLCGDPAA-VP------LIQQILQVT-GDD----VKVQSYERLSPLVP 226 (508)
Q Consensus 174 --rg~~~--~~~ll~l~~-----------~~~~~~~~~~~-~~------~~~~l~~~~-~~~----~~v~~~~~~~~~~~ 226 (508)
.|+.- ...++.... ...++++.+++ .+ ....+.... ... -.+....... .
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~- 239 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS--R- 239 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESS--C-
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeecc--C-
Confidence 22221 222222211 33344444433 21 222222110 000 0011111000 0
Q ss_pred CCCcc-ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEE-EEcCCCCHHHHHHHHHHhcCCCCCeeEEEe----cc
Q 010534 227 LNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SD 299 (508)
Q Consensus 227 ~~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa----T~ 299 (508)
....+ ..+.+ .++.++||+ +++.++.+++.|++.+. .+. .+||. +| + ++.|++ |+.+|||| |+
T Consensus 240 ~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~h~~----~r-~-~~~f~~--g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 240 SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF----EK-N-FEDFKV--GKINILIGVQAYYG 309 (414)
T ss_dssp CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTC-CEEESSSCH----HH-H-HHHHHT--TSCSEEEEECCTTC
T ss_pred HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCC-ceehhhcCc----ch-H-HHHHhC--CCCeEEEEecCcCc
Confidence 11111 12222 345666666 89999999999999877 777 88985 33 3 999999 99999999 99
Q ss_pred ccccccccc--ccEEEEcccccccCccccc--CChhhHHhhhccCCCCCCCC-CcEEEEEecC
Q 010534 300 AIGMGLNLN--ISRIIFSTMKKFDGVELRD--LTVPEVKQIAGRAGRYGSKF-PVGEVTCLDS 357 (508)
Q Consensus 300 ~~~~Gidip--v~~VI~~~~~~~d~~~~~p--~s~~~~~Qr~GRagR~g~~~-~~G~~~~~~~ 357 (508)
++++|+|+| +++||+++. | .+..+|+||+|||||.|.+. ..|.++.+..
T Consensus 310 ~~~~GiDip~~v~~VI~~~~---------p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGT---------PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESC---------CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred hhhccCccccccCEEEEECC---------CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 999999996 799999999 5 69999999999999998421 1399988884
No 30
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.5e-32 Score=290.52 Aligned_cols=272 Identities=16% Similarity=0.122 Sum_probs=185.0
Q ss_pred CCCccccchHHHhcCCceEEEEccCCCchHHHHHHHHHcCC-CEEEEcchHHHHHHHHHHHHh-CCCceeeecccccccc
Q 010534 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS-SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREEV 139 (508)
Q Consensus 62 ~~~~q~~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~~~-~~i~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~ 139 (508)
+...|+.++.+. .++++++++||||||||++++.++.+.+ +++|++|||+||.|+++++.+ ++..++..+|+.. ..
T Consensus 218 ~~~~q~~i~~~L-~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-~~ 295 (666)
T 3o8b_A 218 VFTDNSSPPAVP-QSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-IT 295 (666)
T ss_dssp SCCCCCSCCCCC-SSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-EC
T ss_pred cHHHHHHHHHHH-HcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-cc
Confidence 334555444332 4689999999999999999988887765 899999999999999999874 5888888888755 34
Q ss_pred CCCcEEEEcceecc-----ccCCccEEEEccccccCCCCcChH--HHHHHhcccCC--ceEEEccCCcchHHHHHHhHcC
Q 010534 140 DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFS--FTRALLGICAN--ELHLCGDPAAVPLIQQILQVTG 210 (508)
Q Consensus 140 ~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~rg~~--~~~~ll~l~~~--~~~~~~~~~~~~~~~~l~~~~~ 210 (508)
.+..++++|++.+- .+.+++++||||||++.. ++. +..++-.+... ...+..+++....+ ....
T Consensus 296 ~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i----~~~~ 368 (666)
T 3o8b_A 296 TGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLVVLATATPPGSV----TVPH 368 (666)
T ss_dssp CCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEEEEEESSCTTCC----CCCC
T ss_pred CCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceEEEECCCCCccc----ccCC
Confidence 57889999997652 246799999999998753 222 22223223322 22333333322211 1111
Q ss_pred Cc-EEEEeeeecCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010534 211 DD-VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 288 (508)
Q Consensus 211 ~~-~~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~ 288 (508)
.. ..+.. ............ ..+.....++++||+ +++.++.+++.|++.+. .+..+||++++++ |.+
T Consensus 369 p~i~~v~~-~~~~~i~~~~~~-~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~-~v~~lHG~l~q~e-------r~~- 437 (666)
T 3o8b_A 369 PNIEEVAL-SNTGEIPFYGKA-IPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGI-NAVAYYRGLDVSV-------IPT- 437 (666)
T ss_dssp TTEEEEEC-BSCSSEEETTEE-ECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECTTSCGGG-------SCS-
T ss_pred cceEEEee-cccchhHHHHhh-hhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCC-cEEEecCCCCHHH-------HHh-
Confidence 11 11110 000011111111 113334566777777 89999999999998876 8999999999874 445
Q ss_pred CCCeeEEEecccccccccccccEEEEccccc-------ccCc-----ccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKK-------FDGV-----ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 289 ~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~-------~d~~-----~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
+..+||||||++++|||+|+++||+++..+ ||+. ...|.+.++|+||+||||| |.. |. +.++
T Consensus 438 -~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~---G~-i~lv 511 (666)
T 3o8b_A 438 -IGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR---GI-YRFV 511 (666)
T ss_dssp -SSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC---EE-EEES
T ss_pred -CCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC---CE-EEEE
Confidence 566999999999999999999999877443 3332 1258899999999999999 665 88 6666
Q ss_pred CCC
Q 010534 357 SED 359 (508)
Q Consensus 357 ~~~ 359 (508)
.++
T Consensus 512 t~~ 514 (666)
T 3o8b_A 512 TPG 514 (666)
T ss_dssp CCC
T ss_pred ecc
Confidence 543
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.1e-32 Score=291.89 Aligned_cols=280 Identities=15% Similarity=0.109 Sum_probs=185.1
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH-----HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecc
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL-----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l-----~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (508)
..++++|+ .+|.+ ++++++++++|||||||++++..+ ..+.+++|++|||+||.|+++.+.. ..++...+
T Consensus 170 ~~~lpiq~~~i~~l--~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~--~~v~~~~~ 245 (618)
T 2whx_A 170 RIGEPDYEVDEDIF--RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG--LPIRYQTP 245 (618)
T ss_dssp CCCCCCCCCCGGGG--STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEECCT
T ss_pred ccCCCccccCHHHH--hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC--CceeEecc
Confidence 66778887 78877 679999999999999999963332 2355899999999999999999874 33442222
Q ss_pred c-cccccCCCcEEEEcceecc-------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcch-HHHH
Q 010534 134 Q-EREEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP-LIQQ 204 (508)
Q Consensus 134 ~-~~~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~ 204 (508)
. ......+..+.++|...+. .+.++++|||||||++ +......+..++..+.....++++.+++.+ ....
T Consensus 246 ~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~ 324 (618)
T 2whx_A 246 AVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP 324 (618)
T ss_dssp TSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCS
T ss_pred cceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhh
Confidence 1 1112234445566655443 2689999999999998 321111222222222223344444444432 2222
Q ss_pred HHhHcCCcEEEEeeeecCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHH
Q 010534 205 ILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283 (508)
Q Consensus 205 l~~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~ 283 (508)
+.......+.+.. ..+.......+..+.+ ..++++||+ |++.++.+++.|++.+. .+..+||+ +|.++++
T Consensus 325 ~~~~~~~~~~v~~---~~~~~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~----~R~~~l~ 395 (618)
T 2whx_A 325 FPQSNSPIEDIER---EIPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRK----TFDTEYP 395 (618)
T ss_dssp SCCCSSCEEEEEC---CCCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTC-CEEEECTT----THHHHTT
T ss_pred hhccCCceeeecc---cCCHHHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCC-cEEEEChH----HHHHHHH
Confidence 2221111122221 1121112222233333 356777777 89999999999999876 89999984 6778999
Q ss_pred HhcCCCCCeeEEEecccccccccccccEEEEcccccc-----cCc------ccccCChhhHHhhhccCCCCCCCCCcEEE
Q 010534 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF-----DGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (508)
Q Consensus 284 ~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~~-----d~~------~~~p~s~~~~~Qr~GRagR~g~~~~~G~~ 352 (508)
.|++ |+.+||||||++++|+|+|+++||+++..+. +.. -..|.+.++|+||+|||||.|. ..|.+
T Consensus 396 ~F~~--g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~--~~G~a 471 (618)
T 2whx_A 396 KTKL--TDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA--QEDDQ 471 (618)
T ss_dssp HHHH--SCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT--CCCEE
T ss_pred hhcC--CCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC--CCCeE
Confidence 9999 9999999999999999999999988876321 111 1347899999999999999974 12778
Q ss_pred EEecC
Q 010534 353 TCLDS 357 (508)
Q Consensus 353 ~~~~~ 357 (508)
+.+..
T Consensus 472 i~l~~ 476 (618)
T 2whx_A 472 YVFSG 476 (618)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 87774
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.98 E-value=9.4e-33 Score=302.09 Aligned_cols=283 Identities=18% Similarity=0.154 Sum_probs=162.6
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cC-----CCEEEEcchHHHHHHHHHHHHhC--
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-----SSGIYCGPLRLLAWEVAKRLNKA-- 124 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~-----~~~i~l~P~r~La~q~~~~l~~~-- 124 (508)
+|+..|+++|. +++.+ +.++++++++|||||||++++..+. .. ++++|++|+++|+.|+.+.++++
T Consensus 9 ~g~~~lr~~Q~~~i~~~--l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPA--MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp TC--CCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 39999999999 99988 4589999999999999999765553 22 68899999999999999999864
Q ss_pred --CCceeeecccccccc------CCCcEEEEcceecc---------ccCCccEEEEccccccCCCCcChHHHHHH---h-
Q 010534 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---L- 183 (508)
Q Consensus 125 --g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~rg~~~~~~l---l- 183 (508)
|+.+..++|+..... .+..++++||+++. .+.++++|||||||++... . .+..++ +
T Consensus 87 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~--~-~~~~i~~~~l~ 163 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ--H-PYNMIMFNYLD 163 (696)
T ss_dssp TTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT--C-HHHHHHHHHHH
T ss_pred cCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc--c-cHHHHHHHHHH
Confidence 788999998764322 36789999997652 3577899999999999753 2 222222 1
Q ss_pred ----cccCCceEEEccCCcc---------hHHHHHHhHc---CC-------------------cEEE-Eeeeec-C----
Q 010534 184 ----GICANELHLCGDPAAV---------PLIQQILQVT---GD-------------------DVKV-QSYERL-S---- 222 (508)
Q Consensus 184 ----~l~~~~~~~~~~~~~~---------~~~~~l~~~~---~~-------------------~~~v-~~~~~~-~---- 222 (508)
.......++++.+++. .....+.... .. .... ..+... .
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1112233444433332 1122222111 00 0000 000000 0
Q ss_pred ------------------C----C--------------------------------------------------------
Q 010534 223 ------------------P----L-------------------------------------------------------- 224 (508)
Q Consensus 223 ------------------~----~-------------------------------------------------------- 224 (508)
. +
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 0 0
Q ss_pred ---------------------------C-------------------------CCCCcc----cccccc----CCCCEEE
Q 010534 225 ---------------------------V-------------------------PLNVPL----GSFSNI----QTGDCIV 244 (508)
Q Consensus 225 ---------------------------~-------------------------~~~~~l----~~l~~~----~~~~~iv 244 (508)
. .....+ ..+.+. ..+.+||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 0 000000 011111 3456677
Q ss_pred Ee-eHHHHHHHHHHHHhcCC---CeEEEE--------cCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccE
Q 010534 245 TF-SRHAIYRLKKAIESRGK---HLCSIV--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (508)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~~---~~v~~l--------hg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~ 311 (508)
|+ +++.++.+++.|+..+. .++..+ ||+|++++|.++++.|++ .|+.+|||||+++++|||+| +++
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~-~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh-cCCccEEEEechhhcCCcCccCCE
Confidence 76 89999999999998762 367777 569999999999999984 26889999999999999997 999
Q ss_pred EEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 312 VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
||++|. |.+..+|+||+|| ||.+. |.|+.+++++
T Consensus 483 VI~~d~---------p~s~~~~~Qr~GR-GR~~~----g~~~~l~~~~ 516 (696)
T 2ykg_A 483 VILYEY---------VGNVIKMIQTRGR-GRARG----SKCFLLTSNA 516 (696)
T ss_dssp EEEESC---------C--CCCC----------CC----CEEEEEESCH
T ss_pred EEEeCC---------CCCHHHHHHhhcc-CcCCC----ceEEEEecCC
Confidence 999999 6699999999999 99854 8888887765
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=5.5e-32 Score=288.13 Aligned_cols=282 Identities=16% Similarity=0.143 Sum_probs=151.0
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c-----CCCEEEEcchHHHHHHHHHHHHhC---
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA--- 124 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~-----~~~~i~l~P~r~La~q~~~~l~~~--- 124 (508)
+...|+++|. +++.+ ++++++++.+|||||||++++.++. . +++++|++|+++|+.|+++.+.++
T Consensus 4 ~~~~~~~~Q~~~i~~~--~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4568999999 99988 4588999999999999999755442 2 567899999999999999999865
Q ss_pred -CCceeeecccccccc------CCCcEEEEcceecc---------ccCCccEEEEccccccCCCCcChHHHHHHhccc--
Q 010534 125 -NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-- 186 (508)
Q Consensus 125 -g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~-- 186 (508)
++.+..++|+..... .+..++|+||+.+. .+.++++||+||||++.+. +. +...+....
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~--~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT--SH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc--ch-HHHHHHHHHHh
Confidence 899999999764332 25789999997653 4678999999999999854 43 222211110
Q ss_pred -----CCceEEEccCCcc------------hHHHHHHhHcCCcE--------------------EEEeeee-cCC-----
Q 010534 187 -----ANELHLCGDPAAV------------PLIQQILQVTGDDV--------------------KVQSYER-LSP----- 223 (508)
Q Consensus 187 -----~~~~~~~~~~~~~------------~~~~~l~~~~~~~~--------------------~v~~~~~-~~~----- 223 (508)
....++++.+++. ..+..+....+... ....+.. ...
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1223333333332 12222222222110 0000000 000
Q ss_pred ----------------------------CCC-------------------------------------------------
Q 010534 224 ----------------------------LVP------------------------------------------------- 226 (508)
Q Consensus 224 ----------------------------~~~------------------------------------------------- 226 (508)
...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000
Q ss_pred ---------------------------------------------------CCCc---c-ccccc----cCCCCEEEEe-
Q 010534 227 ---------------------------------------------------LNVP---L-GSFSN----IQTGDCIVTF- 246 (508)
Q Consensus 227 ---------------------------------------------------~~~~---l-~~l~~----~~~~~~iv~~- 246 (508)
.... + ..+.+ ...+.++||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0000 0 00111 2345666666
Q ss_pred eHHHHHHHHHHHHhcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE
Q 010534 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
+++.++.+++.|++.+ +.....+||+|++++|.++++.|++ +|+.+|||||+++++|+|+| +++||+
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLvaT~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVVL 477 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CCEEEEEC-----------CEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc-cCceEEEEEcCchhcCCCchhCCEEEE
Confidence 8999999999998751 2245667889999999999999986 36789999999999999997 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++. |.++..|+||+|| ||.+. |.|+.+..++
T Consensus 478 ~d~---------p~s~~~~~Qr~GR-gR~~~----g~~~~l~~~~ 508 (556)
T 4a2p_A 478 YEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 508 (556)
T ss_dssp ETC---------CSCHHHHHHC-------------CCEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCC-CCCCC----ceEEEEEeCc
Confidence 999 6799999999999 99954 7888887665
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=1.6e-31 Score=284.27 Aligned_cols=280 Identities=16% Similarity=0.125 Sum_probs=173.6
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c-----CCCEEEEcchHHHHHHHHHHHHhC----C
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA----N 125 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~-----~~~~i~l~P~r~La~q~~~~l~~~----g 125 (508)
-.|+++|. +++.+ ++++++++.+|||||||++++.++. . +++++|++|+++|+.|+++.+.++ +
T Consensus 3 ~~~~~~Q~~~i~~~--~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 3 LKPRNYQLELALPA--KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHH--hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 36899999 99988 4589999999999999999755442 2 568899999999999999999865 8
Q ss_pred CceeeeccccccccC------CCcEEEEcceecc---------ccCCccEEEEccccccCCCCcChHHHHHHhccc----
Q 010534 126 VSCDLITGQEREEVD------GAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC---- 186 (508)
Q Consensus 126 ~~~~~~~g~~~~~~~------~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~---- 186 (508)
+.+..++|+...... +..++++||+.+. .+.++++||+||||++.+. +. +...+....
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~--~~-~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN--HP-YNQIMFRYLDHKL 157 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT--CH-HHHHHHHHHHHHT
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc--ch-HHHHHHHHHHhhh
Confidence 999999998754432 5789999997652 4577999999999999854 32 332221111
Q ss_pred ----CCceEEEccCCcc------------hHHHHHHhHcCCc-EEE-------------------EeeeecCC-------
Q 010534 187 ----ANELHLCGDPAAV------------PLIQQILQVTGDD-VKV-------------------QSYERLSP------- 223 (508)
Q Consensus 187 ----~~~~~~~~~~~~~------------~~~~~l~~~~~~~-~~v-------------------~~~~~~~~------- 223 (508)
....++++.+++. ..+..+....+.. +.. ..+....+
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 1223343333332 2223333333321 110 00000000
Q ss_pred --------------------------CCC---------------------------------------------------
Q 010534 224 --------------------------LVP--------------------------------------------------- 226 (508)
Q Consensus 224 --------------------------~~~--------------------------------------------------- 226 (508)
...
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000
Q ss_pred ---------------------------------------------------CCCcc----ccccc----cCCCCEEEEe-
Q 010534 227 ---------------------------------------------------LNVPL----GSFSN----IQTGDCIVTF- 246 (508)
Q Consensus 227 ---------------------------------------------------~~~~l----~~l~~----~~~~~~iv~~- 246 (508)
....+ ..+.+ ...+.++||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 00000 00001 1336677776
Q ss_pred eHHHHHHHHHHHHhcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE
Q 010534 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
+++.++.+++.|+..+ +.....+||+|++++|.++++.|++ +|+.+|||||+++++|+|+| +++||+
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA-SGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc-CCCeeEEEEcchhhcCCccccCCEEEE
Confidence 8999999999998864 1245566779999999999999996 26789999999999999997 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++. |.++..|+||+|| ||.. . |.|+.+..++
T Consensus 477 ~d~---------p~s~~~~~Qr~GR-gR~~-~---g~~~~l~~~~ 507 (555)
T 3tbk_A 477 YEY---------VGNVIKMIQTRGR-GRAR-D---SKCFLLTSSA 507 (555)
T ss_dssp ESC---------CSSCCCEECSSCC-CTTT-S---CEEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCc-CcCC-C---ceEEEEEcCC
Confidence 998 6799999999999 9984 4 8888887765
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=293.40 Aligned_cols=281 Identities=17% Similarity=0.154 Sum_probs=183.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc------C----CCEEEEcchHHHHHHH-HHHHHhCC--
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------S----SSGIYCGPLRLLAWEV-AKRLNKAN-- 125 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~------~----~~~i~l~P~r~La~q~-~~~l~~~g-- 125 (508)
..|+++|. +++.+ ++++++++.+|||||||++++..+.. . ++++|++|+++|+.|+ .+++++++
T Consensus 6 ~~l~~~Q~~~i~~i--l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPA--LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHH--HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHH--HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 57899999 99988 45889999999999999998655532 2 7889999999999999 99998653
Q ss_pred -Cceeeecccccccc------CCCcEEEEcceecc--------------ccCCccEEEEccccccCCCCcChH-HHHHHh
Q 010534 126 -VSCDLITGQEREEV------DGAKHRAVTVEMAD--------------VVSDYDCAVIDEIQMLGCKTRGFS-FTRALL 183 (508)
Q Consensus 126 -~~~~~~~g~~~~~~------~~~~~iv~T~e~~~--------------~l~~~~~iViDEah~~~~~~rg~~-~~~~ll 183 (508)
+.+..++|+..... .+..++|+|++.+. .+.++++|||||||++........ ....+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 78899998765432 36789999997653 247899999999999854221111 111111
Q ss_pred cc----c--------CCceEEEccCCcch------------HHHHHHhHcCC-------------------cE-EEEeee
Q 010534 184 GI----C--------ANELHLCGDPAAVP------------LIQQILQVTGD-------------------DV-KVQSYE 219 (508)
Q Consensus 184 ~l----~--------~~~~~~~~~~~~~~------------~~~~l~~~~~~-------------------~~-~v~~~~ 219 (508)
.. . ....++++.+++.. .+..+...... .. .+..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 10 0 01222333222211 11222221111 00 111000
Q ss_pred ec----------------------CCCC----------------------------------------------------
Q 010534 220 RL----------------------SPLV---------------------------------------------------- 225 (508)
Q Consensus 220 ~~----------------------~~~~---------------------------------------------------- 225 (508)
.. .+..
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000
Q ss_pred ---------------------------------------------------------CCCCcc-ccccc----cC-CCCE
Q 010534 226 ---------------------------------------------------------PLNVPL-GSFSN----IQ-TGDC 242 (508)
Q Consensus 226 ---------------------------------------------------------~~~~~l-~~l~~----~~-~~~~ 242 (508)
.+...+ ..+.+ .. .+..
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 000011 11111 12 5667
Q ss_pred EEEe-eHHHHHHHHHHHHhc------CCCeEEEEcCC--------CCHHHHHHHHHHhcCCCCCeeEEEecccccccccc
Q 010534 243 IVTF-SRHAIYRLKKAIESR------GKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (508)
Q Consensus 243 iv~~-s~~~~~~l~~~L~~~------~~~~v~~lhg~--------l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidi 307 (508)
|||+ +++.++.+++.|++. +. ++..+||+ |++++|.++++.|++ |+.+|||||+++++|||+
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~-~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~--g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGV-KAHHLIGAGHSSEFKPMTQNEQKEVISKFRT--GKINLLIATTVAEEGLDI 480 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECSCCTTSCC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCc-ceEEEECCCCccCCCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCcc
Confidence 7776 899999999999876 44 78999999 999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 308 p-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
| +++||+++. |.|..+|+||+|||||.|. .+++....+
T Consensus 481 p~v~~VI~~d~---------p~s~~~~~Qr~GRArr~g~----~~~l~~~~~ 519 (699)
T 4gl2_A 481 KECNIVIRYGL---------VTNEIAMVQARGRARADES----TYVLVAHSG 519 (699)
T ss_dssp CSCCCCEEESC---------CCCHHHHHHHHTTSCSSSC----EEEEEEESS
T ss_pred ccCCEEEEeCC---------CCCHHHHHHHcCCCCCCCc----eEEEEEeCC
Confidence 7 999999999 6799999999999888763 444444433
No 36
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=7.5e-32 Score=279.45 Aligned_cols=265 Identities=17% Similarity=0.193 Sum_probs=168.1
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc-ccCCCcEEEEc
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAVT 148 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~-~~~~~~~iv~T 148 (508)
.++++++++||||||||++++.+++ .+++++|++|||+|+.|+++++. |..+....+.... ...+..+.++|
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~~~t~~~~i~~~~ 96 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR--GLPVRYQTSAVQREHQGNEIVDVMC 96 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT--TSCEEECC--------CCCSEEEEE
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc--CceEeEEecccccCCCCCcEEEEEc
Confidence 4689999999999999999754443 45689999999999999999997 4444443333221 12234455666
Q ss_pred ceec-------cccCCccEEEEccccccCCC---CcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHcCCcEEEEee
Q 010534 149 VEMA-------DVVSDYDCAVIDEIQMLGCK---TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218 (508)
Q Consensus 149 ~e~~-------~~l~~~~~iViDEah~~~~~---~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~ 218 (508)
...+ ..+.++++|||||||++... .+|+.... .. ....++++.+++.+.. +........++...
T Consensus 97 ~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~--~~--~~~~~~il~SAT~~~~--~~~~~~~~~pi~~~ 170 (459)
T 2z83_A 97 HATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATK--VE--LGEAAAIFMTATPPGT--TDPFPDSNAPIHDL 170 (459)
T ss_dssp HHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH--HH--TTSCEEEEECSSCTTC--CCSSCCCSSCEEEE
T ss_pred hHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHH--hc--cCCccEEEEEcCCCcc--hhhhccCCCCeEEe
Confidence 5443 23689999999999986310 11222111 11 1234444444443211 11111111122222
Q ss_pred eecCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEe
Q 010534 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (508)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa 297 (508)
....+.......+..+.+ ..+.++||+ |++.++.+++.|++.+. .+..+||+ +|..+++.|++ |+.+||||
T Consensus 171 ~~~~~~~~~~~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~-~v~~lh~~----~R~~~~~~f~~--g~~~iLVa 242 (459)
T 2z83_A 171 QDEIPDRAWSSGYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK-KVIQLNRK----SYDTEYPKCKN--GDWDFVIT 242 (459)
T ss_dssp ECCCCSSCCSSCCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC-CEEEESTT----CCCCCGGGSSS--CCCSEEEE
T ss_pred cccCCcchhHHHHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC-cEEecCHH----HHHHHHhhccC--CCceEEEE
Confidence 222222222222222333 356777777 89999999999999876 89999995 67788999999 99999999
Q ss_pred cccccccccccccEEEEccccc-----ccCcc------cccCChhhHHhhhccCCCCCC-CCCcEEEEEecCC
Q 010534 298 SDAIGMGLNLNISRIIFSTMKK-----FDGVE------LRDLTVPEVKQIAGRAGRYGS-KFPVGEVTCLDSE 358 (508)
Q Consensus 298 T~~~~~Gidipv~~VI~~~~~~-----~d~~~------~~p~s~~~~~Qr~GRagR~g~-~~~~G~~~~~~~~ 358 (508)
|+++++|+|+|.++||+++..+ |++.. ..|.|.++|+||+|||||.|. . |.++.+...
T Consensus 243 T~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~---G~~~~~~~~ 312 (459)
T 2z83_A 243 TDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV---GDEYHYGGA 312 (459)
T ss_dssp SSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC---CEEEEECSC
T ss_pred CChHHhCeecCCCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC---CeEEEEEcc
Confidence 9999999999779999966322 22211 148899999999999999986 4 777777654
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.6e-31 Score=275.45 Aligned_cols=281 Identities=20% Similarity=0.163 Sum_probs=192.9
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHHHHhC-CC---cee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKA-NV---SCD 129 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~l~~~-g~---~~~ 129 (508)
..|+++|. +++.+.. + ++++.+|||+|||++++..+. .+++++|++|+++|+.|+++++.++ +. .+.
T Consensus 8 ~~l~~~Q~~~i~~~~~--~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE--T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HCCCHHHHHHHHHGGG--S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CCccHHHHHHHHHHhh--C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheE
Confidence 46889999 8887743 5 999999999999999865543 3678999999999999999999865 65 788
Q ss_pred eeccccccc-----cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccC
Q 010534 130 LITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196 (508)
Q Consensus 130 ~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~ 196 (508)
.++|+.... ..+..++++|++.+. .+.++++||+||||++.+..........+.........+..++
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 888875432 225789999997653 2478999999999999753111112222222222222222222
Q ss_pred Ccc---hHHHHHHhHcCCcEEEE--------------------eeeec---------------------------CCC--
Q 010534 197 AAV---PLIQQILQVTGDDVKVQ--------------------SYERL---------------------------SPL-- 224 (508)
Q Consensus 197 ~~~---~~~~~l~~~~~~~~~v~--------------------~~~~~---------------------------~~~-- 224 (508)
++. ..+..+....+...... ..... .+.
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 222 23334444333211100 00000 000
Q ss_pred --C-----------------------------------------------------------------------------
Q 010534 225 --V----------------------------------------------------------------------------- 225 (508)
Q Consensus 225 --~----------------------------------------------------------------------------- 225 (508)
.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence 0
Q ss_pred ---------------CCC---Ccc-ccccc----cCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcC--------CC
Q 010534 226 ---------------PLN---VPL-GSFSN----IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYG--------SL 273 (508)
Q Consensus 226 ---------------~~~---~~l-~~l~~----~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg--------~l 273 (508)
... ..+ ..+.+ ...+.++||+ +++.++.+++.|++.+. .+..+|| ++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-KAKRFVGQASKENDRGL 403 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-CEEEECCSSCC------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-CcEEEeccccccccccC
Confidence 000 000 11111 2355667666 79999999999999866 8999999 99
Q ss_pred CHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEE
Q 010534 274 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (508)
Q Consensus 274 ~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~ 352 (508)
+.++|.++++.|++ |+.+|||||+++++|+|+| +++||+++. |.++..|.||+|||||.|+ |.+
T Consensus 404 ~~~~r~~~~~~F~~--~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~---------~~~~~~~~Qr~GR~~R~g~----g~~ 468 (494)
T 1wp9_A 404 SQREQKLILDEFAR--GEFNVLVATSVGEEGLDVPEVDLVVFYEP---------VPSAIRSIQRRGRTGRHMP----GRV 468 (494)
T ss_dssp -CCHHHHHHHHHHH--TSCSEEEECGGGGGGGGSTTCCEEEESSC---------CHHHHHHHHHHTTSCSCCC----SEE
T ss_pred CHHHHHHHHHHHhc--CCceEEEECCccccCCCchhCCEEEEeCC---------CCCHHHHHHHHhhccCCCC----ceE
Confidence 99999999999999 8899999999999999997 999999998 6699999999999999997 777
Q ss_pred EEecCCC
Q 010534 353 TCLDSED 359 (508)
Q Consensus 353 ~~~~~~~ 359 (508)
+.+...+
T Consensus 469 ~~l~~~~ 475 (494)
T 1wp9_A 469 IILMAKG 475 (494)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 7776544
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=1.3e-31 Score=287.46 Aligned_cols=277 Identities=17% Similarity=0.146 Sum_probs=177.5
Q ss_pred CCCCccc------cchHHH----hcCCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHHHHhCC
Q 010534 61 DLTRPHT------WYPLAR----KKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKAN 125 (508)
Q Consensus 61 ~~~~~q~------~~~~~~----~~~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~l~~~g 125 (508)
.++++|+ ++|.+. ..++++++++||||||||++++.+++ .+.+++|++|||+||.|+++.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7788887 555542 12799999999999999999744433 34689999999999999999998765
Q ss_pred Cceeeeccccc-cccCCCcEEEEcceecc-------ccCCccEEEEccccccCCCCcChHH-HHHHhcc-cCCceEEEcc
Q 010534 126 VSCDLITGQER-EEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSF-TRALLGI-CANELHLCGD 195 (508)
Q Consensus 126 ~~~~~~~g~~~-~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~~~~~rg~~~-~~~ll~l-~~~~~~~~~~ 195 (508)
+. ...+... ....+.-+-.++...+. .+.+++++||||||++.. +... ...+... .....+++..
T Consensus 295 i~--~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~---~~~~~~~~l~~~~~~~~~~vl~~ 369 (673)
T 2wv9_A 295 VR--YLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDP---ASIAARGYIATRVEAGEAAAIFM 369 (673)
T ss_dssp CE--ECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCH---HHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ee--eecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCc---cHHHHHHHHHHhccccCCcEEEE
Confidence 43 2222211 11112222233322221 368899999999999821 1111 1111111 1133444444
Q ss_pred CCcc-hHHHHHHhHcCCcEEEEeeeecCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCC
Q 010534 196 PAAV-PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSL 273 (508)
Q Consensus 196 ~~~~-~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l 273 (508)
+++. +.+..+ .....++.......+.......+..+.+ ..+.++||+ +++.++.+++.|++.+. ++..+||+
T Consensus 370 SAT~~~~i~~~---~~~~~~i~~v~~~~~~~~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~-~v~~lHg~- 443 (673)
T 2wv9_A 370 TATPPGTSDPF---PDTNSPVHDVSSEIPDRAWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGK-RVIQLNRK- 443 (673)
T ss_dssp CSSCTTCCCSS---CCCSSCEEEEECCCCSSCCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECSS-
T ss_pred cCCCChhhhhh---cccCCceEEEeeecCHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCC-eEEEeChH-
Confidence 4333 222111 1111222222211222222223333333 456677777 89999999999998866 89999993
Q ss_pred CHHHHHHHHHHhcCCCCCeeEEEecccccccccccccEEEEccccc-----ccCc------ccccCChhhHHhhhccCCC
Q 010534 274 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGV------ELRDLTVPEVKQIAGRAGR 342 (508)
Q Consensus 274 ~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv~~VI~~~~~~-----~d~~------~~~p~s~~~~~Qr~GRagR 342 (508)
+|.++++.|++ |+.+|||||+++++|||+|+++||+++... ||.. -..|.+.++|+||+|||||
T Consensus 444 ---eR~~v~~~F~~--g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR 518 (673)
T 2wv9_A 444 ---SYDTEYPKCKN--GDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGR 518 (673)
T ss_dssp ---SHHHHGGGGGT--CCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSC
T ss_pred ---HHHHHHHHHHC--CCceEEEECchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCC
Confidence 78899999999 999999999999999999999999976422 2322 1247899999999999999
Q ss_pred C-CCCCCcEEEEEec
Q 010534 343 Y-GSKFPVGEVTCLD 356 (508)
Q Consensus 343 ~-g~~~~~G~~~~~~ 356 (508)
. |.. |.|+.++
T Consensus 519 ~~g~~---G~ai~l~ 530 (673)
T 2wv9_A 519 NPSQI---GDEYHYG 530 (673)
T ss_dssp CSSCC---CEEEEEC
T ss_pred CCCCC---CEEEEEE
Confidence 9 555 8888874
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=2e-31 Score=274.61 Aligned_cols=263 Identities=17% Similarity=0.148 Sum_probs=159.1
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc-ccCCCcEEEEc
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAVT 148 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~-~~~~~~~iv~T 148 (508)
+++++++++||||||||++++.++. .+.+++|++||++||.|+++.+..+++. ...+.... ...+.-+-.++
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~~~~v~Tp~~l~~~l~ 83 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQAFSAHGSGREVIDAMC 83 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSCCCCCCCSSCCEEEEE
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--EecccceeccCCccceeeec
Confidence 5689999999999999999754443 3458999999999999999999865433 22222110 00111111111
Q ss_pred ceecc-------ccCCccEEEEccccccCCCCcChHHH-HHHhc-ccCCceEEEccCCcc-hHHHHHHhHcCCcEEEEee
Q 010534 149 VEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFT-RALLG-ICANELHLCGDPAAV-PLIQQILQVTGDDVKVQSY 218 (508)
Q Consensus 149 ~e~~~-------~l~~~~~iViDEah~~~~~~rg~~~~-~~ll~-l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~v~~~ 218 (508)
...+. .+.+++++||||+|++ +. ++... ..+.. ......+++..+++. +....+....+. . ...
