Query 010537
Match_columns 508
No_of_seqs 277 out of 1185
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 01:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1609 Protein involved in mR 99.7 3.1E-18 6.7E-23 169.2 3.1 206 243-450 69-282 (323)
2 smart00744 RINGv The RING-vari 99.5 1.7E-14 3.7E-19 110.8 3.5 49 254-303 1-49 (49)
3 PF12906 RINGv: RING-variant d 99.3 4.9E-13 1.1E-17 101.9 2.9 47 255-302 1-47 (47)
4 PHA02862 5L protein; Provision 99.3 8.1E-13 1.8E-17 121.9 3.6 52 252-307 2-53 (156)
5 PHA02825 LAP/PHD finger-like p 99.3 3.3E-12 7.2E-17 119.4 5.7 57 248-308 4-60 (162)
6 KOG4628 Predicted E3 ubiquitin 99.0 1.1E-10 2.3E-15 121.1 3.6 50 253-308 230-279 (348)
7 KOG3053 Uncharacterized conser 99.0 9.2E-10 2E-14 109.8 9.1 61 249-309 17-84 (293)
8 PF13639 zf-RING_2: Ring finge 99.0 4E-10 8.6E-15 83.4 3.1 44 253-303 1-44 (44)
9 COG5183 SSM4 Protein involved 98.9 1.3E-09 2.8E-14 121.2 6.4 58 251-309 11-68 (1175)
10 PF12678 zf-rbx1: RING-H2 zinc 98.6 6.7E-08 1.4E-12 79.7 4.3 44 253-303 20-73 (73)
11 COG5540 RING-finger-containing 98.5 5.3E-08 1.1E-12 99.4 3.8 51 250-306 321-371 (374)
12 PHA02929 N1R/p28-like protein; 98.3 2.9E-07 6.3E-12 91.7 3.5 52 251-309 173-229 (238)
13 COG5243 HRD1 HRD ubiquitin lig 98.2 6.6E-07 1.4E-11 93.6 2.9 53 248-307 283-345 (491)
14 PF12861 zf-Apc11: Anaphase-pr 98.2 8.1E-07 1.8E-11 76.1 2.7 51 252-307 21-82 (85)
15 cd00162 RING RING-finger (Real 98.0 4.2E-06 9.2E-11 59.3 3.2 45 254-306 1-45 (45)
16 PF13920 zf-C3HC4_3: Zinc fing 97.9 1.1E-05 2.4E-10 61.3 3.6 47 252-308 2-49 (50)
17 PLN03208 E3 ubiquitin-protein 97.9 1.1E-05 2.3E-10 78.4 4.2 51 250-308 16-80 (193)
18 KOG1493 Anaphase-promoting com 97.9 2.7E-06 5.8E-11 71.8 -0.1 49 254-307 22-81 (84)
19 KOG0802 E3 ubiquitin ligase [P 97.9 6.1E-06 1.3E-10 90.3 2.3 50 250-306 289-340 (543)
20 smart00184 RING Ring finger. E 97.7 2.4E-05 5.1E-10 53.5 2.8 39 255-302 1-39 (39)
21 COG5219 Uncharacterized conser 97.6 1.4E-05 3E-10 91.2 0.6 51 252-307 1469-1523(1525)
22 PHA02926 zinc finger-like prot 97.6 3.1E-05 6.7E-10 76.8 2.9 56 249-309 167-232 (242)
23 COG5194 APC11 Component of SCF 97.6 3.8E-05 8.3E-10 65.4 2.3 48 253-307 21-81 (88)
24 PF00097 zf-C3HC4: Zinc finger 97.6 5.2E-05 1.1E-09 54.9 2.7 41 255-302 1-41 (41)
25 PF13923 zf-C3HC4_2: Zinc fing 97.5 9.6E-05 2.1E-09 53.6 3.1 39 255-302 1-39 (39)
26 PF11793 FANCL_C: FANCL C-term 97.5 4.1E-05 8.9E-10 62.9 1.2 53 252-307 2-66 (70)
27 PF09679 TraQ: Type-F conjugat 97.2 0.0015 3.2E-08 56.4 7.9 46 399-450 16-61 (93)
28 KOG0828 Predicted E3 ubiquitin 97.2 0.00019 4.2E-09 77.7 2.2 51 250-306 569-633 (636)
29 KOG0823 Predicted E3 ubiquitin 97.2 0.0005 1.1E-08 68.5 4.9 53 248-308 43-96 (230)
30 smart00504 Ubox Modified RING 97.1 0.00051 1.1E-08 53.5 3.9 45 253-307 2-46 (63)
31 KOG1734 Predicted RING-contain 97.1 0.00019 4.1E-09 73.1 1.2 52 251-307 223-281 (328)
32 PF14634 zf-RING_5: zinc-RING 97.0 0.00042 9.1E-09 51.7 2.5 43 255-304 2-44 (44)
33 KOG0827 Predicted E3 ubiquitin 96.7 0.00066 1.4E-08 72.0 1.9 46 252-303 4-52 (465)
34 KOG0317 Predicted E3 ubiquitin 96.7 0.0018 3.8E-08 66.5 4.2 54 246-309 233-286 (293)
35 TIGR00599 rad18 DNA repair pro 96.6 0.0011 2.3E-08 70.9 2.4 49 250-308 24-72 (397)
36 KOG0825 PHD Zn-finger protein 96.6 0.0014 3.1E-08 74.3 3.0 54 251-311 122-175 (1134)
37 KOG0804 Cytoplasmic Zn-finger 96.5 0.0012 2.6E-08 71.1 1.7 48 251-307 174-222 (493)
38 KOG0320 Predicted E3 ubiquitin 96.3 0.0028 6E-08 61.3 2.9 54 245-306 124-177 (187)
39 KOG2930 SCF ubiquitin ligase, 96.2 0.0025 5.5E-08 56.9 1.9 28 273-307 81-108 (114)
40 PF15227 zf-C3HC4_4: zinc fing 96.0 0.0061 1.3E-07 45.5 2.8 40 255-302 1-42 (42)
41 KOG1645 RING-finger-containing 95.9 0.0055 1.2E-07 65.5 3.0 52 251-307 3-56 (463)
42 PF04564 U-box: U-box domain; 95.5 0.014 3.1E-07 47.9 3.5 48 251-307 3-50 (73)
43 KOG4265 Predicted E3 ubiquitin 95.2 0.019 4.1E-07 60.5 4.2 48 250-307 288-336 (349)
44 KOG4445 Uncharacterized conser 94.7 0.011 2.5E-07 61.2 1.0 50 253-307 116-186 (368)
45 PF13445 zf-RING_UBOX: RING-ty 94.7 0.031 6.7E-07 42.3 3.0 40 255-300 1-43 (43)
46 KOG2177 Predicted E3 ubiquitin 94.4 0.015 3.3E-07 54.4 0.9 45 250-304 11-55 (386)
47 PF05883 Baculo_RING: Baculovi 94.1 0.026 5.6E-07 52.4 1.7 41 252-292 26-67 (134)
48 KOG1941 Acetylcholine receptor 93.7 0.021 4.6E-07 61.0 0.4 52 250-306 363-415 (518)
49 COG5432 RAD18 RING-finger-cont 93.0 0.046 9.9E-07 56.7 1.4 48 252-309 25-72 (391)
50 PF14570 zf-RING_4: RING/Ubox 92.7 0.074 1.6E-06 41.5 2.0 46 255-307 1-48 (48)
51 TIGR00570 cdk7 CDK-activating 92.7 0.097 2.1E-06 54.6 3.4 50 252-307 3-54 (309)
52 KOG1039 Predicted E3 ubiquitin 92.2 0.08 1.7E-06 56.0 2.1 55 250-309 159-223 (344)
53 KOG1428 Inhibitor of type V ad 91.4 0.13 2.8E-06 62.3 2.9 54 250-308 3484-3545(3738)
54 KOG0287 Postreplication repair 91.0 0.087 1.9E-06 55.7 0.9 47 252-308 23-69 (442)
55 KOG3676 Ca2+-permeable cation 90.8 3 6.6E-05 48.4 12.7 89 370-458 505-663 (782)
56 KOG0801 Predicted E3 ubiquitin 90.7 0.098 2.1E-06 50.4 0.8 29 251-284 176-204 (205)
57 PF10367 Vps39_2: Vacuolar sor 90.4 0.14 3.1E-06 43.4 1.6 32 251-288 77-108 (109)
58 COG5574 PEX10 RING-finger-cont 90.4 0.25 5.4E-06 50.6 3.5 53 246-307 209-262 (271)
59 PF07800 DUF1644: Protein of u 90.2 0.33 7.1E-06 46.5 3.9 55 251-308 1-92 (162)
60 PF07895 DUF1673: Protein of u 89.2 4.4 9.6E-05 39.9 11.0 35 419-459 151-185 (205)
61 KOG1785 Tyrosine kinase negati 89.1 0.26 5.6E-06 53.2 2.5 49 253-309 370-418 (563)
62 KOG2164 Predicted E3 ubiquitin 88.6 0.32 6.9E-06 53.7 2.9 49 252-308 186-237 (513)
63 COG5236 Uncharacterized conser 88.3 0.7 1.5E-05 49.3 5.0 58 246-311 55-112 (493)
64 PF08746 zf-RING-like: RING-li 88.2 0.21 4.7E-06 37.7 0.9 23 280-302 21-43 (43)
65 KOG0824 Predicted E3 ubiquitin 85.7 0.38 8.3E-06 50.2 1.4 47 252-307 7-53 (324)
66 KOG1952 Transcription factor N 84.0 0.52 1.1E-05 54.8 1.6 60 251-314 190-254 (950)
67 KOG1002 Nucleotide excision re 81.5 0.58 1.3E-05 52.1 0.8 51 249-307 533-586 (791)
68 KOG3039 Uncharacterized conser 81.4 3.4 7.4E-05 42.5 6.0 51 251-308 220-271 (303)
69 PF10272 Tmpp129: Putative tra 80.7 1.4 3.1E-05 47.0 3.3 36 272-310 308-354 (358)
70 KOG3970 Predicted E3 ubiquitin 80.4 1.4 3E-05 44.7 2.9 51 251-307 49-105 (299)
71 PF11789 zf-Nse: Zinc-finger o 79.9 1.2 2.7E-05 35.5 1.9 43 252-301 11-53 (57)
72 PF11674 DUF3270: Protein of u 78.7 8.8 0.00019 33.8 6.9 49 396-444 37-85 (90)
73 COG5152 Uncharacterized conser 78.6 1 2.3E-05 44.9 1.4 46 252-307 196-241 (259)
74 PF14012 DUF4229: Protein of u 78.2 8.9 0.00019 31.8 6.5 61 399-462 1-63 (69)
75 KOG0802 E3 ubiquitin ligase [P 77.8 1.4 3E-05 48.9 2.2 54 241-308 468-521 (543)
76 KOG1973 Chromatin remodeling p 77.6 1.5 3.2E-05 44.9 2.2 38 270-307 232-270 (274)
77 KOG0311 Predicted E3 ubiquitin 77.4 0.4 8.7E-06 51.0 -2.0 49 251-307 42-90 (381)
78 COG2246 Predicted membrane pro 76.9 39 0.00084 31.4 11.1 50 407-456 89-138 (139)
79 KOG4172 Predicted E3 ubiquitin 76.1 0.86 1.9E-05 37.0 0.0 49 252-309 7-56 (62)
80 PF10947 DUF2628: Protein of u 74.3 27 0.00059 30.4 9.0 52 399-451 55-106 (108)
81 COG5175 MOT2 Transcriptional r 74.3 2.2 4.8E-05 45.5 2.5 53 249-308 11-65 (480)
82 PRK13727 conjugal transfer pil 74.2 10 0.00022 32.5 5.9 40 410-449 21-60 (80)
83 PF14446 Prok-RING_1: Prokaryo 73.2 3.2 6.9E-05 33.4 2.6 45 251-306 4-51 (54)
84 KOG0827 Predicted E3 ubiquitin 72.9 0.38 8.2E-06 51.8 -3.5 48 253-307 197-245 (465)
85 TIGR02741 TraQ type-F conjugat 72.9 14 0.00031 31.6 6.4 45 399-449 16-60 (80)
86 KOG3059 N-acetylglucosaminyltr 72.0 40 0.00087 35.4 10.8 46 354-399 151-197 (292)
87 PLN02189 cellulose synthase 71.9 2.9 6.2E-05 50.1 2.9 52 252-308 34-88 (1040)
88 PF06570 DUF1129: Protein of u 70.5 37 0.00081 33.0 9.8 36 376-411 117-158 (206)
89 COG0670 Integral membrane prot 69.5 81 0.0017 31.9 12.2 78 367-444 82-163 (233)
90 KOG0978 E3 ubiquitin ligase in 67.9 1.8 3.9E-05 49.8 0.2 46 253-307 644-689 (698)
91 COG3256 NorB Nitric oxide redu 67.7 53 0.0012 38.0 11.4 111 345-455 307-452 (717)
92 COG2995 PqiA Uncharacterized p 67.0 5.2 0.00011 43.4 3.4 82 376-457 273-354 (418)
93 PF01146 Caveolin: Caveolin; 66.7 22 0.00048 33.8 7.1 27 371-402 75-101 (148)
94 KOG0309 Conserved WD40 repeat- 66.4 6.8 0.00015 45.7 4.3 41 253-301 1029-1069(1081)
95 KOG3268 Predicted E3 ubiquitin 66.0 4.3 9.4E-05 40.0 2.3 52 249-306 162-227 (234)
96 KOG1571 Predicted E3 ubiquitin 64.0 4.9 0.00011 43.0 2.5 46 250-308 303-348 (355)
97 KOG2114 Vacuolar assembly/sort 62.4 3.6 7.9E-05 48.2 1.2 45 253-309 841-885 (933)
98 PRK11644 sensory histidine kin 61.9 46 0.00099 36.4 9.5 86 346-443 10-97 (495)
99 KOG1940 Zn-finger protein [Gen 59.4 4.3 9.4E-05 42.1 1.1 45 253-304 159-204 (276)
100 PF01440 Gemini_AL2: Geminivir 59.0 2.1 4.6E-05 40.1 -1.1 34 268-304 32-65 (134)
101 PF14965 BRI3BP: Negative regu 59.0 56 0.0012 32.2 8.4 71 344-443 76-146 (177)
102 PRK01766 multidrug efflux prot 58.5 96 0.0021 32.7 10.9 47 408-455 400-446 (456)
103 PLN02436 cellulose synthase A 58.3 7.5 0.00016 46.9 2.9 51 252-307 36-89 (1094)
104 PF02592 DUF165: Uncharacteriz 57.9 86 0.0019 28.9 9.3 30 425-454 66-95 (145)
105 PLN02638 cellulose synthase A 57.3 9 0.0002 46.2 3.3 51 251-307 16-70 (1079)
106 KOG2568 Predicted membrane pro 57.2 1.2E+02 0.0026 34.4 11.6 34 425-458 387-420 (518)
107 PRK07668 hypothetical protein; 56.3 91 0.002 32.2 9.9 106 340-446 73-195 (254)
108 PLN03223 Polycystin cation cha 56.2 95 0.0021 39.1 11.3 19 415-433 1304-1322(1634)
109 PRK10726 hypothetical protein; 56.0 93 0.002 28.3 8.6 39 397-435 52-90 (105)
110 PRK11618 inner membrane ABC tr 55.7 1.7E+02 0.0037 30.2 11.9 20 422-441 84-103 (317)
111 PF04641 Rtf2: Rtf2 RING-finge 55.3 15 0.00033 37.1 4.2 53 250-310 111-164 (260)
112 KOG4443 Putative transcription 54.7 6.5 0.00014 45.1 1.5 33 269-303 34-75 (694)
113 PF02932 Neur_chan_memb: Neuro 54.4 66 0.0014 28.3 7.7 11 346-356 7-17 (237)
114 KOG4159 Predicted E3 ubiquitin 54.2 5 0.00011 43.6 0.5 51 250-310 82-132 (398)
115 PLN02195 cellulose synthase A 53.7 13 0.00028 44.6 3.8 51 251-307 5-59 (977)
116 KOG3899 Uncharacterized conser 53.6 7 0.00015 41.2 1.5 35 273-310 323-368 (381)
117 PRK09757 PTS system N-acetylga 53.3 50 0.0011 34.1 7.5 37 393-441 201-237 (267)
118 PF07907 YibE_F: YibE/F-like p 53.2 1.6E+02 0.0034 30.0 11.0 101 349-453 3-103 (244)
119 PF04138 GtrA: GtrA-like prote 53.1 1.3E+02 0.0027 25.8 9.0 42 405-450 73-114 (117)
120 COG4129 Predicted membrane pro 52.7 55 0.0012 34.8 7.9 68 374-447 58-147 (332)
121 PF14569 zf-UDP: Zinc-binding 52.6 14 0.00031 31.9 2.9 53 251-309 8-64 (80)
122 KOG1100 Predicted E3 ubiquitin 52.3 7.4 0.00016 38.6 1.4 39 254-306 160-199 (207)
123 COG0765 HisM ABC-type amino ac 52.2 56 0.0012 32.9 7.5 72 373-452 30-112 (222)
124 COG0842 ABC-type multidrug tra 52.1 1.8E+02 0.0039 27.4 10.6 47 365-419 115-161 (286)
125 KOG2879 Predicted E3 ubiquitin 51.1 17 0.00037 38.0 3.7 50 251-308 238-288 (298)
126 PF10131 PTPS_related: 6-pyruv 50.7 1.6E+02 0.0035 33.7 11.7 14 433-446 152-165 (616)
127 PLN02400 cellulose synthase 50.5 11 0.00023 45.7 2.5 52 251-308 35-90 (1085)
128 KOG1813 Predicted E3 ubiquitin 50.3 8 0.00017 40.6 1.3 47 252-308 241-287 (313)
129 COG3671 Predicted membrane pro 49.7 1.2E+02 0.0026 28.4 8.5 15 430-444 81-95 (125)
130 KOG3533 Inositol 1,4,5-trispho 49.5 1.1E+02 0.0024 38.7 10.3 13 282-294 2143-2155(2706)
131 PF12805 FUSC-like: FUSC-like 49.2 1.9E+02 0.0042 29.2 11.0 13 402-414 47-59 (284)
132 KOG4692 Predicted E3 ubiquitin 49.1 11 0.00024 40.6 2.2 49 250-308 420-468 (489)
133 PF12084 DUF3561: Protein of u 48.9 72 0.0016 29.1 6.8 52 373-431 38-89 (107)
134 TIGR00918 2A060602 The Eukaryo 48.8 1.3E+02 0.0028 37.1 11.1 9 284-292 860-868 (1145)
135 PF06305 DUF1049: Protein of u 48.3 40 0.00088 26.7 4.8 25 431-455 24-48 (68)
136 PRK11098 microcin B17 transpor 48.2 48 0.001 36.3 6.8 99 340-450 12-118 (409)
137 KOG1814 Predicted E3 ubiquitin 47.6 12 0.00026 41.0 2.1 50 252-306 184-239 (445)
138 PRK08633 2-acyl-glycerophospho 47.3 1.1E+02 0.0024 35.8 10.1 15 427-441 324-338 (1146)
139 PRK05415 hypothetical protein; 47.2 90 0.002 33.5 8.5 49 418-466 90-138 (341)
140 PF08006 DUF1700: Protein of u 46.9 2.6E+02 0.0056 26.5 11.3 9 446-454 167-175 (181)
141 KOG2034 Vacuolar sorting prote 46.7 9.2 0.0002 45.2 1.2 34 252-291 817-850 (911)
142 PF03739 YjgP_YjgQ: Predicted 46.6 68 0.0015 32.7 7.3 42 398-439 302-343 (354)
143 COG4485 Predicted membrane pro 46.3 5.8E+02 0.013 30.5 15.0 15 390-404 346-360 (858)
144 PLN02915 cellulose synthase A 46.1 19 0.00042 43.4 3.7 52 251-308 14-69 (1044)
145 KOG2660 Locus-specific chromos 46.0 6.9 0.00015 41.5 0.0 50 252-310 15-64 (331)
146 PF01528 Herpes_glycop: Herpes 44.8 1.4E+02 0.003 32.5 9.5 41 422-462 300-340 (374)
147 PF15345 TMEM51: Transmembrane 44.6 16 0.00036 37.1 2.4 28 434-461 64-91 (233)
148 PF14447 Prok-RING_4: Prokaryo 44.6 12 0.00026 30.3 1.2 44 252-307 7-50 (55)
149 TIGR00927 2A1904 K+-dependent 44.5 1E+02 0.0022 37.6 9.0 22 344-365 936-957 (1096)
150 PF02487 CLN3: CLN3 protein; 44.5 1.7E+02 0.0037 32.0 10.2 68 381-452 291-358 (402)
151 COG5222 Uncharacterized conser 43.7 14 0.0003 39.2 1.8 106 189-305 211-319 (427)
152 PRK11652 emrD multidrug resist 43.1 3.7E+02 0.0081 27.2 12.6 15 429-443 303-317 (394)
153 PF01306 LacY_symp: LacY proto 42.2 1E+02 0.0023 33.6 8.2 88 352-439 23-118 (412)
154 TIGR00697 conserved hypothetic 42.0 3.5E+02 0.0076 26.7 12.0 27 427-453 102-128 (202)
155 PLN03211 ABC transporter G-25; 41.9 85 0.0018 36.0 7.9 26 371-396 486-511 (659)
156 PF15038 Jiraiya: Jiraiya 41.7 2.6E+02 0.0056 27.6 9.9 46 412-457 121-166 (175)
157 PHA03096 p28-like protein; Pro 41.6 15 0.00032 38.2 1.7 49 253-306 179-233 (284)
158 PRK10263 DNA translocase FtsK; 41.4 1.5E+02 0.0031 37.4 9.9 43 412-455 149-191 (1355)
159 COG0342 SecD Preprotein transl 40.8 38 0.00082 38.0 4.7 36 404-439 350-385 (506)
160 PF07690 MFS_1: Major Facilita 40.6 3.1E+02 0.0068 26.5 10.6 19 424-442 298-316 (352)
161 COG3333 Uncharacterized protei 40.5 91 0.002 35.0 7.4 64 370-442 108-182 (504)
162 COG4129 Predicted membrane pro 40.2 29 0.00064 36.8 3.6 6 301-306 29-34 (332)
163 PF11947 DUF3464: Protein of u 39.5 88 0.0019 30.1 6.3 62 390-453 58-123 (153)
164 TIGR01129 secD protein-export 39.5 61 0.0013 35.1 6.0 12 282-293 160-171 (397)
165 TIGR00918 2A060602 The Eukaryo 39.4 1E+02 0.0022 38.0 8.4 51 400-451 994-1044(1145)
166 COG4331 Predicted membrane pro 39.3 1.1E+02 0.0025 29.5 6.9 59 393-455 100-158 (167)
167 KOG0510 Ankyrin repeat protein 38.6 81 0.0018 37.6 7.0 26 409-434 651-676 (929)
168 PF03616 Glt_symporter: Sodium 38.6 1.8E+02 0.0038 31.2 9.2 45 403-447 312-357 (368)
169 COG1480 Predicted membrane-ass 38.5 2.8E+02 0.0061 32.6 11.1 49 396-444 399-451 (700)
170 KOG0065 Pleiotropic drug resis 38.5 74 0.0016 39.8 6.9 80 372-453 1204-1296(1391)
171 KOG4323 Polycomb-like PHD Zn-f 38.3 14 0.0003 41.0 0.9 56 251-310 167-229 (464)
172 PF08114 PMP1_2: ATPase proteo 38.3 29 0.00062 26.8 2.3 36 418-458 3-38 (43)
173 TIGR00955 3a01204 The Eye Pigm 38.3 96 0.0021 35.0 7.5 24 372-395 441-464 (617)
174 PF10112 Halogen_Hydrol: 5-bro 38.1 77 0.0017 30.5 5.9 19 420-438 28-46 (199)
175 COG4769 Predicted membrane pro 38.0 4.1E+02 0.009 26.3 11.1 33 429-462 143-176 (181)
176 PF11712 Vma12: Endoplasmic re 37.7 1.6E+02 0.0034 27.2 7.6 31 422-452 106-136 (142)
177 PRK14485 putative bifunctional 37.6 2.3E+02 0.0051 33.3 10.5 90 358-447 79-180 (712)
178 PF13571 DUF4133: Domain of un 37.6 38 0.00082 30.3 3.3 55 397-453 17-71 (96)
179 PRK15176 Vi polysaccharide exp 37.5 2.3E+02 0.0051 28.7 9.5 31 427-457 153-183 (264)
180 smart00249 PHD PHD zinc finger 36.9 11 0.00025 26.5 0.0 29 254-288 1-30 (47)
181 PRK10929 putative mechanosensi 36.6 2.1E+02 0.0045 35.4 10.2 51 401-451 875-925 (1109)
182 KOG1965 Sodium/hydrogen exchan 36.5 84 0.0018 36.0 6.6 37 397-433 258-299 (575)
183 KOG0825 PHD Zn-finger protein 36.4 32 0.0007 40.7 3.4 28 280-307 123-154 (1134)
184 PF14880 COX14: Cytochrome oxi 36.1 1E+02 0.0022 24.7 5.3 42 415-456 7-48 (59)
185 PHA02972 hypothetical protein; 36.1 1E+02 0.0022 27.6 5.6 26 404-429 45-70 (109)
186 PF05290 Baculo_IE-1: Baculovi 36.1 22 0.00048 33.6 1.7 54 252-308 80-133 (140)
187 COG3851 UhpB Signal transducti 35.9 1.1E+02 0.0024 33.7 7.1 97 348-456 11-108 (497)
188 PF05957 DUF883: Bacterial pro 35.6 35 0.00075 29.2 2.7 31 414-444 62-92 (94)
189 PRK05978 hypothetical protein; 35.0 1.8E+02 0.0039 27.8 7.6 17 289-307 47-63 (148)
190 PF05656 DUF805: Protein of un 34.5 2.1E+02 0.0045 24.9 7.6 9 395-403 11-19 (120)
191 PRK10334 mechanosensitive chan 34.1 4.1E+02 0.0089 27.5 10.7 49 404-452 72-120 (286)
192 COG0344 Predicted membrane pro 33.9 2.4E+02 0.0053 28.2 8.6 66 397-463 119-192 (200)
193 KOG2082 K+/Cl- cotransporter K 33.7 1.4E+02 0.003 35.8 7.8 44 396-456 604-649 (1075)
194 KOG0297 TNF receptor-associate 33.7 23 0.00051 38.1 1.7 49 249-307 18-67 (391)
195 PF04995 CcmD: Heme exporter p 33.6 73 0.0016 24.3 3.9 16 398-415 6-21 (46)
196 TIGR00917 2A060601 Niemann-Pic 33.6 2.2E+02 0.0048 35.3 10.0 21 285-305 954-974 (1204)
197 TIGR01620 hyp_HI0043 conserved 33.6 1.4E+02 0.0031 31.4 7.3 52 415-466 35-86 (289)
198 PRK09477 napH quinol dehydroge 33.5 37 0.00081 34.4 3.1 29 376-404 47-75 (271)
199 PF06170 DUF983: Protein of un 33.3 80 0.0017 27.4 4.6 16 290-307 4-19 (86)
200 PF06638 Strabismus: Strabismu 33.3 1.7E+02 0.0036 33.2 8.1 53 370-423 131-190 (505)
201 KOG4193 G protein-coupled rece 33.3 2.4E+02 0.0051 32.6 9.5 52 382-455 522-580 (610)
202 PF11712 Vma12: Endoplasmic re 33.3 1.1E+02 0.0025 28.1 5.9 13 376-388 109-121 (142)
203 KOG0061 Transporter, ABC super 33.1 1.2E+02 0.0026 34.6 7.3 27 374-400 440-466 (613)
204 KOG0826 Predicted E3 ubiquitin 32.9 43 0.00094 35.9 3.4 54 244-306 292-345 (357)
205 TIGR02163 napH_ ferredoxin-typ 32.8 43 0.00092 33.8 3.3 52 347-398 7-62 (255)
206 COG2891 MreD Cell shape-determ 32.8 1.4E+02 0.0031 28.9 6.7 43 376-425 56-99 (167)
207 PF14667 Polysacc_synt_C: Poly 32.4 3.2E+02 0.0069 23.7 8.4 25 426-450 91-115 (146)
208 PF07069 PRRSV_2b: Porcine rep 32.2 2.1E+02 0.0046 24.0 6.6 51 402-463 17-68 (73)
209 TIGR00955 3a01204 The Eye Pigm 31.6 4.3E+02 0.0093 30.0 11.2 21 405-425 447-467 (617)
210 TIGR00870 trp transient-recept 31.4 3.8E+02 0.0083 30.7 10.9 22 396-417 509-530 (743)
211 COG1784 Predicted membrane pro 31.3 1E+02 0.0023 33.6 6.0 12 425-436 175-186 (395)
212 PF12676 DUF3796: Protein of u 31.0 1.9E+02 0.0041 26.5 6.8 45 412-457 70-114 (118)
213 KOG1729 FYVE finger containing 31.0 9.1 0.0002 39.9 -1.8 37 253-294 215-251 (288)
214 PF08006 DUF1700: Protein of u 30.7 4.7E+02 0.01 24.7 9.9 8 446-453 159-166 (181)
215 PF00924 MS_channel: Mechanose 30.7 90 0.0019 29.3 4.9 39 416-454 15-53 (206)
216 PF05977 MFS_3: Transmembrane 30.6 4.1E+02 0.0089 29.7 10.7 61 380-442 59-120 (524)
217 PRK12652 putative monovalent c 30.5 2E+02 0.0043 30.9 8.0 13 377-389 189-201 (357)
218 PF00689 Cation_ATPase_C: Cati 30.5 3.4E+02 0.0075 24.9 8.7 30 397-426 126-157 (182)
219 KOG4185 Predicted E3 ubiquitin 30.3 40 0.00086 34.1 2.6 48 253-306 4-54 (296)
220 PF03023 MVIN: MviN-like prote 30.3 5.1E+02 0.011 28.0 11.1 66 375-440 104-171 (451)
221 KOG4812 Golgi-associated prote 30.3 63 0.0014 33.4 4.0 51 411-465 209-259 (262)
222 PRK12895 ubiA prenyltransferas 30.2 2.1E+02 0.0046 29.7 7.9 35 407-441 111-146 (286)
223 KOG2290 Rhomboid family protei 29.8 1.2E+02 0.0025 34.3 6.1 15 375-389 568-582 (652)
224 PF12811 BaxI_1: Bax inhibitor 29.3 4.1E+02 0.0089 27.8 9.7 19 399-417 117-135 (274)
225 PF00628 PHD: PHD-finger; Int 29.3 27 0.00058 26.1 0.9 44 254-303 1-49 (51)
226 PF06459 RR_TM4-6: Ryanodine R 29.1 1.2E+02 0.0026 31.5 5.9 40 404-456 157-196 (274)
227 COG5220 TFB3 Cdk activating ki 29.1 18 0.00038 37.4 -0.1 52 251-308 9-65 (314)
228 PRK05812 secD preprotein trans 29.1 75 0.0016 35.6 4.7 30 406-435 342-371 (498)
229 PF11241 DUF3043: Protein of u 29.0 1.4E+02 0.0029 29.3 5.8 21 435-455 140-160 (170)
230 COG5523 Predicted integral mem 29.0 5.7E+02 0.012 26.9 10.5 74 370-443 48-155 (271)
231 PF01102 Glycophorin_A: Glycop 29.0 72 0.0016 29.5 3.8 37 424-464 64-100 (122)
232 TIGR01522 ATPase-IIA2_Ca golgi 29.0 2.7E+02 0.0059 33.1 9.4 30 397-426 823-854 (884)
233 PRK04125 murein hydrolase regu 28.8 5.1E+02 0.011 24.6 11.7 95 351-453 14-118 (141)
234 TIGR00956 3a01205 Pleiotropic 28.8 1.2E+02 0.0027 37.9 6.9 26 370-395 1176-1201(1394)
235 PRK15397 nicotinamide riboside 28.7 1.6E+02 0.0034 29.9 6.5 19 403-421 71-89 (239)
236 PLN02248 cellulose synthase-li 28.7 2.2E+02 0.0049 35.2 8.7 24 340-363 976-1000(1135)
237 PF07047 OPA3: Optic atrophy 3 28.4 1.7E+02 0.0037 27.0 6.1 32 430-463 78-109 (134)
238 PF06790 UPF0259: Uncharacteri 28.2 6.7E+02 0.015 25.8 11.7 67 382-451 170-243 (248)
239 PF11872 DUF3392: Protein of u 28.2 2.4E+02 0.0053 25.6 6.9 52 378-430 26-79 (106)
240 KOG4275 Predicted E3 ubiquitin 28.1 19 0.00042 38.0 -0.1 44 252-309 300-344 (350)
241 PRK15065 PTS system mannose-sp 28.0 1.7E+02 0.0037 30.3 6.7 19 393-412 201-219 (262)
242 PRK09478 mglC beta-methylgalac 27.9 7.2E+02 0.016 26.0 11.4 19 423-441 103-121 (336)
243 TIGR00439 ftsX putative protei 27.9 6.4E+02 0.014 26.3 11.0 28 367-394 218-248 (309)
244 PRK09459 pspG phage shock prot 27.8 2.6E+02 0.0056 24.2 6.6 42 358-401 10-51 (76)
245 PF14835 zf-RING_6: zf-RING of 27.8 18 0.0004 30.1 -0.2 43 253-306 8-50 (65)
246 KOG0269 WD40 repeat-containing 27.7 42 0.00091 39.5 2.5 46 253-306 780-827 (839)
247 PRK10352 nickel transporter pe 27.5 5.1E+02 0.011 27.0 10.2 52 371-422 108-163 (314)
248 PRK10755 sensor protein BasS/P 27.4 3E+02 0.0065 27.7 8.4 7 396-402 6-12 (356)
249 PLN00026 aquaporin NIP; Provi 27.4 2E+02 0.0043 30.3 7.2 6 272-277 42-47 (298)
250 TIGR00400 mgtE Mg2+ transporte 27.2 1.5E+02 0.0033 32.3 6.5 13 281-293 241-253 (449)
251 TIGR01726 HEQRo_perm_3TM amine 27.2 3.8E+02 0.0082 22.8 7.8 40 371-410 19-60 (99)
252 PF11289 DUF3092: Protein of u 27.2 4.4E+02 0.0095 27.1 9.1 30 428-457 106-135 (273)
253 PF06123 CreD: Inner membrane 27.0 5.1E+02 0.011 28.8 10.4 12 347-358 304-315 (430)
254 KOG1829 Uncharacterized conser 27.0 24 0.00053 40.2 0.5 21 279-304 538-558 (580)
255 TIGR00833 actII Transport prot 26.9 2.6E+02 0.0057 33.4 8.8 26 422-448 800-825 (910)
256 COG5349 Uncharacterized protei 26.8 77 0.0017 29.6 3.5 18 288-307 34-51 (126)
257 PF07331 TctB: Tripartite tric 26.8 3.2E+02 0.007 24.2 7.6 15 408-422 123-137 (141)
258 PRK10473 multidrug efflux syst 26.5 6.8E+02 0.015 25.3 11.9 14 396-409 268-281 (392)
259 MTH00043 ND4L NADH dehydrogena 26.4 4.3E+02 0.0094 23.0 9.8 59 395-454 23-85 (98)
260 COG1086 Predicted nucleoside-d 26.3 4.9E+02 0.011 30.1 10.4 33 367-402 28-60 (588)
261 PF04138 GtrA: GtrA-like prote 26.2 1.2E+02 0.0025 26.0 4.5 31 429-459 28-58 (117)
262 PLN03211 ABC transporter G-25; 26.2 3.5E+02 0.0076 31.2 9.5 21 405-425 493-513 (659)
263 PRK12460 2-keto-3-deoxyglucona 26.2 3.7E+02 0.008 28.7 8.9 45 403-449 225-269 (312)
264 PRK10929 putative mechanosensi 26.1 2.8E+02 0.0061 34.3 9.0 9 364-372 628-636 (1109)
265 PRK15099 O-antigen translocase 26.1 7.6E+02 0.017 25.7 12.4 8 284-291 211-218 (416)
266 PF10003 DUF2244: Integral mem 25.9 2E+02 0.0044 26.5 6.2 33 395-429 9-41 (140)
267 TIGR03023 WcaJ_sugtrans Undeca 25.9 3.8E+02 0.0082 28.8 9.2 18 429-446 96-113 (451)
268 TIGR00711 efflux_EmrB drug res 25.8 7.1E+02 0.015 25.8 10.9 8 361-368 280-287 (485)
269 PLN03140 ABC transporter G fam 25.8 2.4E+02 0.0053 35.7 8.6 26 370-395 1294-1319(1470)
270 PF10883 DUF2681: Protein of u 25.6 1.5E+02 0.0033 26.0 5.0 9 431-439 7-15 (87)
271 PF13901 DUF4206: Domain of un 25.3 43 0.00093 32.8 1.8 41 252-304 152-197 (202)
272 TIGR03141 cytochro_ccmD heme e 25.3 1.3E+02 0.0027 22.9 4.0 16 398-415 7-22 (45)
273 PF09726 Macoilin: Transmembra 25.3 2.2E+02 0.0047 33.4 7.6 31 432-463 156-186 (697)
274 COG1108 ZnuB ABC-type Mn2+/Zn2 25.3 4.7E+02 0.01 27.2 9.4 22 421-442 89-110 (274)
275 PRK15120 lipopolysaccharide AB 25.1 1.5E+02 0.0032 31.0 5.8 19 422-440 324-342 (366)
276 KOG3814 Signaling protein van 25.1 2.6E+02 0.0057 31.0 7.6 17 434-450 224-240 (531)
277 PF05875 Ceramidase: Ceramidas 25.0 5.1E+02 0.011 25.9 9.4 43 400-442 140-186 (262)
278 PLN02915 cellulose synthase A 25.0 3.9E+02 0.0084 33.0 9.7 26 339-364 882-908 (1044)
279 PLN02189 cellulose synthase 24.8 2.8E+02 0.0061 34.1 8.5 25 340-364 881-906 (1040)
280 PF03030 H_PPase: Inorganic H+ 24.7 9.4E+02 0.02 28.5 12.4 100 348-449 46-174 (682)
281 TIGR00927 2A1904 K+-dependent 24.6 3.5E+02 0.0076 33.3 9.1 24 429-452 590-613 (1096)
282 PF10011 DUF2254: Predicted me 24.5 7.3E+02 0.016 26.5 10.9 37 405-441 94-140 (371)
283 PF13937 DUF4212: Domain of un 24.5 1.1E+02 0.0023 26.5 3.8 22 404-425 51-72 (81)
284 PRK13735 conjugal transfer mat 24.4 3.3E+02 0.0071 33.2 9.0 85 344-453 325-423 (942)
285 PF04341 DUF485: Protein of un 24.4 1.5E+02 0.0032 25.6 4.7 21 400-420 56-76 (91)
286 PRK11462 putative transporter; 24.3 5.8E+02 0.013 27.3 10.2 10 446-455 345-354 (460)
287 KOG0956 PHD finger protein AF1 24.3 1.3E+02 0.0027 35.6 5.3 118 184-309 55-184 (900)
288 PF02460 Patched: Patched fami 24.3 5E+02 0.011 30.3 10.4 88 361-449 663-769 (798)
289 PLN02436 cellulose synthase A 24.1 4E+02 0.0087 33.0 9.6 25 339-363 934-959 (1094)
290 PF03609 EII-Sor: PTS system s 24.1 2.9E+02 0.0062 27.9 7.4 22 391-413 199-220 (238)
291 PF13726 Na_H_antiport_2: Na+- 24.0 93 0.002 27.5 3.4 22 415-436 10-31 (88)
292 PRK10952 glycine betaine trans 24.0 9E+02 0.019 25.9 11.4 19 370-388 155-173 (355)
293 COG4452 CreD Inner membrane pr 24.0 2.7E+02 0.0059 30.8 7.5 41 406-450 327-372 (443)
294 PF06123 CreD: Inner membrane 23.9 4.5E+02 0.0097 29.2 9.3 52 382-438 363-414 (430)
295 PF13194 DUF4010: Domain of un 23.8 7.3E+02 0.016 24.7 10.3 93 349-455 5-107 (211)
296 PF03739 YjgP_YjgQ: Predicted 23.8 5.2E+02 0.011 26.3 9.4 19 370-388 54-72 (354)
297 COG0786 GltS Na+/glutamate sym 23.8 3.8E+02 0.0081 29.7 8.5 44 404-447 314-358 (404)
298 KOG0955 PHD finger protein BR1 23.7 32 0.00069 41.8 0.7 51 250-304 217-268 (1051)
299 PRK11427 multidrug efflux syst 23.7 3.9E+02 0.0084 31.5 9.1 18 429-446 482-499 (683)
300 PF06081 DUF939: Bacterial pro 23.4 3.7E+02 0.0081 24.7 7.5 19 428-446 122-140 (141)
301 PF09583 Phageshock_PspG: Phag 23.3 3.7E+02 0.0081 22.6 6.5 42 358-401 10-51 (65)
302 PLN03140 ABC transporter G fam 23.2 1.7E+02 0.0038 37.0 6.7 25 371-395 617-641 (1470)
303 TIGR03025 EPS_sugtrans exopoly 23.2 4.5E+02 0.0098 28.2 9.1 23 430-452 94-116 (445)
304 PF15013 CCSMST1: CCSMST1 fami 23.2 52 0.0011 28.3 1.6 20 340-359 30-50 (77)
305 KOG2846 Predicted membrane pro 23.1 1.1E+02 0.0025 32.7 4.5 56 402-457 20-75 (328)
306 PRK15081 glutathione ABC trans 23.1 8.4E+02 0.018 25.3 10.8 15 355-369 65-79 (306)
307 KOG3415 Putative Rab5-interact 23.1 3.7E+02 0.008 25.1 7.1 16 430-445 108-123 (129)
308 COG0428 Predicted divalent hea 23.1 2.8E+02 0.0061 28.4 7.2 62 395-456 178-243 (266)
309 PHA03237 envelope glycoprotein 22.9 6E+02 0.013 28.3 10.0 36 422-457 323-358 (424)
310 MTH00125 ND4L NADH dehydrogena 22.9 5.1E+02 0.011 22.6 9.8 65 387-452 15-83 (98)
311 KOG2887 Membrane protein invol 22.7 7.6E+02 0.016 24.5 9.8 33 409-441 118-150 (175)
312 TIGR00797 matE putative efflux 22.5 5.2E+02 0.011 25.6 8.9 17 426-442 172-188 (342)
313 PRK10404 hypothetical protein; 22.3 78 0.0017 28.2 2.6 30 415-444 70-99 (101)
314 TIGR00155 pqiA_fam integral me 22.3 2.2E+02 0.0047 31.0 6.5 11 296-306 33-43 (403)
315 KOG1001 Helicase-like transcri 22.3 41 0.00089 39.0 1.2 47 253-308 455-501 (674)
316 PLN02638 cellulose synthase A 22.2 3.2E+02 0.0069 33.8 8.3 25 340-364 919-944 (1079)
317 PRK15122 magnesium-transportin 22.1 4.9E+02 0.011 31.3 9.9 55 373-427 811-870 (903)
318 PF14068 YuiB: Putative membra 22.1 87 0.0019 28.3 2.9 26 423-448 1-26 (102)
319 KOG3618 Adenylyl cyclase [Gene 21.9 3.8E+02 0.0083 32.5 8.5 44 364-407 100-147 (1318)
320 COG2855 Predicted membrane pro 21.9 4.9E+02 0.011 28.1 8.8 96 348-448 17-140 (334)
321 PRK10914 dipeptide transporter 21.9 7.1E+02 0.015 26.2 10.1 53 371-423 106-162 (339)
