Query 010536
Match_columns 508
No_of_seqs 179 out of 2273
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 5.4E-61 1.9E-65 499.4 41.7 402 38-508 14-431 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.8E-61 6.1E-66 501.6 34.4 416 20-508 3-426 (536)
3 1v25_A Long-chain-fatty-acid-C 100.0 5.9E-60 2E-64 490.5 42.7 396 42-508 17-427 (541)
4 3rix_A Luciferase, luciferin 4 100.0 1.1E-60 3.7E-65 497.2 36.9 409 36-508 13-431 (550)
5 3o83_A Peptide arylation enzym 100.0 3.4E-60 1.2E-64 492.5 38.5 393 42-508 29-431 (544)
6 3r44_A Fatty acyl COA syntheta 100.0 1.4E-60 4.9E-65 492.3 34.3 391 40-508 13-405 (517)
7 3etc_A AMP-binding protein; ad 100.0 5E-60 1.7E-64 493.9 38.2 400 39-508 52-467 (580)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3E-60 1E-64 492.5 33.9 390 42-508 24-422 (539)
9 2d1s_A Luciferase, luciferin 4 100.0 3.6E-59 1.2E-63 485.0 37.0 414 22-508 8-433 (548)
10 3ivr_A Putative long-chain-fat 100.0 6.2E-59 2.1E-63 479.9 37.7 384 41-508 4-390 (509)
11 3c5e_A Acyl-coenzyme A synthet 100.0 1.1E-58 3.6E-63 483.2 39.0 397 40-508 35-448 (570)
12 3t5a_A Long-chain-fatty-acid-- 100.0 1.1E-59 3.8E-64 482.5 29.4 394 41-508 22-474 (480)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.8E-58 6.1E-63 475.6 36.8 379 42-508 1-394 (504)
14 1pg4_A Acetyl-COA synthetase; 100.0 7.2E-59 2.4E-63 491.8 34.5 409 42-508 75-509 (652)
15 4gr5_A Non-ribosomal peptide s 100.0 9.7E-59 3.3E-63 484.4 34.4 374 40-508 72-461 (570)
16 4fuq_A Malonyl COA synthetase; 100.0 6.3E-59 2.2E-63 478.4 31.5 385 47-508 4-391 (503)
17 1ry2_A Acetyl-coenzyme A synth 100.0 1.3E-58 4.5E-63 489.9 33.1 410 42-508 81-518 (663)
18 2v7b_A Benzoate-coenzyme A lig 100.0 3.3E-58 1.1E-62 476.7 35.2 396 40-508 21-421 (529)
19 4dg8_A PA1221; ANL superfamily 100.0 1E-57 3.5E-62 479.1 35.6 371 41-508 25-411 (620)
20 3rg2_A Enterobactin synthase c 100.0 1.3E-57 4.4E-62 480.1 36.5 393 41-508 25-426 (617)
21 3tsy_A Fusion protein 4-coumar 100.0 2.5E-57 8.4E-62 502.0 35.2 420 21-508 43-473 (979)
22 1amu_A GRSA, gramicidin synthe 100.0 5.2E-57 1.8E-61 469.8 34.6 373 41-508 37-422 (563)
23 3l8c_A D-alanine--poly(phospho 100.0 2E-57 6.7E-62 470.2 31.1 377 42-508 3-395 (521)
24 3fce_A D-alanine--poly(phospho 100.0 8.2E-58 2.8E-62 471.8 27.8 376 43-508 1-391 (512)
25 3e7w_A D-alanine--poly(phospho 100.0 4.2E-57 1.4E-61 466.2 32.4 375 43-508 1-390 (511)
26 3ite_A SIDN siderophore synthe 100.0 2.7E-56 9.3E-61 465.7 34.8 391 40-508 17-419 (562)
27 3kxw_A Saframycin MX1 syntheta 100.0 6.7E-57 2.3E-61 473.5 29.3 392 40-508 8-450 (590)
28 3gqw_A Fatty acid AMP ligase; 100.0 5.5E-56 1.9E-60 465.5 33.7 397 33-508 11-453 (576)
29 3ipl_A 2-succinylbenzoate--COA 100.0 2E-56 7E-61 460.3 29.7 385 44-508 2-390 (501)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 1.1E-56 3.7E-61 461.8 27.3 374 40-508 19-397 (505)
31 2vsq_A Surfactin synthetase su 100.0 3.5E-53 1.2E-57 480.2 38.6 376 42-508 463-853 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.2E-34 1.1E-38 280.8 13.8 208 219-508 36-243 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 5.1E-32 1.7E-36 273.4 21.2 230 216-507 81-313 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.6E-31 5.4E-36 269.9 24.1 245 200-508 72-320 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2.2E-31 7.4E-36 269.3 23.0 246 199-508 73-322 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.3E-29 1.8E-33 245.6 18.6 228 217-499 88-350 (369)
37 4eql_A 4-substituted benzoates 96.8 0.044 1.5E-06 55.6 16.8 31 218-248 91-122 (581)
38 4b2g_A GH3-1 auxin conjugating 95.9 0.099 3.4E-06 53.2 13.8 31 218-248 97-128 (609)
39 4epl_A Jasmonic acid-amido syn 95.3 0.063 2.1E-06 54.4 9.6 30 218-247 96-126 (581)
40 2y27_A Phenylacetate-coenzyme 91.9 1.2 4.1E-05 43.7 11.7 125 56-183 88-221 (437)
41 2y4o_A Phenylacetate-coenzyme 91.1 1.4 4.7E-05 43.3 11.2 125 56-183 90-223 (443)
42 3qov_A Phenylacetate-coenzyme 90.3 1.6 5.3E-05 42.8 10.8 124 58-184 86-218 (436)
43 3ipl_A 2-succinylbenzoate--COA 85.5 12 0.00042 37.1 14.0 122 56-183 161-285 (501)
44 3hgu_A EHPF; phenazine, antibi 80.0 7.1 0.00024 37.0 9.3 104 56-163 89-219 (369)
45 1mdb_A 2,3-dihydroxybenzoate-A 77.9 35 0.0012 34.1 14.2 122 56-183 180-309 (539)
46 2d1s_A Luciferase, luciferin 4 76.7 17 0.00059 36.5 11.5 122 58-183 192-320 (548)
47 3g7s_A Long-chain-fatty-acid-- 68.9 55 0.0019 32.7 13.1 106 219-328 33-140 (549)
48 3o83_A Peptide arylation enzym 68.5 32 0.0011 34.4 11.2 122 56-183 189-318 (544)
49 4gr5_A Non-ribosomal peptide s 68.4 22 0.00077 35.9 10.1 124 56-185 212-339 (570)
50 3ni2_A 4-coumarate:COA ligase; 67.9 50 0.0017 32.9 12.5 101 218-328 35-137 (536)
51 3ivr_A Putative long-chain-fat 67.6 46 0.0016 32.9 12.1 98 219-328 20-119 (509)
52 4dg8_A PA1221; ANL superfamily 67.0 28 0.00096 35.7 10.5 124 56-185 162-289 (620)
53 3kxw_A Saframycin MX1 syntheta 66.2 41 0.0014 34.0 11.6 123 56-183 165-300 (590)
54 3rix_A Luciferase, luciferin 4 66.2 36 0.0012 34.1 11.0 124 57-183 189-318 (550)
55 3r44_A Fatty acyl COA syntheta 65.9 32 0.0011 34.2 10.5 120 57-183 169-295 (517)
56 3fce_A D-alanine--poly(phospho 65.3 36 0.0012 33.7 10.8 123 56-183 142-272 (512)
57 1v25_A Long-chain-fatty-acid-C 64.8 70 0.0024 31.9 12.9 100 219-326 32-133 (541)
58 3e7w_A D-alanine--poly(phospho 63.0 57 0.0019 32.2 11.7 123 56-183 141-271 (511)
59 3rg2_A Enterobactin synthase c 62.8 84 0.0029 31.9 13.2 123 56-184 182-314 (617)
60 3c5e_A Acyl-coenzyme A synthet 61.5 75 0.0026 32.0 12.4 124 56-184 204-334 (570)
61 3t5a_A Long-chain-fatty-acid-- 59.9 93 0.0032 30.2 12.6 107 218-328 37-148 (480)
62 1t5h_X 4-chlorobenzoyl COA lig 59.7 85 0.0029 30.9 12.3 98 219-326 16-117 (504)
63 3tbh_A O-acetyl serine sulfhyd 58.9 48 0.0017 30.8 9.6 65 94-158 62-127 (334)
64 1amu_A GRSA, gramicidin synthe 58.0 94 0.0032 31.2 12.4 85 238-325 63-149 (563)
65 1ry2_A Acetyl-coenzyme A synth 57.4 82 0.0028 32.4 12.0 99 218-322 95-196 (663)
66 2v7b_A Benzoate-coenzyme A lig 53.0 61 0.0021 32.2 10.0 87 238-327 47-135 (529)
67 3vc3_A Beta-cyanoalnine syntha 52.9 71 0.0024 29.8 9.7 70 89-158 73-142 (344)
68 3etc_A AMP-binding protein; ad 50.8 93 0.0032 31.3 11.0 98 218-322 69-168 (580)
69 4fuq_A Malonyl COA synthetase; 50.6 73 0.0025 31.4 10.0 86 238-326 27-114 (503)
70 1pg4_A Acetyl-COA synthetase; 50.1 1.2E+02 0.004 31.2 11.8 98 219-322 90-189 (652)
71 4gs5_A Acyl-COA synthetase (AM 49.8 52 0.0018 30.8 8.4 121 54-182 33-158 (358)
72 3nyq_A Malonyl-COA ligase; A/B 46.4 1E+02 0.0036 30.2 10.4 103 56-165 153-259 (505)
73 3tsy_A Fusion protein 4-coumar 46.1 1.1E+02 0.0036 33.3 11.2 99 218-326 74-174 (979)
74 3ist_A Glutamate racemase; str 45.7 60 0.0021 29.1 7.6 63 47-116 19-81 (269)
75 3ezx_A MMCP 1, monomethylamine 43.4 1.6E+02 0.0053 25.2 10.6 117 238-403 64-195 (215)
76 2q3b_A Cysteine synthase A; py 38.8 1.7E+02 0.0057 26.6 9.8 64 94-158 58-122 (313)
77 4eez_A Alcohol dehydrogenase 1 38.6 83 0.0028 29.1 7.8 76 78-156 137-215 (348)
78 3gqw_A Fatty acid AMP ligase; 37.8 1.9E+02 0.0065 28.7 10.9 87 238-327 48-143 (576)
79 3ju7_A Putative PLP-dependent 37.3 89 0.0031 29.4 7.9 60 93-155 69-135 (377)
80 3l8c_A D-alanine--poly(phospho 37.0 1E+02 0.0036 30.3 8.7 81 238-321 28-110 (521)
81 2vsq_A Surfactin synthetase su 35.3 82 0.0028 35.6 8.3 123 56-184 605-732 (1304)
82 2egu_A Cysteine synthase; O-ac 34.9 1.9E+02 0.0065 26.2 9.5 64 94-158 56-120 (308)
83 3ite_A SIDN siderophore synthe 34.7 1.7E+02 0.0057 29.1 9.9 107 76-183 193-305 (562)
84 1ve1_A O-acetylserine sulfhydr 32.9 2.7E+02 0.0093 25.0 10.2 63 95-158 52-117 (304)
85 2v03_A Cysteine synthase B; py 32.9 2.7E+02 0.0093 25.1 10.2 63 95-158 53-116 (303)
86 3out_A Glutamate racemase; str 32.4 1.7E+02 0.0057 26.1 8.3 62 48-116 22-83 (268)
87 3uhf_A Glutamate racemase; str 32.3 1E+02 0.0034 27.7 6.8 63 47-116 38-100 (274)
88 4aec_A Cysteine synthase, mito 31.8 2.3E+02 0.0078 27.3 9.7 63 95-157 166-229 (430)
89 1z7w_A Cysteine synthase; tran 31.1 2.6E+02 0.009 25.4 9.8 64 95-158 58-122 (322)
90 2pqm_A Cysteine synthase; OASS 30.7 2.1E+02 0.0071 26.5 9.1 62 96-158 71-133 (343)
91 3tqh_A Quinone oxidoreductase; 29.7 1.9E+02 0.0064 26.3 8.6 74 78-156 126-203 (321)
92 2gzm_A Glutamate racemase; enz 29.7 2E+02 0.0069 25.4 8.5 62 47-115 17-78 (267)
93 3goh_A Alcohol dehydrogenase, 29.0 1.5E+02 0.005 26.9 7.7 72 78-154 116-190 (315)
94 3dwg_A Cysteine synthase B; su 28.8 2.9E+02 0.01 25.2 9.7 63 95-158 65-128 (325)
95 4h1h_A LMO1638 protein; MCCF-l 28.6 1.2E+02 0.0041 28.0 6.9 61 98-158 8-87 (327)
96 1h2b_A Alcohol dehydrogenase; 27.2 2.2E+02 0.0076 26.3 8.7 62 93-157 176-239 (359)
97 3ri6_A O-acetylhomoserine sulf 27.0 2.1E+02 0.0071 27.5 8.6 62 106-167 100-164 (430)
98 1o69_A Aminotransferase; struc 26.8 2.4E+02 0.0082 26.3 9.0 61 94-157 64-130 (394)
99 1eg5_A Aminotransferase; PLP-d 26.3 2.1E+02 0.0072 26.3 8.5 32 101-132 88-119 (384)
100 2e7j_A SEP-tRNA:Cys-tRNA synth 26.2 3.1E+02 0.011 24.9 9.7 56 99-157 90-155 (371)
101 3s2e_A Zinc-containing alcohol 26.2 2.1E+02 0.0073 26.1 8.4 75 78-156 140-217 (340)
102 3jv7_A ADH-A; dehydrogenase, n 25.7 2.2E+02 0.0074 26.2 8.3 78 78-158 143-225 (345)
103 3two_A Mannitol dehydrogenase; 25.6 2E+02 0.0068 26.5 8.1 73 78-154 150-225 (348)
104 1zsy_A Mitochondrial 2-enoyl t 25.5 3E+02 0.01 25.4 9.3 78 78-156 140-223 (357)
105 1zuw_A Glutamate racemase 1; ( 25.4 2.4E+02 0.0081 25.1 8.1 62 47-115 17-79 (272)
106 3a2b_A Serine palmitoyltransfe 25.0 3.8E+02 0.013 24.8 10.1 55 99-157 124-181 (398)
107 3dzz_A Putative pyridoxal 5'-p 24.9 2.2E+02 0.0074 26.4 8.3 55 99-156 106-167 (391)
108 3ijw_A Aminoglycoside N3-acety 24.6 47 0.0016 29.7 3.1 25 88-112 18-42 (268)
109 3sma_A FRBF; N-acetyl transfer 23.1 53 0.0018 29.7 3.1 30 76-112 20-49 (286)
110 3krt_A Crotonyl COA reductase; 22.9 2.5E+02 0.0085 27.1 8.4 75 78-156 199-280 (456)
111 2nyg_A YOKD protein; PFAM02522 22.9 53 0.0018 29.5 3.1 24 89-112 17-40 (273)
112 2jtq_A Phage shock protein E; 22.9 1.7E+02 0.0057 20.2 5.4 46 76-128 22-67 (85)
113 2jfq_A Glutamate racemase; cel 22.9 3.1E+02 0.011 24.5 8.4 62 47-115 36-97 (286)
114 3sr3_A Microcin immunity prote 22.8 2E+02 0.007 26.5 7.3 60 98-158 9-88 (336)
115 1mdo_A ARNB aminotransferase; 22.6 2.1E+02 0.0073 26.4 7.8 55 97-155 74-133 (393)
116 3tla_A MCCF; serine protease, 22.0 1.7E+02 0.0057 27.6 6.6 61 98-158 39-118 (371)
117 2vvt_A Glutamate racemase; iso 22.0 3.4E+02 0.011 24.3 8.5 64 46-116 37-100 (290)
118 3pc3_A CG1753, isoform A; CBS, 21.9 4.6E+02 0.016 25.8 10.3 61 96-157 106-167 (527)
119 2jfz_A Glutamate racemase; cel 21.8 1.7E+02 0.0057 25.7 6.3 60 48-114 15-74 (255)
120 3isl_A Purine catabolism prote 21.6 3.4E+02 0.011 25.2 9.0 58 99-157 83-144 (416)
121 1y7l_A O-acetylserine sulfhydr 21.6 4.4E+02 0.015 23.8 9.4 64 94-158 53-117 (316)
122 3b8x_A WBDK, pyridoxamine 5-ph 21.2 3.3E+02 0.011 25.2 8.8 55 98-156 76-135 (390)
123 4e5s_A MCCFLIKE protein (BA_56 21.2 2E+02 0.0069 26.5 6.9 61 98-158 8-87 (331)
124 2cf5_A Atccad5, CAD, cinnamyl 20.8 2.5E+02 0.0086 25.9 7.7 76 78-156 153-232 (357)
125 3l6b_A Serine racemase; pyrido 20.8 1.9E+02 0.0065 26.8 6.7 57 102-159 76-132 (346)
126 2ch1_A 3-hydroxykynurenine tra 20.4 3.7E+02 0.013 24.7 9.0 57 99-156 90-150 (396)
127 3fpc_A NADP-dependent alcohol 20.3 2E+02 0.0068 26.5 6.9 74 78-155 140-217 (352)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.4e-61 Score=499.37 Aligned_cols=402 Identities=22% Similarity=0.286 Sum_probs=338.3
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCC--CCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536 38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (508)
Q Consensus 38 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~--~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~ 115 (508)
.+....++.++|+++++++|+++|+++. ++. .+.++++||+||.++++++|++|.+.|+++||+|+++++|++++
T Consensus 14 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 14 LYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 3455689999999999999999999987 521 23447899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (508)
Q Consensus 116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (508)
+++++||+++|++++||+|.++.+++.++++.++++++|++......+....... ....++..+..
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------ 156 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------------ 156 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------------
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------------
Confidence 9999999999999999999999999999999999999999988777665544322 24455554322
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCC-CCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010536 196 VSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274 (508)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 274 (508)
...++++..............+ +++++|+|||||||.||||.++|+++...+......+ .+..+|++++.+|
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 --VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCMP 229 (549)
T ss_dssp --SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCSC
T ss_pred --CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeCc
Confidence 2356666655433223333334 8999999999999999999999999999998887776 7889999999999
Q ss_pred hHHHHHHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536 275 LAHIYDQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (508)
Q Consensus 275 l~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
++|.+++...+.++..|+++++.+ +++..+++.++++++|+++++|+++..|++........
T Consensus 230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------- 292 (549)
T 3g7s_A 230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT----------------- 292 (549)
T ss_dssp TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-----------------
T ss_pred HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-----------------
Confidence 999999888888999999999887 49999999999999999999999999987644322100
Q ss_pred hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHh----cC---CceeeecccccCCcceee
Q 010536 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGLTESCSGCFT 426 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~----~~---~~v~~~YG~TE~~~~~~~ 426 (508)
.++ +++|.+++||+++++++.+++.+. ++ ..+++.||+||++++++.
