BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010537
(508 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK--------TCDVCKQD 305
+CRIC + ++ C C G L H+EC KW K N TC++CK+
Sbjct: 552 LCRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
Query: 306 VQNLPVTLLKIH 317
+Q L + IH
Sbjct: 612 LQ-LNLEDFDIH 622
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGN--------KTCDVCKQDV 306
CRIC + G + C C G L H+EC KW +K KTC++CKQ +
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQGL 700
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK--------TCDVCKQDV 306
CRIC + ++ C C G L H+EC KW K N TC++CK+ +
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 613
Query: 307 QNLPVTLLKIH 317
Q L + IH
Sbjct: 614 Q-LNLEDFDIH 623
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--------GNKTCDVCKQDV 306
CRIC + G + C C G L H+EC KW +K KTC++CKQ +
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQGL 718
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK--------TCDVCKQDV 306
CRIC + ++ C C G L H++C KW K N TC++CK+ +
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 307 QNLPVTLLKIH 317
+ L + IH
Sbjct: 612 E-LNLEDFDIH 621
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK--------TCDVCKQDV 306
CRIC + ++ C C G L H++C KW K N TC++CK+ +
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 307 QNLPVTLLKIH 317
+ L + IH
Sbjct: 612 E-LNLEDFDIH 621
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 246 EDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302
ED+P VC IC ELG + F+ C C GEL H+ C W TI N C +C
Sbjct: 4 EDVP----VCWICNEELGN--ERFRA-CGCTGELENVHRSCLSTWLTISRNTACQIC 53
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 25/116 (21%)
Query: 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV---- 306
++ +CR+C E +F C C G + H+EC V+W C++CK
Sbjct: 4 DDEICRVCRCEGAPDSPLFH-PCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTK 62
Query: 307 ---QNLPVTLLKIHNPQTVI-RRPQTIVQQREVARYRVWQDMPVLIMVSMLAYFCF 358
+++P T+ P T++ R+ + ++QR + RV +L +FC+
Sbjct: 63 VYSESMPRTI-----PFTILCRKLASTLKQRVIFFTRV-----------LLTFFCW 102
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 237 TDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-- 294
TD AT +D P A CRIC E E +F C C+G + H+ C ++W K
Sbjct: 24 TDTAT--FNDDAPSG-ATCRICRGEATEDNPLFH-PCKCRGSIKYMHESCLLEWVASKNI 79
Query: 295 ------GNKTCDVCKQDVQ 307
+ CD+C +Q
Sbjct: 80 DISKPGADVKCDICHYPIQ 98
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 244 AGEDIPE--EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV 301
A +D+ E E +C IC E+G G C+C GEL + H +C W T+ N C +
Sbjct: 2 ASKDVEEGVEGPICWICREEVGNEGIH---PCACTGELDVVHPQCLSTWLTVSRNTACQM 58
Query: 302 CK 303
C+
Sbjct: 59 CR 60
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310
EE +CR+C E G C C G + H+EC V+W + C++CK P
Sbjct: 5 EEDICRVCRSE-GTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 311 V 311
+
Sbjct: 64 I 64
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 227 ERISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKEC 286
ER+S+N + ++G P +CRIC + E G++ C C G + H+ C
Sbjct: 126 ERLSLN-------SCTDSGVRTP----LCRICF-QGPEQGELLS-PCRCSGSVRCTHEPC 172
Query: 287 AVKWFTIKGNKTCDVCKQDVQNLPVTLLKIHNPQTVIRRPQTIVQQREVA 336
+KW + +G+ +C++C Q V + NP T++++ ++A
Sbjct: 173 LIKWISERGSWSCELCYYKYQ---VIAISTKNPLQWQAISLTVIEKVQIA 219
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310
EE +CR+C E G C C G + H+EC V+W + C++CK P
Sbjct: 5 EEDICRVCRSE-GTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 311 V 311
+
Sbjct: 64 I 64
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310
EE +CR+C E G C C G + H+EC V+W + C++CK P
Sbjct: 5 EEDICRVCRSE-GTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 311 V 311
+
Sbjct: 64 I 64
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVTL 313
+C+IC + E G++ C C G + H+ C +KW + +G+ TC++C VT
Sbjct: 165 ICKICF-QGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELC---CYRYHVTA 219
Query: 314 LKIHNP 319
+K+ P
Sbjct: 220 IKMKQP 225
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 247 DIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD- 305
D P + CRIC G G+ C C G L HK C KW + C++C +
Sbjct: 56 DTPSDGPFCRIC--HEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 306 -VQNLPVTL---LKIHNPQTVIR 324
V+ P L LK P+T R
Sbjct: 114 AVEKRPRPLTEWLKDPGPRTEKR 136
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311
+ +C+IC + E G++ C C G + H+ C +KW + +G+ TC++C V
Sbjct: 165 QPICKICF-QGAEQGELLN-PCRCDGSVRYTHQLCLLKWISERGSWTCELC---CYRYHV 219
Query: 312 TLLKIHNP 319
T +K+ P
Sbjct: 220 TAIKMKQP 227