322 PF10841 DUF2644: Protein of u 21.9 97 0.0021 25.6 2.9 33 407-439 20-52 (60)
323 TIGR00210 gltS sodium--glutama 21.8 5.3E+02 0.011 28.2 9.3 45 403-447 310-355 (398)
324 PHA03242 envelope glycoprotein 21.8 5.9E+02 0.013 28.4 9.7 39 419-457 317-355 (428)
325 KOG3599 Ca2+-modulated nonsele 21.7 4E+02 0.0086 31.9 8.9 53 396-448 615-672 (798)
326 PRK12933 secD preprotein trans 21.6 1.3E+02 0.0027 34.8 4.7 20 92-111 156-175 (604)
327 PRK14726 bifunctional preprote 21.5 1.5E+02 0.0032 35.6 5.4 30 404-433 379-408 (855)
328 PRK12911 bifunctional preprote 21.5 1.9E+02 0.0042 36.4 6.5 55 400-454 934-988 (1403)
329 PF11196 DUF2834: Protein of u 21.5 3.5E+02 0.0076 23.9 6.5 16 428-443 74-89 (97)
330 PRK03562 glutathione-regulated 21.5 9.8E+02 0.021 27.4 11.8 53 396-452 84-136 (621)
331 KOG3188 Uncharacterized conser 21.4 1.6E+02 0.0034 30.1 4.8 62 372-442 137-211 (246)
332 COG4758 Predicted membrane pro 21.3 6E+02 0.013 26.2 9.0 6 351-356 9-14 (235)
333 PRK09757 PTS system N-acetylga 21.3 6.7E+02 0.014 26.0 9.5 14 368-381 93-106 (267)
334 PRK04164 hypothetical protein; 21.3 4.1E+02 0.0089 25.9 7.6 24 431-454 68-91 (181)
335 KOG1512 PHD Zn-finger protein 21.3 29 0.00062 36.7 -0.3 53 253-310 315-368 (381)
336 KOG2325 Predicted transporter/ 21.3 1.3E+02 0.0029 33.7 4.7 53 370-422 427-479 (488)
337 COG5034 TNG2 Chromatin remodel 21.2 80 0.0017 32.9 2.8 30 274-305 241-270 (271)
338 PF03854 zf-P11: P-11 zinc fin 21.2 51 0.0011 26.2 1.1 25 280-306 21-45 (50)
339 PRK09776 putative diguanylate 21.2 3.4E+02 0.0073 31.9 8.2 16 372-387 25-40 (1092)
340 PLN02248 cellulose synthase-li 21.1 3.5E+02 0.0076 33.6 8.4 36 268-308 143-178 (1135)
341 PF06432 GPI2: Phosphatidylino 20.9 8.6E+02 0.019 25.0 10.3 12 358-369 147-158 (282)
342 PRK11689 aromatic amino acid e 20.9 8.6E+02 0.019 24.4 10.9 12 422-433 249-260 (295)
343 COG0601 DppB ABC-type dipeptid 20.7 4.2E+02 0.0092 27.9 8.1 19 370-388 104-122 (317)
344 TIGR00155 pqiA_fam integral me 20.7 2.5E+02 0.0053 30.6 6.5 11 296-306 230-240 (403)
345 PF06738 DUF1212: Protein of u 20.6 4.7E+02 0.01 24.6 7.8 19 376-394 128-146 (193)
346 PF05640 NKAIN: Na,K-Atpase In 20.5 4.4E+02 0.0095 26.6 7.7 58 358-415 21-78 (200)
347 PF14333 DUF4389: Domain of un 20.5 3.1E+02 0.0066 23.2 5.8 32 374-415 11-42 (80)
348 KOG4358 Uncharacterized conser 20.3 3.9E+02 0.0085 30.4 7.9 52 358-415 28-79 (584)
349 PRK11281 hypothetical protein; 20.3 3.2E+02 0.0069 33.9 8.0 10 403-412 693-702 (1113)
350 KOG2399 K+-dependent Na+:Ca2+ 20.2 4.9E+02 0.011 30.2 9.0 43 373-415 417-460 (605)
351 PF04632 FUSC: Fusaric acid re 20.2 4.7E+02 0.01 29.1 8.8 19 396-414 99-117 (650)
352 COG5000 NtrY Signal transducti 20.1 3E+02 0.0065 32.3 7.2 17 397-413 37-53 (712)
353 COG2211 MelB Na+/melibiose sym 20.0 6.6E+02 0.014 28.2 9.7 59 394-455 299-363 (467)
354 PF02516 STT3: Oligosaccharyl 20.0 7.3E+02 0.016 26.5 9.9 22 345-366 151-172 (483)
No 1
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.71 E-value=3.1e-18 Score=169.23 Aligned_cols=206 Identities=27% Similarity=0.393 Sum_probs=142.4
Q ss_pred cCCCCCCCCCCcceeccccccCCC-ceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccccccccccccCCcc
Q 010537 243 EAGEDIPEEEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPVTLLKIHNPQT 321 (508)
Q Consensus 243 ~~~e~~~eee~~CrICl~e~ee~e-~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp~~l~ri~~~q~ 321 (508)
+...+.+.++..||||+++.++.. ..++.||.|+|+++++|+.|+++|+..|++.+||+|++.+.+......+....
T Consensus 69 ~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~-- 146 (323)
T KOG1609|consen 69 ESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVI-- 146 (323)
T ss_pred CccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeeh--
Confidence 333444555788999998765432 27899999999999999999999999999999999999998876543332211
Q ss_pred ccCCcchh-hhhccc-cccceeeccchhhhHHHHHHHHHHHHHhhhcccchhhhhhh-hhHHHHHHHHHHHHhhhhhhhH
Q 010537 322 VIRRPQTI-VQQREV-ARYRVWQDMPVLIMVSMLAYFCFLEQLLVSDLGARALAISL-PFSCVLGLLSSMIASTMVSRSY 398 (508)
Q Consensus 322 ~~rr~~~~-aqq~~~-~~~r~W~d~p~LViismLayFcFLeqLLv~~lg~~Alaisl-PFs~vlgll~S~~as~mv~r~y 398 (508)
........ ...... .....|....+.+.+..++++++.+..+...++....++.. +..+.+|++.......+....|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 226 (323)
T KOG1609|consen 147 SKVRSGALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGY 226 (323)
T ss_pred hhhhhHhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHH
Confidence 00000000 000000 11123333444455666777777777666666665455555 5556689998888888888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc---hhHHHHHHHH-HhHHHHHHhhhHHHHHH
Q 010537 399 IWAYASFQFAVVILFAHIFYSVLNV---NPILAVLLSS-FTGFGIAISTNSLIVEY 450 (508)
Q Consensus 399 ~W~ya~~qF~lvvlf~h~fy~~~~~---~~v~~illa~-f~gfg~~m~~n~~~~e~ 450 (508)
+|++....+.++.+++.+|+.+.++ ..+...++.+ +.|++++.+...++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
T KOG1609|consen 227 IFILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLTPLYIVS 282 (323)
T ss_pred HHHHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccceeeecc
Confidence 9999999999999999999988877 3444433333 88999988877777775
No 2
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.48 E-value=1.7e-14 Score=110.75 Aligned_cols=49 Identities=47% Similarity=1.102 Sum_probs=44.5
Q ss_pred cceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccc
Q 010537 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr 303 (508)
+||||++ .+++++.+++||.|+|++++||..||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999998 445667889999999999999999999999999899999996
No 3
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.34 E-value=4.9e-13 Score=101.85 Aligned_cols=47 Identities=36% Similarity=0.970 Sum_probs=37.9
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpIC 302 (508)
||||+++.++++ .++.||.|+|+++++|++||++|+..+++.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 899998876544 88999999999999999999999999999999998
No 4
>PHA02862 5L protein; Provisional
Probab=99.32 E-value=8.1e-13 Score=121.90 Aligned_cols=52 Identities=27% Similarity=0.671 Sum_probs=46.3
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.+.||||+++.+++ .-||.|+|+++++|++|+.+|++.+++..||+|+++|.
T Consensus 2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 35799999875432 58999999999999999999999999999999999995
No 5
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.28 E-value=3.3e-12 Score=119.44 Aligned_cols=57 Identities=30% Similarity=0.698 Sum_probs=49.0
Q ss_pred CCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 248 IPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 248 ~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
....+..||||+++.. ....||.|+|+++++|++|+++|+..+++..||+|+++|..
T Consensus 4 ~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 4 VSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred cCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3456788999997743 23579999999999999999999999999999999999953
No 6
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-10 Score=121.08 Aligned_cols=50 Identities=34% Similarity=0.771 Sum_probs=46.0
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+.|.||+++|++|+.+++|||+ |.||..||+.||... .+.||+||++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 6899999999999999999999 999999999999885 5679999998864
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=9.2e-10 Score=109.80 Aligned_cols=61 Identities=23% Similarity=0.592 Sum_probs=50.3
Q ss_pred CCCCCcceeccccccCCCce-EEecCCCCCccceechhhHHHHHhhhCC------ccccccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDM-FKLECSCKGELALAHKECAVKWFTIKGN------KTCDVCKQDVQNL 309 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~-l~LPC~CKGsLh~fH~~Cl~kWL~~kg~------~tCpICr~~~~nv 309 (508)
.+.|..|+||+...+++... .+-||.|+|+.|++|+.|+.+|+..|.. -.||.|+.+|.-+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 45678999999876655433 6899999999999999999999987632 3899999999643
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.96 E-value=4e-10 Score=83.44 Aligned_cols=44 Identities=36% Similarity=0.956 Sum_probs=38.8
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr 303 (508)
+.|.||++++.+++....++|+ |.||.+||.+|++. +.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHh--CCcCCccC
Confidence 3699999999888889999998 99999999999998 57999997
No 9
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=98.92 E-value=1.3e-09 Score=121.23 Aligned_cols=58 Identities=31% Similarity=0.780 Sum_probs=51.7
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
+.+.||||++|..+ |+++--||+|.|+++++|++|+..|+..+++..|++|+++++.-
T Consensus 11 d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 11 DKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred cchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 44789999988654 57888999999999999999999999999999999999999743
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.55 E-value=6.7e-08 Score=79.65 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=33.8
Q ss_pred CcceeccccccCC---------Cc-eEEecCCCCCccceechhhHHHHHhhhCCccccccc
Q 010537 253 AVCRICLVELGEG---------GD-MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCK 303 (508)
Q Consensus 253 ~~CrICl~e~ee~---------e~-~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr 303 (508)
+.|.||++++.+. +. +...+|+ |.||..||.+||+. +.+||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTT--SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhc--CCcCCCCC
Confidence 3499999998321 22 3345799 99999999999988 67999997
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.3e-08 Score=99.43 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=45.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
+.+-+|.||++++-.++..+.+||. |.||..|+++|+.-- +..||+|+..+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y-~~~CPvCrt~i 371 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY-SNKCPVCRTAI 371 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh-cccCCccCCCC
Confidence 3457899999999888899999999 999999999999832 67999999876
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.34 E-value=2.9e-07 Score=91.67 Aligned_cols=52 Identities=21% Similarity=0.495 Sum_probs=40.8
Q ss_pred CCCcceeccccccCCCc-----eEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 251 EEAVCRICLVELGEGGD-----MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~-----~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
.+..|.||++++.+.+. ....+|+ |.||.+||.+|++. +.+||+||..+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 35679999998765331 2345688 99999999999986 77999999988644
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.6e-07 Score=93.59 Aligned_cols=53 Identities=25% Similarity=0.683 Sum_probs=43.3
Q ss_pred CCCCCCcceeccccccCCC----------ceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 248 IPEEEAVCRICLVELGEGG----------DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 248 ~~eee~~CrICl~e~ee~e----------~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
...++..|.||++|+-+.+ .+.+|||+ |.+|-+|++.|+.. ..+|||||..+.
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ER--qQTCPICr~p~i 345 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLER--QQTCPICRRPVI 345 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHh--ccCCCcccCccc
Confidence 3456788999999943222 45789999 99999999999998 789999999854
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.20 E-value=8.1e-07 Score=76.08 Aligned_cols=51 Identities=27% Similarity=0.696 Sum_probs=37.5
Q ss_pred CCcceeccccccC--------C-CceEEec-CCCCCccceechhhHHHHHhhh-CCccccccccccc
Q 010537 252 EAVCRICLVELGE--------G-GDMFKLE-CSCKGELALAHKECAVKWFTIK-GNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee--------~-e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~k-g~~tCpICr~~~~ 307 (508)
++.|.||...|+. + +-+++.+ |+ |.||..||.+|+... .+..||+||+.++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~-----H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCS-----HNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCc-----cHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5569999887752 1 1233322 55 999999999999873 4679999999875
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.03 E-value=4.2e-06 Score=59.31 Aligned_cols=45 Identities=31% Similarity=0.815 Sum_probs=35.8
Q ss_pred cceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 254 VCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
.|.||++.+. +.....+|+ |.||..|++.|++. ++..||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 4899998872 334455599 99999999999987 567899999753
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.90 E-value=1.1e-05 Score=61.28 Aligned_cols=47 Identities=30% Similarity=0.726 Sum_probs=38.6
Q ss_pred CCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+..|.||++... +...+||+ |. |-..|+.+|++. +..||+||..+..
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCG-----HLCFCEECAERLLKR--KKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTC-----EEEEEHHHHHHHHHT--TSBBTTTTBB-SE
T ss_pred cCCCccCCccCC---ceEEeCCC-----ChHHHHHHhHHhccc--CCCCCcCChhhcC
Confidence 467999998743 47889999 99 999999999995 8899999998854
No 17
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.89 E-value=1.1e-05 Score=78.44 Aligned_cols=51 Identities=31% Similarity=0.595 Sum_probs=41.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhh--------------hCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--------------KGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~--------------kg~~tCpICr~~~~n 308 (508)
.++..|.||++.+. +..+++|+ |.|+..||.+|+.. ++...||+||..+..
T Consensus 16 ~~~~~CpICld~~~---dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVR---DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCC---CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 35678999998764 46778899 99999999999863 234589999999963
No 18
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.7e-06 Score=71.78 Aligned_cols=49 Identities=24% Similarity=0.613 Sum_probs=39.0
Q ss_pred cceeccccccC---------CCceEEec-CCCCCccceechhhHHHHHhhhCC-ccccccccccc
Q 010537 254 VCRICLVELGE---------GGDMFKLE-CSCKGELALAHKECAVKWFTIKGN-KTCDVCKQDVQ 307 (508)
Q Consensus 254 ~CrICl~e~ee---------~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~-~tCpICr~~~~ 307 (508)
+|.||...|+. ++-+++++ |. |.||..||.+|+.++.+ ..||+||++++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~-----h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCL-----HAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHH-----HHHHHHHHHHHhcCccccccCCcchheeE
Confidence 79999888752 33455666 66 99999999999987655 49999999985
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.1e-06 Score=90.29 Aligned_cols=50 Identities=32% Similarity=0.779 Sum_probs=43.3
Q ss_pred CCCCcceeccccccCCCc--eEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGD--MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~--~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
..+..|.||++++..+.+ ..+|+|. |.||..|+..||+. ..+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhhh
Confidence 346789999999876554 7799999 99999999999999 78999999943
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.74 E-value=2.4e-05 Score=53.53 Aligned_cols=39 Identities=41% Similarity=0.914 Sum_probs=32.9
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpIC 302 (508)
|.||++. ......++|+ |.||..|++.|++ .++..||+|
T Consensus 1 C~iC~~~---~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 7899876 3467889999 9999999999998 457789987
No 21
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.63 E-value=1.4e-05 Score=91.21 Aligned_cols=51 Identities=29% Similarity=0.748 Sum_probs=38.6
Q ss_pred CCcceeccccccCCCceEEec---CC-CCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLE---CS-CKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LP---C~-CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
..+|+||..-+.. -.+.+| |. || |.||..|+.+||+.+++.+||+||.++.
T Consensus 1469 ~eECaICYsvL~~--vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDM--VDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHH--HhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 4569999755431 122344 43 55 9999999999999999999999998774
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=97.63 E-value=3.1e-05 Score=76.82 Aligned_cols=56 Identities=18% Similarity=0.473 Sum_probs=41.2
Q ss_pred CCCCCcceeccccccCC----C-c-eEEecCCCCCccceechhhHHHHHhhh----CCccccccccccccc
Q 010537 249 PEEEAVCRICLVELGEG----G-D-MFKLECSCKGELALAHKECAVKWFTIK----GNKTCDVCKQDVQNL 309 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~----e-~-~l~LPC~CKGsLh~fH~~Cl~kWL~~k----g~~tCpICr~~~~nv 309 (508)
...+.+|.||++..-+. + . .+..+|. |.|...||.+|.+.+ ..+.||+||..+..+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 34568899999875321 1 1 2234588 999999999999864 245799999999865
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.57 E-value=3.8e-05 Score=65.42 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=35.7
Q ss_pred Ccceecccccc-----------C-CCceEEec-CCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 253 AVCRICLVELG-----------E-GGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 253 ~~CrICl~e~e-----------e-~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++|.||...+. . ++-...-+ |+ |.||.+||.+||.+ +..||+|++.++
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~Cn-----HaFH~HCI~rWL~T--k~~CPld~q~w~ 81 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCN-----HAFHDHCIYRWLDT--KGVCPLDRQTWV 81 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecc-----hHHHHHHHHHHHhh--CCCCCCCCceeE
Confidence 56888865442 1 22234444 88 99999999999999 678999999885
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.57 E-value=5.2e-05 Score=54.88 Aligned_cols=41 Identities=29% Similarity=0.818 Sum_probs=35.2
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpIC 302 (508)
|.||++.+.+ ....++|+ |.|+..|+.+|++..+...||+|
T Consensus 1 C~iC~~~~~~--~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 7899987753 33589999 99999999999997778899998
No 25
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.48 E-value=9.6e-05 Score=53.59 Aligned_cols=39 Identities=38% Similarity=0.778 Sum_probs=31.7
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVC 302 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpIC 302 (508)
|.||++.+.+ ....++|+ |.|.++|+.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 7899987763 34689999 99999999999988 5799998
No 26
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.47 E-value=4.1e-05 Score=62.92 Aligned_cols=53 Identities=26% Similarity=0.612 Sum_probs=24.4
Q ss_pred CCcceeccccccCCCceEEecC---CCCCccceechhhHHHHHhhhCC---------ccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLEC---SCKGELALAHKECAVKWFTIKGN---------KTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC---~CKGsLh~fH~~Cl~kWL~~kg~---------~tCpICr~~~~ 307 (508)
+..|.||.....+++..-.+-| .|+ +.||..||.+||....+ -.||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3569999987653444444555 465 89999999999975311 26999998773
No 27
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=97.23 E-value=0.0015 Score=56.44 Aligned_cols=46 Identities=20% Similarity=0.484 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHH
Q 010537 399 IWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEY 450 (508)
Q Consensus 399 ~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~ 450 (508)
+|+++ +-+++|++.++|+.+|.+|++||.+.|+|++|+|.|-+++-
T Consensus 16 ~wv~~------lG~wfHIvarLV~~~P~mA~~LAeiia~~Lvl~GgYrILda 61 (93)
T PF09679_consen 16 MWVFS------LGFWFHIVARLVYRQPEMAFFLAEIIAVGLVLSGGYRILDA 61 (93)
T ss_pred chhhH------HHHHHHHHHHHHHhChHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 47754 46789999999999999999999999999999999888764
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00019 Score=77.73 Aligned_cols=51 Identities=22% Similarity=0.703 Sum_probs=38.3
Q ss_pred CCCCcceecccccc---CCC-----------ceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELG---EGG-----------DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~e---e~e-----------~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
+...+|.||+.+.+ ++. +-+..||+ |.||+.|+++|..+. +-.||+||..+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCC
Confidence 34567999997753 111 23456999 999999999999852 56999999876
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0005 Score=68.47 Aligned_cols=53 Identities=28% Similarity=0.485 Sum_probs=43.9
Q ss_pred CCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCc-ccccccccccc
Q 010537 248 IPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK-TCDVCKQDVQN 308 (508)
Q Consensus 248 ~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~-tCpICr~~~~n 308 (508)
.+.....|-|||+.- .++++..|+ |+|==-||.+||..+.+. .||+||.++.-
T Consensus 43 ~~~~~FdCNICLd~a---kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA---KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeecccc---CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 445668899999653 468889999 999999999999887655 66999999984
No 30
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.14 E-value=0.00051 Score=53.47 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.3
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
..|.||++-+.+ +..++|+ |.|-+.||.+|++. +.+||+|+..+.
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC---CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 469999987653 6788998 99999999999987 678999998773
No 31
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00019 Score=73.05 Aligned_cols=52 Identities=27% Similarity=0.736 Sum_probs=41.5
Q ss_pred CCCcceeccccccCC-------CceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEG-------GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~-------e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++.+|.||-..+... |+.-+|.|+ |.||..||.-|...-++.+||-||+.++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 456799996554322 256688999 9999999999987766889999999885
No 32
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.04 E-value=0.00042 Score=51.67 Aligned_cols=43 Identities=21% Similarity=0.535 Sum_probs=37.4
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
|.||++.+.+....+.++|+ |.|...|+.++. .....||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 88999999655678899999 999999999998 44779999985
No 33
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00066 Score=71.97 Aligned_cols=46 Identities=24% Similarity=0.730 Sum_probs=34.9
Q ss_pred CCcceeccccccC-CCceEEec-CCCCCccceechhhHHHHHhhhCC-ccccccc
Q 010537 252 EAVCRICLVELGE-GGDMFKLE-CSCKGELALAHKECAVKWFTIKGN-KTCDVCK 303 (508)
Q Consensus 252 e~~CrICl~e~ee-~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~-~tCpICr 303 (508)
.+.|.|| .++.. ..++--.. |+ |.||..|+.+||..--. +.||+|+
T Consensus 4 ~A~C~Ic-~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHIC-IDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEe-ccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 4679999 44443 33444444 98 99999999999987655 6999999
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0018 Score=66.48 Aligned_cols=54 Identities=22% Similarity=0.600 Sum_probs=44.6
Q ss_pred CCCCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 246 EDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 246 e~~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
..+++....|.+|++.-. ++--.||+ |.|=-.||..|... +..||+||..+..-
T Consensus 233 ~~i~~a~~kC~LCLe~~~---~pSaTpCG-----HiFCWsCI~~w~~e--k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRS---NPSATPCG-----HIFCWSCILEWCSE--KAECPLCREKFQPS 286 (293)
T ss_pred ccCCCCCCceEEEecCCC---CCCcCcCc-----chHHHHHHHHHHcc--ccCCCcccccCCCc
Confidence 346667788999997654 46689999 99999999999998 56699999988643
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.61 E-value=0.0011 Score=70.88 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+....|.||++.+. ....++|. |.|...||..|+.. ...||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~---~PvitpCg-----H~FCs~CI~~~l~~--~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD---VPVLTSCS-----HTFCSLCIRRCLSN--QPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh---CccCCCCC-----CchhHHHHHHHHhC--CCCCCCCCCcccc
Confidence 35678999998775 35678999 99999999999987 4589999998863
No 36
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.55 E-value=0.0014 Score=74.30 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=43.8
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp~ 311 (508)
....|.+|+..+.++...-..+|. |+||.+||+.|-+. -.+||+|+.+|..+-+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~-----H~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTA-----HYFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccc-----cccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 456799998877655445567788 99999999999887 7899999999986543
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.48 E-value=0.0012 Score=71.08 Aligned_cols=48 Identities=25% Similarity=0.732 Sum_probs=38.3
Q ss_pred CCCcceeccccccCCC-ceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e-~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
|-..|.|||+.+.+.- .++...|. |-||..|+.+|- +.+||+||+.-.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWW----DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcc----cCcChhhhhhcC
Confidence 4578999998876432 34566698 999999999994 558999999876
No 38
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0028 Score=61.32 Aligned_cols=54 Identities=19% Similarity=0.409 Sum_probs=42.2
Q ss_pred CCCCCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 245 GEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 245 ~e~~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
.+...++-.-|.|||+.+.+. .+.-..|+ |.|=++||+.-++. .+.||+|+..+
T Consensus 124 ~~~~~~~~~~CPiCl~~~sek-~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 124 DPLRKEGTYKCPICLDSVSEK-VPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred cccccccccCCCceecchhhc-cccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 334445557899999998742 23446798 99999999999988 88999999855
No 39
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0025 Score=56.86 Aligned_cols=28 Identities=18% Similarity=0.604 Sum_probs=25.7
Q ss_pred CCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 273 CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 273 C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
|. |.||..||.+||++ +..||+|.++..
T Consensus 81 CN-----HaFH~hCisrWlkt--r~vCPLdn~eW~ 108 (114)
T KOG2930|consen 81 CN-----HAFHFHCISRWLKT--RNVCPLDNKEWV 108 (114)
T ss_pred cc-----hHHHHHHHHHHHhh--cCcCCCcCccee
Confidence 88 99999999999999 889999998764
No 40
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.98 E-value=0.0061 Score=45.51 Aligned_cols=40 Identities=25% Similarity=0.610 Sum_probs=30.9
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCc--ccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNK--TCDVC 302 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~--tCpIC 302 (508)
|.||++-+. ++..|+|+ |.|=+.||.+|.+..+.. .||+|
T Consensus 1 CpiC~~~~~---~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 789997775 58899999 999999999999876554 89988
No 41
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0055 Score=65.53 Aligned_cols=52 Identities=27% Similarity=0.623 Sum_probs=42.0
Q ss_pred CCCcceeccccccCCCceE--EecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMF--KLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l--~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.+..|.||+++++-.++-+ .+-|. |.|-..||++||-.+-...||.|+.+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 4568999999987555443 56698 9999999999997555679999998775
No 42
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=95.50 E-value=0.014 Score=47.91 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=36.6
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++-+. ++.+++|+ |.|-+.||++||.. ++.+||+|+..+.