T Consensus 293 ------------------~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 346 (549)
T 3g7s_A 293 ------------------YDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT 346 (549)
T ss_dssp ------------------CCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEE
T ss_pred ------------------CCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhc
Confidence 011 389999999999999999999887 66 899999999999988877
Q ss_pred ccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc---cCC--ccccCcEE
Q 010536 427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI---VDG--WFHTGDIG 501 (508)
Q Consensus 427 ~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~---~~g--w~~TGDlg 501 (508)
.........+++|+|+++++++|+|.+++..++. |+.|||+|+|++++.||+++++.+.+.| .+| ||+|||+|
T Consensus 347 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~ 424 (549)
T 3g7s_A 347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGV--GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG 424 (549)
T ss_dssp CCGGGGGGTTSCCEECTTCEEEEECSSSCCEECT--TCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEE
T ss_pred CCccccCcCCCccccCCCCEEEEEeCCCCcCCCC--CCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEE
Confidence 6655545558999999999999999666665554 4999999999999999999999999998 677 99999999
Q ss_pred EEcCCCC
Q 010536 502 EWQPMEL 508 (508)
Q Consensus 502 ~~d~dG~ 508 (508)
++|+||+
T Consensus 425 ~~~~dG~ 431 (549)
T 3g7s_A 425 FIDEEGF 431 (549)
T ss_dssp EECTTSC
T ss_pred EEcCCce
Confidence 9999995
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.8e-61 Score=501.57 Aligned_cols=416 Identities=22% Similarity=0.298 Sum_probs=337.4
Q ss_pred CCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCC
Q 010536 20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99 (508)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv 99 (508)
|+...+|++......++. ..++.++|.++++++|+++|+++. ++. +.+||+||.++++++|++|.+.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 345667887776544442 478999999999999999999875 332 689999999999999999999999
Q ss_pred CCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEE
Q 010536 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179 (508)
Q Consensus 100 ~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (508)
++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+.+..... .. .++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence 99999999999999999999999999999999999999999999999999999999987766654433211 11 3334
Q ss_pred ecCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhc
Q 010536 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259 (508)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~ 259 (508)
++... .....++++..............++++++|+|||||||.||||.++|++++..+........ .
T Consensus 149 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~ 216 (536)
T 3ni2_A 149 VDSAP-----------DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P 216 (536)
T ss_dssp SSCCC-----------TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred ecCCC-----------CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence 33221 12345666655443333444567899999999999999999999999999988766433210 0
Q ss_pred cccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcC
Q 010536 260 GKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337 (508)
Q Consensus 260 ~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 337 (508)
...+..++++++.+|++|.+++.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+++.
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------- 288 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-------- 288 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC--------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC--------
Confidence 125678999999999999999964 778999999999987 4999999999999999999999999988641
Q ss_pred ChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecc
Q 010536 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYG 416 (508)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG 416 (508)
+..+..++ +++|.+++||+++++++.+++++.+ +..+++.||
T Consensus 289 -----------------------------~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 289 -----------------------------PDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp -----------------------------SCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred -----------------------------cccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 11111222 3899999999999999999999998 899999999
Q ss_pred cccCCcceeecc----CCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-c
Q 010536 417 LTESCSGCFTSL----ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V 491 (508)
Q Consensus 417 ~TE~~~~~~~~~----~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~ 491 (508)
+||++++++... .......+++|+|+++++++|+|.+++..++. |+.|||+|+|++++.||+++++.+.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPR--NQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCT--TCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCC--CCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999998766542 12233458999999999999999444555554 5999999999999999999999999999 7
Q ss_pred CCccccCcEEEEcCCCC
Q 010536 492 DGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 492 ~gw~~TGDlg~~d~dG~ 508 (508)
+|||+|||+|++|+||+
T Consensus 410 ~g~~~TGDl~~~~~dG~ 426 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDDDE 426 (536)
T ss_dssp TSCEEEEEEEEECTTSC
T ss_pred CCceEcccEEEEcCCce
Confidence 89999999999999995
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.9e-60 Score=490.45 Aligned_cols=396 Identities=23% Similarity=0.327 Sum_probs=327.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
..++.++|+++++++|+++|+++. +. +..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 22 2237899999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
|+++|++++|++|.++.+++.++++.++++++|++......+..... ..+.++.++.++.... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------cccccH
Confidence 99999999999999999999999999999999999877665544332 2234555665543321 012356
Q ss_pred HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHHH
Q 010536 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (508)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (508)
+++...... .....++++++|+|||||||.||||.++|+++....... ...+ .+..+|++++.+|++|.+
T Consensus 161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 665433311 134567899999999999999999999999998776552 2222 677899999999999999
Q ss_pred HHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536 280 DQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (508)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..|++.......
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 290 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH---------------------- 290 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC----------------------
Confidence 9877788999999999986 3999999999999999999999999998764332110
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC------
Q 010536 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------ 431 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------ 431 (508)
++ +++|.+++||+++++++.+++ +.+|+.+++.||+||++.+++......
T Consensus 291 ---------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 346 (541)
T 1v25_A 291 ---------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 346 (541)
T ss_dssp ---------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred ---------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccC
Confidence 01 389999999999999999999 567999999999999998777654331
Q ss_pred ----CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-CCccccCcEEEEcCC
Q 010536 432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQPM 506 (508)
Q Consensus 432 ----~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-~gw~~TGDlg~~d~d 506 (508)
....+++|+|+|+++++|+| +++..++.+.++.|||+|+||+++.||+++|+.+.+.|. +|||+|||+|++|+|
T Consensus 347 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d 425 (541)
T 1v25_A 347 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425 (541)
T ss_dssp HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred ccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence 02347899999999999999 888877754457899999999999999999999999995 999999999999999
Q ss_pred CC
Q 010536 507 EL 508 (508)
Q Consensus 507 G~ 508 (508)
|+
T Consensus 426 G~ 427 (541)
T 1v25_A 426 GY 427 (541)
T ss_dssp CC
T ss_pred ce
Confidence 95
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.1e-60 Score=497.21 Aligned_cols=409 Identities=22% Similarity=0.329 Sum_probs=328.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536 36 LESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (508)
Q Consensus 36 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~ 115 (508)
+..+....|+.++|.++++++|+++|++... ++..+ +.+||+||.++++++|++|+++|+++||+|+++++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 3445566899999999999999999986220 11111 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (508)
Q Consensus 116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (508)
+++++||+++|++++|++|.++.+++.++++.++++++|++......+..... ..+.+..++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccc---------
Confidence 99999999999999999999999999999999999999999887766654432 22445666665543211
Q ss_pred ceeeeHHHHHhcCCC------CCCC-CCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcE
Q 010536 196 VSCFSWEEFLQLGTL------DCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT 268 (508)
Q Consensus 196 ~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
.....+.++...... ...+ ....++++++|+|||||||.||||.++|+++...+......+ .......+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 123455555543211 1111 122457899999999999999999999999998877655432 1125678999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536 269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (508)
Q Consensus 269 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (508)
+++.+|++|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+++.
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------ 298 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS------------------ 298 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC------------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC------------------
Confidence 999999999999988888999999999986 4999999999999999999999999998652
Q ss_pred HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCc-eeeecccccCCcceee
Q 010536 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFT 426 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~ 426 (508)
...+..++ +++|.+++||+++++++.+++.+.++.. +++.||+||+++.++.
T Consensus 299 -------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 299 -------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp -------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred -------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11112222 3899999999999999999999999875 9999999999988776
Q ss_pred ccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcC
Q 010536 427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 505 (508)
Q Consensus 427 ~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~ 505 (508)
...... ..+++|+|+|+++++|+|.+++..++ .|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTGKTLG--VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEeCCCCcCCC--CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 655443 44899999999999999944455444 45999999999999999999999999999 799999999999999
Q ss_pred CCC
Q 010536 506 MEL 508 (508)
Q Consensus 506 dG~ 508 (508)
||+
T Consensus 429 dG~ 431 (550)
T 3rix_A 429 DEH 431 (550)
T ss_dssp TCC
T ss_pred Cce
Confidence 995
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.4e-60 Score=492.55 Aligned_cols=393 Identities=15% Similarity=0.184 Sum_probs=326.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
..++.++|+++++++|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999865 3 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (508)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++.......
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999886531 111112222234455555543311
Q ss_pred eeeHHHHHhcCCC-CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536 198 CFSWEEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (508)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 276 (508)
...+.++...... ........++++++|+|||||||.||||.++|+++...+......+ .+..+|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 1234444443321 2222455789999999999999999999999999999999888777 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (508)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++...
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 300 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA---------------------- 300 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT----------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchh----------------------
Confidence 9999874 7789999999999874 99999999999999999999999999876321
Q ss_pred hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCc
Q 010536 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~ 433 (508)
....++ +++|.+++||+++++++.+++.+.+|..+++.||+||++..+.........
T Consensus 301 ---------------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 301 ---------------QYKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ---------------TTHHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ---------------hccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 112223 389999999999999999999999999999999999987554433333333
Q ss_pred ccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536 434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 434 ~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~ 508 (508)
..+++|+|+ ++++++|+| +++..++.| +.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~ 431 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN 431 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSC
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCC
Confidence 347899996 899999999 888877655 899999999999999999999999999 799999999999999985
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.4e-60 Score=492.33 Aligned_cols=391 Identities=22% Similarity=0.304 Sum_probs=324.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~ 119 (508)
+...|+.++|+++++++|+++|+++. +.. +.+||+||.++++++|.+|.++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 45689999999999999999999876 332 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (508)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (508)
+||+++|++++||+|.++.+++.++++.++++++|++......+....... .....++.... ..
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999987665554332211 11111111100 01
Q ss_pred eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (508)
.+.+...............++++++|+|||||||.||||.++|+++...+......+ .+..+|++++.+|++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 224 (517)
T 3r44_A 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA 224 (517)
T ss_dssp HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence 234444433333344456789999999999999999999999999999998887776 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536 280 DQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (508)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
++...+.+++.|+++++.+ +++..+++.++++++|++.++|+++..|.+...
T Consensus 225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 277 (517)
T 3r44_A 225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--------------------------- 277 (517)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH---------------------------
T ss_pred HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---------------------------
Confidence 9987666666999998887 499999999999999999999999999865221
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-CcccCc
Q 010536 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGT 437 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~s 437 (508)
....++ +++|.+++||+++++++.+++.+. +..+++.||+||+++.++...... ....++
T Consensus 278 ----------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 338 (517)
T 3r44_A 278 ----------FAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGS 338 (517)
T ss_dssp ----------HHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTC
T ss_pred ----------cccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCC
Confidence 111112 389999999999999999999987 999999999999988776654433 344589
Q ss_pred cccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 438 ~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 508 (508)
+|+|+++++++|+| +++..++.+ .|||+|+|++++.||+++|+.+.+.|.+|||+|||+|++|+||+
T Consensus 339 ~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~ 405 (517)
T 3r44_A 339 AGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGY 405 (517)
T ss_dssp CBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSC
T ss_pred CCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCee
Confidence 99999999999999 777766554 79999999999999999999999999999999999999999985
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5e-60 Score=493.89 Aligned_cols=400 Identities=18% Similarity=0.193 Sum_probs=329.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536 39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (508)
Q Consensus 39 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~ 118 (508)
+...+.+.++|+++|+++|+++|+++. +. .+..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 345667779999999999999999986 43 23447899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh--hhHhhcCccCCCCc-cEEEEecCCCchhhhhhhhcC
Q 010536 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELG 195 (508)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 195 (508)
++||+++|++++|++|.++.+++.++++.++++++|++.+.. ..+.+.... ++.+ ..++.++... .
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAE-CGDIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHH-HCSCCCEEEEESSSC----------C
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhh-CCCcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999999999988754 333332221 1222 3444443221 1
Q ss_pred ceeeeHHHHHhcCCCCCC-C---CCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010536 196 VSCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271 (508)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (508)
..+.++.+.......... + ....++++++|+|||||||.||+|.++|.+++..+......+ .+..++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 234567766655422111 1 245789999999999999999999999999888776644433 7788999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536 272 FLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (508)
Q Consensus 272 ~~pl~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (508)
..|+.|..+... ++.++..|+++++.+ +++..+++.++++++|+++++|++++.|++.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------ 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS------------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc------------------
Confidence 999999888774 778899999998873 4899999999999999999999999988541
Q ss_pred HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeec
Q 010536 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 427 (508)
.....++ ++||.+++||+++++++.++|.+.+|+.+++.||+||+++.++..
T Consensus 334 --------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 334 --------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp --------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred --------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 1111222 389999999999999999999998999999999999998766554
Q ss_pred cCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec-----CcccccccCCcccccccccCCccccCcEEE
Q 010536 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-----NTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 502 (508)
Q Consensus 428 ~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g-----~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~ 502 (508)
... ....+++|+|+|+++++|+| ++|+.++.| +.|||+|+| +.++.||+++|+.+.+.|.+|||+|||+|+
T Consensus 386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 386 PWM-EPKPGSIGKPTPGYKIELMD-RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp TTS-CCCTTCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred CCC-CCCCCccccCCCCCEEEEEC-CCCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 433 34458999999999999999 888877655 899999997 789999999999999999999999999999
Q ss_pred EcCCCC
Q 010536 503 WQPMEL 508 (508)
Q Consensus 503 ~d~dG~ 508 (508)
+|+||+
T Consensus 462 ~d~dG~ 467 (580)
T 3etc_A 462 MDEDGY 467 (580)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 999996
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3e-60 Score=492.49 Aligned_cols=390 Identities=18% Similarity=0.196 Sum_probs=318.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
..++.++|+++++++|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 478999999999999999999865 3 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (508)
|+++|++++|++|.++.+++.++++.++++++|+++.... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111233444444332110
Q ss_pred eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 277 (508)
+.++..............++++++|+|||||||.||||.++|+++...+......+ .+..++++++.+|++|
T Consensus 163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (539)
T ss_dssp ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence 11111111111122345678999999999999999999999999999988877766 7789999999999999
Q ss_pred HHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536 278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (508)
Q Consensus 278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
.+++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------- 294 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR-------------------- 294 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC--------------------
Confidence 999874 7889999999999874 99999999999999999999999999876432110
Q ss_pred hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~ 434 (508)
.++ ++||.+++||+++++++.+++++.+|..+++.||+||++..+..........
T Consensus 295 -----------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 349 (539)
T 1mdb_A 295 -----------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII 349 (539)
T ss_dssp -----------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred -----------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhc
Confidence 011 3899999999999999999999989999999999999654333211111223
Q ss_pred cCccccccCC-eEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536 435 IGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 435 ~~s~G~p~~~-~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~ 508 (508)
.+++|+|+++ .+++|+| +++..++.| +.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus 350 ~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~ 422 (539)
T 1mdb_A 350 VNTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422 (539)
T ss_dssp HHCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred CCCCCcccCCCceEEEEC-CCCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCc
Confidence 4789999976 5899999 888776655 899999999999999999999999999 699999999999999995
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.6e-59 Score=485.02 Aligned_cols=414 Identities=22% Similarity=0.313 Sum_probs=327.9
Q ss_pred CCcccccccccCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536 22 GGPVYRCIYAKDGLLESPAGLESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ti~~-~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~ 100 (508)
.+.+|++..+.... +...++.+ ++.++++++ +++|+++. +.. +.+||+||.++++++|.+|.+.|++
T Consensus 8 ~~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 75 (548)
T 2d1s_A 8 ENIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLV 75 (548)
T ss_dssp TTSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCC
T ss_pred cceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCC
Confidence 34556665533222 22358999 899999999 99999864 221 5799999999999999999999999
Q ss_pred CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010536 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (508)
Q Consensus 101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (508)
+||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+...... .+....++.+
T Consensus 76 ~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~ 154 (548)
T 2d1s_A 76 VDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVIL 154 (548)
T ss_dssp TTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEET
T ss_pred CCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999877665443211 1223445544
Q ss_pred cCCCchhhhhhhhcCceeeeHHHHHhcCCCC-CCCCCC------CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhh
Q 010536 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253 (508)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~ 253 (508)
+.... ......++++....... ...... ..+++++|+|||||||.||||.++|+++...+....
T Consensus 155 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~ 225 (548)
T 2d1s_A 155 DSKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225 (548)
T ss_dssp TCSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHT
T ss_pred CCccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhh
Confidence 33210 00123466665543111 111112 238999999999999999999999999998887765
Q ss_pred hhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHH
Q 010536 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 331 (508)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 331 (508)
..+. ...+..+|++++.+|++|.+++.. ++.++ .|+++++.+ +++..+++.++++++|+++++|+++..|++.
T Consensus 226 ~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-- 300 (548)
T 2d1s_A 226 DPIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-- 300 (548)
T ss_dssp CTTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC--
T ss_pred chhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC--
Confidence 5410 126678999999999999999876 55666 999999886 5999999999999999999999999998641
Q ss_pred HHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCc
Q 010536 332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP 410 (508)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~ 410 (508)
+..+..++ +++|.+++||+++++++.+++.+.+ +..
T Consensus 301 -----------------------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 337 (548)
T 2d1s_A 301 -----------------------------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPG 337 (548)
T ss_dssp -----------------------------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred -----------------------------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence 10111122 3899999999999999999999998 688
Q ss_pred eeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc
Q 010536 411 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490 (508)
Q Consensus 411 v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~ 490 (508)
+++.||+||++..++..... ....+++|+|+|+++++|+|.+++..++ +|+.|||+|+|++++.||+++++.+.+.|
T Consensus 338 i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 414 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLG--PNRRGEVCVKGPMLMKGYVNNPEATKELI 414 (548)
T ss_dssp CEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred eeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCC--CCCCeEEEECCHHHhhhhcCChHHhhhcc
Confidence 99999999998877664333 2344899999999999999944555554 45899999999999999999999999999
Q ss_pred -cCCccccCcEEEEcCCCC
Q 010536 491 -VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 491 -~~gw~~TGDlg~~d~dG~ 508 (508)
.+|||+|||+|++|+||+
T Consensus 415 ~~~g~~~TGDl~~~~~dG~ 433 (548)
T 2d1s_A 415 DEEGWLHTGDIGYYDEEKH 433 (548)
T ss_dssp CTTSCEEEEEEEEECTTCC
T ss_pred cCCcEEEccCEEEEcCCCe
Confidence 689999999999999995
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=6.2e-59 Score=479.86 Aligned_cols=384 Identities=21% Similarity=0.271 Sum_probs=319.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (508)
Q Consensus 41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l 120 (508)
...|+.++|+++++++|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4689999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (508)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (508)
||+++|++++||+|.++.+++.++++.++++++|++......+..... .......++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence 999999999999999999999999999999999999987776444432 2345556666543211 1
Q ss_pred HHHHHh-cCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536 201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (508)
Q Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (508)
+.++.. ............++++++|+|||||||.||||.++|+++...+......+ .+..+|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 112222 11222333456789999999999999999999999999999998887776 788999999999999999
Q ss_pred HHHHHHHHH-HcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536 280 DQIIETHCI-HKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358 (508)
Q Consensus 280 g~~~~~~~l-~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
++...+.++ ..|+.+++..+++..+++.++++++|+++++|+++..+++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------------------------- 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence 998766644 455555555569999999999999999999999999987531
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCCcccCc
Q 010536 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT 437 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s 437 (508)
...++ +++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++++++........ .+
T Consensus 267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~--~~ 322 (509)
T 3ivr_A 267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP--KS 322 (509)
T ss_dssp -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGST--TS
T ss_pred -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCC--Cc
Confidence 00111 278999999987 8888888888 89999999999999877765543322 46
Q ss_pred cccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 438 ~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 508 (508)
+|+|+++++++|+| +++..++.| +.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~ 390 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGY 390 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSC
T ss_pred ccccCCCcEEEEEC-CCCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCce
Confidence 99999999999999 888766655 899999999999999999999999999999999999999999985
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.1e-58 Score=483.20 Aligned_cols=397 Identities=17% Similarity=0.234 Sum_probs=327.4
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcH
Q 010536 40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP 113 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~-----~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~ 113 (508)
...+++.++|++++++ +|+++|+++. +. ++..+.+||+||.++++++|++|.+. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999999 9999999986 42 22347899999999999999999999 9999999999999999
Q ss_pred hHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhh
Q 010536 114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193 (508)
Q Consensus 114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (508)
+++++++||+++|++++|++|.++.+++.++++.++++++|++......+..... ..+.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999887766644332 2244555665543211
Q ss_pred cCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHH--HHhhhhhhhhhccccCCCCcEEEE
Q 010536 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS 271 (508)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 271 (508)
..+..++++..............++++++|+|||||||.||||.++|+ ++. ..... ..+ .+..+|++++
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~ 252 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT 252 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence 113456666654422223344567999999999999999999999999 544 33332 333 6788999999
Q ss_pred ecChHHHHHHH-HHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536 272 FLPLAHIYDQI-IETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF 347 (508)
Q Consensus 272 ~~pl~~~~g~~-~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (508)
.+|++|.+++. .++.++..|+++++.+ +++..+++.++++++|+++++|++++.|++..