T Consensus 84 ~~~l~~~~~~~~~~~~l~~vViDEah~~-~~--~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~-~--~~~ 157 (440)
T 1yks_A 84 HATLTYRMLEPTRVVNWEVIIMDEAHFL-DP--ASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNGE-I--EDV 157 (440)
T ss_dssp HHHHHHHHTSSSCCCCCSEEEETTTTCC-SH--HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSC-E--EEE
T ss_pred ccchhHhhhCcccccCccEEEEECcccc-Cc--chHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCCC-e--eEe
Confidence 11111 2588999999999998 22 22111 11111 112234444433332 222222221111 1 111
Q ss_pred eecCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEe
Q 010534 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (508)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa 297 (508)
....+.......+..+.+ ..+.++||+ +++.++.+++.|++.+. ++..+|| ++|.++++.|++ |+.+||||
T Consensus 158 ~~~~~~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~-~v~~lhg----~~R~~~~~~F~~--g~~~vLVa 229 (440)
T 1yks_A 158 QTDIPSEPWNTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGK-SVVVLNR----KTFEREYPTIKQ--KKPDFILA 229 (440)
T ss_dssp ECCCCSSCCSSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC-CEEECCS----SSCC----------CCCSEEEE
T ss_pred eeccChHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCC-CEEEecc----hhHHHHHhhhcC--CCceEEEE
Confidence 111222222222333333 355667766 89999999999998865 8999999 467789999999 99999999
Q ss_pred cccccccccccccEEEEccccc-----ccCc-----ccccCChhhHHhhhccCCCC-CCCCCcEEEEEec
Q 010534 298 SDAIGMGLNLNISRIIFSTMKK-----FDGV-----ELRDLTVPEVKQIAGRAGRY-GSKFPVGEVTCLD 356 (508)
Q Consensus 298 T~~~~~Gidipv~~VI~~~~~~-----~d~~-----~~~p~s~~~~~Qr~GRagR~-g~~~~~G~~~~~~ 356 (508)
|+++++|+|+|+++||+++..+ ++.. ...|.+.++|.||+|||||. |.. |.|+.++
T Consensus 230 T~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~---g~~~~l~ 296 (440)
T 1yks_A 230 TDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD---GDSYYYS 296 (440)
T ss_dssp SSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC---CEEEEEC
T ss_pred CChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC---ceEEEEe
Confidence 9999999999999999865533 1111 12378999999999999998 455 8888885
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.6e-31 Score=290.12 Aligned_cols=290 Identities=18% Similarity=0.259 Sum_probs=194.5
Q ss_pred HHHHhhcccCCCccccCCCCCCccc-cchHHHhc----CCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHH
Q 010534 43 VIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLL 113 (508)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~----~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~L 113 (508)
..+.+.+... +| .|++.|. +++.+... ...+++++||||||||.+++.++ ..+.+++|++||++|
T Consensus 356 ~~~~~~~~~l-----pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSL-----PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHS-----SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH
T ss_pred HHHHHHHHhC-----CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 3445555555 78 8999999 88887542 22589999999999999986554 346799999999999
Q ss_pred HHHHHHHHHhC----CCceeeeccccccc----------cCCCcEEEEcceecc---ccCCccEEEEccccccCCCCcCh
Q 010534 114 AWEVAKRLNKA----NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGF 176 (508)
Q Consensus 114 a~q~~~~l~~~----g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~rg~ 176 (508)
|.|+++++.++ |+++..++|+.... .....++|+|++.+. .+.++++|||||+|++...++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~- 508 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQRE- 508 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----C-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHH-
Confidence 99999998753 78999999975432 124789999997763 4689999999999998654322
Q ss_pred HHHHHHhcccCCceEEEccCCcchHHHHHHhHcCC-cEEEEeeee--cCCCCCC-------CCcccccc-cc-CCCCEEE
Q 010534 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQSYER--LSPLVPL-------NVPLGSFS-NI-QTGDCIV 244 (508)
Q Consensus 177 ~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~--~~~~~~~-------~~~l~~l~-~~-~~~~~iv 244 (508)
.+.........+..++++.+....+. ..++ ...+..... ..+.... ...+..+. .. ..+.+++
T Consensus 509 ----~l~~~~~~~~vL~mSATp~p~tl~~~-~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlV 583 (780)
T 1gm5_A 509 ----ALMNKGKMVDTLVMSATPIPRSMALA-FYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFI 583 (780)
T ss_dssp ----CCCSSSSCCCEEEEESSCCCHHHHHH-HTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCC
T ss_pred ----HHHHhCCCCCEEEEeCCCCHHHHHHH-HhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEE
Confidence 12222222222333333333222211 2222 111111000 0011000 00011111 11 2334444
Q ss_pred Ee-eH--------HHHHHHHHHHHh-c-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEE
Q 010534 245 TF-SR--------HAIYRLKKAIES-R-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (508)
Q Consensus 245 ~~-s~--------~~~~~l~~~L~~-~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~V 312 (508)
|+ +. ..++.+++.|.+ . ...++..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 584 f~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~--G~~~ILVaT~vie~GIDiP~v~~V 661 (780)
T 1gm5_A 584 VYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE--GRYDILVSTTVIEVGIDVPRANVM 661 (780)
T ss_dssp BCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT--TSSSBCCCSSCCCSCSCCTTCCEE
T ss_pred EecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEECCCCCccccCCCCCEE
Confidence 44 22 457788888876 3 23479999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 313 I~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
|+++.++ .+.+++.||+||+||.|.. |.|+.++.
T Consensus 662 Ii~d~~r--------~~l~~l~Qr~GRaGR~g~~---g~~ill~~ 695 (780)
T 1gm5_A 662 VIENPER--------FGLAQLHQLRGRVGRGGQE---AYCFLVVG 695 (780)
T ss_dssp EBCSCSS--------SCTTHHHHHHHTSCCSSTT---CEEECCCC
T ss_pred EEeCCCC--------CCHHHHHHHhcccCcCCCC---CEEEEEEC
Confidence 9988742 3678899999999999987 99998876
No 41
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=6.2e-31 Score=290.98 Aligned_cols=283 Identities=16% Similarity=0.141 Sum_probs=157.0
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c-----CCCEEEEcchHHHHHHHHHHHHhC--
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA-- 124 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~-----~~~~i~l~P~r~La~q~~~~l~~~-- 124 (508)
+++..|+++|. +++.+ ++++++++++|||||||++++.++. . +++++|++|+++|+.|+++.++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~--l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHH--HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 36889999999 99988 4589999999999999999755543 2 568899999999999999998865
Q ss_pred --CCceeeecccccccc------CCCcEEEEcceecc---------ccCCccEEEEccccccCCCCcChHHHHHHhcc--
Q 010534 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-- 185 (508)
Q Consensus 125 --g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l-- 185 (508)
|+.+..++|+..... .+..++|+||+.+. .+.++++|||||||++... +. +..++..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~--~~-~~~i~~~~~~ 398 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLE 398 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT--SH-HHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC--cc-HHHHHHHHHH
Confidence 899999999874432 36789999997653 4567899999999999864 22 22222111
Q ss_pred -----cCCceEEEccCCcc------------hHHHHHHhHcCCcEE--------------------EEeeee-c------
Q 010534 186 -----CANELHLCGDPAAV------------PLIQQILQVTGDDVK--------------------VQSYER-L------ 221 (508)
Q Consensus 186 -----~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~--------------------v~~~~~-~------ 221 (508)
.....++++.+++. ..+..+....+.... ...+.. .
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 12223334333332 223333322221110 000000 0
Q ss_pred ------------------------CC-CCC--------------------------------------------------
Q 010534 222 ------------------------SP-LVP-------------------------------------------------- 226 (508)
Q Consensus 222 ------------------------~~-~~~-------------------------------------------------- 226 (508)
.+ ...
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000
Q ss_pred ----------------------------------------------------CCCc---c-ccccc----cCCCCEEEEe
Q 010534 227 ----------------------------------------------------LNVP---L-GSFSN----IQTGDCIVTF 246 (508)
Q Consensus 227 ----------------------------------------------------~~~~---l-~~l~~----~~~~~~iv~~ 246 (508)
.... + ..+.+ ...+.+|||+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0000 0 00111 2345666666
Q ss_pred -eHHHHHHHHHHHHhcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEE
Q 010534 247 -SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (508)
Q Consensus 247 -s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI 313 (508)
+++.++.+++.|++.+ +.....+||+|++++|..+++.|++ +|+.+|||||+++++|||+| +++||
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~-~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc-cCCceEEEEcCchhcCCCchhCCEEE
Confidence 8999999999998741 2256677999999999999999996 36789999999999999997 99999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+++. |.++..|+||+|| ||... |.|+.+....
T Consensus 718 ~yd~---------p~s~~~~iQr~GR-GR~~~----g~~i~l~~~~ 749 (797)
T 4a2q_A 718 LYEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 749 (797)
T ss_dssp EESC---------CSCHHHHHTC--------C----CCEEEEECCH
T ss_pred EeCC---------CCCHHHHHHhcCC-CCCCC----ceEEEEEeCC
Confidence 9999 6799999999999 99954 8888887664
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=2.2e-31 Score=278.02 Aligned_cols=272 Identities=18% Similarity=0.138 Sum_probs=192.3
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCc-eeeecccccc
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQERE 137 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~-~~~~~g~~~~ 137 (508)
.|++.|. +++.+ .+++++++++|||||||++++..+.. +++++|++|+++|+.|+++++.++|.+ ++.++|+...
T Consensus 93 ~l~~~Q~~ai~~i--~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 93 SLRDYQEKALERW--LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE 170 (472)
T ss_dssp CBCHHHHHHHHHH--TTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC
T ss_pred CcCHHHHHHHHHH--HhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC
Confidence 6899999 88877 45678999999999999998776654 578999999999999999999999999 9999887654
Q ss_pred ccCCCcEEEEcceeccc-----cCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcch------------
Q 010534 138 EVDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP------------ 200 (508)
Q Consensus 138 ~~~~~~~iv~T~e~~~~-----l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~------------ 200 (508)
...++++|++.+.. ..++++||+||||++.+. ++. .++-.+.+ ...+..++++..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~--~~~--~~~~~~~~-~~~l~lSATp~~~~~~~~~l~~~~ 242 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE--SYV--QIAQMSIA-PFRLGLTATFEREDGRHEILKEVV 242 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTST--TTH--HHHHTCCC-SEEEEEESCCCCTTSGGGSHHHHT
T ss_pred ---cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCCh--HHH--HHHHhcCC-CeEEEEecCccCCCCHHHHHHHHh
Confidence 46799999976532 256999999999999864 332 23322222 222322322220
Q ss_pred -------HHHHHHhHcCCcEEEEeee-ecCC--------------------------CCCCC------------------
Q 010534 201 -------LIQQILQVTGDDVKVQSYE-RLSP--------------------------LVPLN------------------ 228 (508)
Q Consensus 201 -------~~~~l~~~~~~~~~v~~~~-~~~~--------------------------~~~~~------------------ 228 (508)
....+.........+.... ...+ .....
T Consensus 243 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (472)
T 2fwr_A 243 GGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRA 322 (472)
T ss_dssp CCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHH
T ss_pred CCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHH
Confidence 1122211111111111100 0000 00000
Q ss_pred ---------------Ccc-ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCC
Q 010534 229 ---------------VPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291 (508)
Q Consensus 229 ---------------~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~ 291 (508)
..+ ..+.....+.++||+ +++.++.+++.| .+..+||+++.++|.++++.|++ |+
T Consensus 323 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l------~~~~~~g~~~~~~R~~~~~~F~~--g~ 394 (472)
T 2fwr_A 323 WEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF------LIPAITHRTSREEREEILEGFRT--GR 394 (472)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT------TCCBCCSSSCSHHHHTHHHHHHH--SS
T ss_pred HHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh------CcceeeCCCCHHHHHHHHHHHhC--CC
Confidence 000 011222345566666 799999999887 35678999999999999999999 99
Q ss_pred eeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 292 FDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 292 ~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
.+|||||+++++|+|+| ++.||+++. |.++..|.||+||+||.|++++.+.+|.+..++
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~---------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSG---------SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECC---------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCEEEEcCchhcCcccccCcEEEEECC---------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999997 999999988 669999999999999999743567888777654
No 43
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=7.2e-31 Score=269.94 Aligned_cols=264 Identities=16% Similarity=0.146 Sum_probs=167.8
Q ss_pred CCceEEEEccCCCchHHHHHHHH-----HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccc-ccCCCcEEEEcc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL-----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAVTV 149 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l-----~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~-~~~~~~~iv~T~ 149 (508)
++++++++||||||||++++.++ ..+++++|++||++|+.|+++.+. |..+...+|.... ...+..+.++|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccccCCCCceEEEEch
Confidence 37899999999999999974433 345689999999999999999887 6677777665322 222444555665
Q ss_pred eecc-------ccCCccEEEEccccccCCCCcChHHHHHHhcc-cCCceEEEccCCcc-hHHHHHHhHcCCcEEEEeeee
Q 010534 150 EMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLCGDPAAV-PLIQQILQVTGDDVKVQSYER 220 (508)
Q Consensus 150 e~~~-------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l-~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~v~~~~~ 220 (508)
..+. .+.++++|||||+|++... .......+..+ .....++++.+++. +.+..+ .....++.....
T Consensus 79 ~~l~~~l~~~~~~~~l~~vViDEaH~~~~~--~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~---~~~~~~i~~~~~ 153 (431)
T 2v6i_A 79 STFTMKLLQGVRVPNYNLYIMDEAHFLDPA--SVAARGYIETRVSMGDAGAIFMTATPPGTTEAF---PPSNSPIIDEET 153 (431)
T ss_dssp HHHHHHHHHTCCCCCCSEEEEESTTCCSHH--HHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS---CCCSSCCEEEEC
T ss_pred HHHHHHHhcCccccCCCEEEEeCCccCCcc--HHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh---cCCCCceeeccc
Confidence 4332 2688999999999998411 11112222222 12234444433332 211111 111111111111
Q ss_pred cCCCCCCCCccccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc
Q 010534 221 LSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299 (508)
Q Consensus 221 ~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~ 299 (508)
..+.......+..+.+ ..+.++||+ ++++++.+++.|++.+. ++..+||+ +|.++++.|++ |+.+|||||+
T Consensus 154 ~~~~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~----~r~~~~~~f~~--g~~~vLVaT~ 225 (431)
T 2v6i_A 154 RIPDKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGK-KVLYLNRK----TFESEYPKCKS--EKWDFVITTD 225 (431)
T ss_dssp CCCSSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTC-CEEEESTT----THHHHTTHHHH--SCCSEEEECG
T ss_pred cCCHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCC-eEEEeCCc----cHHHHHHhhcC--CCCeEEEECc
Confidence 1121111222222333 356677776 89999999999998865 89999997 57789999999 9999999999
Q ss_pred cccccccccccEEEEcccccc---cC-----cccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 300 AIGMGLNLNISRIIFSTMKKF---DG-----VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 300 ~~~~Gidipv~~VI~~~~~~~---d~-----~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
++++|+|+|+++||+++..+. |. ....|.+.++|.||+||+||.|.. .|.++.+.
T Consensus 226 v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~--~~~~~~~~ 288 (431)
T 2v6i_A 226 ISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK--LGDIYAYS 288 (431)
T ss_dssp GGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCCEEEEC
T ss_pred hHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC--CCeEEEEc
Confidence 999999999989877654431 10 112477999999999999999853 14445444
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=6.9e-31 Score=276.86 Aligned_cols=281 Identities=15% Similarity=0.051 Sum_probs=193.4
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cCC-CEEEEcchHHHHHHHHHHHHhCC----Cce
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSS-SGIYCGPLRLLAWEVAKRLNKAN----VSC 128 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~~-~~i~l~P~r~La~q~~~~l~~~g----~~~ 128 (508)
...|++.|. +++.+.. ++++++++|||||||++++..+. ..+ +++|++|+++|+.|+++++.+++ ..+
T Consensus 111 ~~~l~~~Q~~ai~~~~~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHHH--HSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCCCHHHHHHHHHHHh--cCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 347999999 9988854 68999999999999999865553 243 89999999999999999999763 356
Q ss_pred eeecccccccc---CCCcEEEEcceecc-----ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcch
Q 010534 129 DLITGQEREEV---DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 200 (508)
Q Consensus 129 ~~~~g~~~~~~---~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~ 200 (508)
..++|+..... .+..++++|++.+. .+.++++|||||||++.. ..+..++..+......+..++++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRD 264 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGG
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCC
Confidence 77777654332 46789999996542 357899999999999974 2344444444333222222322211
Q ss_pred H---HHHHHhHcCCcEE-----------------EEeeeecCC---------CCCCC------------Ccc-cccccc-
Q 010534 201 L---IQQILQVTGDDVK-----------------VQSYERLSP---------LVPLN------------VPL-GSFSNI- 237 (508)
Q Consensus 201 ~---~~~l~~~~~~~~~-----------------v~~~~~~~~---------~~~~~------------~~l-~~l~~~- 237 (508)
. ...+....+.... +.......+ ..... ..+ ..+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 344 (510)
T 2oca_A 265 GKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLA 344 (510)
T ss_dssp CSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 1 1112222222110 000000000 00000 000 011111
Q ss_pred -CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEec-cccccccccc-ccEEE
Q 010534 238 -QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRII 313 (508)
Q Consensus 238 -~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT-~~~~~Gidip-v~~VI 313 (508)
..+..+++| +.+.++.+++.|.+.+. ++..+||++++++|.++++.|++ |+.+||||| +++++|+|+| +++||
T Consensus 345 ~~~~~~~ivf~~~~~~~~l~~~L~~~~~-~v~~~~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip~v~~vi 421 (510)
T 2oca_A 345 QKDENAFVMFKHVSHGKAIFDLIKNEYD-KVYYVSGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVKNLHHVV 421 (510)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHTTCS-SEEEESSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCCSEEEEE
T ss_pred hcCCCeEEEEecHHHHHHHHHHHHHcCC-CeEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccccCcEEE
Confidence 234444444 78889999999998876 89999999999999999999999 999999999 9999999997 99999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~ 357 (508)
+++. |.+..++.||+||+||.|.++....++.+.+
T Consensus 422 ~~~~---------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 422 LAHG---------VKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp ESSC---------CCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred EeCC---------CCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 9988 5699999999999999998633445555444
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.7e-29 Score=286.59 Aligned_cols=283 Identities=16% Similarity=0.177 Sum_probs=195.5
Q ss_pred cCCCCCCccc-cchHHHhc--CC--ceEEEEccCCCchHHHHHHH----HHcCCCEEEEcchHHHHHHHHHHHHh----C
Q 010534 58 DFTDLTRPHT-WYPLARKK--VR--KVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK----A 124 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~--~~--~~~iv~~pTGsGKT~~~~~~----l~~~~~~i~l~P~r~La~q~~~~l~~----~ 124 (508)
++. +++.|. +++.+... ++ .+++++||||||||.+++.+ +..+++++|++||++|+.|+++++.+ +
T Consensus 601 ~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~ 679 (1151)
T 2eyq_A 601 PFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW 679 (1151)
T ss_dssp CSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTT
T ss_pred CCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcC
Confidence 665 699999 99888642 23 49999999999999997543 34567889999999999999999984 3
Q ss_pred CCceeeeccccccc----------cCCCcEEEEcceecc---ccCCccEEEEccccccCCCCcChHHHHHHhcccCCceE
Q 010534 125 NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191 (508)
Q Consensus 125 g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~ 191 (508)
++.+..++|..... .....++++|++.+. .+.++++|||||+|++. ......+..+......
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~~~~~v 754 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG-----VRHKERIKAMRANVDI 754 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSC-----HHHHHHHHHHHTTSEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcC-----hHHHHHHHHhcCCCCE
Confidence 67788877643221 125789999997664 35889999999999963 3444444444443333
Q ss_pred EEccCCcchHHHHHHhHcCCcEEEEeeeecCCCCC-------CCCcc-c-cccccC-CCCEEEEe-eHHHHHHHHHHHHh
Q 010534 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP-------LNVPL-G-SFSNIQ-TGDCIVTF-SRHAIYRLKKAIES 260 (508)
Q Consensus 192 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~-------~~~~l-~-~l~~~~-~~~~iv~~-s~~~~~~l~~~L~~ 260 (508)
+..++++.+....+.........+........... ....+ . .+.... .+.++||+ +++.++.+++.|++
T Consensus 755 l~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~ 834 (1151)
T 2eyq_A 755 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 834 (1151)
T ss_dssp EEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHH
T ss_pred EEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 33344434333222211111111111000000000 00000 0 111222 34445554 68899999999988
Q ss_pred cC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhc
Q 010534 261 RG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338 (508)
Q Consensus 261 ~~-~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~G 338 (508)
.. ..++..+||+|++++|.++++.|++ |+.+|||||+++++|+|+| +++||+.+.. +.+..++.||+|
T Consensus 835 ~~p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~VLVaT~v~e~GiDip~v~~VIi~~~~--------~~~l~~l~Qr~G 904 (1151)
T 2eyq_A 835 LVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERAD--------HFGLAQLHQLRG 904 (1151)
T ss_dssp HCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCEEEESSTTGGGSCCTTEEEEEETTTT--------SSCHHHHHHHHT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEECCcceeeecccCCcEEEEeCCC--------CCCHHHHHHHHh
Confidence 62 3489999999999999999999999 9999999999999999997 9999987663 236889999999
Q ss_pred cCCCCCCCCCcEEEEEecCCC
Q 010534 339 RAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 339 RagR~g~~~~~G~~~~~~~~~ 359 (508)
|+||.|.. |.|+.+++++
T Consensus 905 RvgR~g~~---g~~~ll~~~~ 922 (1151)
T 2eyq_A 905 RVGRSHHQ---AYAWLLTPHP 922 (1151)
T ss_dssp TCCBTTBC---EEEEEEECCG
T ss_pred ccCcCCCc---eEEEEEECCc
Confidence 99999977 9999888764
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=7.8e-30 Score=287.71 Aligned_cols=244 Identities=15% Similarity=0.148 Sum_probs=163.1
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHhC----CC-
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKA----NV- 126 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~~----g~- 126 (508)
+|+. | ++|. ++|.+ +++++++++||||||||+.++..+ ..+++++|++||++||.|++++++++ ++
T Consensus 54 ~g~~-p-~iQ~~ai~~i--l~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~ 129 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRI--LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 129 (1054)
T ss_dssp TCSC-C-HHHHHHHHHH--HTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred cCCC-H-HHHHHHHHHH--HhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCC
Confidence 4899 9 9999 99998 468999999999999998433333 23568999999999999999999853 56
Q ss_pred ---ceeeecccccccc--------CCCcEEEEcceec----cccCCccEEEEccccccCCCCcChHHHHHH--hccc---
Q 010534 127 ---SCDLITGQEREEV--------DGAKHRAVTVEMA----DVVSDYDCAVIDEIQMLGCKTRGFSFTRAL--LGIC--- 186 (508)
Q Consensus 127 ---~~~~~~g~~~~~~--------~~~~~iv~T~e~~----~~l~~~~~iViDEah~~~~~~rg~~~~~~l--l~l~--- 186 (508)
.++.++|+..... .+..++|+||+.+ ..+.+++++||||||++.+ +|..+...+ +++.
T Consensus 130 ~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~ 207 (1054)
T 1gku_B 130 TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDL 207 (1054)
T ss_dssp GGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEET
T ss_pred ccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhh
Confidence 7888888654321 2378999999554 2356899999999999985 576665554 3321
Q ss_pred -------CCceEEEccCCcch--HHHHHHhHc-C-----CcE---EEEeeeecCCCCCCCCccccccccCCCCEEEEe-e
Q 010534 187 -------ANELHLCGDPAAVP--LIQQILQVT-G-----DDV---KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-S 247 (508)
Q Consensus 187 -------~~~~~~~~~~~~~~--~~~~l~~~~-~-----~~~---~v~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s 247 (508)
.....++..+.+.. ....+.... . ... .+..... + ......+..+.+..++.++||+ +
T Consensus 208 ~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~--~-~~k~~~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 208 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAV--N-DESISTLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--S-CCCTTTTHHHHTTSCSCEEEEESS
T ss_pred hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEe--c-hhHHHHHHHHHhhcCCCEEEEEcC
Confidence 11223333332221 111222211 0 000 0111111 1 1112222222222245666666 8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEe----ccccccccccc-c-cEEEEcccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN-I-SRIIFSTMK 318 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa----T~~~~~Gidip-v-~~VI~~~~~ 318 (508)
++.++.+++.|++. ..+..+||++. .+++.|++ |+.+|||| |+++++|||+| | ++||+++.+
T Consensus 285 ~~~a~~l~~~L~~~--~~v~~lhg~~~-----~~l~~F~~--G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 285 GEEAEEIYESLKNK--FRIGIVTATKK-----GDYEKFVE--GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHHTTTTS--SCEEECTTSSS-----HHHHHHHH--TSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHHHHHhhc--cCeeEEeccHH-----HHHHHHHc--CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99999999999887 58999999983 67889999 99999999 99999999997 5 999999998
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=3.3e-30 Score=290.63 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=168.9
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHh---CCCcee
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK---ANVSCD 129 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~---~g~~~~ 129 (508)
++ .|+++|. ++|.+ +++++++++||||||||++++..+. .+++++|++|||+||.|+++++++ .|+.+.
T Consensus 76 gf-~pt~iQ~~ai~~i--l~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRI--VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIF 152 (1104)
T ss_dssp SS-CCCHHHHHHHHHH--TTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEE
T ss_pred CC-CCCHHHHHHHHHH--HcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEE
Confidence 66 6999999 99998 5689999999999999998755443 467899999999999999999998 467888
Q ss_pred eeccccccc----------cCCCcEEEEcceec-cc-----cCCccEEEEccccccCCCC---------cChHHH--HHH
Q 010534 130 LITGQEREE----------VDGAKHRAVTVEMA-DV-----VSDYDCAVIDEIQMLGCKT---------RGFSFT--RAL 182 (508)
Q Consensus 130 ~~~g~~~~~----------~~~~~~iv~T~e~~-~~-----l~~~~~iViDEah~~~~~~---------rg~~~~--~~l 182 (508)
.++|+.... .....++|+||+.+ +. +.+++++||||||++.... +|+... ..+
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 999876541 12478999999766 33 5789999999999877532 344322 223
Q ss_pred hc-cc-----------CCceEEEccCCcch--HHHHHHhH-cCCcE--------EEEeeeecCCCCCCCCcc-ccccccC
Q 010534 183 LG-IC-----------ANELHLCGDPAAVP--LIQQILQV-TGDDV--------KVQSYERLSPLVPLNVPL-GSFSNIQ 238 (508)
Q Consensus 183 l~-l~-----------~~~~~~~~~~~~~~--~~~~l~~~-~~~~~--------~v~~~~~~~~~~~~~~~l-~~l~~~~ 238 (508)
+. ++ .....++.+++..+ ....+... .+-.+ .+....... .....+ ..+.. .
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll~~-~ 308 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS---RSKEKLVELLEI-F 308 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESC---CCHHHHHHHHHH-H
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEec---CHHHHHHHHHHh-c
Confidence 32 22 22233333333121 11112211 11000 011111000 011111 12222 3
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEE-EEcCCCCHHHHHHHHHHhcCCCCCeeEEEe----ccccccccccc--cc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 310 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~lhg~l~~~~R~~~~~~f~~~~g~~~ilVa----T~~~~~Gidip--v~ 310 (508)
++.++||+ +++.++.+++.|+..+. .+. .+||. |++ ++.|++ |+.+|||| |+++++|||+| |+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~-~~~~~lhg~-----rr~-l~~F~~--G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF-----EKN-FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTC-CEEESSSSH-----HHH-HHHHHH--TSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CeeeEecCc-----HHH-HHHHHC--CCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 46666666 89999999999999876 787 89992 555 999999 99999999 99999999995 79
Q ss_pred EEEEccccc
Q 010534 311 RIIFSTMKK 319 (508)
Q Consensus 311 ~VI~~~~~~ 319 (508)
+||++|+++
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 999999987
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=7.1e-30 Score=285.69 Aligned_cols=282 Identities=16% Similarity=0.139 Sum_probs=156.6
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc---------CCCEEEEcchHHHHHHHHHHHHhC---
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES---------SSSGIYCGPLRLLAWEVAKRLNKA--- 124 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~---------~~~~i~l~P~r~La~q~~~~l~~~--- 124 (508)
++..|+++|. +++.+ ++++++++.+|||||||++++..+.. +++++|++|+++|+.|+++.++++
T Consensus 245 ~~~~~r~~Q~~ai~~i--l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ---CCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5788999999 99988 55899999999999999998766643 467899999999999999998864
Q ss_pred -CCceeeecccccccc------CCCcEEEEcceecc---------ccCCccEEEEccccccCCCCcChHHHHHHhcc---
Q 010534 125 -NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--- 185 (508)
Q Consensus 125 -g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l--- 185 (508)
++.+..++|+..... .+..++|+|++++. .+.++++|||||||++... +. +..++..+
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~--~~-~~~i~~~~~~~ 399 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLEQ 399 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT--CH-HHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC--cc-HHHHHHHHHHH
Confidence 899999999864332 25689999997653 3567899999999999854 32 22222111
Q ss_pred ----cCCceEEEccCCcc------------hHHHHHHhHcCCc-------------------E-EEEeeee-cC------
Q 010534 186 ----CANELHLCGDPAAV------------PLIQQILQVTGDD-------------------V-KVQSYER-LS------ 222 (508)
Q Consensus 186 ----~~~~~~~~~~~~~~------------~~~~~l~~~~~~~-------------------~-~v~~~~~-~~------ 222 (508)
.....++++.+++. ..+..+....+.. . ....+.. ..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 11222333322222 2222222222210 0 0000000 00
Q ss_pred ------------------------C-CC--C-------------------------------------------------
Q 010534 223 ------------------------P-LV--P------------------------------------------------- 226 (508)
Q Consensus 223 ------------------------~-~~--~------------------------------------------------- 226 (508)
+ .. .
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00 0
Q ss_pred ---------------------------------------------------CCCc---c-ccccc----cCCCCEEEEe-
Q 010534 227 ---------------------------------------------------LNVP---L-GSFSN----IQTGDCIVTF- 246 (508)
Q Consensus 227 ---------------------------------------------------~~~~---l-~~l~~----~~~~~~iv~~- 246 (508)
.... + ..+.+ ...+.+|||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0000 0 01111 2345666666
Q ss_pred eHHHHHHHHHHHHhcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE
Q 010534 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
+++.++.+++.|.+.. +.....+||+|++.+|.++++.|++ +|+.+|||||+++++|||+| +++||+
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~-~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-cCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 8999999999999861 2246677999999999999999996 36789999999999999997 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+|. |.+..+|+||+|| ||.+. |.|+.+....
T Consensus 719 yD~---------p~s~~~~iQr~GR-GR~~~----g~vi~Li~~~ 749 (936)
T 4a2w_A 719 YEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 749 (936)
T ss_dssp ESC---------CSCSHHHHCC--------C----CCEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCC-CCCCC----CEEEEEEeCC
Confidence 999 6799999999999 99965 7787777654
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=1.7e-27 Score=255.21 Aligned_cols=281 Identities=14% Similarity=0.086 Sum_probs=167.8
Q ss_pred CCCCCccc-cchHHHhc---CCceEEEEccCCCchHHHHHHHHH-------------cCCCEEEEcchHHHHHHHH-HHH
Q 010534 60 TDLTRPHT-WYPLARKK---VRKVILHVGPTNSGKTHQALSRLE-------------SSSSGIYCGPLRLLAWEVA-KRL 121 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~---~~~~~iv~~pTGsGKT~~~~~~l~-------------~~~~~i~l~P~r~La~q~~-~~l 121 (508)
..++++|. +++.+... .++++++++|||||||++++..+. ..++++|++|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 47999999 88876431 357789999999999999754432 3468899999999999999 888
Q ss_pred HhCCCceeeeccccccccCCCcEEEEcceeccc------------cCCccEEEEccccccCCCCcChHHHHHHhcccCCc
Q 010534 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189 (508)
Q Consensus 122 ~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~ 189 (508)
+.++..+..+.+... ..+..++++|++.+.. ...+++||+||||++.... +..|..++-.+...