T Consensus 3 ~~f~CpIt~~lM~---dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMR---DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-S---SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhh---CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 4568999986654 48889999 99999999999987 5789999998775
No 43
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.019 Score=60.46 Aligned_cols=48 Identities=31% Similarity=0.610 Sum_probs=37.5
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+.+..|-||+.+-. +..+|||. |. .=..|++.-.-. .+.|||||+.+.
T Consensus 288 ~~gkeCVIClse~r---dt~vLPCR-----HLCLCs~Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLPCR-----HLCLCSGCAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCc---ceEEecch-----hhehhHhHHHHHHHh--hcCCCccccchH
Confidence 55789999997643 58899988 54 556899887644 678999999885
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.74 E-value=0.011 Score=61.18 Aligned_cols=50 Identities=22% Similarity=0.565 Sum_probs=40.7
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh---------------------CCccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK---------------------GNKTCDVCKQDVQ 307 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k---------------------g~~tCpICr~~~~ 307 (508)
..|.|||-.|.+++...+.+|- ||+|..|+-+.|..- -...||||+..+.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4699999999888888899999 999999997765321 1348999999876
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.72 E-value=0.031 Score=42.34 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=23.0
Q ss_pred ceeccccccCCC-ceEEecCCCCCccceechhhHHHHHhhh--CCcccc
Q 010537 255 CRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIK--GNKTCD 300 (508)
Q Consensus 255 CrICl~e~ee~e-~~l~LPC~CKGsLh~fH~~Cl~kWL~~k--g~~tCp 300 (508)
|.||.+ +.+.+ .+.+|+|+ |.|=++||++|++.. +.-.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 889998 65433 56889999 999999999999864 344565
No 46
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.015 Score=54.38 Aligned_cols=45 Identities=31% Similarity=0.677 Sum_probs=39.5
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
+++..|.||++.+.+. ..++|. |.|=..|+..+.. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4678899999988754 889999 9999999999998 5789999995
No 47
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.11 E-value=0.026 Score=52.44 Aligned_cols=41 Identities=15% Similarity=0.421 Sum_probs=31.1
Q ss_pred CCcceeccccccCCCceEEecCCCCCcc-ceechhhHHHHHh
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGEL-ALAHKECAVKWFT 292 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsL-h~fH~~Cl~kWL~ 292 (508)
..+|+||++...+++..+.++|+..=.| |.||.+|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 4579999999887567788888743222 4599999999943
No 48
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.66 E-value=0.021 Score=61.01 Aligned_cols=52 Identities=25% Similarity=0.563 Sum_probs=43.3
Q ss_pred CCCCcceeccccccCCC-ceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e-~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
+-+-.|-.|-+.++..+ .+--|||+ |+||..|+...|..++.++||-|+.-.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 44678999988876544 45579999 999999999999999999999999433
No 49
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=92.96 E-value=0.046 Score=56.73 Aligned_cols=48 Identities=21% Similarity=0.422 Sum_probs=40.8
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
-..|+||.+-+. -..+.+|+ |-|-.-||...|.. ...||+|+.++...
T Consensus 25 ~lrC~IC~~~i~---ip~~TtCg-----HtFCslCIR~hL~~--qp~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRIS---IPCETTCG-----HTFCSLCIRRHLGT--QPFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhheee---cceecccc-----cchhHHHHHHHhcC--CCCCccccccHHhh
Confidence 467999987765 36678899 99999999999998 78899999998743
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.74 E-value=0.074 Score=41.52 Aligned_cols=46 Identities=24% Similarity=0.552 Sum_probs=22.4
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh--CCccccccccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--GNKTCDVCKQDVQ 307 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k--g~~tCpICr~~~~ 307 (508)
|.+|.+++. ..+.-..||.|. ++-|..=|.+.+ .+..||-||..|.
T Consensus 1 cp~C~e~~d-~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccc-cCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 678988873 334567899996 456776677665 3679999999873
No 51
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.70 E-value=0.097 Score=54.63 Aligned_cols=50 Identities=16% Similarity=0.393 Sum_probs=37.4
Q ss_pred CCcceeccccccCCCc--eEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEGGD--MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~--~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+..|.||..+.--... .++.+|+ |.|=..|++..|.. +...||+|+..++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccc
Confidence 4579999976332222 3445798 99999999997754 5779999998886
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=0.08 Score=55.97 Aligned_cols=55 Identities=24% Similarity=0.513 Sum_probs=41.3
Q ss_pred CCCCcceeccccccCCC----ceEEec-CCCCCccceechhhHHHHHhhhC-----Cccccccccccccc
Q 010537 250 EEEAVCRICLVELGEGG----DMFKLE-CSCKGELALAHKECAVKWFTIKG-----NKTCDVCKQDVQNL 309 (508)
Q Consensus 250 eee~~CrICl~e~ee~e----~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg-----~~tCpICr~~~~nv 309 (508)
..+.+|.||++...+-- ...+|| |. |.|=..|+.+|-..+. ++.||.||..-..+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45678999998765321 122556 88 9999999999986655 58999999887754
No 53
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.43 E-value=0.13 Score=62.29 Aligned_cols=54 Identities=24% Similarity=0.677 Sum_probs=42.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh--------CCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--------GNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k--------g~~tCpICr~~~~n 308 (508)
+.++.|-||+.|--.....+.|.|+ |.||-.|..+-|..+ |--.||+|+..+.-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 4568999998775545567889999 999999998766553 22489999998763
No 54
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=90.99 E-value=0.087 Score=55.69 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=40.2
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
--.|.||++=|. -+++.||+ |-|-.-||.+.|.. +..||.|..++..
T Consensus 23 lLRC~IC~eyf~---ip~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFN---IPMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhc---Cceecccc-----chHHHHHHHHHhcc--CCCCCceecccch
Confidence 457999996554 47889999 99999999999998 7889999998863
No 55
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.78 E-value=3 Score=48.40 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=55.7
Q ss_pred hhhhhhhhhHHHHHHHHHH----------HHhhhhh---hhHHHHHHHHHHHHHHHHHHHhhhh----------------
Q 010537 370 RALAISLPFSCVLGLLSSM----------IASTMVS---RSYIWAYASFQFAVVILFAHIFYSV---------------- 420 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~----------~as~mv~---r~y~W~ya~~qF~lvvlf~h~fy~~---------------- 420 (508)
..+..+++.+|..-||... .=.+|+. -||+|+|+.+-++|...|..+|-..
T Consensus 505 ~~lvfAl~lgW~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m 584 (782)
T KOG3676|consen 505 ALLVFALVLGWKNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPM 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence 4555666666665444432 1122222 2899999998888777776665322
Q ss_pred -----------------------------hcchhHHHHHHHHHhHHHHHHhhhHHH-----------HHH-HHHHhhhh
Q 010537 421 -----------------------------LNVNPILAVLLSSFTGFGIAISTNSLI-----------VEY-LRWRMSRQ 458 (508)
Q Consensus 421 -----------------------------~~~~~v~~illa~f~gfg~~m~~n~~~-----------~e~-~~wr~~~~ 458 (508)
.++..+..|+|.+|..|.-.|.+|-+| -|= .-||++|.
T Consensus 585 ~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A 663 (782)
T KOG3676|consen 585 CNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA 663 (782)
T ss_pred CChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH
Confidence 345578888999999887666666332 122 56888774
No 56
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=0.098 Score=50.43 Aligned_cols=29 Identities=38% Similarity=0.855 Sum_probs=24.5
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceech
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHK 284 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~ 284 (508)
+..+|.||+++++.++.+-.|||-|- +|+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCI-----YHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCI-----YHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEE-----eec
Confidence 34569999999999999999999974 775
No 57
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=90.45 E-value=0.14 Score=43.35 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=26.0
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHH
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAV 288 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~ 288 (508)
++..|.+|...+.. ......||+ |.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCC-----eEEeccccc
Confidence 34569999988875 456688998 999999975
No 58
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.25 Score=50.64 Aligned_cols=53 Identities=26% Similarity=0.468 Sum_probs=42.6
Q ss_pred CCCCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHH-HHhhhCCccccccccccc
Q 010537 246 EDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVK-WFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 246 e~~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~k-WL~~kg~~tCpICr~~~~ 307 (508)
..+++.+..|.||++..+ .+...||+ |.|=-.||.. |-+.+ ...||+||..+.
T Consensus 209 pfip~~d~kC~lC~e~~~---~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~ 262 (271)
T COG5574 209 PFIPLADYKCFLCLEEPE---VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVY 262 (271)
T ss_pred CcccccccceeeeecccC---Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhcc
Confidence 346666788999997643 57789999 9999999999 97663 556999999775
No 59
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=90.21 E-value=0.33 Score=46.51 Aligned_cols=55 Identities=25% Similarity=0.652 Sum_probs=37.7
Q ss_pred CCCcceeccccccCCCceEEecCC-----CCCc---cceechhhHHHHHhhhC---------------------------
Q 010537 251 EEAVCRICLVELGEGGDMFKLECS-----CKGE---LALAHKECAVKWFTIKG--------------------------- 295 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~-----CKGs---Lh~fH~~Cl~kWL~~kg--------------------------- 295 (508)
|+..|.|||+- ..+...|-|+ |+-. .-+-|..||++.-+..+
T Consensus 1 ed~~CpICme~---PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEH---PHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccC---CCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 46789999853 3456666665 2211 24579999999876432
Q ss_pred --Ccccccccccccc
Q 010537 296 --NKTCDVCKQDVQN 308 (508)
Q Consensus 296 --~~tCpICr~~~~n 308 (508)
.-.||+||.++..
T Consensus 78 ~~~L~CPLCRG~V~G 92 (162)
T PF07800_consen 78 QPELACPLCRGEVKG 92 (162)
T ss_pred cccccCccccCceec
Confidence 2379999999974
No 60
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=89.19 E-value=4.4 Score=39.90 Aligned_cols=35 Identities=11% Similarity=0.373 Sum_probs=22.3
Q ss_pred hhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhh
Q 010537 419 SVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQM 459 (508)
Q Consensus 419 ~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~ 459 (508)
..+..+.+++. ++|+.+.|-+ .|.+...|+.+++.
T Consensus 151 ~~~~~~~~~sf----l~g~~~~~wl--~y~q~iywekkn~~ 185 (205)
T PF07895_consen 151 SFISFQSLLSF----LSGLLLLMWL--VYFQIIYWEKKNHK 185 (205)
T ss_pred HHhhHHHHHHH----HHHHHHHHHH--HHHHHheeeccCce
Confidence 33444555554 6677776444 46788999998754
No 61
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.09 E-value=0.26 Score=53.22 Aligned_cols=49 Identities=22% Similarity=0.625 Sum_probs=41.3
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
..|.||-+. +.++.+-||+ |+.-..|+..|-...+..+||.||.+++..
T Consensus 370 eLCKICaen---dKdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 579999754 3357788999 999999999999887788999999999854
No 62
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.32 Score=53.70 Aligned_cols=49 Identities=18% Similarity=0.589 Sum_probs=38.9
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh---CCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK---GNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k---g~~tCpICr~~~~n 308 (508)
+..|.||+++.. -+..+-|+ |+|=-.||.+.+... +-..||+|+..+..
T Consensus 186 ~~~CPICL~~~~---~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC---cccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 788999997644 34455599 999999999988653 55799999998874
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.34 E-value=0.7 Score=49.29 Aligned_cols=58 Identities=22% Similarity=0.487 Sum_probs=41.5
Q ss_pred CCCCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccccc
Q 010537 246 EDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311 (508)
Q Consensus 246 e~~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp~ 311 (508)
++.+|++..|-||-.... -...+||+ |..-.-|..+-...=..+.|++||.+...|-.
T Consensus 55 ddtDEen~~C~ICA~~~T---Ys~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 55 DDTDEENMNCQICAGSTT---YSARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred cccccccceeEEecCCce---EEEeccCC-----chHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 344567788999976543 34589999 77777888776544446789999999876543
No 64
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=88.20 E-value=0.21 Score=37.68 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=16.5
Q ss_pred ceechhhHHHHHhhhCCcccccc
Q 010537 280 ALAHKECAVKWFTIKGNKTCDVC 302 (508)
Q Consensus 280 h~fH~~Cl~kWL~~kg~~tCpIC 302 (508)
-.+|..|+.++++.+.+..||.|
T Consensus 21 ~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 21 VRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -EE-HHHHHHHTTT-SS-B-TTT
T ss_pred chHHHHHHHHHHhcCCCCCCcCC
Confidence 56999999999999877789988
No 65
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.72 E-value=0.38 Score=50.20 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=37.2
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.++|.||+.... .+..|+|. |.|-..||+-=.+. +..+|++|+..+.
T Consensus 7 ~~eC~IC~nt~n---~Pv~l~C~-----HkFCyiCiKGsy~n-dk~~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGN---CPVNLYCF-----HKFCYICIKGSYKN-DKKTCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCC---cCcccccc-----chhhhhhhcchhhc-CCCCCceecCCCC
Confidence 356999997643 45789999 99999999875554 4678999999987
No 66
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=83.96 E-value=0.52 Score=54.79 Aligned_cols=60 Identities=25% Similarity=0.552 Sum_probs=44.2
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh-----CCcccccccccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-----GNKTCDVCKQDVQNLPVTLL 314 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k-----g~~tCpICr~~~~nvp~~l~ 314 (508)
..-+|.||.+.+..-..++ +|+.-.|.||..||.+|-+.. ....||-|+.....+|.+.+
T Consensus 190 ~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y~ 254 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTYL 254 (950)
T ss_pred CceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcccc
Confidence 3468999998876433333 344555999999999998654 23489999999988887644
No 67
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=81.51 E-value=0.58 Score=52.15 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=39.9
Q ss_pred CCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh---hhCCccccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT---IKGNKTCDVCKQDVQ 307 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~---~kg~~tCpICr~~~~ 307 (508)
..++.+|.+|++.- ++.++..|+ |.|-+-|+..+.. ...+.+||+|...+.
T Consensus 533 nk~~~~C~lc~d~a---ed~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPA---EDYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChh---hhhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 34678899999764 457788899 9999999988864 334579999997664
No 68
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.37 E-value=3.4 Score=42.47 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCCcceeccccccCCCceE-EecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMF-KLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l-~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
.--.|.||.+.+...-... .-||+ |.|-.+|+++.++. ...||+|......
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg-----~Vv~~ecvEklir~--D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSG-----HVVTKECVEKLIRK--DMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCC-----cEeeHHHHHHhccc--cccccCCCCcCcc
Confidence 4578999999887543333 45688 99999999999876 8899999998864
No 69
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=80.67 E-value=1.4 Score=47.00 Aligned_cols=36 Identities=31% Similarity=0.804 Sum_probs=26.8
Q ss_pred cCCCCCccceechhhHHHHHhhh-----------CCcccccccccccccc
Q 010537 272 ECSCKGELALAHKECAVKWFTIK-----------GNKTCDVCKQDVQNLP 310 (508)
Q Consensus 272 PC~CKGsLh~fH~~Cl~kWL~~k-----------g~~tCpICr~~~~nvp 310 (508)
+|-|+ -.-=.+|+-+||..+ |+..||.||..|--+.
T Consensus 308 ~C~CR---PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 308 QCYCR---PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccccc---chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 36665 445679999999766 4569999999986543
No 70
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=1.4 Score=44.71 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=39.9
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh------CCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK------GNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k------g~~tCpICr~~~~ 307 (508)
-...|+.|-..++++ +...|-|- |.||-+|+..|-..- ..-.||-|..++.
T Consensus 49 Y~pNC~LC~t~La~g-dt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASG-DTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccC-cceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 345699998888754 57789999 999999999997432 1238999999875
No 71
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=79.92 E-value=1.2 Score=35.52 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=29.3
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV 301 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpI 301 (508)
...|.|.+..+.+ ...-..|+ |.|-++.|.+||+.++...||+
T Consensus 11 ~~~CPiT~~~~~~--PV~s~~C~-----H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFED--PVKSKKCG-----HTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SS--EEEESSS-------EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhC--CcCcCCCC-----CeecHHHHHHHHHhcCCCCCCC
Confidence 4679999988763 33445788 9999999999997777889998
No 72
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=78.74 E-value=8.8 Score=33.77 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhh
Q 010537 396 RSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTN 444 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n 444 (508)
++.+.---..-|+++.++.-..+-.+++++++|+++|...|||+.....
T Consensus 37 ~ELlFF~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~~~~~ 85 (90)
T PF11674_consen 37 KELLFFANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAITQLVR 85 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444566666555556677899999999999999999865544
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=78.57 E-value=1 Score=44.85 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=38.6
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
...|.||-.+|+ .+++..|+ |+|-..|+.+=++. ...|-+|+....
T Consensus 196 PF~C~iCKkdy~---spvvt~CG-----H~FC~~Cai~~y~k--g~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYE---SPVVTECG-----HSFCSLCAIRKYQK--GDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhcc---chhhhhcc-----hhHHHHHHHHHhcc--CCcceecchhhc
Confidence 368999999886 36788899 99999999887765 789999998764
No 74
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=78.25 E-value=8.9 Score=31.83 Aligned_cols=61 Identities=8% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhH--HHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhh
Q 010537 399 IWAYASFQFAVVILFAHIFYSVLNVNPI--LAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSL 462 (508)
Q Consensus 399 ~W~ya~~qF~lvvlf~h~fy~~~~~~~v--~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~ 462 (508)
+|.|...=+++++.++-++| ++.+... ..++++...++-++|..++++ +.+||.+-.++-.
T Consensus 1 v~~Ytl~Rl~lfv~~~~vi~-~v~~~~~~~~p~~~~~l~A~vis~~lS~~l--l~~~R~~~~~~ia 63 (69)
T PF14012_consen 1 VLRYTLARLGLFVVLFAVIW-LVGLLIGVEVPLLVAALLALVISMPLSYVL--LRRLRDRASADIA 63 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 47788888888888888777 4444433 445566666677777777444 6788877655443
No 75
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.79 E-value=1.4 Score=48.94 Aligned_cols=54 Identities=28% Similarity=0.688 Sum_probs=40.5
Q ss_pred cccCCCCCCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 241 TEEAGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 241 ~e~~~e~~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
.+.+.++..+.++.|+||..+. ..++.+|. |..|+.+|+.. ...||+|+....+
T Consensus 468 s~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~l~~~~~~--~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 468 SEATPSQLREPNDVCAICYQEM----SARITPCS--------HALCLRKWLYV--QEVCPLCHTYMKE 521 (543)
T ss_pred CCCChhhhhcccCcchHHHHHH----Hhcccccc--------chhHHHhhhhh--ccccCCCchhhhc
Confidence 3344455667788999998775 23444554 99999999988 6789999988863
No 76
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=77.63 E-value=1.5 Score=44.91 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=30.5
Q ss_pred EecCCCCCcc-ceechhhHHHHHhhhCCccccccccccc
Q 010537 270 KLECSCKGEL-ALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 270 ~LPC~CKGsL-h~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
...|-|.+.- .|||..|+--=..-+|+..|+-|+....
T Consensus 232 Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 232 MIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred ccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 4568888776 9999999876666678889999997653
No 77
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.42 E-value=0.4 Score=50.99 Aligned_cols=49 Identities=29% Similarity=0.576 Sum_probs=38.3
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.+..|.||+.=+.. ......|. |.|-.+||.+=|+. +++.||-||+.+.
T Consensus 42 ~~v~c~icl~llk~--tmttkeCl-----hrfc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKK--TMTTKECL-----HRFCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHh--hcccHHHH-----HHHHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 45789999865541 23355688 99999999999987 6889999999773
No 78
>COG2246 Predicted membrane protein [Function unknown]
Probab=76.93 E-value=39 Score=31.38 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhh
Q 010537 407 FAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMS 456 (508)
Q Consensus 407 F~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~ 456 (508)
.+-+.+...++|-+.......+.+++.+.|.++++.+|+++-...-||.+
T Consensus 89 ~lg~~~~~~~~~~l~~~~~~~~~~~a~~i~~~~~~i~nfi~s~~v~~~~~ 138 (139)
T COG2246 89 LLGLAVLLLVLYILTLGLLLVAYLIANLIGIVAAFIINFLLSKRVFWRVR 138 (139)
T ss_pred HHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecc
Confidence 33344444445555554555558899999999999999999999888864
No 79
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.13 E-value=0.86 Score=37.00 Aligned_cols=49 Identities=16% Similarity=0.487 Sum_probs=31.0
Q ss_pred CCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCccccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
.++|.||.+.-. +...--|. |. .-.+|-.+-.+. .+.+||+||..++.+
T Consensus 7 ~dECTICye~pv---dsVlYtCG-----HMCmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 7 SDECTICYEHPV---DSVLYTCG-----HMCMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred ccceeeeccCcc---hHHHHHcc-----hHHhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 367999986532 22233476 43 345776554443 477999999988654
No 80
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=74.34 E-value=27 Score=30.37 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 010537 399 IWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYL 451 (508)
Q Consensus 399 ~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~ 451 (508)
+|.++. -+.++.++..++...++....+...+.-+..+.++|.+|+++....
T Consensus 55 mw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~n~~y~~~~ 106 (108)
T PF10947_consen 55 MWLYAI-IFLALLVALAIILILLGFPPGLGLGLSLAISLFFGMFANYWYYRHL 106 (108)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377774 3444444444566666666666666666677888889998765543
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=74.32 E-value=2.2 Score=45.54 Aligned_cols=53 Identities=21% Similarity=0.561 Sum_probs=34.6
Q ss_pred CCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh--CCcccccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK--GNKTCDVCKQDVQN 308 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k--g~~tCpICr~~~~n 308 (508)
++|++.|..|++++.-.+ .-..||.|. . +-|---|-.++ -+..||-||..|..
T Consensus 11 edeed~cplcie~mditd-knf~pc~cg---y---~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 11 EDEEDYCPLCIEPMDITD-KNFFPCPCG---Y---QICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccccCccccccccccc-CCcccCCcc---c---HHHHHHHHHHHhhccCCChHhhhhccc
Confidence 346677999998876433 335678875 2 33444454333 35689999999873
No 82
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=74.22 E-value=10 Score=32.46 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=35.4
Q ss_pred HHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHH
Q 010537 410 VILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVE 449 (508)
Q Consensus 410 vvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e 449 (508)
+-+++|+.-++|.-+|-+++.|+-+.|.|+++.+.|-++.
T Consensus 21 lG~wfhiVarlVy~~PemA~~laeiiav~lVl~GgYRild 60 (80)
T PRK13727 21 LGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLD 60 (80)
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3567899999999999999999999999999999876664
No 83
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=73.20 E-value=3.2 Score=33.35 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=33.7
Q ss_pred CCCcceeccccccCCCceEEec-CCCCCccceechhhHHHHHhhhCCccccc--ccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDV--CKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpI--Cr~~~ 306 (508)
++..|.+|-..+.+++++.+-| |+ .-+|+.|.++ ...|-+ |+..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~Cg-----apyHR~C~~~------~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECG-----APYHRDCWEK------AGGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCC-----CcccHHHHhh------CCceEeccCCCCc
Confidence 4567999999998778888888 88 9999999432 345666 66544
No 84
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.93 E-value=0.38 Score=51.80 Aligned_cols=48 Identities=17% Similarity=0.499 Sum_probs=40.2
Q ss_pred CcceeccccccCC-CceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 253 AVCRICLVELGEG-GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 253 ~~CrICl~e~ee~-e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
..|.||.+.+.+. ++.-.+.|+ |..|.+||.+||.. ...|+-|+.++.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g-----~~~~~~kL~k~L~~--~~kl~~~~rel~ 245 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCG-----HIYHHGKLSKWLAT--KRKLPSCRRELP 245 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhc-----ccchhhHHHHHHHH--HHHhHHHHhhhh
Confidence 4699999888754 455678899 99999999999998 678999998876
No 85
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=72.87 E-value=14 Score=31.60 Aligned_cols=45 Identities=13% Similarity=0.402 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHH
Q 010537 399 IWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVE 449 (508)
Q Consensus 399 ~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e 449 (508)
+|+++ +-+++|+.-++|.-+|-+++.|+-+.|.|+++.+.|-++.
T Consensus 16 mwv~~------lG~wfhiVarlVy~~P~mA~~laeliav~lVl~G~YRiLd 60 (80)
T TIGR02741 16 LWVFS------LGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLD 60 (80)
T ss_pred chhhH------hhHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46654 3567899999999999999999999999999999876654
No 86
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=72.04 E-value=40 Score=35.39 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHH-HhhhhhhhHH
Q 010537 354 AYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSMI-ASTMVSRSYI 399 (508)
Q Consensus 354 ayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~~-as~mv~r~y~ 399 (508)
..+.+|..+...+.|..+.-++-|.|.-.++++++. |+.+-.+-.+
T Consensus 151 sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v~~sv~LaSRl~~~~~v 197 (292)
T KOG3059|consen 151 SVWLLLGNLFFHDYGISTIRVSGPLSLNAAVSASVLLASRLEKSIHV 197 (292)
T ss_pred HHHHHHHHHhcccccccccccCCcchHHHHHHHHHHHHHhcCCchHH
Confidence 446678888999999999999999998888888775 5555444443
No 87
>PLN02189 cellulose synthase
Probab=71.91 E-value=2.9 Score=50.08 Aligned_cols=52 Identities=31% Similarity=0.740 Sum_probs=36.0
Q ss_pred CCcceecccccc--CCCceEEecCC-CCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELG--EGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~e--e~e~~l~LPC~-CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
..+|.||-++.+ .++++. ..|+ |. --+=+.|.+ .=+..|+..||.||..|+.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cye-yer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCYE-YERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEE-EeeccCC---Cccccchhh-hhhhcCCccCcccCCchhh
Confidence 458999998865 344444 4455 32 336678984 4455589999999999983
No 88
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=70.47 E-value=37 Score=33.01 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHhhhh------hhhHHHHHHHHHHHHHH
Q 010537 376 LPFSCVLGLLSSMIASTMV------SRSYIWAYASFQFAVVI 411 (508)
Q Consensus 376 lPFs~vlgll~S~~as~mv------~r~y~W~ya~~qF~lvv 411 (508)
+.++++.|+++-+..-.|- .|.-.|-|..+-.+.++
T Consensus 117 i~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~ 158 (206)
T PF06570_consen 117 ILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMV 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Confidence 5566666666655433332 24455666554443333
No 89
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=69.52 E-value=81 Score=31.89 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=45.0
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhhhhhhh---HHHH-HHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHh
Q 010537 367 LGARALAISLPFSCVLGLLSSMIASTMVSRS---YIWA-YASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 367 lg~~AlaislPFs~vlgll~S~~as~mv~r~---y~W~-ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~ 442 (508)
....|+++-..|+.+.|+..+-....-+... =+|. ++.--..+..+-++.++...-+...-+.|+.+..|..+++.
T Consensus 82 s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~Dls~l~~~l~~aligLiiasv 161 (233)
T COG0670 82 SSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASL 161 (233)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776666554322222111 0222 12222334455556667777778888888888888888776
Q ss_pred hh
Q 010537 443 TN 444 (508)
Q Consensus 443 ~n 444 (508)
.|
T Consensus 162 vn 163 (233)
T COG0670 162 VN 163 (233)
T ss_pred HH
Confidence 66
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.89 E-value=1.8 Score=49.76 Aligned_cols=46 Identities=17% Similarity=0.536 Sum_probs=37.2
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
-.|..|..... +..+.-|. |.|=..|+..-+.++ .+.||.|...|-
T Consensus 644 LkCs~Cn~R~K---d~vI~kC~-----H~FC~~Cvq~r~etR-qRKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWK---DAVITKCG-----HVFCEECVQTRYETR-QRKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchh---hHHHHhcc-----hHHHHHHHHHHHHHh-cCCCCCCCCCCC
Confidence 56888874433 34556699 999999999999986 789999999884
No 91
>COG3256 NorB Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]
Probab=67.68 E-value=53 Score=37.95 Aligned_cols=111 Identities=27% Similarity=0.343 Sum_probs=64.2
Q ss_pred chhhhHHHHHHHHHHHHHhhh----cccchhhhhhhhhHHHHHHHHHHHHhhh-----------------hhhhHHHHHH
Q 010537 345 PVLIMVSMLAYFCFLEQLLVS----DLGARALAISLPFSCVLGLLSSMIASTM-----------------VSRSYIWAYA 403 (508)
Q Consensus 345 p~LViismLayFcFLeqLLv~----~lg~~AlaislPFs~vlgll~S~~as~m-----------------v~r~y~W~ya 403 (508)
.+|+..++++.-+|+-=.+.. ++++.+|++++-|-++-.+.....++.. +.|.++|..-
T Consensus 307 vvWIa~~wlaa~lyllP~~~~pk~~~l~s~~L~~al~~v~~gs~~g~~~gyl~~l~~~~~F~~G~QG~~~~~~g~lwqll 386 (717)
T COG3256 307 VVWIATGWLAAGLYLLPELGGPKFQELGSPKLLIALFFVVVGSLAGAWLGYLQLLPAPFWFWFGHQGYEYLGRGRLWQLL 386 (717)
T ss_pred HHHHHHHHHHHHHHhhhhhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHhccCCccceeecccCCccccchHHHHHH
Confidence 356666666665554444443 7888899888877655333333333332 2577889876
Q ss_pred HHHHHHHHHHHHHhhhh--hc----chhHHHHHHHHHhHHHHHHhh--------hHHHHHHHHHHh
Q 010537 404 SFQFAVVILFAHIFYSV--LN----VNPILAVLLSSFTGFGIAIST--------NSLIVEYLRWRM 455 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~--~~----~~~v~~illa~f~gfg~~m~~--------n~~~~e~~~wr~ 455 (508)
.+.-.++.++...-.++ .+ --.++.+++.+-+|+|+-+.. |.-+.||.+|=-
T Consensus 387 l~~~ll~~v~Lmfra~~t~~~~~grkt~~i~~~~~~~~gig~Ff~~~~~~~~~~n~t~dey~rWwv 452 (717)
T COG3256 387 LIKGLLVWVALMFRANVTATKLKGRKTTLIAILLLSLTGIGLFFLFGLYNPEWTNLAVDEYWRWWV 452 (717)
T ss_pred HHHHHHHHHHHHHHhcchhhhcCCcchhHHHHHHHHHHHHHHHHhhhhccCCCCCchHHHHHHHHH
Confidence 55444444333322221 11 234667777777777665543 667889999953
No 92
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=66.97 E-value=5.2 Score=43.44 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHh
Q 010537 376 LPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 376 lPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~ 455 (508)
+|.+.+.+.-...-.+.|..=.|.|-+...=-|+||+++-+|.-+.++-++.-.+++.=.--+-..=.-.++.++..|=.
T Consensus 273 lPI~i~~~~G~~~~dTI~sGV~~L~~~Gs~~vA~VVFiASilVP~~Ki~~la~Ll~~~~fk~~~~~k~~~~lyr~v~~IG 352 (418)
T COG2995 273 LPIMITYLLGARQEDTILSGVISLWSSGSYPVAAVVFLASILVPLLKIIALAWLLLSAHFKRQRGLKTRMLLYRIVEFVG 352 (418)
T ss_pred cceEEEecCCCccccHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHc
Confidence 67776666555555666777788999988888999999999998888765544444332112222223345555555555
Q ss_pred hh
Q 010537 456 SR 457 (508)
Q Consensus 456 ~~ 457 (508)
||
T Consensus 353 RW 354 (418)
T COG2995 353 RW 354 (418)
T ss_pred ch
Confidence 55
No 93
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=66.65 E-value=22 Score=33.81 Aligned_cols=27 Identities=22% Similarity=0.583 Sum_probs=20.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Q 010537 371 ALAISLPFSCVLGLLSSMIASTMVSRSYIWAY 402 (508)
Q Consensus 371 AlaislPFs~vlgll~S~~as~mv~r~y~W~y 402 (508)
++.+++|++++.|+++++.+. -++|++
T Consensus 75 s~ilaiP~A~~~Gi~FA~lsf-----~hIW~v 101 (148)
T PF01146_consen 75 SLILAIPLAFLWGILFACLSF-----LHIWCV 101 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 456778999999999998844 456876
No 94
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.42 E-value=6.8 Score=45.70 Aligned_cols=41 Identities=27% Similarity=0.754 Sum_probs=28.5
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV 301 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpI 301 (508)
..|.||+.... +...+-.-|. |..|..|+..||++ ...||-
T Consensus 1029 ~~C~~C~l~V~-gss~~Cg~C~-----Hv~H~sc~~eWf~~--gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-GSSNFCGTCG-----HVGHTSCMMEWFRT--GDVCPS 1069 (1081)
T ss_pred eeeeeEeeEee-ccchhhcccc-----ccccHHHHHHHHhc--CCcCCC
Confidence 55888876543 2223334466 99999999999998 447773
No 95
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.97 E-value=4.3 Score=40.02 Aligned_cols=52 Identities=21% Similarity=0.559 Sum_probs=33.1
Q ss_pred CCCCCcceeccccccCCCce-----EEecCCCCCccceechhhHHHHHhhhCC---------cccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDM-----FKLECSCKGELALAHKECAVKWFTIKGN---------KTCDVCKQDV 306 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~-----l~LPC~CKGsLh~fH~~Cl~kWL~~kg~---------~tCpICr~~~ 306 (508)
+++...|.||.. |.-++.. -...|+ +-||+-|+..||+.--+ ..||.|...+
T Consensus 162 dd~~~~cgicya-yqldGTipDqtCdN~qCg-----kpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 162 DDELGACGICYA-YQLDGTIPDQTCDNIQCG-----KPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred chhhhcccceee-eecCCccccccccccccC-----CcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 345567999963 3222211 134566 88999999999963211 2799998765
No 96
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.00 E-value=4.9 Score=42.95 Aligned_cols=46 Identities=22% Similarity=0.529 Sum_probs=30.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
...+.|-||+++.. +...+||+ |..= |..-- + ....||+|++..+.