T Consensus 253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 315 (570)
T 3c5e_A 253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD----------------- 315 (570)
T ss_dssp CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-----------------
T ss_pred cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-----------------
Confidence 99999999987 4778999999999885 49999999999999999999999999886410
Q ss_pred HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeec
Q 010536 348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~ 427 (508)
....++ +++|.+++||+++++++.++|.+.+|+.+++.||+||++..++..
T Consensus 316 ---------------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 366 (570)
T 3c5e_A 316 ---------------------LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVS 366 (570)
T ss_dssp ---------------------TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred ---------------------cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecC
Confidence 000011 389999999999999999999998899999999999998765544
Q ss_pred cCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEe-----cCcccccccCCcccccccccCCccccCcEEE
Q 010536 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLR-----GNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 502 (508)
Q Consensus 428 ~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~-----g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~ 502 (508)
... ....+++|+|+++++++|+| +++..++.| +.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|+
T Consensus 367 ~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~ 442 (570)
T 3c5e_A 367 KTM-KIKPGYMGTAASCYDVQIID-DKGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGI 442 (570)
T ss_dssp TTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEE
T ss_pred ccc-ccCCCcccccCCCceEEEEC-CCCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEE
Confidence 332 33458999999999999999 888776655 89999999 9999999999999999999999999999999
Q ss_pred EcCCCC
Q 010536 503 WQPMEL 508 (508)
Q Consensus 503 ~d~dG~ 508 (508)
+|+||+
T Consensus 443 ~d~dG~ 448 (570)
T 3c5e_A 443 KDEDGY 448 (570)
T ss_dssp ECTTSC
T ss_pred EcCCce
Confidence 999995
No 12
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.1e-59 Score=482.55 Aligned_cols=394 Identities=16% Similarity=0.190 Sum_probs=309.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (508)
Q Consensus 41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l 120 (508)
...++.++|+++++++|+++|+++....++.++.++.+||+||.++++++|++|.++|+ +||+|+++++|+++++++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999872111334455789999999999999999999996 99999999999999999999
Q ss_pred HHHHcCCEEEeccC---CCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCC-CccEEEEecCCCchhhhhhhhcCc
Q 010536 121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELGV 196 (508)
Q Consensus 121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 196 (508)
||+++|++++||++ .++.+++.++++.++++++|++......+.+....... ....++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 78899999999999999999999887776554432111 111233222111
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCC------CcEEE
Q 010536 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTYF 270 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~------~~~~l 270 (508)
.............++++++|+|||||||.||||+++|+++...+......+ .... +++++
T Consensus 169 ---------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l 234 (480)
T 3t5a_A 169 ---------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV 234 (480)
T ss_dssp ---------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred ---------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence 011112233445678999999999999999999999999999988877766 4444 89999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEec-C----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536 271 SFLPLAHIYDQII-ETHCIHKGCSIGFWR-G----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (508)
Q Consensus 271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (508)
+.+|++|.+++.. ++.+++.|+++++.+ . ++..+++.++++++| +..+|+++..++.....
T Consensus 235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------ 301 (480)
T 3t5a_A 235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------ 301 (480)
T ss_dssp ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence 9999999999874 788999999999986 2 899999999999999 88999998887652110
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC------Cceeeecccc
Q 010536 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLT 418 (508)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~T 418 (508)
.+.....++ ++||.+++||+++++++.+++.+.++ ..+++.||+|
T Consensus 302 ---------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T 352 (480)
T 3t5a_A 302 ---------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA 352 (480)
T ss_dssp ---------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred ---------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence 011111122 38999999999999999999999874 3799999999
Q ss_pred cCCcceeeccCCC------------------------CcccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecC
Q 010536 419 ESCSGCFTSLADV------------------------FNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGN 473 (508)
Q Consensus 419 E~~~~~~~~~~~~------------------------~~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~ 473 (508)
|+++.++...... ....+++|+|++ ++++|+| ++ +..++. |+.|||+|+|+
T Consensus 353 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~~~--g~~GEl~v~g~ 428 (480)
T 3t5a_A 353 EATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIECPD--GTVGEIWVHGD 428 (480)
T ss_dssp TTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEECCT--TBCEEEEEEST
T ss_pred ccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCCCC--CCEEEEEEeCC
Confidence 9998877655432 123368999999 9999999 55 555554 49999999999
Q ss_pred cccccccCCcccccccc------------cCCccccCcEEEEcCCCC
Q 010536 474 TLFSGYYKRPDLTEEVI------------VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 474 ~v~~gY~~~~~~~~~~~------------~~gw~~TGDlg~~d~dG~ 508 (508)
+++.||+++|+.+.+.| .+|||+|||+|++| ||+
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~ 474 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK 474 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTE
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCE
Confidence 99999999999999988 35699999999997 884
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.8e-58 Score=475.64 Aligned_cols=379 Identities=20% Similarity=0.270 Sum_probs=307.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
+.|+.++|+++++++|+++|+.+. +.. +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999864 322 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEE--cCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (508)
|+++|++++|++|.++.+++.++++.++++++|+ +......+..... ..+ ++.+
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~~~------------------- 129 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-IIFL------------------- 129 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EEEG-------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eEEe-------------------
Confidence 9999999999999999999999999999999999 6654443311111 111 2211
Q ss_pred eHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 010536 200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF 272 (508)
Q Consensus 200 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 272 (508)
+++.... ..........++++++|+|||||||.||||.++|+++...+......+ .+ ..++++++.
T Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 130 --GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp --GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred --cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 1111110 111111345678999999999999999999999999999888776655 45 788999999
Q ss_pred cChHHHHHHH-HHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010536 273 LPLAHIYDQI-IETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (508)
Q Consensus 273 ~pl~~~~g~~-~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
+|++|.+++. ..+.++..|+++++.+ +++..+++.++++++|+++++|++++.|++......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 5788999999999987 499999999999999999999999999875321000
Q ss_pred HHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC
Q 010536 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 430 (508)
...++ +++|.+++||+++++++.+++++.++..+++.||+||++ .+....
T Consensus 267 -------------------~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 267 -------------------SSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp -------------------CCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred -------------------ccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 00011 389999999999999999999999999999999999983 332222
Q ss_pred CCcccCccccccCCeEEEEeecCCC---CccCCCCCCCCeEEEe-cCcccccccCCcccccccccCCccccCcEEEEcCC
Q 010536 431 VFNMIGTVGVPMTTVEARLESVPEM---GYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM 506 (508)
Q Consensus 431 ~~~~~~s~G~p~~~~~~~i~d~~~~---~~~~~~~~~~GEl~v~-g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d 506 (508)
....+++|+|.++++++|+| +++ ..++ .|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~--~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~d 392 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVA--NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE 392 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCC--TTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCC--CCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCC
Confidence 22348899999999999999 665 4444 4589999999 89999999999999999999999999999999999
Q ss_pred CC
Q 010536 507 EL 508 (508)
Q Consensus 507 G~ 508 (508)
|+
T Consensus 393 G~ 394 (504)
T 1t5h_X 393 GT 394 (504)
T ss_dssp SC
T ss_pred ce
Confidence 95
No 14
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.2e-59 Score=491.77 Aligned_cols=409 Identities=14% Similarity=0.196 Sum_probs=328.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
.+++.++|+++++++|+++|+++. +..++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 356889999999999999999986 43334457899999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcCccC-CCCccEEEEecCCCchhhhhh
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRC-CLYLKTIVSFANVSSSQKKEA 191 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 191 (508)
|+++|++++|+++.++.+++.+++++++++++|+++.... .+.+..... ...++.++.++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999999999876432 122222111 023456666643211000
Q ss_pred hhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHh-hhhhhhhhccccCCCCcEEE
Q 010536 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYF 270 (508)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 270 (508)
........|+++..............++++++|+|||||||.||||+++|++++..+. .....+ .+..+|+++
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l 302 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW 302 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred -ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence 0011234677777644322334455679999999999999999999999999887664 334444 678999999
Q ss_pred EecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536 271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (508)
Q Consensus 271 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (508)
+.+|++|..++. .++.+|+.|+++++.+. ++..+++.++++++|+++++|++++.|++....
T Consensus 303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------ 370 (652)
T 1pg4_A 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------ 370 (652)
T ss_dssp ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc------------
Confidence 999999999985 57899999999999863 789999999999999999999999998642110
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCC
Q 010536 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC 421 (508)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~ 421 (508)
.....++ ++||.+++||+++++++.+++.+.+| +.+++.||+||++
T Consensus 371 -----------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 419 (652)
T 1pg4_A 371 -----------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419 (652)
T ss_dssp -----------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred -----------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccc
Confidence 0111122 38999999999999999999999888 8999999999999
Q ss_pred cceeeccCC-CCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCCcc
Q 010536 422 SGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWF 495 (508)
Q Consensus 422 ~~~~~~~~~-~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~gw~ 495 (508)
+.++..... .....+++|+|++|++++|+| ++|..++.| +.|||+|+| |+++.||+++++.+.+.| .+|||
T Consensus 420 ~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y 496 (652)
T 1pg4_A 420 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY 496 (652)
T ss_dssp SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred cceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence 776655433 234458999999999999999 888776654 899999999 799999999999887776 37999
Q ss_pred ccCcEEEEcCCCC
Q 010536 496 HTGDIGEWQPMEL 508 (508)
Q Consensus 496 ~TGDlg~~d~dG~ 508 (508)
+|||+|++|+||+
T Consensus 497 ~TGDlg~~d~dG~ 509 (652)
T 1pg4_A 497 FSGDGARRDEDGY 509 (652)
T ss_dssp EEEEEEEECTTSC
T ss_pred ECCcEEEEcCCCc
Confidence 9999999999996
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=9.7e-59 Score=484.36 Aligned_cols=374 Identities=18% Similarity=0.219 Sum_probs=310.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~ 119 (508)
....++.++|+++++++|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999875 3 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF 199 (508)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (508)
+||+++|++++|++|.++.+++.++++.++++++|++......+ .....++..+..
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~---------------- 198 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA---------------- 198 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc----------------
Confidence 99999999999999999999999999999999999987654322 111122111100
Q ss_pred eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 279 (508)
..............++++++|+|||||||.||||+++|+++.+..... ..+ .+..++++++.+|++|..
T Consensus 199 -----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~~ 267 (570)
T 4gr5_A 199 -----ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWDA 267 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSST
T ss_pred -----cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHHH
Confidence 000011122334577999999999999999999999999998766552 222 677899999999999877
Q ss_pred HHHHHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536 280 DQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (508)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
+...++.+++.|+++++.+ +++..+++.++++++|++.++|+++..|++....
T Consensus 268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------ 323 (570)
T 4gr5_A 268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE------------------------ 323 (570)
T ss_dssp HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------------------------
Confidence 7777888999999999875 3899999999999999999999999998652110
Q ss_pred hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC---C
Q 010536 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---F 432 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~ 432 (508)
++ ++||.+++||++++.++.+.+.+.+ ++.+++.||+||++++++...... .
T Consensus 324 ----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~ 379 (570)
T 4gr5_A 324 ----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS 379 (570)
T ss_dssp ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred ----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence 11 3899999999999999999998877 789999999999988766543322 2
Q ss_pred cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-C--------CccccCcEEEE
Q 010536 433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-D--------GWFHTGDIGEW 503 (508)
Q Consensus 433 ~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-~--------gw~~TGDlg~~ 503 (508)
....++|+|+++++++|+| +++..++.| +.|||+|+|++++.||+++++.+.+.|. + |||+|||+|++
T Consensus 380 ~~~~~iG~p~~~~~v~i~d-~~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~ 456 (570)
T 4gr5_A 380 GTALPIGVPLAGKRAYVLD-DDLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR 456 (570)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred CCccccceeeCCCEEEEEC-CCCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence 2336799999999999999 888776655 8999999999999999999999999883 2 69999999999
Q ss_pred cCCCC
Q 010536 504 QPMEL 508 (508)
Q Consensus 504 d~dG~ 508 (508)
|+||+
T Consensus 457 d~dG~ 461 (570)
T 4gr5_A 457 RADGV 461 (570)
T ss_dssp CTTSC
T ss_pred CCCCe
Confidence 99995
No 16
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=6.3e-59 Score=478.42 Aligned_cols=385 Identities=22% Similarity=0.323 Sum_probs=311.6
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcC
Q 010536 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126 (508)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G 126 (508)
++|++.++++|+++++... ...+ +++||+||.++++++|++|.++|+++||+|+++++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4788999999999999854 2111 579999999999999999999999999999999999999999999999999
Q ss_pred CEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHh
Q 010536 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ 206 (508)
Q Consensus 127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (508)
++++|++|.++.+++.+++++++++++|++......+....... . ..+..+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976554433222111 0 12333322211 11222222
Q ss_pred cCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 010536 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET 285 (508)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~ 285 (508)
............++++++|+|||||||.||||.++|+++.+.+......+ .+..+|++++.+|++|.+++.. .+
T Consensus 142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~ 216 (503)
T 4fuq_A 142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN 216 (503)
T ss_dssp TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence 22222233456789999999999999999999999999999998887776 7889999999999999999764 67
Q ss_pred HHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCc
Q 010536 286 HCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364 (508)
Q Consensus 286 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (508)
.+++.|+++++.+ +++..+++.++ ++|+++++|+++..+++..
T Consensus 217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~---------------------------------- 260 (503)
T 4fuq_A 217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSP---------------------------------- 260 (503)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCT----------------------------------
T ss_pred HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCC----------------------------------
Confidence 8899999998887 49999999998 8999999999999886411
Q ss_pred chhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCC
Q 010536 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 444 (508)
Q Consensus 365 ~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~ 444 (508)
.....++ +++|.+++||+++++++.+.|.+.+|..+++.||+||++..+.. ........+++|+|+|+
T Consensus 261 ---~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~ 328 (503)
T 4fuq_A 261 ---RLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSN-PYDGDRVPGAVGPALPG 328 (503)
T ss_dssp ---TCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCC-CSSSCCCTTEEEEBCTT
T ss_pred ---Cccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccccc-CCCCCCcCCccccCCCC
Confidence 0111111 38999999999999999999999999999999999999876543 33334445899999999
Q ss_pred eEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536 445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 445 ~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~ 508 (508)
++++|+|.+++..++. |+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus 329 ~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~ 391 (503)
T 4fuq_A 329 VSARVTDPETGKELPR--GDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGY 391 (503)
T ss_dssp CEEEEECTTTCCBCCT--TCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCE
T ss_pred eEEEEEECCCCCCCcC--CCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCc
Confidence 9999999555665554 4999999999999999999999999999 589999999999999984
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-58 Score=489.90 Aligned_cols=410 Identities=19% Similarity=0.242 Sum_probs=328.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME 120 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~-~~gv~~gd~Vai~~~n~~~~~~~~l 120 (508)
.+++.++|+++++++|+++|+++. +...+..+.+||+||.++++++|++|+ ++|+++||+|+++++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 367889999999999999999986 433344578999999999999999999 9999999999999999999999999
Q ss_pred HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcCccCCCCccEEEEecCCCchhhhhh
Q 010536 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA 191 (508)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (508)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+.+... .++.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999876432 1222222 2234566666653211000
Q ss_pred hhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 010536 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF 270 (508)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 270 (508)
.........|+++..............++++++|+|||||||.||||+++|++++..+.. ....+ .+..+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~ 308 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF 308 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence 000112346777765443223344567899999999999999999999999998876643 33344 678999999
Q ss_pred EecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536 271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344 (508)
Q Consensus 271 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (508)
+.+|++|..+.. .++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------- 375 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------- 375 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-------------
Confidence 999999999985 57899999999999863 78999999999999999999999998753100
Q ss_pred HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCC
Q 010536 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC 421 (508)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~ 421 (508)
...+..++ ++||.+++||+++++++.+++.+.+| +.+++.||+||++
T Consensus 376 ----------------------~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 425 (663)
T 1ry2_A 376 ----------------------SYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 425 (663)
T ss_dssp ----------------------TSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred ----------------------cccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence 00111122 38999999999999999999999887 8999999999998
Q ss_pred cceeeccC--CCCcccCccccccCCeEEEEeecC-CCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCC
Q 010536 422 SGCFTSLA--DVFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDG 493 (508)
Q Consensus 422 ~~~~~~~~--~~~~~~~s~G~p~~~~~~~i~d~~-~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~g 493 (508)
+.++.... ....+++++|+|++|++++|+| + +|..++. .|+.|||+|+| |+++.||+++++.+.+.| .+|
T Consensus 426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g 503 (663)
T 1ry2_A 426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 503 (663)
T ss_dssp SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence 77666543 2234558999999999999999 6 7766554 24889999999 589999999999888776 379
Q ss_pred ccccCcEEEEcCCCC
Q 010536 494 WFHTGDIGEWQPMEL 508 (508)
Q Consensus 494 w~~TGDlg~~d~dG~ 508 (508)
||+|||+|++|+||+
T Consensus 504 ~y~TGDlg~~d~dG~ 518 (663)
T 1ry2_A 504 YYFTGDGAAKDKDGY 518 (663)
T ss_dssp SEEEEEEEEECTTCC
T ss_pred EEEcCCEEEEcCCCC
Confidence 999999999999995
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.3e-58 Score=476.70 Aligned_cols=396 Identities=19% Similarity=0.227 Sum_probs=316.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~ 119 (508)
..++++.++|+++++ +|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 345669999999999 9999999864 3 47999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCc-cEEEEecCCCchhhhhhhhcCcee
Q 010536 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSC 198 (508)
Q Consensus 120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 198 (508)
+||+++|++++|+++.++.+++.++++.++++++|++......+.+.... .... ..++..+..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES-AEHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHC-C---CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhh-ccccCceEEEecccccc--------cccc
Confidence 99999999999999999999999999999999999998766554433211 1122 344443322110 0012
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 277 (508)
..++++..............++++++|+|||||||.||||.++|+++ ..........+ .+..+|++++.+|++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFF 236 (529)
T ss_dssp CBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTS
T ss_pred cchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHH
Confidence 24666655332222334457799999999999999999999999999 55555543333 6788999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEe-c-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536 278 IYDQII-ETHCIHKGCSIGFW-R-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (508)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~-~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
.+++.. .+.++..|+++++. + +++..+++.++++++|+++++|+++..+++...
