Query 010537
Match_columns 508
No_of_seqs 277 out of 1185
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8s_A Cellular modulator of i 99.6 3.1E-16 1.1E-20 129.6 5.9 57 250-307 13-69 (80)
2 1vyx_A ORF K3, K3RING; zinc-bi 99.6 6.3E-16 2.2E-20 121.5 3.9 55 250-307 4-58 (60)
3 1x4j_A Ring finger protein 38; 99.1 1.2E-10 4.2E-15 92.5 5.9 51 250-307 21-71 (75)
4 2kiz_A E3 ubiquitin-protein li 99.1 1.3E-10 4.6E-15 90.6 5.9 52 250-308 12-63 (69)
5 2ep4_A Ring finger protein 24; 99.0 2.6E-10 8.8E-15 90.1 6.6 53 250-309 13-65 (74)
6 2l0b_A E3 ubiquitin-protein li 99.0 2.4E-10 8.2E-15 94.8 4.8 51 250-307 38-88 (91)
7 1iym_A EL5; ring-H2 finger, ub 99.0 1.5E-10 5.2E-15 86.4 3.1 49 251-306 4-53 (55)
8 2ect_A Ring finger protein 126 99.0 3E-10 1E-14 90.6 4.6 52 250-308 13-64 (78)
9 2ecl_A Ring-box protein 2; RNF 98.9 8.6E-10 3E-14 89.9 4.1 49 252-307 15-75 (81)
10 1v87_A Deltex protein 2; ring- 98.8 1.9E-09 6.6E-14 91.7 4.8 51 252-307 25-93 (114)
11 2ecm_A Ring finger and CHY zin 98.8 3E-09 1E-13 79.1 4.5 50 251-307 4-54 (55)
12 2ea6_A Ring finger protein 4; 98.8 6E-09 2.1E-13 80.3 4.7 51 250-307 13-67 (69)
13 3dpl_R Ring-box protein 1; ubi 98.7 5.7E-09 2E-13 90.2 4.8 49 252-307 37-100 (106)
14 3ng2_A RNF4, snurf, ring finge 98.7 6.4E-09 2.2E-13 80.9 3.2 51 250-307 8-62 (71)
15 2ct2_A Tripartite motif protei 98.7 2.7E-08 9.4E-13 80.2 6.2 53 250-307 13-67 (88)
16 1chc_A Equine herpes virus-1 r 98.6 2.5E-08 8.7E-13 77.2 4.5 50 250-308 3-52 (68)
17 2d8t_A Dactylidin, ring finger 98.6 2.8E-08 9.7E-13 78.2 4.3 48 250-307 13-60 (71)
18 2xeu_A Ring finger protein 4; 98.6 2E-08 6.8E-13 76.3 3.1 50 251-307 2-55 (64)
19 2ecn_A Ring finger protein 141 98.6 2E-08 6.9E-13 78.4 2.8 48 250-308 13-60 (70)
20 2yur_A Retinoblastoma-binding 98.6 5.3E-08 1.8E-12 77.5 5.0 50 250-307 13-63 (74)
21 2csy_A Zinc finger protein 183 98.5 8.3E-08 2.8E-12 77.2 5.8 48 250-307 13-60 (81)
22 4a0k_B E3 ubiquitin-protein li 98.5 1.1E-08 3.7E-13 90.4 0.5 49 252-307 48-111 (117)
23 2ysl_A Tripartite motif-contai 98.5 1.1E-07 3.9E-12 74.3 5.3 50 250-307 18-68 (73)
24 2djb_A Polycomb group ring fin 98.5 1.1E-07 3.8E-12 74.9 5.2 49 250-308 13-62 (72)
25 2ct0_A Non-SMC element 1 homol 98.5 6.5E-08 2.2E-12 79.2 3.3 51 250-307 13-63 (74)
26 2ecy_A TNF receptor-associated 98.4 1.5E-07 5.3E-12 72.8 3.7 49 250-307 13-61 (66)