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 227 ERISVNDDPAT-----------DIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSC 275
ER D P T + AG + +C+IC + E G++ C C
Sbjct: 131 ERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICF-QGAEQGELLN-PCRC 188
Query: 276 KGELALAHKECAVKWFTIKGNKTCDVC 302
G + H+ C +KW + +G+ TC++C
Sbjct: 189 DGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305
P + +CRIC E E + C C G L H+ C +W + C++CK D
Sbjct: 74 PSTQDICRICHCEGDEESPLIT-PCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYD 129
>sp|Q91V17|ZNRF1_MOUSE E3 ubiquitin-protein ligase ZNRF1 OS=Mus musculus GN=Znrf1 PE=1
SV=1
Length = 227
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 19/72 (26%)
Query: 228 RISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECA 287
R+S NDD + T++AGE C ICL EL +G + +L C C + HK C
Sbjct: 169 RLSYNDD----VLTKDAGE--------CVICLEELLQGDTIARLPCLC-----IYHKSCI 211
Query: 288 VKWFTIKGNKTC 299
WF + N++C
Sbjct: 212 DSWFEV--NRSC 221
>sp|F1MM41|ZNRF1_BOVIN E3 ubiquitin-protein ligase ZNRF1 OS=Bos taurus GN=ZNRF1 PE=3 SV=2
Length = 227
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 19/72 (26%)
Query: 228 RISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECA 287
R+S NDD + T++AGE C ICL EL +G + +L C C + HK C
Sbjct: 169 RLSYNDD----VLTKDAGE--------CVICLEELLQGDTIARLPCLC-----IYHKSCI 211
Query: 288 VKWFTIKGNKTC 299
WF + N++C
Sbjct: 212 DSWFEV--NRSC 221
>sp|Q8ND25|ZNRF1_HUMAN E3 ubiquitin-protein ligase ZNRF1 OS=Homo sapiens GN=ZNRF1 PE=1
SV=2
Length = 227
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 19/72 (26%)
Query: 228 RISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECA 287
R+S NDD + T++AGE C ICL EL +G + +L C C + HK C
Sbjct: 169 RLSYNDD----VLTKDAGE--------CVICLEELLQGDTIARLPCLC-----IYHKSCI 211
Query: 288 VKWFTIKGNKTC 299
WF + N++C
Sbjct: 212 DSWFEV--NRSC 221
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305
P + +CRIC E E + C C G L H+ C +W + C++CK D
Sbjct: 74 PSTQDICRICHCEGDEESPLIT-PCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYD 129
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D++
Sbjct: 942 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 987
>sp|F7EP40|ZNRF1_XENTR E3 ubiquitin-protein ligase znrf1 OS=Xenopus tropicalis GN=znrf1
PE=3 SV=1
Length = 195
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 19/72 (26%)
Query: 228 RISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECA 287
R+S NDD + T +AGE C ICL EL +G + +L C C + HK C
Sbjct: 137 RLSYNDD----VLTRDAGE--------CVICLEELSQGDTIARLPCLC-----IYHKSCI 179
Query: 288 VKWFTIKGNKTC 299
WF + N+ C
Sbjct: 180 DSWFEV--NRCC 189
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D++
Sbjct: 934 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 979
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D++
Sbjct: 937 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDIE 982
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
+E VC ICL E +G + L CS H +C W T K KTC VCKQ V
Sbjct: 235 DEYDVCAICLEEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVT 312
CRIC + E G++ C C G + H+ C ++W + +G+ +C++C Q L ++
Sbjct: 110 CRICF-QGPEQGELLS-PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 247 DIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD- 305
D P + CRIC G G+ C C G L HK C KW + C++C +
Sbjct: 56 DTPSDCPFCRIC--HEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 306 -VQNLPVTL---LKIHNPQTVIR 324
V+ P L LK P+T R
Sbjct: 114 AVEKRPRPLTEWLKDPGPRTEKR 136
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
+E VC ICL E +G + L CS H +C W T K KTC VCKQ V
Sbjct: 235 DEYDVCAICLEEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 235 PATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK 294
P ++ GE+ +E C ICL L +G D+ +L C + L H+ C +W +
Sbjct: 276 PQDSKGKKDEGEESDTDEK-CTICLSMLEDGEDVRRLPC-----MHLFHQLCVDQWLAM- 328
Query: 295 GNKTCDVCKQDVQ 307
+K C +C+ D++
Sbjct: 329 -SKKCPICRVDIE 340
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 235 PATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK 294
P ++ GE+ +E C ICL L +G D+ +L C + L H+ C +W +
Sbjct: 275 PQDGKGKKDEGEESDTDEK-CTICLSMLEDGEDVRRLPC-----MHLFHQLCVDQWLAM- 327
Query: 295 GNKTCDVCKQDVQ 307
+K C +C+ D++
Sbjct: 328 -SKKCPICRVDIE 339
>sp|Q66KG7|ZNRF1_XENLA E3 ubiquitin-protein ligase znrf1 OS=Xenopus laevis GN=znrf1 PE=2
SV=1
Length = 195
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 19/72 (26%)
Query: 228 RISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECA 287
R+S NDD + T +AGE C ICL EL +G + +L C C + HK C