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 293 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN----------------------- 293 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------
Confidence 999875 66789999999987 3 499999999999999999999999988754100
Q ss_pred hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~ 434 (508)
.....+ .++|.+++||+++++++.+++++.+|+.+++.||+||++.+++...... ..
T Consensus 294 ----------~~~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~ 350 (529)
T 2v7b_A 294 ----------LPARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VE 350 (529)
T ss_dssp ----------CCCGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CC
T ss_pred ----------cccccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Cc
Confidence 000000 2789999999999999999999999999999999999977666554443 34
Q ss_pred cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 508 (508)
.+++|+|+++++++|+| +++..++.| +.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus 351 ~~~~G~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~ 421 (529)
T 2v7b_A 351 YGTTGRPVPGYEIELRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGC 421 (529)
T ss_dssp TTSCCEECTTCEEEEEC-TTSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred cCCcccCCCCCEEEEEC-CCCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCcc
Confidence 48999999999999999 888776655 899999999999999999999999999999999999999999985
No 19
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1e-57 Score=479.10 Aligned_cols=371 Identities=17% Similarity=0.150 Sum_probs=308.0
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (508)
Q Consensus 41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l 120 (508)
...++.++|+++++++|+++|+++. + +++||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4579999999999999999999875 3 579999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (508)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (508)
||+++|++++||+|.++.+++.++++++++++++++....... .....+ .+...
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~~~----------------- 149 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVRHL----------------- 149 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGGGC-----------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eeccC-----------------
Confidence 9999999999999999999999999999999999765432211 011111 00000
Q ss_pred HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (508)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 280 (508)
. ............++++++|+|||||||.||||+++|+++.+.+.. ...+ .+..++++++.+|++|..+
T Consensus 150 ----~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~ 218 (620)
T 4dg8_A 150 ----P-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA 218 (620)
T ss_dssp ----C-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred ----C-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence 0 001111223346799999999999999999999999999887765 3333 6788999999999999999
Q ss_pred HHHHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536 281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (508)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
+..++.+++.|+++++.+ +++..+++.++++++|+++++|++++.+++...
T Consensus 219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------------------- 272 (620)
T 4dg8_A 219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-------------------------- 272 (620)
T ss_dssp HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence 988899999999999864 389999999999999999999999998864100
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC---Cc
Q 010536 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---FN 433 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~~ 433 (508)
.++ ++||.+++||+++++++.+.+.+.+ ++.++|.||+||++++++...... ..
T Consensus 273 --------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 330 (620)
T 4dg8_A 273 --------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330 (620)
T ss_dssp --------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred --------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence 011 3899999999999988888877765 889999999999998766543322 23
Q ss_pred ccCccccccCCeEEEEeecCCCCc-cCCCCCCCCeEEEecCcccccccCCcccccccccC--------CccccCcEEEEc
Q 010536 434 MIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD--------GWFHTGDIGEWQ 504 (508)
Q Consensus 434 ~~~s~G~p~~~~~~~i~d~~~~~~-~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~--------gw~~TGDlg~~d 504 (508)
...++|+|+++++++|+| +++.. ++ .|+.|||+|+|+++++||+++++.+.+.|.+ +||+|||+|++|
T Consensus 331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~--~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 331 DDIPIGKAIAGTAVLLLD-EHGQEIAE--PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCCS--SSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCceecccCcEEEEEC-ccCCCCCC--CCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 347899999999999999 77765 34 4589999999999999999999999999943 799999999999
Q ss_pred CCCC
Q 010536 505 PMEL 508 (508)
Q Consensus 505 ~dG~ 508 (508)
+||+
T Consensus 408 ~dG~ 411 (620)
T 4dg8_A 408 EQGR 411 (620)
T ss_dssp TTSC
T ss_pred CCCe
Confidence 9995
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.3e-57 Score=480.09 Aligned_cols=393 Identities=17% Similarity=0.218 Sum_probs=325.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (508)
Q Consensus 41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l 120 (508)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 35789999999988 999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (508)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (508)
||+++|++++|++|..+.+++.++++.+++++++++..... .............+.+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999986541 111111111233444444433221
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 276 (508)
..+.+............+..++++++|+|||||||.||||+++|+++.+.+......+ .+..++++++.+|++
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 163 --HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp --TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 2344444444333344456779999999999999999999999999999999888777 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536 277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353 (508)
Q Consensus 277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++........
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~----------------- 298 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR----------------- 298 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT-----------------
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc-----------------
Confidence 9999874 7889999999999874 8999999999999999999999999987643321100
Q ss_pred hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCc
Q 010536 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~ 433 (508)
.++ +++|.+++||+++++++.+++.+.++..+++.||+||++..++........
T Consensus 299 ------------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~ 352 (617)
T 3rg2_A 299 ------------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK 352 (617)
T ss_dssp ------------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred ------------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence 011 389999999999999999999999999999999999987655433332223
Q ss_pred ccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536 434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 434 ~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~ 508 (508)
...++|+|+ ++++++|+| ++++.++.| +.|||+|+|+++++||+++++.+.+.| .++||+|||+|++|+||+
T Consensus 353 ~~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~ 426 (617)
T 3rg2_A 353 IIHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGY 426 (617)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred cccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCce
Confidence 336789997 788999999 888877665 899999999999999999999999999 789999999999999985
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.5e-57 Score=501.99 Aligned_cols=420 Identities=23% Similarity=0.301 Sum_probs=333.3
Q ss_pred CCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536 21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN 100 (508)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~ 100 (508)
....+|++..+...+ +...++.++|.++++++|+++|+++. +.. +.+||+||.++++++|++|.++|++
T Consensus 43 ~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~ 111 (979)
T 3tsy_A 43 NSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVN 111 (979)
T ss_dssp --CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 345566665543222 34589999999999999999999875 322 6899999999999999999999999
Q ss_pred CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010536 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180 (508)
Q Consensus 101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (508)
+||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+....... . ..++.+
T Consensus 112 ~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~ 188 (979)
T 3tsy_A 112 QNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--G-VVIVCI 188 (979)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--C-CEEEEC
T ss_pred CcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--C-ceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987766554432211 1 233444
Q ss_pred cCCCchhhhhhhhcCceeeeHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh
Q 010536 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257 (508)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~ 257 (508)
+..... ........++++...... ........++++++|+|||||||.||||.++|++++..+........
T Consensus 189 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 262 (979)
T 3tsy_A 189 DDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 262 (979)
T ss_dssp CCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS
T ss_pred CCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc
Confidence 322110 011123445554433211 22333567899999999999999999999999999988776543210
Q ss_pred hccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 010536 258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335 (508)
Q Consensus 258 ~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 335 (508)
....+..++++++.+|++|.+++.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+++...
T Consensus 263 -~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---- 337 (979)
T 3tsy_A 263 -PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE---- 337 (979)
T ss_dssp -CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG----
T ss_pred -ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc----
Confidence 0125678999999999999999964 778899999999987 499999999999999999999999998865211
Q ss_pred cCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeee
Q 010536 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQG 414 (508)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~ 414 (508)
....++ ++||.+++||+++++++.+++.+.+ +..+++.
T Consensus 338 ---------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~ 376 (979)
T 3tsy_A 338 ---------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQG 376 (979)
T ss_dssp ---------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEEC
T ss_pred ---------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEee
Confidence 111122 3899999999999999999999988 8999999
Q ss_pred cccccCCcceeeccC----CCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc
Q 010536 415 YGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490 (508)
Q Consensus 415 YG~TE~~~~~~~~~~----~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~ 490 (508)
||+||++.+++.... ......+++|+|+++++++|+|.+++..++. |+.|||+|+|++++.||+++|+.+.+.|
T Consensus 377 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~--g~~GEl~i~g~~v~~GY~~~p~~t~~~f 454 (979)
T 3tsy_A 377 YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSR--NQPGEICIRGHQIMKGYLNNPAATAETI 454 (979)
T ss_dssp EECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCT--TCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred echhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCC--CCccEEEEECCCccccccCChhhhhhhc
Confidence 999999987665421 1233458999999999999999444555554 5899999999999999999999999999
Q ss_pred -cCCccccCcEEEEcCCCC
Q 010536 491 -VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 491 -~~gw~~TGDlg~~d~dG~ 508 (508)
.+|||+|||+|++|+||+
T Consensus 455 ~~~g~~~TGDl~~~~~dG~ 473 (979)
T 3tsy_A 455 DKDGWLHTGDIGLIDDDDE 473 (979)
T ss_dssp CTTSCEEEEEEEEECTTSC
T ss_pred cCCCcEEcCCEEEEcCCce
Confidence 789999999999999985
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=5.2e-57 Score=469.76 Aligned_cols=373 Identities=19% Similarity=0.285 Sum_probs=306.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536 41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120 (508)
Q Consensus 41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l 120 (508)
...++.++|.++++++|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999865 3 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS 200 (508)
Q Consensus 121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (508)
||+++|++++||+|.++.+++.++++.++++++|++......+..... ...+..+.....
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~~--------------- 167 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDTI--------------- 167 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCSTT---------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchhh---------------
Confidence 999999999999999999999999999999999998765544322111 112222221100
Q ss_pred HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536 201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (508)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 280 (508)
..........+..++++++|+|||||||.||||.++|+++...+......+ .+..+|++++.+|++|..+
T Consensus 168 -----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 237 (563)
T 1amu_A 168 -----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS 237 (563)
T ss_dssp -----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred -----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence 000011122344678999999999999999999999999998887766655 7789999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (508)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
+..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+..
T Consensus 238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~---------------------------- 289 (563)
T 1amu_A 238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---------------------------- 289 (563)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----------------------------
T ss_pred HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh----------------------------
Confidence 8878889999999998763 88999999999999999999999876521
Q ss_pred hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC--Ccc
Q 010536 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--FNM 434 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~ 434 (508)
. .+ .++|.+++||+++++++.+.|.+ .+.+++.||+||++.+++...... ...
T Consensus 290 ---------~------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 344 (563)
T 1amu_A 290 ---------E------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH 344 (563)
T ss_dssp ---------T------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred ---------c------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence 0 00 38999999999999999999987 479999999999987766543322 223
Q ss_pred cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------CCccccCcEEEEcCCC
Q 010536 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQPME 507 (508)
Q Consensus 435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDlg~~d~dG 507 (508)
..++|+|+++++++|+| +++..++.| +.|||+|+|++++.||+++|+.+.+.|. ++||+|||+|++|+||
T Consensus 345 ~~~vG~p~~~~~v~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG 421 (563)
T 1amu_A 345 SVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG 421 (563)
T ss_dssp SCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred CCcccceeCCCEEEEEC-CCcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence 47899999999999999 888766655 8999999999999999999999999883 2499999999999999
Q ss_pred C
Q 010536 508 L 508 (508)
Q Consensus 508 ~ 508 (508)
+
T Consensus 422 ~ 422 (563)
T 1amu_A 422 N 422 (563)
T ss_dssp C
T ss_pred e
Confidence 5
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2e-57 Score=470.15 Aligned_cols=377 Identities=16% Similarity=0.149 Sum_probs=310.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
..++.++|++.++++|+++|+.+. + +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999865 3 6799999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
|+++|++++|++|.++.+++.++++.++++++|++.+....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432211 11 1 1112
Q ss_pred HHHH---hcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536 202 EEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (508)
Q Consensus 202 ~~~~---~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~ 278 (508)
.++. .............++++++|+|||||||.||||.++|+++.+.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221 111112223345779999999999999999999999999998877655432 1267788999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536 279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354 (508)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
.++...+.++..|+++++.+. ++..+++.++++++|++.++|+++..++...
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------ 256 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD------------------------ 256 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTST------------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh------------------------
Confidence 988888889999999998763 8899999999999999999999998875310
Q ss_pred hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC--
Q 010536 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-- 431 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-- 431 (508)
.....++ +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++......
T Consensus 257 -------------~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 257 -------------DFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp -------------TCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred -------------ccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 0001111 3899999999999999999999988 899999999999988766543221
Q ss_pred --CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc----cCCccccCcEEEEcC
Q 010536 432 --FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI----VDGWFHTGDIGEWQP 505 (508)
Q Consensus 432 --~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~----~~gw~~TGDlg~~d~ 505 (508)
....+++|+|+|+++++|+| +++..++.| +.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12336899999999999999 888776655 899999999999999999999999988 356999999999999
Q ss_pred CCC
Q 010536 506 MEL 508 (508)
Q Consensus 506 dG~ 508 (508)
||+
T Consensus 393 dG~ 395 (521)
T 3l8c_A 393 DNI 395 (521)
T ss_dssp SSC
T ss_pred CCe
Confidence 995
No 24
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8.2e-58 Score=471.80 Aligned_cols=376 Identities=18% Similarity=0.201 Sum_probs=309.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122 (508)
Q Consensus 43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~ 122 (508)
+|+.++|+++++++|+++|+++. + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999875 3 57999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE 202 (508)
Q Consensus 123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
+++|++++|++|.++.+++.++++.++++++|++....... .. ..++.. ..+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~------------------~~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSE------------------DNLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEET------------------HHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceech------------------hhhh
Confidence 99999999999999999999999999999999975432110 00 011110 0122
Q ss_pred HHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536 203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (508)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 280 (508)
++.... ..........++++++|+|||||||.||||.++|+++.+.+......+ .+..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 112223345679999999999999999999999999999998877776 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (508)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
+..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..++...
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------- 253 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------------------------- 253 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------
Confidence 8888899999999999863 8999999999999999999999998875310
Q ss_pred hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC----
Q 010536 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---- 431 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---- 431 (508)
.....++ +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++......
T Consensus 254 -----------~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 254 -----------SFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp -----------TCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred -----------cccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 0111112 3899999999999999999999998 889999999999988776544332
Q ss_pred CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc----CCccccCcEEEEcCCC
Q 010536 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIGEWQPME 507 (508)
Q Consensus 432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~----~gw~~TGDlg~~d~dG 507 (508)
.....++|+|+++++++|+| +++..++.| +.|||+|+||+++.||+++++.+.+.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12347899999999999999 888776655 8999999999999999999999999883 569999999999 677
Q ss_pred C
Q 010536 508 L 508 (508)
Q Consensus 508 ~ 508 (508)
+
T Consensus 391 ~ 391 (512)
T 3fce_A 391 L 391 (512)
T ss_dssp E
T ss_pred E
Confidence 4
No 25
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.2e-57 Score=466.21 Aligned_cols=375 Identities=19% Similarity=0.232 Sum_probs=313.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
+|+.++|+++|+++|+++|+++. + +++||+||.++++++|.+|.+. |+++|++|+++++|+++++++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999865 3 6899999999999999999885 889999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
|+++|++++|++|.++.+++.++++.++++++|++....... .. . ......+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---c----------------------ccceecH
Confidence 999999999999999999999999999999999976432111 00 0 0112344
Q ss_pred HHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536 202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280 (508)
Q Consensus 202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 280 (508)
+++.... ..........++++++|+|||||||.||||.++|+++...+......+ .+..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 5554433 112222345678999999999999999999999999999998877766 7789999999999999999
Q ss_pred HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536 281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (508)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++...
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------- 252 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------- 252 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------
Confidence 8888899999999998863 8999999999999999999999999876410
Q ss_pred hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC----
Q 010536 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---- 431 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---- 431 (508)
.....++ +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++......
T Consensus 253 -----------~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 253 -----------GFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp -----------TCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred -----------ccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 0011111 3899999999999999999999998 899999999999988766543221
Q ss_pred CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc--cCC--ccccCcEEEEcCCC
Q 010536 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGDIGEWQPME 507 (508)
Q Consensus 432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDlg~~d~dG 507 (508)
.....++|+|+|+++++|+| +++..++.| +.|||+|+|++++.||+++++.+.+.| .+| ||+|||+|+++ ||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CC
Confidence 22336799999999999999 888766655 899999999999999999999999998 344 89999999994 77
Q ss_pred C
Q 010536 508 L 508 (508)
Q Consensus 508 ~ 508 (508)
+
T Consensus 390 ~ 390 (511)
T 3e7w_A 390 Q 390 (511)
T ss_dssp E
T ss_pred e
Confidence 4
No 26
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.7e-56 Score=465.71 Aligned_cols=391 Identities=18% Similarity=0.165 Sum_probs=312.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCC----CCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~----~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~ 115 (508)
....++.++|+++|+++|+++|+++. ++ .....+.+||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45688999999999999999999876 32 12234789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195 (508)
Q Consensus 116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (508)
+++++||+++|++++||+|.++.+++.++++.++++++|+++.....+. ......++... .
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~--~----------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTK--N----------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETT--C-----------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeeccc--c-----------
Confidence 9999999999999999999999999999999999999999876543221 01111222111 0
Q ss_pred ceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhh---ccccCCCCcEEEEe
Q 010536 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV---TGKVCSEEDTYFSF 272 (508)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 272 (508)
..+.+................+++++|+|||||||.||||.++|+++...+..+...+.. ....+...+++++.
T Consensus 154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (562)
T 3ite_A 154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL 230 (562)
T ss_dssp ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence 122233322222223334567889999999999999999999999999888776554321 11356788999999
Q ss_pred cChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010536 273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (508)
Q Consensus 273 ~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
.|++|..++..++.++..|+++++.+. .+..+++.++++++|+++++|++++.+..
T Consensus 231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~---------------------- 288 (562)
T 3ite_A 231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL---------------------- 288 (562)
T ss_dssp SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence 999998888878889999999988764 46789999999999999999998876521
Q ss_pred HHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC
Q 010536 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 430 (508)
.+ .++ +++|.+++||+++++++.+++++.+++.+++.||+||+++.++.....
T Consensus 289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 341 (562)
T 3ite_A 289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRIL 341 (562)
T ss_dssp ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECC
T ss_pred ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeec
Confidence 00 011 389999999999999999999998899999999999998877766555
Q ss_pred CCcccCccccccCCeEEEEeecCCC-CccCCCCCCCCeEEEecCcccccccCCcccccccccCC--ccccCcEEEEcCCC
Q 010536 431 VFNMIGTVGVPMTTVEARLESVPEM-GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTGDIGEWQPME 507 (508)
Q Consensus 431 ~~~~~~s~G~p~~~~~~~i~d~~~~-~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~g--w~~TGDlg~~d~dG 507 (508)
.....+++|+|+++++++|+| +++ ..++ .|+.|||+|+|++++.||+++++.+...+.+| ||+|||+|++|+||
T Consensus 342 ~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG 418 (562)
T 3ite_A 342 PDSDTRCIGHPLGDSVAHVLA-PGSNEHVK--KGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS 418 (562)
T ss_dssp TTSCTTEEEEECTTCEEEEEC-TTSSCBCC--TTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred CCCCCccccccCCCCeEEEEe-CCCCCCCC--CCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence 444558999999999999999 544 4344 55999999999999999999999988777777 99999999999999
Q ss_pred C
Q 010536 508 L 508 (508)
Q Consensus 508 ~ 508 (508)
+
T Consensus 419 ~ 419 (562)
T 3ite_A 419 S 419 (562)
T ss_dssp C
T ss_pred e
Confidence 6
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.7e-57 Score=473.55 Aligned_cols=392 Identities=19% Similarity=0.223 Sum_probs=312.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536 40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~ 119 (508)
....++.++|+++|+++|+++|+++. ++ +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999886 42 23378999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeccCCC---CHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536 120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196 (508)
Q Consensus 120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (508)
+||+++|++++|++|.. +.+++.++++.+++++++++......+.............+....