T Consensus 257 ~~~~~~~~~~~~~~~--~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~- 332 (590)
T 3h1t_A 257 TPFGDARHKIEGGKV--VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPA- 332 (590)
T ss_dssp TTTCSSEEECCC--C--CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTTS-
T ss_pred HhcchhhhhhhccCC--CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCcc-
Confidence 888877777665433 3467899999976532 2568999999999987531 12334444334322
Q ss_pred eEEEccCCcch-HHHHHHhHcCC-----------------cEEEEeeeecCCCC--------------------CCCCc-
Q 010534 190 LHLCGDPAAVP-LIQQILQVTGD-----------------DVKVQSYERLSPLV--------------------PLNVP- 230 (508)
Q Consensus 190 ~~~~~~~~~~~-~~~~l~~~~~~-----------------~~~v~~~~~~~~~~--------------------~~~~~- 230 (508)
..+..++++.. .........+. .+.+.......... .....
T Consensus 333 ~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (590)
T 3h1t_A 333 FQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDF 412 (590)
T ss_dssp EEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSH
T ss_pred eEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHh
Confidence 22222222221 11111222221 11111111000000 00000
Q ss_pred ----------------c-cccccc-CCCCEEEEe-eHHHHHHHHHHHHhcCC-------CeEEEEcCCCCHHHHHHHHHH
Q 010534 231 ----------------L-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYGSLPPETRTRQATR 284 (508)
Q Consensus 231 ----------------l-~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~lhg~l~~~~R~~~~~~ 284 (508)
+ ..+... ..+..+||+ +++.++.+++.|.+.+. ..+..+||+++. +|.++++.
T Consensus 413 ~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~ 491 (590)
T 3h1t_A 413 ERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSR 491 (590)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHH
T ss_pred hhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHH
Confidence 0 001111 224566666 89999999999987532 238889999764 79999999
Q ss_pred hcCCCCCee---EEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCC--CCCcEEEEEec
Q 010534 285 FNDASSEFD---VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--KFPVGEVTCLD 356 (508)
Q Consensus 285 f~~~~g~~~---ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~--~~~~G~~~~~~ 356 (508)
|++ |+.+ |||||+++++|+|+| +++||+++. |.|...|+||+||+||.++ ++..+.++.+.
T Consensus 492 F~~--~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~---------~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 492 FQE--LETSTPVILTTSQLLTTGVDAPTCKNVVLARV---------VNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHC--TTCCCCCEEEESSTTTTTCCCTTEEEEEEESC---------CCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HhC--CCCCCCEEEEECChhhcCccchheeEEEEEec---------CCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999 5544 899999999999997 999999888 5599999999999999886 44556666655
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=3.2e-27 Score=252.08 Aligned_cols=277 Identities=16% Similarity=0.079 Sum_probs=183.9
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHh----CCCce
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVSC 128 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~----~g~~~ 128 (508)
|+ .++++|. ++|.+ ++|+ |..++||+|||+++..++ +.+..++|++||++||.|.++.+.. +|+.+
T Consensus 81 G~-~pt~VQ~~~ip~l--l~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVAL--HDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SC-CCCHHHHHHHHHH--HTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CC-CCcHHHHHhhHHH--hCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 88 9999999 99988 4577 899999999999974443 2456789999999999999988774 59999
Q ss_pred eeeccccccc----cCCCcEEEEcceec------cc---------cCCccEEEEccccccC-CCCcC-------------
Q 010534 129 DLITGQEREE----VDGAKHRAVTVEMA------DV---------VSDYDCAVIDEIQMLG-CKTRG------------- 175 (508)
Q Consensus 129 ~~~~g~~~~~----~~~~~~iv~T~e~~------~~---------l~~~~~iViDEah~~~-~~~rg------------- 175 (508)
+.++|+.... ..+..++++||.-+ +. ++.+.++||||||.+. |..+.
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~ 235 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTK 235 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchh
Confidence 9998875322 12578999998333 11 3779999999999986 54221
Q ss_pred h--HHHHHHhcccC---------CceEE-----------------EccCCcchHHHHHHhH-----c---CCcEEEE---
Q 010534 176 F--SFTRALLGICA---------NELHL-----------------CGDPAAVPLIQQILQV-----T---GDDVKVQ--- 216 (508)
Q Consensus 176 ~--~~~~~ll~l~~---------~~~~~-----------------~~~~~~~~~~~~l~~~-----~---~~~~~v~--- 216 (508)
+ ....++-.++. ..... +.+++.......+... . ...+.+.
T Consensus 236 ~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~ 315 (844)
T 1tf5_A 236 LYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQ 315 (844)
T ss_dssp HHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTE
T ss_pred HHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCe
Confidence 1 12233333331 11111 1122111111111100 0 0011100
Q ss_pred -------------------------------------------e---eee----------------------------cC
Q 010534 217 -------------------------------------------S---YER----------------------------LS 222 (508)
Q Consensus 217 -------------------------------------------~---~~~----------------------------~~ 222 (508)
. |.+ ..
T Consensus 316 v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I 395 (844)
T 1tf5_A 316 VVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI 395 (844)
T ss_dssp EEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC
T ss_pred eEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEe
Confidence 0 000 00
Q ss_pred C----CCCC-------------CCcc-cccccc--CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHH
Q 010534 223 P----LVPL-------------NVPL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 281 (508)
Q Consensus 223 ~----~~~~-------------~~~l-~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~ 281 (508)
| .... ...+ ..+.+. ....++||+ |++.++.+++.|...+. .+.++||++...+|..+
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi-~~~vLhg~~~~rEr~ii 474 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI-PHQVLNAKNHEREAQII 474 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTC-CCEEECSSCHHHHHHHH
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCccHHHHHHH
Confidence 0 0000 0000 111111 234566666 89999999999999887 89999999988888767
Q ss_pred HHHhcCCCCCeeEEEeccccccccccc---------ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEE
Q 010534 282 ATRFNDASSEFDVLVASDAIGMGLNLN---------ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (508)
Q Consensus 282 ~~~f~~~~g~~~ilVaT~~~~~Gidip---------v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~ 352 (508)
.+.|+. | .|+||||+++||+||+ +.+||+++. |.|...|.||+||+||.|.. |.+
T Consensus 475 ~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~---------p~s~r~y~hr~GRTGRqG~~---G~s 538 (844)
T 1tf5_A 475 EEAGQK--G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER---------HESRRIDNQLRGRSGRQGDP---GIT 538 (844)
T ss_dssp TTTTST--T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC---------CSSHHHHHHHHTTSSGGGCC---EEE
T ss_pred HHcCCC--C--eEEEeCCccccCcCccccchhhhcCCcEEEEecC---------CCCHHHHHhhcCccccCCCC---CeE
Confidence 666765 5 5999999999999997 569999999 66999999999999999988 877
Q ss_pred EEec
Q 010534 353 TCLD 356 (508)
Q Consensus 353 ~~~~ 356 (508)
+.+.
T Consensus 539 ~~~v 542 (844)
T 1tf5_A 539 QFYL 542 (844)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5553
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=3e-26 Score=256.72 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=191.0
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cC--CCEEEEcchHHHHHHHHHHH-HhCCCceeee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--SSGIYCGPLRLLAWEVAKRL-NKANVSCDLI 131 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~--~~~i~l~P~r~La~q~~~~l-~~~g~~~~~~ 131 (508)
..|++.|. ++..+....+..+++.++||+|||.+++..+. .+ ++++|++|+ .|+.|+.+.+ +.+|.++.++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 56889999 88777665677899999999999999755442 23 379999999 9999999999 4689888888
Q ss_pred ccccc--------cccCCCcEEEEcceeccc---------cCCccEEEEccccccCCCCcCh-HHHHHHhcccCC-ceEE
Q 010534 132 TGQER--------EEVDGAKHRAVTVEMADV---------VSDYDCAVIDEIQMLGCKTRGF-SFTRALLGICAN-ELHL 192 (508)
Q Consensus 132 ~g~~~--------~~~~~~~~iv~T~e~~~~---------l~~~~~iViDEah~~~~~~rg~-~~~~~ll~l~~~-~~~~ 192 (508)
+|... .......++++|++++.. ..++++||+||||++....... .....+..+... ...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L 310 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVL 310 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEE
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEE
Confidence 76542 122356789999877632 2579999999999997542221 112222222111 1112
Q ss_pred EccCCcch-----HHH------------------H------HH---hHc--C----------------------------
Q 010534 193 CGDPAAVP-----LIQ------------------Q------IL---QVT--G---------------------------- 210 (508)
Q Consensus 193 ~~~~~~~~-----~~~------------------~------l~---~~~--~---------------------------- 210 (508)
+.++++.. +.. . +. ... +
T Consensus 311 ~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~ 390 (968)
T 3dmq_A 311 LLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAAN 390 (968)
T ss_dssp ESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTC
T ss_pred EEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhccc
Confidence 22222110 000 0 00 000 0
Q ss_pred -----------------------CcEEEEeee-ecCCC------------------------------------------
Q 010534 211 -----------------------DDVKVQSYE-RLSPL------------------------------------------ 224 (508)
Q Consensus 211 -----------------------~~~~v~~~~-~~~~~------------------------------------------ 224 (508)
..+.+.... ....+
T Consensus 391 ~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 470 (968)
T 3dmq_A 391 SDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYP 470 (968)
T ss_dssp CCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCS
T ss_pred chhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcCh
Confidence 000000000 00000
Q ss_pred ------------CCC-----CCcc-ccccccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHh
Q 010534 225 ------------VPL-----NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285 (508)
Q Consensus 225 ------------~~~-----~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f 285 (508)
... ...+ ..+.....+.++||+ +++.++.+++.|.+..+.++..+||+|++.+|..+++.|
T Consensus 471 e~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 471 ERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp GGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred HHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 000 0000 011112345566666 899999999999964344899999999999999999999
Q ss_pred cCCCCC--eeEEEeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CH-
Q 010534 286 NDASSE--FDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DL- 360 (508)
Q Consensus 286 ~~~~g~--~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~- 360 (508)
++ |+ .+|||||+++++|+|+| +++||+++. |.++..|.||+||+||.|.. +...++.+..+ ..
T Consensus 551 ~~--g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~---------p~~~~~~~Q~~GR~~R~Gq~-~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 551 AE--EDTGAQVLLCSEIGSEGRNFQFASHMVMFDL---------PFNPDLLEQRIGRLDRIGQA-HDIQIHVPYLEKTAQ 618 (968)
T ss_dssp HS--TTSSCEEEECSCCTTCSSCCTTCCEEECSSC---------CSSHHHHHHHHHTTSCSSSC-SCCEEEEEEETTSHH
T ss_pred hC--CCCcccEEEecchhhcCCCcccCcEEEEecC---------CCCHHHHHHHhhccccCCCC-ceEEEEEecCCChHH
Confidence 99 66 99999999999999997 999999999 67999999999999999986 33455555433 32
Q ss_pred HHHHhhh
Q 010534 361 PLLHKSL 367 (508)
Q Consensus 361 ~~~~~~~ 367 (508)
+.+.+..
T Consensus 619 e~i~~~~ 625 (968)
T 3dmq_A 619 SVLVRWY 625 (968)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=2.1e-25 Score=237.47 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=87.1
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecccccccccccc---------
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI--------- 309 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidipv--------- 309 (508)
..++||+ |+..++.+++.|++.+. .+.++||+....+|..+.+.|+. | .|+||||+++||+||+.
T Consensus 442 qpvLVft~sie~se~Ls~~L~~~gi-~~~vLnak~~~rEa~iia~agr~--G--~VtIATnmAgRGtDI~l~gn~~~~~~ 516 (853)
T 2fsf_A 442 QPVLVGTISIEKSELVSNELTKAGI-KHNVLNAKFHANEAAIVAQAGYP--A--AVTIATNMAGRGTDIVLGGSWQAEVA 516 (853)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHTTC-CCEECCTTCHHHHHHHHHTTTST--T--CEEEEESCCSSCSCCCTTCCHHHHHH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHHHHhcCCC--C--eEEEecccccCCcCccCCCchHhhhh
Confidence 3466666 89999999999999887 89999999988888888889988 7 59999999999999963
Q ss_pred -----------------------------cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 310 -----------------------------SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 310 -----------------------------~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
.+||+++. |.|...|.||+||+||.|.. |....+.
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~---------pes~riy~qr~GRTGRqGd~---G~s~~fl 580 (853)
T 2fsf_A 517 ALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER---------HESRRIDNQLRGRSGRQGDA---GSSRFYL 580 (853)
T ss_dssp HCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC---------CSSHHHHHHHHTTSSGGGCC---EEEEEEE
T ss_pred hcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC---------CCCHHHHHhhccccccCCCC---eeEEEEe
Confidence 49999988 66999999999999999987 7765443
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.92 E-value=6.1e-25 Score=230.83 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=185.2
Q ss_pred CCCCCccc-cchHHHh--cCCceEEEEccCCCchHHHHHHHHH---c---CCCEEEEcchHHHHHHHHHHHHhC--CCce
Q 010534 60 TDLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSRLE---S---SSSGIYCGPLRLLAWEVAKRLNKA--NVSC 128 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~--~~~~~~iv~~pTGsGKT~~~~~~l~---~---~~~~i~l~P~r~La~q~~~~l~~~--g~~~ 128 (508)
..|+++|. ++..+.. ..++.+++..+||+|||.+++..+. . .++++|++| ..|+.|+.+.+.++ +..+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 46888998 7765532 3577899999999999999754442 2 257899999 56889999999876 4667
Q ss_pred eeeccccccc-cCCCcEEEEcceeccc-----cCCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcch-H
Q 010534 129 DLITGQEREE-VDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP-L 201 (508)
Q Consensus 129 ~~~~g~~~~~-~~~~~~iv~T~e~~~~-----l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~-~ 201 (508)
.+++|..... ..+..++++|++.+.. ...+++||+||||.+.+. +.....++..+.+. ..++.++++.. .
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~--~~~~~~~l~~l~~~-~~l~LTaTP~~n~ 191 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNP--QTKIFKAVKELKSK-YRIALTGTPIENK 191 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCT--TSHHHHHHHTSCEE-EEEEECSSCSTTC
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCH--hHHHHHHHHhhccC-cEEEEecCCCCCC
Confidence 7777765322 2356789999877643 257899999999999754 44556666665443 23333333321 1
Q ss_pred HHH-------------------------------------HHhHc------------------CCcEEEEeeeecCCCC-
Q 010534 202 IQQ-------------------------------------ILQVT------------------GDDVKVQSYERLSPLV- 225 (508)
Q Consensus 202 ~~~-------------------------------------l~~~~------------------~~~~~v~~~~~~~~~~- 225 (508)
..+ +.... +.......+....+..
T Consensus 192 ~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~ 271 (500)
T 1z63_A 192 VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQA 271 (500)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHH
Confidence 111 10000 0100100000000000
Q ss_pred ---------------C-----------------------------------CCCcc----cccccc--CCCCEEEEe-eH
Q 010534 226 ---------------P-----------------------------------LNVPL----GSFSNI--QTGDCIVTF-SR 248 (508)
Q Consensus 226 ---------------~-----------------------------------~~~~l----~~l~~~--~~~~~iv~~-s~ 248 (508)
. ....+ ..+.+. ....++||. ++
T Consensus 272 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~ 351 (500)
T 1z63_A 272 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFV 351 (500)
T ss_dssp HHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehH
Confidence 0 00000 001111 234556665 78
Q ss_pred HHHHHHHHHHHhc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcccccccCcccc
Q 010534 249 HAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 326 (508)
Q Consensus 249 ~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~ 326 (508)
..++.+++.|... +. .+..+||++++++|.++++.|++++....+|+||+++++|+|+| +++||+++.
T Consensus 352 ~~~~~l~~~l~~~~~~-~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~--------- 421 (500)
T 1z63_A 352 DMGKIIRNIIEKELNT-EVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDR--------- 421 (500)
T ss_dssp HHHHHHHHHHHHHHTC-CCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSC---------
T ss_pred HHHHHHHHHHHHhhCC-CeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCC---------
Confidence 9999999999875 54 88999999999999999999998222234899999999999996 999999998
Q ss_pred cCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 327 p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
|+++..+.||+||++|.|+. ....++.+..++
T Consensus 422 ~~~~~~~~Q~~gR~~R~Gq~-~~v~v~~lv~~~ 453 (500)
T 1z63_A 422 WWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 453 (500)
T ss_dssp CSCC---CHHHHTTTTTTTT-SCEEEEEEEETT
T ss_pred CCCcchHHHHHHHHHHcCCC-CeeEEEEEEeCC
Confidence 77999999999999999986 445667665544
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1.4e-24 Score=231.35 Aligned_cols=278 Identities=16% Similarity=0.122 Sum_probs=184.1
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHh----CCCc
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~----~g~~ 127 (508)
.|+ .++++|. .+|.+ ++|+ |..++||+|||+++..++ +.+..+++++||++||.|.++.+.. +|+.
T Consensus 108 lG~-rP~~VQ~~~ip~L--l~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLs 182 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAAL--HLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQ 182 (922)
T ss_dssp HSC-CCCHHHHHHHHHH--HTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCC-CCCHHHHHHHHhH--hcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 377 8999999 99988 4576 999999999999964333 3456889999999999999888774 5999
Q ss_pred eeeeccccccc----cCCCcEEEEcceec------c---------ccCCccEEEEccccccC-CCCc-------------
Q 010534 128 CDLITGQEREE----VDGAKHRAVTVEMA------D---------VVSDYDCAVIDEIQMLG-CKTR------------- 174 (508)
Q Consensus 128 ~~~~~g~~~~~----~~~~~~iv~T~e~~------~---------~l~~~~~iViDEah~~~-~~~r------------- 174 (508)
+++++|+.... ..+..++++|+.-+ + .++.+.++||||||.+. |..|
T Consensus 183 v~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 99999875322 12578999998433 1 13679999999999986 4321
Q ss_pred Ch--HHHHHHhccc---------CCceEE-----------------EccCCcchHHHHHHh---H---c--CCcEEEE--
Q 010534 175 GF--SFTRALLGIC---------ANELHL-----------------CGDPAAVPLIQQILQ---V---T--GDDVKVQ-- 216 (508)
Q Consensus 175 g~--~~~~~ll~l~---------~~~~~~-----------------~~~~~~~~~~~~l~~---~---~--~~~~~v~-- 216 (508)
|+ ....++-.++ +..... +.+++..++...+.. . . ...+.|.
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 11 1223333343 111111 122221111111110 0 0 0001000
Q ss_pred --------------------------------------------e---ee------------------------------
Q 010534 217 --------------------------------------------S---YE------------------------------ 219 (508)
Q Consensus 217 --------------------------------------------~---~~------------------------------ 219 (508)
. |.
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 0 00
Q ss_pred --ecCCCCCC-------------CCcc-ccccc-cCCC-CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHH
Q 010534 220 --RLSPLVPL-------------NVPL-GSFSN-IQTG-DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280 (508)
Q Consensus 220 --~~~~~~~~-------------~~~l-~~l~~-~~~~-~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~ 280 (508)
...|.... ...+ ..+.+ ...+ .++||+ |+..++.+++.|++.+. .+.++||+....++..
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi-~~~vLnak~~~rEa~i 501 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI-PHNVLNAKYHEQEATI 501 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC-CCEEECSSCHHHHHHH
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHH
Confidence 00000000 0000 11111 1233 466666 89999999999999887 8999999988888877
Q ss_pred HHHHhcCCCCCeeEEEeccccccccccc-c--------------------------------------------------
Q 010534 281 QATRFNDASSEFDVLVASDAIGMGLNLN-I-------------------------------------------------- 309 (508)
Q Consensus 281 ~~~~f~~~~g~~~ilVaT~~~~~Gidip-v-------------------------------------------------- 309 (508)
+.+.|+. | .|+||||+++||+||+ +
T Consensus 502 ia~agr~--G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 502 IAVAGRR--G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHTTTST--T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHhcCCC--C--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 8888887 6 5999999999999996 3
Q ss_pred --cEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 310 --SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 310 --~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
.+||+++. |.|...|.||+||+||.|.. |....+.
T Consensus 578 GGlhVI~te~---------pes~riy~qr~GRTGRqGdp---G~s~ffl 614 (922)
T 1nkt_A 578 GGLYVLGTER---------HESRRIDNQLRGRSGRQGDP---GESRFYL 614 (922)
T ss_dssp TSEEEEECSC---------CSSHHHHHHHHHTSSGGGCC---EEEEEEE
T ss_pred CCcEEEeccC---------CCCHHHHHHHhcccccCCCC---eeEEEEe
Confidence 48999988 66999999999999999987 7765554
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=6e-22 Score=213.38 Aligned_cols=109 Identities=26% Similarity=0.304 Sum_probs=92.0
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC-CeeEEEeccccccccccc-ccEEEEcc
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g-~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
..++||. .+..++.+.+.|...+. .+..+||+++.++|.++++.|++++. ...+|++|+++++|+|++ +++||+++
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~~g~-~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRNRRY-LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTC-CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CEEEEEEccHHHHHHHHHHHHHCCC-CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 3445554 68999999999988877 89999999999999999999999322 235899999999999996 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
. |++++.+.|++||++|.|.. ....+|.+...+
T Consensus 496 ~---------~wnp~~~~Qa~gR~~R~Gq~-~~v~v~~lv~~~ 528 (644)
T 1z3i_X 496 P---------DWNPANDEQAMARVWRDGQK-KTCYIYRLLSTG 528 (644)
T ss_dssp C---------CSSHHHHHHHHTTSSSTTCC-SCEEEEEEEETT
T ss_pred C---------CCCccHHHHHHHhhhhcCCC-CceEEEEEEECC
Confidence 9 78999999999999999986 446777776554
No 56
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.7e-22 Score=218.28 Aligned_cols=285 Identities=16% Similarity=0.127 Sum_probs=188.3
Q ss_pred CCCCCccc-cchHHH--hcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchHHHHHHHHHHHHhC--CCc
Q 010534 60 TDLTRPHT-WYPLAR--KKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLRLLAWEVAKRLNKA--NVS 127 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~--~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r~La~q~~~~l~~~--g~~ 127 (508)
..|+++|. ++..+. ..++++.|+..+||+|||.+++..+. ..+.++|++| ..|+.|+.+.+.++ +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 36788888 665442 23678999999999999999755442 2467899999 67788999998865 567
Q ss_pred eeeecccccc------------------ccCCCcEEEEcceeccc------cCCccEEEEccccccCCCCcChHHHHHHh
Q 010534 128 CDLITGQERE------------------EVDGAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKTRGFSFTRALL 183 (508)
Q Consensus 128 ~~~~~g~~~~------------------~~~~~~~iv~T~e~~~~------l~~~~~iViDEah~~~~~~rg~~~~~~ll 183 (508)
+..++|.... ......++++|++++.. ..++++||+||||++... +.....++.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~ 391 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA--ESSLYESLN 391 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS--SSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc--hhHHHHHHH
Confidence 7777775421 12245688999977643 247899999999999743 555566665
Q ss_pred cccCCceEEEccCCcc-h----------------------------------HHHHHHhHc----------------CCc
Q 010534 184 GICANELHLCGDPAAV-P----------------------------------LIQQILQVT----------------GDD 212 (508)
Q Consensus 184 ~l~~~~~~~~~~~~~~-~----------------------------------~~~~l~~~~----------------~~~ 212 (508)
.+.+.. +++.+++++ . .+..+.... +..
T Consensus 392 ~l~~~~-rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k 470 (800)
T 3mwy_W 392 SFKVAN-RMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSK 470 (800)
T ss_dssp TSEEEE-EEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCE
T ss_pred Hhhhcc-EEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCc
Confidence 554322 222222221 0 011111100 000
Q ss_pred EEEEeeeecCC----------------CCC---------------------------------------C----------
Q 010534 213 VKVQSYERLSP----------------LVP---------------------------------------L---------- 227 (508)
Q Consensus 213 ~~v~~~~~~~~----------------~~~---------------------------------------~---------- 227 (508)
.....+..+.+ +.. .
T Consensus 471 ~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (800)
T 3mwy_W 471 TERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG 550 (800)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHH
Confidence 00000000000 000 0
Q ss_pred ----CCc---c-cccccc--CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCC-CCeeEE
Q 010534 228 ----NVP---L-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVL 295 (508)
Q Consensus 228 ----~~~---l-~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~-g~~~il 295 (508)
... + ..+... ....+|||. ....+..+.+.|...+. .+..+||+++.++|.++++.|++++ +...+|
T Consensus 551 l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~L 629 (800)
T 3mwy_W 551 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI-NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629 (800)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC-CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEE
T ss_pred hhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEE
Confidence 000 0 000111 223455555 58899999999988877 8999999999999999999999832 234699
Q ss_pred Eeccccccccccc-ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 296 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 296 VaT~~~~~Gidip-v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++|.+++.|+|++ +++||+++. |+++..+.|++||++|.|+. ....||.+..++
T Consensus 630 lSt~agg~GlNL~~a~~VI~~D~---------~wnp~~~~Qa~gR~~RiGQ~-k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 630 LSTRAGGLGINLMTADTVVIFDS---------DWNPQADLQAMARAHRIGQK-NHVMVYRLVSKD 684 (800)
T ss_dssp EEHHHHTTTCCCTTCCEEEESSC---------CSCSHHHHHHHTTTSCSSCC-SCEEEEEEEETT
T ss_pred EecccccCCCCccccceEEEecC---------CCChhhHHHHHHHHHhcCCC-ceEEEEEEecCC
Confidence 9999999999996 999999999 77999999999999999986 557777776655
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=9.3e-21 Score=211.07 Aligned_cols=283 Identities=13% Similarity=0.084 Sum_probs=174.0
Q ss_pred CCCCCCccc-cchHHHhc------------CCceEEEEccCCCchHHHHHHHH---Hc---CCCEEEEcchHHHHHHHHH
Q 010534 59 FTDLTRPHT-WYPLARKK------------VRKVILHVGPTNSGKTHQALSRL---ES---SSSGIYCGPLRLLAWEVAK 119 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~------------~~~~~iv~~pTGsGKT~~~~~~l---~~---~~~~i~l~P~r~La~q~~~ 119 (508)
...|+++|. +++.+... .+++.+++++||||||.+++..+ .. ..+++|++|+++|+.|+.+
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 346999999 88877541 24789999999999999964322 22 2478999999999999999
Q ss_pred HHHhCCCceeeeccccc-----c--ccCCCcEEEEcceecc----------ccCCccEEEEccccccCCCCcChHHHHHH
Q 010534 120 RLNKANVSCDLITGQER-----E--EVDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL 182 (508)
Q Consensus 120 ~l~~~g~~~~~~~g~~~-----~--~~~~~~~iv~T~e~~~----------~l~~~~~iViDEah~~~~~~rg~~~~~~l 182 (508)
.+..++... +.|... . ...+..++++|++.+. .+..+.+||+||||+... |..+..+.
T Consensus 349 ~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~ 423 (1038)
T 2w00_A 349 EYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLK 423 (1038)
T ss_dssp HHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHH
T ss_pred HHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHH
Confidence 998875321 112111 1 1235788999986542 245788999999999752 22233333
Q ss_pred hcccCCceEEEccCCcchHH-----HHHHhHcCCc---------------EEEEe-eeecCC----------------CC
Q 010534 183 LGICANELHLCGDPAAVPLI-----QQILQVTGDD---------------VKVQS-YERLSP----------------LV 225 (508)
Q Consensus 183 l~l~~~~~~~~~~~~~~~~~-----~~l~~~~~~~---------------~~v~~-~~~~~~----------------~~ 225 (508)
-.++. ...+..++++.... .......|.. .++.. +....+ ..
T Consensus 424 ~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~ 502 (1038)
T 2w00_A 424 KKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAE 502 (1038)
T ss_dssp HHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTC
T ss_pred HhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHH
Confidence 22332 22222222221100 0111112221 11110 110000 00
Q ss_pred CCCC--------c-cccccc----c--------CCCCEEEEe-eHHHHHHHHHHHHhcC-----------CCeE-EEEcC
Q 010534 226 PLNV--------P-LGSFSN----I--------QTGDCIVTF-SRHAIYRLKKAIESRG-----------KHLC-SIVYG 271 (508)
Q Consensus 226 ~~~~--------~-l~~l~~----~--------~~~~~iv~~-s~~~~~~l~~~L~~~~-----------~~~v-~~lhg 271 (508)
.... . +..+.+ . ..+..+||+ |+..|..+++.|.+.+ ..++ .++||
T Consensus 503 ~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 503 NQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp STTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 0000 0 011101 0 123456666 8999999999997754 1245 45554
Q ss_pred C----------C----------CHH-----------------------------HHHHHHHHhcCCCCCeeEEEeccccc
Q 010534 272 S----------L----------PPE-----------------------------TRTRQATRFNDASSEFDVLVASDAIG 302 (508)
Q Consensus 272 ~----------l----------~~~-----------------------------~R~~~~~~f~~~~g~~~ilVaT~~~~ 302 (508)
+ + ++. .|..+.++|++ |+.+|||+|+++.
T Consensus 583 ~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~--g~i~ILIvvd~ll 660 (1038)
T 2w00_A 583 AANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN--QDIDLLIVVGMFL 660 (1038)
T ss_dssp CC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT--TSSSEEEESSTTS
T ss_pred CCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc--CCCeEEEEcchHH
Confidence 2 2 221 37888999999 9999999999999
Q ss_pred ccccccccEEEEcccccccCcccccCChhhHHhhhccCCCCCCC-CCcEEEEEecCC
Q 010534 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSE 358 (508)
Q Consensus 303 ~Gidipv~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~-~~~G~~~~~~~~ 358 (508)
+|+|+|.-.|++++. |.+...|+|++||+||.+++ +..|.++.+...
T Consensus 661 tGfDiP~l~tlylDk---------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 661 TGFDAPTLNTLFVDK---------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SSCCCTTEEEEEEES---------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred hCcCcccccEEEEcc---------CCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 999998337888876 77899999999999999875 567999888754
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=3.7e-19 Score=191.56 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=96.5
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+.++||+ |++.++.+++.|.+.+. .+..+||++++.+|.++++.|++ |+.+|||||+++++|+|+| ++.||+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGI-RARYLHHELDAFKRQALIRDLRL--GHYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-CceeecCCCCHHHHHHHHHHhhc--CCceEEEccChhhcCccCCCCCEEEEeC
Confidence 34556665 89999999999999877 89999999999999999999999 9999999999999999997 99999998
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCCH
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~~ 360 (508)
..+|.- |.+..+|+||+|||||.+. |.|+.+.+...
T Consensus 516 ~d~~G~----p~s~~~~iQr~GRagR~~~----G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEGF----LRSERSLIQTIGRAARNAR----GEVWLYADRVS 551 (664)
T ss_dssp TTSCSG----GGSHHHHHHHHGGGTTSTT----CEEEEECSSCC
T ss_pred CcccCC----CCCHHHHHHHHCccCcCCC----CEEEEEEcCCC
Confidence 755421 5689999999999999975 88888876643
No 59
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.82 E-value=9.3e-21 Score=175.49 Aligned_cols=108 Identities=21% Similarity=0.331 Sum_probs=97.6
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE
Q 010534 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
...+.++||+ +++.++.+++.|...+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDLSQGERERVLGAFRQ--GEVRVLVATDVAARGLDIPQVDLVVH 105 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTC-CEEEECSSSCHHHHHHHHHHHHS--SSCCEEEECTTTTCSSSCCCBSEEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHC--CCCeEEEecChhhcCCCCccCcEEEE
Confidence 3567777777 89999999999998876 89999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++. |.+..+|.||+|||||.|.. |.|+.+++..
T Consensus 106 ~~~---------p~~~~~~~qr~GR~gR~g~~---g~~~~l~~~~ 138 (212)
T 3eaq_A 106 YRL---------PDRAEAYQHRSGRTGRAGRG---GRVVLLYGPR 138 (212)
T ss_dssp SSC---------CSSHHHHHHHHTTBCCCC-----BEEEEEECGG
T ss_pred CCC---------CcCHHHHHHHhcccCCCCCC---CeEEEEEchh
Confidence 999 66999999999999999977 9998887654
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=172.73 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=118.6
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------------cCCCEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------------SSSSGI 105 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------------~~~~~i 105 (508)
.+++.+.+.+.+. |+..|+++|. +++.+ ++++++++.+|||||||++++.++. .+++++
T Consensus 26 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~l 98 (228)
T 3iuy_A 26 QQYPDLLKSIIRV-----GILKPTPIQSQAWPII--LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGML 98 (228)
T ss_dssp TTCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEE
T ss_pred ccCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEE
Confidence 4788999999998 9999999999 99988 4689999999999999999755432 345789
Q ss_pred EEcchHHHHHHHHHHHHhC---CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccc
Q 010534 106 YCGPLRLLAWEVAKRLNKA---NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (508)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~---g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~ 168 (508)
|++|+++|+.|++++++++ +..+..++|+.... ..+..++++|++.+. .+.+++++|+||||+
T Consensus 99 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 99 VLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 178 (228)
T ss_dssp EECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH
T ss_pred EEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH
Confidence 9999999999999999874 67777777765433 235689999997653 257899999999999
Q ss_pred cCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhH
Q 010534 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (508)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~ 208 (508)
+.+..++..+..++..+......+..+++..+.+..+...