T Consensus 303 ~~p~lcVVcl~e~~---~~~fvpcG-----h~cc--ct~cs-~--~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPK---SAVFVPCG-----HVCC--CTLCS-K--HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCcc---ceeeecCC-----cEEE--chHHH-h--hCCCCchhHHHHHH
Confidence 34578999998754 36789999 5522 32222 2 25679999998753
No 97
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.39 E-value=3.6 Score=48.22 Aligned_cols=45 Identities=18% Similarity=0.503 Sum_probs=32.5
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
..|..|-..++- ...-.-|. |.||++|+. .+...||-|+-+++++
T Consensus 841 skCs~C~~~Ldl--P~VhF~Cg-----HsyHqhC~e-----~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHFLCG-----HSYHQHCLE-----DKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCcccc--ceeeeecc-----cHHHHHhhc-----cCcccCCccchhhhhh
Confidence 479999655431 12234488 999999988 4477999999987643
No 98
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=61.86 E-value=46 Score=36.44 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHH-HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHHHhhhhhcc
Q 010537 346 VLIMVSMLAYFC-FLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASF-QFAVVILFAHIFYSVLNV 423 (508)
Q Consensus 346 ~LViismLayFc-FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~-qF~lvvlf~h~fy~~~~~ 423 (508)
++.++...+||| +--.....+.+..|+ +-+||+.-+|++ ....++| |.+-.+ ++++.+...+- +..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~-l~~p~glrl~~~------l~~~~~~-wp~~~~~~~~~~~~l~~~----~~~ 77 (495)
T PRK11644 10 ACFFIFSAAWFCLWSISLHLVERPELAV-LLFPFGLRLGLM------LQCPRGY-WPVLLGAEWLLIYWLAQA----VGL 77 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHccHHHHHHHH------HhCCccc-chHHHHHHHHHHHHHHhh----hcc
Confidence 445556667788 444444566677775 479999888844 3445677 865332 33333322221 112
Q ss_pred hhHHHHHHHHHhHHHHHHhh
Q 010537 424 NPILAVLLSSFTGFGIAIST 443 (508)
Q Consensus 424 ~~v~~illa~f~gfg~~m~~ 443 (508)
...+-++++++..+.+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ 97 (495)
T PRK11644 78 PHWLLLLIGSLLTLLPVALA 97 (495)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 22445555555555554443
No 99
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=59.40 E-value=4.3 Score=42.07 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=36.3
Q ss_pred CcceeccccccCCC-ceEEecCCCCCccceechhhHHHHHhhhCCcccccccc
Q 010537 253 AVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 253 ~~CrICl~e~ee~e-~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
..|.||.+.+.... .+..++|+ |..|..|+..-... +-+||+|..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcc-----cchHHHHHHHHhcc--CCCCCcccc
Confidence 34999988765443 45689999 99999998887766 489999999
No 100
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=59.04 E-value=2.1 Score=40.05 Aligned_cols=34 Identities=26% Similarity=0.653 Sum_probs=28.9
Q ss_pred eEEecCCCCCccceechhhHHHHHhhhCCcccccccc
Q 010537 268 MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 268 ~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
.+.|+|+|. .|+|.+|-...|.++|...|--.+.
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~E 65 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSRE 65 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCcCc
Confidence 446999998 9999999999999999888876554
No 101
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=58.97 E-value=56 Score=32.15 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=42.4
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 010537 344 MPVLIMVSMLAYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNV 423 (508)
Q Consensus 344 ~p~LViismLayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~ 423 (508)
+..|++...++|+++ +.+||++.++. ++++|..-.. .++..|.||.-. .--
T Consensus 76 ~llw~~~aL~~YW~L--------------------SllLgl~~~lL------gR~fW~lkv~--lfl~~f~~Il~~-~~~ 126 (177)
T PF14965_consen 76 VLLWGAVALLAYWFL--------------------SLLLGLLFALL------GRVFWLLKVV--LFLLSFVYILQK-YEG 126 (177)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHc-CCC
Confidence 456788888888843 45566666665 6888985442 223334444333 445
Q ss_pred hhHHHHHHHHHhHHHHHHhh
Q 010537 424 NPILAVLLSSFTGFGIAIST 443 (508)
Q Consensus 424 ~~v~~illa~f~gfg~~m~~ 443 (508)
.|.-++++-++....+.|++
T Consensus 127 ~~e~a~l~L~~lv~~~~l~g 146 (177)
T PF14965_consen 127 PPERAALLLCLLVLVCFLTG 146 (177)
T ss_pred chHHHHHHHHHHHHHHHHcc
Confidence 66666666666655555544
No 102
>PRK01766 multidrug efflux protein; Reviewed
Probab=58.53 E-value=96 Score=32.73 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHh
Q 010537 408 AVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 408 ~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~ 455 (508)
++.+.+++++..+..+ -+..+.++.+.+..+....+..+....+||.
T Consensus 400 ~~~i~~~~~l~~~~~~-G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 400 VLGLPLGYILALTDPM-GPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHhccCC-CceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333233 3566777777777777777766666666665
No 103
>PLN02436 cellulose synthase A
Probab=58.35 E-value=7.5 Score=46.86 Aligned_cols=51 Identities=27% Similarity=0.669 Sum_probs=35.1
Q ss_pred CCcceecccccc--CCCceEEecCC-CCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELG--EGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~e--e~e~~l~LPC~-CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
..+|.||-++.+ .++++. .-|+ |. --+=+.|.+ .-+..|+..||.||..|+
T Consensus 36 ~~iCqICGD~Vg~t~dGe~F-VACn~C~---fpvCr~Cye-yer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPF-VACNECA---FPVCRPCYE-YERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEE-EeeccCC---Cccccchhh-hhhhcCCccCcccCCchh
Confidence 458999988864 334444 3344 32 346678984 445558999999999998
No 104
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=57.89 E-value=86 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 010537 425 PILAVLLSSFTGFGIAISTNSLIVEYLRWR 454 (508)
Q Consensus 425 ~v~~illa~f~gfg~~m~~n~~~~e~~~wr 454 (508)
+..-+++|++++|.++...|..+..++|-+
T Consensus 66 ~~~ri~~aS~~a~lisq~~d~~if~~lk~~ 95 (145)
T PF02592_consen 66 PTPRIALASLIAFLISQLLDVYIFSKLKRK 95 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366789999999999999998887766544
No 105
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=57.31 E-value=9 Score=46.23 Aligned_cols=51 Identities=27% Similarity=0.587 Sum_probs=34.6
Q ss_pred CCCcceecccccc--CCCceEE--ecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~--LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
...+|.||-++.+ .++++.+ -.|. --+=+.|.+ .=+..|+..||.||..|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchh
Confidence 3458999988764 3344442 3353 336678874 344458999999999998
No 106
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=57.21 E-value=1.2e+02 Score=34.42 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhh
Q 010537 425 PILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQ 458 (508)
Q Consensus 425 ~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~ 458 (508)
+++.-++++|++.++.+-.-....--..||.+|-
T Consensus 387 ~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~Wv 420 (518)
T KOG2568|consen 387 TLAFSVVASFAFILVETIFYSIMSCNKDWKERWV 420 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 4444456666666666655554455567887773
No 107
>PRK07668 hypothetical protein; Validated
Probab=56.29 E-value=91 Score=32.17 Aligned_cols=106 Identities=12% Similarity=0.264 Sum_probs=58.4
Q ss_pred eeeccchhhhHHHHHHHHHHHHHhhhccc----chhhhhhhhhHHHHHHHHHHHHhh-------hhhhhHHHHHHHHHH-
Q 010537 340 VWQDMPVLIMVSMLAYFCFLEQLLVSDLG----ARALAISLPFSCVLGLLSSMIAST-------MVSRSYIWAYASFQF- 407 (508)
Q Consensus 340 ~W~d~p~LViismLayFcFLeqLLv~~lg----~~AlaislPFs~vlgll~S~~as~-------mv~r~y~W~ya~~qF- 407 (508)
-|.......++++++|+.+..-+.+...+ +....+-.|+.+++++..-+.... +-.+.|+-.|.....
T Consensus 73 ~~~~~l~~~ii~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~~~~~l~i~~~~~~~r~~~fk~~~~~~~~i~~~~~~~~p 152 (254)
T PRK07668 73 ENIKLILFIIIGILSFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLLRMASFKSKLTEKWFLIIYLVILIP 152 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeehHHhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 34444455677778877765555444112 223344455555555555432222 223445555544333
Q ss_pred -HHHHHHHHHh----hhhhcchhHHHHHHHHHhHHHHHHhhhHH
Q 010537 408 -AVVILFAHIF----YSVLNVNPILAVLLSSFTGFGIAISTNSL 446 (508)
Q Consensus 408 -~lvvlf~h~f----y~~~~~~~v~~illa~f~gfg~~m~~n~~ 446 (508)
++.++...++ |.+++++.+-+.+|++.. |-++|++|..
T Consensus 153 ~~l~i~i~~l~k~yp~~~~~ls~~qs~il~~~~-~i~~~~~~~~ 195 (254)
T PRK07668 153 MLLIVAIMFLNKWYGTPMLQFTQMQSYILAGLI-FLITVIINIY 195 (254)
T ss_pred HHHHHHHHHHHhhcCceEEEecchHHHHHHHHH-HHHHHHHHHH
Confidence 3333333332 456889999999999887 7777887743
No 108
>PLN03223 Polycystin cation channel protein; Provisional
Probab=56.16 E-value=95 Score=39.07 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHhhhhhcchhHHHHHHHH
Q 010537 415 HIFYSVLNVNPILAVLLSS 433 (508)
Q Consensus 415 h~fy~~~~~~~v~~illa~ 433 (508)
.=|.++++.++-+.+|..|
T Consensus 1304 LKfLRLLRFNPrL~vLt~T 1322 (1634)
T PLN03223 1304 GRILKLMDFQPRLGVITRT 1322 (1634)
T ss_pred HHHHHHhccChhHHHHHHH
Confidence 3466677778777766443
No 109
>PRK10726 hypothetical protein; Provisional
Probab=55.96 E-value=93 Score=28.28 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHh
Q 010537 397 SYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFT 435 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~ 435 (508)
-|-|-|...=.=+.|+...++-.+++.+-+++++.-+.+
T Consensus 52 LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~~s~l~t~l~ 90 (105)
T PRK10726 52 LYTWPFFLALMPVSVLVGIALHSLLRGKLLYSILFTLLT 90 (105)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 578888777777788888888888888888888655443
No 110
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional
Probab=55.71 E-value=1.7e+02 Score=30.16 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHhHHHHHH
Q 010537 422 NVNPILAVLLSSFTGFGIAI 441 (508)
Q Consensus 422 ~~~~v~~illa~f~gfg~~m 441 (508)
.+.+.++++++...|..+++
T Consensus 84 g~~~~~a~~~a~~~~~l~G~ 103 (317)
T PRK11618 84 GWSPLLAFPLVLVMGAAFGA 103 (317)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443
No 111
>PF04641 Rtf2: Rtf2 RING-finger
Probab=55.28 E-value=15 Score=37.09 Aligned_cols=53 Identities=15% Similarity=0.344 Sum_probs=39.3
Q ss_pred CCCCcceeccccccCCCce-EEecCCCCCccceechhhHHHHHhhhCCcccccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDM-FKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~-l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp 310 (508)
+....|.|+..++...... ...+|+ |.|-..|++.- + ....||+|...|....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG-----~V~s~~alke~-k--~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCG-----CVFSEKALKEL-K--KSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCC-----CEeeHHHHHhh-c--ccccccccCCccccCC
Confidence 4567899998888433233 356899 78999999887 2 3567999999998543
No 112
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=54.66 E-value=6.5 Score=45.06 Aligned_cols=33 Identities=27% Similarity=0.588 Sum_probs=25.2
Q ss_pred EEecCCCCCccceechhhHHHHHhhh---------CCccccccc
Q 010537 269 FKLECSCKGELALAHKECAVKWFTIK---------GNKTCDVCK 303 (508)
Q Consensus 269 l~LPC~CKGsLh~fH~~Cl~kWL~~k---------g~~tCpICr 303 (508)
+.+-|+|+| .++|..|+.-|+... +.+.|+.|+
T Consensus 34 ~m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 34 RLLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred cchhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 345588887 889999999999765 234777777
No 113
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=54.43 E-value=66 Score=28.26 Aligned_cols=11 Identities=18% Similarity=0.791 Sum_probs=6.4
Q ss_pred hhhhHHHHHHH
Q 010537 346 VLIMVSMLAYF 356 (508)
Q Consensus 346 ~LViismLayF 356 (508)
++|+++.+.||
T Consensus 7 li~~~s~~~f~ 17 (237)
T PF02932_consen 7 LIVVLSWLSFW 17 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhheE
Confidence 45566666655
No 114
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.19 E-value=5 Score=43.55 Aligned_cols=51 Identities=22% Similarity=0.466 Sum_probs=40.7
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp 310 (508)
..+..|-||..-+. ....+||+ |-|=..||++=+.. +..||+|+..+.-.+
T Consensus 82 ~sef~c~vc~~~l~---~pv~tpcg-----hs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---PPVVTPCG-----HSFCLECLDRSLDQ--ETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcC---CCcccccc-----ccccHHHHHHHhcc--CCCCcccccccccch
Confidence 46778999976654 46778999 99999999996554 889999999997543
No 115
>PLN02195 cellulose synthase A
Probab=53.69 E-value=13 Score=44.58 Aligned_cols=51 Identities=29% Similarity=0.572 Sum_probs=34.4
Q ss_pred CCCcceecccccc--CCCceEE--ecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~--LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
...+|.||-++.+ .++++.+ -.|. --+=+.|.+ .=+..|+..||.||..|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCccc
Confidence 3458999987654 3334442 2354 446678873 444558999999999998
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.60 E-value=7 Score=41.16 Aligned_cols=35 Identities=23% Similarity=0.655 Sum_probs=26.4
Q ss_pred CCCCCccceechhhHHHHHhhh-----------CCcccccccccccccc
Q 010537 273 CSCKGELALAHKECAVKWFTIK-----------GNKTCDVCKQDVQNLP 310 (508)
Q Consensus 273 C~CKGsLh~fH~~Cl~kWL~~k-----------g~~tCpICr~~~~nvp 310 (508)
|-|+ -.--++|+-+||..+ |+.+||.||..|.-..
T Consensus 323 c~cr---p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 323 CICR---PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccc---cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 4455 556789999999644 6679999999886443
No 117
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=53.33 E-value=50 Score=34.09 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHH
Q 010537 393 MVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAI 441 (508)
Q Consensus 393 mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m 441 (508)
|..|+ +|.|..+.|.++..+ ++.++++| ++.|+-+|+
T Consensus 201 m~~k~-~~~ff~lGF~l~ayl--------~~~~~i~i---aiig~~iA~ 237 (267)
T PRK09757 201 MFKAQ-YIPYLIAGFLFVCYI--------QVSNLLPV---AVLGAGFAV 237 (267)
T ss_pred Hhhcc-hHHHHHHHHHHHHHh--------CCccHHHH---HHHHHHHHH
Confidence 44455 589988888776653 44445555 445544444
No 118
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=53.25 E-value=1.6e+02 Score=30.02 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHH
Q 010537 349 MVSMLAYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILA 428 (508)
Q Consensus 349 iismLayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~ 428 (508)
++.++..|.++..+.-.+-|..++ +++-|++++=++.- .-..+-...-+|+....-..+.++...+.+-+ +. -.++
T Consensus 3 l~~l~~if~~lll~igg~~G~~sl-lsL~~n~~~i~~~~-i~~~~~G~~~~~v~~i~~~~~~~vtl~lv~G~-n~-kt~~ 78 (244)
T PF07907_consen 3 LVILLIIFILLLLLIGGKKGLRSL-LSLIFNFLIIFFVL-IPLILNGYNPILVTIIAAILITAVTLFLVNGF-NK-KTLA 78 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHhcCc-hH-HHHH
Confidence 334455566777777788888776 56666554222211 22222223444554332222222222211111 22 2335
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 429 VLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 429 illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
-+++|..|..+++....+..++.+-
T Consensus 79 A~~~tl~~~~~~~~l~~~~~~~~~~ 103 (244)
T PF07907_consen 79 AFIGTLIGVLLAGILALLVMKLAHL 103 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5667777777776666555555443
No 119
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=53.14 E-value=1.3e+02 Score=25.78 Aligned_cols=42 Identities=14% Similarity=0.338 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHH
Q 010537 405 FQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEY 450 (508)
Q Consensus 405 ~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~ 450 (508)
+.+++-.+...++-.++++++.+ +.+.+.++++..|+++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~----a~~~~~~i~~~~~f~~~k~ 114 (117)
T PF04138_consen 73 LGLLLNTLILWLLVDWLGIPYLI----AKLIAIGIVFVVNFLLSKF 114 (117)
T ss_pred HHHHHHHHHHHHHHHHhCchHHH----HHHHHHHHHHHHHHHHHhe
Confidence 34444444555555666766665 5555677777788877654
No 120
>COG4129 Predicted membrane protein [Function unknown]
Probab=52.73 E-value=55 Score=34.83 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchh--------HHH--------------HHH
Q 010537 374 ISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNP--------ILA--------------VLL 431 (508)
Q Consensus 374 islPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~--------v~~--------------ill 431 (508)
..--+||+||++.++....+.. -..|+|+. +++++..+-..+++++ ++. =++
T Consensus 58 ~~r~~g~~iG~~~a~l~~~l~g-~~~~~~~v-----~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~~~~r~l 131 (332)
T COG4129 58 LQRLLGNALGAILAVLFFLLFG-QNPIAFGV-----VLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFNRFL 131 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-ccHHHHHH-----HHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhHHHHHHH
Confidence 3445678888887777555555 33355544 3333333333344433 111 134
Q ss_pred HHHhHHHHHHhhhHHH
Q 010537 432 SSFTGFGIAISTNSLI 447 (508)
Q Consensus 432 a~f~gfg~~m~~n~~~ 447 (508)
-.|.|.|+|.++|.++
T Consensus 132 ~~~vG~~~a~lvn~~~ 147 (332)
T COG4129 132 LVFVGVGVAFLVNLVM 147 (332)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 4678999999999654
No 121
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=52.58 E-value=14 Score=31.87 Aligned_cols=53 Identities=28% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCCcceecccccc--CCCceEE--ecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~--LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
...+|.||-++.+ +++++++ ..|. --+=+.|.+-=.+. |+..||.|+..|+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 4568999987764 3445553 3355 55778888766554 789999999999744
No 122
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.28 E-value=7.4 Score=38.56 Aligned_cols=39 Identities=23% Similarity=0.560 Sum_probs=27.6
Q ss_pred cceeccccccCCCceEEecCCCCCccceech-hhHHHHHhhhCCcccccccccc
Q 010537 254 VCRICLVELGEGGDMFKLECSCKGELALAHK-ECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~-~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
.|+.|.+. +-..+.+||. |+.|= .|-.. -.+||+|+...
T Consensus 160 ~Cr~C~~~---~~~VlllPCr-----Hl~lC~~C~~~------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 160 SCRKCGER---EATVLLLPCR-----HLCLCGICDES------LRICPICRSPK 199 (207)
T ss_pred cceecCcC---CceEEeeccc-----ceEeccccccc------CccCCCCcChh
Confidence 39999754 3358899999 77663 66443 34699999755
No 123
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=52.25 E-value=56 Score=32.87 Aligned_cols=72 Identities=18% Similarity=0.518 Sum_probs=38.0
Q ss_pred hhhhhhHHHHHHHHHHH------HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh-----hcchhHHHHHHHHHhHHHHHH
Q 010537 373 AISLPFSCVLGLLSSMI------ASTMVSRSYIWAYASFQFAVVILFAHIFYSV-----LNVNPILAVLLSSFTGFGIAI 441 (508)
Q Consensus 373 aislPFs~vlgll~S~~------as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~-----~~~~~v~~illa~f~gfg~~m 441 (508)
++++.+++++|++.++. ......+-|+|++--.=+.+.+++. ||-. +++.+ +.+++.|++ +
T Consensus 30 ~~~~~~g~vlG~~la~~r~s~~~~l~~~~~~Yv~~~RgtPlLvqlf~~--yfg~lp~~g~~~~~----~~aaiial~--l 101 (222)
T COG0765 30 LLSIVLGLVLGLLLALMRLSGNKPLRWLARAYVEIFRGTPLLVQLFFI--YFGLLPLLGIELDP----FTAAVIALS--L 101 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHhCccHHHHHHHH--HHHhHHHhccCCCH----HHHHHHHHH--H
Confidence 34556677777766653 2223446688887543333222222 2321 34444 455555555 4
Q ss_pred hhhHHHHHHHH
Q 010537 442 STNSLIVEYLR 452 (508)
Q Consensus 442 ~~n~~~~e~~~ 452 (508)
...+.+.|+.|
T Consensus 102 ~~~AY~aEi~R 112 (222)
T COG0765 102 NSGAYLAEIVR 112 (222)
T ss_pred HHHHHHHHHHH
Confidence 55567778765
No 124
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=52.11 E-value=1.8e+02 Score=27.44 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=26.8
Q ss_pred hcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 010537 365 SDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYS 419 (508)
Q Consensus 365 ~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~ 419 (508)
...|.....++.|.+....++.+..+..++ +.++.++++++.+.++.
T Consensus 115 ~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~g 161 (286)
T COG0842 115 REFGTLERLLVSPVSRLFILLGKIVPYLVV--------ASLIAGLVLLVIAFLLG 161 (286)
T ss_pred HhhCcHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHc
Confidence 567777777888887655555555543333 23344444444444443
No 125
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.13 E-value=17 Score=38.01 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=36.9
Q ss_pred CCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
.+.+|.+|-+. ...+.. .+|. |.+=+.|+..=+...-.-+||.|+..+..
T Consensus 238 ~~~~C~~Cg~~---PtiP~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEP---PTIPHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCC---CCCCeeecccc-----ceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 45679999644 234554 4488 99999999887765445699999998853
No 126
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=50.72 E-value=1.6e+02 Score=33.73 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=7.1
Q ss_pred HHhHHHHHHhhhHH
Q 010537 433 SFTGFGIAISTNSL 446 (508)
Q Consensus 433 ~f~gfg~~m~~n~~ 446 (508)
.-+++|++|+.-.+
T Consensus 152 ~a~~lgl~lsafwL 165 (616)
T PF10131_consen 152 VAIVLGLLLSAFWL 165 (616)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556665554433
No 127
>PLN02400 cellulose synthase
Probab=50.47 E-value=11 Score=45.67 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=34.7
Q ss_pred CCCcceecccccc--CCCceEE--ecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~--LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
.+.+|.||-++.+ +++++.+ ..|. --+=+.|.+ .=+.-|+..||.||..|+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYE-YERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYE-YERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhh-eecccCCccCcccCCcccc
Confidence 3468999988764 3444553 3354 335567863 3344489999999999984
No 128
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.35 E-value=8 Score=40.62 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=39.0
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
...|-||...|. .+++..|. |+|-..|+.+=++. ...|.||.+...+
T Consensus 241 Pf~c~icr~~f~---~pVvt~c~-----h~fc~~ca~~~~qk--~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKYFY---RPVVTKCG-----HYFCEVCALKPYQK--GEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccccc---cchhhcCC-----ceeehhhhcccccc--CCcceeccccccc
Confidence 356999998876 36778888 99999999988876 7899999998754
No 129
>COG3671 Predicted membrane protein [Function unknown]
Probab=49.71 E-value=1.2e+02 Score=28.36 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHhhh
Q 010537 430 LLSSFTGFGIAISTN 444 (508)
Q Consensus 430 lla~f~gfg~~m~~n 444 (508)
+|.|+.|+||+|.+.
T Consensus 81 ~Llt~lgiGv~i~~A 95 (125)
T COG3671 81 LLLTFLGIGVVILVA 95 (125)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566899999988765
No 130
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=49.48 E-value=1.1e+02 Score=38.67 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=10.0
Q ss_pred echhhHHHHHhhh
Q 010537 282 AHKECAVKWFTIK 294 (508)
Q Consensus 282 fH~~Cl~kWL~~k 294 (508)
-|..=+..||+-.
T Consensus 2143 rHnkeLq~~Lk~~ 2155 (2706)
T KOG3533|consen 2143 RHNKELQIWLKPS 2155 (2706)
T ss_pred HhhHHHHHHhCCc
Confidence 5778889999754
No 131
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=49.21 E-value=1.9e+02 Score=29.24 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 010537 402 YASFQFAVVILFA 414 (508)
Q Consensus 402 ya~~qF~lvvlf~ 414 (508)
|+.+.|+.+++.+
T Consensus 47 ~~~i~~~~Ll~~v 59 (284)
T PF12805_consen 47 AATIGFATLLVAV 59 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555444433
No 132
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.12 E-value=11 Score=40.62 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=40.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
.|+..|.||... .-.....||+ |.--+.||.+-+.. ++.|=.||..+..
T Consensus 420 sEd~lCpICyA~---pi~Avf~PC~-----H~SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG---PINAVFAPCS-----HRSCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc---cchhhccCCC-----CchHHHHHHHHHhc--CCeeeEecceeee
Confidence 467889999754 2246688999 88889999999988 7889999998874
No 133
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=48.85 E-value=72 Score=29.07 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=32.9
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHH
Q 010537 373 AISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLL 431 (508)
Q Consensus 373 aislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~ill 431 (508)
|+++|| .++|- -++.---|-|-+...=.=+.|+....+-.+++-+-+++++.
T Consensus 38 AlaiPf-l~YG~------nTLfFfLYTWPFFLALmPvsVl~Gi~l~~ll~g~l~~s~~~ 89 (107)
T PF12084_consen 38 ALAIPF-LVYGS------NTLFFFLYTWPFFLALMPVSVLIGIALSSLLRGKLLWSLLA 89 (107)
T ss_pred HHhhHH-hhhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeehhh
Confidence 566777 55552 22222357787766666667777777777777777766643
No 134
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=48.81 E-value=1.3e+02 Score=37.15 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=5.6
Q ss_pred hhhHHHHHh
Q 010537 284 KECAVKWFT 292 (508)
Q Consensus 284 ~~Cl~kWL~ 292 (508)
..-+..|+.
T Consensus 860 ~~yL~~wl~ 868 (1145)
T TIGR00918 860 YIYLSAWVS 868 (1145)
T ss_pred HHHHHHHHc
Confidence 345667875
No 135
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.29 E-value=40 Score=26.67 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=10.9
Q ss_pred HHHHhHHHHHHhhhHHHHHHHHHHh
Q 010537 431 LSSFTGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 431 la~f~gfg~~m~~n~~~~e~~~wr~ 455 (508)
+...+++|+.+++-..+..+.++|.
T Consensus 24 il~~f~~G~llg~l~~~~~~~~~r~ 48 (68)
T PF06305_consen 24 ILIAFLLGALLGWLLSLPSRLRLRR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 136
>PRK11098 microcin B17 transporter; Reviewed
Probab=48.21 E-value=48 Score=36.28 Aligned_cols=99 Identities=15% Similarity=0.311 Sum_probs=57.2
Q ss_pred eeeccchhhhHHHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 010537 340 VWQDMPVLIMVSMLAYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYS 419 (508)
Q Consensus 340 ~W~d~p~LViismLayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~ 419 (508)
|+-...+|.++.++.||..-++.+...+|..+-+-.+|.+ ++...+..++|.|.- |.+.+.....|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (409)
T PRK11098 12 FFLSAFVWALIAVIFWYAGGGDWLARLTGLAAASGQLPIG----------AARFWSPDFLWFYAY--YLVCVGLFAGFWF 79 (409)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhhhcCCCccccCCCcc----------hhHhcCchHHHHHHH--HHHHHHHHhhhhc
Confidence 4445567788888888888888777777754333345633 555566788898876 3334444445555
Q ss_pred hhcchhHHH--------HHHHHHhHHHHHHhhhHHHHHH
Q 010537 420 VLNVNPILA--------VLLSSFTGFGIAISTNSLIVEY 450 (508)
Q Consensus 420 ~~~~~~v~~--------illa~f~gfg~~m~~n~~~~e~ 450 (508)
+..=....+ ||+.+.+..++....|.....|
T Consensus 80 ~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~F 118 (409)
T PRK11098 80 IYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPF 118 (409)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 554433332 3333444455555555444443
No 137
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=12 Score=41.01 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhC------Ccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKG------NKTCDVCKQDV 306 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg------~~tCpICr~~~ 306 (508)
--.|-||+++.........+||+ |+|-+.|+...+.+.. .-.||-|+..=
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~-----Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCS-----HVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred cccceeeehhhcCcceeeecccc-----hHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 46799999886544567789999 9999999999996531 23787766544
No 138
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=47.31 E-value=1.1e+02 Score=35.84 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=6.9
Q ss_pred HHHHHHHHhHHHHHH
Q 010537 427 LAVLLSSFTGFGIAI 441 (508)
Q Consensus 427 ~~illa~f~gfg~~m 441 (508)
+.+++..+.||+.+|
T Consensus 324 ~~~~~~~~~g~~~~~ 338 (1146)
T PRK08633 324 SVLVLFFLFGFSAGL 338 (1146)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555444
No 139
>PRK05415 hypothetical protein; Provisional
Probab=47.16 E-value=90 Score=33.51 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=32.0
Q ss_pred hhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhhhcc
Q 010537 418 YSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSLHQQI 466 (508)
Q Consensus 418 y~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~~~~ 466 (508)
|..+--++.|..+.+++.++.+.+.+..++.|+.+.++-+..+..|++.
T Consensus 90 ~~~~~~~~wlg~~~~~~~~~~~~~~~~~~~rE~~~l~rL~~~~~~r~~a 138 (341)
T PRK05415 90 RDAFQRSDWLGLGAAVVGALIVLAGLGIVVREWRRLRRLRQRAHLRDEA 138 (341)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345666666666777777777777888998887766555555543
No 140
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=46.90 E-value=2.6e+02 Score=26.47 Aligned_cols=9 Identities=56% Similarity=1.339 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 010537 446 LIVEYLRWR 454 (508)
Q Consensus 446 ~~~e~~~wr 454 (508)
+.+.|.+|-
T Consensus 167 ~~~~y~kw~ 175 (181)
T PF08006_consen 167 LTVRYLKWN 175 (181)
T ss_pred HHHHHHHHH
Confidence 445566664
No 141
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=9.2 Score=45.17 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=26.6
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHH
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWF 291 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL 291 (508)
.+.|.+|...+-. ..-.+.||+ |.||.+|+.+=.
T Consensus 817 ~d~C~~C~~~ll~-~pF~vf~Cg-----H~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLI-KPFYVFPCG-----HCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhc-Ccceeeecc-----chHHHHHHHHHH
Confidence 5679999776652 345688999 999999998764
No 142
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=46.63 E-value=68 Score=32.69 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHH
Q 010537 398 YIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGI 439 (508)
Q Consensus 398 y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~ 439 (508)
+.++..++-++++..+.+.+...+..+-.+..+++......+
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ii 343 (354)
T PF03739_consen 302 ISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPNII 343 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 334444444444444444444444434333333444333333
No 143
>COG4485 Predicted membrane protein [Function unknown]
Probab=46.34 E-value=5.8e+02 Score=30.53 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=10.3
Q ss_pred HhhhhhhhHHHHHHH
Q 010537 390 ASTMVSRSYIWAYAS 404 (508)
Q Consensus 390 as~mv~r~y~W~ya~ 404 (508)
+=.|.-+||.|++|.
T Consensus 346 sPnmflhRya~ifs~ 360 (858)
T COG4485 346 SPNMFLHRYAYIFSL 360 (858)
T ss_pred CchHHHHHHHHHHHH
Confidence 445777888888744
No 144
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.14 E-value=19 Score=43.41 Aligned_cols=52 Identities=29% Similarity=0.623 Sum_probs=35.1
Q ss_pred CCCcceecccccc--CCCceEE--ecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~--LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
...+|.||-++.+ .++++.+ -.|. --+-+.|.+ .=+..|+..||.||..|+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cye-ye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCYE-YERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchhh
Confidence 4578999987764 3344442 2353 336678883 4444589999999999983
No 145
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=45.98 E-value=6.9 Score=41.52 Aligned_cols=50 Identities=24% Similarity=0.438 Sum_probs=38.6
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp 310 (508)
...|++|- .|-- +...+..|- |-|=+.||.+.|.. +++||.|.-.+...+
T Consensus 15 ~itC~LC~-GYli-DATTI~eCL-----HTFCkSCivk~l~~--~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCG-GYLI-DATTITECL-----HTFCKSCIVKYLEE--SKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhcc-ceee-cchhHHHHH-----HHHHHHHHHHHHHH--hccCCccceeccCcc
Confidence 46799995 3332 235567788 88999999999999 899999998887543
No 146
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=44.85 E-value=1.4e+02 Score=32.55 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhh
Q 010537 422 NVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSL 462 (508)
Q Consensus 422 ~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~ 462 (508)
++....++.|+-+..+.++|.+==++.-|...|+++.....
T Consensus 300 ~~~~~i~~~la~i~~i~l~~~vvR~vR~~~~hr~~~~~y~~ 340 (374)
T PF01528_consen 300 NLHTGIAINLAVIAIICLIMMVVRLVRAFLYHRRRSTRYYP 340 (374)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 55677789999999999999888788888887775444433
No 147
>PF15345 TMEM51: Transmembrane protein 51
Probab=44.65 E-value=16 Score=37.10 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=21.1
Q ss_pred HhHHHHHHhhhHHHHHHHHHHhhhhhhh
Q 010537 434 FTGFGIAISTNSLIVEYLRWRMSRQMQS 461 (508)
Q Consensus 434 f~gfg~~m~~n~~~~e~~~wr~~~~~~~ 461 (508)
.+|-||+|.+=+|.+-+++-|+++....
T Consensus 64 LVG~Gv~LLLLSICL~IR~KRr~rq~~e 91 (233)
T PF15345_consen 64 LVGSGVALLLLSICLSIRDKRRRRQGEE 91 (233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4577999999999988887776654444
No 148
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=44.64 E-value=12 Score=30.26 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=32.4
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+..|-.|... +....++||. |++=..|.+-| +-+-||+|+..+.
T Consensus 7 ~~~~~~~~~~---~~~~~~~pCg-----H~I~~~~f~~~----rYngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFV---GTKGTVLPCG-----HLICDNCFPGE----RYNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEcccc---cccccccccc-----ceeeccccChh----hccCCCCCCCccc
Confidence 3457777533 3456689999 99999996655 3567999999885
No 149
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=44.49 E-value=1e+02 Score=37.61 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=10.6
Q ss_pred cchhhhHHHHHHHHHHHHHhhh
Q 010537 344 MPVLIMVSMLAYFCFLEQLLVS 365 (508)
Q Consensus 344 ~p~LViismLayFcFLeqLLv~ 365 (508)
+.|++-+.++..|.|+...+..
T Consensus 936 ltFi~SIiwIsi~SyilV~~at 957 (1096)
T TIGR00927 936 ITFLGSIMWIAMFSYLMVWWAH 957 (1096)
T ss_pred ehHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444443
No 150
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=44.46 E-value=1.7e+02 Score=32.00 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 010537 381 VLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 381 vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~ 452 (508)
=+|+|.|+.....++=+.+|+.+.+|++.++++. +-.|.+.-|-+-+++ +.-|..+.++-+.|+.-..