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 147 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA--------------- 147 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---------------
Confidence 99999999999999988 457899999999999999987655544322211111111111111
Q ss_pred eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~ 276 (508)
.+++..............++++++|+|||||||.||||.++|++++..+......+ .+..++++++.+|++
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 148 ----LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH 218 (590)
T ss_dssp ----GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ----chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence 11110000111223455778999999999999999999999999999999987776 788999999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010536 277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN 350 (508)
Q Consensus 277 ~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++.+..
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------ 280 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------ 280 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence 9999985 8889999999998863 789999999999999999999999988653211
Q ss_pred HHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC------CceeeecccccCCcce
Q 010536 351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCSGC 424 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~ 424 (508)
......++ +++|.+++||+++++++.+++.+.++ ..+++.||+||+++++
T Consensus 281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~ 336 (590)
T 3kxw_A 281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV 336 (590)
T ss_dssp ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence 11111122 38999999999999999999999873 4799999999999887
Q ss_pred eeccCC--------------------------CCcccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecCcccc
Q 010536 425 FTSLAD--------------------------VFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFS 477 (508)
Q Consensus 425 ~~~~~~--------------------------~~~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~~v~~ 477 (508)
+..... ......++|+|+++ ++|+| ++ +..++ .|+.|||+|+||+++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~~~--~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIPCD--FDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCBCC--TTBCEEEEEESTTSCC
T ss_pred ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcCCC--CCCEEEEEEeCCcccc
Confidence 754321 11233688999998 88898 55 54444 5589999999999999
Q ss_pred cccCCcccccccccC-------C--ccccCcEEEEcCCCC
Q 010536 478 GYYKRPDLTEEVIVD-------G--WFHTGDIGEWQPMEL 508 (508)
Q Consensus 478 gY~~~~~~~~~~~~~-------g--w~~TGDlg~~d~dG~ 508 (508)
||+++|+.+.+.|.+ | ||+|||+|++| ||+
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~ 450 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence 999999999999843 5 99999999999 774
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5.5e-56 Score=465.46 Aligned_cols=397 Identities=19% Similarity=0.223 Sum_probs=317.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc
Q 010536 33 DGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (508)
Q Consensus 33 ~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~ 112 (508)
+.++...+...++.++|+++++++|+.+++.+. ....+++||+||.++++++|++|.++|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 11 HSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETS 84 (576)
T ss_dssp ---CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSS
T ss_pred CCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Confidence 344555567899999999999999998887432 22337899999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHcCCEEEeccCCCC-------HHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCc
Q 010536 113 PEWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (508)
Q Consensus 113 ~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (508)
++++++++||+++|++++|+++.++ .+++.++++.++++++|++.+....+....... ... .+
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~~-------- 154 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-HV-------- 154 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-EE--------
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-ee--------
Confidence 9999999999999999999999998 799999999999999999987666554333211 111 11
Q ss_pred hhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCC
Q 010536 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE 265 (508)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~ 265 (508)
....................++++++|+|||||||.||||.++|++++..+....... ..+..
T Consensus 155 -------------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~----~~~~~ 217 (576)
T 3gqw_A 155 -------------LSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDG----IKLRP 217 (576)
T ss_dssp -------------EEHHHHHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTT----SCCCT
T ss_pred -------------cchhhhhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcc----cCCCC
Confidence 1111111111222233445679999999999999999999999999998887765431 27789
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCCh
Q 010536 266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339 (508)
Q Consensus 266 ~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 339 (508)
+|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|+++++|.++..+.+.+.
T Consensus 218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------- 289 (576)
T 3gqw_A 218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVN-------- 289 (576)
T ss_dssp TCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCC--------
T ss_pred cceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhc--------
Confidence 999999999999999875 6678899999888762 88999999999999999999999987754211
Q ss_pred hHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc------CCceee
Q 010536 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS------GAPLTQ 413 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~------~~~v~~ 413 (508)
.......++ +++|.+++||+++++++.++|.+.+ +..+++
T Consensus 290 --------------------------~~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (576)
T 3gqw_A 290 --------------------------EKDLAELDL--------SCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMP 335 (576)
T ss_dssp --------------------------HHHHTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEE
T ss_pred --------------------------ccccccCCh--------hhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccc
Confidence 111111122 3899999999999999999999987 678999
Q ss_pred ecccccCCcceeeccCCCC---------------------------cccCccccccCCeEEEEeecCCCCccCCCCCCCC
Q 010536 414 GYGLTESCSGCFTSLADVF---------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG 466 (508)
Q Consensus 414 ~YG~TE~~~~~~~~~~~~~---------------------------~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~G 466 (508)
.||+||+++.++....... ....++|+|+|+++++|+| +++..++.| +.|
T Consensus 336 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g--~~G 412 (576)
T 3gqw_A 336 CYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAER--VVG 412 (576)
T ss_dssp EEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTT--BCE
T ss_pred cCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCC--CeE
Confidence 9999999988776532210 0113799999999999999 888877655 899
Q ss_pred eEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536 467 EICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 467 El~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 508 (508)
||+|+|++++.||+++++.+.+.+.+|||+|||+|++ +||+
T Consensus 413 El~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~ 453 (576)
T 3gqw_A 413 HICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGY 453 (576)
T ss_dssp EEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTE
T ss_pred EEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCE
Confidence 9999999999999999998888889999999999999 6774
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2e-56 Score=460.29 Aligned_cols=385 Identities=21% Similarity=0.295 Sum_probs=303.3
Q ss_pred CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536 44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123 (508)
Q Consensus 44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~ 123 (508)
|+.++|+++++++|+++|+++. + +++||+||.++++++|.+|.+. +||+|+++++|+++++++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 5678999999999999999875 3 5799999999999999999987 89999999999999999999999
Q ss_pred HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCcee-eeHH
Q 010536 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSWE 202 (508)
Q Consensus 124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 202 (508)
++|++++|+++.++.+++.++++.++++++|++............. ..+..+.......... ........ ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc---ccccccccccchh
Confidence 9999999999999999999999999999999998755433221110 1111111000000000 00000000 0001
Q ss_pred HHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536 203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (508)
Q Consensus 203 ~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~ 281 (508)
...... ..........++++++|+|||||||.||||.++|+++...+......+ .+..++++++.+|++|.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 111101 001122345779999999999999999999999999999998887776 78899999999999999999
Q ss_pred HHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCC
Q 010536 282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360 (508)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
...+.+++.|+++++.+. ++..+++.++++++|+++++|++++.|++....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888899999999999874 999999999999999999999999998652100
Q ss_pred CCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-CcccCccc
Q 010536 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVG 439 (508)
Q Consensus 361 ~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~s~G 439 (508)
. ..++|.+++||+++++++.+++.+ +++++++.||+||+++.+....... ....+++|
T Consensus 272 -----~---------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 -----E---------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp -----S---------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred -----C---------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0 026899999999999999999988 4999999999999987655443322 23447899
Q ss_pred cccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536 440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 440 ~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 508 (508)
+|+++++++|+| ++ .++.|||+|+|+.++.||+++++.+.+ |.+|||+|||+|++|+||+
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~ 390 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGY 390 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSC
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCe
Confidence 999999999999 44 236899999999999999999999887 8899999999999999985
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.1e-56 Score=461.83 Aligned_cols=374 Identities=24% Similarity=0.339 Sum_probs=300.7
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536 40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118 (508)
Q Consensus 40 ~~~~ti~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~ 118 (508)
..+.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4568899999999999987 9999875 3 68999999999999998774 489999999999999999
Q ss_pred HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCcee
Q 010536 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198 (508)
Q Consensus 119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (508)
++||+++|++++||+|.++.+++.+++++++++++|++...... .....+..+ .+...
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~~-~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALERV-DVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEEE-ECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhcccccc-ccccc---------------
Confidence 99999999999999999999999999999999999998652110 001111111 11100
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~ 278 (508)
...........++++++|+|||||||.||||.++|+++...+......+ .+..+|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0011223345678999999999999999999999999999999888777 78899999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536 279 YDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (508)
Q Consensus 279 ~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.++.. ++.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+++.+...
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~----------------------- 264 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD----------------------- 264 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC-----------------------
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC-----------------------
Confidence 99874 788999999999886 4899999999 889999999999999987532110
Q ss_pred hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccC
Q 010536 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG 436 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 436 (508)
+ ....+++ ++|.+++||+++++++.+++.+.++..+++.||+||+++.++..... ....+
T Consensus 265 ----------~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~ 324 (505)
T 3nyq_A 265 ----------P-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRAG 324 (505)
T ss_dssp ----------H-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCTT
T ss_pred ----------c-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCCC
Confidence 0 1112233 78999999999999999999999999999999999998766554433 33448
Q ss_pred ccccccCCeEEEEeecCCCCccCC-CCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536 437 TVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 437 s~G~p~~~~~~~i~d~~~~~~~~~-~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~ 508 (508)
++|+|+++++++|+| +++..++. ..|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus 325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~ 397 (505)
T 3nyq_A 325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGY 397 (505)
T ss_dssp CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSC
T ss_pred CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCcc
Confidence 999999999999999 88877665 235899999999999999999999999999 699999999999999985
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.5e-53 Score=480.20 Aligned_cols=376 Identities=18% Similarity=0.264 Sum_probs=311.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536 42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (508)
Q Consensus 42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA 121 (508)
..++.++|+++++++|+++|+++. + +.+||+||.++++++|++|.+.|+++|++|+|+++|+++++++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 3 4799999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201 (508)
Q Consensus 122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
|+++|+++|||+|.++.+++.++++++++++++++......+.. .......+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence 99999999999999999999999999999999998765443211 111122333221100
Q ss_pred HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536 202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281 (508)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~ 281 (508)
. . ...........++++++|+|||||||.||||+++|+++.+. ......+ .+..++++++..|++|..+.
T Consensus 593 --~-~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 662 (1304)
T 2vsq_A 593 --F-E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT 662 (1304)
T ss_dssp --G-G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred --c-c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence 0 0 01112223456789999999999999999999999999876 3333333 67889999999999998888
Q ss_pred HHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536 282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (508)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.+.+..
T Consensus 663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------------- 715 (1304)
T 2vsq_A 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG--------------------------- 715 (1304)
T ss_dssp HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---------------------------
Confidence 788999999999999863 8999999999999999999999999885410
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-CceeeecccccCCcceeeccCCC---Cc
Q 010536 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV---FN 433 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~---~~ 433 (508)
. ..++ ++|.+++||+++++++.+.+.+.++ ..++|.||+||+++.++...... ..
T Consensus 716 -----------~--~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 774 (1304)
T 2vsq_A 716 -----------E--DWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI 774 (1304)
T ss_dssp -----------S--HHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSC
T ss_pred -----------h--hcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccC
Confidence 0 0112 7999999999999999999988774 78999999999998776554322 22
Q ss_pred ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------CCccccCcEEEEcCC
Q 010536 434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQPM 506 (508)
Q Consensus 434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDlg~~d~d 506 (508)
...++|+|+++++++|+| ++++.+|.| +.|||+|+|+++++||+++|+.|.+.|. ++||+|||+|++++|
T Consensus 775 ~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d 851 (1304)
T 2vsq_A 775 SSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPD 851 (1304)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred CCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence 336899999999999999 888877765 8999999999999999999999999982 349999999999999
Q ss_pred CC
Q 010536 507 EL 508 (508)
Q Consensus 507 G~ 508 (508)
|+
T Consensus 852 G~ 853 (1304)
T 2vsq_A 852 GT 853 (1304)
T ss_dssp SC
T ss_pred Ce
Confidence 95
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.2e-34 Score=280.76 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=175.8
Q ss_pred CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (508)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 298 (508)
.+++++|+|||||||.||||++||+++.+.+......+ .+.++|++++.+|++|.+|+..++.+++.|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 36789999999999999999999999999999888777 7889999999999999999988888999999998876
Q ss_pred CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHH
Q 010536 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR 378 (508)
Q Consensus 299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (508)
. ....++.++++++|++.++|+++..+++... ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence 4 2334678999999999999999999865210 01122
Q ss_pred HHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCcc
Q 010536 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458 (508)
Q Consensus 379 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~ 458 (508)
++||.+++||+++++++.+++++ ++.++++.||+||+++.++....+.... +++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 28999999999999999999987 4999999999999998877766554443 8899999999888754
Q ss_pred CCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536 459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL 508 (508)
Q Consensus 459 ~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 508 (508)
.|||+++|+.+ .+|||+|||+|++|+||+
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g~ 243 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNAF 243 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSEE
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCce
Confidence 69999998642 368999999999999874
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.1e-32 Score=273.39 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=182.4
Q ss_pred CCCC-CCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 010536 216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS 293 (508)
Q Consensus 216 ~~~~-~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~~l~~G~~ 293 (508)
.... +++++++|||||||.||+|.++|+++...+..+...+.. ..+..+|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 4455 889999999999999999999999998877666443322 2678899999999986555544 57788999999
Q ss_pred EEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHH
Q 010536 294 IGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372 (508)
Q Consensus 294 ~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (508)
+++.+ +++..+++.++++++|+++++|+++..|++.+........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~---------------------------------- 204 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR---------------------------------- 204 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence 98876 4999999999999999999999999999875443211100
Q ss_pred HHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeec
Q 010536 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452 (508)
Q Consensus 373 ~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~ 452 (508)
+ +++|.+++||+++++++.+++++.+|+.+++.||+||+++.++...... . ...|.+.++++++|+|.
T Consensus 205 -~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 205 -E--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp -S--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred -c--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence 1 3899999999999999999999999999999999999965533322211 1 23677888999999995
Q ss_pred CCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCC
Q 010536 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME 507 (508)
Q Consensus 453 ~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG 507 (508)
+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++|++|
T Consensus 273 ~~g~~~~--~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~g 313 (436)
T 3qov_A 273 ETGEPVP--EGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGK 313 (436)
T ss_dssp TTCSBCS--TTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSC
T ss_pred CCCCCCC--CCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCC
Confidence 5566555 458999999983 3345678999999999999997
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.6e-31 Score=269.87 Aligned_cols=245 Identities=16% Similarity=0.084 Sum_probs=186.8
Q ss_pred eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHH
Q 010536 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHI 278 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~ 278 (508)
..+++.... +........+++++++|||||||.||+|.++|+++...+..+...+.. ..+..+|++++.+|+ +|.
T Consensus 72 ~~~~l~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~ 147 (437)
T 2y27_A 72 TKGDLRDSY--PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFT 147 (437)
T ss_dssp CHHHHHHTT--TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSH
T ss_pred CHHHHHhcC--CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccc
Confidence 445554433 112334567889999999999999999999999998777655432211 267889999999998 677
Q ss_pred HHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536 279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357 (508)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
.++...+.++..|+++++.+. +++.+++.++++++|+++++|+++..|++.........
T Consensus 148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------------------- 207 (437)
T 2y27_A 148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-------------------- 207 (437)
T ss_dssp HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG--------------------
T ss_pred cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------------
Confidence 777778889999999987764 99999999999999999999999999876543211000
Q ss_pred cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcc-eeeccCCCCcccC
Q 010536 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIG 436 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~ 436 (508)
++ +++|.+++||+++++++.+++++.+|+.+++.||+||+++. +........ .
T Consensus 208 ---------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~ 261 (437)
T 2y27_A 208 ---------------VQ--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---D 261 (437)
T ss_dssp ---------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---S
T ss_pred ---------------cc--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---C
Confidence 00 38999999999999999999999889999999999998543 333222111 1
Q ss_pred ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcC-CCC
Q 010536 437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP-MEL 508 (508)
Q Consensus 437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~-dG~ 508 (508)
..+.+.+++.++|+|.+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++|+ ||+
T Consensus 262 g~~~~~~~~~~~i~d~~~g~~~~--~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~ 320 (437)
T 2y27_A 262 GPTIWEDHFYPEIIDPETGEVLP--DGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTAR 320 (437)
T ss_dssp SCEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSS
T ss_pred ceeEccCceEEEEEcCCCCCCCC--CCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCC
Confidence 25667789999999933465555 458999999982 34456789999999999999 685
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.98 E-value=2.2e-31 Score=269.35 Aligned_cols=246 Identities=15% Similarity=0.093 Sum_probs=186.8
Q ss_pred eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HH
Q 010536 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AH 277 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~ 277 (508)
...+++.... +........+++++++|||||||.||+|.++|+++..........+.. ..+..+|++++.+|+ +|
T Consensus 73 ~~~~~l~~~~--p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 73 STKNDLRDNY--PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp BCHHHHHTTT--TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSS
T ss_pred CcHHHHHhhC--CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCccc
Confidence 3455554433 112234467889999999999999999999999998776655442211 267889999999998 57
Q ss_pred HHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536 278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356 (508)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
..++...+.++..|+++++.+. +++.+++.|+++++|+++++|+++..|++.........
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------- 209 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------- 209 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------------------
Confidence 7777777888999999988764 99999999999999999999999999876443221000
Q ss_pred hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcc-eeeccCCCCccc
Q 010536 357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI 435 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~ 435 (508)
++ +++|.+++||+++++++.+++++.+|+.+++.||+||+++. +....... . .
T Consensus 210 ----------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~-~ 263 (443)
T 2y4o_A 210 ----------------AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-K-D 263 (443)
T ss_dssp ----------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-C-C
T ss_pred ----------------cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-C-C
Confidence 01 38999999999999999999999889999999999998543 33322211 1 1
Q ss_pred CccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCC-CC
Q 010536 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM-EL 508 (508)
Q Consensus 436 ~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d-G~ 508 (508)
+ .+.+.+++.++|+|.+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++|++ |+
T Consensus 264 g-~~~~~~~~~~~i~d~~~g~~~~--~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~ 322 (443)
T 2y4o_A 264 G-PVIWEDHFYPEIIDPVTGEVLP--DGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTAR 322 (443)
T ss_dssp S-EEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSS
T ss_pred c-eEEccCCeEEEEEcCCCCCCCC--CCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCC
Confidence 2 5557789999999933466555 458999999982 334567899999999999998 84
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=5.3e-29 Score=245.61 Aligned_cols=228 Identities=14% Similarity=0.112 Sum_probs=171.3
Q ss_pred CCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 010536 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG 295 (508)
Q Consensus 217 ~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~l~~G~~~~ 295 (508)
...+++++|+|||||||.||+|.++|+++...+......+.. .....+|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999988865433211 266789999999999 99999988777799999444
Q ss_pred EecCCHH-----------------------hHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010536 296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352 (508)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (508)
...+++. .+++.++++++|++.++|+++..|++.