Sbjct: 137 RLSYNDD----VLTRDAGE--------CVICLEELSQGDTIARLPCLC-----IYHKSCI 179
Query: 288 VKWFTIKGNKTC 299
WF + N+ C
Sbjct: 180 DSWFEV--NRCC 189
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVT 312
CRIC + E G++ C C G + H+ C ++W + +G+ +C++C Q L ++
Sbjct: 110 CRICF-QGPEQGELLS-PCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
>sp|Q6P4U6|ZNRF1_DANRE E3 ubiquitin-protein ligase znrf1 OS=Danio rerio GN=znrf1 PE=2 SV=1
Length = 215
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 19/72 (26%)
Query: 228 RISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECA 287
R+S NDD + + +AGE C ICL EL +G + +L C C + HK C
Sbjct: 157 RLSYNDD----VLSRDAGE--------CVICLEELQQGDTIARLPCLC-----IYHKSCI 199
Query: 288 VKWFTIKGNKTC 299
WF I N++C
Sbjct: 200 DSWFEI--NRSC 209
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVTL 313
+CRIC + E G++ C C G + H+ C +KW + +G +C++C V
Sbjct: 162 LCRICF-QGPEQGELLS-PCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYH---VIA 216
Query: 314 LKIHNPQTVIRRPQTIVQQREVA 336
+ NP T++++ +VA
Sbjct: 217 ISTKNPLQWQAISLTVIEKVQVA 239
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
+E VC ICL E +G + L CS H +C W T K KTC VCKQ V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 40.8 bits (94), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
+E VC ICL E +G + L CS H +C W T K KTC VCKQ V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D+
Sbjct: 871 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDI 915
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
+E VC ICL E +G + L CS H +C W T K KTC VCKQ V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
+E VC ICL E +G + L CS H +C W T K KTC VCKQ V
Sbjct: 235 DEYDVCAICLDEYEDGDKLRILPCS-----HAYHCKCVDPWLT-KTKKTCPVCKQKV 285
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305
P + +CRIC E G+ C C G L H+ C +W + C++CK +
Sbjct: 70 PSNQDICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 125
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D+
Sbjct: 907 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDI 951
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
C ICL+E E + +L +C + H+EC +W ++ NKTC VC++++
Sbjct: 114 CAICLLEFEEEHILLRLLTTC---YHVFHQECIDQW--LESNKTCPVCRRNL 160
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D+
Sbjct: 902 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDI 946
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306
C ICL L EG D+ +L C + L H+ C +W NK C +C+ D+
Sbjct: 915 CTICLSILEEGEDVRRLPC-----MHLFHQVCVDQWLIT--NKKCPICRVDI 959
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 37/164 (22%)
Query: 254 VCRICLVELGEGGDMFKL--ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311
+CRIC EGG+ +L C C G L HK C KW + C++C
Sbjct: 63 ICRIC----HEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELC--------- 109
Query: 312 TLLKIHNPQTVIRRPQTIVQQREVARYR-----VWQDMPVLIMVSMLAYFCFLEQLLVSD 366
H V RRP+ + + + R ++ DM + ++ LA +
Sbjct: 110 -----HTEFAVERRPRPVTEWLKDPGPRNEKRTLFCDMVCFLFITPLA-------AISGW 157
Query: 367 LGARALAISLPFSCVL---GLLSSMIASTMVSRSYIWAYASFQF 407
L R L F+ L GL++ IA + + +W SF++
Sbjct: 158 LCLRGAQDHLQFNSRLEAVGLIALTIA--LFTIYVLWTLVSFRY 199
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309
+E VC ICL E +G + L C+ H C W T + KTC +CKQ V
Sbjct: 225 DEYDVCAICLDEYEDGDKLRVLPCA-----HAYHSRCVDPWLT-QTRKTCPICKQPVHRG 278
Query: 310 P 310
P
Sbjct: 279 P 279
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 37/164 (22%)
Query: 254 VCRICLVELGEGGDMFKL--ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311
+CRIC EGG+ +L C C G L HK C KW + C++C
Sbjct: 63 ICRIC----HEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELC--------- 109
Query: 312 TLLKIHNPQTVIRRPQTIVQQREVARYR-----VWQDMPVLIMVSMLAYFCFLEQLLVSD 366
H V RRP+ + + + R ++ DM + ++ LA +
Sbjct: 110 -----HTEFAVERRPRPVTEWLKDPGPRHEKRTLFCDMVCFLFITPLA-------AISGW 157
Query: 367 LGARALAISLPFSCVL---GLLSSMIASTMVSRSYIWAYASFQF 407
L R L F+ L GL++ IA + + +W SF++
Sbjct: 158 LCLRGAQDHLQFNSRLEAVGLIALTIA--LFTIYVLWTLVSFRY 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,120,673
Number of Sequences: 539616
Number of extensions: 6936437
Number of successful extensions: 56528
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 38526
Number of HSP's gapped (non-prelim): 11044
length of query: 508
length of database: 191,569,459
effective HSP length: 122
effective length of query: 386
effective length of database: 125,736,307
effective search space: 48534214502
effective search space used: 48534214502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)