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~ 218 (228)
T 3iuy_A 179 MLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS 218 (228)
T ss_dssp HHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHT
T ss_pred HhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHH
Confidence 9866444455555555544433333343334445555543
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=8.9e-20 Score=161.73 Aligned_cols=109 Identities=24% Similarity=0.433 Sum_probs=98.3
Q ss_pred ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEE
Q 010534 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (508)
Q Consensus 236 ~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI 313 (508)
....+.++||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||
T Consensus 32 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gld~~~~~~Vi 108 (163)
T 2hjv_A 32 TENPDSCIIFCRTKEHVNQLTDELDDLGY-PCDKIHGGMIQEDRFDVMNEFKR--GEYRYLVATDVAARGIDIENISLVI 108 (163)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECGGGTTTCCCSCCSEEE
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEECChhhcCCchhcCCEEE
Confidence 34556777777 89999999999998876 89999999999999999999999 9999999999999999997 99999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+++. |.+..+|.||+||+||.|.. |.++.+....
T Consensus 109 ~~~~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~ 142 (163)
T 2hjv_A 109 NYDL---------PLEKESYVHRTGRTGRAGNK---GKAISFVTAF 142 (163)
T ss_dssp ESSC---------CSSHHHHHHHTTTSSCTTCC---EEEEEEECGG
T ss_pred EeCC---------CCCHHHHHHhccccCcCCCC---ceEEEEecHH
Confidence 9998 67999999999999999987 8888776544
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.82 E-value=1.2e-19 Score=189.56 Aligned_cols=101 Identities=20% Similarity=0.168 Sum_probs=84.9
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc---------
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN--------- 308 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip--------- 308 (508)
...++||+ |++.++.+++.|.+.+. .+.++||+....+|..+.+.|+. | .|+||||+++||+||+
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi-~~~vLhgkq~~rE~~ii~~ag~~--g--~VtVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGI-PHQVLNAKYHEKEAEIVAKAGQK--G--MVTIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTC-CCEEECSCHHHHHHHHHHHHHST--T--CEEEEETTTTTTCCCCCCTTTTTTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCchHHHHHHHHhCCCC--C--eEEEEcchhhCCcCccCCcchhhcC
Confidence 34566666 89999999999999877 89999999777777767777776 6 5999999999999994
Q ss_pred ccEEEEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEec
Q 010534 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (508)
Q Consensus 309 v~~VI~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~ 356 (508)
..+||+++. |.+...|.||+||+||.|.. |.++.+.
T Consensus 549 glhVInte~---------Pes~r~y~qriGRTGRqG~~---G~a~~fv 584 (822)
T 3jux_A 549 GLCIIGTER---------HESRRIDNQLRGRAGRQGDP---GESIFFL 584 (822)
T ss_dssp SCEEEESSC---------CSSHHHHHHHHTTSSCSSCC---CEEEEEE
T ss_pred CCEEEecCC---------CCCHHHHHHhhCccccCCCC---eeEEEEe
Confidence 349999998 66999999999999999987 7765444
No 63
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=161.17 Aligned_cols=129 Identities=22% Similarity=0.355 Sum_probs=99.8
Q ss_pred ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEE
Q 010534 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (508)
Q Consensus 236 ~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI 313 (508)
....+.++||+ +++.++.+++.|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~Gid~~~~~~Vi 107 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDGH-QVSLLSGELTVEQRASIIQRFRD--GKEKVLITTNVCARGIDVKQVTIVV 107 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECSSCCHHHHHHHHHHHHT--TSCSEEEECCSCCTTTCCTTEEEEE
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEecchhcCCCcccCCEEE
Confidence 33455667776 89999999999998876 89999999999999999999999 9999999999999999997 99999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC-HH---HHHhhhcCCCch
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LP---LLHKSLLEPSPM 373 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~-~~---~~~~~~~~~~~~ 373 (508)
+++.+.+.+. ..+..+|+||+|||||.|.. |.++.+...+ .. .+.+.+....++
T Consensus 108 ~~d~p~~~~~---~~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 165 (175)
T 2rb4_A 108 NFDLPVKQGE---EPDYETYLHRIGRTGRFGKK---GLAFNMIEVDELPSLMKIQDHFNSSIKQ 165 (175)
T ss_dssp ESSCCC--CC---SCCHHHHHHHHCBC----CC---EEEEEEECGGGHHHHHHHHHHHTCCCEE
T ss_pred EeCCCCCccc---cCCHHHHHHHhcccccCCCC---ceEEEEEccchHHHHHHHHHHhcCcccc
Confidence 9998422111 16899999999999999977 8888776544 23 333444444443
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.80 E-value=2.2e-19 Score=159.53 Aligned_cols=123 Identities=20% Similarity=0.342 Sum_probs=99.0
Q ss_pred ccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEE
Q 010534 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (508)
Q Consensus 236 ~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI 313 (508)
....+.++||+ +++.++.+++.|++.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||
T Consensus 27 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~G~d~~~~~~Vi 103 (165)
T 1fuk_A 27 SISVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVI 103 (165)
T ss_dssp HTTCSCEEEEESSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEcChhhcCCCcccCCEEE
Confidence 34556777777 89999999999998876 89999999999999999999999 9999999999999999997 99999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC-CHH---HHHhhhcCCCch
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLP---LLHKSLLEPSPM 373 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~-~~~---~~~~~~~~~~~~ 373 (508)
+++. |.+..+|.||+|||||.|.. |.|+.+..+ +.. .+.+++....++
T Consensus 104 ~~~~---------p~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 104 NYDL---------PANKENYIHRIGRGGRFGRK---GVAINFVTNEDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp ESSC---------CSSGGGGGGSSCSCC--------CEEEEEEETTTHHHHHHHHHHSSCCCEE
T ss_pred EeCC---------CCCHHHHHHHhcccccCCCC---ceEEEEEcchHHHHHHHHHHHHccCccc
Confidence 9998 66999999999999999976 787766544 333 344445554443
No 65
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.80 E-value=1.5e-19 Score=171.23 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=121.0
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH------------cCCCEEE
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------------SSSSGIY 106 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~------------~~~~~i~ 106 (508)
.+++.+.+.+.+. |+..|+++|. ++|.+. +++++++++|||||||++++.++. .+++++|
T Consensus 35 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 35 NFPANVMDVIARQ-----NFTEPTAIQAQGWPVAL--SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp TCCHHHHHHHHTT-----TCCSCCHHHHHHHHHHH--HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 4889999999998 9999999999 999985 589999999999999999754443 2457899
Q ss_pred EcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccc
Q 010534 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (508)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~ 168 (508)
++|+++|+.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+. .+.+++++|+||||+
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 187 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR 187 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH
Confidence 999999999999888753 78888888865332 225789999996652 357899999999999
Q ss_pred cCCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc
Q 010534 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 209 (508)
Q Consensus 169 ~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~ 209 (508)
+.+..++..+..++-.+......+..+++..+.+..++...
T Consensus 188 l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 188 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp HHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred HhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 98654444445555444444333333444444555555443
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=166.36 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=120.1
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-----------cCCCEEEEc
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----------SSSSGIYCG 108 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-----------~~~~~i~l~ 108 (508)
+++.+.+.+... ++..|+++|. +++.+ ++++++++.+|||||||++++.++. .+.+++|++
T Consensus 32 l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 32 LSKKTLKGLQEA-----QYRLVTEIQKQTIGLA--LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp CCHHHHHHHHHT-----TCCBCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 789999999988 9999999999 99988 5589999999999999999754432 245789999
Q ss_pred chHHHHHHHHHHHHhC----CCceeeecccccc-----ccCCCcEEEEcceecc---------ccCCccEEEEccccccC
Q 010534 109 PLRLLAWEVAKRLNKA----NVSCDLITGQERE-----EVDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~ 170 (508)
|+++|+.|+++.++++ ++.+..++|+... ...+..++++|++.+. .+.+++++|+||||++.
T Consensus 105 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 105 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHh
Confidence 9999999999999865 4777888886532 2246789999996552 24689999999999998
Q ss_pred CCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc
Q 010534 171 CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 209 (508)
Q Consensus 171 ~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~ 209 (508)
+..++..+..++..+......+..+++..+.+..+....
T Consensus 185 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 185 DMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp HTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred cCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 654444455555555544434444444445566666543
No 67
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=6.5e-20 Score=177.99 Aligned_cols=108 Identities=21% Similarity=0.334 Sum_probs=94.4
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEE
Q 010534 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (508)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~ 314 (508)
..++.++||+ +++.++.+++.|...+. .+..+||+|++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDMSQGERERVMGAFRQ--GEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTC-CEEEECSCCCTHHHHHHHHHHHH--TSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEechhhcCccccceeEEEE
Confidence 3567778777 89999999999988876 89999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 315 ~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++. |.+..+|+||+|||||.|.. |.|+.+++..
T Consensus 103 ~d~---------p~s~~~y~Qr~GRagR~g~~---G~~i~l~~~~ 135 (300)
T 3i32_A 103 YRM---------PDRAEAYQHRSGRTGRAGRG---GRVVLLYGPR 135 (300)
T ss_dssp SSC---------CSSTTHHHHHHTCCC--------CEEEEEECSS
T ss_pred cCC---------CCCHHHHHHHccCcCcCCCC---ceEEEEeChH
Confidence 999 66999999999999999977 8998887655
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=173.92 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=119.4
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-----------cCCCEEEEc
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----------SSSSGIYCG 108 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-----------~~~~~i~l~ 108 (508)
+++.+.+.+... |+..++++|. +++.+.. +++++++||||||||++++.++. .+.+++|++
T Consensus 61 l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~ 133 (262)
T 3ly5_A 61 VNENTLKAIKEM-----GFTNMTEIQHKSIRPLLE--GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILS 133 (262)
T ss_dssp CCHHHHHHHHHT-----TCCBCCHHHHHHHHHHHH--TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred cCHHHHHHHHHC-----CCCCCCHHHHHHHHHHhC--CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEe
Confidence 788999999998 9999999999 9998854 78999999999999999755443 356789999
Q ss_pred chHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc---------ccCCccEEEEcccccc
Q 010534 109 PLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQML 169 (508)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~ 169 (508)
||++|+.|+++.++++ +..+..++|+.... ..+..++|+||+.+. .+.+++++||||||++
T Consensus 134 Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l 213 (262)
T 3ly5_A 134 PTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI 213 (262)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHH
Confidence 9999999999999864 56777777765432 125789999996552 2477999999999999
Q ss_pred CCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHhH
Q 010534 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (508)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~ 208 (508)
.+..++..+..++-.+......+..+++..+.+..+...
T Consensus 214 ~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 214 LDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARI 252 (262)
T ss_dssp HHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHH
Confidence 865444444555544444433333444444555665543
No 69
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=3.4e-19 Score=159.31 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=98.1
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEE
Q 010534 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (508)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~V 312 (508)
.....+.++||+ +++.++.+++.|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~~~~V 103 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKD--FQRRILVATNLFGRGMDIERVNIA 103 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEESSCCSTTCCGGGCSEE
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHC--CCCcEEEECCchhcCcchhhCCEE
Confidence 334556777777 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 313 I~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
|+++. |.+..+|.||+||+||.|.. |.++.+...
T Consensus 104 i~~d~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~ 137 (172)
T 1t5i_A 104 FNYDM---------PEDSDTYLHRVARAGRFGTK---GLAITFVSD 137 (172)
T ss_dssp EESSC---------CSSHHHHHHHHHHHTGGGCC---CEEEEEECS
T ss_pred EEECC---------CCCHHHHHHHhcccccCCCC---cEEEEEEcC
Confidence 99998 67999999999999999987 888777754
No 70
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=5.4e-19 Score=162.89 Aligned_cols=161 Identities=16% Similarity=0.061 Sum_probs=118.1
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+.+. |+..|+++|. +++.+ ++++++++.+|||||||++++.++.. +.+++|++|++
T Consensus 9 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 9 CLKRELLMGIFEM-----GWEKPSPIQEESIPIA--LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CCCHHHHHHHHTT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 3789999999998 9999999999 99988 45899999999999999997655532 34789999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (508)
+|+.|+++.+.++ +..+...+|+.... ..+..++++|++.+. .+.+++++|+||||++.+.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 161 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh
Confidence 9999999998854 56777777765321 246789999996652 3478999999999999876
Q ss_pred CcChHHHHHHhcccCCceEEEccCCcchHHHHHHh
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 207 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~ 207 (508)
.++..+..++..++.....+..+++..+.+..++.
T Consensus 162 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 162 DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHH
Confidence 44444455554444333333333333344444443
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=168.39 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=120.9
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..++++|. +++.+ ++++++++.+|||||||++++.++.. ..+++|++|++
T Consensus 49 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 49 GVTDVLCEACDQL-----GWTKPTKIQIEAIPLA--LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 4788999999998 9999999999 99988 45899999999999999997655432 24689999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc---------ccCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~ 172 (508)
+|+.|++++++++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||++.+.
T Consensus 122 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 9999999988854 78888888865332 246789999996542 2467999999999998865
Q ss_pred CcChHHHHHHhcccCCceEEEccCCcchHHHHHHhH
Q 010534 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~ 208 (508)
.++..+..++..+......+..+++..+.+..+...
T Consensus 202 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 202 DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp TCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHH
Confidence 444445555555544433344444444555555543
No 72
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=162.37 Aligned_cols=106 Identities=22% Similarity=0.317 Sum_probs=93.0
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEc
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~ 315 (508)
.++.++||+ +++.++.+++.|+..+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~ 129 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGV-EAVAIHGGKDQEERTKAIEAFRE--GKKDVLVATDVASKGLDFPAIQHVINY 129 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHH--TSCSEEEECHHHHTTCCCCCCSEEEES
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEcCchhcCCCcccCCEEEEe
Confidence 345677776 89999999999998876 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 316 ~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
+. |.+..+|.||+||+||.|.. |.++.+...
T Consensus 130 d~---------p~~~~~~~qr~GR~gR~g~~---g~~i~l~~~ 160 (191)
T 2p6n_A 130 DM---------PEEIENYVHRIGRTGCSGNT---GIATTFINK 160 (191)
T ss_dssp SC---------CSSHHHHHHHHTTSCC---C---CEEEEEECT
T ss_pred CC---------CCCHHHHHHHhCccccCCCC---cEEEEEEcC
Confidence 98 66999999999999999987 787777653
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.78 E-value=9.5e-19 Score=170.80 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=117.4
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+... ||..|+++|. ++|.+....++++++++|||||||++++.+++. ..+++|++|||
T Consensus 98 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptr 172 (300)
T 3fmo_B 98 RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (300)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcH
Confidence 4889999999998 9999999999 999985433499999999999999998655542 23689999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc---cCCCcEEEEcceecc---------ccCCccEEEEccccccCCCCc
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~r 174 (508)
+||.|+++.+..+ ++.+....|+.... ..+..++|+||+.+. .+.+++++||||||++.+. .
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~-~ 251 (300)
T 3fmo_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT-Q 251 (300)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHS-T
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhc-c
Confidence 9999999988854 45666776654322 235679999996541 2478999999999998752 2
Q ss_pred ChH-HHHHHhcccCCceE-EEccCCcchHHHHHHhHc
Q 010534 175 GFS-FTRALLGICANELH-LCGDPAAVPLIQQILQVT 209 (508)
Q Consensus 175 g~~-~~~~ll~l~~~~~~-~~~~~~~~~~~~~l~~~~ 209 (508)
|+. ....++.......+ ++.+++..+.+..++...
T Consensus 252 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 433 23334443333344 444444445555555443
No 74
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.78 E-value=4.6e-18 Score=182.98 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=95.6
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+.++||+ |+..++.+++.|++.+. ++..+||++++.+|.++++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGI-KVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCC-CeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecchhhCCcccCCCCEEEEeC
Confidence 34555555 89999999999999876 89999999999999999999999 9999999999999999997 99999998
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
..+|.- |.+..+|+||+|||||.+. |.|+.+.+..
T Consensus 522 ~d~~G~----p~s~~~~iQr~GRagR~~~----G~~i~~~~~~ 556 (661)
T 2d7d_A 522 ADKEGF----LRSERSLIQTIGRAARNAE----GRVIMYADKI 556 (661)
T ss_dssp TTCCTT----TTSHHHHHHHHHTTTTSTT----CEEEEECSSC
T ss_pred cccccC----CCCHHHHHHHhCcccCCCC----CEEEEEEeCC
Confidence 755431 5689999999999999854 8888887654
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.78 E-value=8.5e-19 Score=161.62 Aligned_cols=162 Identities=19% Similarity=0.117 Sum_probs=118.7
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----------cCCCEEEEcc
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------SSSSGIYCGP 109 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----------~~~~~i~l~P 109 (508)
+++.+.+.+.+. ++..|+++|. +++.+ .+++++++.+|||||||++++.++. .+++++|++|
T Consensus 8 l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 8 LKPEILEALHGR-----GLTTPTPIQAAALPLA--LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 789999999998 9999999999 99988 4589999999999999999755443 2357899999
Q ss_pred hHHHHHHHHHHHHhC--CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCC
Q 010534 110 LRLLAWEVAKRLNKA--NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 110 ~r~La~q~~~~l~~~--g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (508)
+++|+.|++++++++ +..+..++|+.... ..+..++++|++.+. .+.+++++|+||||++.+..
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 160 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG 160 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccc
Confidence 999999999999976 45677777764321 135789999996642 24789999999999987654
Q ss_pred cChHHHHHHhcccCCceEEEccCCcchHHHHHHhHc
Q 010534 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 209 (508)
Q Consensus 174 rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~ 209 (508)
++..+..++..+......+..+++..+.+..+....
T Consensus 161 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 161 FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHH
Confidence 444445554444433333333444444455555543
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.78 E-value=4.7e-19 Score=165.02 Aligned_cols=161 Identities=15% Similarity=0.061 Sum_probs=116.2
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+.+. |+..++++|. +++.+. +++++++.+|||||||++++..+.. +.+++|++|++
T Consensus 10 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 10 PFQPFIIEAIKTL-----RFYKPTEIQERIIPGAL--RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHH--HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 3789999999998 9999999999 999885 4799999999999999997655432 35789999999
Q ss_pred HHHHHHHHHHHhC--------CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEcccccc
Q 010534 112 LLAWEVAKRLNKA--------NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQML 169 (508)
Q Consensus 112 ~La~q~~~~l~~~--------g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~ 169 (508)
+|+.|+++.+.++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||.+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 9999999988753 56777777765322 125679999996643 2478999999999999
Q ss_pred CCCCcChHHHHHHhcccCCceEEEccCCcchHHHHHHh
Q 010534 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 207 (508)
Q Consensus 170 ~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~ 207 (508)
.+..++..+..++-.+......+..+++..+.+.+++.
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 200 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLK 200 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHH
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHH
Confidence 86533334445544444333333333333334444443
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.77 E-value=8.4e-19 Score=164.62 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=115.4
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+.+. |+..|+++|. +++.+ .+++++++.+|||||||++++..+.. +++++|++|++
T Consensus 30 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 102 (230)
T 2oxc_A 30 LLSRPVLEGLRAA-----GFERPSPVQLKAIPLG--RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTR 102 (230)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCH
Confidence 3789999999988 9999999999 99988 45899999999999999997544421 35789999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeecccccc-----ccCCCcEEEEcceecc--------ccCCccEEEEccccccCCCC
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQERE-----EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (508)
+|+.|++++++++ ++.+..++|+... ...+..++++|++.+. .+.+++++|+||||++.+..
T Consensus 103 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 182 (230)
T 2oxc_A 103 EIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 182 (230)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCc
Confidence 9999999999864 6778888886432 2246789999997652 24778999999999997642
Q ss_pred -cChHHHHHHhcccCCceEEEccCCc-chHHHHHH
Q 010534 174 -RGFSFTRALLGICANELHLCGDPAA-VPLIQQIL 206 (508)
Q Consensus 174 -rg~~~~~~ll~l~~~~~~~~~~~~~-~~~~~~l~ 206 (508)
++..+..++-.+.. ..++++.+++ .+.+..++
T Consensus 183 ~~~~~~~~i~~~~~~-~~~~l~lSAT~~~~~~~~~ 216 (230)
T 2oxc_A 183 SFQEQINWIYSSLPA-SKQMLAVSATYPEFLANAL 216 (230)
T ss_dssp SSHHHHHHHHHHSCS-SCEEEEEESCCCHHHHHHH
T ss_pred chHHHHHHHHHhCCC-CCeEEEEEeccCHHHHHHH
Confidence 23333344434443 3334433333 33444444
No 78
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.77 E-value=9e-19 Score=158.46 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=82.4
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEcc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~~ 316 (508)
.+.++||+ +++.++.+++.|+..+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS--GKSPILVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-CEEEEC--------CHHHHHHHH--TSSSEEEEEC------CCCSBSEEEESS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEcChhhcCCCcccCCEEEEeC
Confidence 45666666 89999999999998876 89999999999999999999999 9999999999999999996 99999999
Q ss_pred cccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 317 ~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
. |.+..+|.||+||+||.|.. |.|+.+....
T Consensus 123 ~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 153 (185)
T 2jgn_A 123 L---------PSDIEEYVHRIGRTGRVGNL---GLATSFFNER 153 (185)
T ss_dssp C---------CSSHHHHHHHHTTBCCTTSC---EEEEEEECGG
T ss_pred C---------CCCHHHHHHHccccCCCCCC---cEEEEEEchh
Confidence 8 67999999999999999977 8988887644
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=165.57 Aligned_cols=163 Identities=17% Similarity=0.128 Sum_probs=116.3
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH--------cCCCEEEEcch
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE--------SSSSGIYCGPL 110 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~--------~~~~~i~l~P~ 110 (508)
.+++.+.+.+.+. |+..|+++|. +++.+ ++++++++.+|||||||++++.++. .+.+++|++|+
T Consensus 35 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 35 KINSRLLQNILDA-----GFQMPTPIQMQAIPVM--LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 5889999999998 9999999999 99988 4588999999999999999755443 23478999999
Q ss_pred HHHHHHHHHHHHhC----CCceeeecccccc-------ccCCCcEEEEcceecc----------ccCCccEEEEcccccc
Q 010534 111 RLLAWEVAKRLNKA----NVSCDLITGQERE-------EVDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQML 169 (508)
Q Consensus 111 r~La~q~~~~l~~~----g~~~~~~~g~~~~-------~~~~~~~iv~T~e~~~----------~l~~~~~iViDEah~~ 169 (508)
++|+.|+++++.++ +..+..++|+... ...+..++++||+.+. .+.+++++|+||||++
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 108 RELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHh
Confidence 99999999999864 6667666664321 1235679999996652 2478999999999999
Q ss_pred CCCC-cChH--HHHHHhcccCCceEEEccCCc-chHHHHHHhHc
Q 010534 170 GCKT-RGFS--FTRALLGICANELHLCGDPAA-VPLIQQILQVT 209 (508)
Q Consensus 170 ~~~~-rg~~--~~~~ll~l~~~~~~~~~~~~~-~~~~~~l~~~~ 209 (508)
.+.. .|+. +..++..+.....++++.+++ .+.+..+....
T Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp HHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHh
Confidence 7532 2332 233333333334444444444 34555555443
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.77 E-value=1.5e-18 Score=162.06 Aligned_cols=161 Identities=11% Similarity=0.008 Sum_probs=115.3
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH-------cCCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~-------~~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..++++|. +++.+ .+++++++.+|||||||++++.++. .+++++|++|++
T Consensus 20 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 20 ELDENLLRGVFGY-----GFEEPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp TCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCcHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 3789999999988 9999999999 99988 4588999999999999999754443 234789999999
Q ss_pred HHHHHHHHHHHhC----CCceeeeccccccc-----cCCCcEEEEcceecc--------ccCCccEEEEccccccCCCCc
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTR 174 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~r 174 (508)
+|+.|+++.+.++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||++.+..+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 172 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 172 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhh
Confidence 9999999998854 67777777765432 224789999996642 247799999999999876544
Q ss_pred ChHHHHHHhcccCCceEEEc-cCCcchHHHHHHhH
Q 010534 175 GFSFTRALLGICANELHLCG-DPAAVPLIQQILQV 208 (508)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~-~~~~~~~~~~l~~~ 208 (508)
+..+..++..+.. ..++++ +++..+.+..+...
T Consensus 173 ~~~l~~i~~~~~~-~~~~i~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 173 KEQIYQIFTLLPP-TTQVVLLSATMPNDVLEVTTK 206 (224)
T ss_dssp HHHHHHHHHHSCT-TCEEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-cCeEEEEEeecCHHHHHHHHH
Confidence 4444444444433 333443 33333445555543
No 81
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.77 E-value=1.1e-18 Score=164.55 Aligned_cols=161 Identities=9% Similarity=0.018 Sum_probs=114.2
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+... |+..|+++|. +++.+ ++++++++.+|||||||++++.++.. +.+++|++|++
T Consensus 36 ~l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~i--~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 36 NLKESLLRGIYAY-----GFEKPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 3789999999988 9999999999 99988 45889999999999999997655532 35889999999
Q ss_pred HHHHHHHHHHHhC----CCceeeecccccccc-------CCCcEEEEcceecc--------ccCCccEEEEccccccCCC
Q 010534 112 LLAWEVAKRLNKA----NVSCDLITGQEREEV-------DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~~-------~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (508)
+|+.|+++.++++ +..+...+|+..... ....++++||+.+. .+.+++++|+||||.+.+.
T Consensus 109 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 188 (237)
T 3bor_A 109 ELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 188 (237)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc
Confidence 9999999999864 566777777543221 12679999986542 2467999999999998765
Q ss_pred CcChHHHHHHhcccCCceEEEc-cCCcchHHHHHHhH
Q 010534 173 TRGFSFTRALLGICANELHLCG-DPAAVPLIQQILQV 208 (508)
Q Consensus 173 ~rg~~~~~~ll~l~~~~~~~~~-~~~~~~~~~~l~~~ 208 (508)
.++..+..++..+.. ..++++ +++..+.+..++..
T Consensus 189 ~~~~~l~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~ 224 (237)
T 3bor_A 189 GFKDQIYEIFQKLNT-SIQVVLLSATMPTDVLEVTKK 224 (237)
T ss_dssp TCHHHHHHHHHHSCT-TCEEEEECSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCC-CCeEEEEEEecCHHHHHHHHH
Confidence 333334444444443 344444 43334455555543
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.76 E-value=1.7e-18 Score=164.90 Aligned_cols=162 Identities=15% Similarity=0.058 Sum_probs=116.7
Q ss_pred CcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----c------------CCC
Q 010534 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S------------SSS 103 (508)
Q Consensus 41 l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~------------~~~ 103 (508)
+++.+.+.+... |+..|+++|. +++.+ ++++++++.+|||||||++++.++. . +++
T Consensus 30 l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i--~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 30 LDPTIRNNILLA-----SYQRPTPIQKNAIPAI--LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp CCCSTTTTTTTT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 677888888888 9999999999 99988 4589999999999999999754442 1 247
Q ss_pred EEEEcchHHHHHHHHHHHHhC----CCceeeeccccccc------cCCCcEEEEcceecc--------ccCCccEEEEcc
Q 010534 104 GIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDE 165 (508)
Q Consensus 104 ~i~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDE 165 (508)
++|++|+++|+.|++++++++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 899999999999999998854 56677777764322 235789999996653 357889999999
Q ss_pred ccccCCCCcChHHHHHHhc--ccC-CceEEEc-cCCcchHHHHHHhHc
Q 010534 166 IQMLGCKTRGFSFTRALLG--ICA-NELHLCG-DPAAVPLIQQILQVT 209 (508)
Q Consensus 166 ah~~~~~~rg~~~~~~ll~--l~~-~~~~~~~-~~~~~~~~~~l~~~~ 209 (508)
||++.+..++..+..++-. +.. ...++++ +++..+.+..+....
T Consensus 183 ah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 183 ADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 9999866444445555542 222 1333333 434445555665543
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.75 E-value=2e-18 Score=160.78 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=102.5
Q ss_pred cCcHHHHhhcccCCCccccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-------CCCEEEEcchH
Q 010534 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (508)
Q Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-------~~~~i~l~P~r 111 (508)
.+++.+.+.+... ++..|+++|. +++.+. +++++++.+|||||||++++.++.. ..+++|++|++
T Consensus 20 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 20 LLKPELLRAIVDC-----GFEHPSEVQHECIPQAI--LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCCHHHHHHHHHT-----TCCCCCHHHHHHHHHHH--TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 3789999999998 9999999999 999884 5789999999999999998665542 23789999999
Q ss_pred HHHHHHHHHHHhC-----CCceeeeccccccc-------cCCCcEEEEcceecc--------ccCCccEEEEccccccCC
Q 010534 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~ 171 (508)
+|+.|+++.++++ +..+..++|+.... .....++++|++.+. .+.+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 9999999998865 67888888865321 124589999997653 357899999999999874
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.59 E-value=1.7e-19 Score=161.10 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=95.2
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccccc-ccEEEEc
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gidip-v~~VI~~ 315 (508)
..+.++||+ +++.++.+++.|+..+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI-NNCYLEGEMVQGKRNEAIKRLTE--GRVNVLVATDVAARGIDIPDVSHVFNF 105 (170)
Confidence 445566666 89999999999988766 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 316 ~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
+. |.+..+|.||+||+||.|.. |.++.+....
T Consensus 106 ~~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~ 137 (170)
T 2yjt_D 106 DM---------PRSGDTYLHRIGRTARAGRK---GTAISLVEAH 137 (170)
Confidence 98 66999999999999999976 8887776543
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.62 E-value=5.4e-15 Score=157.53 Aligned_cols=109 Identities=18% Similarity=0.062 Sum_probs=86.6
Q ss_pred ccCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHh----CCCc
Q 010534 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (508)
Q Consensus 57 ~~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~----~g~~ 127 (508)
.|+ .++++|. .+|.+ ++|+ +..+.||||||+++..++ +.+.++++++||++||.|.++.+.. +|+.
T Consensus 76 lG~-~Pt~VQ~~~ip~L--lqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs 150 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVL--HEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS 150 (997)
T ss_dssp TCC-CCCHHHHHHHHHH--HTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred hCC-CCcHHHHhhcccc--cCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 477 8999999 99988 5576 899999999999974433 3456789999999999999988774 5999
Q ss_pred eeeeccccccc----cCCCcEEEEcceec------c---------ccC---CccEEEEccccccC
Q 010534 128 CDLITGQEREE----VDGAKHRAVTVEMA------D---------VVS---DYDCAVIDEIQMLG 170 (508)
Q Consensus 128 ~~~~~g~~~~~----~~~~~~iv~T~e~~------~---------~l~---~~~~iViDEah~~~ 170 (508)
+++++|+.... ..+..++++|+..+ + .++ ++.++||||+|.+.
T Consensus 151 v~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 151 VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999875432 22678999998443 1 135 79999999999986
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=141.03 Aligned_cols=112 Identities=20% Similarity=0.111 Sum_probs=82.2
Q ss_pred cCCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----------CCCEEEEcchHHHHHH-HHHHHHhC-
Q 010534 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGPLRLLAWE-VAKRLNKA- 124 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----------~~~~i~l~P~r~La~q-~~~~l~~~- 124 (508)
....|+++|. +++.+. +++++++.+|||+|||++++..+.. .++++|++|+++|+.| +.+.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPAL--EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHh--cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 5668999999 998884 5789999999999999998655532 5689999999999999 66666643
Q ss_pred --CCceeeecccccccc------CCCcEEEEcceecc--------------ccCCccEEEEccccccCC
Q 010534 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD--------------VVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 125 --g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~--------------~l~~~~~iViDEah~~~~ 171 (508)
+..+..++|+..... .+..++++|++.+. .+.++++||+||||++.+
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 677888887654322 24779999997652 257889999999999974
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.58 E-value=2e-15 Score=159.15 Aligned_cols=75 Identities=13% Similarity=-0.008 Sum_probs=55.2
Q ss_pred cCCCCCCccc-cchHHH-h-cCCceEEEEccCCCchHHHHHHHH-HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecc
Q 010534 58 DFTDLTRPHT-WYPLAR-K-KVRKVILHVGPTNSGKTHQALSRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~-~-~~~~~~iv~~pTGsGKT~~~~~~l-~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (508)
++ .+++.|. .+..+. . .+++++++.+|||+|||.+++.+. ...++++|++||++|+.|+.+.+..+++++..+.|
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 56 7889998 543321 1 367899999999999999975544 45678899999999999999999888777766665
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.53 E-value=1.4e-14 Score=140.13 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=89.6
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHH----cC-CCEEEEcchHHHHHHHHHHHHhCCC----cee
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-SSGIYCGPLRLLAWEVAKRLNKANV----SCD 129 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~----~~-~~~i~l~P~r~La~q~~~~l~~~g~----~~~ 129 (508)
..++++|. +++.+.. +++.++++|||||||.+++..+. .+ ++++|++|+++|+.|+.+++.+++. .+.