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~----------------------- 222 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR----------------------- 222 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-----------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-----------------------
Confidence 3344666 788899999999999999999998642
Q ss_pred hhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHH-Hhc-CCceeeecccccCCcceeeccCC
Q 010536 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGLTESCSGCFTSLAD 430 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~ 430 (508)
......+++ ++|.+++||+++++++.++++ +.| ++.+++.||+||+++++.....
T Consensus 223 --------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 223 --------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp --------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred --------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 112223333 899999999999999999999 899 8999999999998876532211
Q ss_pred CCcccCccccc------cCCeEEEEeecCCCCccCCCCCCCCeEEEecC---cccccccCCcccccccccCCccccCc
Q 010536 431 VFNMIGTVGVP------MTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGD 499 (508)
Q Consensus 431 ~~~~~~s~G~p------~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~~~~~~~~gw~~TGD 499 (508)
.++|+| +|+++++|+|.+++..++. |+.|||+|++. ....+|...+..+.....+||..+|+
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~--G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~ 350 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVDSITAQTVEY--GERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRL 350 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEECTTTCSBCCT--TCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEE
T ss_pred -----ccCCCcccccCCCCCeEEEEECCCCCcCCCC--CCceEEEEEEcCcccccccccCCceEEEecCCCCCcCccc
Confidence 248999 9999999999336766654 49999999972 22445554444333333455555553
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.76 E-value=0.044 Score=55.62 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.6
Q ss_pred CCCCeEEEEecCCCC-CCcceeecchHHHHHH
Q 010536 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE 248 (508)
Q Consensus 218 ~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~~~ 248 (508)
.++.+.+..-||||| |.+|-|.+|...+-..
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 456677899999999 7899999999877553
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=95.92 E-value=0.099 Score=53.21 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=26.1
Q ss_pred CCCCeEEEEecCCCC-CCcceeecchHHHHHH
Q 010536 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE 248 (508)
Q Consensus 218 ~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~~~ 248 (508)
.++.+.++.-||||| |.||-|.+|...+-..
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 556778899999999 8899999999876653
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=95.30 E-value=0.063 Score=54.40 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=25.4
Q ss_pred CCCCeEEEEecCCCC-CCcceeecchHHHHH
Q 010536 218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA 247 (508)
Q Consensus 218 ~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~~ 247 (508)
.++.+.++.-||||| |.+|-|.+|...+-.
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 456677899999999 789999999987765
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.89 E-value=1.2 Score=43.70 Aligned_cols=125 Identities=16% Similarity=0.078 Sum_probs=88.2
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--HhHHHHHHHHHHcCCEEEe
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP 131 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~--~~~~~~~lA~~~~G~~~v~ 131 (508)
.++.++++..+ .|.+| -...+|.+.+...+..++..+...|+.++|++....+.. ...+..+++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34566655441 23333 224689999998888888888888999999999988853 4445567888999999987
Q ss_pred ccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010536 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (508)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 183 (508)
++. .+.+.+...++..++.+++........+.+.... ....++.++.-...
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 765 4788999999999999999887766655443211 12456666665443
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.11 E-value=1.4 Score=43.35 Aligned_cols=125 Identities=16% Similarity=0.061 Sum_probs=88.2
Q ss_pred CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--HhHHHHHHHHHHcCCEEEe
Q 010536 56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP 131 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~--~~~~~~~lA~~~~G~~~v~ 131 (508)
.++.++++..+ .|.+|. ...+|.+.+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34555654441 333332 24679999998888888888888999999999988863 4445567888899999888
Q ss_pred ccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010536 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV 183 (508)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 183 (508)
++.. ..+.+...++..++.+++........+.+.... ....++.++.-...
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7764 788999999999999999887766655443211 12456666665544
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.34 E-value=1.6 Score=42.83 Aligned_cols=124 Identities=10% Similarity=-0.021 Sum_probs=89.1
Q ss_pred CCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--cHhHHHHHHHHHHcCCEEEecc
Q 010536 58 NNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVPLY 133 (508)
Q Consensus 58 ~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n--~~~~~~~~lA~~~~G~~~v~l~ 133 (508)
+.++++..+ .|.+| -...+|.+.+...+..++..+...|+.++|++....+- ....+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655441 23333 23468999999999888888888999999999998875 3445567788899999998776
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCc-----cCCCCccEEEEecCCC
Q 010536 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-----RCCLYLKTIVSFANVS 184 (508)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 184 (508)
+. .++.+...++..++.+++........+.+... .....++.++.-....
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 218 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH 218 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence 54 77889999999999999988776665544321 1135677777665543
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=85.52 E-value=12 Score=37.09 Aligned_cols=122 Identities=11% Similarity=-0.010 Sum_probs=85.1
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh-HHHHHHHHHHcCCEEEec
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL 132 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~-~~~~~lA~~~~G~~~v~l 132 (508)
.|+.+|++..+ .|.+| -...+|.+.+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777776652 22222 2246899988877666544 4588999999988887533 234467788899998877
Q ss_pred cCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCC
Q 010536 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (508)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (508)
+ ..+++.+...++..++..++........+.+........++.++.-...
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 6 4788999999999999999998877776655443333356666665443
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.98 E-value=7.1 Score=36.99 Aligned_cols=104 Identities=10% Similarity=-0.007 Sum_probs=69.5
Q ss_pred CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--cHhHHHHHHHHHHcCCEEEe
Q 010536 56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVP 131 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n--~~~~~~~~lA~~~~G~~~v~ 131 (508)
.++.++++..+ .|.+|. ...+|.+.+...+..++..+...|+.++|++...+|- ..-.....+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 35565665542 233332 2467888888888877777777899999999999886 23334455566889995554
Q ss_pred ccCCCCHH-----------------------HHHHHHHhcCceEEEEcCCChhhH
Q 010536 132 LYDTLGAN-----------------------AVEFIINHAEVSIAFVQENKIPSI 163 (508)
Q Consensus 132 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~ 163 (508)
.+ ..+. ++...++..++.+++........+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 33 3444 666688999999998876655544
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=77.86 E-value=35 Score=34.14 Aligned_cols=122 Identities=7% Similarity=-0.112 Sum_probs=83.2
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH--HH-HHHHHHHcCCEEE
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--II-AMEACNSQAITYV 130 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~--~~-~~lA~~~~G~~~v 130 (508)
.|+.+|++..+ .|.+| -...+|.+.+...+..+... .++.++|++...+|-.-.+ .. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 56777776652 22222 22478999887776655443 4788999998888865333 22 4788899999988
Q ss_pred eccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhc---CccCCCCccEEEEecCC
Q 010536 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC---LPRCCLYLKTIVSFANV 183 (508)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 183 (508)
..+ ...++.+...++..++.+++........+.+. .......++.++.-...
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 46788999999999999999887666555432 22234567777665544
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=76.75 E-value=17 Score=36.55 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=81.2
Q ss_pred CCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH--HHHHHHHHHcCCEEEecc
Q 010536 58 NNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVPLY 133 (508)
Q Consensus 58 ~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~--~~~~lA~~~~G~~~v~l~ 133 (508)
+.+|++..+ .|.+| -...+|.+.+...+......+...++.++|++...+|-.-.+ ...+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 667776552 22222 225789998887766655443335788999998888765333 23356667 999888775
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCc---cCCCCccEEEEecCC
Q 010536 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (508)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 183 (508)
...++.+...++..++.+++........+..... .....++.++.-...
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 5688999999999999999988776666544321 133556666655443
No 47
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=68.87 E-value=55 Score=32.71 Aligned_cols=106 Identities=6% Similarity=-0.117 Sum_probs=78.2
Q ss_pred CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (508)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 298 (508)
++.++++....+..+ -..-.+|++.+...+..++..+... ++.++|++...++-+. -.++.+++++..|+..+...
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEccC
Confidence 466776654321111 1235689999999998888777443 6789999999888764 23346778899999988876
Q ss_pred C--CHHhHHHHhhhhcCeEEEecchHHHHHHH
Q 010536 299 G--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (508)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (508)
. ..+.+...++..++.+++..+.....+..
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 4 88999999999999999999887766543
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=68.52 E-value=32 Score=34.42 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=81.5
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH---HHHHHHHcCCEEE
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII---AMEACNSQAITYV 130 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~---~~lA~~~~G~~~v 130 (508)
.|+.+|++..+ .|.+| -...+|.+.+...+..++.. .++.++|++...+|..-.+-. .+++++..|+.++
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35677776552 22222 22478999888777666543 488999999998876544332 4788888999888
Q ss_pred eccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcC---ccCCCCccEEEEecCC
Q 010536 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (508)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (508)
..+ ...+..+...++..++..++........+.+.. ......++.++.-...
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 765 467888889999999999998876655544322 1223456666665544
No 49
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=68.42 E-value=22 Score=35.87 Aligned_cols=124 Identities=8% Similarity=0.001 Sum_probs=86.0
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH-hHHHHHHHHHHcCCEEEec
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP-EWIIAMEACNSQAITYVPL 132 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~-~~~~~~lA~~~~G~~~v~l 132 (508)
.|+.+|++..+ .|.+| -...+|.+.+...... ....++.++|++....|-+. -....+++.+..|+.++.+
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46777776652 22222 2246888877543221 22347899999998888753 3455677888899988877
Q ss_pred cC-CCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCc
Q 010536 133 YD-TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (508)
Q Consensus 133 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (508)
.. ...+..+...+++.++.++.........+.+........++.++.-.....
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPAS 339 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccCC
Confidence 54 467889999999999999999887777776665556677888777665433
No 50
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=67.91 E-value=50 Score=32.88 Aligned_cols=101 Identities=14% Similarity=0.082 Sum_probs=77.1
Q ss_pred CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010536 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (508)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 297 (508)
.++.++++.. .+| -.+|++.+...+..++..+.. .++.++|++...++-+. -.+..+++++..|+..+..
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 4567776542 222 468999999998888877744 36789999998888764 2334677889999998877
Q ss_pred cC--CHHhHHHHhhhhcCeEEEecchHHHHHHH
Q 010536 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (508)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (508)
.. ..+.+...++..++.+++..+.....+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 64 88999999999999999998887766544
No 51
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=67.56 E-value=46 Score=32.88 Aligned_cols=98 Identities=9% Similarity=-0.032 Sum_probs=76.4
Q ss_pred CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (508)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 298 (508)
++.++++. .+..+|++.+...+..++..+.. .++.++|++...++-+. -.+..+++++..|+..+...
T Consensus 20 pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~ 87 (509)
T 3ivr_A 20 PDRTAFMV---------DGVRLTHRDYLARAERLASGLLR--DGVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPVN 87 (509)
T ss_dssp TTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEecC
Confidence 56677654 12579999999999998887744 26789999999888764 23346778899999988876
Q ss_pred C--CHHhHHHHhhhhcCeEEEecchHHHHHHH
Q 010536 299 G--DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (508)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (508)
. ..+.+...++..++.+++..+.....+..
T Consensus 88 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 88 YRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp TTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred CCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 4 88999999999999999999887766443
No 52
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=66.97 E-value=28 Score=35.66 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=85.4
Q ss_pred CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH-HHHHHHHHHcCCEEEec
Q 010536 56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (508)
.|+.+|++..+ .|.+|. ...+|.+.+...+.. ....++.++|++....+-+.+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46778876653 233332 246788777543322 2335789999999998876443 44578888899988776
Q ss_pred c-CCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCc
Q 010536 133 Y-DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185 (508)
Q Consensus 133 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (508)
+ ....++.+...++..++..++........+.+........++.++.-.....
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDILS 289 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcCC
Confidence 3 3567899999999999999998877766665544455567788777765543
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=66.22 E-value=41 Score=33.97 Aligned_cols=123 Identities=9% Similarity=-0.121 Sum_probs=83.0
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH--HHHHHHHcCCEEEe
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII--AMEACNSQAITYVP 131 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~--~~lA~~~~G~~~v~ 131 (508)
.|+.+|++..+ .|.+| -...+|.+.+...+..++. ..++.++|++...+|-.-.+-. .+++.+..|+.++.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46777877652 22222 2257899998887766654 4588999999999887755433 37888899999888
Q ss_pred ccCCC---CHHHHHHHHHhcCceEEEEcCCChhhHhhcC------ccCCCCccEEEEecCC
Q 010536 132 LYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCL------PRCCLYLKTIVSFANV 183 (508)
Q Consensus 132 l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 183 (508)
..+.. .+..+...++..++.++.........+.+.. ...+..++.++.-...
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76543 6778888999999999887665544443321 1233556666665544
No 54
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=66.19 E-value=36 Score=34.14 Aligned_cols=124 Identities=10% Similarity=-0.062 Sum_probs=81.0
Q ss_pred CCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh-HHHHHHHHHHcCCEEEecc
Q 010536 57 PNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLY 133 (508)
Q Consensus 57 p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~-~~~~~lA~~~~G~~~v~l~ 133 (508)
++.+|++..+ .|.+| -...+|.+.+...+......+...++.++|++...+|-.-. .+...++++..|+..+.+.
T Consensus 189 ~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (550)
T 3rix_A 189 DKTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY 266 (550)
T ss_dssp TTSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 3556665542 22222 22468888887766555444434578899999888886533 2445677788899888775
Q ss_pred CCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCc---cCCCCccEEEEecCC
Q 010536 134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV 183 (508)
Q Consensus 134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 183 (508)
...++.+...++..++..++........+..... .....++.++.-...
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 -RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp -SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 5788999999999999999988776665544322 223566766665544
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=65.90 E-value=32 Score=34.16 Aligned_cols=120 Identities=14% Similarity=0.034 Sum_probs=78.2
Q ss_pred CCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH--HHHHHHHcCCEEEec
Q 010536 57 PNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII--AMEACNSQAITYVPL 132 (508)
Q Consensus 57 p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~--~~lA~~~~G~~~v~l 132 (508)
|+.+|++..+ .|.+| -...+|.+.+...+..++.. .++.++|++...+|-.-.+-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 5666666552 23222 22468999888777666544 488999999998887644332 244455 88888766
Q ss_pred cCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcC---ccCCCCccEEEEecCC
Q 010536 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (508)
Q Consensus 133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (508)
+ ...+..+...++..++.++.........+.... ......++.++.-...
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 4 578899999999999999998876665544321 1233456666665544
No 56
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=65.29 E-value=36 Score=33.67 Aligned_cols=123 Identities=9% Similarity=-0.024 Sum_probs=81.0
Q ss_pred CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH-HHHHHHHHHcCCEEEec
Q 010536 56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (508)
.|+.+|++..+ .|.+|. ...+|.+.+...+..... ..++.++|++...+|-+..+ +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 45666766552 232332 246898888776655443 45889999999988875333 45578888999998887
Q ss_pred cCC--CCHHHHHHHHHhcCceEEEEcCCChhhHhhcC---ccCCCCccEEEEecCC
Q 010536 133 YDT--LGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (508)
Q Consensus 133 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (508)
+.. ..+..+...++..++.+++........+.... ......++.++.-...
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 653 56788999999999999998876665543322 1233456666665443
No 57
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=64.82 E-value=70 Score=31.88 Aligned_cols=100 Identities=5% Similarity=-0.142 Sum_probs=75.0
Q ss_pred CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (508)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 298 (508)
++.++++....+ ....+|++.+...+..++..+.. .++.++|++...++-+. -.+...++++..|+..+...
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEecC
Confidence 455665543211 24578999999988888877643 36788999999888664 33345778899999988876
Q ss_pred C--CHHhHHHHhhhhcCeEEEecchHHHHH
Q 010536 299 G--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (508)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (508)
. ..+.+...++..++.+++..+.....+
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 4 789999999999999999988876554
No 58
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=63.04 E-value=57 Score=32.23 Aligned_cols=123 Identities=8% Similarity=-0.056 Sum_probs=82.0
Q ss_pred CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH-HHHHHHHHHcCCEEEec
Q 010536 56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (508)
.++.+|++..+ .|.+|. ...+|.+.+...+..++. ..++..+|++....|-+..+ +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 45667776552 233332 246888888776655543 45788999999988876433 44578889999998877
Q ss_pred cCC--CCHHHHHHHHHhcCceEEEEcCCChhhHhhcC---ccCCCCccEEEEecCC
Q 010536 133 YDT--LGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANV 183 (508)
Q Consensus 133 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (508)
+.. ..+..+...++..++.+++........+.... ......++.++.....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 543 46788889999999999998877665554332 2233455666555443
No 59
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=62.77 E-value=84 Score=31.92 Aligned_cols=123 Identities=13% Similarity=-0.049 Sum_probs=82.0
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh--HHH-HHHHHHHcCCEEE
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WII-AMEACNSQAITYV 130 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~--~~~-~~lA~~~~G~~~v 130 (508)
.|+.+|++..+ .|.+| -...+|.+.+...+...... .++.++|++....|-... ... .+++++..|+.++
T Consensus 182 ~~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 182 PADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred CCCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 35677776552 22222 23578998887777665544 378899999999885433 332 4788888899888
Q ss_pred eccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcC-----ccCCCCccEEEEecCCC
Q 010536 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVS 184 (508)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 184 (508)
..+. .....+...++..++.++.........+.+.. ......++.++.-....
T Consensus 257 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l 314 (617)
T 3rg2_A 257 LAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARL 314 (617)
T ss_dssp ECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCC
T ss_pred EeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcC
Confidence 7654 57788888999999999998876655543321 11345677776665543
No 60
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=61.55 E-value=75 Score=31.97 Aligned_cols=124 Identities=6% Similarity=-0.124 Sum_probs=79.7
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH--HHHHHHHHcCCEEEe
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI--IAMEACNSQAITYVP 131 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~--~~~lA~~~~G~~~v~ 131 (508)
.|+.+|++..+ .|.+| -...+|.+ +...... ......++.++|++....|-...+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 45667776552 22222 22467887 4331111 1124468899999988888764443 346778888988877
Q ss_pred ccC-CCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCc--cCCCCccEEEEecCCC
Q 010536 132 LYD-TLGANAVEFIINHAEVSIAFVQENKIPSILSCLP--RCCLYLKTIVSFANVS 184 (508)
Q Consensus 132 l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 184 (508)
... ...++.+...++..++..++........+.+... .....++.++......
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESL 334 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcC
Confidence 653 6789999999999999999988776666654321 1235667776665443
No 61
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=59.89 E-value=93 Score=30.18 Aligned_cols=107 Identities=9% Similarity=-0.025 Sum_probs=77.0
Q ss_pred CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010536 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (508)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 297 (508)
.++.++++.........-....+|.+.+...+..++..+... +. ++|++...++-+.- .++..++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEee
Confidence 356777765542211111346799999999999988887443 33 78998888876642 334677889999998877
Q ss_pred cC-----CHHhHHHHhhhhcCeEEEecchHHHHHHH
Q 010536 298 RG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYT 328 (508)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 328 (508)
.. ..+.+...++..++.+++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788999999999999999887766543
No 62
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=59.75 E-value=85 Score=30.86 Aligned_cols=98 Identities=16% Similarity=0.025 Sum_probs=71.9
Q ss_pred CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (508)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 298 (508)
++.++++.. . .+..+|++.+...+..++..+.. .+..++|++...++-+.- .+..+++++..|+..+...