T Consensus 291 Q~GVFISRSS~~~~rir~lwils~LQ~~nl~~~~--l~s~~~fipsi~ivf--~lif~eGLlGGa~YVNtF~ 358 (402)
T PF02487_consen 291 QLGVFISRSSLPFFRIRRLWILSLLQVINLVFLL--LQSWYRFIPSIWIVF--VLIFYEGLLGGASYVNTFY 358 (402)
T ss_pred HHHHhhhhcceeeeehhhHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHH--HHHHHHHHhhhHHHHHHHH
Confidence 3888888877777777889999999998777642 333444333222333 2344455555556666554
No 151
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.68 E-value=14 Score=39.21 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=55.7
Q ss_pred cccccccccccccccccc---ccCCCCeeEEeecCCCccccccccCCCCCCCCcccccCCCCCCCCCCcceeccccccCC
Q 010537 189 MTRSFSVPVNIKVRSLRR---TESGGGLIRVISVSTRSAAVERISVNDDPATDIATEEAGEDIPEEEAVCRICLVELGEG 265 (508)
Q Consensus 189 i~RS~SvP~n~~~~s~rr---~dS~gGl~RVvP~sP~~~~~~~~~~~d~~~~~~~~e~~~e~~~eee~~CrICl~e~ee~ 265 (508)
|-|++..|+-..+....+ +..+||+.-++|....=+.-....++-....+..=+....++ ...|..|++-+-
T Consensus 211 IPk~FLk~ve~p~e~~~a~imit~EG~yVv~qpdvqsWe~Yq~r~~a~~~~~Dqv~k~~~~~i---~LkCplc~~Llr-- 285 (427)
T COG5222 211 IPKDFLKPVEGPNEPSNAAIMITPEGGYVVAQPDVQSWEKYQQRTKAVAEIPDQVYKMQPPNI---SLKCPLCHCLLR-- 285 (427)
T ss_pred CCHHhcccccCCCcccccceEEcCCCCeEEeccchHHHHHHHHHHHhhhhCchhhhccCCCCc---cccCcchhhhhh--
Confidence 445666666554433333 456677777776554311110000000000000001112222 367999986543
Q ss_pred CceEEecCCCCCccceechhhHHHHHhhhCCccccccccc
Q 010537 266 GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305 (508)
Q Consensus 266 e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~ 305 (508)
+..+.||. . |.|-.+||..-|..+ ...||.|...
T Consensus 286 -np~kT~cC-~---~~fc~eci~~al~ds-Df~CpnC~rk 319 (427)
T COG5222 286 -NPMKTPCC-G---HTFCDECIGTALLDS-DFKCPNCSRK 319 (427)
T ss_pred -CcccCccc-c---chHHHHHHhhhhhhc-cccCCCcccc
Confidence 34455632 2 899999999887664 6799999883
No 152
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=43.07 E-value=3.7e+02 Score=27.23 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHhh
Q 010537 429 VLLSSFTGFGIAIST 443 (508)
Q Consensus 429 illa~f~gfg~~m~~ 443 (508)
++...+.|+|.++..
T Consensus 303 ~~~~~~~~~g~~~~~ 317 (394)
T PRK11652 303 LVPAALFFFGAGMLF 317 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455666665543
No 153
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=42.24 E-value=1e+02 Score=33.64 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhcccchhhhhhhhhHH------HHHHHHHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHhhhhhcch
Q 010537 352 MLAYFCFLEQLLVSDLGARALAISLPFSC------VLGLLSSMIASTMVSRSY-IWAYASFQFAVVILFAHIFYSVLNVN 424 (508)
Q Consensus 352 mLayFcFLeqLLv~~lg~~AlaislPFs~------vlgll~S~~as~mv~r~y-~W~ya~~qF~lvvlf~h~fy~~~~~~ 424 (508)
+-+|+=|+.--|....|..+--+.+-|++ ++..+.++.+.++..|++ +|..+.+-..+..+|..+|.-+++.|
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n 102 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSN 102 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333355555555556655544444443 233334445666665665 57777766666777777888888988
Q ss_pred hHHHHHHHH-HhHHHH
Q 010537 425 PILAVLLSS-FTGFGI 439 (508)
Q Consensus 425 ~v~~illa~-f~gfg~ 439 (508)
-.+..++.+ +.|++.
T Consensus 103 ~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 103 FWLGAIIGGIYLGLVF 118 (412)
T ss_dssp -HHHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 777666543 334443
No 154
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=42.02 E-value=3.5e+02 Score=26.65 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 427 LAVLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 427 ~~illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
.-|++|++.+|.++...|..+..++|-
T Consensus 102 ~ri~~aS~~Aylisq~~dv~if~~lK~ 128 (202)
T TIGR00697 102 PRIALASLVAYIVSQLLDVKVFTFLKK 128 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999777665543
No 155
>PLN03211 ABC transporter G-25; Provisional
Probab=41.95 E-value=85 Score=36.03 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=20.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhhh
Q 010537 371 ALAISLPFSCVLGLLSSMIASTMVSR 396 (508)
Q Consensus 371 AlaislPFs~vlgll~S~~as~mv~r 396 (508)
-+..-+||.++..++.+++.+-|+.-
T Consensus 486 ~~l~elP~~~~~~~if~~i~Y~m~Gl 511 (659)
T PLN03211 486 RIVGDLPMELILPTIFLTVTYWMAGL 511 (659)
T ss_pred HHHHHHHHHHHHHHHHHhheeEcCCC
Confidence 34455899999999999888888763
No 156
>PF15038 Jiraiya: Jiraiya
Probab=41.69 E-value=2.6e+02 Score=27.60 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 412 LFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 412 lf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
+.+...|.++...-.-++.-+.+.|-|+..++-.+.-.+.+|++-.
T Consensus 121 l~~l~ly~~l~f~~~~~~~~s~ilG~g~vfl~~~~vh~l~~w~r~~ 166 (175)
T PF15038_consen 121 LAALILYMLLQFHSEPGIATSIILGSGAVFLGAAMVHNLYRWQRET 166 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556666666667777888999999999999999999998643
No 157
>PHA03096 p28-like protein; Provisional
Probab=41.63 E-value=15 Score=38.23 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=32.7
Q ss_pred CcceeccccccCC---C-ceEEec-CCCCCccceechhhHHHHHhhhC-Ccccccccccc
Q 010537 253 AVCRICLVELGEG---G-DMFKLE-CSCKGELALAHKECAVKWFTIKG-NKTCDVCKQDV 306 (508)
Q Consensus 253 ~~CrICl~e~ee~---e-~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg-~~tCpICr~~~ 306 (508)
.+|.||++...+. + .-..|+ |. |.|=..|+..|...+. +.+|+.|+..-
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~-----h~fc~~ci~~wr~~~~~~e~~~~c~~~~ 233 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIK-----HEFNIFCIKIWMTESLYKETEPENRRLN 233 (284)
T ss_pred hhcccchhhhhhhccccccccccccCC-----cHHHHHHHHHHHHhhhhcccCccccchh
Confidence 6799999876432 1 122455 77 9999999999987642 34566665433
No 158
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.44 E-value=1.5e+02 Score=37.37 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=22.3
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHh
Q 010537 412 LFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 412 lf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~ 455 (508)
++..+++.+++.--.+- +|..+..+|+.+.++.-++.++++-.
T Consensus 149 lLs~lL~~LfG~vGa~L-ILLlllLIGLiLlTglSwlsIleriG 191 (1355)
T PRK10263 149 LLSTTLQPLLHSSGGTI-ALLCVWAAGLTLFTGWSWVTIAEKLG 191 (1355)
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33555666666433332 33345556666666655556555543
No 159
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=40.77 E-value=38 Score=37.98 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHH
Q 010537 404 SFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGI 439 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~ 439 (508)
.+-|++|++|..+||++..+-|.+++++..+..+|+
T Consensus 350 l~g~~~V~vfm~~~Yr~~Gvia~ial~~n~~lil~v 385 (506)
T COG0342 350 LIGLALVAVFMLLYYRLAGVIAAIALGLNGVLILAV 385 (506)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777776666655555544
No 160
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=40.60 E-value=3.1e+02 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhHHHHHHh
Q 010537 424 NPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 424 ~~v~~illa~f~gfg~~m~ 442 (508)
+.+..++...+.|||.++.
T Consensus 298 ~~~~~~~~~~~~g~~~~~~ 316 (352)
T PF07690_consen 298 SPVWLIIALFLIGFGFGIV 316 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4555555556666665554
No 161
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.53 E-value=91 Score=35.00 Aligned_cols=64 Identities=27% Similarity=0.259 Sum_probs=35.4
Q ss_pred hhhhhhhhhHHHHHHHHHH-----------HHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHH
Q 010537 370 RALAISLPFSCVLGLLSSM-----------IASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFG 438 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~-----------~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg 438 (508)
.||++++--|++=|+++.+ .|..+-..+|+|++ -|+|+++... --+.++.=|.+.+.|++
T Consensus 108 ~ALa~Aa~~Sf~gg~vs~~~l~~~Ap~la~~AL~FGpaEYFal~---vfgl~~~~~~------~~~s~lK~l~~~~lGl~ 178 (504)
T COG3333 108 VALAIAAIASFIGGLVSTLGLLFLAPPLAKLALKFGPAEYFALM---VFGLVSVAGL------SGGSLLKGLASAALGLL 178 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHH---HHHHHHHHHH------hcCcHHHHHHHHHHHHH
Confidence 3555555555554444443 24445557886653 3444433322 23567777788888877
Q ss_pred HHHh
Q 010537 439 IAIS 442 (508)
Q Consensus 439 ~~m~ 442 (508)
+++.
T Consensus 179 La~V 182 (504)
T COG3333 179 LATV 182 (504)
T ss_pred HHHc
Confidence 7654
No 162
>COG4129 Predicted membrane protein [Function unknown]
Probab=40.19 E-value=29 Score=36.82 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.3
Q ss_pred cccccc
Q 010537 301 VCKQDV 306 (508)
Q Consensus 301 ICr~~~ 306 (508)
.++.+.
T Consensus 29 ~l~~~~ 34 (332)
T COG4129 29 LLGLPQ 34 (332)
T ss_pred HhCCCc
Confidence 333333
No 163
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=39.54 E-value=88 Score=30.06 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=35.7
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcch----hHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 390 ASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVN----PILAVLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 390 as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~----~v~~illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
+-.|++ |-.|. .-+=.++-+.++.+||.++..+ |-..++|.++.-||++.+|-+.=+==-.|
T Consensus 58 s~RM~r-Rm~~~-~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSW 123 (153)
T PF11947_consen 58 SNRMLR-RMAVF-VGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASW 123 (153)
T ss_pred HHHHHH-HHHHH-hchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 444553 33333 2333444444555566665554 56778899999999998876543333334
No 164
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=39.48 E-value=61 Score=35.05 Aligned_cols=12 Identities=17% Similarity=-0.036 Sum_probs=6.4
Q ss_pred echhhHHHHHhh
Q 010537 282 AHKECAVKWFTI 293 (508)
Q Consensus 282 fH~~Cl~kWL~~ 293 (508)
|..+=.++|-+.
T Consensus 160 ~~~~Ga~~f~~~ 171 (397)
T TIGR01129 160 LDSEGARIFGDF 171 (397)
T ss_pred EChhHHHHHHHH
Confidence 444556666543
No 165
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=39.40 E-value=1e+02 Score=37.99 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 010537 400 WAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYL 451 (508)
Q Consensus 400 W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~ 451 (508)
|+-.++-..++.+++...+-=+.|++|-.|.|.-.+||||.-|.. +...|.
T Consensus 994 iv~l~v~~i~v~v~G~M~lwgI~LnaVS~vnLimsIGisVefsaH-I~~~F~ 1044 (1145)
T TIGR00918 994 LIVLVLALMTVELFGMMGLLGIKLSAIPVVILIASVGIGVEFTVH-IALGFL 1044 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhhhhhHH-HHHHHH
Confidence 444444455566666666666889999999999999999999988 555555
No 166
>COG4331 Predicted membrane protein [Function unknown]
Probab=39.28 E-value=1.1e+02 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.415 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHh
Q 010537 393 MVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 393 mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~ 455 (508)
|.-|+-.|+|...-+.|+.+.++=.|++..-..+.-++|.. |-+.|.+- .+.||++-|.
T Consensus 100 ~LwkkklwaYPlsi~vl~lFI~YQlyr~~~t~Si~livlti---~Dv~viiL-tllEYR~lk~ 158 (167)
T COG4331 100 LLWKKKLWAYPLSILVLVLFILYQLYRFFNTGSISLIVLTI---FDVFVIIL-TLLEYRLLKA 158 (167)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHhcccHHHHHHHH---HHHHHHHH-HHHHHHHHHH
Confidence 33467779999877777766666666665555555555544 44444433 5679988774
No 167
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=38.61 E-value=81 Score=37.63 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhcchhHHHHHHHHH
Q 010537 409 VVILFAHIFYSVLNVNPILAVLLSSF 434 (508)
Q Consensus 409 lvvlf~h~fy~~~~~~~v~~illa~f 434 (508)
+||+|..++=++++.-+|++++|-+|
T Consensus 651 fvvM~~~I~ktflk~f~vfs~lliaF 676 (929)
T KOG0510|consen 651 FVVMLEVILKTFLKSFMVFSILLIAF 676 (929)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777778888888888888877654
No 168
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=38.60 E-value=1.8e+02 Score=31.20 Aligned_cols=45 Identities=27% Similarity=0.504 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHH-HhhhhhcchhHHHHHHHHHhHHHHHHhhhHHH
Q 010537 403 ASFQFAVVILFAH-IFYSVLNVNPILAVLLSSFTGFGIAISTNSLI 447 (508)
Q Consensus 403 a~~qF~lvvlf~h-~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~ 447 (508)
-.+|.++.++|+. +.|++++-+-==+|+-+++.|||++++-|++.
T Consensus 312 l~~q~i~~~~f~~fv~fr~~gkdydaavm~~G~~G~glGatp~a~a 357 (368)
T PF03616_consen 312 LAVQTILMVLFAYFVTFRVMGKDYDAAVMSAGFCGFGLGATPNAMA 357 (368)
T ss_pred HHHHHHHHHHHHHHHhhhhhCCChhHHHHhhhhhccCCCccHHHHH
Confidence 4567777666654 35777877766677778999999999999764
No 169
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=38.52 E-value=2.8e+02 Score=32.61 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----hhhhhcchhHHHHHHHHHhHHHHHHhhh
Q 010537 396 RSYIWAYASFQFAVVILFAHI----FYSVLNVNPILAVLLSSFTGFGIAISTN 444 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~h~----fy~~~~~~~v~~illa~f~gfg~~m~~n 444 (508)
||-.-+++.+..+++.++..+ +...-...++...+.+...||+-+|.+=
T Consensus 399 ~rs~i~~~g~~~~~~~m~~~l~l~~~~~~~~~~~~~~~~~~flsGl~s~il~i 451 (700)
T COG1480 399 RRSDILKSGLFLALMNMLLLLSLIFAFTLSWYDALQDAIFAFLSGLLSGILVL 451 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555 2333444555556666666666555444
No 170
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.47 E-value=74 Score=39.82 Aligned_cols=80 Identities=21% Similarity=0.440 Sum_probs=49.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHhhhhhcc--------hhHHHHHHHHHhHHHHHHh
Q 010537 372 LAISLPFSCVLGLLSSMIASTMVSRSYIWAY-ASFQFAVVILFAHIFYSVLNV--------NPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 372 laislPFs~vlgll~S~~as~mv~r~y~W~y-a~~qF~lvvlf~h~fy~~~~~--------~~v~~illa~f~gfg~~m~ 442 (508)
.++=+|++++-+.+..+..+-|+. |-|-- .+.=|.+..++..++|..+.+ ..+-+|+.+.|.+|..-+|
T Consensus 1204 ~~vEiP~~l~~stl~~~~~Y~~iG--F~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~ 1281 (1391)
T KOG0065|consen 1204 VLVEIPYNLLQSTLFFLITYYPIG--FYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFS 1281 (1391)
T ss_pred HHHHHHHHHHHHHHhheeeeeecc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhc
Confidence 344578888888888877666663 33432 222344455556666666665 3455777888888877666
Q ss_pred h----hHHHHHHHHH
Q 010537 443 T----NSLIVEYLRW 453 (508)
Q Consensus 443 ~----n~~~~e~~~w 453 (508)
| .+.+..|++|
T Consensus 1282 G~l~p~~~iP~fW~w 1296 (1391)
T KOG0065|consen 1282 GFLQPRSLIPKFWIW 1296 (1391)
T ss_pred ccccccccccceeee
Confidence 5 4455566665
No 171
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=38.35 E-value=14 Score=40.97 Aligned_cols=56 Identities=21% Similarity=0.486 Sum_probs=37.8
Q ss_pred CCCcceeccccccCCCceEEec-CCCCCccceechhhHHHHHhhh------CCcccccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIK------GNKTCDVCKQDVQNLP 310 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~k------g~~tCpICr~~~~nvp 310 (508)
...+|.+|.+......+ +++. |+|+ .+||+.|-+.-.+.. ....|.+|...-..++
T Consensus 167 ~n~qc~vC~~g~~~~~N-rmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGN-RMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ccceeeeeecCCcCccc-eeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 34559999876543334 6666 5576 999999976654321 2348999998776555
No 172
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=38.34 E-value=29 Score=26.77 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=21.6
Q ss_pred hhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhh
Q 010537 418 YSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQ 458 (508)
Q Consensus 418 y~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~ 458 (508)
|+.+--..|+-.+|-+.+|.|+. -++-|.+|++|..
T Consensus 3 ~s~lp~GVIlVF~lVglv~i~iv-----a~~iYRKw~aRkr 38 (43)
T PF08114_consen 3 MSTLPGGVILVFCLVGLVGIGIV-----ALFIYRKWQARKR 38 (43)
T ss_pred cccCCCCeeeehHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 44444455555555555555553 3456999998754
No 173
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=38.33 E-value=96 Score=35.04 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhh
Q 010537 372 LAISLPFSCVLGLLSSMIASTMVS 395 (508)
Q Consensus 372 laislPFs~vlgll~S~~as~mv~ 395 (508)
++..+|+.++..++.++..+-|+.
T Consensus 441 ~l~~lp~~~~~~~if~~i~Y~~~g 464 (617)
T TIGR00955 441 TIAELPLFIILPALFTSITYWMIG 464 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhheecc
Confidence 445699999999888888777765
No 174
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=38.13 E-value=77 Score=30.50 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=9.2
Q ss_pred hhcchhHHHHHHHHHhHHH
Q 010537 420 VLNVNPILAVLLSSFTGFG 438 (508)
Q Consensus 420 ~~~~~~v~~illa~f~gfg 438 (508)
.++...+++++++.+++++
T Consensus 28 ~~~~~~~l~~l~~~~~~~~ 46 (199)
T PF10112_consen 28 GFDHSFLLSLLIGAVAFAV 46 (199)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3344455555555544444
No 175
>COG4769 Predicted membrane protein [Function unknown]
Probab=37.96 E-value=4.1e+02 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=21.2
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHHHH-hhhhhhhh
Q 010537 429 VLLSSFTGFGIAISTNSLIVEYLRWR-MSRQMQSL 462 (508)
Q Consensus 429 illa~f~gfg~~m~~n~~~~e~~~wr-~~~~~~~~ 462 (508)
+.|..+.|++++|..|.++.. .+|- .+..+...
T Consensus 143 ~flGivsG~~vg~~~~~~i~~-v~~~~~~~~~a~~ 176 (181)
T COG4769 143 IFLGIVSGTAVGILANTLIIT-VKINLKRFKAAQK 176 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 346678999999999966654 4444 33343333
No 176
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.71 E-value=1.6e+02 Score=27.24 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=20.2
Q ss_pred cchhHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 010537 422 NVNPILAVLLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 422 ~~~~v~~illa~f~gfg~~m~~n~~~~e~~~ 452 (508)
..+..+-+||+-|.|+.|++.=-++|+-|++
T Consensus 106 ~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~ 136 (142)
T PF11712_consen 106 GWSFPYRVLLGLFGALLVLVAEVVLYIRYLR 136 (142)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555777777777777666666666553
No 177
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=37.60 E-value=2.3e+02 Score=33.30 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=49.4
Q ss_pred HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhh---hhhhhHH---H-HHHHHHHHHHHHHHHHhhhhhc-----chh
Q 010537 358 FLEQLLVSDLGARALAISLPFSCVLGLLSSMIAST---MVSRSYI---W-AYASFQFAVVILFAHIFYSVLN-----VNP 425 (508)
Q Consensus 358 FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~---mv~r~y~---W-~ya~~qF~lvvlf~h~fy~~~~-----~~~ 425 (508)
++-.|.-.++....|+...=+.+.+++..++.+.. --.|+|. | ++..+-++.+++..-++-++++ +-.
T Consensus 79 ~vprl~~~~l~s~~La~~~~~~~~~~i~~~~i~l~~G~tqG~EY~El~w~idi~i~v~wl~~~~n~~~T~~kr~~~~~yv 158 (712)
T PRK14485 79 STQRLLKARMFSDLLSKIHFWGWQLIIVSAAITLPLGFTTSKEYAELEWPIDIAIALIWVVFGVNFFGTLIKRRERHLYV 158 (712)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHcccccCcchhhcccHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 45555556666656655555555555554444221 2258885 4 3334344444444444444443 346
Q ss_pred HHHHHHHHHhHHHHHHhhhHHH
Q 010537 426 ILAVLLSSFTGFGIAISTNSLI 447 (508)
Q Consensus 426 v~~illa~f~gfg~~m~~n~~~ 447 (508)
..-++++++.++++-...|.+.
T Consensus 159 ~~w~~~a~~i~ia~lyi~~~l~ 180 (712)
T PRK14485 159 AIWFYIATIVTVAVLHIVNSLE 180 (712)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 6777888888888777766543
No 178
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=37.56 E-value=38 Score=30.29 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 397 SYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
.|+|++|---.+++++|+.+| +..++-.++|.+....|-++.+.+..+=-.|=.|
T Consensus 17 QYl~~faGgll~~~il~~iLY--i~Gv~~~ici~~~~~~~~~lv~~~f~ln~kyGe~ 71 (96)
T PF13571_consen 17 QYLFYFAGGLLGLFILFVILY--IAGVNQWICIGFGVVSGSLLVWQTFRLNRKYGEH 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhccchhhhHHHHHHHhhhhheeeeeccccccHH
Confidence 799999988888888875544 6678888888777777766666555444444444
No 179
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=37.45 E-value=2.3e+02 Score=28.73 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 427 LAVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 427 ~~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
..+++..+.|+|+++....+-+-+.+++.-.
T Consensus 153 ~~~ll~~l~~~glglils~l~v~~rDi~~i~ 183 (264)
T PRK15176 153 EGMVIAWLLGLSFGYFCDALSERFPLVYKAV 183 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3456678889999999988888887777543
No 180
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK10929 putative mechanosensitive channel protein; Provisional
Probab=36.60 E-value=2.1e+02 Score=35.39 Aligned_cols=51 Identities=8% Similarity=0.225 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 010537 401 AYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYL 451 (508)
Q Consensus 401 ~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~ 451 (508)
+-..+.|+++++.+.+.+..++++.---+.+++.+|+||++..-.++-.|.
T Consensus 875 i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfi 925 (1109)
T PRK10929 875 ITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFI 925 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777777777777777776432233456677777777666665554
No 182
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=36.51 E-value=84 Score=35.98 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=29.9
Q ss_pred hHHHH--HHHHHHHHHHHHHHHhhh---hhcchhHHHHHHHH
Q 010537 397 SYIWA--YASFQFAVVILFAHIFYS---VLNVNPILAVLLSS 433 (508)
Q Consensus 397 ~y~W~--ya~~qF~lvvlf~h~fy~---~~~~~~v~~illa~ 433 (508)
+|+.+ +...|+++.++++++=|- +.++.-|++|++.+
T Consensus 258 K~~~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcG 299 (575)
T KOG1965|consen 258 KFLYLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCG 299 (575)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 56666 789999999999887665 68999999997654
No 183
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=36.37 E-value=32 Score=40.69 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=22.1
Q ss_pred ceechhhHHHHHh----hhCCccccccccccc
Q 010537 280 ALAHKECAVKWFT----IKGNKTCDVCKQDVQ 307 (508)
Q Consensus 280 h~fH~~Cl~kWL~----~kg~~tCpICr~~~~ 307 (508)
+-+-..||..|.. .+.+..|..|.+.+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 7778899999974 345678999998875
No 184
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=36.14 E-value=1e+02 Score=24.70 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=27.6
Q ss_pred HHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhh
Q 010537 415 HIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMS 456 (508)
Q Consensus 415 h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~ 456 (508)
.-++-.+|--.|++++.+|+.|-|+..-.-+.+..|.+.+..
T Consensus 7 ~r~~D~~HR~tV~~Lig~T~~~g~~~~~~~y~~~~~~r~~~~ 48 (59)
T PF14880_consen 7 RRLADIAHRTTVLGLIGFTVYGGGLTVYTVYSYFKYNRRRRA 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888988887777766655555555555555443
No 185
>PHA02972 hypothetical protein; Provisional
Probab=36.13 E-value=1e+02 Score=27.62 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHH
Q 010537 404 SFQFAVVILFAHIFYSVLNVNPILAV 429 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~~~~~~v~~i 429 (508)
++-.|+-++|.++|-.++.+|.++-|
T Consensus 45 H~~iAfnilfLYifS~if~iN~iIii 70 (109)
T PHA02972 45 HIRIAFNILFLYIFSCIFDINIIIII 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEeee
Confidence 44667888999999999999877655
No 186
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=36.07 E-value=22 Score=33.62 Aligned_cols=54 Identities=22% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
--+|-||.+.-. |+-...|=.|-| ...----|+.-|---+-...||+|+..|+.
T Consensus 80 lYeCnIC~etS~--ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSA--EERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccc--hhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 346999986543 345556633434 223344567888766567899999999964
No 187
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=35.90 E-value=1.1e+02 Score=33.69 Aligned_cols=97 Identities=15% Similarity=0.294 Sum_probs=55.3
Q ss_pred hhHHHHHHHH-HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhH
Q 010537 348 IMVSMLAYFC-FLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPI 426 (508)
Q Consensus 348 ViismLayFc-FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v 426 (508)
+++....||| .-..+...+.+-.| .+-+||+.-||++. +.+|.|.|+.-..+..+.... -..++++.-
T Consensus 11 ~~l~s~s~f~LW~vs~yL~hn~~~A-~L~~P~glrL~l~l------~lr~tyw~~~llae~ll~~~l----~~~~~~~~y 79 (497)
T COG3851 11 FFLFSASWFCLWSVSLYLVHNPDQA-VLLFPFGLRLGLML------LLRRTYWPVLLLAEWLLIYWL----TQAVGLAHY 79 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccce-eeecchhhhHhhhe------ecCCccccHHHhHHHHHHHHH----HHHhhhccc
Confidence 4444556788 44455555566655 35689998888653 556899887766554433222 234556665
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHhh
Q 010537 427 LAVLLSSFTGFGIAISTNSLIVEYLRWRMS 456 (508)
Q Consensus 427 ~~illa~f~gfg~~m~~n~~~~e~~~wr~~ 456 (508)
.-+++...+-|-.|.....++-++ .|+.-
T Consensus 80 ~llll~~~vs~~~vllaq~y~~~~-~wqkL 108 (497)
T COG3851 80 PLLLLGSVVSLLPVLLAQRYWHQR-YWQKL 108 (497)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhh-HHHHH
Confidence 445555555555544444444444 56543
No 188
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=35.55 E-value=35 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=25.7
Q ss_pred HHHhhhhhcchhHHHHHHHHHhHHHHHHhhh
Q 010537 414 AHIFYSVLNVNPILAVLLSSFTGFGIAISTN 444 (508)
Q Consensus 414 ~h~fy~~~~~~~v~~illa~f~gfg~~m~~n 444 (508)
+.-...|||=+|+-+|.+|.-+||-+++.++
T Consensus 62 ~~~~~~~V~e~P~~svgiAagvG~llG~Ll~ 92 (94)
T PF05957_consen 62 AEQTEDYVRENPWQSVGIAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHHHHHh
Confidence 3445678999999999999999999987654
No 189
>PRK05978 hypothetical protein; Provisional
Probab=35.00 E-value=1.8e+02 Score=27.77 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=14.7
Q ss_pred HHHhhhCCccccccccccc
Q 010537 289 KWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 289 kWL~~kg~~tCpICr~~~~ 307 (508)
.+|+. +..|+.|+.+|.
T Consensus 47 g~Lkv--~~~C~~CG~~~~ 63 (148)
T PRK05978 47 AFLKP--VDHCAACGEDFT 63 (148)
T ss_pred ccccc--CCCccccCCccc
Confidence 67777 889999999995
No 190
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=34.52 E-value=2.1e+02 Score=24.86 Aligned_cols=9 Identities=11% Similarity=0.807 Sum_probs=4.1
Q ss_pred hhhHHHHHH
Q 010537 395 SRSYIWAYA 403 (508)
Q Consensus 395 ~r~y~W~ya 403 (508)
+++|.|.+.
T Consensus 11 R~~fw~~~l 19 (120)
T PF05656_consen 11 RKEFWWFFL 19 (120)
T ss_pred HHHHHHHHH
Confidence 455544433
No 191
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=34.12 E-value=4.1e+02 Score=27.47 Aligned_cols=49 Identities=4% Similarity=0.147 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 010537 404 SFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~ 452 (508)
.+.++++++.+.+....+.++..--+..+++.|+++++.....+-.+..
T Consensus 72 ~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~s 120 (286)
T PRK10334 72 LVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAA 120 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555543333335566777777776666655544
No 192
>COG0344 Predicted membrane protein [Function unknown]
Probab=33.87 E-value=2.4e+02 Score=28.22 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHH----hHHHHHHhhh----HHHHHHHHHHhhhhhhhhh
Q 010537 397 SYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSF----TGFGIAISTN----SLIVEYLRWRMSRQMQSLH 463 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f----~gfg~~m~~n----~~~~e~~~wr~~~~~~~~~ 463 (508)
-+.|.++..-++...+.+. +.+|+-+..+++.+++.. ...+...... .++..+.-||-|.+++.-.
T Consensus 119 ~l~p~~~l~~~~~~l~i~~-l~ky~Slasl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~rHr~NI~Rl~ 192 (200)
T COG0344 119 ALAPWLALIGAATWLLIAL-LTKYSSLASLVAAILAAPFLANFDLYLIAPQIGFPVALLAILVIYRHRDNIQRLL 192 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766655555555 889999998888755554 2222222211 1455667788777666544
No 193
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=33.71 E-value=1.4e+02 Score=35.78 Aligned_cols=44 Identities=18% Similarity=0.441 Sum_probs=27.3
Q ss_pred hhHHHHHHHHH--HHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhh
Q 010537 396 RSYIWAYASFQ--FAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMS 456 (508)
Q Consensus 396 r~y~W~ya~~q--F~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~ 456 (508)
|=|+|....+. .+|+++|.. +..---|||.+..+|-.|..||..
T Consensus 604 kyyHW~LSflG~sLC~~iMF~~-----------------SWyyAlvAm~~a~~IYKYiEykGA 649 (1075)
T KOG2082|consen 604 KYYHWSLSFLGASLCLAIMFIS-----------------SWYYALVAMLIAGVIYKYIEYKGA 649 (1075)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 67899876654 344455443 222223567777778888888854
No 194
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=33.65 E-value=23 Score=38.08 Aligned_cols=49 Identities=22% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.+++-.|.||+.-+.+ +.. ..|. |.|=..|+..|+.. +..||.|+....
T Consensus 18 ~~~~l~C~~C~~vl~~---p~~~~~cg-----h~fC~~C~~~~~~~--~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRD---PVQTTTCG-----HRFCAGCLLESLSN--HQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccC---CCCCCCCC-----Ccccccccchhhcc--CcCCcccccccc
Confidence 3456789999877653 333 5899 99999999999998 889999977765
No 195
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=33.64 E-value=73 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.802 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010537 398 YIWAYASFQFAVVILFAH 415 (508)
Q Consensus 398 y~W~ya~~qF~lvvlf~h 415 (508)
|||. ++-+.+++|.+.
T Consensus 6 yVW~--sYg~t~~~l~~l 21 (46)
T PF04995_consen 6 YVWS--SYGVTALVLAGL 21 (46)
T ss_pred HHHH--HHHHHHHHHHHH
Confidence 5555 444444444443
No 196
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=33.57 E-value=2.2e+02 Score=35.32 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=16.3
Q ss_pred hhHHHHHhhhCCccccccccc
Q 010537 285 ECAVKWFTIKGNKTCDVCKQD 305 (508)
Q Consensus 285 ~Cl~kWL~~kg~~tCpICr~~ 305 (508)
.-+..|+.......|+..++.
T Consensus 954 ~~l~~fl~~~~~~~c~~gg~~ 974 (1204)
T TIGR00917 954 EYLPFFLNDNPSADCAKGGHA 974 (1204)
T ss_pred HHHHHHhcCCCcccccccccc
Confidence 677888876556689999874
No 197
>TIGR01620 hyp_HI0043 conserved hypothetical protein, TIGR01620. This model includes putative membrane proteins from alpha and gamma proteobacteria, each making up their own clade. The two clades have less than 25% identity between them. We could not find support for the assignment to the sequence from Brucella of being a GTP-binding protein.
Probab=33.56 E-value=1.4e+02 Score=31.40 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=33.2
Q ss_pred HHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhhhcc
Q 010537 415 HIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSLHQQI 466 (508)
Q Consensus 415 h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~~~~ 466 (508)
..+|..+--++.|....++++++.+...+..++.|+.+.++-+..+..|++.
T Consensus 35 ~~i~~~~~~~~wLg~~~~~l~~~~~l~~~~~~~rE~~~l~RL~~~~~~r~~a 86 (289)
T TIGR01620 35 QWIRNLFQRSDWLGLTATIALIVIIFAGLALVGREWRRLMRLNARQSLKADA 86 (289)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666666666888998887766555555443
No 198
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=33.52 E-value=37 Score=34.44 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 010537 376 LPFSCVLGLLSSMIASTMVSRSYIWAYAS 404 (508)
Q Consensus 376 lPFs~vlgll~S~~as~mv~r~y~W~ya~ 404 (508)
+|+++-++++-++.|+.+..-.++|..+.
T Consensus 47 ~~~~dp~~~~q~~~a~~~~~~~~l~g~~i 75 (271)
T PRK09477 47 IPLTDPLATLQSLAAGHLPATVALIGALI 75 (271)
T ss_pred ccccCHHHHHHHHHhcChhHHHHHHHHHH
Confidence 66666677777777666654444444333
No 199
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=33.31 E-value=80 Score=27.39 Aligned_cols=16 Identities=19% Similarity=0.617 Sum_probs=12.8
Q ss_pred HHhhhCCccccccccccc
Q 010537 290 WFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 290 WL~~kg~~tCpICr~~~~ 307 (508)
+|+. +..|+.|+.++.