T Consensus 112 ~~l~~~Q~~ai~~~l~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~ 189 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (282)
T ss_dssp CCCCHHHHHHHHHHHH--HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEE
T ss_pred cCccHHHHHHHHHHHh--cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEE
Confidence 36888899 8887754 56788899999999999754443 23 4899999999999999999997643 445
Q ss_pred eecccccccc---CCCcEEEEcceecc-----ccCCccEEEEccccccCCCCcChHHHHHHhcccC
Q 010534 130 LITGQEREEV---DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 187 (508)
Q Consensus 130 ~~~g~~~~~~---~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~ 187 (508)
.++|+..... .+..++++|++.+. .+.++++||+||||++.. ..+..++..+..
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 5555543322 46789999996542 357899999999999973 244445444433
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.51 E-value=5.8e-14 Score=131.94 Aligned_cols=108 Identities=24% Similarity=0.183 Sum_probs=89.4
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCc-eeeeccccc
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQER 136 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~-~~~~~g~~~ 136 (508)
..+++.|. ++..+ .+++++++++|||+|||++++..+.. +++++|++|+++|+.|+.+.+.++++. +..++|+..
T Consensus 92 ~~l~~~Q~~ai~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 92 ISLRDYQEKALERW--LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp CCCCHHHHHHHHHH--TTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCcCHHHHHHHHHH--HhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 46888999 88876 45677999999999999998766655 568899999999999999999999988 888888765
Q ss_pred cccCCCcEEEEcceeccc-----cCCccEEEEccccccCCC
Q 010534 137 EEVDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCK 172 (508)
Q Consensus 137 ~~~~~~~~iv~T~e~~~~-----l~~~~~iViDEah~~~~~ 172 (508)
. ...++++|++.+.. ..++++|||||||.+.+.
T Consensus 170 ~---~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 170 E---LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp C---CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTT
T ss_pred C---cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCCh
Confidence 3 56889999866532 256999999999999754
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=134.32 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=78.7
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc----CC-----CEEEEcchHHHHHHHHHHHHh-CCCce
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----SS-----SGIYCGPLRLLAWEVAKRLNK-ANVSC 128 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~----~~-----~~i~l~P~r~La~q~~~~l~~-~g~~~ 128 (508)
..++++|+ +++.+. +++++++.||||||||+++...+.+ .+ ++++++|+++|+.|+++++.. ++..+
T Consensus 60 ~p~~~~q~~~i~~i~--~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 60 LPVKKFESEILEAIS--QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp SGGGGGHHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred CChHHHHHHHHHHHh--cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34678888 888884 4899999999999999986544432 22 568889999999999999874 34333
Q ss_pred eeeccc----cccc-cCCCcEEEEcceec-----cccCCccEEEEcccccc
Q 010534 129 DLITGQ----EREE-VDGAKHRAVTVEMA-----DVVSDYDCAVIDEIQML 169 (508)
Q Consensus 129 ~~~~g~----~~~~-~~~~~~iv~T~e~~-----~~l~~~~~iViDEah~~ 169 (508)
+...|. .... ..+..++++|++.+ ..+.+++++|+||||++
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHER 188 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSC
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccC
Confidence 333332 2222 24567999999554 24689999999999986
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.45 E-value=1.3e-13 Score=132.01 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=78.9
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCC-Cee-EEEeccccccccccc-ccEEE
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASS-EFD-VLVASDAIGMGLNLN-ISRII 313 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~lhg~l~~~~R~~~~~~f~~~~g-~~~-ilVaT~~~~~Gidip-v~~VI 313 (508)
...+|||. +...++.+.+.|... +. .+..+||++++++|.++++.|++ + ..+ +|++|+++++|+|++ +++||
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~~g~-~~~~l~G~~~~~~R~~~i~~F~~--~~~~~v~L~st~~~g~Glnl~~a~~VI 188 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKELNT-EVPFLYGELSKKERDDIISKFQN--NPSVKFIVLSVKAGGFGINLTSANRVI 188 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHCS-CCCEECTTSCHHHHHHHHHHHHH--CTTCCEEEEECCTTCCCCCCTTCSEEE
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHhcC--CCCCCEEEEehhhhcCCcCcccCCEEE
Confidence 44566666 689999999999875 55 78999999999999999999998 5 455 899999999999996 99999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCCCCcEEEEEecCCC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~~ 359 (508)
++|. |+++..+.||+||++|.|.. ....+|.+...+
T Consensus 189 ~~d~---------~wnp~~~~Q~~gR~~R~Gq~-~~v~v~~li~~~ 224 (271)
T 1z5z_A 189 HFDR---------WWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 224 (271)
T ss_dssp ECSC---------CSCTTTC---------------CCEEEEEEETT
T ss_pred EECC---------CCChhHHHHHHHhccccCCC-CceEEEEEeeCC
Confidence 9999 78999999999999999986 335566665544
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.03 E-value=2.4e-10 Score=120.72 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCCccc-cchHHH-h-cCCceEEEEccCCCchHHHHHHHH-HcCCCEEEEcchHHHHHHHHHHHHhC----CCceeeec
Q 010534 61 DLTRPHT-WYPLAR-K-KVRKVILHVGPTNSGKTHQALSRL-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLIT 132 (508)
Q Consensus 61 ~~~~~q~-~~~~~~-~-~~~~~~iv~~pTGsGKT~~~~~~l-~~~~~~i~l~P~r~La~q~~~~l~~~----g~~~~~~~ 132 (508)
.+++.|. ....+. . .+++++++.+|||+|||++++.++ ...++++|++||++|+.|+.+.+..+ ++++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 4667777 443321 1 368999999999999999986554 45678899999999999999999865 67777776
Q ss_pred c
Q 010534 133 G 133 (508)
Q Consensus 133 g 133 (508)
|
T Consensus 83 g 83 (551)
T 3crv_A 83 G 83 (551)
T ss_dssp C
T ss_pred c
Confidence 6
No 93
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.28 E-value=1.8e-06 Score=92.81 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=53.2
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH----HHHHcCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~----~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
..+++.|. ++-.+.. .+...+|.||.|||||+++. +.+..+.++++++||...+.++.+++...+.++
T Consensus 188 ~~LN~~Q~~AV~~al~-~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~i 260 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS-QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 260 (646)
T ss_dssp TTCCHHHHHHHHHHHH-CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHHHHHHHHhc-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCce
Confidence 34677787 7776642 35689999999999999853 344567789999999999999999998766543
No 94
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.26 E-value=4.2e-06 Score=89.45 Aligned_cols=68 Identities=18% Similarity=0.352 Sum_probs=52.8
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH---HHH--cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~---~l~--~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
+..+++.|. ++..+ +.+..++|.||+|+|||+.+.. .+. .+.++++++||...+.++.+++.+.|.++
T Consensus 178 ~~~ln~~Q~~av~~~--l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHH--HTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCHHHHHHHHHH--hcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 345777777 77666 3478899999999999998533 333 35688999999999999999998776543
No 95
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=4.3e-06 Score=91.48 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH---HH--cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~---l~--~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
+..+++.|. ++..+ +.+..++|.||.|||||+.+... +. .+.++++++||...+.++.+++.+.|.++
T Consensus 358 ~~~Ln~~Q~~Av~~~--l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHV--LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHH--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred cccCCHHHHHHHHHH--hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 455777787 77666 45778999999999999985332 22 46789999999999999999998776543
No 96
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.22 E-value=4.3e-06 Score=88.98 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCccc-cchHHHhcCCceEEEEccCCCchHHHH---HHHHH-----cCCCEEEEcchHHHHHHHHHHHHh
Q 010534 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLE-----SSSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~---~~~l~-----~~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
++.|. +++.+ +.++++++.|++|||||+.+ +..+. .+.++++++||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~--l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVA--LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHH--HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 56677 88887 46899999999999999773 23333 123788899999999999887653
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.11 E-value=1.2e-05 Score=82.81 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=75.9
Q ss_pred cCCCCCCccc-cchHHHhc---CCceEEEEccCCCchHHHH---HHHHHcCC--CEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 58 DFTDLTRPHT-WYPLARKK---VRKVILHVGPTNSGKTHQA---LSRLESSS--SGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 58 ~~~~~~~~q~-~~~~~~~~---~~~~~iv~~pTGsGKT~~~---~~~l~~~~--~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.+..+++.|. ++..+... ....+++.|+.|||||+.+ ...+...+ .+++++||...+..+.+++ +..+
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~---~~~~ 98 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS---GKEA 98 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH---SSCE
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh---ccch
Confidence 5777887777 66544322 2349999999999999985 33444443 5788899999998888776 3333
Q ss_pred eeeccccccc--cCCCcEEEEcceeccccCCccEEEEccccccCCCCcChHHHHHHhcc--cCCceEEEccCCc
Q 010534 129 DLITGQEREE--VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 198 (508)
Q Consensus 129 ~~~~g~~~~~--~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~l--~~~~~~~~~~~~~ 198 (508)
.-++.-.... .......+. ......+.+++++||||+|++... +...++.. ....+.++|+...
T Consensus 99 ~T~h~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iiiDE~~~~~~~-----~~~~l~~~~~~~~~~~~vGD~~Q 166 (459)
T 3upu_A 99 STIHSILKINPVTYEENVLFE-QKEVPDLAKCRVLICDEVSMYDRK-----LFKILLSTIPPWCTIIGIGDNKQ 166 (459)
T ss_dssp EEHHHHHTEEEEECSSCEEEE-ECSCCCCSSCSEEEESCGGGCCHH-----HHHHHHHHSCTTCEEEEEECTTS
T ss_pred hhHHHHhccCcccccccchhc-ccccccccCCCEEEEECchhCCHH-----HHHHHHHhccCCCEEEEECCHHH
Confidence 3222211100 000011111 112234567999999999987521 22233222 2345666675543
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=1.3e-05 Score=87.54 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH---HHHH--cCCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~---~~l~--~~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
...+++.|. ++..+ +.+..++|.||+|+|||+.+. ..+. .+.++++++||...+.++.+++.+.|+++
T Consensus 354 ~~~Ln~~Q~~Av~~~--l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp SCCCCHHHHHHHHHH--HTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred ccCCCHHHHHHHHHh--ccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 345677777 77666 457889999999999999853 3333 34688999999999999999998777653
No 99
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.96 E-value=1.2e-05 Score=80.78 Aligned_cols=107 Identities=24% Similarity=0.228 Sum_probs=71.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceecccc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l 155 (508)
..+..++.|+.|||||+.+...+. ..+.++++||++++.++.+++.+.|.. .....-+.|.+.+-..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~-~~~~lVlTpT~~aa~~l~~kl~~~~~~------------~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN-FEEDLILVPGRQAAEMIRRRANASGII------------VATKDNVRTVDSFLMN 226 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC-TTTCEEEESCHHHHHHHHHHHTTTSCC------------CCCTTTEEEHHHHHHT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc-cCCeEEEeCCHHHHHHHHHHhhhcCcc------------ccccceEEEeHHhhcC
Confidence 468889999999999998877664 367799999999999999998654221 1112234555443211
Q ss_pred ------CCccEEEEccccccCCCCcChHHHHHHhcccCCceEEEccCCcc
Q 010534 156 ------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199 (508)
Q Consensus 156 ------~~~~~iViDEah~~~~~~rg~~~~~~ll~l~~~~~~~~~~~~~~ 199 (508)
...+++||||+-++.. |.. ...+.......+.++|+....
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~---~~l-~~l~~~~~~~~vilvGD~~Ql 272 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHT---GCV-NFLVEMSLCDIAYVYGDTQQI 272 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCH---HHH-HHHHHHTTCSEEEEEECTTSC
T ss_pred CCCCCCCcCCEEEEeCcccCCH---HHH-HHHHHhCCCCEEEEecCcccc
Confidence 1389999999998742 222 222223445677777776544
No 100
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.86 E-value=1.1e-05 Score=85.97 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc--ccccccccc---ccEE
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN---ISRI 312 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~--~~~~Gidip---v~~V 312 (508)
+|.++++| |.+..+.+++.++. . ... ...+++...|...++.|+ ++--||+||. .+.+|||+| .+.|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~-~--~~~-~~q~~~~~~~~~ll~~f~---~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF-E--HMK-EYRGIDQKELYSMLKKFR---RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS-C--CEE-CCTTCCSHHHHHHHHHHT---TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh-c--chh-ccCCCChhHHHHHHHHhc---cCCcEEEEEecCceeccccCCCCceEEE
Confidence 34444444 44444444444431 1 111 333444567889999998 3346999974 899999994 8899
Q ss_pred EEcccccccCc----------------c-----cccCChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 313 IFSTMKKFDGV----------------E-----LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 313 I~~~~~~~d~~----------------~-----~~p~s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
|..+++.-.++ . ..| ....+.|-+||+=|... ..|.++.+.+.
T Consensus 521 iI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~--D~G~v~llD~R 584 (620)
T 4a15_A 521 ILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAE--DTGACVILDKR 584 (620)
T ss_dssp EESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTT--CCEEEEEECGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCC--ceEEEEEEccc
Confidence 99988753322 0 011 34557899999999876 45887777543
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.85 E-value=6.7e-05 Score=79.04 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHHH---HHH-HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccc
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~---~~l-~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~ 135 (508)
.+++.|. ++..+ ..++.+++.||.|+|||+.+. ..+ ..+.++++++||...+..+.+... .....++.-.
T Consensus 189 ~L~~~Q~~Av~~~--~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~---~~a~Tih~ll 263 (574)
T 3e1s_A 189 GLSEEQASVLDQL--AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTG---RTASTVHRLL 263 (574)
T ss_dssp TCCHHHHHHHHHH--TTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT---SCEEEHHHHT
T ss_pred CCCHHHHHHHHHH--HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhc---ccHHHHHHHH
Confidence 4667777 77666 468999999999999999852 222 345678889999999988877653 2222221111
Q ss_pred ccccCCCcEEEEcceeccccCCccEEEEccccccCCCCcChHHHHHHhc-cc-CCceEEEccCC
Q 010534 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG-IC-ANELHLCGDPA 197 (508)
Q Consensus 136 ~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~rg~~~~~~ll~-l~-~~~~~~~~~~~ 197 (508)
.... . - .. ........++++||||++++... +...++. +. ...+.++|+..
T Consensus 264 ~~~~--~--~-~~-~~~~~~~~~dvlIIDEasml~~~-----~~~~Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 264 GYGP--Q--G-FR-HNHLEPAPYDLLIVDEVSMMGDA-----LMLSLLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp TEET--T--E-ES-CSSSSCCSCSEEEECCGGGCCHH-----HHHHHHTTSCTTCEEEEEECTT
T ss_pred cCCc--c--h-hh-hhhcccccCCEEEEcCccCCCHH-----HHHHHHHhCcCCCEEEEEeccc
Confidence 0000 0 0 00 00112246899999999998532 2333333 33 23456666654
No 102
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.43 E-value=0.00032 Score=63.36 Aligned_cols=85 Identities=14% Similarity=0.232 Sum_probs=45.6
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcce
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (508)
..++..++.||.|||||+.+++.+. .+.+++++.|...--..-.......|+......-. .. .+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~------~~------~~ 93 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVS------AS------KD 93 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECS------SG------GG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecC------CH------HH
Confidence 3478889999999999999876653 35678888887532111001111223221111000 00 13
Q ss_pred eccccC-CccEEEEccccccCC
Q 010534 151 MADVVS-DYDCAVIDEIQMLGC 171 (508)
Q Consensus 151 ~~~~l~-~~~~iViDEah~~~~ 171 (508)
.+.... .+++|+|||+|-+..
T Consensus 94 ~~~~~~~~~dvViIDEaQF~~~ 115 (214)
T 2j9r_A 94 IFKHITEEMDVIAIDEVQFFDG 115 (214)
T ss_dssp GGGGCCSSCCEEEECCGGGSCT
T ss_pred HHHHHhcCCCEEEEECcccCCH
Confidence 333333 599999999999854
No 103
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.18 E-value=0.00018 Score=64.39 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=28.6
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r 111 (508)
.+++..++.||+|||||+.++..+. .+.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3478999999999999999876553 355788888873
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.16 E-value=0.00059 Score=60.64 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r 111 (508)
+++..++.||.|+|||+.+++.+. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 467899999999999999876553 345677777873
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.0011 Score=60.75 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=27.9
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r 111 (508)
..+..+++.||+|+|||+.+++.+. .+.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3578999999999999999876553 345777777643
No 106
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.93 E-value=0.00036 Score=63.62 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHH--HHHHHHHHhCCCceeeeccccccccCCCcEEEEc-
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLA--WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT- 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La--~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T- 148 (508)
.++..++.|+.|||||+.+++.+. .+.+++++.|...-- ..+.. ..|+...... +..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~s---r~G~~~~a~~-------------i~~~ 81 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCT---HDRNTMEALP-------------ACLL 81 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC--------------CEEEE-------------ESSG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHh---hcCCeeEEEe-------------cCCH
Confidence 478999999999999999876654 345788888864211 11111 1222211100 000
Q ss_pred ceeccccCCccEEEEccccccC
Q 010534 149 VEMADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 149 ~e~~~~l~~~~~iViDEah~~~ 170 (508)
.+.+.....+++|+|||+|-+.
T Consensus 82 ~di~~~~~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 82 RDVAQEALGVAVIGIDEGQFFP 103 (234)
T ss_dssp GGGHHHHTTCSEEEESSGGGCT
T ss_pred HHHHHHhccCCEEEEEchhhhh
Confidence 1233344779999999999985
No 107
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.90 E-value=0.002 Score=58.09 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=46.2
Q ss_pred cCCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEc-c
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT-V 149 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T-~ 149 (508)
..+...++.||.|||||+.+++.+. .+.+++++.|...--..........|+.... +.+.. .
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a-------------~~v~~~~ 92 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA-------------INISKAS 92 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEE-------------EEESSGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceee-------------EEeCCHH
Confidence 3578999999999999998765543 3567888888643111111111122221111 11111 1
Q ss_pred eeccc-cCCccEEEEccccccCC
Q 010534 150 EMADV-VSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 150 e~~~~-l~~~~~iViDEah~~~~ 171 (508)
+++.. ..++++|+|||||-+.+
T Consensus 93 di~~~i~~~~dvV~IDEaQFf~~ 115 (219)
T 3e2i_A 93 EIMTHDLTNVDVIGIDEVQFFDD 115 (219)
T ss_dssp GGGGSCCTTCSEEEECCGGGSCT
T ss_pred HHHHHHhcCCCEEEEechhcCCH
Confidence 23332 26789999999999874
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.81 E-value=0.0011 Score=58.46 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCceEEEEccCCCchHHHHH---HHHH-cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~-~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
.++.+++.||+|+|||+.+- ..+. ..+..++..+...+...+...+...... +.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 94 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT----------------------KF 94 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS----------------------HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH----------------------HH
Confidence 37899999999999999962 2232 3443444455555655555444321110 22
Q ss_pred ccccCCccEEEEccccccC
Q 010534 152 ADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 152 ~~~l~~~~~iViDEah~~~ 170 (508)
+..+.+.+++|+||++...
T Consensus 95 ~~~~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSER 113 (180)
T ss_dssp HHHHHTCSEEEEETCSSSC
T ss_pred HHHhcCCCEEEEeCCCCCc
Confidence 2334577999999998643
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.0029 Score=54.00 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+++.||+|+|||+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5789999999999999974
No 110
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.65 E-value=0.0043 Score=56.94 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.++.+++.||+|+|||+.+-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 47889999999999999863
No 111
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.47 E-value=0.0015 Score=58.06 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=46.5
Q ss_pred HhcCCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcch---HHHHHHHHHHHHhCCCceeeeccccccccCCCcEE
Q 010534 73 RKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPL---RLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHR 145 (508)
Q Consensus 73 ~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~---r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~i 145 (508)
....++..++.||.|||||+..++.+ ..+.+++|+-|. |.. ..+..+... ..++. .
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~-~~~A~---------------~ 78 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN-TMEAL---------------P 78 (195)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHH-HSEEE---------------E
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCC-cccce---------------e
Confidence 33458899999999999998876655 345678888776 422 112222210 00000 0
Q ss_pred EEc-ceeccccCCccEEEEcccccc
Q 010534 146 AVT-VEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 146 v~T-~e~~~~l~~~~~iViDEah~~ 169 (508)
+.. .+......++++|+|||||-+
T Consensus 79 ~~~~~d~~~~~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 79 ACLLRDVAQEALGVAVIGIDEGQFF 103 (195)
T ss_dssp ESSGGGGHHHHHTCSEEEESSGGGC
T ss_pred cCCHHHHHHhccCCCEEEEEchhhh
Confidence 111 122223467899999999999
No 112
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.33 E-value=0.0034 Score=56.30 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=15.9
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
+.+++.||+|+|||+.+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999985
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.03 E-value=0.007 Score=58.73 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=41.5
Q ss_pred CceEEEEccCCCchHHHHHH---HHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcceec
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (508)
...+++.||+|+|||+.+-. .+.. +...+++. ...+..+....+..... . ...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~---------~-------------~~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADDFAQAMVEHLKKGTI---------N-------------EFR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHHHHHHHHHHTCH---------H-------------HHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHHHHHHHHHHHHcCcH---------H-------------HHH
Confidence 46899999999999998632 2333 34555553 33344444433332100 0 001
Q ss_pred cccCCccEEEEccccccCC
Q 010534 153 DVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (508)
....+.++++|||+|.+..
T Consensus 94 ~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 94 NMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHHHTCSEEEEECGGGGTT
T ss_pred HHhcCCCEEEEcCcccccC
Confidence 1123468999999999863
No 114
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.72 E-value=0.024 Score=49.37 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
..+.+++.||+|+|||+.+-
T Consensus 42 ~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHH
Confidence 46789999999999999863
No 115
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.65 E-value=0.0073 Score=58.25 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=38.9
Q ss_pred CceEEEEccCCCchHHHHH---HHHH-c-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 77 RKVILHVGPTNSGKTHQAL---SRLE-S-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~---~~l~-~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
++++++.||+|+|||+.+. ..+. . +.+++++ ....+.. .+... .. .|. ..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~-~~~~l~~----~l~~~-~~----~~~-------------~~~~ 208 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL-HFPSFAI----DVKNA-IS----NGS-------------VKEE 208 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE-EHHHHHH----HHHCC-CC---------------------CCT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE-EHHHHHH----HHHHH-hc----cch-------------HHHH
Confidence 6899999999999999852 2333 3 3455554 2223332 23221 00 000 0123
Q ss_pred ccccCCccEEEEcccccc
Q 010534 152 ADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 152 ~~~l~~~~~iViDEah~~ 169 (508)
+..+.+.+++||||++..
T Consensus 209 ~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 209 IDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp THHHHTSSEEEEETCCC-
T ss_pred HHHhcCCCEEEEcCCCCC
Confidence 344567789999999654
No 116
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.62 E-value=0.0073 Score=64.64 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHH---HHcC-----CCEEEEcchHHHHHHHHHHHHh
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LESS-----SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~---l~~~-----~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+..+++.|. ++. ..+..++|.|+.|||||++.... +... .+++++.+|+.++.++.+++.+
T Consensus 7 ~~~Ln~~Q~~av~----~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 7 LDSLNDKQREAVA----APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp HTTCCHHHHHHHT----CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHh----CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 456777777 554 22677899999999999996433 3332 3789999999999999999975
No 117
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.53 E-value=0.039 Score=48.13 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
..+.+++.||+|+|||+.+-
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHH
Confidence 35789999999999999863
No 118
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.29 E-value=0.025 Score=60.06 Aligned_cols=48 Identities=25% Similarity=0.128 Sum_probs=40.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHH-----cCCCEEEEcchHHHHHHHHHHHHh
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~-----~~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+++++++.+|||+|||.+++.++. .+++++|++||++++.|+.+.+..
T Consensus 21 ~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 21 KSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp HSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH
Confidence 589999999999999999754443 257889999999999999988774
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.28 E-value=0.019 Score=56.86 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.8
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.+++.||+|+|||+.+-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 5689999999999999963
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.17 E-value=0.02 Score=58.12 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=41.9
Q ss_pred CceEEEEccCCCchHHHHH---HHHHc---CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcce
Q 010534 77 RKVILHVGPTNSGKTHQAL---SRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~---~~l~~---~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (508)
.+.+++.||+|+|||+.+- ..+.. +...+++. ...+..++...+..... ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~~~~~~~~~~~~~~~~----------------------~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFLNDLVDSMKEGKL----------------------NE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HHHHHHHHHHHHHTTCH----------------------HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHcccH----------------------HH
Confidence 4689999999999999852 22222 33445553 33344444444432100 01
Q ss_pred eccccC-CccEEEEccccccCC
Q 010534 151 MADVVS-DYDCAVIDEIQMLGC 171 (508)
Q Consensus 151 ~~~~l~-~~~~iViDEah~~~~ 171 (508)
...... +.++++|||+|.+..
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSS
T ss_pred HHHHhcCCCCEEEEeCcccccC
Confidence 111223 678999999999874
No 121
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.01 E-value=0.031 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.301 Sum_probs=17.9
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+++.||+|+|||+.+-...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3579999999999999875443
No 122
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.01 E-value=0.052 Score=52.51 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.3
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEE
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIY 106 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~ 106 (508)
.+.+++.||+|+|||+.+-......+..++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 578999999999999987544433333333
No 123
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.92 E-value=0.026 Score=52.87 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+++.||+|+|||+.+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 46789999999999999863
No 124
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.46 E-value=0.088 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.++.+++.||+|+|||+.+-
T Consensus 44 ~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999999863
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.34 E-value=0.042 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=18.0
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
..+.+++.||+|+|||+.+-..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 3578999999999999986433
No 126
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.30 E-value=0.089 Score=51.64 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=21.0
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEE
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIY 106 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~ 106 (508)
.+.+++.||+|+|||+.+-......+..++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 467999999999999987544433333333
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.25 E-value=0.11 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=18.7
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+.+++.||+|+|||+.+-....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 57899999999999998754443
No 128
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.14 E-value=0.034 Score=53.62 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=17.5
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
...+++.||+|+|||+.+-..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 478999999999999986443
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.06 E-value=0.063 Score=52.93 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
..+.+++.||+|+|||+.+-
T Consensus 43 ~~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 46789999999999999963
No 130
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=93.97 E-value=0.12 Score=54.01 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEec--cccccccccc------
Q 010534 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS--DAIGMGLNLN------ 308 (508)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT--~~~~~Gidip------ 308 (508)
.+|.++++| |.+..+.+++. ....+..-..+++.. +..+.|+. ..--||+|| ..+.+|||+|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~~~---~~~~~~~~--~~~~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSSVE---DLYSAISA--NNKVLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCCHH---HHHHHTTS--SSSCEEEEESSCCSCCSSCCEETTEES
T ss_pred CCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCCHH---HHHHHHHh--cCCeEEEEEecceecccccccccCCcc
Confidence 466777777 77777777752 222344333345544 67888864 223699998 6999999998
Q ss_pred ccEEEEcccccccCc--------------cc-cc---C---ChhhHHhhhccCCCCCCCCCcEEEEEecCC
Q 010534 309 ISRIIFSTMKKFDGV--------------EL-RD---L---TVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (508)
Q Consensus 309 v~~VI~~~~~~~d~~--------------~~-~p---~---s~~~~~Qr~GRagR~g~~~~~G~~~~~~~~ 358 (508)
.+.||..+++...++ +. .+ . ....+.|-+||+=|... ..|.++.+.+.
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~--D~G~v~llD~R 531 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVN--DKCNVWLLDKR 531 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTT--CEEEEEEESGG
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCC--ccEEEEEeehh
Confidence 678998887753321 00 11 0 34557899999999875 45888777654
No 131
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.95 E-value=0.031 Score=53.43 Aligned_cols=20 Identities=50% Similarity=0.617 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
....+++.||+|+|||+.+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36789999999999999863
No 132
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.94 E-value=0.12 Score=49.45 Aligned_cols=22 Identities=23% Similarity=-0.002 Sum_probs=17.7
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
....++.||.|+|||+.+....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999865433
No 133
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.77 E-value=0.049 Score=52.08 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=19.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
+++.++|+||||||||+.+......
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHh
Confidence 4678899999999999987665543
No 134
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=93.73 E-value=0.21 Score=49.32 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=64.1
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH-----HHHc-CCCEEEEcchHHHHHHHHHHHHhC----C--Cc
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS-----RLES-SSSGIYCGPLRLLAWEVAKRLNKA----N--VS 127 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~-----~l~~-~~~~i~l~P~r~La~q~~~~l~~~----g--~~ 127 (508)
.+.+.|. ++-.+. .++.+++..+-+.|||+.+.. .+.. +..+++++|++.-|..+.+.+..+ . ..
T Consensus 163 ~L~p~Qk~il~~l~--~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS--SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHH--HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHhhc--cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 6788888 554432 356789999999999998422 1222 336788899999998888776632 1 11
Q ss_pred --eeeeccccccccCCCcEEEEcc--eeccccCCccEEEEccccccCC
Q 010534 128 --CDLITGQEREEVDGAKHRAVTV--EMADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 128 --~~~~~g~~~~~~~~~~~iv~T~--e~~~~l~~~~~iViDEah~~~~ 171 (508)
.............+..+.+.+. ..+. -.+.+++|+||+|...+
T Consensus 241 ~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-G~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAVR-GNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECSHHHHH-TSCCSEEEEESGGGSTT
T ss_pred hhhccCCccEEEeCCCCEEEEEECCCCCcc-CCCCCEEEechhhhcCC
Confidence 1111111112222333333332 1111 25578999999999863
No 135
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.71 E-value=0.051 Score=58.88 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH---HHHc-C----CCEEEEcchHHHHHHHHHHHHh
Q 010534 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 59 ~~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~---~l~~-~----~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+..+++.|. ++.. ....++|.|+.|||||++... ++.. . .+++++..|+.+|.++.+|+.+
T Consensus 9 l~~Ln~~Q~~av~~----~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT----TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp HTTSCHHHHHHHHC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHhC----CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 356777777 5432 356789999999999999643 3332 2 3679999999999999999874
No 136
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.67 E-value=0.044 Score=58.89 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=43.5
Q ss_pred CCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----Hc----CCCEEEEcchHHHHHHHHHHHHh
Q 010534 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES----SSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 62 ~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~----~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
+++.|. ++.. .+..++|.|+.|||||++....+ .+ ..+++++..|+.+|.++.+++.+
T Consensus 3 L~~~Q~~av~~----~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 3 LNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCHHHHHHHHC----CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 556666 4432 36789999999999999964332 22 14678999999999999999974
No 137
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.074 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=20.2
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCC
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSS 102 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~ 102 (508)
.+.+++.||+|+|||+.+-......+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999755444434
No 138
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.54 E-value=0.037 Score=58.47 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=59.1
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~ 138 (508)
.+|.-|+ ++..+........++.|+-|.|||+.+-..+.. .+++++++|+..-+..+.+...+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~~-------------- 240 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGEK-------------- 240 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGGG--------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhCC--------------
Confidence 4566666 666654444567899999999999885322221 246788899998877665543320
Q ss_pred cCCCcEEEEccee-ccccCCccEEEEccccccC
Q 010534 139 VDGAKHRAVTVEM-ADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 139 ~~~~~~iv~T~e~-~~~l~~~~~iViDEah~~~ 170 (508)
+-++.|.. .....+.+++|||||=++.
T Consensus 241 -----i~~~~Pd~~~~~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 241 -----FRFIAPDALLASDEQADWLVVDEAAAIP 268 (671)
T ss_dssp -----CCBCCHHHHHHSCCCCSEEEEETGGGSC
T ss_pred -----eEEeCchhhhhCcccCCEEEEEchhcCC
Confidence 11223322 2344669999999999885
No 139
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.36 E-value=0.15 Score=51.18 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=48.6
Q ss_pred CCceEEEEccCCCchHHHHH---HHH-HcCCCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l-~~~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
.+..++++|++|+|||+.+. ..+ ..+++++++ -+.|.-+.+....+. ..|+++........ +.-++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d------p~~i~- 168 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN------PIEIA- 168 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC------HHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC------HHHHH-
Confidence 36889999999999999952 222 345566555 355555555555554 34655432211100 00000
Q ss_pred ceecccc--CCccEEEEccccccC
Q 010534 149 VEMADVV--SDYDCAVIDEIQMLG 170 (508)
Q Consensus 149 ~e~~~~l--~~~~~iViDEah~~~ 170 (508)
.+.+... ..++++|||++-...
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHhcCCCEEEEECCCCcc
Confidence 0111222 579999999996543
No 140
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.34 E-value=0.11 Score=52.20 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=34.5
Q ss_pred CceEEEEccCCCchHHHHH---HHHHc-CCCEEEE--cchHHHHHHHHHHHH-hCCCcee
Q 010534 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC--GPLRLLAWEVAKRLN-KANVSCD 129 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~---~~l~~-~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~ 129 (508)
...++++|++|+|||+.+. .++.+ +.+++++ =|.|.-+.++...+. ..|+++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 6789999999999999953 23333 4466555 366666665555554 3465543
No 141
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.17 E-value=0.064 Score=61.72 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHHHH----HcC------CCEEEEcchHHHHHHHHHHHHh
Q 010534 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS------SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 60 ~~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~~l----~~~------~~~i~l~P~r~La~q~~~~l~~ 123 (508)
..+++.|. ++- ..+++++|.|..|||||++..+.+ ..+ .+++++.+|+..|.++.+++..