T Consensus 16 p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 16 PDHCALAVP---A----RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLN 85 (504)
T ss_dssp TTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEEC
T ss_pred CCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecC
Confidence 456666542 1 13578999999998888877644 367889999998887643 2446788899999988876
Q ss_pred C--CHHhHHHHhhhhcCeEEEe--cchHHHHH
Q 010536 299 G--DVRYLMEDIQELKPTMFSG--VPRVYDRI 326 (508)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~--~P~~~~~l 326 (508)
. ..+.+...++..+++.++. .+.....+
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 4 7889999999999999988 66655443
No 63
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=58.87 E-value=48 Score=30.79 Aligned_cols=65 Identities=6% Similarity=0.006 Sum_probs=49.5
Q ss_pred HHhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 94 L~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
+.+.| +++|+.|.+....+-.-..+.++|..+|..++.+-|...+......++..++.+++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34555 488988755556677778888888889998877766666666677889999999999754
No 64
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=57.96 E-value=94 Score=31.15 Aligned_cols=85 Identities=8% Similarity=-0.046 Sum_probs=67.1
Q ss_pred eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeE
Q 010536 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (508)
Q Consensus 238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (508)
-.+|++.+...+..++..+.. .++.++|++...++-+. -.++..++++..|+..+.... ..+.+...++..++.+
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~ 139 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARM 139 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSE
T ss_pred ceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCE
Confidence 468999999888888776643 36788999998888764 233457788999999888764 7889999999999999
Q ss_pred EEecchHHHH
Q 010536 316 FSGVPRVYDR 325 (508)
Q Consensus 316 ~~~~P~~~~~ 325 (508)
++..+.....
T Consensus 140 li~~~~~~~~ 149 (563)
T 1amu_A 140 LLTQKHLVHL 149 (563)
T ss_dssp EEECGGGHHH
T ss_pred EEEcCchhhh
Confidence 9998866543
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=57.35 E-value=82 Score=32.43 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh-hccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEE
Q 010536 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV-VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF 296 (508)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~ 296 (508)
.++.++++... ..+| ....+|.+.+...+..++..+. . .+..++|++...+|... -.++.+++++..|+..+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~--~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYS--MGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHT--SCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEe
Confidence 35667766542 2122 2357899999999998888774 3 36789999999998774 334467889999998887
Q ss_pred ecC--CHHhHHHHhhhhcCeEEEecchH
Q 010536 297 WRG--DVRYLMEDIQELKPTMFSGVPRV 322 (508)
Q Consensus 297 ~~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (508)
... .++.+...++..++.+++.....
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 753 88999999999999999987654
No 66
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=53.02 E-value=61 Score=32.17 Aligned_cols=87 Identities=3% Similarity=-0.133 Sum_probs=69.0
Q ss_pred eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeE
Q 010536 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (508)
Q Consensus 238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (508)
..+|+..+...+..++..+.. .++.++|++...++-+.- .+...++++..|+..+.... ..+.+...++..++..
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 468999999998888877643 367889999988887642 23457788999999887764 7899999999999999
Q ss_pred EEecchHHHHHH
Q 010536 316 FSGVPRVYDRIY 327 (508)
Q Consensus 316 ~~~~P~~~~~l~ 327 (508)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999888766543
No 67
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=52.85 E-value=71 Score=29.78 Aligned_cols=70 Identities=9% Similarity=-0.013 Sum_probs=54.1
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 89 RFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 89 ~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
.+.....+.-+++|.+..+.....-.-..+.++|..+|..+..+=|...+......++..++++++++..
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3333333333688887777777788888899999999998888877777777788899999999998753
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=50.80 E-value=93 Score=31.34 Aligned_cols=98 Identities=11% Similarity=-0.036 Sum_probs=74.2
Q ss_pred CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010536 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (508)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 297 (508)
.++.++++..... | ....+|.+.+...+..++..+.. .++.++|++...++-+.- -+..+++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVK--HGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeC
Confidence 4677787654321 2 24678999999999888877744 377899999998886642 234577889999988877
Q ss_pred cC--CHHhHHHHhhhhcCeEEEecchH
Q 010536 298 RG--DVRYLMEDIQELKPTMFSGVPRV 322 (508)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (508)
.. ..+.+...++..++.+++..+..
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~~ 168 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAED 168 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESST
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecch
Confidence 64 88999999999999999986653
No 69
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=50.63 E-value=73 Score=31.39 Aligned_cols=86 Identities=14% Similarity=0.039 Sum_probs=68.7
Q ss_pred eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeE
Q 010536 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (508)
Q Consensus 238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (508)
-.+|++.+...+..++..+... ++.++|++...++-+. -.+..+++++..|+..+.... ..+.+...++..++.+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 3689999999998888777443 7789999998888763 334467888999999888764 8899999999999999
Q ss_pred EEecchHHHHH
Q 010536 316 FSGVPRVYDRI 326 (508)
Q Consensus 316 ~~~~P~~~~~l 326 (508)
++..+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99988765443
No 70
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=50.14 E-value=1.2e+02 Score=31.17 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=73.1
Q ss_pred CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298 (508)
Q Consensus 219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~ 298 (508)
++.++++... ..+| ....+|++.+...+..++..+.. .++.++|++...+|.+.- ..+.+++++..|+..+...
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~--~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLD--LGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHH--HTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECC
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecC
Confidence 4667766432 2222 23578999999998888877643 367899999999987743 3446788899999988775
Q ss_pred C--CHHhHHHHhhhhcCeEEEecchH
Q 010536 299 G--DVRYLMEDIQELKPTMFSGVPRV 322 (508)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~~~~~P~~ 322 (508)
. .++.+...++..++.+++.....
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~~ 189 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADEG 189 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESEE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence 4 88999999999999999886543
No 71
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=49.81 E-value=52 Score=30.82 Aligned_cols=121 Identities=13% Similarity=0.041 Sum_probs=74.7
Q ss_pred HhCCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh-HHHHHHHHHHcCCEEE
Q 010536 54 KRIPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYV 130 (508)
Q Consensus 54 ~~~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~-~~~~~lA~~~~G~~~v 130 (508)
+.+.|.+|++..+ .|.+|. ...+|.+.+...+..++. ..+++++|++...+|-.-. .+..++..+..|+..+
T Consensus 33 ~w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~ 107 (358)
T 4gs5_A 33 KWLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELT 107 (358)
T ss_dssp HHHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEE
Confidence 3456778876652 233332 247899988877665554 4588999999988876533 3445566677788877
Q ss_pred eccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCc--cCCCCccEEEEecC
Q 010536 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP--RCCLYLKTIVSFAN 182 (508)
Q Consensus 131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 182 (508)
...+.... ...++..++..+.........+.+... .....++.++.-..
T Consensus 108 ~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 108 VTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp EECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred ecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEccc
Confidence 77664332 345677888888877665555543322 22345555555443
No 72
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=46.43 E-value=1e+02 Score=30.25 Aligned_cols=103 Identities=8% Similarity=-0.071 Sum_probs=71.1
Q ss_pred CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh--HHHHHHHHHHcCCEEEe
Q 010536 56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVP 131 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~--~~~~~lA~~~~G~~~v~ 131 (508)
.|+.+|++..+ .|.+| -...+|.+.+...+..++..+ ++.++|++...+|..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46777776652 23333 224789999988877766554 78889998887776432 23457888899999887
Q ss_pred ccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhh
Q 010536 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165 (508)
Q Consensus 132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 165 (508)
.. ....+.+...+ ..++..++........+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 56777777777 6788888887766555544
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=46.15 E-value=1.1e+02 Score=33.32 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=75.7
Q ss_pred CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010536 218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW 297 (508)
Q Consensus 218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~ 297 (508)
.++.++++.. .+| ..+|++.+...+..++..+.. .++.++|++...++-+. -.++.+++++..|+..+..
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 4577776642 222 468999999988888877644 36789999999888763 3334678899999998887
Q ss_pred cC--CHHhHHHHhhhhcCeEEEecchHHHHH
Q 010536 298 RG--DVRYLMEDIQELKPTMFSGVPRVYDRI 326 (508)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l 326 (508)
.. .++.+...++..++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 64 889999999999999999988765544
No 74
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=45.67 E-value=60 Score=29.08 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (508)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~ 116 (508)
.++++..+..|+...+... |...-++-..|..++.+.+.+.+.+|.+.|+ ...++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 3566666789999888887 7777777789999999999999999999866 4666777776654
No 75
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.38 E-value=1.6e+02 Score=25.24 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH--HHHHHH-HHHHHHHcCcEEEEecC--CHHhHHHHhhhhc
Q 010536 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA--HIYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELK 312 (508)
Q Consensus 238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~--~~~g~~-~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~ 312 (508)
+.++-..+...+..+...+...........+++...+-. |..|.. .....-..|..++.... .++.+++.+++++
T Consensus 64 ~~~aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~ 143 (215)
T 3ezx_A 64 IMMSGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK 143 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC
Q ss_pred CeEEEe------cchH--HHHHHHHHHHHhh--cCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhC
Q 010536 313 PTMFSG------VPRV--YDRIYTGISNKIS--SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 382 (508)
Q Consensus 313 ~t~~~~------~P~~--~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 382 (508)
++++.. ++.+ +..+++.++.... ..+
T Consensus 144 ~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~-------------------------------------------- 179 (215)
T 3ezx_A 144 GEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVK-------------------------------------------- 179 (215)
T ss_dssp TSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSE--------------------------------------------
T ss_pred CCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCE--------------------------------------------
Q ss_pred CcEEEEEEecCCCCHHHHHHH
Q 010536 383 GRLQAMLSGAAPLPIHVEEFL 403 (508)
Q Consensus 383 ~~l~~i~~gG~~~~~~~~~~~ 403 (508)
+++||.+++++..+.+
T Consensus 180 -----v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 180 -----CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp -----EEEESSSCCHHHHHHH
T ss_pred -----EEEECCCCCHHHHHHh
No 76
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=38.85 E-value=1.7e+02 Score=26.63 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 94 L~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
+.+.| +++|+.|+. ...+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 34455 467776655 55555666677778899998877766555556666788999999998763
No 77
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=38.63 E-value=83 Score=29.08 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=51.7
Q ss_pred eeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEE
Q 010536 78 LTYQEVYDAAIRFG---SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (508)
Q Consensus 78 ~Ty~~l~~~~~~~A---~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (508)
+++.+......... +.|...++++|++|+|...-+.-..+++++....|+.++.++.. .++ ..+....++..+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 67777654433332 23455689999999999987777777787777778877766643 333 3456677777776
Q ss_pred Ec
Q 010536 155 VQ 156 (508)
Q Consensus 155 ~~ 156 (508)
-.
T Consensus 214 ~~ 215 (348)
T 4eez_A 214 NS 215 (348)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 78
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=37.80 E-value=1.9e+02 Score=28.74 Aligned_cols=87 Identities=9% Similarity=-0.115 Sum_probs=68.3
Q ss_pred eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--C-------HHhHHHHh
Q 010536 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--D-------VRYLMEDI 308 (508)
Q Consensus 238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~-------~~~~~~~i 308 (508)
-.+|++.+...+..++..+.. .++.++|++...++-+. -.+..+++++..|+..+.... . .+.+...+
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l 124 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLS--LNLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLL 124 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHH
Confidence 578999999999988887744 26789999999988764 233467889999999887753 3 57888899
Q ss_pred hhhcCeEEEecchHHHHHH
Q 010536 309 QELKPTMFSGVPRVYDRIY 327 (508)
Q Consensus 309 ~~~~~t~~~~~P~~~~~l~ 327 (508)
+..++..++........+.
T Consensus 125 ~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 125 ASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHCCSEEEECGGGHHHHH
T ss_pred HhcCCCEEEecHHHHHHHH
Confidence 9999999999887766543
No 79
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=37.33 E-value=89 Score=29.36 Aligned_cols=60 Identities=12% Similarity=-0.046 Sum_probs=40.1
Q ss_pred HHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccC-----CCCHHHHHHHHHhcC--ceEEEE
Q 010536 93 AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD-----TLGANAVEFIINHAE--VSIAFV 155 (508)
Q Consensus 93 ~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~vi~ 155 (508)
.|...++++||.|.+-.+....+ .-++...|+.++.++. ..+.+.+...+..-+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 34455789999998877766554 3456678988776653 246788888774444 666663
No 80
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=36.99 E-value=1e+02 Score=30.32 Aligned_cols=81 Identities=9% Similarity=-0.057 Sum_probs=63.2
Q ss_pred eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeE
Q 010536 238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTM 315 (508)
Q Consensus 238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (508)
-.+|++.+...+..++..+.. .+..++|++...++-+. -.+...++++..|+..+.... ..+.+...++..++.+
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDS--LALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 358999999988888877644 26778898888877663 233457788999998887754 8899999999999999
Q ss_pred EEecch
Q 010536 316 FSGVPR 321 (508)
Q Consensus 316 ~~~~P~ 321 (508)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 81
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=35.33 E-value=82 Score=35.55 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=82.5
Q ss_pred CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH-HHHHHHHHHcCCEEEec
Q 010536 56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPL 132 (508)
Q Consensus 56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~-~~~~lA~~~~G~~~v~l 132 (508)
.|+.+|++..+ .|.+|. ...+|.+.+... .......++.++|++....+-+.+. +.-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 57788877653 232332 246788877532 1122334788999998888876554 44577888899988877
Q ss_pred cC--CCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCC
Q 010536 133 YD--TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184 (508)
Q Consensus 133 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (508)
++ ..+++.+...++..++.+++........+..........++.++.-+...
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 65 46788999999999999998887766665443333335667776665543
No 82
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=34.94 E-value=1.9e+02 Score=26.18 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=44.5
Q ss_pred HHhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 94 MRSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 94 L~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
+.+.| +++|+.|+. ...+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 466766554 55555566777788889998877666555555666788999999998763
No 83
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=34.69 E-value=1.7e+02 Score=29.13 Aligned_cols=107 Identities=10% Similarity=-0.073 Sum_probs=72.6
Q ss_pred eEeeHHHHHHHHHHHHHHHH-----hCCCCCCCEEEEEcCCcHhH-HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcC
Q 010536 76 VWLTYQEVYDAAIRFGSAMR-----SRGVNPGDRCGIYGSNCPEW-IIAMEACNSQAITYVPLYDTLGANAVEFIINHAE 149 (508)
Q Consensus 76 ~~~Ty~~l~~~~~~~A~~L~-----~~gv~~gd~Vai~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 149 (508)
..+|.+.+...+..++..+. ...+...+++....+..... +..++..+..|+..+........+.+...++..+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 46899999988888877665 23567788888777766543 4446778888988876654444567788899999
Q ss_pred ceEEEEcCCChhhHhhcCccCCCCccEEEEecCC
Q 010536 150 VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183 (508)
Q Consensus 150 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (508)
+.+++........+. ........++.++.-...
T Consensus 273 ~t~~~~~P~~l~~~~-~~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 273 VTHAGIVPSLLDQTG-LVPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp CCEEEECHHHHHHHT-CCGGGSTTCCEEEEESSC
T ss_pred CCEEEcCHHHHhhcc-cCccccCceEEEEEecCC
Confidence 999888765444332 222334566766665544
No 84
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=32.92 E-value=2.7e+02 Score=25.01 Aligned_cols=63 Identities=10% Similarity=0.072 Sum_probs=44.1
Q ss_pred HhCC-CCCCC--EEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 95 RSRG-VNPGD--RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 95 ~~~g-v~~gd--~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
.+.| +++|+ .|+. ...+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 56666 4433 45555556677778899998877666555566667788899999998865
No 85
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=32.86 E-value=2.7e+02 Score=25.06 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=45.2
Q ss_pred HhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 95 ~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
.+.| +++|+.|+... .+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 46777666654 455556677778899998887766655566667888999999999863
No 86
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=32.40 E-value=1.7e+02 Score=26.12 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (508)
Q Consensus 48 ~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~ 116 (508)
++++..+..|+...+... |...-++-.-+|.++.+.+.+.+..|.+.|+ ...++.-|+...+
T Consensus 22 v~~~i~~~lp~~~~iy~~---D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~----~~iVIACNTa~~~ 83 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFG---DIARIPYGTKSRATIQKFAAQTAKFLIDQEV----KAIIIACNTISAI 83 (268)
T ss_dssp HHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCChHHH
Confidence 455556788988888877 7766677778999999999999999998876 4666667776653
No 87
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=32.33 E-value=1e+02 Score=27.69 Aligned_cols=63 Identities=8% Similarity=-0.064 Sum_probs=49.8
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (508)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~ 116 (508)
.++++..+..|+...+... |...-++-.-++.++.+.+.+.+.+|.+.|+ ...++.-|+...+
T Consensus 38 tv~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~----d~IVIACNTa~~~ 100 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQI----DMLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCChhHH
Confidence 3456666788999898888 7766677778999999999999999988765 4677777776654
No 88
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=31.79 E-value=2.3e+02 Score=27.29 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=48.7
Q ss_pred HhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcC
Q 010536 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (508)
Q Consensus 95 ~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (508)
.+.| +++|....+....+-.-..+.++|..+|..++.+-|...+......++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47776655556667777888888999999888776766667777788999999999974
No 89
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=31.10 E-value=2.6e+02 Score=25.40 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=46.2
Q ss_pred HhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 95 ~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
.+.| +++|....+....+-.-..+.++|..+|..++.+-|...+......++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4555 466754444455666777778888899998877766655666667888999999998753
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=30.72 E-value=2.1e+02 Score=26.47 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=43.4
Q ss_pred hCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 96 SRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 96 ~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
+.| +++|+.|+.... +-.-..+.++|..+|..++.+-|...+......++..++++++++..
T Consensus 71 ~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 71 KDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344 467776655543 55556667777889998777666555566667888899999998753
No 91
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=29.74 E-value=1.9e+02 Score=26.30 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=47.8
Q ss_pred eeHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEc-CCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEE
Q 010536 78 LTYQEVYDAAIRF--G-SAMRSRGVNPGDRCGIYG-SNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (508)
Q Consensus 78 ~Ty~~l~~~~~~~--A-~~L~~~gv~~gd~Vai~~-~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (508)
+++.+........ | +.|...++++|++|+|.. .-.+-..++.+|- ..|+.++.+. +.++ ..+++..++..+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 6777765443332 2 334556899999999997 5556666666654 5788766554 3445 556677888876
Q ss_pred EEc
Q 010536 154 FVQ 156 (508)
Q Consensus 154 i~~ 156 (508)
+-.
T Consensus 201 i~~ 203 (321)
T 3tqh_A 201 INY 203 (321)
T ss_dssp EET
T ss_pred EeC
Confidence 643
No 92
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=29.71 E-value=2e+02 Score=25.42 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (508)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~ 115 (508)
.++++..+..|+...+... |...-++-..++.++.+++.+.+..|.+.|+ ...++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTas~ 78 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI----KMLVIACNTATA 78 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhhH
Confidence 3556666789988888777 6655555567899999999999999998765 456666666654
No 93
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=29.04 E-value=1.5e+02 Score=26.91 Aligned_cols=72 Identities=7% Similarity=0.025 Sum_probs=47.3
Q ss_pred eeHHHHHHHHHHHHH---HHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEE
Q 010536 78 LTYQEVYDAAIRFGS---AMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (508)
Q Consensus 78 ~Ty~~l~~~~~~~A~---~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (508)
+++.+.......++. .|...++++|++|+|+..-..-..++.+|- ..|+.++.+. . .+++. +++..+++.++
T Consensus 116 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~--~~~~~-~~~~lGa~~v~ 190 (315)
T 3goh_A 116 LSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-A--SLSQA-LAAKRGVRHLY 190 (315)
T ss_dssp SCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-S--SCCHH-HHHHHTEEEEE
T ss_pred CCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-C--hhhHH-HHHHcCCCEEE
Confidence 788887544443332 333458999999999999556666666664 5688776666 2 33333 34667888877
No 94
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=28.85 E-value=2.9e+02 Score=25.19 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=46.4
Q ss_pred HhCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 95 RSRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 95 ~~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
.+.| +++++.|+.. ..+-.-..+.++|..+|..++.+-|...+......++..++++++++..