T Consensus 4 ~Lk~--~~~C~~CG~d~~ 19 (86)
T PF06170_consen 4 YLKV--APRCPHCGLDYS 19 (86)
T ss_pred cccC--CCcccccCCccc
Confidence 4555 678999999994
No 200
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=33.27 E-value=1.7e+02 Score=33.15 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=27.3
Q ss_pred hhhhhhhhhHHHHHHHHHH------HHhhhhhhhHHHHHHHHHHHHHHHHHH-Hhhhhhcc
Q 010537 370 RALAISLPFSCVLGLLSSM------IASTMVSRSYIWAYASFQFAVVILFAH-IFYSVLNV 423 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~------~as~mv~r~y~W~ya~~qF~lvvlf~h-~fy~~~~~ 423 (508)
..+.|++-|-.+|=++++. ..+.| -|=|+.=...+-++|+++|++ +||.+-.+
T Consensus 131 eGllislafKLliLlig~WAlf~R~~~a~l-PRif~fRa~ll~Lvfl~~~syWLFY~vrIl 190 (505)
T PF06638_consen 131 EGLLISLAFKLLILLIGTWALFFRRPRADL-PRIFVFRALLLVLVFLFLFSYWLFYGVRIL 190 (505)
T ss_pred cceeHHHHHHHHHHHHHHHHHhcCcccCCC-chhHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 6677888887765444332 12223 244443334444555555554 56655444
No 201
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=33.26 E-value=2.4e+02 Score=32.63 Aligned_cols=52 Identities=23% Similarity=0.609 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHH--HHHHHHHhhhhhcchhHHHHHHHHHhH-----HHHHHhhhHHHHHHHHHH
Q 010537 382 LGLLSSMIASTMVSRSYIWAYASFQFAV--VILFAHIFYSVLNVNPILAVLLSSFTG-----FGIAISTNSLIVEYLRWR 454 (508)
Q Consensus 382 lgll~S~~as~mv~r~y~W~ya~~qF~l--vvlf~h~fy~~~~~~~v~~illa~f~g-----fg~~m~~n~~~~e~~~wr 454 (508)
|-+++++| |+++.+.+.= -+.|+++| .|+-++-| |+++|--+ +=.+|.+|.
T Consensus 522 L~~lLGlT----------W~fgi~s~~~~~~~v~~YlF-----------ti~NalQG~fIFi~~cll~~k-vr~~~~k~~ 579 (610)
T KOG4193|consen 522 LLFLLGLT----------WIFGIFSWLPGTSVVFAYLF-----------TIFNALQGVFIFIFHCLLRKK-VRKEYRKWL 579 (610)
T ss_pred HHHHHHHH----------HHHHHHHHhcccchHHHHHH-----------HHHHHhhhhHhhHhhhhhhHH-HHHHHHHHh
Confidence 55566666 8888877765 44444444 34445555 34444444 455666665
Q ss_pred h
Q 010537 455 M 455 (508)
Q Consensus 455 ~ 455 (508)
.
T Consensus 580 ~ 580 (610)
T KOG4193|consen 580 C 580 (610)
T ss_pred c
Confidence 5
No 202
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=33.25 E-value=1.1e+02 Score=28.13 Aligned_cols=13 Identities=31% Similarity=0.953 Sum_probs=6.0
Q ss_pred hhhHHHHHHHHHH
Q 010537 376 LPFSCVLGLLSSM 388 (508)
Q Consensus 376 lPFs~vlgll~S~ 388 (508)
.++-+++|++.++
T Consensus 109 ~~~Rvllgl~~al 121 (142)
T PF11712_consen 109 FPYRVLLGLFGAL 121 (142)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444544444
No 203
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.08 E-value=1.2e+02 Score=34.57 Aligned_cols=27 Identities=33% Similarity=0.285 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhHHH
Q 010537 374 ISLPFSCVLGLLSSMIASTMVSRSYIW 400 (508)
Q Consensus 374 islPFs~vlgll~S~~as~mv~r~y~W 400 (508)
..+||.+++.++.+++.+-|+.-..=|
T Consensus 440 ~~lP~~~i~~~if~~i~Y~m~gl~~~~ 466 (613)
T KOG0061|consen 440 AELPFLLVLSIIFSSIVYWMVGLNPGL 466 (613)
T ss_pred HHhHHHHHHHHHHHHHHHHhccCCcch
Confidence 689999999999999988888744333
No 204
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=32.91 E-value=43 Score=35.88 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCCCCCCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 244 AGEDIPEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 244 ~~e~~~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
+.+..+.+...|.+|+-.. ..||-|--+=-.|-..|+.+.+.. ...||+=+...
T Consensus 292 e~e~l~~~~~~CpvClk~r-------~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~ 345 (357)
T KOG0826|consen 292 ESELLPPDREVCPVCLKKR-------QNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPA 345 (357)
T ss_pred ccccCCCccccChhHHhcc-------CCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcc
Confidence 3444455667899998553 344444322266889999999997 77899866654
No 205
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=32.84 E-value=43 Score=33.79 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHH---H-HHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 010537 347 LIMVSMLAYFCF---L-EQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSY 398 (508)
Q Consensus 347 LViismLayFcF---L-eqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y 398 (508)
+|.+++++.|+. . -+++.+++..+-+.=.+|+++-++.+-++.|+....-.+
T Consensus 7 ~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~ 62 (255)
T TIGR02163 7 LVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNA 62 (255)
T ss_pred HHHHHHHHHHHcchhhcceEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHH
Confidence 345555555542 1 134445554433332477777778888887776655444
No 206
>COG2891 MreD Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=32.82 E-value=1.4e+02 Score=28.86 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchh
Q 010537 376 LPFSCVLGLLSSMI-ASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNP 425 (508)
Q Consensus 376 lPFs~vlgll~S~~-as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~ 425 (508)
+=.++++|++..+. ++.+= .| ++-|.++..+++.+|..++.++
T Consensus 56 i~~afvlGll~D~~~~sllG--v~-----al~f~li~ylv~~~~~~l~~~~ 99 (167)
T COG2891 56 IGYAFVLGLLYDVYYGSLLG--VH-----ALGFSLIGYLVAKLQKVLRNNA 99 (167)
T ss_pred hHHHHHHHHHHHHHccchHH--HH-----HHHHHHHHHHHHHHHHHHHHhH
Confidence 45677888888875 34443 34 4467778888888888888873
No 207
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=32.38 E-value=3.2e+02 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHH
Q 010537 426 ILAVLLSSFTGFGIAISTNSLIVEY 450 (508)
Q Consensus 426 v~~illa~f~gfg~~m~~n~~~~e~ 450 (508)
+..++++++..+++....+..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (146)
T PF14667_consen 91 LIKPILASIVMAIVLYILNSLLPNI 115 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655555555444
No 208
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=32.23 E-value=2.1e+02 Score=23.97 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcchhHHHHHH-HHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhh
Q 010537 402 YASFQFAVVILFAHIFYSVLNVNPILAVLL-SSFTGFGIAISTNSLIVEYLRWRMSRQMQSLH 463 (508)
Q Consensus 402 ya~~qF~lvvlf~h~fy~~~~~~~v~~ill-a~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~ 463 (508)
=|.-||...++=..+| |+||+ .|++|+-++.|+--.+...+| .|..+.++|
T Consensus 17 dafteflvsivdiiif---------lailfgftiagwlvvfcirlv~sailr--~r~aih~eq 68 (73)
T PF07069_consen 17 DAFTEFLVSIVDIIIF---------LAILFGFTIAGWLVVFCIRLVCSAILR--ARSAIHPEQ 68 (73)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHh--cccccChHH
Confidence 3445555554444433 44544 467788888888755555544 444444333
No 209
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=31.61 E-value=4.3e+02 Score=29.95 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhcchh
Q 010537 405 FQFAVVILFAHIFYSVLNVNP 425 (508)
Q Consensus 405 ~qF~lvvlf~h~fy~~~~~~~ 425 (508)
+.++..++|..++|-++++++
T Consensus 447 ~~~~~~~if~~i~Y~~~gl~~ 467 (617)
T TIGR00955 447 LFIILPALFTSITYWMIGLRS 467 (617)
T ss_pred HHHHHHHHHHhhhheeccCCc
Confidence 355667788888888888764
No 210
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=31.38 E-value=3.8e+02 Score=30.70 Aligned_cols=22 Identities=14% Similarity=0.440 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 010537 396 RSYIWAYASFQFAVVILFAHIF 417 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~h~f 417 (508)
-+|+++|+.+=|+|.+.+..+|
T Consensus 509 ~~F~~i~~v~l~aF~~~~~~l~ 530 (743)
T TIGR00870 509 LRFLFIYAVVLFGFACGLNQLY 530 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999888888777766665
No 211
>COG1784 Predicted membrane protein [Function unknown]
Probab=31.32 E-value=1e+02 Score=33.62 Aligned_cols=12 Identities=50% Similarity=0.778 Sum_probs=6.3
Q ss_pred hHHHHHHHHHhH
Q 010537 425 PILAVLLSSFTG 436 (508)
Q Consensus 425 ~v~~illa~f~g 436 (508)
|+-++++.-|+|
T Consensus 175 pv~~~l~pLftG 186 (395)
T COG1784 175 PVGSPLLPLFTG 186 (395)
T ss_pred CccchHHHHHHH
Confidence 555555555555
No 212
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=31.01 E-value=1.9e+02 Score=26.48 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 412 LFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 412 lf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
++..+++..++.+.-+ +.+.-..+|++++.+-.+-..|.+||.++
T Consensus 70 ~~ii~l~~~i~~~~~~-~~~~i~i~~~i~l~vf~~~~~~ye~~e~~ 114 (118)
T PF12676_consen 70 LFIILLISMIFDNLEL-ITILIAIAFAIALLVFAISYLYYEYREDK 114 (118)
T ss_pred HHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 3333333344444433 22223678888888888888888888877
No 213
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.96 E-value=9.1 Score=39.91 Aligned_cols=37 Identities=30% Similarity=0.584 Sum_probs=30.0
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK 294 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k 294 (508)
.+|.+|++++..++......|.| ++|..|+-.|+++.
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLP-----VFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccc-----cccccccccccccc
Confidence 38999999997655566777886 79999999999874
No 214
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.72 E-value=4.7e+02 Score=24.72 Aligned_cols=8 Identities=0% Similarity=0.007 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 010537 446 LIVEYLRW 453 (508)
Q Consensus 446 ~~~e~~~w 453 (508)
.++.+.-|
T Consensus 159 ~l~k~~~~ 166 (181)
T PF08006_consen 159 YLTKLFIK 166 (181)
T ss_pred HHHHHHHH
Confidence 34444433
No 215
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=30.71 E-value=90 Score=29.35 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=21.9
Q ss_pred HhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 010537 416 IFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWR 454 (508)
Q Consensus 416 ~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr 454 (508)
++..++..+...-+..+++.|.|++.....++..+..|=
T Consensus 15 ~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi 53 (206)
T PF00924_consen 15 IILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGI 53 (206)
T ss_dssp HHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443322344556667777777777888887774
No 216
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=30.58 E-value=4.1e+02 Score=29.71 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc-chhHHHHHHHHHhHHHHHHh
Q 010537 380 CVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLN-VNPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 380 ~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~-~~~v~~illa~f~gfg~~m~ 442 (508)
++++++++..|-..-.|+++..--.+..++.++++.+ .+.+ +++.+-+++.-+.|+|-++.
T Consensus 59 ~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l--~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 59 LLLSLFAGALADRFDRRRILILSQLLRALVALLLAVL--AFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH--HHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887787665444444333333322 2233 34444344444555555543
No 217
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=30.51 E-value=2e+02 Score=30.90 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHH
Q 010537 377 PFSCVLGLLSSMI 389 (508)
Q Consensus 377 PFs~vlgll~S~~ 389 (508)
|+.+++|++.++.
T Consensus 189 ~~~l~~G~v~~~~ 201 (357)
T PRK12652 189 WFDLLTGAVTALI 201 (357)
T ss_pred HHHHHHHHHHHHH
Confidence 5666667666654
No 218
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=30.51 E-value=3.4e+02 Score=24.87 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHH--hhhhhcchhH
Q 010537 397 SYIWAYASFQFAVVILFAHI--FYSVLNVNPI 426 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h~--fy~~~~~~~v 426 (508)
+|+|.-..+.+++.+++.++ +-+++++.++
T Consensus 126 ~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l 157 (182)
T PF00689_consen 126 KWLLIAILISIALQILIVYVPGLNRIFGTAPL 157 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTHHHHST----
T ss_pred chHHHHHHHHHHHHHHHhcchhhHhhhcccCC
Confidence 45555555566666666666 6677777766
No 219
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.32 E-value=40 Score=34.13 Aligned_cols=48 Identities=21% Similarity=0.454 Sum_probs=38.3
Q ss_pred CcceeccccccCCC---ceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 253 AVCRICLVELGEGG---DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 253 ~~CrICl~e~ee~e---~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
..|-||-++|...+ .+++|-|+ |-+=+.|+.+-+.. +...||-||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~-----h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCG-----HTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccC-----ceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 45999999997543 35677799 99999999887765 467889999985
No 220
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=30.29 E-value=5.1e+02 Score=28.00 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHH-HHhhhhhcchhHHHHHHHHHhHHHHH
Q 010537 375 SLPFSCVLGLLSSMIASTMVSRSYIWAYA-SFQFAVVILFA-HIFYSVLNVNPILAVLLSSFTGFGIA 440 (508)
Q Consensus 375 slPFs~vlgll~S~~as~mv~r~y~W~ya-~~qF~lvvlf~-h~fy~~~~~~~v~~illa~f~gfg~~ 440 (508)
.+|.-...++-+-..|.-.+.++|.|... -+-+.++++.+ .+++....-+.++++-.+...|+.+-
T Consensus 104 ~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~~~i~~la~g~~~g~~~~ 171 (451)
T PF03023_consen 104 LAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQENIYALAWGVLIGAIIQ 171 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33433333333333455577789988763 33344444443 33444444467777766666666553
No 221
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.28 E-value=63 Score=33.39 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=35.0
Q ss_pred HHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhhhc
Q 010537 411 ILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSLHQQ 465 (508)
Q Consensus 411 vlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~~~ 465 (508)
+=|---||.+.++|..|..++. |.||-+.+ - -++.|.+=|+.+..-+++.+
T Consensus 209 v~~sd~f~~y~n~q~wLwwi~~-vlG~ll~l--r-~~i~YikVrrm~~~~s~~~q 259 (262)
T KOG4812|consen 209 VRFSDDFESYFNGQYWLWWIFL-VLGLLLFL--R-GFINYIKVRRMEEKYSNQSQ 259 (262)
T ss_pred eecccccccccccchHHHHHHH-HHHHHHHH--H-HHHhHHHHhhHHHHHhcccc
Confidence 3355668999999999988664 44555433 3 35778888888877776643
No 222
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=30.16 E-value=2.1e+02 Score=29.70 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhcchhHHH-HHHHHHhHHHHHH
Q 010537 407 FAVVILFAHIFYSVLNVNPILA-VLLSSFTGFGIAI 441 (508)
Q Consensus 407 F~lvvlf~h~fy~~~~~~~v~~-illa~f~gfg~~m 441 (508)
++++.++..++|.++|--.-+. +.|....|+|+.|
T Consensus 111 l~~~~~~l~~~yp~~KR~t~~~~~~lG~~~g~~~l~ 146 (286)
T PRK12895 111 LSPIVIFLFIIDPFLKRYTAWRHIYMGSIIGLGVLA 146 (286)
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHHHHHHhHHHH
Confidence 4445556666666665544444 3344444444433
No 223
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=29.76 E-value=1.2e+02 Score=34.32 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHH
Q 010537 375 SLPFSCVLGLLSSMI 389 (508)
Q Consensus 375 slPFs~vlgll~S~~ 389 (508)
+=.|++|.|||.|++
T Consensus 568 aHlfG~i~GLl~s~~ 582 (652)
T KOG2290|consen 568 AHLFGTIFGLLTSII 582 (652)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345888888888874
No 224
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=29.29 E-value=4.1e+02 Score=27.84 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 010537 399 IWAYASFQFAVVILFAHIF 417 (508)
Q Consensus 399 ~W~ya~~qF~lvvlf~h~f 417 (508)
..+||.+|=.++-.+..+|
T Consensus 117 ~~~YA~~EG~flG~iS~~f 135 (274)
T PF12811_consen 117 APIYAVLEGVFLGGISAVF 135 (274)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666655554444333
No 225
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=29.25 E-value=27 Score=26.11 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=25.6
Q ss_pred cceeccccccCCCceEE-ecCCCCCccceechhhHHHHHh----hhCCccccccc
Q 010537 254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT----IKGNKTCDVCK 303 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~----~kg~~tCpICr 303 (508)
.|.||..... ++..+. -.|. .+||..|+..=.. ..+.-.|+.|+
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~-----~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCN-----RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTS-----CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCC-----hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4888976332 233332 2355 9999999864332 11245777775
No 226
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=29.11 E-value=1.2e+02 Score=31.55 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhh
Q 010537 404 SFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMS 456 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~ 456 (508)
.++=-++.+|+..||.+--|+ .-||.++|.||+=| |+-..
T Consensus 157 ~y~~k~lnylARNFYNlr~lA------------LflAFaINFILLFY-KVs~~ 196 (274)
T PF06459_consen 157 VYRTKFLNYLARNFYNLRFLA------------LFLAFAINFILLFY-KVSTS 196 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH-HhccC
Confidence 345557889999999986432 23445678666644 45443
No 227
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=29.11 E-value=18 Score=37.41 Aligned_cols=52 Identities=17% Similarity=0.408 Sum_probs=38.9
Q ss_pred CCCcceecccccc--CCCceEEec-CCCCCccceechhhHHHHHhhhCCcccc--cccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCD--VCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCp--ICr~~~~n 308 (508)
++..|.||..+-- .+-..++.| |- |..-..|+++-|.. |-..|| -|...++.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECy-----HrmCESCvdRIFs~-GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECY-----HRMCESCVDRIFSR-GPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHH-----HHHHHHHHHHHhcC-CCCCCCCccHHHHHHH
Confidence 4568999987643 222455677 87 77888999999976 789999 89887763
No 228
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=29.07 E-value=75 Score=35.58 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhcchhHHHHHHHHHh
Q 010537 406 QFAVVILFAHIFYSVLNVNPILAVLLSSFT 435 (508)
Q Consensus 406 qF~lvvlf~h~fy~~~~~~~v~~illa~f~ 435 (508)
-+++|++|..+||+...+-+++++++..+.
T Consensus 342 g~ilV~i~m~~~yr~~glia~iaL~~~v~~ 371 (498)
T PRK05812 342 GLALVLLFMILYYRLFGLIANIALVANLVL 371 (498)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444444444445554444444444444333
No 229
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=29.05 E-value=1.4e+02 Score=29.28 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=11.8
Q ss_pred hHHHHHHhhhHHHHHHHHHHh
Q 010537 435 TGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 435 ~gfg~~m~~n~~~~e~~~wr~ 455 (508)
.++|++|-..+=-+++.+||.
T Consensus 140 ~~~gl~~Ya~~Ra~q~Rr~R~ 160 (170)
T PF11241_consen 140 SGRGLGWYAFMRAMQIRRWRL 160 (170)
T ss_pred CCcchhhHHHHHHhccccccC
Confidence 455555555555555566654
No 230
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=29.05 E-value=5.7e+02 Score=26.89 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=36.6
Q ss_pred hhhhhhhhhHHHHHHHHHH--------------------HHhhhhhhhHHHHHH----HHHH-HHHHHHHHHhhhhhcc-
Q 010537 370 RALAISLPFSCVLGLLSSM--------------------IASTMVSRSYIWAYA----SFQF-AVVILFAHIFYSVLNV- 423 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~--------------------~as~mv~r~y~W~ya----~~qF-~lvvlf~h~fy~~~~~- 423 (508)
.++-..+-++.++|+.... +..++|.--++|+|. ..+| .++++|.-.++.++.+
T Consensus 48 ~~~~f~L~g~li~g~~~~~~~iar~e~~~~~~~f~gFknFg~tlvl~lli~iF~flWSli~~~pi~i~~ys~s~~~~~~~ 127 (271)
T COG5523 48 SVILFPLLGALILGSVWCSLSIARLEIPKVEKLFSGFKNFGTTLVLYLLIKIFRFLWSLIAFVPIFIIFYSGSASKIILN 127 (271)
T ss_pred HHHHHHhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhhHHHhhc
Confidence 4555556666666665443 234445555556552 2333 3344444455555543
Q ss_pred -h-----hHHHHHHHH--HhHHHHHHhh
Q 010537 424 -N-----PILAVLLSS--FTGFGIAIST 443 (508)
Q Consensus 424 -~-----~v~~illa~--f~gfg~~m~~ 443 (508)
. .....++++ +.||++++..
T Consensus 128 ~s~~d~~i~~~lm~~gl~~ig~~i~ii~ 155 (271)
T COG5523 128 LSASDVVIEVALMLFGLRLIGLLILIIL 155 (271)
T ss_pred ccccchhhhHHHHHhhHHHHHHHHHHHH
Confidence 2 233444554 5666665443
No 231
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.01 E-value=72 Score=29.49 Aligned_cols=37 Identities=24% Similarity=0.462 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhhh
Q 010537 424 NPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSLHQ 464 (508)
Q Consensus 424 ~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~~ 464 (508)
.++..|+|..++|+ |+|. +++-|+-||++.+.-.+.|
T Consensus 64 ~~i~~Ii~gv~aGv-Ig~I---lli~y~irR~~Kk~~~~~~ 100 (122)
T PF01102_consen 64 PAIIGIIFGVMAGV-IGII---LLISYCIRRLRKKSSSDVQ 100 (122)
T ss_dssp TCHHHHHHHHHHHH-HHHH---HHHHHHHHHHS--------
T ss_pred cceeehhHHHHHHH-HHHH---HHHHHHHHHHhccCCCCCC
Confidence 45666777776665 3332 5677777877776444443
No 232
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=28.95 E-value=2.7e+02 Score=33.08 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHH--HhhhhhcchhH
Q 010537 397 SYIWAYASFQFAVVILFAH--IFYSVLNVNPI 426 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h--~fy~~~~~~~v 426 (508)
.|+|.-..+.+++.+++.+ .+-.+++..++
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l 854 (884)
T TIGR01522 823 RMFNYAVGGSIIGQLLVIYFPPLQSVFQTEAL 854 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5566655555555555554 23445555443
No 233
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=28.84 E-value=5.1e+02 Score=24.58 Aligned_cols=95 Identities=13% Similarity=0.104 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhcccchhhhhhhhhHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---------Hhhhh
Q 010537 351 SMLAYFCFLEQLLVSDLGARALAISLPFSCV-LGLLSSMIASTMVSRSYIWAYASFQFAVVILFAH---------IFYSV 420 (508)
Q Consensus 351 smLayFcFLeqLLv~~lg~~AlaislPFs~v-lgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h---------~fy~~ 420 (508)
..+..|+++-.+++. .+.+.+|-+++ +-+|.-......+ +--|+-....|.+-.|-.. .++.+
T Consensus 14 ~ill~~~~lGe~i~~-----ll~lPiPGsViGMlLL~l~L~~~~v--k~~~v~~~a~~LL~~m~LfFVPagVGim~~~~l 86 (141)
T PRK04125 14 FIFAAIMLISNIIAS-----FLPIPMPASVIGLVLLFVLLCTKVV--KLEQVESLGTALTNNIGFLFVPSGISVINSLGV 86 (141)
T ss_pred HHHHHHHHHHHHHHH-----HcCCCCcHHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHHHHHHHhhhHhHHHHhHHH
Confidence 334444444444444 44467787766 3334333333333 3337776666665443322 22333
Q ss_pred hcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 421 LNVNPILAVLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 421 ~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
++ +--+.|+++.+.+--++|.......+|..-
T Consensus 87 l~-~~~~~Il~~ivvSTllvl~vtg~v~~~l~r 118 (141)
T PRK04125 87 MS-QYPVQIIGVIIVATILLLACTGLFSQFILG 118 (141)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 233556666666666677777777777543
No 234
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=28.79 E-value=1.2e+02 Score=37.86 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhh
Q 010537 370 RALAISLPFSCVLGLLSSMIASTMVS 395 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~~as~mv~ 395 (508)
+-+..-+||.++.+++.++..+-|+.
T Consensus 1176 a~~l~elP~~~~~~~if~~i~Y~~~G 1201 (1394)
T TIGR00956 1176 AQITVEIPYNLVAGTIFFFIWYYPVG 1201 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccc
Confidence 44556689999999888887666653
No 235
>PRK15397 nicotinamide riboside transporter PnuC; Provisional
Probab=28.69 E-value=1.6e+02 Score=29.90 Aligned_cols=19 Identities=11% Similarity=-0.059 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 010537 403 ASFQFAVVILFAHIFYSVL 421 (508)
Q Consensus 403 a~~qF~lvvlf~h~fy~~~ 421 (508)
+.+|+.++++..+.+|.|.
T Consensus 71 ~~Lq~~y~im~iyGw~~W~ 89 (239)
T PRK15397 71 LLLQLFFFAANIYGWYAWS 89 (239)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666664
No 236
>PLN02248 cellulose synthase-like protein
Probab=28.67 E-value=2.2e+02 Score=35.16 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.1
Q ss_pred eeeccchhhhHHHHHHHH-HHHHHh
Q 010537 340 VWQDMPVLIMVSMLAYFC-FLEQLL 363 (508)
Q Consensus 340 ~W~d~p~LViismLayFc-FLeqLL 363 (508)
.|++..+|+|.++-+||+ +++.+|
T Consensus 976 WWrnQq~W~I~~tSA~L~A~l~aiL 1000 (1135)
T PLN02248 976 WWRNEQFWLIGGTSAHLAAVLQGLL 1000 (1135)
T ss_pred HhhhhheeeehhhHHHHHHHHHHHH
Confidence 488888889988889888 888877
No 237
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=28.35 E-value=1.7e+02 Score=27.02 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhh
Q 010537 430 LLSSFTGFGIAISTNSLIVEYLRWRMSRQMQSLH 463 (508)
Q Consensus 430 lla~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~ 463 (508)
+|+=++.||||.+ .++.||.|.+++.......
T Consensus 78 ll~E~fiF~Va~~--li~~E~~Rs~~ke~~Ke~~ 109 (134)
T PF07047_consen 78 LLGEAFIFSVAAG--LIIYEYWRSARKEAKKEEE 109 (134)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHH
Confidence 5666677776544 3788888887765444433
No 238
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=28.23 E-value=6.7e+02 Score=25.78 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHH-------HHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHH
Q 010537 382 LGLLSSMIASTMVSRSYIWAYASF-------QFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYL 451 (508)
Q Consensus 382 lgll~S~~as~mv~r~y~W~ya~~-------qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~ 451 (508)
.|.+.|+.+|.-.++++.|+.+.. ++.+..++.++. ... ..+..+++.+..+|--++.+=|++.=|.
T Consensus 170 ~~i~~Amr~S~~Lt~~~~~ii~p~vL~wll~k~~l~ll~s~~~--~~~-~~i~~~il~~l~nlls~~~~IylFRlyM 243 (248)
T PF06790_consen 170 KGIFDAMRASWKLTFGNFRIIIPAVLLWLLAKLLLLLLASQLS--ILS-PNIASVILNTLSNLLSAFLIIYLFRLYM 243 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888988887778888865421 222222222211 111 3456678888888888888777776553
No 239
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=28.22 E-value=2.4e+02 Score=25.63 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHH
Q 010537 378 FSCVLGLLSSMI--ASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVL 430 (508)
Q Consensus 378 Fs~vlgll~S~~--as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~il 430 (508)
.+|.|=+|.+.+ ...-..+.|.++.-..-|.+++.|.+.+-. +.+.|.++=.
T Consensus 26 vA~lLVv~G~~IN~~lrr~l~~~~Fi~Rt~~FIlicAFGYGll~-v~~tP~l~~~ 79 (106)
T PF11872_consen 26 VACLLVVYGDDINRFLRRLLSGYHFILRTLAFILICAFGYGLLI-VWLTPLLARQ 79 (106)
T ss_pred HHHHHHHHhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 456666666654 222333678888889999999999886643 3444544433
No 240
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=19 Score=38.02 Aligned_cols=44 Identities=27% Similarity=0.699 Sum_probs=29.3
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceec-hhhHHHHHhhhCCccccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAH-KECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH-~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
..-|+||++.- -+-..|+|+ |.+- .+|= |.-+.|||||+.++.+
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCG-----HmVtCt~CG------krm~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECG-----HMVTCTKCG------KRMNECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCC---cceEEeecC-----cEEeehhhc------cccccCchHHHHHHHH
Confidence 67899998642 246689999 6543 2441 1234899999988543
No 241
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=27.97 E-value=1.7e+02 Score=30.32 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 010537 393 MVSRSYIWAYASFQFAVVIL 412 (508)
Q Consensus 393 mv~r~y~W~ya~~qF~lvvl 412 (508)
|..|+ +|.|..+.|.++..
T Consensus 201 i~~k~-~~~ff~lGFvl~ay 219 (262)
T PRK15065 201 MATRE-LMPFFYLGFVLAAF 219 (262)
T ss_pred Hhccc-hHHHHHHHHHHHHH
Confidence 44455 48988888866554
No 242
>PRK09478 mglC beta-methylgalactoside transporter inner membrane component; Provisional
Probab=27.94 E-value=7.2e+02 Score=26.01 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=8.9
Q ss_pred chhHHHHHHHHHhHHHHHH
Q 010537 423 VNPILAVLLSSFTGFGIAI 441 (508)
Q Consensus 423 ~~~v~~illa~f~gfg~~m 441 (508)
+...++++++..+|..++.
T Consensus 103 ~~~~~ai~~a~~~g~l~G~ 121 (336)
T PRK09478 103 MPIALVILIVCAIGAVIGL 121 (336)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 3444555555444444433
No 243
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=27.92 E-value=6.4e+02 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=18.1
Q ss_pred ccchhhhhhhhh---HHHHHHHHHHHHhhhh
Q 010537 367 LGARALAISLPF---SCVLGLLSSMIASTMV 394 (508)
Q Consensus 367 lg~~AlaislPF---s~vlgll~S~~as~mv 394 (508)
+|..--.|..|| +.++|++.++.|..+.
T Consensus 218 vGAt~~~I~~pfl~eg~~~gl~G~~~g~~l~ 248 (309)
T TIGR00439 218 LGATDSFILRPFLYQGMWQSIFGALVSLILS 248 (309)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666778888 3346677777765554
No 244
>PRK09459 pspG phage shock protein G; Reviewed
Probab=27.83 E-value=2.6e+02 Score=24.21 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=21.9
Q ss_pred HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHH
Q 010537 358 FLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWA 401 (508)
Q Consensus 358 FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ 401 (508)
|...|++.....-++..++-+++++.++.++.+ ++.+-.-|+
T Consensus 10 F~~~LlvTGiSllgv~aAl~va~~vM~l~Gm~~--lviKLLPWL 51 (76)
T PRK09459 10 FFVMLLVTGISLLGIIAALGVATLVMFLGGMFA--LMIKLLPWL 51 (76)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 444556665555455555555555555555542 334455565
No 245
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=27.79 E-value=18 Score=30.14 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=20.2
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
-.|.+|..-+.+ ....-.|. |.|=..|+..-+. ..||+|+...
T Consensus 8 LrCs~C~~~l~~--pv~l~~Ce-----H~fCs~Ci~~~~~----~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKE--PVCLGGCE-----HIFCSSCIRDCIG----SECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS---B---SSS-------B-TTTGGGGTT----TB-SSS--B-
T ss_pred cCCcHHHHHhcC--CceeccCc-----cHHHHHHhHHhcC----CCCCCcCChH
Confidence 469999865542 23445698 9999999977443 3599999876
No 246
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.68 E-value=42 Score=39.47 Aligned_cols=46 Identities=24% Similarity=0.547 Sum_probs=29.4
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccc--ccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV--CKQDV 306 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpI--Cr~~~ 306 (508)
+-|.+|..... |.....-.|+ |.-|..|+.+||.. +..|+. |.+.-
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~-----H~gH~sh~~sw~~~--~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCG-----HGGHDSHLKSWFFK--ASPCAKSICPHLC 827 (839)
T ss_pred cCceeecceee-eeEeeccccc-----ccccHHHHHHHHhc--CCCCccccCCccc
Confidence 45777754332 1112222355 99999999999987 677877 76543
No 247
>PRK10352 nickel transporter permease NikB; Provisional
Probab=27.47 E-value=5.1e+02 Score=26.99 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=24.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhh---hhhhHHH-HHHHHHHHHHHHHHHHhhhhhc
Q 010537 371 ALAISLPFSCVLGLLSSMIASTM---VSRSYIW-AYASFQFAVVILFAHIFYSVLN 422 (508)
Q Consensus 371 AlaislPFs~vlgll~S~~as~m---v~r~y~W-~ya~~qF~lvvlf~h~fy~~~~ 422 (508)
|+++++.++..+|++++...... +.+.... .++.=.|.+.+++..+|...++
T Consensus 108 a~~~~~~lgi~lGi~aa~~~g~~~d~~~~~~~~~~~siP~f~l~illi~~f~~~l~ 163 (314)
T PRK10352 108 ALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQ 163 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455555555565555431110 0111111 2334457777777777765554
No 248
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=27.42 E-value=3e+02 Score=27.71 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=3.1
Q ss_pred hhHHHHH
Q 010537 396 RSYIWAY 402 (508)
Q Consensus 396 r~y~W~y 402 (508)
++++|++
T Consensus 6 ~~~~~~~ 12 (356)
T PRK10755 6 RRLLLTI 12 (356)
T ss_pred HHHHHHH
Confidence 3444443
No 249
>PLN00026 aquaporin NIP; Provisional
Probab=27.39 E-value=2e+02 Score=30.26 Aligned_cols=6 Identities=33% Similarity=1.021 Sum_probs=3.5
Q ss_pred cCCCCC
Q 010537 272 ECSCKG 277 (508)
Q Consensus 272 PC~CKG 277 (508)
.|+|-.
T Consensus 42 ~~~~~~ 47 (298)
T PLN00026 42 SCKCFP 47 (298)
T ss_pred cccccc
Confidence 377753
No 250
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=27.24 E-value=1.5e+02 Score=32.26 Aligned_cols=13 Identities=0% Similarity=-0.003 Sum_probs=6.2
Q ss_pred eechhhHHHHHhh
Q 010537 281 LAHKECAVKWFTI 293 (508)
Q Consensus 281 ~fH~~Cl~kWL~~ 293 (508)
.+..+=+...+..
T Consensus 241 iIt~~Dil~~l~~ 253 (449)
T TIGR00400 241 IVTVDDIIDVIQS 253 (449)
T ss_pred EEEHHHHHHHHHh
Confidence 3444455555543
No 251
>TIGR01726 HEQRo_perm_3TM amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family. This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.
Probab=27.23 E-value=3.8e+02 Score=22.80 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=19.4
Q ss_pred hhhhhhhhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHH
Q 010537 371 ALAISLPFSCVLGLLSSMI--ASTMVSRSYIWAYASFQFAVV 410 (508)
Q Consensus 371 AlaislPFs~vlgll~S~~--as~mv~r~y~W~ya~~qF~lv 410 (508)
+++++..+++++|++.... -...+.+.|++++-.+=+.+.