T Consensus 9 ~~~t~eQ~~~i~----~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIV----STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHH----CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh----CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 45677776 543 237899999999999999975443 222 2679999999999999999875
No 142
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.97 E-value=0.27 Score=51.79 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=63.8
Q ss_pred CCCCccc-cchHHHhcCCceEEEEccCCCchHHHHHH----HHH-cC-CCEEEEcchHHHHHHHHHHHHhC----C--Cc
Q 010534 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLE-SS-SSGIYCGPLRLLAWEVAKRLNKA----N--VS 127 (508)
Q Consensus 61 ~~~~~q~-~~~~~~~~~~~~~iv~~pTGsGKT~~~~~----~l~-~~-~~~i~l~P~r~La~q~~~~l~~~----g--~~ 127 (508)
.+.+.|. ++-.+ ...+.+++.++-|+|||+.+.. .+. .. .+++++.|++..|.++.+.++.. . +.
T Consensus 163 ~l~p~Q~~i~~~l--~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKIM--SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHHH--HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHhh--ccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 4778888 55443 2357789999999999998422 222 22 36788899999999988877632 1 11
Q ss_pred eee--eccccccccCCCcEEEEcc--eeccccCCccEEEEccccccCC
Q 010534 128 CDL--ITGQEREEVDGAKHRAVTV--EMADVVSDYDCAVIDEIQMLGC 171 (508)
Q Consensus 128 ~~~--~~g~~~~~~~~~~~iv~T~--e~~~~l~~~~~iViDEah~~~~ 171 (508)
... .+........+..+.+.+. ..+.. .+.+++|+||+|...+
T Consensus 241 ~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG-~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAVRG-NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECCHHHHHH-SCCSEEEEETGGGCTT
T ss_pred cccccCCccEEEecCCCEEEEEeCCCCCccC-CCcceEEEehhccCCc
Confidence 111 1111111112333332221 11111 3588999999999864
No 143
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.96 E-value=0.072 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=18.8
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
++.++|+||||||||+.+.....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999987765543
No 144
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.96 E-value=0.069 Score=47.40 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.3
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcC
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
..++.+++.||||+|||+.++......
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 358889999999999999887776543
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.93 E-value=0.25 Score=48.57 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=15.6
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
.+++.||+|+|||+.+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 89999999999999963
No 146
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.77 E-value=0.19 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.1
Q ss_pred CCceEEEEccCCCchHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
..+.+++.||+|+|||+.+-....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999998754443
No 147
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.64 E-value=0.24 Score=48.03 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.7
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||.|+|||+.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIY 42 (334)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred eeEEEECCCCchHHHHHH
Confidence 458999999999999864
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.59 E-value=0.34 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.7
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
-..+++.||+|+|||+.+-...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999874433
No 149
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.50 E-value=0.064 Score=46.95 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..++.++++||+|||||+.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35789999999999999985
No 150
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.48 E-value=0.086 Score=50.84 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=16.1
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
+.+++.||+|+|||+.+-...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHH
Confidence 456778889999999875443
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.47 E-value=0.16 Score=48.36 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=44.5
Q ss_pred CCceEEEEccCCCchHHHHH---HHHH-cCC-CEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSS-SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAV 147 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~-~~~-~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~ 147 (508)
+++.++++||+|+|||+.+. ..+. ..| +++++ -|.+..+.++...+. ..|+++..... . .. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~--~-----~~-l-- 173 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT--K-----EE-F-- 173 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS--H-----HH-H--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC--H-----HH-H--
Confidence 47899999999999999852 2232 244 66555 344544444444333 34544321100 0 00 0
Q ss_pred cceeccccCCccEEEEcccccc
Q 010534 148 TVEMADVVSDYDCAVIDEIQML 169 (508)
Q Consensus 148 T~e~~~~l~~~~~iViDEah~~ 169 (508)
...+..+.+++++|+|.+-..
T Consensus 174 -~~al~~~~~~dlvIiDT~G~~ 194 (296)
T 2px0_A 174 -QQAKELFSEYDHVFVDTAGRN 194 (296)
T ss_dssp -HHHHHHGGGSSEEEEECCCCC
T ss_pred -HHHHHHhcCCCEEEEeCCCCC
Confidence 011223478999999965443
No 152
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.37 E-value=0.1 Score=51.19 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.6
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||+|+|||+.+-
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999999863
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.04 E-value=0.14 Score=46.97 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=34.3
Q ss_pred CCceEEEEccCCCchHHHHHHHH----HcCCCEEEEcchHHHHHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l~P~r~La~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|+|||+.+.+.+ ..+++++|+.-. .-..++.+++...|..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-~~~~~~~~~~~~~g~~ 76 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-EHPVQVRQNMAQFGWD 76 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-SCHHHHHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHHHHcCCC
Confidence 48899999999999999976554 245677777321 1235566666655543
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.00 E-value=0.15 Score=49.59 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=14.3
Q ss_pred EEEEccCCCchHHHH
Q 010534 80 ILHVGPTNSGKTHQA 94 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~ 94 (508)
+++.||+|+|||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999996
No 155
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.82 E-value=0.08 Score=44.49 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=17.6
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.++++.||+|+|||+.|-
T Consensus 23 ~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 57789999999999999863
No 156
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.77 E-value=0.13 Score=49.06 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=18.5
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+.++|+||||||||+.+.....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 46788999999999988765544
No 157
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.59 E-value=0.24 Score=42.81 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.5
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.++.++++|+.|||||+.+-...
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999874433
No 158
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.37 E-value=0.098 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=18.4
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
.++.++++||+|||||+.+-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 4788999999999999986433
No 159
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.31 E-value=0.085 Score=44.20 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+++.||+|+|||+.|-
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 46789999999999998763
No 160
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.17 E-value=0.11 Score=45.35 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=28.8
Q ss_pred EEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHH
Q 010534 80 ILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~ 122 (508)
++|.|++|||||+-|.+....+.+++|+..-...-.++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHH
Confidence 6899999999999998877665578898664444445555554
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.14 E-value=0.1 Score=45.71 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3678999999999999986
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.88 E-value=0.11 Score=48.59 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..+.++||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 46889999999999999984
No 163
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.74 E-value=0.17 Score=46.46 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc-----CCCEEEEcchHHHHHHHHHHHHhCCC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLNKANV 126 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~-----~~~~i~l~P~r~La~q~~~~l~~~g~ 126 (508)
.+..+++.|++|+|||..+++.+.+ ++.++|+.- -.-..++.+++...+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~-E~~~~~~~~~~~~~~~ 83 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL-EERARDLRREMASFGW 83 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES-SSCHHHHHHHHHTTTC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc-cCCHHHHHHHHHHcCC
Confidence 4789999999999999998775532 346666632 1224455666665443
No 164
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.71 E-value=0.12 Score=45.15 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.2
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+.+++.|++|||||+++-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56899999999999998743
No 165
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.54 E-value=0.13 Score=45.67 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||+|||||+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5788999999999999975
No 166
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.49 E-value=0.13 Score=45.62 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.6
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
+++.+++.|++|||||+.+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999999963
No 167
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.47 E-value=0.13 Score=45.14 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
.++..+++.||.|||||+.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999975
No 168
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.36 E-value=0.19 Score=59.65 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=47.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcc--
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (508)
.++++++.||+|+|||+.+.+.+. .+++++|+...-.+.... .+.+|+++.- +.+..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~-------------l~v~~~~~ 1489 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN-------------LLCSQPDT 1489 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTT-------------CEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchh-------------ceeecCCh
Confidence 489999999999999999865543 456788885442222222 3344543221 122222
Q ss_pred -e----ecccc---CCccEEEEccccccC
Q 010534 150 -E----MADVV---SDYDCAVIDEIQMLG 170 (508)
Q Consensus 150 -e----~~~~l---~~~~~iViDEah~~~ 170 (508)
| .+..+ ..+++|||||+.-+.
T Consensus 1490 ~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1490 GEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1 11222 679999999997443
No 169
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.34 E-value=0.25 Score=47.72 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----------CCCEEEEcchHHH-HHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGPLRLL-AWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----------~~~~i~l~P~r~L-a~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|+|||+.+++.+.. +++++|+.-...+ ..++..++..+|..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~ 168 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLD 168 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4789999999999999998776643 3467777322111 23444445555543
No 170
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.32 E-value=0.18 Score=44.79 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.7
Q ss_pred cCCceEEEEccCCCchHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~ 96 (508)
++++.++++||+|+|||+.+-.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHH
Confidence 4689999999999999997543
No 171
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.28 E-value=0.2 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=17.7
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+.++++||||||||+.+....
T Consensus 5 ~~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999765443
No 172
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.14 E-value=0.14 Score=52.90 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+.+++++||||||||+..
T Consensus 259 ~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999974
No 173
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.14 E-value=0.15 Score=45.29 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..+++.||+|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999985
No 174
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.99 E-value=0.15 Score=44.77 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..+++.|++|||||+++-.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 357799999999999999743
No 175
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.97 E-value=0.25 Score=42.22 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=19.2
Q ss_pred ceEEEEccCCCchHHHHHHHHHcCCCE
Q 010534 78 KVILHVGPTNSGKTHQALSRLESSSSG 104 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l~~~~~~ 104 (508)
..+++.|++|||||+++-.. ...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 36889999999999997544 444433
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.96 E-value=0.13 Score=45.75 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+.++||+|||||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999985
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.92 E-value=0.15 Score=46.05 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=18.9
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
+.+++++.||+||||+|++-...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999974433
No 178
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.92 E-value=0.17 Score=46.92 Aligned_cols=18 Identities=50% Similarity=0.597 Sum_probs=15.1
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||||||||+.+-
T Consensus 2 ~li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 367899999999998653
No 179
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.82 E-value=0.16 Score=43.93 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.4
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
++..+.++||+|||||+.+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 588999999999999998653
No 180
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.70 E-value=0.32 Score=44.52 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCceEEEEccCCCchHHHHHHH----H-HcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSR----L-ESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~----l-~~~~~~i~l 107 (508)
.+..+.+.||+|||||+.+... + ...+.++++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 5899999999999999986322 2 445566665
No 181
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.69 E-value=0.24 Score=57.94 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=55.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEccee
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (508)
+++.+.+.||.|||||+.+++.+. .++.++|+.+--+|.... ++.+|+.+.- +++.-|+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~-------------l~~~~p~~ 1493 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN-------------LLCSQPDT 1493 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG-------------CEEECCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH-------------eEEeCCCc
Confidence 479999999999999999887774 467889997766655554 5566766432 34444422
Q ss_pred ----------ccccCCccEEEEccccccC
Q 010534 152 ----------ADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 152 ----------~~~l~~~~~iViDEah~~~ 170 (508)
+-.-..+++||||.+-.+.
T Consensus 1494 ~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1494 GEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 1112679999999998775
No 182
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.54 E-value=0.16 Score=45.26 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.++.++++||+|||||+.+-
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 47889999999999999753
No 183
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.46 E-value=0.16 Score=44.63 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.5
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
++.+.+.||+|||||+.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356889999999999985
No 184
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.39 E-value=0.18 Score=43.88 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.3
Q ss_pred cCCceEEEEccCCCchHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~ 96 (508)
++.+.+++.|++|||||+++-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 3467899999999999998643
No 185
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.24 E-value=0.26 Score=47.69 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=17.3
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
..++|+||||||||+.+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 578999999999999765443
No 186
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.22 E-value=0.22 Score=50.17 Aligned_cols=87 Identities=24% Similarity=0.196 Sum_probs=44.6
Q ss_pred ceEEEEccCCCchHHHHHHH---H-HcCCCEEEE--cchHHHHHHHHHHH-HhCCCceeeeccccccccCCCcEEEEcce
Q 010534 78 KVILHVGPTNSGKTHQALSR---L-ESSSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTVE 150 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~---l-~~~~~~i~l--~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (508)
.+++++|++|+|||+.+... + ..+.+++++ =|.|..+.++...+ ...|+++....|..... ..+ ..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp---~~i---~~~ 173 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSP---VDI---VKE 173 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSS---STT---HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCH---HHH---HHH
Confidence 58899999999999985322 2 234566666 23333222222222 23455443322111100 000 012
Q ss_pred eccccCCccEEEEccccccC
Q 010534 151 MADVVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 151 ~~~~l~~~~~iViDEah~~~ 170 (508)
.+..+..++++|||.+-...
T Consensus 174 ~l~~~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 174 GMEKFKKADVLIIDTAGRHK 193 (432)
T ss_dssp HHHTTSSCSEEEEECCCSCS
T ss_pred HHHHhhCCCEEEEcCCCCcc
Confidence 22233789999999997653
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.13 E-value=0.58 Score=44.48 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=23.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCCCEEEEcc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGP 109 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P 109 (508)
.++.+++.||+|+|||+.+-......+...+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 4678999999999999997544444444444433
No 188
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.09 E-value=0.72 Score=44.00 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=44.6
Q ss_pred CCceEEEEccCCCchHHHHH--H-HH-HcCCCEEEE--cchHHHHH-HHHHHHHhCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL--S-RL-ESSSSGIYC--GPLRLLAW-EVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~--~-~l-~~~~~~i~l--~P~r~La~-q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
.++.++++||+|+|||+.+. . .+ ..+++++++ =+.|..+. |........|+++.. ... ...+..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~s----~~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVIS--HSE----GADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEEC--CST----TCCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEe--cCC----ccCHHHHHH
Confidence 46789999999999999852 2 22 235566655 24444433 333333344554311 110 000000000
Q ss_pred ceec-cccCCccEEEEccccc
Q 010534 149 VEMA-DVVSDYDCAVIDEIQM 168 (508)
Q Consensus 149 ~e~~-~~l~~~~~iViDEah~ 168 (508)
..+. ....+++++|+||+-.
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 0011 1236789999999864
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.06 E-value=0.2 Score=43.20 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+++.|+.|||||+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4788999999999999985
No 190
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.99 E-value=0.21 Score=43.76 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
++..+++.|++|||||+++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999999863
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.96 E-value=0.35 Score=43.29 Aligned_cols=32 Identities=31% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHH-cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE-SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~-~~~~~i~l 107 (508)
.+..+++.||+|+|||+.+.+... .+++++|+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i 51 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYV 51 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 478999999999999999755443 44566776
No 192
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.96 E-value=0.2 Score=43.31 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=17.2
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+++.|+.|||||+++-...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 568999999999999874433
No 193
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.90 E-value=0.18 Score=44.03 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=17.6
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..+++.|+.|||||+++-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356899999999999999643
No 194
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.81 E-value=0.21 Score=45.53 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=18.5
Q ss_pred hHHHhcCCceEEEEccCCCchHHHHHH
Q 010534 70 PLARKKVRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 70 ~~~~~~~~~~~iv~~pTGsGKT~~~~~ 96 (508)
|..+......+++.|++|||||+++-.
T Consensus 9 p~~~~~~~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 9 PVPESPKGVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp -----CCCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 433334567899999999999999743
No 195
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.74 E-value=0.19 Score=43.17 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+++.||.|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999986
No 196
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.65 E-value=0.22 Score=44.16 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+++.||.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4789999999999999985
No 197
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.65 E-value=0.25 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=17.3
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+.++|+||||||||+.+....
T Consensus 2 ~~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHH
Confidence 3578899999999998765433
No 198
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.60 E-value=0.21 Score=42.84 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.5
Q ss_pred eEEEEccCCCchHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALS 96 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~ 96 (508)
.+++.|+.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999998643
No 199
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.45 E-value=0.4 Score=43.63 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.4
Q ss_pred CCceEEEEccCCCchHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+..+.+.||+|+|||+.+.+.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999765554
No 200
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.38 E-value=0.24 Score=43.43 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+++.|+.|||||+++-
T Consensus 4 ~~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35789999999999999863
No 201
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.38 E-value=0.33 Score=48.64 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..+++.||||||||+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHH
Confidence 46788999999999999984
No 202
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.34 E-value=0.24 Score=44.05 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4678999999999999986
No 203
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.30 E-value=0.2 Score=49.23 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.++++||||||||+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEEEEESSSSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 6899999999999999974
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.30 E-value=0.21 Score=49.22 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..++++||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999984
No 205
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.29 E-value=0.3 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.1
Q ss_pred CCceEEEEccCCCchHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+..+++.||+|+|||+.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999877664
No 206
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.27 E-value=0.22 Score=48.74 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..++++||||||||+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45779999999999999984
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.24 E-value=0.47 Score=42.72 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.6
Q ss_pred CCceEEEEccCCCchHHHHHHHH----HcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l----~~~~~~i~l 107 (508)
.+..+++.||+|+|||+.+.... ..+++++|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999999864333 346677776
No 208
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.23 E-value=0.25 Score=43.87 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
.++..+.+.||.|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35789999999999999985
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.08 E-value=0.75 Score=49.95 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=14.9
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+++.||||+|||+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999986
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.03 E-value=0.3 Score=46.86 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.7
Q ss_pred cchHHHhcCCceEEEEccCCCchHHHH
Q 010534 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 68 ~~~~~~~~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+.+....+.++++.||+|+|||+.+
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344455557889999999999999996
No 211
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=87.97 E-value=0.7 Score=40.18 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=15.1
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
+.+++.|+.|||||+++
T Consensus 2 ~~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999996
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.90 E-value=0.24 Score=44.72 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+.++||+|||||+.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 213
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.89 E-value=0.26 Score=43.25 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=17.8
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
++..+++.|+.|||||+++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999998643
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.75 E-value=0.3 Score=46.62 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.0
Q ss_pred CCceEEEEccCCCchHHHH--HHHHHcCCCEE
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGI 105 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~~~~~~i 105 (508)
+++.+.|+||+|||||+.+ +..+. .|+++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 5899999999999999985 44444 55543
No 215
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.72 E-value=0.71 Score=50.88 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.7
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
..++++++||+|+|||+.+
T Consensus 190 ~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp SCCCCEEEECTTSCHHHHH
T ss_pred CCCceEEEcCCCCCHHHHH
Confidence 4568999999999999985
No 216
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.66 E-value=0.41 Score=42.09 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.5
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
+-++++||+|+|||+.+-..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 458999999999998754433
No 217
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=87.65 E-value=0.26 Score=44.06 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
.++..+.|.||+|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999975
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.52 E-value=0.46 Score=41.49 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
+..+++.||+|||||+.+-.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788999999999998633
No 219
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.45 E-value=0.29 Score=43.66 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
.+++.+.+.||+|||||+.+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999974
No 220
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.33 E-value=0.31 Score=43.13 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
++..+++.|+.|||||+++-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46789999999999999863
No 221
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.32 E-value=0.44 Score=47.95 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=30.0
Q ss_pred cCCceEEEEccCCCchHHHH----HHHHHcCCCEEEEcchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAW 115 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l~P~r~La~ 115 (508)
..+.++++.|+||||||+.+ .+.+..+..++++=|..++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 35789999999999999985 233334556677778777753
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.22 E-value=1 Score=43.46 Aligned_cols=52 Identities=29% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCceEEEEccCCCchHHHH--HHH-H-HcCCCEEEE-cch-HHHHHHHHHHH-HhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSR-L-ESSSSGIYC-GPL-RLLAWEVAKRL-NKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~-l-~~~~~~i~l-~P~-r~La~q~~~~l-~~~g~~ 127 (508)
++..+.++||+|||||+.+ +.. + ..++++.+. .++ +.-+.++...+ ...|+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCce
Confidence 5789999999999999984 222 2 235566554 332 33333333333 345544
No 223
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.20 E-value=0.28 Score=43.94 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=16.9
Q ss_pred eEEEEccCCCchHHHHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~ 99 (508)
++++.||+||||+|++-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999855443
No 224
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.17 E-value=0.39 Score=46.92 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.8
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEcc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGP 109 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~P 109 (508)
.+..++|.||+|||||+.+++.+. .+++++|+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 478999999999999999766553 3567888844
No 225
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.05 E-value=0.31 Score=43.47 Aligned_cols=19 Identities=47% Similarity=0.303 Sum_probs=16.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+.+.||+|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4678899999999999985
No 226
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.04 E-value=0.21 Score=45.46 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=13.3
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+.+.||+|||||+.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999985
No 227
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.86 E-value=0.31 Score=41.73 Aligned_cols=19 Identities=26% Similarity=0.330 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
-+++++.|+.|||||+++-
T Consensus 7 ~~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 4789999999999999863
No 228
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.83 E-value=0.51 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=33.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----------CCCEEEEcchHHH-HHHHHHHHHhCCCc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGPLRLL-AWEVAKRLNKANVS 127 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----------~~~~i~l~P~r~L-a~q~~~~l~~~g~~ 127 (508)
.+..+++.||+|||||+.+++.... +++++|+.-...+ ..++..++..+|+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~ 183 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVD 183 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4789999999999999998776643 3467777322211 23344444455543
No 229
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.55 E-value=0.29 Score=47.43 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=17.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+.++||||||||+..
T Consensus 170 ~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCEEEEESTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999963
No 230
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.54 E-value=0.35 Score=43.74 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.++++||.|||||+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5889999999999999974
No 231
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.49 E-value=0.33 Score=46.17 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.7
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
...++++.||+|+|||+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999986
No 232
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=86.44 E-value=0.3 Score=43.31 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
...+++.|+.|||||+.+-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3579999999999999863
No 233
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.40 E-value=0.46 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=19.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+..++++||.|||||+.+-....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998754443
No 234
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.30 E-value=0.34 Score=42.60 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.2
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
...+++.|+.|||||+++-.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56899999999999999743
No 235
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.30 E-value=0.36 Score=44.60 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
..+.+++.||+|+|||+.+-.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357799999999999998643
No 236
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.27 E-value=0.52 Score=39.69 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=18.5
Q ss_pred CceEEEEccCCCchHHH--HHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQ--ALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~--~~~~l~ 99 (508)
....+|.||+|||||+. |+.+++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999998 455544
No 237
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.25 E-value=0.67 Score=43.39 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=18.7
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+.+++.||+|+|||+.+-...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 46789999999999999874443
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.24 E-value=0.38 Score=41.93 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
.++..+++.|+.|||||+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 35788999999999999985
No 239
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.15 E-value=0.39 Score=41.61 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4788999999999999985
No 240
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.13 E-value=0.37 Score=42.84 Aligned_cols=20 Identities=45% Similarity=0.307 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+.+.|++|||||+.+-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46789999999999999763
No 241
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.13 E-value=0.63 Score=42.05 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=18.0
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+++.|++|||||+++-...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999974443
No 242
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.04 E-value=0.38 Score=43.26 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.1
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
+..+++.|+.|||||+++-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999999743
No 243
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.02 E-value=0.36 Score=43.55 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.9
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+.+.||+|||||+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999986
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.95 E-value=0.72 Score=44.93 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=25.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.++.+++.||+|||||+.+++.+. .+++++|+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi 95 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI 95 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 478999999999999999766553 45678887
No 245
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.89 E-value=0.37 Score=44.56 Aligned_cols=19 Identities=47% Similarity=0.588 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.+++.||+|+|||+.+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4569999999999999863
No 246
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.85 E-value=0.36 Score=43.23 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=15.8
Q ss_pred eEEEEccCCCchHHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~ 97 (508)
.+++.||.|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999997443
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.81 E-value=0.41 Score=42.62 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999985
No 248
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.76 E-value=0.28 Score=42.50 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=13.8
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
+...+++.|+.|||||+++-..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999997443
No 249
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.75 E-value=0.73 Score=43.47 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=18.8
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+.+++.||+|+|||+.+-...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 36789999999999999874443
No 250
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.67 E-value=0.42 Score=42.30 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..+++.|+.|||||+++-.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356799999999999999643
No 251
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.58 E-value=0.4 Score=41.82 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.2
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
...+++.|+.|||||+++-..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 357899999999999986433
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.55 E-value=0.6 Score=51.48 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.5
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
..+++.||||+|||+.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999986
No 253
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.53 E-value=0.71 Score=45.71 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=26.3
Q ss_pred CCceEEEEccCCCchHHHHH----HHHHcCCCEEEEcchHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRL 112 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~----~~l~~~~~~i~l~P~r~ 112 (508)
.+.++++.||||||||+.+- +....+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 57889999999999999852 23334566677766543
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.50 E-value=0.82 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=23.2
Q ss_pred CCceEEEEccCCCchHHHH--HHHH--HcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l--~~~~~~i~l 107 (508)
.+..+.++||+|||||+.+ +..+ ..++++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4789999999999999984 2222 245666665
No 255
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.33 E-value=0.37 Score=41.27 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.6
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.|+.|||||+++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999999863
No 256
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.29 E-value=0.79 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.0
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+++.|+.|||||+++-...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999874444
No 257
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.28 E-value=0.39 Score=43.28 Aligned_cols=20 Identities=25% Similarity=0.229 Sum_probs=16.8
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
...+++.|+.|||||+++-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999998643
No 258
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.14 E-value=0.63 Score=41.60 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=17.8
Q ss_pred eEEEEccCCCchHHHHHHHHHcCC
Q 010534 79 VILHVGPTNSGKTHQALSRLESSS 102 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~~~ 102 (508)
.+++.||.|||||+++-......+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999754433333
No 259
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=84.99 E-value=0.71 Score=45.00 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.0
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+..+.+.||+|||||+.+.+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999976554
No 260
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.91 E-value=0.47 Score=41.80 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=18.2
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
+...+.+.|++|||||+++-...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999874433
No 261
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.87 E-value=0.47 Score=42.22 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999985
No 262
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.83 E-value=0.42 Score=41.55 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.9
Q ss_pred ceEEEEccCCCchHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~ 96 (508)
..+++.|+.|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4588999999999998633
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.81 E-value=0.41 Score=41.29 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=15.1
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
++++.|+.|||||+++-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999999863
No 264
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.54 E-value=0.5 Score=42.11 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=17.1
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
++.+++.||.|+|||+.+...
T Consensus 58 kn~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHH
Confidence 456999999999999987443
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.48 E-value=0.9 Score=44.35 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCG 108 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l~ 108 (508)
.++.+++.|++|+|||+.+++.+. .+++++|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999999876553 356788873
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.44 E-value=0.6 Score=42.01 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.0
Q ss_pred CCceEEEEccCCCchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~ 97 (508)
.+..+.+.||+|||||+.+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5899999999999999997444
No 267
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.39 E-value=1.1 Score=41.17 Aligned_cols=18 Identities=56% Similarity=0.724 Sum_probs=15.4
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||+|+|||+.+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 449999999999999863
No 268
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=84.38 E-value=0.91 Score=43.26 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=22.6
Q ss_pred CCceEEEEccCCCchHHHH--HHHHH--cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l~--~~~~~i~l 107 (508)
++..+.++||+|||||+.+ +..+. .++++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4688999999999999985 22222 34566555
No 269
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.34 E-value=0.86 Score=39.35 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.3
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcC
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
..++-+++.|+.|+|||+.++..+..+
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358899999999999999998888653
No 270
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=84.32 E-value=0.49 Score=42.54 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
+..+++.|+.|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999963
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.26 E-value=0.48 Score=41.77 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.8
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
.+++.|+.|||||+++-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 57899999999999863
No 272
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.24 E-value=0.9 Score=44.40 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=17.8
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
....+++.||+|+|||+.|-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 367899999999999998633
No 273
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.23 E-value=0.73 Score=40.82 Aligned_cols=18 Identities=39% Similarity=0.667 Sum_probs=15.6
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
..+++.||+|+|||+.+-
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999999863
No 274
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.15 E-value=0.52 Score=42.08 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..+++.|+.|||||+++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999986
No 275
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=84.09 E-value=0.53 Score=43.22 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
+...+++.||.|||||+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3578999999999999986
No 276
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=84.09 E-value=5.4 Score=38.09 Aligned_cols=103 Identities=11% Similarity=-0.095 Sum_probs=58.6
Q ss_pred CEEEEe-eHHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccccccc-----c-cccEEE
Q 010534 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN-----L-NISRII 313 (508)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~~Gid-----i-pv~~VI 313 (508)
.+++|. ..+..+-+.+.+...+. +..-+.|..... +.+. .+ ....|.+.|...+-|+| + +.+.||
T Consensus 127 kVLIfsq~t~~LDilE~~l~~~~~-~y~RlDG~~~~~-~~k~----~~--~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 127 ETAIVCRPGRTMDLLEALLLGNKV-HIKRYDGHSIKS-AAAA----ND--FSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp EEEEEECSTHHHHHHHHHHTTSSC-EEEESSSCCC------------C--CSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred EEEEEECChhHHHHHHHHHhcCCC-ceEeCCCCchhh-hhhc----cc--CCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 344444 46777777777766655 888888884443 2111 12 45566666777777776 5 699999
Q ss_pred EcccccccCcccccCChhhHHhhhccCCCCCCC-CCcEEEEEecCCC
Q 010534 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSED 359 (508)
Q Consensus 314 ~~~~~~~d~~~~~p~s~~~~~Qr~GRagR~g~~-~~~G~~~~~~~~~ 359 (508)
.+|.. |-+....+|.+-|+.|.|.+ .....||++....
T Consensus 199 ~~Dsd--------wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 199 CLDTT--------VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp ECSTT--------CCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred EECCC--------CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 98873 22333357877777776421 1224567776544
No 277
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.97 E-value=0.51 Score=40.20 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=15.0
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
.+++.|+.|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999999963
No 278
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.93 E-value=0.47 Score=43.87 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
++++.+++.|+.|||||+.+
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34889999999999999985
No 279
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.89 E-value=1 Score=40.45 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
+.+..+++.|+.|||||+++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 56889999999999999986
No 280
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.85 E-value=0.68 Score=40.07 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.9
Q ss_pred CceEEEEccCCCchHHHH--HHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA--LSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~--~~~l~ 99 (508)
....+++||+|||||+.. +..++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999999999983 44443
No 281
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.84 E-value=0.74 Score=43.57 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+.+++.||+|+|||+.+-.
T Consensus 36 p~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46788999999999998643
No 282
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=83.84 E-value=0.49 Score=42.34 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.3
Q ss_pred eEEEEccCCCchHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALS 96 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~ 96 (508)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999743
No 283
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.83 E-value=0.54 Score=43.43 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+..+.+.||+|||||+.+-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999999863
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.73 E-value=0.8 Score=41.99 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.8
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
....+++.||.|||||+++-...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999975444
No 285
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.59 E-value=0.57 Score=42.84 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-..+ ++..+ .+++++..+..+.+.+++ .....-||++|--.+. ..+ ++.|+..
T Consensus 150 q~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~-~d~i~~l 218 (235)
T 3tif_A 150 QQQRVAIARALANNP--PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARF-GERIIYL 218 (235)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTT-SSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHh-CCEEEEE
Confidence 444556677765443 46666 478888888777766654 1112345666644332 233 5666543
No 286
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.51 E-value=0.79 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=18.1
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+.+++.||+|+|||+.|-...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHH
Confidence 5789999999999998764433
No 287
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.49 E-value=0.92 Score=44.29 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=20.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSS 102 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~ 102 (508)
..+.+++.||+|+|||+.+-......+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999998754443333
No 288
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=83.40 E-value=2.7 Score=45.51 Aligned_cols=79 Identities=10% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEecc-cccccccc-cccEEE
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-AIGMGLNL-NISRII 313 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~-~~~~Gidi-pv~~VI 313 (508)
..++++. ++.-+...++.+++.. +.++..+||+++..+|..+.+.+.+ |..+|+|+|. .+...+++ .++.||
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhhhhhccCCceEE
Confidence 3455555 7888888777776542 3489999999999999999999998 8899999997 34445677 488888
Q ss_pred Ecccccc
Q 010534 314 FSTMKKF 320 (508)
Q Consensus 314 ~~~~~~~ 320 (508)
......|
T Consensus 496 IDEaHr~ 502 (780)
T 1gm5_A 496 IDEQHRF 502 (780)
T ss_dssp EESCCCC
T ss_pred ecccchh
Confidence 7666543
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=83.39 E-value=0.48 Score=45.28 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=47.1
Q ss_pred eEEEEccCCCchHHHHHHHHHc------CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccccCCCcEEEEcc---
Q 010534 79 VILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV--- 149 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l~~------~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~--- 149 (508)
.+.+.||.|+|||+.+++.+.+ +++++|+-....+... +++.+|+... .+++..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~d-------------~llv~~~~~~ 93 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDPE-------------RVIHTPVQSL 93 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCGG-------------GEEEEECSBH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCHH-------------HeEEEcCCCH
Confidence 7899999999999998776632 4678888443333221 4556665421 1222222
Q ss_pred -ee-cc--------ccCCccEEEEccccccC
Q 010534 150 -EM-AD--------VVSDYDCAVIDEIQMLG 170 (508)
Q Consensus 150 -e~-~~--------~l~~~~~iViDEah~~~ 170 (508)
+. +. .-..+++||||=+..+.