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 4445 5677776554 4566667777888889998887766666666677889999999999864
No 95
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.64 E-value=1.2e+02 Score=28.00 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEcCCcH------hHHHHHHH-HHHcCCEEEeccCC------------CCHHHHHHHHHhcCceEEEEcCC
Q 010536 98 GVNPGDRCGIYGSNCP------EWIIAMEA-CNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 98 gv~~gd~Vai~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
-+++||+|+|+.|.+. +.+-..+. +-..|..++.-..- ...+++...+.+-++++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999853 22222222 34567776543211 12446777788889999998753
No 96
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=27.16 E-value=2.2e+02 Score=26.31 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHh--CCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcC
Q 010536 93 AMRS--RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (508)
Q Consensus 93 ~L~~--~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (508)
.|.+ .++++|++|+|...-.+-..++.+|-...|+.++.++. +.+++. +++..+++.++-..
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEecc
Confidence 3555 78999999999999667777777776543887666654 344444 45677888777543
No 97
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=27.04 E-value=2.1e+02 Score=27.49 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=29.6
Q ss_pred EEEcCCcHhHHHHH-HHHHHcCCEEEeccCCCCHH--HHHHHHHhcCceEEEEcCCChhhHhhcC
Q 010536 106 GIYGSNCPEWIIAM-EACNSQAITYVPLYDTLGAN--AVEFIINHAEVSIAFVQENKIPSILSCL 167 (508)
Q Consensus 106 ai~~~n~~~~~~~~-lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 167 (508)
+++..++.+.+.+. .++...|-.++..++..... .+...+...++++++++....+.+.+.+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 44555555554333 33444454444444443221 1222555666777666655555444444
No 98
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.81 E-value=2.4e+02 Score=26.32 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=39.5
Q ss_pred HHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCC----CCHHHHHHHHHhc--CceEEEEcC
Q 010536 94 MRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHA--EVSIAFVQE 157 (508)
Q Consensus 94 L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 157 (508)
+...++++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++++...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334457889998888877666543 344578777666542 4677888877754 566666543
No 99
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=26.27 E-value=2.1e+02 Score=26.28 Aligned_cols=32 Identities=3% Similarity=-0.170 Sum_probs=13.2
Q ss_pred CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEec
Q 010536 101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132 (508)
Q Consensus 101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l 132 (508)
+||.|.+..+....+.....++...|+.++.+
T Consensus 88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 119 (384)
T 1eg5_A 88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYV 119 (384)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEECCCCchHHHHHHHHHHhcCCEEEEE
Confidence 45555444443333333333333445444433
No 100
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=26.23 E-value=3.1e+02 Score=24.95 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=33.8
Q ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEecc--C----CCCHHHHHHHHHh----cCceEEEEcC
Q 010536 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLY--D----TLGANAVEFIINH----AEVSIAFVQE 157 (508)
Q Consensus 99 v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~--~----~~~~~~l~~~l~~----~~~~~vi~~~ 157 (508)
+++||.|.+..+........ +...|+.++.++ . ....+++...++. -++++++...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46788887776665544433 566777666655 2 2356777777764 2555555543
No 101
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=26.19 E-value=2.1e+02 Score=26.13 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEE
Q 010536 78 LTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (508)
Q Consensus 78 ~Ty~~l~~~~~~~---A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (508)
+++.+........ -+.|...++++|++|+|.....+-..++.+|- ..|+.++.++. +.+++. +++..++..++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEEE
Confidence 6777765332221 23455568999999999988666777666665 46887766654 344444 56777887776
Q ss_pred Ec
Q 010536 155 VQ 156 (508)
Q Consensus 155 ~~ 156 (508)
..
T Consensus 216 ~~ 217 (340)
T 3s2e_A 216 NA 217 (340)
T ss_dssp ET
T ss_pred eC
Confidence 54
No 102
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=25.74 E-value=2.2e+02 Score=26.18 Aligned_cols=78 Identities=9% Similarity=-0.050 Sum_probs=49.7
Q ss_pred eeHHHHHHHHHHH---HHHHHhC--CCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceE
Q 010536 78 LTYQEVYDAAIRF---GSAMRSR--GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152 (508)
Q Consensus 78 ~Ty~~l~~~~~~~---A~~L~~~--gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 152 (508)
+++.+........ -+.|.+. ++++|++|+|...-..-..++.+|-..-|+.++.++. +.+++ .+++..+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 5666654333221 2334453 7899999999998667777777777665677666654 34443 4567788887
Q ss_pred EEEcCC
Q 010536 153 AFVQEN 158 (508)
Q Consensus 153 vi~~~~ 158 (508)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 775543
No 103
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=25.64 E-value=2e+02 Score=26.47 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEE
Q 010536 78 LTYQEVYDAAIRF---GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF 154 (508)
Q Consensus 78 ~Ty~~l~~~~~~~---A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 154 (508)
+++.+........ -+.|...++++|++|+|...-.+-..++.+|- ..|+.++.+... .+++. +++..+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 6777765322221 13455668999999999987556666666665 568877666543 33333 45667888777
No 104
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=25.50 E-value=3e+02 Score=25.35 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=48.3
Q ss_pred eeHHHHHHHH--HHHH-HHHHh-CCCCCCCEEEEEcC-CcHhHHHHHHHHHHcCCEEE-eccCCCCHHHHHHHHHhcCce
Q 010536 78 LTYQEVYDAA--IRFG-SAMRS-RGVNPGDRCGIYGS-NCPEWIIAMEACNSQAITYV-PLYDTLGANAVEFIINHAEVS 151 (508)
Q Consensus 78 ~Ty~~l~~~~--~~~A-~~L~~-~gv~~gd~Vai~~~-n~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~ 151 (508)
+++.+..... -..| ..|.+ .++++|++|+|... -.+-..++.+|- ..|+..+ ..+.....++...+++..++.
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5777654421 1122 23434 48999999999998 556666666665 4687544 444444445555667788888
Q ss_pred EEEEc
Q 010536 152 IAFVQ 156 (508)
Q Consensus 152 ~vi~~ 156 (508)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 77753
No 105
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=25.43 E-value=2.4e+02 Score=25.07 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhH
Q 010536 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEW 115 (508)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~ 115 (508)
.++++..+..|+...+... |...-++-..+..++.+++.+.+.+|.+ .|+ ...++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~----d~iViACNTas~ 79 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHI----KMLVIACNTATA 79 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCC----SEEEECCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC----CEEEEeCchhhH
Confidence 4567777789998888766 6554455568999999999999999998 776 456666666654
No 106
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.99 E-value=3.8e+02 Score=24.79 Aligned_cols=55 Identities=4% Similarity=-0.016 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhc---CceEEEEcC
Q 010536 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHA---EVSIAFVQE 157 (508)
Q Consensus 99 v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~vi~~~ 157 (508)
+++||.|.+..+....+. -++...|+.++.++. ...+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 467777777766555443 335556777776654 4567777777654 556666543
No 107
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=24.85 E-value=2.2e+02 Score=26.36 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCC-------CCHHHHHHHHHhcCceEEEEc
Q 010536 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-------LGANAVEFIINHAEVSIAFVQ 156 (508)
Q Consensus 99 v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 156 (508)
+++||.|.+..+....+ ..++...|+.++.++.. ...+.+...++..++++++..
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 35666666555544432 23444566665555432 556666666664556665543
No 108
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=24.63 E-value=47 Score=29.71 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCc
Q 010536 88 IRFGSAMRSRGVNPGDRCGIYGSNC 112 (508)
Q Consensus 88 ~~~A~~L~~~gv~~gd~Vai~~~n~ 112 (508)
..+.+.|+++||++||.|.+...-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4566788889999999999997753
No 109
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=23.05 E-value=53 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc
Q 010536 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112 (508)
Q Consensus 76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~ 112 (508)
+.+|-.+| .+.|+++||++||.|.+...-+
T Consensus 20 ~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 20 ELVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CEECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred CCcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 45776655 5668888999999999987643
No 110
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=22.94 E-value=2.5e+02 Score=27.08 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=46.8
Q ss_pred eeHHHHHHHHHHHHH---HHHh---CCCCCCCEEEEEcCCc-HhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCc
Q 010536 78 LTYQEVYDAAIRFGS---AMRS---RGVNPGDRCGIYGSNC-PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV 150 (508)
Q Consensus 78 ~Ty~~l~~~~~~~A~---~L~~---~gv~~gd~Vai~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 150 (508)
+++.+.......... .|.. .++++|++|+|....+ +-..++.+| ...|+.++.+.. +.+++. +++..++
T Consensus 199 l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~~-~~~~lGa 274 (456)
T 3krt_A 199 LSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKAE-ICRAMGA 274 (456)
T ss_dssp SCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHHTC
T ss_pred CCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHHH-HHHhhCC
Confidence 788876533222222 2322 4799999999999844 555555555 567887666653 455554 4577788
Q ss_pred eEEEEc
Q 010536 151 SIAFVQ 156 (508)
Q Consensus 151 ~~vi~~ 156 (508)
..++..
T Consensus 275 ~~vi~~ 280 (456)
T 3krt_A 275 EAIIDR 280 (456)
T ss_dssp CEEEET
T ss_pred cEEEec
Confidence 777654
No 111
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.92 E-value=53 Score=29.52 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCCc
Q 010536 89 RFGSAMRSRGVNPGDRCGIYGSNC 112 (508)
Q Consensus 89 ~~A~~L~~~gv~~gd~Vai~~~n~ 112 (508)
.+.+.|+++||++||.|.+...-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356778889999999999997643
No 112
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=22.90 E-value=1.7e+02 Score=20.18 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=34.7
Q ss_pred eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCE
Q 010536 76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128 (508)
Q Consensus 76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~ 128 (508)
..+.+.++.+. +.+.++.+++.|.+++.....+..+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 46777776543 44456778899999999988888888888888864
No 113
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=22.86 E-value=3.1e+02 Score=24.54 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536 47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW 115 (508)
Q Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~ 115 (508)
.++++..+..|+...+... |...-++-..++.++.+++.+.+..|.+.|+ .+.++.-|+...
T Consensus 36 tv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~IVIaCNTas~ 97 (286)
T 2jfq_A 36 TVAKEIMRQLPNETIYYLG---DIGRCPYGPRPGEQVKQYTVEIARKLMEFDI----KMLVIACNTATA 97 (286)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCccEEEec---cCCCCCcCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCchhH
Confidence 5577777789988877766 5554455567999999999999999987665 466666666654
No 114
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=22.77 E-value=2e+02 Score=26.54 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCCCCCEEEEEcCCcHh------HHHHHHH-HHHcCCEEEeccCCC-------------CHHHHHHHHHhcCceEEEEcC
Q 010536 98 GVNPGDRCGIYGSNCPE------WIIAMEA-CNSQAITYVPLYDTL-------------GANAVEFIINHAEVSIAFVQE 157 (508)
Q Consensus 98 gv~~gd~Vai~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~-------------~~~~l~~~l~~~~~~~vi~~~ 157 (508)
-+++||+|+|+.|.+.- .+-..+. +...|..++.- +.. ..++|...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~-~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEG-SLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEEC-TTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEc-ccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999842 2322233 33478776642 221 233577777778899999876
Q ss_pred C
Q 010536 158 N 158 (508)
Q Consensus 158 ~ 158 (508)
.
T Consensus 88 G 88 (336)
T 3sr3_A 88 G 88 (336)
T ss_dssp C
T ss_pred c
Confidence 4
No 115
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=22.58 E-value=2.1e+02 Score=26.45 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=26.2
Q ss_pred CCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCC-----CCHHHHHHHHHhcCceEEEE
Q 010536 97 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFV 155 (508)
Q Consensus 97 ~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~ 155 (508)
.++++||.|.+..+...... -++...|+.++.++.. ...+.+...++. ++++++.
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 133 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIP 133 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC
T ss_pred cCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEE
Confidence 34566666666555444332 2334556555444321 344555554432 3444443
No 116
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.01 E-value=1.7e+02 Score=27.60 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEcCCcHh------HHHHHHH-HHHcCCEEEeccCC------------CCHHHHHHHHHhcCceEEEEcCC
Q 010536 98 GVNPGDRCGIYGSNCPE------WIIAMEA-CNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 98 gv~~gd~Vai~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
-+++||+|+|+.|.+.- .+-..+. +-..|..++.-..- ...++|...+++-++++|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999999742 2222233 33478776643221 12335666777778899998764
No 117
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=21.98 E-value=3.4e+02 Score=24.35 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536 46 WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116 (508)
Q Consensus 46 ~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~ 116 (508)
..++++..+..|+...+... |...-++-..++.++.+++.+.+..|.+.|+ ...++.-|+...+
T Consensus 37 ltv~~~i~~~~P~~~~iy~~---D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~----d~IVIACNTas~~ 100 (290)
T 2vvt_A 37 LTVLKEALKQLPNERLIYLG---DTARCPYGPRPAEQVVQFTWEMADFLLKKRI----KMLVIACNTATAV 100 (290)
T ss_dssp HHHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHHCCCccEEEec---ccccCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCcchhHH
Confidence 45777778889998877766 5544444457899999999999999988765 4666666666543
No 118
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=21.95 E-value=4.6e+02 Score=25.82 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=46.2
Q ss_pred hCC-CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcC
Q 010536 96 SRG-VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE 157 (508)
Q Consensus 96 ~~g-v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 157 (508)
+.| +++|+.|+. ...+-.-..+.++|..+|..++.+-|...+......++..++.++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 578887755 4555566777788889999888776766666777888999999999875
No 119
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=21.76 E-value=1.7e+02 Score=25.74 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh
Q 010536 48 FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE 114 (508)
Q Consensus 48 ~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~ 114 (508)
++++..+..|+...+... |....++...++.++.+.+.+.+..|.+.|+ .+.++.-|+..
T Consensus 15 v~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTa~ 74 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI----ELLIVACNTAS 74 (255)
T ss_dssp HHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC----SCEEECCHHHH
T ss_pred HHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhh
Confidence 455666778998888877 7666666667999999999999999998776 34555555554
No 120
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=21.63 E-value=3.4e+02 Score=25.24 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCC----CCHHHHHHHHHhcCceEEEEcC
Q 010536 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT----LGANAVEFIINHAEVSIAFVQE 157 (508)
Q Consensus 99 v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 157 (508)
+++||.|.+..+...... ..-++...|+.++.++.. ...+++...++..++++++...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 567777777665433211 222345566655544332 3566777777654556655543
No 121
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=21.57 E-value=4.4e+02 Score=23.75 Aligned_cols=64 Identities=6% Similarity=-0.028 Sum_probs=44.8
Q ss_pred HHhCCC-CCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536 94 MRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 94 L~~~gv-~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
+.+.|. ++|+.|+.. ..+-.-..+.++|..+|..++.+-|...+......++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344554 666655554 4556666777788899998777666555566677888899999998764
No 122
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=21.20 E-value=3.3e+02 Score=25.19 Aligned_cols=55 Identities=4% Similarity=-0.014 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCC-----CCHHHHHHHHHhcCceEEEEc
Q 010536 98 GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT-----LGANAVEFIINHAEVSIAFVQ 156 (508)
Q Consensus 98 gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 156 (508)
++++||.|.+..+....... ++...|+.++.++.. ...+.+...++. ++++++..
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 67889988887776555443 455678776655432 356677766653 55666653
No 123
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.18 E-value=2e+02 Score=26.50 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCcHh------HHHHHHH-HHHcCCEEEeccCC------------CCHHHHHHHHHhcCceEEEEcCC
Q 010536 98 GVNPGDRCGIYGSNCPE------WIIAMEA-CNSQAITYVPLYDT------------LGANAVEFIINHAEVSIAFVQEN 158 (508)
Q Consensus 98 gv~~gd~Vai~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~~ 158 (508)
-+++||+|+|+.|.+.- .+-.... +...|..++.-..- ...++|...+++-++++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999999752 2323333 33477776643211 12345677777788999998764
No 124
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.84 E-value=2.5e+02 Score=25.90 Aligned_cols=76 Identities=13% Similarity=0.044 Sum_probs=46.4
Q ss_pred eeHHHHHHHHHHH---HHHHHhCCCC-CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEE
Q 010536 78 LTYQEVYDAAIRF---GSAMRSRGVN-PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA 153 (508)
Q Consensus 78 ~Ty~~l~~~~~~~---A~~L~~~gv~-~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (508)
+++.+........ -+.|.+.+++ +|++|+|+..-.+-..++.+|-. .|+.++.+... .+++....+..+++.+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCcee
Confidence 6777654221111 1335566888 99999999876666666666654 58766555543 3444444446777766
Q ss_pred EEc
Q 010536 154 FVQ 156 (508)
Q Consensus 154 i~~ 156 (508)
+..
T Consensus 230 i~~ 232 (357)
T 2cf5_A 230 VIG 232 (357)
T ss_dssp EET
T ss_pred ecc
Confidence 543
No 125
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=20.76 E-value=1.9e+02 Score=26.79 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=41.5
Q ss_pred CCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCC
Q 010536 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK 159 (508)
Q Consensus 102 gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 159 (508)
.+.|+.. ..+-.-..+.++|.++|..++.+-|...+......++..++++++++...
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 3443333 44556677778899999987777666666677788899999999998653
No 126
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=20.41 E-value=3.7e+02 Score=24.69 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccC----CCCHHHHHHHHHhcCceEEEEc
Q 010536 99 VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD----TLGANAVEFIINHAEVSIAFVQ 156 (508)
Q Consensus 99 v~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~----~~~~~~l~~~l~~~~~~~vi~~ 156 (508)
+++||.|.+..+....+. ..-++...|+.++.++. ....+++...++..++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 457787777766655432 11245566766555442 2556777777765455666553
No 127
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=20.35 E-value=2e+02 Score=26.52 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=46.1
Q ss_pred eeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCC-EEEeccCCCCHHHHHHHHHhcCceEE
Q 010536 78 LTYQEVYDAAIRFG---SAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-TYVPLYDTLGANAVEFIINHAEVSIA 153 (508)
Q Consensus 78 ~Ty~~l~~~~~~~A---~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~v 153 (508)
+++.+.......++ +.+...++++|++|+|+..-.+-..++.+|- ..|+ .++.++. +.++ ..+++..+++.+
T Consensus 140 ~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~v 215 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGATDI 215 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCCEE
T ss_pred CCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCceE
Confidence 66666643222211 2355678999999999987556666666654 5787 5655554 2333 345667788776
Q ss_pred EE
Q 010536 154 FV 155 (508)
Q Consensus 154 i~ 155 (508)
+.
T Consensus 216 i~ 217 (352)
T 3fpc_A 216 IN 217 (352)
T ss_dssp EC
T ss_pred Ec
Confidence 64
Done!