T Consensus 19 a~~~~~~~G~~l~~~~~~~~~~~~~~~~~~i~~~R~~P~lv~ 60 (99)
T TIGR01726 19 SILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQ 60 (99)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCchHHHH
Confidence 4444555555555554321 122344667777655444433
No 252
>PF11289 DUF3092: Protein of unknown function (DUF3092); InterPro: IPR024407 This family of SARS coronavirus proteins includes Orf3/3a, which form homotetrameric potassium sensitive ion channels (viroporin) and may modulate virus release. They have also been shown to up-regulate expression of fibrinogen subunits FGA, FGB and FGG in host lung epithelial cells [, , ].
Probab=27.15 E-value=4.4e+02 Score=27.11 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 428 AVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 428 ~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
-.|.+.++..-++-.+--++...+-||-+.
T Consensus 106 Lyl~aliy~lq~~~~~r~~~RcwLcwkC~S 135 (273)
T PF11289_consen 106 LYLYALIYFLQCVSFCRIIMRCWLCWKCKS 135 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 345555555555555666778888888544
No 253
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.03 E-value=5.1e+02 Score=28.78 Aligned_cols=12 Identities=42% Similarity=0.871 Sum_probs=6.4
Q ss_pred hhhHHHHHHHHH
Q 010537 347 LIMVSMLAYFCF 358 (508)
Q Consensus 347 LViismLayFcF 358 (508)
++.+.++++|+|
T Consensus 304 FI~LTF~~fflf 315 (430)
T PF06123_consen 304 FIGLTFLAFFLF 315 (430)
T ss_pred HHHHHHHHHHHH
Confidence 345556665544
No 254
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=26.97 E-value=24 Score=40.17 Aligned_cols=21 Identities=38% Similarity=0.844 Sum_probs=15.5
Q ss_pred cceechhhHHHHHhhhCCcccccccc
Q 010537 279 LALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 279 Lh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
++.||++| ++.+ +..||.|-.
T Consensus 538 ~avfH~~C----~~r~-s~~CPrC~R 558 (580)
T KOG1829|consen 538 LAVFHKKC----LRRK-SPCCPRCER 558 (580)
T ss_pred HHHHHHHH----Hhcc-CCCCCchHH
Confidence 39999999 4443 455999964
No 255
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=26.92 E-value=2.6e+02 Score=33.36 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHhHHHHHHhhhHHHH
Q 010537 422 NVNPILAVLLSSFTGFGIAISTNSLIV 448 (508)
Q Consensus 422 ~~~~v~~illa~f~gfg~~m~~n~~~~ 448 (508)
.+...+.+++..+. ||++|=-+-+++
T Consensus 800 ~l~~~~~~~~~~il-~glgvDY~I~l~ 825 (910)
T TIGR00833 800 ELHWSVLAGVFVLL-VALGVDYNMLLV 825 (910)
T ss_pred CcchhHHHHHHHHH-HHhhhchHHHHH
Confidence 34444544443332 555554443333
No 256
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.83 E-value=77 Score=29.64 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=13.4
Q ss_pred HHHHhhhCCccccccccccc
Q 010537 288 VKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 288 ~kWL~~kg~~tCpICr~~~~ 307 (508)
+..|+. ...|+.|+.+|.
T Consensus 34 ~gFLK~--~p~C~aCG~dyg 51 (126)
T COG5349 34 RGFLKV--VPACEACGLDYG 51 (126)
T ss_pred hhhccc--Cchhhhcccccc
Confidence 445565 678999999984
No 257
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=26.78 E-value=3.2e+02 Score=24.18 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhhhc
Q 010537 408 AVVILFAHIFYSVLN 422 (508)
Q Consensus 408 ~lvvlf~h~fy~~~~ 422 (508)
++.+++..+|+.+++
T Consensus 123 ~~~~~i~~~F~~~L~ 137 (141)
T PF07331_consen 123 VFAAVIYFVFAKLLG 137 (141)
T ss_pred HHHHHHHHHHHHHHC
Confidence 333333334444433
No 258
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=26.54 E-value=6.8e+02 Score=25.30 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHH
Q 010537 396 RSYIWAYASFQFAV 409 (508)
Q Consensus 396 r~y~W~ya~~qF~l 409 (508)
++-+++.+.+-+++
T Consensus 268 ~~~~~~~~~~~~~~ 281 (392)
T PRK10473 268 PRTLMLTSQVLFLA 281 (392)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555443333
No 259
>MTH00043 ND4L NADH dehydrogenase subunit 4L; Validated
Probab=26.40 E-value=4.3e+02 Score=22.96 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcch----hHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 010537 395 SRSYIWAYASFQFAVVILFAHIFYSVLNVN----PILAVLLSSFTGFGIAISTNSLIVEYLRWR 454 (508)
Q Consensus 395 ~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~----~v~~illa~f~gfg~~m~~n~~~~e~~~wr 454 (508)
+|..+++.-++||.+..++.-+++...... .++++.+-++++-..|++.. +++-+.|=+
T Consensus 23 r~~ll~~Ll~lE~m~l~l~l~~~~~~~~~~~~~~~~~~l~~L~~~vcEaalGLs-LLV~~~R~~ 85 (98)
T MTH00043 23 RLHLLSILLCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLS-LMVLLSRNH 85 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 455677778889987776655544433322 45677777777777777765 555444433
No 260
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=26.34 E-value=4.9e+02 Score=30.14 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=19.9
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHH
Q 010537 367 LGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAY 402 (508)
Q Consensus 367 lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~y 402 (508)
+-..+.++.+++.+.+|+|..+.- ..+ .++ |..
T Consensus 28 ~~~~~~~l~~~~~~~~glYr~vwR-~s~-~~~-~~i 60 (588)
T COG1086 28 LWSGAQLLTICVFILFGLYRAVWR-ASV-SDL-FII 60 (588)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHh-cch-HHH-HHH
Confidence 444455555667777888888765 333 344 443
No 261
>PF04138 GtrA: GtrA-like protein; InterPro: IPR007267 Members of this entry belong to the GtrA family and are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane []. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyses the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b) []. This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and Listeria monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose [].; GO: 0000271 polysaccharide biosynthetic process, 0006810 transport, 0016021 integral to membrane
Probab=26.25 E-value=1.2e+02 Score=26.04 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHHHHhhhhh
Q 010537 429 VLLSSFTGFGIAISTNSLIVEYLRWRMSRQM 459 (508)
Q Consensus 429 illa~f~gfg~~m~~n~~~~e~~~wr~~~~~ 459 (508)
..+|.+.++.+++..|+++-.+.-||.+...
T Consensus 28 ~~~A~~ia~~~~~~~~f~ln~~~tF~~~~~~ 58 (117)
T PF04138_consen 28 YLLANVIAFIVAIIFNFILNRRFTFRSRGRS 58 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 4556677888888889888888888866543
No 262
>PLN03211 ABC transporter G-25; Provisional
Probab=26.24 E-value=3.5e+02 Score=31.19 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhhcchh
Q 010537 405 FQFAVVILFAHIFYSVLNVNP 425 (508)
Q Consensus 405 ~qF~lvvlf~h~fy~~~~~~~ 425 (508)
+++...++|+-+.|-++++++
T Consensus 493 ~~~~~~~if~~i~Y~m~Gl~~ 513 (659)
T PLN03211 493 MELILPTIFLTVTYWMAGLKP 513 (659)
T ss_pred HHHHHHHHHHhheeEcCCCcC
Confidence 356666777777788877764
No 263
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=26.22 E-value=3.7e+02 Score=28.72 Aligned_cols=45 Identities=18% Similarity=0.092 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHH
Q 010537 403 ASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVE 449 (508)
Q Consensus 403 a~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e 449 (508)
+.+.-.+..++.++.+++++++...+++++|-+|-+| |+.+.+.+
T Consensus 225 ~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAI--cgpAAVaA 269 (312)
T PRK12460 225 GVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAV--ATPLAIAA 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHH--HHHHHHHH
Confidence 3444555566778888999999999999998777654 56555544
No 264
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.08 E-value=2.8e+02 Score=34.34 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=4.0
Q ss_pred hhcccchhh
Q 010537 364 VSDLGARAL 372 (508)
Q Consensus 364 v~~lg~~Al 372 (508)
...+|-.+.
T Consensus 628 ~~~lgr~~~ 636 (1109)
T PRK10929 628 SGTLGRLCF 636 (1109)
T ss_pred hccHHHHHH
Confidence 334455443
No 265
>PRK15099 O-antigen translocase; Provisional
Probab=26.07 E-value=7.6e+02 Score=25.68 Aligned_cols=8 Identities=13% Similarity=-0.280 Sum_probs=3.2
Q ss_pred hhhHHHHH
Q 010537 284 KECAVKWF 291 (508)
Q Consensus 284 ~~Cl~kWL 291 (508)
.+++++.+
T Consensus 211 ~~~~k~ll 218 (416)
T PRK15099 211 NGLAGQLG 218 (416)
T ss_pred HHHHHHHH
Confidence 34444433
No 266
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=25.90 E-value=2e+02 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHH
Q 010537 395 SRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAV 429 (508)
Q Consensus 395 ~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~i 429 (508)
.|-++|.|+. ++++++..-+.+.+++.=+|+..
T Consensus 9 ~~g~~~~~~~--~~~~~~~~a~~f~~~GaW~Vl~F 41 (140)
T PF10003_consen 9 PRGFLIFIAI--LAAVSLIIAIAFLLMGAWPVLPF 41 (140)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhchHHHHHH
Confidence 4567777665 34455555555556665454443
No 267
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=25.88 E-value=3.8e+02 Score=28.82 Aligned_cols=18 Identities=11% Similarity=0.179 Sum_probs=7.3
Q ss_pred HHHHHHhHHHHHHhhhHH
Q 010537 429 VLLSSFTGFGIAISTNSL 446 (508)
Q Consensus 429 illa~f~gfg~~m~~n~~ 446 (508)
++++.+.+|.+.++.-.+
T Consensus 96 ~~~~~~l~~~ll~~~R~~ 113 (451)
T TIGR03023 96 LLLWFLLALALLLLGRLI 113 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444443444433
No 268
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=25.84 E-value=7.1e+02 Score=25.78 Aligned_cols=8 Identities=38% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHhhhccc
Q 010537 361 QLLVSDLG 368 (508)
Q Consensus 361 qLLv~~lg 368 (508)
..+....|
T Consensus 280 ~~~~~~~g 287 (485)
T TIGR00711 280 LYLQQVLG 287 (485)
T ss_pred HHHHHhcC
Confidence 33433334
No 269
>PLN03140 ABC transporter G family member; Provisional
Probab=25.78 E-value=2.4e+02 Score=35.73 Aligned_cols=26 Identities=15% Similarity=0.338 Sum_probs=21.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhh
Q 010537 370 RALAISLPFSCVLGLLSSMIASTMVS 395 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~~as~mv~ 395 (508)
+-+++-+|+.++.+++.+++.+-|+.
T Consensus 1294 a~~l~eiP~~~~~~~if~~i~Y~m~G 1319 (1470)
T PLN03140 1294 AQVVCEIPYVLIQTTYYTLIVYAMVA 1319 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566689999999999998888875
No 270
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.60 E-value=1.5e+02 Score=26.00 Aligned_cols=9 Identities=0% Similarity=-0.067 Sum_probs=4.3
Q ss_pred HHHHhHHHH
Q 010537 431 LSSFTGFGI 439 (508)
Q Consensus 431 la~f~gfg~ 439 (508)
+.++.||.+
T Consensus 7 v~~~~~v~~ 15 (87)
T PF10883_consen 7 VGGVGAVVA 15 (87)
T ss_pred HHHHHHHHH
Confidence 344555544
No 271
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=25.35 E-value=43 Score=32.84 Aligned_cols=41 Identities=27% Similarity=0.598 Sum_probs=25.1
Q ss_pred CCcceecccccc----CCCceEEec-CCCCCccceechhhHHHHHhhhCCcccccccc
Q 010537 252 EAVCRICLVELG----EGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 252 e~~CrICl~e~e----e~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
+.+|-||..+.- +.+....-+ |+ ..||+.|..+ ..||-|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~-----~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCK-----SVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCc-----cccchhhcCC-------CCCCCcHh
Confidence 567888864310 112233333 55 9999999662 45999965
No 272
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=25.34 E-value=1.3e+02 Score=22.94 Aligned_cols=16 Identities=19% Similarity=0.750 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010537 398 YIWAYASFQFAVVILFAH 415 (508)
Q Consensus 398 y~W~ya~~qF~lvvlf~h 415 (508)
|||. ++-+.++++.+.
T Consensus 7 yVW~--sYg~t~l~l~~l 22 (45)
T TIGR03141 7 YVWL--AYGITALVLAGL 22 (45)
T ss_pred HHHH--HHHHHHHHHHHH
Confidence 5665 444444444443
No 273
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.25 E-value=2.2e+02 Score=33.41 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=18.5
Q ss_pred HHHhHHHHHHhhhHHHHHHHHHHhhhhhhhhh
Q 010537 432 SSFTGFGIAISTNSLIVEYLRWRMSRQMQSLH 463 (508)
Q Consensus 432 a~f~gfg~~m~~n~~~~e~~~wr~~~~~~~~~ 463 (508)
|=++|.-|++.|- -+..|+.||.|...|..-
T Consensus 156 ah~igypvv~~g~-~~~~y~~~~~~~r~q~~v 186 (697)
T PF09726_consen 156 AHCIGYPVVTLGF-GFKSYVSYRMRQRKQREV 186 (697)
T ss_pred HhhcCCceeEeec-cHHHHHHHHHHHHHHHHH
Confidence 4467777765554 456777777664444433
No 274
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=25.25 E-value=4.7e+02 Score=27.17 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.3
Q ss_pred hcchhHHHHHHHHHhHHHHHHh
Q 010537 421 LNVNPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 421 ~~~~~v~~illa~f~gfg~~m~ 442 (508)
++-.+.++|+++++.++|+.+.
T Consensus 89 ~~~D~aigiv~s~~~alGlvl~ 110 (274)
T COG1108 89 LKEDTAIGIVFSSGLALGLVLL 110 (274)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999998654
No 275
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=25.10 E-value=1.5e+02 Score=30.97 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=12.0
Q ss_pred cchhHHHHHHHHHhHHHHH
Q 010537 422 NVNPILAVLLSSFTGFGIA 440 (508)
Q Consensus 422 ~~~~v~~illa~f~gfg~~ 440 (508)
.++|++++.+-.+..++++
T Consensus 324 ~lpp~la~Wlp~i~~~~~~ 342 (366)
T PRK15120 324 KLDPMIWMWAVNLIYLALA 342 (366)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 4577777777665555554
No 276
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=25.09 E-value=2.6e+02 Score=31.04 Aligned_cols=17 Identities=12% Similarity=0.428 Sum_probs=6.7
Q ss_pred HhHHHHHHhhhHHHHHH
Q 010537 434 FTGFGIAISTNSLIVEY 450 (508)
Q Consensus 434 f~gfg~~m~~n~~~~e~ 450 (508)
++++.+.+.-.-+.+.|
T Consensus 224 iV~yatslvDaLLfiHY 240 (531)
T KOG3814|consen 224 IVQYATSLVDALLFIHY 240 (531)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444443333333333
No 277
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=24.97 E-value=5.1e+02 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh----hcchhHHHHHHHHHhHHHHHHh
Q 010537 400 WAYASFQFAVVILFAHIFYSV----LNVNPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 400 W~ya~~qF~lvvlf~h~fy~~----~~~~~v~~illa~f~gfg~~m~ 442 (508)
-.|+.+.+.++.....+.++. .+-..+......++.-|.+|+.
T Consensus 140 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~a~~ 186 (262)
T PF05875_consen 140 IAFASLVLLVILRSIYLIRRRVRDACRRRRARRLLLFGLALFLVAFF 186 (262)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhhchHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555553 3355555555555555555543
No 278
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.96 E-value=3.9e+02 Score=32.99 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.4
Q ss_pred ceeeccchhhhHHHHHHHH-HHHHHhh
Q 010537 339 RVWQDMPVLIMVSMLAYFC-FLEQLLV 364 (508)
Q Consensus 339 r~W~d~p~LViismLayFc-FLeqLLv 364 (508)
..|.+..+++|.++-+|++ |++.+|.
T Consensus 882 ~WWrnQq~w~I~~tSa~Lfavl~~iLK 908 (1044)
T PLN02915 882 DLWRNEQFWVIGGVSAHLFAVFQGLLK 908 (1044)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899888888888 6665543
No 279
>PLN02189 cellulose synthase
Probab=24.82 E-value=2.8e+02 Score=34.09 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=21.4
Q ss_pred eeeccchhhhHHHHHHHH-HHHHHhh
Q 010537 340 VWQDMPVLIMVSMLAYFC-FLEQLLV 364 (508)
Q Consensus 340 ~W~d~p~LViismLayFc-FLeqLLv 364 (508)
.|++..+++|.++-+|++ |++.+|.
T Consensus 881 WWrnQq~w~I~~~Sa~Lfavl~~ilK 906 (1040)
T PLN02189 881 WWRNEQFWVIGGVSAHLFAVVQGLLK 906 (1040)
T ss_pred HhhhhhHHHHhhhHHHHHHHHHHHHH
Confidence 588999999999999998 8777765
No 280
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=24.72 E-value=9.4e+02 Score=28.48 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHH---------------HHhhhhh-----hhHHHHH---HH
Q 010537 348 IMVSMLAYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSM---------------IASTMVS-----RSYIWAY---AS 404 (508)
Q Consensus 348 ViismLayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~---------------~as~mv~-----r~y~W~y---a~ 404 (508)
++..+...++++-.++....+. ......+++++|.+.|. +.+..++ +.+-+.| +.
T Consensus 46 ~i~~~~vi~~~ll~~~~~~~~~--~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~gl~~AL~vAfrgGaV 123 (682)
T PF03030_consen 46 TIAIFIVIVAILLFFLLGFLGG--QGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTRGLNKALQVAFRGGAV 123 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcCChHhHHHHHhcccch
Q ss_pred HHHHHH------HHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHH
Q 010537 405 FQFAVV------ILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVE 449 (508)
Q Consensus 405 ~qF~lv------vlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e 449 (508)
+.|.++ +.+.+++|...--..-..-+...+.|||++.+.-+++.+
T Consensus 124 mGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaR 174 (682)
T PF03030_consen 124 MGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFAR 174 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHH
No 281
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=24.58 E-value=3.5e+02 Score=33.31 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=13.5
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHHH
Q 010537 429 VLLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 429 illa~f~gfg~~m~~n~~~~e~~~ 452 (508)
+||+.+..+-+.|..|-.+..+.+
T Consensus 590 ILLlLYiiYVvvm~~n~~i~~~~~ 613 (1096)
T TIGR00927 590 LLLLAYALYVFTMKWNKQIELWVK 613 (1096)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344445556667777755554444
No 282
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=24.52 E-value=7.3e+02 Score=26.49 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhhhhcc----------hhHHHHHHHHHhHHHHHH
Q 010537 405 FQFAVVILFAHIFYSVLNV----------NPILAVLLSSFTGFGIAI 441 (508)
Q Consensus 405 ~qF~lvvlf~h~fy~~~~~----------~~v~~illa~f~gfg~~m 441 (508)
.|+.|-++.+-+.|+++-+ .|.++++++-+.++.+..
T Consensus 94 ~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~ 140 (371)
T PF10011_consen 94 TQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVV 140 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHH
Confidence 4666666666666766655 456666555555554433
No 283
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=24.48 E-value=1.1e+02 Score=26.46 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhhhcchh
Q 010537 404 SFQFAVVILFAHIFYSVLNVNP 425 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~~~~~~ 425 (508)
+-|.+++++.+.+|+--.+++.
T Consensus 51 aaQGsi~~fviLi~~Ya~~mnr 72 (81)
T PF13937_consen 51 AAQGSIIVFVILIFVYAWRMNR 72 (81)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 4477777666666554444443
No 284
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=24.43 E-value=3.3e+02 Score=33.24 Aligned_cols=85 Identities=18% Similarity=0.374 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHH-----HHHHHHHHHHhh
Q 010537 344 MPVLIMVSMLAYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQ-----FAVVILFAHIFY 418 (508)
Q Consensus 344 ~p~LViismLayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~q-----F~lvvlf~h~fy 418 (508)
+|++-.+.++.++|. .||-++|.+|..+ ...+.+-|+..+.-+| |+++.++.-++-
T Consensus 325 LP~m~svl~~i~ygl-----------------FPlV~llallp~~--g~~vLkgY~~~~iwLqlWppLfAIIN~~m~~~~ 385 (942)
T PRK13735 325 LPMMQTILMGIAIGI-----------------FPLLVLAAVFNKL--TLSVLKGYVFALMWLQSWPLLYAILNSAMTFYA 385 (942)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhcchhHHHHH---------HHHHhHHHHHHhhhHHHHHHHHH
Q 010537 419 SVLNVNPILAVL---------LSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 419 ~~~~~~~v~~il---------la~f~gfg~~m~~n~~~~e~~~w 453 (508)
..-....+|+-+ +++++|+-+ +.|=++.|
T Consensus 386 ~~~G~~~tLs~~~~i~~~~sdia~~aGyL~------msIP~LA~ 423 (942)
T PRK13735 386 KQNGAPVVLSELSQIQLKYSDLASTAGYLS------MMIPPLSW 423 (942)
T ss_pred hhcCccccchhhhHHHHHHHHHHHHHHHHH------HHHHHHHH
No 285
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=24.35 E-value=1.5e+02 Score=25.56 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 010537 400 WAYASFQFAVVILFAHIFYSV 420 (508)
Q Consensus 400 W~ya~~qF~lvvlf~h~fy~~ 420 (508)
|+|+..+|.+....+.+|-++
T Consensus 56 ~~~g~~~~~~~~~l~~~Yv~~ 76 (91)
T PF04341_consen 56 IVLGLGQIVFAWVLTWLYVRR 76 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666677776666666655443
No 286
>PRK11462 putative transporter; Provisional
Probab=24.34 E-value=5.8e+02 Score=27.35 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=6.3
Q ss_pred HHHHHHHHHh
Q 010537 446 LIVEYLRWRM 455 (508)
Q Consensus 446 ~~~e~~~wr~ 455 (508)
-.++|..|+.
T Consensus 345 d~~d~~e~~t 354 (460)
T PRK11462 345 DTVDYGEWCN 354 (460)
T ss_pred HhHhhhHHhc
Confidence 4567777764
No 287
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=24.28 E-value=1.3e+02 Score=35.55 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=61.5
Q ss_pred hccccccccccccccccccccccccCCCCeeEEee--cCCCccccccccCCCCCCCCcccccCCCCCCCCCCcceecccc
Q 010537 184 RTQQKMTRSFSVPVNIKVRSLRRTESGGGLIRVIS--VSTRSAAVERISVNDDPATDIATEEAGEDIPEEEAVCRICLVE 261 (508)
Q Consensus 184 ~~~~~i~RS~SvP~n~~~~s~rr~dS~gGl~RVvP--~sP~~~~~~~~~~~d~~~~~~~~e~~~e~~~eee~~CrICl~e 261 (508)
+.|..+.|-++.=---+.+-+++.|-.|+ .-||= +-|+..=++-..-...+-..+ ..+.....|.||.|+
T Consensus 55 esqeraarvrCeLCP~kdGALKkTDn~GW-AHVVCALYIPEVrFgNV~TMEPIiLq~V-------P~dRfnKtCYIC~E~ 126 (900)
T KOG0956|consen 55 ESQERAARVRCELCPHKDGALKKTDNGGW-AHVVCALYIPEVRFGNVHTMEPIILQDV-------PHDRFNKTCYICNEE 126 (900)
T ss_pred hhhhhhccceeecccCcccceecccCCCc-eEEEEEeeccceeecccccccceeeccC-------chhhhcceeeeeccc
Confidence 34445566554422246788999998764 44432 334332111111111111111 112345789999876
Q ss_pred ccCCC--ceEEecCCCCCccceechhhHHHH--H-h-----hhCCccccccccccccc
Q 010537 262 LGEGG--DMFKLECSCKGELALAHKECAVKW--F-T-----IKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 262 ~ee~e--~~l~LPC~CKGsLh~fH~~Cl~kW--L-~-----~kg~~tCpICr~~~~nv 309 (508)
-.+.. .---|.|+=.|.-.-||..|+..- | . ...-+.|-.|++-|..+
T Consensus 127 GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 127 GRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred CCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 43322 122466663333389999999764 1 1 11235899999988744
No 288
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=24.25 E-value=5e+02 Score=30.29 Aligned_cols=88 Identities=23% Similarity=0.245 Sum_probs=43.1
Q ss_pred HHhhhcccchhhhhhhhhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcc---------------
Q 010537 361 QLLVSDLGARALAISLPFSCVLGLLSSMI--ASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNV--------------- 423 (508)
Q Consensus 361 qLLv~~lg~~AlaislPFs~vlgll~S~~--as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~--------------- 423 (508)
.|++.+.-..+++...-+++.+|++.-|. ...|-.=.-+=+-.++.|+ |-+.+|+-|.+++-
T Consensus 663 ~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~v~l~~~iG~s-Vd~~~Hi~~~f~~~~~~~~~~r~~~al~~ 741 (798)
T PF02460_consen 663 LLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSMVNLIMSIGFS-VDFSAHIAYAFVHSQGSTRDERVAEALSS 741 (798)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHhchh-hHHHHHHHHHheecccchHHHHHHHHHHH
Confidence 34445555555555555555567666552 1111000111222233443 45666777766543
Q ss_pred --hhHHHHHHHHHhHHHHHHhhhHHHHH
Q 010537 424 --NPILAVLLSSFTGFGIAISTNSLIVE 449 (508)
Q Consensus 424 --~~v~~illa~f~gfg~~m~~n~~~~e 449 (508)
-||+.-.++|+.|+-+-+..++.+.+
T Consensus 742 ~g~pv~~~~~st~l~~~~l~f~~~~~~~ 769 (798)
T PF02460_consen 742 MGWPVLQGALSTFLGVLPLAFSPSYIFR 769 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34566667777766554444444443
No 289
>PLN02436 cellulose synthase A
Probab=24.15 E-value=4e+02 Score=33.02 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=21.0
Q ss_pred ceeeccchhhhHHHHHHHH-HHHHHh
Q 010537 339 RVWQDMPVLIMVSMLAYFC-FLEQLL 363 (508)
Q Consensus 339 r~W~d~p~LViismLayFc-FLeqLL 363 (508)
..|++..+++|.++-+|++ |++.+|
T Consensus 934 ~WWrnQq~w~I~~tSa~Lfavl~~iL 959 (1094)
T PLN02436 934 DWWRNEQFWVIGGVSSHLFALFQGLL 959 (1094)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3588899999999999998 877776
No 290
>PF03609 EII-Sor: PTS system sorbose-specific iic component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=24.06 E-value=2.9e+02 Score=27.95 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=15.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 010537 391 STMVSRSYIWAYASFQFAVVILF 413 (508)
Q Consensus 391 s~mv~r~y~W~ya~~qF~lvvlf 413 (508)
..|..|+| |.|..+.|.++..+
T Consensus 199 ~~~~~k~~-~~ff~~GF~l~~yl 220 (238)
T PF03609_consen 199 KMMWKKKY-IPFFFLGFVLAAYL 220 (238)
T ss_pred HHHhhchH-HHHHHHHHHHHHHH
Confidence 33555665 99988888887665
No 291
>PF13726 Na_H_antiport_2: Na+-H+ antiporter family
Probab=24.04 E-value=93 Score=27.45 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=17.9
Q ss_pred HHhhhhhcchhHHHHHHHHHhH
Q 010537 415 HIFYSVLNVNPILAVLLSSFTG 436 (508)
Q Consensus 415 h~fy~~~~~~~v~~illa~f~g 436 (508)
-+.-+++|++.++++++++++|
T Consensus 10 m~~L~LlR~nVvlalliaalvg 31 (88)
T PF13726_consen 10 MIVLSLLRVNVVLALLIAALVG 31 (88)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3445778899999999999875
No 292
>PRK10952 glycine betaine transporter membrane protein; Provisional
Probab=23.97 E-value=9e+02 Score=25.94 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=8.9
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q 010537 370 RALAISLPFSCVLGLLSSM 388 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~ 388 (508)
.+.++++.+++.+|++++.
T Consensus 155 ~a~lislliGi~lGil~a~ 173 (355)
T PRK10952 155 TALLFCIVIGLPLGIWLAR 173 (355)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444455555544443
No 293
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=23.96 E-value=2.7e+02 Score=30.80 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhhh-----cchhHHHHHHHHHhHHHHHHhhhHHHHHH
Q 010537 406 QFAVVILFAHIFYSVL-----NVNPILAVLLSSFTGFGIAISTNSLIVEY 450 (508)
Q Consensus 406 qF~lvvlf~h~fy~~~-----~~~~v~~illa~f~gfg~~m~~n~~~~e~ 450 (508)
|++||-+-..+||-++ |..=.+|-|+|+++|-++ |++|++.
T Consensus 327 QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~l----~~~YL~a 372 (443)
T COG4452 327 QYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLAGALL----NGIYLQA 372 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHH----HHHHHHH
Confidence 4444444444455443 555566666666665432 4455544
No 294
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.90 E-value=4.5e+02 Score=29.18 Aligned_cols=52 Identities=23% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHH
Q 010537 382 LGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFG 438 (508)
Q Consensus 382 lgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg 438 (508)
+++++.-.++.+-.+++-+.++. +...+--+.|.++.++ =+|.|+.+..-|+
T Consensus 363 i~Li~~Y~~~vl~~~k~~~~~~~----~L~~LY~~Ly~lLq~E-dyALL~GSl~LF~ 414 (430)
T PF06123_consen 363 IGLISLYLSSVLKSWKRGLIFAG----LLAALYGFLYVLLQSE-DYALLMGSLLLFI 414 (430)
T ss_pred HHHHHHHHHHHHhcchHHHHHHH----HHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 34444444455555555444333 2333333345566653 2444444444443
No 295
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=23.83 E-value=7.3e+02 Score=24.67 Aligned_cols=93 Identities=29% Similarity=0.426 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHhhhcccch-hhhhhhhhHHHH-HHHHHHHHhh--hhh--hh---HHHHH-HHHHHHHHHHHHHHhh
Q 010537 349 MVSMLAYFCFLEQLLVSDLGAR-ALAISLPFSCVL-GLLSSMIAST--MVS--RS---YIWAY-ASFQFAVVILFAHIFY 418 (508)
Q Consensus 349 iismLayFcFLeqLLv~~lg~~-AlaislPFs~vl-gll~S~~as~--mv~--r~---y~W~y-a~~qF~lvvlf~h~fy 418 (508)
.++++.|+ ++.-+|.+ .+ ++.-++ ||.+|. |.+ |++ |+ ....| +.+..+-+++|..+..
T Consensus 5 ~isf~gYi------a~r~~G~r~Gl----~ltg~~GGlvSST-A~t~~la~~~r~~p~~~~~~~~~i~lA~~~m~~R~l~ 73 (211)
T PF13194_consen 5 GISFAGYI------AVRLLGPRRGL----LLTGLLGGLVSST-ATTVSLARRSRENPELSRLLAAGILLASAVMFVRVLL 73 (211)
T ss_pred hhhHHHHH------HHHHHcccchH----HHHHHHHHHHHHH-HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666 44445554 43 333333 444443 333 433 22 22333 4445666666666555
Q ss_pred hhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHh
Q 010537 419 SVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRM 455 (508)
Q Consensus 419 ~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~ 455 (508)
-..-+++=+...|. .-|++ |..-.++.-+.-||+
T Consensus 74 iv~i~~~~l~~~l~--~p~~~-~~~~~~~~a~~~~r~ 107 (211)
T PF13194_consen 74 IVAILNPALLRSLA--LPLLA-MALVGLLAALLLWRR 107 (211)
T ss_pred HHHHHhHHHHHHHH--HHHHH-HHHHHHHHHHHHHHh
Confidence 55555553333222 22333 222233444444877
No 296
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=23.81 E-value=5.2e+02 Score=26.31 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=11.1
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q 010537 370 RALAISLPFSCVLGLLSSM 388 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~ 388 (508)
..+...+|+++.+|.+..+
T Consensus 54 ~~l~~~lP~~~lia~~~~l 72 (354)
T PF03739_consen 54 YILSLILPLAFLIAVLLTL 72 (354)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655554
No 297
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=23.76 E-value=3.8e+02 Score=29.70 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHH-hhhhhcchhHHHHHHHHHhHHHHHHhhhHHH
Q 010537 404 SFQFAVVILFAHI-FYSVLNVNPILAVLLSSFTGFGIAISTNSLI 447 (508)
Q Consensus 404 ~~qF~lvvlf~h~-fy~~~~~~~v~~illa~f~gfg~~m~~n~~~ 447 (508)
++|.++.++|++. -|+.+.-+=--+++.++..|||.+-+-+++.
T Consensus 314 ~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAia 358 (404)
T COG0786 314 AVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIA 358 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHH
Confidence 4566666666542 3555665666678888999999998888664
No 298
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=23.75 E-value=32 Score=41.80 Aligned_cols=51 Identities=35% Similarity=0.608 Sum_probs=31.0
Q ss_pred CCCCcceeccccccCCCceEEecCC-CCCccceechhhHHHHHhhhCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~-CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~ 304 (508)
+++..|-||++....+- ..++-|- |+ -.||.+|...=+..-|...|--|-+
T Consensus 217 ~~D~~C~iC~~~~~~n~-n~ivfCD~Cn---l~VHq~Cygi~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNS-NVIVFCDGCN---LAVHQECYGIPFIPEGQWLCRRCLQ 268 (1051)
T ss_pred CCCccceeecccccCCC-ceEEEcCCCc---chhhhhccCCCCCCCCcEeehhhcc
Confidence 46789999997755432 3344443 33 8899999883333334445555544
No 299
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=23.66 E-value=3.9e+02 Score=31.48 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHHhhhHH
Q 010537 429 VLLSSFTGFGIAISTNSL 446 (508)
Q Consensus 429 illa~f~gfg~~m~~n~~ 446 (508)
-++.++.|..++...+++
T Consensus 482 Rvl~tLLGi~iA~la~~l 499 (683)
T PRK11427 482 RALGILIGTVVSAVIYTF 499 (683)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456677777777666644
No 300
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.39 E-value=3.7e+02 Score=24.72 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.1
Q ss_pred HHHHHHHhHHHHHHhhhHH
Q 010537 428 AVLLSSFTGFGIAISTNSL 446 (508)
Q Consensus 428 ~illa~f~gfg~~m~~n~~ 446 (508)
-=++.++.|.++++..|.+
T Consensus 122 ~r~l~t~iG~~va~lVN~~ 140 (141)
T PF06081_consen 122 NRVLLTLIGIGVALLVNLL 140 (141)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467889999999999864
No 301
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=23.30 E-value=3.7e+02 Score=22.64 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=27.6
Q ss_pred HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHH
Q 010537 358 FLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWA 401 (508)
Q Consensus 358 FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ 401 (508)
|+..|++.....-++..++-+++++.++.++.+ ++.+-..|+
T Consensus 10 F~~~Ll~TGvsllgv~aA~~va~~vm~l~Gm~~--lviKLLPWL 51 (65)
T PF09583_consen 10 FFAMLLVTGVSLLGVLAALAVAFAVMFLGGMFG--LVIKLLPWL 51 (65)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 455667776666666667777777777777763 344566676
No 302
>PLN03140 ABC transporter G family member; Provisional
Probab=23.24 E-value=1.7e+02 Score=36.96 Aligned_cols=25 Identities=12% Similarity=0.289 Sum_probs=18.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhhh
Q 010537 371 ALAISLPFSCVLGLLSSMIASTMVS 395 (508)
Q Consensus 371 AlaislPFs~vlgll~S~~as~mv~ 395 (508)
.+...+|+.++..++.+++.+-|+.