T Consensus 94 E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 94 EQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 11 11 11468999999999874
No 290
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.31 E-value=0.52 Score=46.01 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.8
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
++.+++.||+|+|||+.+-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999999864
No 291
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.17 E-value=0.72 Score=43.23 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.0
Q ss_pred cCCceEEEEccCCCchHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+..+++.||+|||||+.+.+.+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999975443
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.08 E-value=1.2 Score=43.59 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=23.2
Q ss_pred CCceEEEEccCCCchHHHH--HHHH--HcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l--~~~~~~i~l 107 (508)
.+..+.++||+|||||+.+ +..+ ..++++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 4789999999999999984 2222 245666665
No 293
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.92 E-value=0.62 Score=43.23 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.9
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
...+++.|+.|||||+.+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 467899999999999975
No 294
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.92 E-value=0.59 Score=40.77 Aligned_cols=16 Identities=50% Similarity=0.549 Sum_probs=14.3
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+++.|+.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999986
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=82.84 E-value=0.58 Score=41.39 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=14.4
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+.+.|+.|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5889999999999985
No 296
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.82 E-value=0.64 Score=41.63 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=16.0
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+.+.|+.|||||+++
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999986
No 297
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=82.72 E-value=1.1 Score=40.14 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=20.6
Q ss_pred CCceEEEEccCCCchHHHH---HHHHHcCC
Q 010534 76 VRKVILHVGPTNSGKTHQA---LSRLESSS 102 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~---~~~l~~~~ 102 (508)
++..+++.|+.|||||+++ .+.+...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5788999999999999995 34444444
No 298
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.66 E-value=0.78 Score=40.75 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.3
Q ss_pred eEEEEccCCCchHHHHHHHH
Q 010534 79 VILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~~~l 98 (508)
..++.|+.|||||+.+...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 67899999999999986654
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.61 E-value=0.63 Score=40.51 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.2
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+.+.||.|||||+.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999984
No 300
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.57 E-value=0.61 Score=44.26 Aligned_cols=18 Identities=44% Similarity=0.589 Sum_probs=16.1
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
...+++.||+|+|||+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 357999999999999986
No 301
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=82.53 E-value=0.65 Score=41.16 Aligned_cols=19 Identities=42% Similarity=0.302 Sum_probs=16.7
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.|++|||||+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678999999999999985
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=82.52 E-value=0.61 Score=41.32 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=14.7
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
..+.+.|+.|||||+++
T Consensus 3 ~~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999975
No 303
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=82.39 E-value=0.48 Score=43.77 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+..+++.|++|||||+.+-.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 357899999999999997633
No 304
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=82.38 E-value=0.59 Score=45.95 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~ 96 (508)
....+++.||+|+|||+.+-.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 356899999999999998643
No 305
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=82.37 E-value=1.2 Score=43.60 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.+..++|.||+|+|||+.+++.+. .+++++|+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi 108 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFI 108 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999876553 35678887
No 306
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.35 E-value=1.1 Score=44.13 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.3
Q ss_pred CceEEEEccCCCchHHHHHHHHHc
Q 010534 77 RKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
.+.+++.||+|+|||+.+-.....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999987544433
No 307
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=82.35 E-value=0.59 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.4
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+++.|+.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999996
No 308
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.33 E-value=0.62 Score=42.06 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.9
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
.+++.|+.|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999863
No 309
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.24 E-value=2 Score=50.32 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.+..+++.||+|+|||+.+++... .+++++|+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 578999999999999999866543 34577777
No 310
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.05 E-value=0.62 Score=44.40 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
....+++.||||+|||+.+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 46789999999999999863
No 311
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.04 E-value=1.5 Score=40.89 Aligned_cols=18 Identities=56% Similarity=0.724 Sum_probs=15.4
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||+|+|||+.+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 349999999999999863
No 312
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.01 E-value=0.88 Score=43.67 Aligned_cols=32 Identities=19% Similarity=0.003 Sum_probs=22.6
Q ss_pred ceEEEEccCCCchHHHHHHH--HHcCCCEEEEcc
Q 010534 78 KVILHVGPTNSGKTHQALSR--LESSSSGIYCGP 109 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~--l~~~~~~i~l~P 109 (508)
+.+++.|+.|||||+..-.. ...+.++.++.|
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 57899999999999985322 233446666666
No 313
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=81.98 E-value=0.71 Score=42.22 Aligned_cols=63 Identities=10% Similarity=0.094 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhc---C-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFN---D-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~---~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-..+ ++.++ .+++++..+..+.+.+. . ..| .-||++|--.+. +.. ++.|+..
T Consensus 132 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~-~tviivtH~~~~-~~~-~d~v~~l 201 (237)
T 2cbz_A 132 QKQRVSLARAVYSNA--DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN-KTRILVTHSMSY-LPQ-VDVIIVM 201 (237)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTT-SEEEEECSCSTT-GGG-SSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCC-CEEEEEecChHH-HHh-CCEEEEE
Confidence 455556777776654 46666 48899999988888773 2 123 356666654433 233 5666543
No 314
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.71 E-value=1 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.9
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+-+++.||+|+|||+.|-...
T Consensus 206 prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5779999999999999864433
No 315
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.69 E-value=0.99 Score=40.10 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=20.5
Q ss_pred CCceEEEEccCCCchHHH--HHHHHHcC
Q 010534 76 VRKVILHVGPTNSGKTHQ--ALSRLESS 101 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~--~~~~l~~~ 101 (508)
.....+|.||+|||||+. |+.+++.+
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 357889999999999999 46665544
No 316
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=81.66 E-value=0.79 Score=39.00 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999974
No 317
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.66 E-value=0.73 Score=43.23 Aligned_cols=63 Identities=8% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC---CCCCeeEEEecccccccccccccEEEE
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND---ASSEFDVLVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~---~~g~~~ilVaT~~~~~Gidipv~~VI~ 314 (508)
.+.-..+++.|-..+ ++.++ .+++++..+..+.+.+++ ..| .-||++|--.+.=..+ ++.|+.
T Consensus 148 qkQRv~iAraL~~~P--~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHdl~~~~~~-~drv~~ 216 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEP--KVLILDEPTAGLDPMGVSEIMKLLVEMQKELG-ITIIIATHDIDIVPLY-CDNVFV 216 (275)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHC-CEEEEEESCCSSGGGG-CSEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHHhhCC-CEEEEEecCHHHHHHh-CCEEEE
Confidence 444556666665443 46666 578888888777665543 113 3466666433322222 455543
No 318
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.60 E-value=2.4 Score=40.49 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=24.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.+..+++.|++|+|||+.+++... ++.+++|+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 588999999999999999766543 33466676
No 319
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=81.56 E-value=0.73 Score=43.60 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.6
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+.|.|++|||||+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4577889999999999996
No 320
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.56 E-value=0.89 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=18.5
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+-+++.||+|+|||+.|-....
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 58899999999999998644333
No 321
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.45 E-value=0.97 Score=44.72 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=18.4
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+.+++.||+|+|||+.|-....
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHH
Confidence 57899999999999997644333
No 322
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.40 E-value=1.5 Score=42.07 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCceEEEEccCCCchHHHHH---HHH-HcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l-~~~~~~i~l 107 (508)
.++.+.+.|++|+|||+.+. ..+ ..+++++++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47889999999999999852 122 345677666
No 323
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.37 E-value=0.97 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=19.3
Q ss_pred CCceEEEEccCCCchHHH--HHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQ--ALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~--~~~~l~ 99 (508)
.....++.||||+|||+. |+.++.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999 455533
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.36 E-value=0.76 Score=44.01 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..+.|.||+|||||+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEECCCCchHHHHH
Confidence 35788999999999999995
No 325
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.31 E-value=2.4 Score=43.19 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=44.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhC-CCceeee
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA-NVSCDLI 131 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~-g~~~~~~ 131 (508)
.+....+.|-||||||+.+...+.+ ++..++++|....|.+++..++.+ +..|...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~f 70 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEEC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 3567889999999999987766655 456799999999999999999975 3334433
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=81.29 E-value=0.77 Score=42.10 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+-+.||.|||||+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4678899999999999985
No 327
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.28 E-value=1.4 Score=42.20 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.0
Q ss_pred eEEEEccCCCchHHHH--HHHHH
Q 010534 79 VILHVGPTNSGKTHQA--LSRLE 99 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~--~~~l~ 99 (508)
.+-+.||+|||||+.+ +..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999985 44444
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=81.22 E-value=0.8 Score=41.55 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+.+.|+.|||||+.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4788999999999999975
No 329
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.08 E-value=0.96 Score=40.57 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.8
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||+|+|||+.+-
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478999999999999863
No 330
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.05 E-value=0.71 Score=41.83 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999863
No 331
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.91 E-value=0.43 Score=42.51 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.3
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
.+++.|+.|||||+++
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999986
No 332
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.86 E-value=0.67 Score=44.81 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.5
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
..+++.||+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999985
No 333
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=80.75 E-value=0.85 Score=41.45 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+++.|+.|||||+++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5788999999999999995
No 334
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.68 E-value=0.65 Score=44.31 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.-..+++.|-... ++.++ .+++++..+..+.+.+.+ ..+. -+|+.|--++.-. .++.|+..
T Consensus 195 qrQRvaiARAL~~~p--~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~itH~l~~~~--~aD~i~vl 261 (306)
T 3nh6_A 195 EKQRVAIARTILKAP--GIILLDEATSALDTSNERAIQASLAKVCANR-TTIVVAHRLSTVV--NADQILVI 261 (306)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEEECCSHHHHH--TCSEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEEEcChHHHH--cCCEEEEE
Confidence 555667788776654 46666 478888888777665543 1144 4444454333211 26666544
No 335
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.59 E-value=1 Score=42.57 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=23.6
Q ss_pred CCceEEEEccCCCchHHHHHHHH---H-cCC-CEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL---E-SSS-SGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l---~-~~~-~~i~l 107 (508)
.+..+++.||+|+|||+.+.+.. . ..| +++|+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 58899999999999999964332 2 324 66666
No 336
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=80.57 E-value=0.85 Score=41.88 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+.+.||+|||||+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5899999999999999964
No 337
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.49 E-value=0.76 Score=40.55 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=24.5
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~ 118 (508)
.+..+.+.|+.|||||+++-.....-+ +.+...=.++.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~~~~~~ 51 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRIGHEVL 51 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHHHHHHH
Confidence 356778899999999999633332212 33344444444443
No 338
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=80.49 E-value=0.86 Score=41.97 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.-..+++.|-..+ ++.++ .+++++..+..+.+.+++ ..|. -||++|--.+. +.. ++.|+..
T Consensus 150 q~qRv~iAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~g~-tviivtH~~~~-~~~-~d~v~~l 216 (247)
T 2ff7_A 150 QRQRIAIARALVNNP--KILIFDEATSALDYESEHVIMRNMHKICKGR-TVIIIAHRLST-VKN-ADRIIVM 216 (247)
T ss_dssp HHHHHHHHHHHTTCC--SEEEECCCCSCCCHHHHHHHHHHHHHHHTTS-EEEEECSSGGG-GTT-SSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHcCCC-EEEEEeCCHHH-HHh-CCEEEEE
Confidence 455556677765543 46666 478999988777766543 1244 45555543332 223 6666543
No 339
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=80.44 E-value=3 Score=40.29 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=29.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE---cchHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC---GPLRLLAWEV 117 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l---~P~r~La~q~ 117 (508)
.+..+++.|++|+|||+.+++... .+..++|+ .|...++..+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH
Confidence 578999999999999999765543 34566676 4544444443
No 340
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.28 E-value=0.78 Score=46.48 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=16.7
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
++.+++.||+|+|||+.+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4789999999999999863
No 341
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=80.19 E-value=0.84 Score=41.05 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+.+.||.|||||+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999864
No 342
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=80.18 E-value=0.9 Score=41.28 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHh-cC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRF-ND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f-~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-... ++..+ .+++++..+..+.+.+ .. ..+ .-||++|--.+. +.. ++.|+..
T Consensus 135 qkqrv~lAral~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~tvi~vtH~~~~-~~~-~d~v~~l 202 (229)
T 2pze_A 135 QRARISLARAVYKDA--DLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTSKMEH-LKK-ADKILIL 202 (229)
T ss_dssp HHHHHHHHHHHHSCC--SEEEEESTTTTSCHHHHHHHHHHCCCCCTTT-SEEEEECCCHHH-HHH-CSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEECcccCCCHHHHHHHHHHHHHHhhCC-CEEEEEcCChHH-HHh-CCEEEEE
Confidence 444556677775543 46666 4788998888888753 32 123 346666644332 222 5665543
No 343
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=80.15 E-value=0.89 Score=42.41 Aligned_cols=65 Identities=8% Similarity=0.079 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhc----CCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEecccccccccccccEEE
Q 010534 248 RHAIYRLKKAIESR----GKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRII 313 (508)
Q Consensus 248 ~~~~~~l~~~L~~~----~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~~~Gidipv~~VI 313 (508)
.+.--.+++.|-.. ...++..+ .+++++..+..+.+.+++ ..+..-||++|--++.-..+ ++.|+
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~-~d~v~ 219 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALY-ADRIM 219 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHH-CSEEE
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHh-CCEEE
Confidence 44555667777651 01256666 478888888777766543 12344567776544332222 44444
No 344
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.14 E-value=0.66 Score=40.09 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.9
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
+.+.++|++|||||+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI 19 (171)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46789999999999985
No 345
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.04 E-value=0.9 Score=42.19 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.-..+++.|-..+ ++.++ .+++++..+..+.+.+++ ..+. -||++|--.+. +.. ++.|+..
T Consensus 160 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~l~~~~-tviivtH~~~~-~~~-~d~i~~l 226 (260)
T 2ghi_A 160 ERQRIAIARCLLKDP--KIVIFDEATSSLDSKTEYLFQKAVEDLRKNR-TLIIIAHRLST-ISS-AESIILL 226 (260)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCCCTTCHHHHHHHHHHHHHHTTTS-EEEEECSSGGG-STT-CSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEcCCHHH-HHh-CCEEEEE
Confidence 455566777776654 46666 488999988777665543 1243 56666654332 233 6666653
No 346
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.03 E-value=0.83 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+.+.||+|+|||+..
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 356889999999999984
No 347
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=79.99 E-value=2 Score=43.81 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=22.9
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcCCCEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCG 108 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~ 108 (508)
..+.+++.||+|+|||+.+-......+..++.+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 357899999999999998754444444444433
No 348
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=79.93 E-value=0.82 Score=42.40 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEecccccccccccccEEEE
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~~~Gidipv~~VI~ 314 (508)
.+.--.+++.|-..+ ++..+ .+++++..+..+.+.+++ ..| .-||++|--.+.-..+ ++.|+.
T Consensus 158 qkQrv~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g-~tvi~vtHd~~~~~~~-~d~v~~ 225 (257)
T 1g6h_A 158 QMKLVEIGRALMTNP--KMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-ITFLIIEHRLDIVLNY-IDHLYV 225 (257)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTT-CEEEEECSCCSTTGGG-CSEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCHHHHHHh-CCEEEE
Confidence 444556777776543 46666 488999988887776654 123 3466666533322222 455543
No 349
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.89 E-value=0.39 Score=44.65 Aligned_cols=19 Identities=47% Similarity=0.578 Sum_probs=16.1
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.+++.||+|+|||+.+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4568999999999999864
No 350
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=79.63 E-value=3.4 Score=40.88 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHhcC--CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccccc----ccccc-ccc
Q 010534 239 TGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG----MGLNL-NIS 310 (508)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~----~Gidi-pv~ 310 (508)
.+.++|+. ++.-+..+++.+++.+ ..++..+||+.+..+|....+.+.. +..+|+|+|.-.- .-++. .++
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCCCEEEECHHHHHHHHHHhcccccc
Confidence 34555555 8999999999998852 3489999999999888888888888 7789999997321 11445 488
Q ss_pred EEEEccc
Q 010534 311 RIIFSTM 317 (508)
Q Consensus 311 ~VI~~~~ 317 (508)
.||.-..
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8886655
No 351
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.58 E-value=0.96 Score=41.42 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5899999999999999963
No 352
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=79.55 E-value=0.95 Score=42.08 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEecccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAI 301 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~ 301 (508)
.+.-..+++.|-..+ .+..+ .+++++..+..+.+.+++ ..| .-||++|--.
T Consensus 158 q~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g-~tvi~vtHd~ 213 (262)
T 1b0u_A 158 QQQRVSIARALAMEP--DVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEM 213 (262)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CCEEEECSCH
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCH
Confidence 344556677775543 46666 488999888777766543 123 3466666543
No 353
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.55 E-value=1.1 Score=42.81 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.+..+++.||+|+|||+.+.+...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999999999877664
No 354
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=79.28 E-value=0.83 Score=40.86 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HCSEEEEECCTTSSTTHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999984
No 355
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.01 E-value=1.3 Score=38.17 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=14.9
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
+.+.+.|+.|||||+.+
T Consensus 5 ~~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM 21 (169)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999975
No 356
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=78.97 E-value=0.7 Score=44.44 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.++++++.||+|+|||+.+-
T Consensus 45 ~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHH
Confidence 36789999999999999863
No 357
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=78.92 E-value=1 Score=41.08 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
+++..+++.|+.|||||+++
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56789999999999999985
No 358
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.84 E-value=1.5 Score=43.79 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=18.0
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+-+++.||+|+|||+.|-...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHH
Confidence 5889999999999998764433
No 359
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=78.82 E-value=1 Score=41.03 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.6
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
....+.+.||+|||||+.+-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999999864
No 360
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.68 E-value=1.9 Score=40.68 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=17.3
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+++.|+.|||||+++-...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999974443
No 361
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=78.66 E-value=1.1 Score=41.41 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEE
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~ 314 (508)
.+.--.+++.|-..+ ++..+ .+++++..+..+.+.+++ .....-||++|--.+.-..+-.+.|+.
T Consensus 148 qkQrv~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~ 216 (250)
T 2d2e_A 148 EKKRNEILQLLVLEP--TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHV 216 (250)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEE
Confidence 455566777776654 46666 478999988777766543 112335666665333221221256554
No 362
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.64 E-value=12 Score=32.28 Aligned_cols=77 Identities=17% Similarity=0.084 Sum_probs=49.8
Q ss_pred CCchHHHHHHHHHc---CCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccccc----------CCCcEEEEcceec-
Q 010534 87 NSGKTHQALSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV----------DGAKHRAVTVEMA- 152 (508)
Q Consensus 87 GsGKT~~~~~~l~~---~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~----------~~~~~iv~T~e~~- 152 (508)
.+.|-......+.. .+++|+.++++.-+..+++.+...|+.+..++|+..... ....++++|.-..
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 45776665555543 457899999999999999999999999999999654322 2456777774222
Q ss_pred -cccCCccEEEE
Q 010534 153 -DVVSDYDCAVI 163 (508)
Q Consensus 153 -~~l~~~~~iVi 163 (508)
-.+..+++||.
T Consensus 109 Gldi~~~~~VI~ 120 (185)
T 2jgn_A 109 GLDISNVKHVIN 120 (185)
T ss_dssp --CCCSBSEEEE
T ss_pred CCCcccCCEEEE
Confidence 12456777765
No 363
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.58 E-value=1.1 Score=41.58 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEecccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAI 301 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~ 301 (508)
.+.-..+++.|-..+ ++..+ .+++++..+..+.+.+++ ..| .-||++|--.
T Consensus 151 q~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g-~tiiivtHd~ 206 (256)
T 1vpl_A 151 MVRKLLIARALMVNP--RLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSSHNM 206 (256)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTT-CEEEEEECCH
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCccccCHHHHHHHHHHHHHHHhCC-CEEEEEcCCH
Confidence 344455666665443 46666 478899888777666543 123 3466666433
No 364
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.57 E-value=2 Score=40.15 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=15.3
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||.|+|||+.+-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 449999999999999853
No 365
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=78.54 E-value=2 Score=43.67 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCceEEEEccCCCchHHHH--HHHH--HcCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~--~~~l--~~~~~~i~l 107 (508)
.+..+.++|++|||||+.+ +..+ ..+|++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4789999999999999985 2222 235666665
No 366
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.47 E-value=1 Score=44.13 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
...++|+||||||||+..
T Consensus 23 ~g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLF 40 (365)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 347889999999999983
No 367
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=78.46 E-value=1.1 Score=41.74 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEecccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAI 301 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~~ 301 (508)
.+.-..+++.|-..+ ++..+ .+++++..+..+.+.+++ ..| .-||++|--.
T Consensus 164 qkQRv~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g-~tvi~vtHd~ 219 (263)
T 2olj_A 164 QAQRVAIARALAMEP--KIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTHEM 219 (263)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEcCCH
Confidence 344455666665443 46666 478899888777766654 123 3566666543
No 368
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=78.45 E-value=1.1 Score=41.85 Aligned_cols=65 Identities=6% Similarity=-0.047 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcCC-CCCeeEEEecccccccccccccEEEE
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDA-SSEFDVLVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~~-~g~~~ilVaT~~~~~Gidipv~~VI~ 314 (508)
.+.--.+++.|-..+ ++.++ .+++++..+..+.+.+++- ....-||++|--.+.--.+-+++|+.
T Consensus 169 q~QRv~iAraL~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 169 EKKRNDILQMAVLEP--ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEE
Confidence 455566777776654 47766 4899999998888877651 12345777775433222221455554
No 369
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.31 E-value=4.1 Score=38.43 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=44.6
Q ss_pred CCceEEEEccCCCchHHHHH--H-HH-HcCCCEEEE--cchHHHHHHHHHHH-HhCCCceeeeccccccccCCCcEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQAL--S-RL-ESSSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVT 148 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~--~-~l-~~~~~~i~l--~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (508)
.++.+.++|++|+|||+.+. . .+ ..+++++++ -+.+..+..+...+ ...|+.+.. ++... +..-+ .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~--~~~~~---~p~~l--~ 169 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VMDGE---SPESI--R 169 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CCTTC---CHHHH--H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE--cCCCC---CHHHH--H
Confidence 47788899999999999852 2 22 235677666 34444443322222 233443321 11100 00000 0
Q ss_pred ceecccc--CCccEEEEcccccc
Q 010534 149 VEMADVV--SDYDCAVIDEIQML 169 (508)
Q Consensus 149 ~e~~~~l--~~~~~iViDEah~~ 169 (508)
...+... .++++|||||.-..
T Consensus 170 ~~~l~~~~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCS
T ss_pred HHHHHHHHhCCCCEEEEeCCCCc
Confidence 0112222 67999999999544
No 370
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=78.27 E-value=1.1 Score=41.89 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcCC--CCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~~--~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.-..+++.|-..+ ++.++ .+++++..+..+.+.+++- ....-||+.|--.+. +.. ++.|+..
T Consensus 161 q~QRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~~-~d~v~~l 229 (271)
T 2ixe_A 161 QRQAVALARALIRKP--RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AER-AHHILFL 229 (271)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HTT-CSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHh-CCEEEEE
Confidence 344456667665443 46666 4789999888877766541 112346666643332 222 5666543
No 371
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=78.02 E-value=1.1 Score=42.74 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.9
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||+|||||+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4678999999999999985
No 372
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.97 E-value=1.2 Score=39.29 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.2
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
.+.+.|+.|||||+++-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78899999999999963
No 373
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=77.84 E-value=1 Score=46.14 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.7
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.++++.||+|+|||+.+-
T Consensus 40 ~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHH
T ss_pred cCCeeEeecCchHHHHHHHH
Confidence 47899999999999999863
No 374
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=77.77 E-value=1.2 Score=41.59 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEeccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDA 300 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~ 300 (508)
.+.--.+++.|-... ++..+ .+++++..+..+.+.+++ ..| .-||++|--
T Consensus 143 q~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g-~tii~vtHd 197 (266)
T 2yz2_A 143 EKRRVAIASVIVHEP--DILILDEPLVGLDREGKTDLLRIVEKWKTLG-KTVILISHD 197 (266)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred HHHHHHHHHHHHcCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHcC-CEEEEEeCC
Confidence 344455666665443 46666 488999988877766654 124 346666653
No 375
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=77.76 E-value=1.1 Score=41.29 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999964
No 376
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=77.75 E-value=1.2 Score=41.11 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999974
No 377
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.57 E-value=1.2 Score=44.77 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=18.5
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+-+++.||+|+|||+.|-...
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHH
Confidence 46889999999999998764433
No 378
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=77.53 E-value=1.2 Score=41.87 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeE--EEecccccccccccccEEEE
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDV--LVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~i--lVaT~~~~~Gidipv~~VI~ 314 (508)
.+.-..+++.|-... ++..+ .+++++..+..+.+.+++ ..|. -| |++|--.+.-..+ ++.|+.
T Consensus 166 qkqRv~lAraL~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~-tv~~iivtHd~~~~~~~-~d~v~~ 235 (279)
T 2ihy_A 166 EKQRVMIARALMGQP--QVLILDEPAAGLDFIARESLLSILDSLSDSYP-TLAMIYVTHFIEEITAN-FSKILL 235 (279)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHHCT-TCEEEEEESCGGGCCTT-CCEEEE
T ss_pred HHHHHHHHHHHhCCC--CEEEEeCCccccCHHHHHHHHHHHHHHHHCCC-EEEEEEEecCHHHHHHh-CCEEEE
Confidence 444556677776543 46666 478999888777766544 1133 34 5555443322222 455543
No 379
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.45 E-value=2.6 Score=39.87 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=44.7
Q ss_pred CceEEEEccCCCchHHHHHH---HH-HcCCCEEEE--cchHHHHHHHHHHHH-hCCCceeeeccccccccCCCcEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQALS---RL-ESSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l-~~~~~~i~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (508)
++.++++|++|+|||+.+.. .+ ..+++++++ -|.|..+.++...+. ..|+++. .+... .+...+ ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~--~~~~~---~~p~~~--~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY--GEPGE---KDVVGI--AK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE--CCTTC---CCHHHH--HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE--ecCCC---CCHHHH--HH
Confidence 67888999999999998522 22 345677666 344544444333332 3344432 22110 000000 00
Q ss_pred eecccc--CCccEEEEcccccc
Q 010534 150 EMADVV--SDYDCAVIDEIQML 169 (508)
Q Consensus 150 e~~~~l--~~~~~iViDEah~~ 169 (508)
+.+..+ .++++||||=+-..
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSC
T ss_pred HHHHHHHhCCCCEEEEeCCCCc
Confidence 122222 67899999987554
No 380
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.39 E-value=1.2 Score=40.90 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=15.6
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
...+.|.|+.|||||+++
T Consensus 22 ~~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVC 39 (252)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 457889999999999975
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.10 E-value=1.2 Score=41.81 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=16.1
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
...+.+.|+.|||||+++
T Consensus 75 ~~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVA 92 (281)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 467899999999999986
No 382
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=77.10 E-value=2.7 Score=48.02 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCceEEEEccCCCchHHHH----HHHHHcC------------CCEEEEcchHHHHHHHHHHHHh
Q 010534 76 VRKVILHVGPTNSGKTHQA----LSRLESS------------SSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~----~~~l~~~------------~~~i~l~P~r~La~q~~~~l~~ 123 (508)
.+. .+|.|.-|||||++. +..|... .+++++.=|+..|.++.+|+.+
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 344 499999999999994 4555432 1568899999999999999874
No 383
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=77.06 E-value=1.2 Score=45.27 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
....++++.||+|+|||+.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999985
No 384
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.98 E-value=0.65 Score=44.88 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
...+++.||+|+|||+.+-.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 45699999999999998643
No 385
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=76.91 E-value=7.4 Score=33.14 Aligned_cols=82 Identities=16% Similarity=0.003 Sum_probs=54.7
Q ss_pred EEccCCCchHHHHHHHHHc--CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcc
Q 010534 82 HVGPTNSGKTHQALSRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTV 149 (508)
Q Consensus 82 v~~pTGsGKT~~~~~~l~~--~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~ 149 (508)
+..+....|-......+.. .+++|+.++++.-+..+++.+.+.|..+..++|+.... .....++++|.
T Consensus 13 ~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 13 VLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp EECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred EEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 3334333465544444433 35789999999999999999999999999999974321 12456777775
Q ss_pred eecc--ccCCccEEEE
Q 010534 150 EMAD--VVSDYDCAVI 163 (508)
Q Consensus 150 e~~~--~l~~~~~iVi 163 (508)
-... .+..+++||.
T Consensus 93 ~~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 93 VCARGIDVKQVTIVVN 108 (175)
T ss_dssp SCCTTTCCTTEEEEEE
T ss_pred chhcCCCcccCCEEEE
Confidence 3322 2466777775
No 386
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=76.74 E-value=2.3 Score=42.12 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.1
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.+..+.|.||+|||||+.+.+.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 48999999999999999987554
No 387
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=76.63 E-value=11 Score=31.54 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=52.2
Q ss_pred chHHHHHHHHH--cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcceecc--c
Q 010534 89 GKTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD--V 154 (508)
Q Consensus 89 GKT~~~~~~l~--~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~--~ 154 (508)
.|.......+. ..+++++.++++.-+..+++.+.+.|..+..++|+.... .....++++|.-... .
T Consensus 16 ~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d 95 (165)
T 1fuk_A 16 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGID 95 (165)
T ss_dssp GHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCC
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCC
Confidence 36665544443 346889999999999999999999999999999874321 224567777753222 2
Q ss_pred cCCccEEEE
Q 010534 155 VSDYDCAVI 163 (508)
Q Consensus 155 l~~~~~iVi 163 (508)
+..+++||.
T Consensus 96 ~~~~~~Vi~ 104 (165)
T 1fuk_A 96 VQQVSLVIN 104 (165)
T ss_dssp CCSCSEEEE
T ss_pred cccCCEEEE
Confidence 356777775
No 388
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=76.61 E-value=3.4 Score=36.65 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=22.9
Q ss_pred CceEEEEccCCCchHHHH---HHHHHcCCCEEEE-cch
Q 010534 77 RKVILHVGPTNSGKTHQA---LSRLESSSSGIYC-GPL 110 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~---~~~l~~~~~~i~l-~P~ 110 (508)
++-+++.|+-||||||++ ...+.++..++.. -|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCC
Confidence 456889999999999996 2344444445444 554
No 389
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.59 E-value=4.4 Score=40.72 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=24.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----c-CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~-~~~~i~l 107 (508)
.+..+++.|++|+|||+.+++... . +.+++|+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 578999999999999999765442 2 3467776
No 390
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=76.56 E-value=2.1 Score=39.57 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=34.2
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc----CCCEEEEcchHHHHHHHHHHHHhCCCce
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~----~~~~i~l~P~r~La~q~~~~l~~~g~~~ 128 (508)
.+..+++.|.+|+|||+.+++++.+ +.+++|+. +-+-..++.++++.+|+..
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~-~~e~~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFS-ISYPLQLIIRILSRFGVDV 75 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEE-CSSCHHHHHHHHHHTTCCH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEE-EeCCHHHHHHHHHHcCCCH
Confidence 4788999989999999777777643 34666662 2223345555666666654
No 391
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=76.34 E-value=2.2 Score=37.96 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=17.2
Q ss_pred CceEEEEccCCCchHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSR 97 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~ 97 (508)
+..+.+.|++|||||+++-..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987433
No 392
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=76.01 E-value=9.8 Score=31.93 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=53.2
Q ss_pred CCchHHHHHHHHH--cCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcceecc-
Q 010534 87 NSGKTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD- 153 (508)
Q Consensus 87 GsGKT~~~~~~l~--~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~- 153 (508)
...|-......+. ..+++|+.++++.-+..+++.+.+.|+.+..++|+.... .....++++|.-...
T Consensus 19 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 19 EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 3556655444443 356889999999999999999999999999999974321 124567777742222
Q ss_pred -ccCCccEEEE
Q 010534 154 -VVSDYDCAVI 163 (508)
Q Consensus 154 -~l~~~~~iVi 163 (508)
.+..+++||.
T Consensus 99 ld~~~~~~Vi~ 109 (163)
T 2hjv_A 99 IDIENISLVIN 109 (163)
T ss_dssp CCCSCCSEEEE
T ss_pred CchhcCCEEEE
Confidence 2356777775
No 393
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.94 E-value=1.3 Score=46.05 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+++.||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999986
No 394
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.89 E-value=1.4 Score=40.74 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
+...+++.|+.|||||+++
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3578899999999999987
No 395
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=75.85 E-value=2.9 Score=36.78 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=25.7
Q ss_pred CCceEEEEccCCCchHHHH----HHHHHcCCCEEEEc
Q 010534 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCG 108 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~----~~~l~~~~~~i~l~ 108 (508)
.+..+++.+++|.|||++| +.++-.+.++++++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4568999999999999996 45555567888874
No 396
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=75.83 E-value=1.2 Score=40.38 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=14.8
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
+++..+++.|+.|||||+++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp CCCCEEEEECCC---CHHHH
T ss_pred cCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999995
No 397
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=75.74 E-value=1.3 Score=44.55 Aligned_cols=19 Identities=53% Similarity=0.649 Sum_probs=16.7
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+++++.||+|+|||+.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 5679999999999999863
No 398
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=75.73 E-value=1.4 Score=39.52 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+++
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4788999999999999996
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=75.65 E-value=1.8 Score=37.43 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
-+.++++|+.|||||+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred ceEEEEEeCCCCCHHHHH
Confidence 357889999999999975
No 400
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.32 E-value=3.9 Score=41.14 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----cCCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~~~~~i~l 107 (508)
.+..+++.|++|+|||+.+++... .+.+++|+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 578999999999999999766543 33456666
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=75.30 E-value=1.5 Score=41.51 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHh-cC-CCCCeeEEEecccccccccccccEEEE
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRF-ND-ASSEFDVLVASDAIGMGLNLNISRIIF 314 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f-~~-~~g~~~ilVaT~~~~~Gidipv~~VI~ 314 (508)
.+.--.+++.|-... ++..+ .+++++..+..+.+.+ .. ..|. -||++|--.+. +.. ++.|+.