T Consensus 617 ~~l~~iP~~~i~~~if~~I~Y~m~G 641 (1470)
T PLN03140 617 TFLLGIPISIIESVVWVVITYYSIG 641 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 3455678888888888887777765
No 303
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=23.20 E-value=4.5e+02 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=9.7
Q ss_pred HHHHHhHHHHHHhhhHHHHHHHH
Q 010537 430 LLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 430 lla~f~gfg~~m~~n~~~~e~~~ 452 (508)
+++.+..|.+.+..-.++..+.+
T Consensus 94 ~~~~~l~~~ll~~~R~~~r~~~~ 116 (445)
T TIGR03025 94 LLWFLLALVLLLLWRLLLRRLLR 116 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 304
>PF15013 CCSMST1: CCSMST1 family
Probab=23.19 E-value=52 Score=28.33 Aligned_cols=20 Identities=45% Similarity=1.001 Sum_probs=13.3
Q ss_pred eeeccch-hhhHHHHHHHHHH
Q 010537 340 VWQDMPV-LIMVSMLAYFCFL 359 (508)
Q Consensus 340 ~W~d~p~-LViismLayFcFL 359 (508)
-|+-.|+ +-++.+|.|||||
T Consensus 30 Wyq~~~is~sl~~fliyFC~l 50 (77)
T PF15013_consen 30 WYQVYPISLSLAAFLIYFCFL 50 (77)
T ss_pred ceeeehhHHHHHHHHHHHhhc
Confidence 4555554 4556778899974
No 305
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=23.11 E-value=1.1e+02 Score=32.67 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 402 YASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 402 ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
|.+.-..|.....+++|.--..+..++.++.-|..-||+..+-+++.-|+.|+..+
T Consensus 20 y~~~~~~~~~~i~~~~~~~~~~q~~~~~~~p~l~~~~I~~~~~~~~~~y~~~~~~r 75 (328)
T KOG2846|consen 20 YTSDLYIFTSQIHQLDYAPEKSQSILSQWQPNLGFPGIILTVRRLSYTYFEYRLNR 75 (328)
T ss_pred hhHHHHHHHHHHHhhhccCchhHHHHHHHHHHhcchHHHHHHHHHHHhhhheeccc
Confidence 34444444555667777777788888888888888888888888888888888644
No 306
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=23.09 E-value=8.4e+02 Score=25.31 Aligned_cols=15 Identities=20% Similarity=0.707 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhcccc
Q 010537 355 YFCFLEQLLVSDLGA 369 (508)
Q Consensus 355 yFcFLeqLLv~~lg~ 369 (508)
|+-++.+++..|+|.
T Consensus 65 y~~~l~~~~~gd~G~ 79 (306)
T PRK15081 65 FWHYISNALQGDFGT 79 (306)
T ss_pred HHHHHHHHhccCCcc
Confidence 444556666666665
No 307
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.07 E-value=3.7e+02 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=7.7
Q ss_pred HHHHHhHHHHHHhhhH
Q 010537 430 LLSSFTGFGIAISTNS 445 (508)
Q Consensus 430 lla~f~gfg~~m~~n~ 445 (508)
+.++|++|-|+-.+-|
T Consensus 108 f~asfa~FlvtWIi~Y 123 (129)
T KOG3415|consen 108 FMASFALFLVTWIIFY 123 (129)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555444443
No 308
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=23.07 E-value=2.8e+02 Score=28.43 Aligned_cols=62 Identities=21% Similarity=0.037 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-hhhhhcch-hHHHHHHHHHhHHHHHHhhhHHHHHHHH--HHhh
Q 010537 395 SRSYIWAYASFQFAVVILFAHI-FYSVLNVN-PILAVLLSSFTGFGIAISTNSLIVEYLR--WRMS 456 (508)
Q Consensus 395 ~r~y~W~ya~~qF~lvvlf~h~-fy~~~~~~-~v~~illa~f~gfg~~m~~n~~~~e~~~--wr~~ 456 (508)
+|...|+|+.+-...-.+.+.+ +|.+-..+ +++..+|+...|.-+-+..--++-|..+ +..+
T Consensus 178 s~~~~l~~~~lsg~~~~lgavig~~~~~~~~~~~l~~~la~aaG~mv~v~~~eliPea~~~~~~~~ 243 (266)
T COG0428 178 SRLKALLVAVLSGLAEPLGAVIGAYLLGISSPLVLPFALAFAAGAMVYVVVDELLPEAKRHGGGSE 243 (266)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHhhcchhhhHHHHhhHHHhcCCCch
Confidence 3434455555444443444443 66666666 8999999999999998888888888777 5443
No 309
>PHA03237 envelope glycoprotein M; Provisional
Probab=22.94 E-value=6e+02 Score=28.33 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=27.1
Q ss_pred cchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 422 NVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 422 ~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
+++.-.++.|+-++-+.++|.+==+..-|+-=|+++
T Consensus 323 ~l~~~v~~~Laviail~l~m~vvRlvRa~~yHr~~~ 358 (424)
T PHA03237 323 NLRLACKLVLAIFAVIIVIMLVVRLVRACLYHRRRS 358 (424)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788889999999999988876666665555544
No 310
>MTH00125 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=22.93 E-value=5.1e+02 Score=22.56 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=38.0
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcch----hHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 010537 387 SMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVN----PILAVLLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 387 S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~----~v~~illa~f~gfg~~m~~n~~~~e~~~ 452 (508)
++.+...-+|.++.+.-++||.+..++.-+++.....+ ..+++.+-+++.--.|+... +++-+.|
T Consensus 15 gl~~~~~~r~~ll~~Ll~lE~m~l~~~l~~~~~~~~~~~~~~~~~~l~~L~~~vcEaalGLs-lLV~~~R 83 (98)
T MTH00125 15 SLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLA-LLVATTR 83 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33333334567778888899887766665555444432 24566666666666666555 4444443
No 311
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.65 E-value=7.6e+02 Score=24.46 Aligned_cols=33 Identities=9% Similarity=0.238 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHH
Q 010537 409 VVILFAHIFYSVLNVNPILAVLLSSFTGFGIAI 441 (508)
Q Consensus 409 lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m 441 (508)
++++++-+|..+.--+.+|+++++-+-++++.+
T Consensus 118 l~~~~~Tly~al~~ks~iLtllf~ilq~laliw 150 (175)
T KOG2887|consen 118 LATMVLTLYVALWLKSKILTLLFCILQVLALIW 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555888888877777666543
No 312
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=22.45 E-value=5.2e+02 Score=25.58 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=8.2
Q ss_pred HHHHHHHHHhHHHHHHh
Q 010537 426 ILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 426 v~~illa~f~gfg~~m~ 442 (508)
+..+.+++..+-.+...
T Consensus 172 ~~g~~~~~~~~~~~~~~ 188 (342)
T TIGR00797 172 IVGAALATVISYWLMFL 188 (342)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 34455555555544333
No 313
>PRK10404 hypothetical protein; Provisional
Probab=22.30 E-value=78 Score=28.21 Aligned_cols=30 Identities=7% Similarity=0.043 Sum_probs=25.1
Q ss_pred HHhhhhhcchhHHHHHHHHHhHHHHHHhhh
Q 010537 415 HIFYSVLNVNPILAVLLSSFTGFGIAISTN 444 (508)
Q Consensus 415 h~fy~~~~~~~v~~illa~f~gfg~~m~~n 444 (508)
.-...|||=+|.-+|-+++-+||-++++++
T Consensus 70 ~~td~yV~e~Pw~avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 70 YRADDYVHEKPWQGIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999988754
No 314
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=22.26 E-value=2.2e+02 Score=31.05 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=9.3
Q ss_pred Ccccccccccc
Q 010537 296 NKTCDVCKQDV 306 (508)
Q Consensus 296 ~~tCpICr~~~ 306 (508)
...||-|++..
T Consensus 33 ~a~CpRCg~~L 43 (403)
T TIGR00155 33 KAACPRCGTTL 43 (403)
T ss_pred eeECCCCCCCC
Confidence 56899999987
No 315
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=22.26 E-value=41 Score=38.99 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=36.0
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
..|.||++ .+...+.+|. |.+=.+|+.+-+.......||+|+.....
T Consensus 455 ~~c~ic~~----~~~~~it~c~-----h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCG-----HDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc----cccceeeccc-----chHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 57999986 3567888999 77777777666666656689999998864
No 316
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.17 E-value=3.2e+02 Score=33.79 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.9
Q ss_pred eeeccchhhhHHHHHHHH-HHHHHhh
Q 010537 340 VWQDMPVLIMVSMLAYFC-FLEQLLV 364 (508)
Q Consensus 340 ~W~d~p~LViismLayFc-FLeqLLv 364 (508)
-|++..+|+|.++-+|++ |++.+|.
T Consensus 919 WWrnQr~w~I~~tSa~lfavl~~iLK 944 (1079)
T PLN02638 919 WWRNEQFWVIGGVSAHLFAVFQGLLK 944 (1079)
T ss_pred HhhhhhheehhhhHHHHHHHHHHHHH
Confidence 588999999999999998 8777654
No 317
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=22.05 E-value=4.9e+02 Score=31.27 Aligned_cols=55 Identities=9% Similarity=0.009 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHhh----hhhcchhHH
Q 010537 373 AISLPFSCVLGLLSSMIAS-TMVSRSYIWAYASFQFAVVILFAHIFY----SVLNVNPIL 427 (508)
Q Consensus 373 aislPFs~vlgll~S~~as-~mv~r~y~W~ya~~qF~lvvlf~h~fy----~~~~~~~v~ 427 (508)
++.+-|+=++-+|...+.. .+...++.|.+..+.+++.+++.++=| .++++.|+-
T Consensus 811 f~~l~~~q~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~ 870 (903)
T PRK15122 811 FIEGLLSQTLVVHMLRTQKIPFIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLP 870 (903)
T ss_pred HHHHHHHHHHHHHhhCcCCCCcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCC
Confidence 3334444344444444321 122334566666656655555555433 455555543
No 318
>PF14068 YuiB: Putative membrane protein
Probab=22.05 E-value=87 Score=28.35 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHhHHHHHHhhhHHHH
Q 010537 423 VNPILAVLLSSFTGFGIAISTNSLIV 448 (508)
Q Consensus 423 ~~~v~~illa~f~gfg~~m~~n~~~~ 448 (508)
+|.+++++|.-+..|||+-..|-++.
T Consensus 1 ~qliIs~~LFfVlfFGIGFiLNMLLr 26 (102)
T PF14068_consen 1 LQLIISMVLFFVLFFGIGFILNMLLR 26 (102)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999999996653
No 319
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=21.90 E-value=3.8e+02 Score=32.45 Aligned_cols=44 Identities=20% Similarity=0.498 Sum_probs=21.9
Q ss_pred hhcccchhhhhhhhhHHHHHHHHHH----HHhhhhhhhHHHHHHHHHH
Q 010537 364 VSDLGARALAISLPFSCVLGLLSSM----IASTMVSRSYIWAYASFQF 407 (508)
Q Consensus 364 v~~lg~~AlaislPFs~vlgll~S~----~as~mv~r~y~W~ya~~qF 407 (508)
+.++++..|-+..|--|.+.+...| +-..+-.|-|.|.-++.-|
T Consensus 100 av~~rs~fi~~~~~slc~lslv~~mf~~ft~~~lY~rhy~~TS~~~tl 147 (1318)
T KOG3618|consen 100 AVHMRSRFIVMVAPSLCFLSLVCVMFFLFTFTKLYARHYAWTSLALTL 147 (1318)
T ss_pred eeccCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455554444444444444444443 2334556777776544433
No 320
>COG2855 Predicted membrane protein [Function unknown]
Probab=21.88 E-value=4.9e+02 Score=28.14 Aligned_cols=96 Identities=23% Similarity=0.341 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHH----HhhhhhhhHHHHH---------------------
Q 010537 348 IMVSMLAYFCFLEQLLVSDLGARALAISLPFSCVLGLLSSMI----ASTMVSRSYIWAY--------------------- 402 (508)
Q Consensus 348 ViismLayFcFLeqLLv~~lg~~AlaislPFs~vlgll~S~~----as~mv~r~y~W~y--------------------- 402 (508)
.++..++|.+ -......+++..|+.+++-++.++|.|...- +..-.+++|+-=|
T Consensus 17 ~~ia~~a~~l-~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~ 95 (334)
T COG2855 17 ALIAGLAMLL-GAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSG 95 (334)
T ss_pred HHHHHHHHHH-hchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccH
Confidence 3344444443 2223556677788888888888888665542 2222233343222
Q ss_pred ---HHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHH
Q 010537 403 ---ASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIV 448 (508)
Q Consensus 403 ---a~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~ 448 (508)
.........+|+++.=+++++..=+++|. |-|.++||++-+.
T Consensus 96 v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Li----a~GssICGasAia 140 (334)
T COG2855 96 VLIIAITLSSTFLFAYFLGKLLGLDKKLALLI----AAGSSICGASAIA 140 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH----HccchhhHHHHHH
Confidence 12234445556666667788877777654 4577788887654
No 321
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=21.87 E-value=7.1e+02 Score=26.22 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=23.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhh---hhhHH-HHHHHHHHHHHHHHHHHhhhhhcc
Q 010537 371 ALAISLPFSCVLGLLSSMIASTMV---SRSYI-WAYASFQFAVVILFAHIFYSVLNV 423 (508)
Q Consensus 371 AlaislPFs~vlgll~S~~as~mv---~r~y~-W~ya~~qF~lvvlf~h~fy~~~~~ 423 (508)
|+.+++.++..+|++++..-.... .+.+. -.++.=.|.+.+++..+|...++.
T Consensus 106 a~~l~~~igi~lG~~aa~~~~~~~D~~i~~~~~~~~siP~F~la~lli~~fa~~l~~ 162 (339)
T PRK10914 106 AMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNL 162 (339)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 445555555556666654211110 01111 122333566666666666555543
No 322
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=21.87 E-value=97 Score=25.63 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHH
Q 010537 407 FAVVILFAHIFYSVLNVNPILAVLLSSFTGFGI 439 (508)
Q Consensus 407 F~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~ 439 (508)
|+++++.+.+.|.+..-.|-..=|+.+|++|-+
T Consensus 20 fg~lv~agil~~~vy~dr~yv~~lf~~fa~~c~ 52 (60)
T PF10841_consen 20 FGALVMAGILIYCVYLDRPYVPELFMTFAIFCG 52 (60)
T ss_pred HHHHHHHHHHHhheeeCCCCcHHHHHHHHHHHc
Confidence 467888899999999999988999999988755
No 323
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=21.83 E-value=5.3e+02 Score=28.19 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHH-HHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHH
Q 010537 403 ASFQFAVVILFA-HIFYSVLNVNPILAVLLSSFTGFGIAISTNSLI 447 (508)
Q Consensus 403 a~~qF~lvvlf~-h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~ 447 (508)
...|..+.++++ .+.|+++.-+==-+|+-|++.|||++.+-|.+.
T Consensus 310 l~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaia 355 (398)
T TIGR00210 310 LLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIA 355 (398)
T ss_pred HHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHH
Confidence 455777777555 456666766644578888999999999998764
No 324
>PHA03242 envelope glycoprotein M; Provisional
Probab=21.76 E-value=5.9e+02 Score=28.41 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=28.6
Q ss_pred hhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhhh
Q 010537 419 SVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMSR 457 (508)
Q Consensus 419 ~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~~ 457 (508)
.+=++++-..+.|+-+.-+.++|.+==+..-|+-=|+++
T Consensus 317 ~~~~~~~~i~~~Laviail~l~~~vvRlvRa~~yHr~~~ 355 (428)
T PHA03242 317 QWPGAQTGVRVALALVALFALAMAVLRLVRAYLYHRRHR 355 (428)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667788899999999999998876666665555544
No 325
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.67 E-value=4e+02 Score=31.91 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-----hhhcchhHHHHHHHHHhHHHHHHhhhHHHH
Q 010537 396 RSYIWAYASFQFAVVILFAHIFY-----SVLNVNPILAVLLSSFTGFGIAISTNSLIV 448 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~h~fy-----~~~~~~~v~~illa~f~gfg~~m~~n~~~~ 448 (508)
-.++|-|..+.=+++.++.+++= .+.+.+.+|.+++.+...|+|...+-.+++
T Consensus 615 G~~v~~f~~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~ 672 (798)
T KOG3599|consen 615 GNQVSDFRTFVASIVTLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFV 672 (798)
T ss_pred CCccCChHHHHHHHHHHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666566666555443 456788999998877776666544333443
No 326
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=21.59 E-value=1.3e+02 Score=34.84 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=12.9
Q ss_pred cccccccCCcCccccccCCc
Q 010537 92 KSSVRSLLPQRSFKAKNIAH 111 (508)
Q Consensus 92 ~ss~r~llp~~sfk~~~~~~ 111 (508)
...+|..|++-..+++.-..
T Consensus 156 ~~~~r~~lr~~~i~~~~~~~ 175 (604)
T PRK12933 156 VDSVRQFLREQRIRGVSVRL 175 (604)
T ss_pred HHHHHHHHHhCCCceeeEEe
Confidence 45567888877777665433
No 327
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=21.53 E-value=1.5e+02 Score=35.65 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 010537 404 SFQFAVVILFAHIFYSVLNVNPILAVLLSS 433 (508)
Q Consensus 404 ~~qF~lvvlf~h~fy~~~~~~~v~~illa~ 433 (508)
.+.+++|++|..+||++..+-+++++++..
T Consensus 379 iig~ilV~l~m~lfyr~~glia~ial~~~v 408 (855)
T PRK14726 379 LIAAILVAALMIGFYGFLGVIAVIALIVNV 408 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555566655555555444433
No 328
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=21.51 E-value=1.9e+02 Score=36.36 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Q 010537 400 WAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWR 454 (508)
Q Consensus 400 W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr 454 (508)
++.|.+-..+.++++..++.+++..--+.-+.+-++.+|+++=-|-++.|..+=.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREE 988 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREE 988 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHH
Confidence 3333433334444444555555555555555555556666666665555555433
No 329
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=21.48 E-value=3.5e+02 Score=23.87 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHHHhh
Q 010537 428 AVLLSSFTGFGIAIST 443 (508)
Q Consensus 428 ~illa~f~gfg~~m~~ 443 (508)
++++.-+.|+.++...
T Consensus 74 ~i~~t~~vgvs~glPL 89 (97)
T PF11196_consen 74 YIVLTFFVGVSFGLPL 89 (97)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444334555554443
No 330
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.47 E-value=9.8e+02 Score=27.39 Aligned_cols=53 Identities=17% Similarity=0.327 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHH
Q 010537 396 RSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLR 452 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~ 452 (508)
|+.++..+..|+++..+++..+..++++.. ..|-+.|++++++..++.++.++
T Consensus 84 ~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~----~~al~ig~~la~SStaiv~~~L~ 136 (621)
T PRK03562 84 RRSIFGGGALQMVACGGLLGLFCMLLGLRW----QVALLIGLGLALSSTAIAMQAMN 136 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888777666655555555443 34566778888777777666554
No 331
>KOG3188 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.42 E-value=1.6e+02 Score=30.12 Aligned_cols=62 Identities=21% Similarity=0.478 Sum_probs=36.0
Q ss_pred hhhhhhhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH------------HHhHHH
Q 010537 372 LAISLPFSCVLGLLSSMI-ASTMVSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLS------------SFTGFG 438 (508)
Q Consensus 372 laislPFs~vlgll~S~~-as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa------------~f~gfg 438 (508)
+..=+||-.++-+=+=.. +..+..-.--|+-.+ ...|..+++|..||+.+|. ..+|||
T Consensus 137 v~~kvPFPLTlrFK~MlQ~Gi~l~~LDv~wVSS~---------SWYFLnvfGLrsiysLiLG~~Naadq~~~~~~M~G~~ 207 (246)
T KOG3188|consen 137 VTTKVPFPLTLRFKSMLQRGIDLQDLDVSWVSSA---------SWYFLNVFGLRSIYSLILGEENAADQTQAMMDMTGFA 207 (246)
T ss_pred HHhcCCchhHHHHHHHHHcCchhhhcchhHhhhh---------HHHHHHHhhhHHHHHHHhcccccccHHHHHHHhcccc
Confidence 344578887776544331 333333344455333 2345556667788887765 477888
Q ss_pred HHHh
Q 010537 439 IAIS 442 (508)
Q Consensus 439 ~~m~ 442 (508)
++|.
T Consensus 208 ~~~p 211 (246)
T KOG3188|consen 208 MAMP 211 (246)
T ss_pred cCCc
Confidence 8776
No 332
>COG4758 Predicted membrane protein [Function unknown]
Probab=21.35 E-value=6e+02 Score=26.22 Aligned_cols=6 Identities=33% Similarity=0.622 Sum_probs=2.3
Q ss_pred HHHHHH
Q 010537 351 SMLAYF 356 (508)
Q Consensus 351 smLayF 356 (508)
.+++.|
T Consensus 9 ~Ii~If 14 (235)
T COG4758 9 FIIAIF 14 (235)
T ss_pred HHHHHH
Confidence 333433
No 333
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=21.34 E-value=6.7e+02 Score=26.04 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=11.1
Q ss_pred cchhhhhhhhhHHH
Q 010537 368 GARALAISLPFSCV 381 (508)
Q Consensus 368 g~~AlaislPFs~v 381 (508)
...|+++++|++.+
T Consensus 93 ~e~AialAvPvgll 106 (267)
T PRK09757 93 AKTAIGLGLPFSLL 106 (267)
T ss_pred HHHHHHHHHHHHHH
Confidence 34799999999844
No 334
>PRK04164 hypothetical protein; Provisional
Probab=21.33 E-value=4.1e+02 Score=25.87 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHHhHHHHHHhhhHHHHHHHHHH
Q 010537 431 LSSFTGFGIAISTNSLIVEYLRWR 454 (508)
Q Consensus 431 la~f~gfg~~m~~n~~~~e~~~wr 454 (508)
+|=-.|||+++.+.+.+.++..=.
T Consensus 68 ~aYa~Gf~~g~~Vg~~ied~l~~G 91 (181)
T PRK04164 68 IAYALGFAVGIYVGMKIEEKLALG 91 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566789999999999999887544
No 335
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.28 E-value=29 Score=36.70 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=34.1
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccc-cccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCD-VCKQDVQNLP 310 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCp-ICr~~~~nvp 310 (508)
..|+||+....+++..+---|- ..+|.-|+--=-.-+|...|+ -|....-+.+
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CD-----RG~HT~CVGL~~lP~G~WICD~~C~~~~~~t~ 368 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCD-----RGPHTLCVGLQDLPRGEWICDMRCREATLNTT 368 (381)
T ss_pred HhhhccCCcccchheecccccc-----CCCCccccccccccCccchhhhHHHHhcCCCC
Confidence 5788998776555433333355 789999986444455677888 4766654443
No 336
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=21.25 E-value=1.3e+02 Score=33.74 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=45.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 010537 370 RALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAHIFYSVLN 422 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h~fy~~~~ 422 (508)
.+..+...++-++|-+.+....+....+|+|.++...+..+++...+||..+.
T Consensus 427 g~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~r~~ 479 (488)
T KOG2325|consen 427 GVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLKRLV 479 (488)
T ss_pred EEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56677888888899999998899999999999999999999888888887654
No 337
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=21.20 E-value=80 Score=32.85 Aligned_cols=30 Identities=33% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCCCccceechhhHHHHHhhhCCccccccccc
Q 010537 274 SCKGELALAHKECAVKWFTIKGNKTCDVCKQD 305 (508)
Q Consensus 274 ~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~ 305 (508)
.|| ..|||.+|+--==--||+..||-|+..
T Consensus 241 nCk--rEWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCK--REWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCc--hhheeccccccCCCCCCcEeCHHhHhc
Confidence 355 378999997643345678899999864
No 338
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=21.19 E-value=51 Score=26.25 Aligned_cols=25 Identities=12% Similarity=0.426 Sum_probs=19.5
Q ss_pred ceechhhHHHHHhhhCCcccccccccc
Q 010537 280 ALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 280 h~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
|+.--.|+..-+.. +..||||++.+
T Consensus 21 HYLCl~CLt~ml~~--s~~C~iC~~~L 45 (50)
T PF03854_consen 21 HYLCLNCLTLMLSR--SDRCPICGKPL 45 (50)
T ss_dssp -EEEHHHHHHT-SS--SSEETTTTEE-
T ss_pred hhHHHHHHHHHhcc--ccCCCcccCcC
Confidence 88888999988877 78999999977
No 339
>PRK09776 putative diguanylate cyclase; Provisional
Probab=21.17 E-value=3.4e+02 Score=31.94 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=9.7
Q ss_pred hhhhhhhHHHHHHHHH
Q 010537 372 LAISLPFSCVLGLLSS 387 (508)
Q Consensus 372 laislPFs~vlgll~S 387 (508)
-++..|-++.+++|..
T Consensus 25 ~~iW~~~g~~~~~ll~ 40 (1092)
T PRK09776 25 APLWFPTAIMMVAFYR 40 (1092)
T ss_pred ccccccHHHHHHHHHh
Confidence 3466777766665543
No 340
>PLN02248 cellulose synthase-like protein
Probab=21.08 E-value=3.5e+02 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=29.3
Q ss_pred eEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 268 MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 268 ~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
.-.+||.|. ..+-++|...=++. ...||-||..|+.
T Consensus 143 ~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 178 (1135)
T PLN02248 143 EDLLPCECG---FKICRDCYIDAVKS--GGICPGCKEPYKV 178 (1135)
T ss_pred ccCCccccc---chhHHhHhhhhhhc--CCCCCCCcccccc
Confidence 347899998 77888888887777 5589999999964
No 341
>PF06432 GPI2: Phosphatidylinositol N-acetylglucosaminyltransferase; InterPro: IPR009450 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This step involves products of three or four genes in both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively.; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=20.94 E-value=8.6e+02 Score=25.05 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=5.8
Q ss_pred HHHHHhhhcccc
Q 010537 358 FLEQLLVSDLGA 369 (508)
Q Consensus 358 FLeqLLv~~lg~ 369 (508)
|+..++..|.+.
T Consensus 147 ~l~~l~~~DY~~ 158 (282)
T PF06432_consen 147 FLLHLLFHDYSY 158 (282)
T ss_pred HHHHHHHHhccc
Confidence 444445555543
No 342
>PRK11689 aromatic amino acid exporter; Provisional
Probab=20.91 E-value=8.6e+02 Score=24.44 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=8.1
Q ss_pred cchhHHHHHHHH
Q 010537 422 NVNPILAVLLSS 433 (508)
Q Consensus 422 ~~~~v~~illa~ 433 (508)
-++||.+++++.
T Consensus 249 ~l~Pv~a~i~~~ 260 (295)
T PRK11689 249 YFTPVLSAALAA 260 (295)
T ss_pred HhHHHHHHHHHH
Confidence 356777877773
No 343
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=20.74 E-value=4.2e+02 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.3
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q 010537 370 RALAISLPFSCVLGLLSSM 388 (508)
Q Consensus 370 ~AlaislPFs~vlgll~S~ 388 (508)
.|+.++..++..||+++++
T Consensus 104 ~a~ils~~igi~LG~~aa~ 122 (317)
T COG0601 104 VALILAVLLGIPLGILAAL 122 (317)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888886
No 344
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=20.70 E-value=2.5e+02 Score=30.64 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=9.4
Q ss_pred Ccccccccccc
Q 010537 296 NKTCDVCKQDV 306 (508)
Q Consensus 296 ~~tCpICr~~~ 306 (508)
...||-|++..
T Consensus 230 ~a~CpRC~~~L 240 (403)
T TIGR00155 230 EPVCPRCSTPL 240 (403)
T ss_pred CcCCcCCCCcc
Confidence 56799999987
No 345
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=20.64 E-value=4.7e+02 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHhhhh
Q 010537 376 LPFSCVLGLLSSMIASTMV 394 (508)
Q Consensus 376 lPFs~vlgll~S~~as~mv 394 (508)
+.+++++|++.......+.
T Consensus 128 ~~~a~i~g~~~~~~~~~~~ 146 (193)
T PF06738_consen 128 MIVAFILGLLVGLLRQLLS 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444333
No 346
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=20.53 E-value=4.4e+02 Score=26.57 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010537 358 FLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAH 415 (508)
Q Consensus 358 FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h 415 (508)
.||-..-..+|-.=.+|-.=|--|+-+...++++.--++||+-+|+...+.-+.-.+.
T Consensus 21 ~leRqVFDFLGyqWaPIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvf 78 (200)
T PF05640_consen 21 ALERQVFDFLGYQWAPILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVF 78 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHH
Confidence 3444444455554445555555556666666677777888988888777766654443
No 347
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=20.47 E-value=3.1e+02 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010537 374 ISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAH 415 (508)
Q Consensus 374 islPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h 415 (508)
.++||.+++++...+. |+.+.+||..+.+..+
T Consensus 11 ~mi~~~ivl~~~~~~~----------~~~~~~q~~~~L~tg~ 42 (80)
T PF14333_consen 11 LMIPFAIVLSLASIVL----------GVLVLIQWFAILFTGR 42 (80)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHcCC
Confidence 4466666666655544 5555556655555444
No 348
>KOG4358 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=3.9e+02 Score=30.39 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=35.2
Q ss_pred HHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010537 358 FLEQLLVSDLGARALAISLPFSCVLGLLSSMIASTMVSRSYIWAYASFQFAVVILFAH 415 (508)
Q Consensus 358 FLeqLLv~~lg~~AlaislPFs~vlgll~S~~as~mv~r~y~W~ya~~qF~lvvlf~h 415 (508)
|+--+++..+-..-+.+-.|..++=|.++-+- -+|.|.|++.-.+.++++..
T Consensus 28 ~~p~~ttvf~~f~~~~l~hp~qwv~~~~~~i~------s~y~~f~~~~l~~s~I~~~V 79 (584)
T KOG4358|consen 28 FLPICTTVFIIFSRIDLFHPIQWLSDSFSDLY------SSYVIFYFLLLSVVIIIISI 79 (584)
T ss_pred hhhhhheeeeeeecccccchHHHHhhHHHHHH------HHHHHHHHHHHHHHHHHhhh
Confidence 44445566666666677778877777655443 48999998877776666654
No 349
>PRK11281 hypothetical protein; Provisional
Probab=20.35 E-value=3.2e+02 Score=33.88 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 010537 403 ASFQFAVVIL 412 (508)
Q Consensus 403 a~~qF~lvvl 412 (508)
.++-.+++++
T Consensus 693 ~~~P~~l~~l 702 (1113)
T PRK11281 693 TIAPIALIVL 702 (1113)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 350
>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]
Probab=20.20 E-value=4.9e+02 Score=30.23 Aligned_cols=43 Identities=23% Similarity=0.423 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Q 010537 373 AISLPFSCVLGLLSSMIAS-TMVSRSYIWAYASFQFAVVILFAH 415 (508)
Q Consensus 373 aislPFs~vlgll~S~~as-~mv~r~y~W~ya~~qF~lvvlf~h 415 (508)
.+++.++.+++.++=...- .---+.|.|+|..+.|...++...
T Consensus 417 ~~~l~is~~la~l~~~~t~~~~ppk~~~~v~~~~gF~mSi~wI~ 460 (605)
T KOG2399|consen 417 LISLIISIPLAILAFFFTRLDKPPKFYHWVFSALGFLMSIAWIY 460 (605)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCCchHhHHHHHHHHHHHHHHHH
Confidence 3445555555554444322 222368999999888888776655
No 351
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=20.18 E-value=4.7e+02 Score=29.15 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 010537 396 RSYIWAYASFQFAVVILFA 414 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~ 414 (508)
|.|.|+.|.+--++|.+-.
T Consensus 99 ~~y~~~lag~T~~iv~~~~ 117 (650)
T PF04632_consen 99 RSYAFMLAGYTAAIVALPA 117 (650)
T ss_pred chHHHHHHHHHHHHHHhhc
Confidence 6777777776666655443
No 352
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=20.05 E-value=3e+02 Score=32.30 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010537 397 SYIWAYASFQFAVVILF 413 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf 413 (508)
.|+|+...+-.+|++++
T Consensus 37 ~~~~~~v~vnl~l~l~L 53 (712)
T COG5000 37 DYILALVAVNLALLLIL 53 (712)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 36666544444444333
No 353
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.04 E-value=6.6e+02 Score=28.17 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHh--hh----HHHHHHHHHHh
Q 010537 394 VSRSYIWAYASFQFAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAIS--TN----SLIVEYLRWRM 455 (508)
Q Consensus 394 v~r~y~W~ya~~qF~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~--~n----~~~~e~~~wr~ 455 (508)
..|+.+|.++. ++.++...++|-+-.-+-++.+++..+.|+|.++. +. +-+++|-.|+.
T Consensus 299 ~gkk~~~~~~~---~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T 363 (467)
T COG2211 299 FGKKKLFLIGL---LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT 363 (467)
T ss_pred hchHHHHHHHH---HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence 34777788774 33444444455555445555555556656655443 22 34689999986
No 354
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=20.01 E-value=7.3e+02 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=13.5
Q ss_pred chhhhHHHHHHHHHHHHHhhhc
Q 010537 345 PVLIMVSMLAYFCFLEQLLVSD 366 (508)
Q Consensus 345 p~LViismLayFcFLeqLLv~~ 366 (508)
.+-+++.++.+++|++.+-..+
T Consensus 151 ~~~~~f~~l~~~~~~~a~~~~~ 172 (483)
T PF02516_consen 151 MLELFFPLLIIYFFLLALKSAK 172 (483)
T ss_dssp GGTTHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 3445667777777777776666
Done!