T Consensus 164 q~QRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~-tviivtHd~~~-~~~-~d~i~~ 230 (290)
T 2bbs_A 164 QRARISLARAVYKDA--DLYLLDSPFGYLDVLTEKEIFESCVCKLMANK-TRILVTSKMEH-LKK-ADKILI 230 (290)
T ss_dssp HHHHHHHHHHHHSCC--SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTS-EEEEECCCHHH-HHH-SSEEEE
T ss_pred HHHHHHHHHHHHCCC--CEEEEECCcccCCHHHHHHHHHHHHHHhhCCC-EEEEEecCHHH-HHc-CCEEEE
Confidence 455556777776543 46666 4789999888888753 22 1233 45555543332 222 555554
No 402
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=74.91 E-value=1.6 Score=39.59 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~ 95 (508)
..+..+.+.|+.|||||+++-
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 346789999999999999863
No 403
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.80 E-value=1.6 Score=39.82 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.8
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+++.|+.|||||+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467899999999999975
No 404
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.73 E-value=4.4 Score=40.41 Aligned_cols=53 Identities=26% Similarity=0.245 Sum_probs=31.6
Q ss_pred CCceEEEEccCCCchHHHHH---HHHH-cCCCEEEE--cchHHHHHHHHHHHH-hCCCce
Q 010534 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~---~~l~-~~~~~i~l--~P~r~La~q~~~~l~-~~g~~~ 128 (508)
.++.+.++|++|+|||+.+. ..+. .+++++++ =+.+..+.++...+. ..|+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 36788889999999999852 2223 34566655 355555544333333 335443
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.06 E-value=2.8 Score=43.19 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=24.3
Q ss_pred CCceEEEEccCCCchHHHHHHH----HHc-CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSR----LES-SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~----l~~-~~~~i~l 107 (508)
.+..+.+.||+|||||+.+... +.. +...+++
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999997553 333 4456666
No 406
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=74.05 E-value=1.6 Score=42.20 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.....+++||+|||||+..
T Consensus 22 ~~~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLL 40 (339)
T ss_dssp CSEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678899999999999983
No 407
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=73.98 E-value=1.4 Score=40.25 Aligned_cols=51 Identities=8% Similarity=0.057 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCeeEEEeccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDA 300 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~--~~g~~~ilVaT~~ 300 (508)
.+.--.+++.|-..+ ++..+ .+++++..+..+.+.+++ .....-||++|--
T Consensus 131 qkqRv~lAral~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 131 ERQRVALARALVIQP--RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp HHHHHHHHHHHTTCC--SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 344455666665443 35555 478899888777766644 1112346666643
No 408
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=73.93 E-value=1.6 Score=42.81 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+++.||+|||||+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5789999999999999975
No 409
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.85 E-value=3.5 Score=37.23 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
+-++++.++.|+|||+.++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 4568999999999999964
No 410
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=73.84 E-value=0.72 Score=43.10 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=52.1
Q ss_pred HHH-hcccCCCccccChHHHHHHHHhhhcCCCCHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCcccchhhcc
Q 010534 405 FLE-NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479 (508)
Q Consensus 405 ~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 479 (508)
|.+ +++|+......+.+.|..++++.++..+|..++. ++..|+ +|.+.++++..+..-|..+.+++..++.
T Consensus 8 l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~-ma~lPl---~P~lakmLl~a~~~~c~~~~l~iaA~Ls 79 (270)
T 3i4u_A 8 FELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRR-MAEFPL---EPMLCKMLIMSVHLGCSEEMLTIVSMLS 79 (270)
T ss_dssp ------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHH-HTTSCS---CHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHH-HHhCCC---CHHHHHHHHHhhhcCCHHHHHHHHHHHC
Confidence 444 5566666677778888999998888889998977 899999 7899999988777667776677655544
No 411
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=73.72 E-value=2 Score=40.80 Aligned_cols=18 Identities=44% Similarity=0.669 Sum_probs=15.7
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
.++++.||+|+|||+.+-
T Consensus 47 ~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 369999999999999863
No 412
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.69 E-value=0.97 Score=42.73 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=12.9
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
+..+.|.||.|||||+.+
T Consensus 5 ~~iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVK 22 (290)
T ss_dssp SCEEEEESCC---CCTHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 567889999999999986
No 413
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=73.67 E-value=8.6 Score=34.04 Aligned_cols=77 Identities=14% Similarity=0.068 Sum_probs=53.5
Q ss_pred CCchHHHHHHHH--HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcceec--
Q 010534 87 NSGKTHQALSRL--ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMA-- 152 (508)
Q Consensus 87 GsGKT~~~~~~l--~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~-- 152 (508)
...|.......+ ...+++|+.++++.-+..+++.+.+.|+.+..++|+.... .....++++|.-..
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 356766654444 3467889999999999999999999899999999974321 22456777775222
Q ss_pred cccCCccEEEE
Q 010534 153 DVVSDYDCAVI 163 (508)
Q Consensus 153 ~~l~~~~~iVi 163 (508)
-.+..+++||.
T Consensus 95 idi~~v~~Vi~ 105 (212)
T 3eaq_A 95 LDIPQVDLVVH 105 (212)
T ss_dssp SSCCCBSEEEE
T ss_pred CCCccCcEEEE
Confidence 22366777763
No 414
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.67 E-value=1.6 Score=44.41 Aligned_cols=19 Identities=53% Similarity=0.592 Sum_probs=16.2
Q ss_pred CceEEEEccCCCchHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~ 95 (508)
.+.+++.||+|+|||+.+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999999863
No 415
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=73.37 E-value=1.7 Score=40.40 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcCCCCCeeEEEeccccc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~~~ 302 (508)
.+.--.+++.|-..+ ++..+ .+++++..+..+.+.+++-.. -||++|--.+
T Consensus 133 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~ 186 (263)
T 2pjz_A 133 QSVLVRTSLALASQP--EIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD 186 (263)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred HHHHHHHHHHHHhCC--CEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence 444556677776543 46666 478999999888887775212 5666665433
No 416
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=73.21 E-value=4.6 Score=41.29 Aligned_cols=32 Identities=6% Similarity=-0.119 Sum_probs=25.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----c-CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~-~~~~i~l 107 (508)
.+..++|.|++|+|||+.+++.+. . +.+++|+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 588999999999999999876653 2 3467776
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=73.18 E-value=1.7 Score=42.29 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 29 ~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5889999999999999963
No 418
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.00 E-value=1.6 Score=42.10 Aligned_cols=16 Identities=38% Similarity=0.727 Sum_probs=14.6
Q ss_pred EEEEccCCCchHHHHH
Q 010534 80 ILHVGPTNSGKTHQAL 95 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~~ 95 (508)
+++.||.|+|||+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999863
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.92 E-value=2.2 Score=42.59 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=19.3
Q ss_pred CCceEEEEccCCCchHHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
+...++++|+.|||||+.+-....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999998755443
No 420
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.70 E-value=1.7 Score=41.92 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=15.2
Q ss_pred ceEEEEccCCCchHHHH
Q 010534 78 KVILHVGPTNSGKTHQA 94 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~ 94 (508)
.++++.||+|+|||+.+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999986
No 421
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=72.52 E-value=2.7 Score=40.02 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHHc
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLES 100 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~ 100 (508)
.++-+++.|+.|+|||+.++..+..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5888999999999999999886653
No 422
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=72.30 E-value=1.7 Score=42.31 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 40 ~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5899999999999999974
No 423
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=72.17 E-value=2 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=16.5
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+++.|++|+|||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4778999999999999864
No 424
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=71.69 E-value=3.9 Score=35.96 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=21.4
Q ss_pred EEEEccCCCchHHHH---HHHHHcCC-CEEEE-cchH
Q 010534 80 ILHVGPTNSGKTHQA---LSRLESSS-SGIYC-GPLR 111 (508)
Q Consensus 80 ~iv~~pTGsGKT~~~---~~~l~~~~-~~i~l-~P~r 111 (508)
+++.|+-||||||++ ...+.+.| .+++. -|..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~ 39 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGG 39 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 567899999999996 34555554 44444 5543
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=71.64 E-value=2 Score=42.21 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5899999999999999973
No 426
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.41 E-value=1.9 Score=46.70 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
....++++.||+|+|||+.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHH
T ss_pred CCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999996
No 427
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=71.40 E-value=1.9 Score=40.28 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.1
Q ss_pred eEEEEccCCCchHHHH
Q 010534 79 VILHVGPTNSGKTHQA 94 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~ 94 (508)
++.++||+|+|||+..
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999974
No 428
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=71.40 E-value=1.8 Score=42.16 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5889999999999999973
No 429
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=71.22 E-value=1.9 Score=42.18 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5889999999999999974
No 430
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=71.11 E-value=20 Score=27.55 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=37.7
Q ss_pred EEEEe-e-HHHHHHHHHHHHhcCCCeEEEEcCCCCHHHHHHHHHHhcC
Q 010534 242 CIVTF-S-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287 (508)
Q Consensus 242 ~iv~~-s-~~~~~~l~~~L~~~~~~~v~~lhg~l~~~~R~~~~~~f~~ 287 (508)
+.++| | ..-..++.+.++..|. ++..+|++...+.|.+-++.|.+
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchHHHHHHHHHHHHH
Confidence 44556 3 6667788888988887 99999999999999999999987
No 431
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=70.84 E-value=2.3 Score=41.35 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|.||||||+..
T Consensus 104 ~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 104 YNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCEEEEEeCCCCCCccEEe
Confidence 4667788999999999875
No 432
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=70.83 E-value=2.4 Score=38.32 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
..+..+++.|+.|||||+++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999985
No 433
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=70.82 E-value=9.6 Score=33.15 Aligned_cols=77 Identities=12% Similarity=-0.012 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHc-CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcceec--c
Q 010534 87 NSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMA--D 153 (508)
Q Consensus 87 GsGKT~~~~~~l~~-~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~--~ 153 (508)
...|.......+.. .+++|+.++++.-+..+++.|...|+.+..++|+.... .....++++|.-.. -
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 35676655555544 45789999999999999999998899999999974321 12456777775221 2
Q ss_pred ccCCccEEEE
Q 010534 154 VVSDYDCAVI 163 (508)
Q Consensus 154 ~l~~~~~iVi 163 (508)
.+..+++||.
T Consensus 119 di~~v~~VI~ 128 (191)
T 2p6n_A 119 DFPAIQHVIN 128 (191)
T ss_dssp CCCCCSEEEE
T ss_pred CcccCCEEEE
Confidence 2456777765
No 434
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=70.74 E-value=12 Score=31.70 Aligned_cols=77 Identities=12% Similarity=-0.018 Sum_probs=53.9
Q ss_pred CCchHHHHHHHHHc--CCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcceecc-
Q 010534 87 NSGKTHQALSRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD- 153 (508)
Q Consensus 87 GsGKT~~~~~~l~~--~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~- 153 (508)
...|.......+.. .+++|+.++++.-+..+++.+...|+.+..++|+.... .....++++|.-...
T Consensus 15 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 35576655444433 45889999999999999999999999999999975322 224567788752222
Q ss_pred -ccCCccEEEE
Q 010534 154 -VVSDYDCAVI 163 (508)
Q Consensus 154 -~l~~~~~iVi 163 (508)
.+..+++||.
T Consensus 95 ldi~~~~~Vi~ 105 (172)
T 1t5i_A 95 MDIERVNIAFN 105 (172)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhhCCEEEE
Confidence 2356777775
No 435
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=70.73 E-value=2.6 Score=42.60 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=24.7
Q ss_pred CCceEEEEccCCCchHHHHHHHHH----c-CCCEEEE
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~----~-~~~~i~l 107 (508)
.+..+++.|++|+|||+.+++... . +..++|+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 588999999999999999765442 2 3467777
No 436
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=70.58 E-value=2.1 Score=42.21 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||+|||||+..
T Consensus 46 ~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5899999999999999974
No 437
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=70.55 E-value=2 Score=40.58 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=15.0
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
++++.||+|+|||+.+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 48999999999999863
No 438
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=70.52 E-value=2.2 Score=37.73 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=18.1
Q ss_pred cCCceEEEEccCCCchHHHHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
|++..+.|.|+.|||||+++-..-
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la 27 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLA 27 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 456789999999999999874433
No 439
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=70.43 E-value=2.5 Score=40.57 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=16.6
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|+||||||+...
T Consensus 77 ~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CeEEEEEECCCCCCCceEec
Confidence 46667889999999999864
No 440
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.43 E-value=5 Score=40.16 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=27.6
Q ss_pred CceEEEEccCCCchHHHHHH---HHH-c-CCCEEEE--cchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLE-S-SSSGIYC--GPLRLLAWEVAK 119 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~-~-~~~~i~l--~P~r~La~q~~~ 119 (508)
.++++++|++|+|||+.+.. ++. . +.+++++ =|.|..+.++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 46788899999999999632 233 3 5566665 355555544433
No 441
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=70.27 E-value=3.8 Score=39.10 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.9
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEEE
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l 107 (508)
++.++|.||.|+|||+.+-+.....+ .+|+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 47899999999999999876665544 6665
No 442
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=70.20 E-value=3 Score=38.69 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=16.6
Q ss_pred CceEEEEccCCCchHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALS 96 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~ 96 (508)
.+.+++.||.|+|||+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34699999999999998653
No 443
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=70.00 E-value=2 Score=42.07 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 5899999999999999973
No 444
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=69.97 E-value=2.2 Score=44.67 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-..+ ++..+ .++++++.+..+.+.++. ..+..-|+|+-+. +. +. .++.|+..
T Consensus 482 q~Qrv~lAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l-~~-~~-~~d~i~~l 548 (578)
T 4a82_A 482 QKQRLSIARIFLNNP--PILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL-ST-IT-HADKIVVI 548 (578)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSG-GG-TT-TCSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCH-HH-HH-cCCEEEEE
Confidence 555667788887654 46666 478888887776665543 1255444444443 32 22 26776654
No 445
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.95 E-value=6 Score=40.39 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=43.3
Q ss_pred CceEEEEccCCCchHHHHHH---HHHc-CCCEEEEc--chHHHHHHHHHHH-HhCCCceeeeccccccccCCCcEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQALS---RLES-SSSGIYCG--PLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTV 149 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~---~l~~-~~~~i~l~--P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (508)
..+++++|++|+|||+.+.. ++.. +.+++++. |.|..+.++.+.. ...++++...... . + +.-+ ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~-~----d-p~~i-~~ 173 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE-M----D-PVII-AS 173 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCC-S----C-HHHH-HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCC-C----C-HHHH-HH
Confidence 45788999999999999632 2223 45665552 3455554433333 2334443221000 0 0 0000 00
Q ss_pred eecccc--CCccEEEEcccccc
Q 010534 150 EMADVV--SDYDCAVIDEIQML 169 (508)
Q Consensus 150 e~~~~l--~~~~~iViDEah~~ 169 (508)
+.+..+ ..++++|||-+=..
T Consensus 174 ~al~~~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 174 EGVEKFKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHCCCcEEEEeCCCCc
Confidence 111222 67899999988654
No 446
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=69.66 E-value=2.1 Score=41.97 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 36 ~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5889999999999999973
No 447
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=69.63 E-value=2.6 Score=40.76 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.3
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 94 ~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCCeEE
Confidence 5677788999999999985
No 448
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=69.53 E-value=1.7 Score=42.20 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 25 ~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp TTCEEEEECCCTHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 5889999999999999974
No 449
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.53 E-value=4.2 Score=44.36 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=18.6
Q ss_pred CCceEEEEccCCCchHHHHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.++.++++||+|||||+.+-...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 46789999999999999864433
No 450
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.49 E-value=2.1 Score=40.93 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHh--cCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEeccc
Q 010534 248 RHAIYRLKKAIES--RGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDA 300 (508)
Q Consensus 248 ~~~~~~l~~~L~~--~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~ 300 (508)
.+.-..++..|.. .....+.++ .+++++..+..+.+.+++ ..+ ..||+.|--
T Consensus 224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~vi~~tH~ 281 (322)
T 1e69_A 224 EKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKH-TQFIVITHN 281 (322)
T ss_dssp HHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTT-SEEEEECCC
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEECC
Confidence 4555566776643 122256665 578999988777766554 124 345555543
No 451
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.14 E-value=4.1 Score=41.90 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=30.1
Q ss_pred CCceEEEEccCCCchHHHHHHHH---H-cCCCEEEEcchHHHHHHHHHHHHhCC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRL---E-SSSSGIYCGPLRLLAWEVAKRLNKAN 125 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l---~-~~~~~i~l~P~r~La~q~~~~l~~~g 125 (508)
.+..+++.||+|||||+.+.+.. . .+.+++|+.+... ..++..+...+|
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g 332 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWG 332 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcC
Confidence 58899999999999999964433 2 2335667644221 224444444333
No 452
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=69.04 E-value=2.5 Score=41.28 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+.+.||.|||||+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5899999999999999873
No 453
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=68.99 E-value=2.5 Score=43.25 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=16.5
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
..+++|.|+||||||+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 688999999999999984
No 454
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.87 E-value=2.3 Score=43.48 Aligned_cols=18 Identities=56% Similarity=0.724 Sum_probs=15.6
Q ss_pred ceEEEEccCCCchHHHHH
Q 010534 78 KVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~ 95 (508)
+.+++.||+|+|||+.+-
T Consensus 65 ~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp SEEEEECSSSSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999999863
No 455
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=68.56 E-value=2.8 Score=40.85 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=16.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 84 ~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEeecCCCCCCceEE
Confidence 4666778999999999985
No 456
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.40 E-value=2.2 Score=44.80 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=17.5
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.++.+++.||+|+|||+.+
T Consensus 59 ~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 5789999999999999996
No 457
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=68.13 E-value=5.1 Score=43.41 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=26.2
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL 113 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~L 113 (508)
.+.+++.||.|+|||+.+-....+.+..++.+..-.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l 274 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI 274 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh
Confidence 5789999999999999876555555555555443333
No 458
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=68.12 E-value=10 Score=37.84 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=46.2
Q ss_pred cCCCEEEEcchHHHHHHHHHHHHhCCCceeeecccccccc------CCCcEEEEcc--eeccccCCccEEE
Q 010534 100 SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV------DGAKHRAVTV--EMADVVSDYDCAV 162 (508)
Q Consensus 100 ~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~------~~~~~iv~T~--e~~~~l~~~~~iV 162 (508)
..+++++.+|++.-+..+++.+++.|.++..++|+++... ....++|+|. ++--.+. +++||
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEE
Confidence 3568899999999999999999999999999999654321 2456788886 2222335 77776
No 459
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=68.07 E-value=3 Score=40.46 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|.||||||+..
T Consensus 89 ~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 89 FNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceeEEeecCCCCCCCEEe
Confidence 4677788999999999975
No 460
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=67.94 E-value=2.9 Score=40.48 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 77 ~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 77 YNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CccceeeecCCCCCCCeEE
Confidence 4667778999999999875
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=67.85 E-value=4.2 Score=38.68 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
.++-+++.|+.|+|||+.++..+..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 37889999999999999998887653
No 462
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.83 E-value=3 Score=40.05 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.4
Q ss_pred cCCceEEEEccCCCchHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~ 94 (508)
.-+-.++..|+||||||+..
T Consensus 79 G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 79 GFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TCCEEEEEESSTTSSHHHHH
T ss_pred CCEEEEEeECCCCCCCcEEE
Confidence 34666778999999999885
No 463
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=67.76 E-value=2.4 Score=42.88 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.|.||+|||||+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SCCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6899999999999999984
No 464
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.70 E-value=3.1 Score=40.25 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=16.6
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|.||||||+...
T Consensus 84 ~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 84 YNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred ceeEEEEECCCCCCCcEecc
Confidence 46667789999999999864
No 465
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=67.70 E-value=2.5 Score=44.19 Aligned_cols=63 Identities=10% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-..+ ++..+ .++++++.+..+.+.+++ ..|..-|+|+-+. +. +. .++.|+..
T Consensus 485 q~qrl~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~-~~-~~-~~d~i~~l 551 (582)
T 3b60_A 485 QRQRIAIARALLRDS--PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL-ST-IE-QADEIVVV 551 (582)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCG-GG-TT-TCSEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccH-HH-HH-hCCEEEEE
Confidence 455567788876654 47776 478999888777766654 1255444444443 22 22 26776654
No 466
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=67.63 E-value=3.5 Score=34.09 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=16.8
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
..+++.|++|+|||+..-...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358899999999998765544
No 467
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=67.59 E-value=3.1 Score=40.30 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 83 ~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 83 FNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred cCeeEEEecccCCCceEee
Confidence 4666788999999999985
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=67.57 E-value=2.6 Score=44.20 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-... ++..+ .++++++.+..+.+.+++ ..|..-|+|+-+.-. +. .+|.|+..
T Consensus 484 qrQrv~lARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~--~~-~~d~i~vl 550 (587)
T 3qf4_A 484 QKQRLSIARALVKKP--KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT--AL-LADKILVL 550 (587)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH--HT-TSSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH--HH-hCCEEEEE
Confidence 555666777776554 46666 478888888777666543 225555555555432 12 36666644
No 469
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.51 E-value=3.4 Score=40.88 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=16.5
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|.||||||+...
T Consensus 140 ~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 140 YNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp CCEEEEEESCTTSSHHHHHH
T ss_pred cceEEEEECCCCCCCceEeC
Confidence 45667789999999999864
No 470
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=67.37 E-value=2.5 Score=44.15 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-..+ ++..+ .++++++.+..+.+.+++ ..|..-|+|+-+.-. +. .++.|+..
T Consensus 485 q~qr~~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~--~~-~~d~i~~l 551 (582)
T 3b5x_A 485 QRQRVAIARALLRDA--PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST--IE-QADEILVV 551 (582)
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH--HH-hCCEEEEE
Confidence 455556777776543 46666 478888888777766654 225544445444321 12 26666643
No 471
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=67.35 E-value=3.1 Score=40.70 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 101 ~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 101 FNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CeeeEEeecCCCCCCCEeE
Confidence 4667778999999999885
No 472
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=67.07 E-value=2.5 Score=41.23 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.4
Q ss_pred CceEEEEccCCCchHHHH
Q 010534 77 RKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~ 94 (508)
++.+.++||+|||||+.+
T Consensus 170 g~k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV 187 (365)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred hCeEEEECCCCCCHHHHH
Confidence 678999999999999985
No 473
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.03 E-value=3.9 Score=38.60 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.0
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
++++.||+|+|||+.+-
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999999863
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=66.80 E-value=2.4 Score=44.57 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEcc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~~ 316 (508)
.+.--.+++.|-..+ ++..+ .++++++.+..+.+.+++ ..|..-|+|+-+.-. +. .++.|+..+
T Consensus 496 q~Qrv~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~--~~-~~d~i~~l~ 563 (598)
T 3qf4_B 496 QRQLLAITRAFLANP--KILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT--IK-NADLIIVLR 563 (598)
T ss_dssp HHHHHHHHHHHHTCC--SEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH--HH-HCSEEEEEC
T ss_pred HHHHHHHHHHHhcCC--CEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH--HH-cCCEEEEEE
Confidence 455566777776554 46666 478888877776655543 125544554444322 11 267766543
No 475
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=66.80 E-value=9.3 Score=43.17 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCEEEEe-eHHHHHHHHHHHHhcC--CCeEEEEcCCCCHHHHHHHHHHhcCCCCCeeEEEeccc-----ccccccc-ccc
Q 010534 240 GDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMGLNL-NIS 310 (508)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~lhg~l~~~~R~~~~~~f~~~~g~~~ilVaT~~-----~~~Gidi-pv~ 310 (508)
+.++|+. ++.-+.++++.+++.+ ..++..+||+.+..+|..+.+.+.+ |..+|+|+|.- +.. +++ .++
T Consensus 122 ~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~~~IlV~Tp~rL~~~l~~-l~~~~l~ 198 (1104)
T 4ddu_A 122 KKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREK-LSQKRFD 198 (1104)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SCCSEEEEEHHHHHHSHHH-HHTSCCS
T ss_pred CeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEECHHHHHHHHHh-hcccCcC
Confidence 3455555 8999999999998843 2379999999999888899999998 87899999962 222 455 488
Q ss_pred EEEEccc
Q 010534 311 RIIFSTM 317 (508)
Q Consensus 311 ~VI~~~~ 317 (508)
.||.-..
T Consensus 199 ~lViDEa 205 (1104)
T 4ddu_A 199 FVFVDDV 205 (1104)
T ss_dssp EEEESCH
T ss_pred EEEEeCC
Confidence 8887655
No 476
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=66.74 E-value=2.9 Score=40.59 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.4
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|+||||||+...
T Consensus 80 ~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 80 YNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CcceEEEECCCCCCcceEee
Confidence 46667789999999999763
No 477
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=66.62 E-value=3.2 Score=40.30 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 92 ~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 92 YNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred ceeEEEeeCCCCCCCceEE
Confidence 4666788999999999985
No 478
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.57 E-value=3.3 Score=40.44 Aligned_cols=45 Identities=24% Similarity=0.368 Sum_probs=26.6
Q ss_pred cCCceEEEEccCCCchHHHHHHHHHcCCCEEEEcchHHHHHHHHHHHHh
Q 010534 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P~r~La~q~~~~l~~ 123 (508)
.-+-.++..|.||||||+...-.-.....+ ++|+ .+.++++.+.+
T Consensus 88 G~N~tifAYGqTGSGKTyTm~G~~~~~~~G--iipr--~~~~lF~~i~~ 132 (366)
T 2zfi_A 88 GYNVCIFAYGQTGAGKSYTMMGKQEKDQQG--IIPQ--LCEDLFSRIND 132 (366)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBCSGGGCBC--HHHH--HHHHHHHHHHT
T ss_pred CCeeEEEEeCCCCCCCceEeeCCCccCCCc--cHHH--HHHHHHHHHhh
Confidence 346677789999999998753211111122 2343 35667776664
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=66.53 E-value=3.5 Score=34.09 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=16.5
Q ss_pred ceEEEEccCCCchHHHHHHHH
Q 010534 78 KVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 78 ~~~iv~~pTGsGKT~~~~~~l 98 (508)
-.+++.|++|+|||+..-..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998754443
No 480
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=66.41 E-value=7.7 Score=42.03 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=24.6
Q ss_pred CceEEEEccCCCchHHHHHHHHHcCCCEEEEcc
Q 010534 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGP 109 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~~~~~~i~l~P 109 (508)
.+.+++.||.|+|||+.|-....+.+..++.+-
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 567899999999999987666656565555443
No 481
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.23 E-value=3 Score=40.50 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=16.0
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 105 ~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 105 YNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CceEEEEeCCCCCCceeee
Confidence 4666788999999999985
No 482
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=66.18 E-value=3.3 Score=40.23 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 103 ~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 103 YNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CceEEEEECCCCCCCceEe
Confidence 4566777999999999985
No 483
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=66.14 E-value=1.8 Score=42.22 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
.+..+.+.||.|||||+..
T Consensus 30 ~Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFM 48 (353)
T ss_dssp TTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999974
No 484
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=66.01 E-value=3.3 Score=40.71 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=15.8
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 98 ~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 98 QNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CCEEEEEESCTTSSHHHHH
T ss_pred ceeeEeeecCCCCCCCeEe
Confidence 4566777999999999875
No 485
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.87 E-value=2.9 Score=41.43 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=16.0
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|.||||||+...
T Consensus 154 ~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 154 GKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp CEEEEEEEESTTSSHHHHHH
T ss_pred CceeEEeecCCCCCCCeEee
Confidence 35667779999999999853
No 486
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=65.87 E-value=2.8 Score=45.38 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=17.2
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
...++++.||+|+|||+.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 5788999999999999985
No 487
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=65.85 E-value=3.8 Score=34.45 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=17.1
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
...+++.|++|+|||+..-...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 3568999999999998654443
No 488
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.79 E-value=3.4 Score=40.42 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.1
Q ss_pred cCCceEEEEccCCCchHHHHH
Q 010534 75 KVRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 75 ~~~~~~iv~~pTGsGKT~~~~ 95 (508)
.-+-.++..|.||||||+...
T Consensus 99 G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 99 GYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TCCEEEEEECSTTSSHHHHHT
T ss_pred CceEEEEeecCCCCCcceecc
Confidence 356778889999999998753
No 489
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=65.69 E-value=27 Score=32.76 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=55.2
Q ss_pred CCCchHHHHHHHH--HcCCCEEEEcchHHHHHHHHHHHHhCCCceeeeccccccc----------cCCCcEEEEcce--e
Q 010534 86 TNSGKTHQALSRL--ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVE--M 151 (508)
Q Consensus 86 TGsGKT~~~~~~l--~~~~~~i~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e--~ 151 (508)
+...|-.+....+ ...+++|+.++++.-+..+++.+.+.|+.+..++|+.... .....++++|.- .
T Consensus 11 ~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~ 90 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAAR 90 (300)
T ss_dssp CSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhc
Confidence 3356766654443 3467899999999999999999999999999999974322 124667888852 2
Q ss_pred ccccCCccEEEE
Q 010534 152 ADVVSDYDCAVI 163 (508)
Q Consensus 152 ~~~l~~~~~iVi 163 (508)
--.+..+++||.
T Consensus 91 Gidi~~v~~VI~ 102 (300)
T 3i32_A 91 GLDIPQVDLVVH 102 (300)
T ss_dssp STTCCCCSEEEE
T ss_pred CccccceeEEEE
Confidence 223467787774
No 490
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.61 E-value=3.5 Score=40.93 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|+||||||+..
T Consensus 138 ~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 138 YNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCeeEe
Confidence 4666788999999999986
No 491
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=65.57 E-value=2.9 Score=40.79 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=15.4
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
-+-.++..|.||||||+..
T Consensus 79 ~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp CEEEEEEEECTTSSHHHHH
T ss_pred CceEEEEECCCCCCCeEee
Confidence 4556677999999999885
No 492
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=65.56 E-value=2.4 Score=43.94 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=17.3
Q ss_pred CCceEEEEccCCCchHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQA 94 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~ 94 (508)
++..+++.|+.|||||+.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLa 386 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLA 386 (552)
T ss_dssp SCEEEEEEESSCHHHHHHH
T ss_pred cceEEEEECCCCChHHHHH
Confidence 5789999999999999985
No 493
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=65.24 E-value=4.4 Score=49.91 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCceEEEEccCCCchHHHHHHHHHcC
Q 010534 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~~~l~~~ 101 (508)
.++.++++||||+|||..+-..+...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999886666554
No 494
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=65.12 E-value=3.8 Score=40.91 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.8
Q ss_pred CceEEEEccCCCchHHH--HHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQ--ALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~--~~~~l~ 99 (508)
+..+++.||+|||||+. ++..+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 68899999999999998 455544
No 495
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.07 E-value=3 Score=40.56 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.9
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|.||||||+...
T Consensus 88 ~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 88 YNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp CEEEEEEEECTTSSHHHHHT
T ss_pred CceEEEEeCCCCCCCceEEe
Confidence 35566779999999999763
No 496
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=64.86 E-value=3.1 Score=40.53 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=14.5
Q ss_pred eEEEEccCCCchHHHHH
Q 010534 79 VILHVGPTNSGKTHQAL 95 (508)
Q Consensus 79 ~~iv~~pTGsGKT~~~~ 95 (508)
.++..|.||||||+...
T Consensus 87 tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 87 SCFAYGQTGSGKTYTML 103 (360)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEeeCCCCCCCCEEEe
Confidence 36889999999998864
No 497
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=64.44 E-value=3.2 Score=40.73 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCceEEEEccCCCchHHHHH
Q 010534 76 VRKVILHVGPTNSGKTHQAL 95 (508)
Q Consensus 76 ~~~~~iv~~pTGsGKT~~~~ 95 (508)
-+-.++..|.||||||+...
T Consensus 134 ~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 134 GKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp CEEEEEEESCTTSSHHHHHC
T ss_pred CceEEEEecCCCCCCCeEec
Confidence 35667779999999999853
No 498
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=63.93 E-value=2.8 Score=44.00 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCeeEEEecccccccccccccEEEEc
Q 010534 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (508)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~l---hg~l~~~~R~~~~~~f~~-~~g~~~ilVaT~~~~~Gidipv~~VI~~ 315 (508)
.+.--.+++.|-..+ ++..+ .++++++.+..+.+.+++ ..+.. +|+.|--.+. +. .++.|+..
T Consensus 488 q~qrv~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~t-vi~itH~~~~-~~-~~d~i~~l 554 (595)
T 2yl4_A 488 QKQRIAIARALLKNP--KILLLDEATSALDAENEYLVQEALDRLMDGRT-VLVIAHRLST-IK-NANMVAVL 554 (595)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCCSSCCHHHHHHHHHHHHHHHTTSE-EEEECCCHHH-HH-HSSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECcccCCCHHHHHHHHHHHHHHhcCCE-EEEEecCHHH-HH-cCCEEEEE
Confidence 555567788876654 46666 478999988877776654 12544 4444433332 12 26666654
No 499
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=63.58 E-value=4.4 Score=33.56 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=16.9
Q ss_pred CceEEEEccCCCchHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRL 98 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l 98 (508)
.-.+++.|++|+|||+..-..+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999998754433
No 500
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=63.57 E-value=4.5 Score=34.79 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=18.2
Q ss_pred CceEEEEccCCCchHHHHHHHHH
Q 010534 77 RKVILHVGPTNSGKTHQALSRLE 99 (508)
Q Consensus 77 ~~~~iv~~pTGsGKT~~~~~~l~ 99 (508)
.-.+++.|++|+|||+..-....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999987655443
Done!