27 3ztg_A E3 ubiquitin-protein li 98.4 3E-07 1E-11 75.3 5.1 50 250-307 11-61 (92)
28 2ysj_A Tripartite motif-contai 98.4 4.8E-07 1.6E-11 69.3 5.8 45 250-302 18-63 (63)
29 2ecw_A Tripartite motif-contai 98.4 4.8E-07 1.6E-11 71.9 5.8 50 250-307 17-70 (85)
30 1t1h_A Gspef-atpub14, armadill 98.3 4.3E-07 1.5E-11 72.2 5.2 49 250-307 6-54 (78)
31 4ayc_A E3 ubiquitin-protein li 98.3 1.2E-07 4.1E-12 84.0 1.9 47 252-308 53-99 (138)
32 2ecj_A Tripartite motif-contai 98.3 3.3E-07 1.1E-11 68.5 3.6 45 250-302 13-58 (58)
33 2ecv_A Tripartite motif-contai 98.3 5.5E-07 1.9E-11 71.6 5.1 50 250-307 17-70 (85)
34 4ap4_A E3 ubiquitin ligase RNF 98.3 3.5E-07 1.2E-11 78.1 3.4 53 251-310 6-62 (133)
35 4ap4_A E3 ubiquitin ligase RNF 98.2 9.1E-07 3.1E-11 75.6 4.2 51 250-307 70-124 (133)
36 3lrq_A E3 ubiquitin-protein li 98.2 5.6E-07 1.9E-11 75.7 2.5 48 251-307 21-69 (100)
37 2y43_A E3 ubiquitin-protein li 98.2 6E-07 2.1E-11 74.7 2.5 47 251-307 21-68 (99)
38 2egp_A Tripartite motif-contai 98.2 3E-07 1E-11 72.8 0.4 50 250-307 10-64 (79)
39 1g25_A CDK-activating kinase a 98.1 1.1E-06 3.8E-11 67.7 3.3 51 251-307 2-54 (65)
40 2ckl_A Polycomb group ring fin 98.1 1.4E-06 4.7E-11 73.7 3.5 48 251-308 14-62 (108)
41 3fl2_A E3 ubiquitin-protein li 98.1 1.1E-06 3.8E-11 76.0 2.7 49 251-308 51-99 (124)
42 2ckl_B Ubiquitin ligase protei 98.1 2.1E-06 7.2E-11 77.7 4.2 48 251-307 53-101 (165)
43 3k1l_B Fancl; UBC, ring, RWD, 98.0 2.2E-06 7.4E-11 88.5 3.3 55 250-307 306-372 (381)
44 1jm7_A BRCA1, breast cancer ty 97.9 3.6E-06 1.2E-10 70.7 2.6 48 252-307 21-69 (112)
45 3hct_A TNF receptor-associated 97.9 8.4E-06 2.9E-10 70.2 4.2 49 250-307 16-64 (118)
46 1e4u_A Transcriptional repress 97.9 1.1E-05 3.6E-10 66.0 4.5 56 250-310 9-64 (78)
47 1z6u_A NP95-like ring finger p 97.8 6.5E-06 2.2E-10 74.5 3.2 48 251-307 77-124 (150)
48 3l11_A E3 ubiquitin-protein li 97.8 2.2E-06 7.4E-11 73.2 -0.2 49 250-307 13-61 (115)
49 1rmd_A RAG1; V(D)J recombinati 97.8 1E-05 3.4E-10 69.1 3.4 48 251-307 22-69 (116)
50 2y1n_A E3 ubiquitin-protein li 97.7 2.4E-05 8.3E-10 81.5 4.7 48 252-308 332-379 (389)
51 2kr4_A Ubiquitin conjugation f 97.7 5.6E-05 1.9E-09 62.2 5.7 48 250-307 12-59 (85)
52 1bor_A Transcription factor PM 97.6 7.8E-06 2.7E-10 62.0 0.0 45 250-307 4-48 (56)
53 2kre_A Ubiquitin conjugation f 97.6 9.3E-05 3.2E-09 62.9 6.2 48 250-307 27-74 (100)
54 2vje_B MDM4 protein; proto-onc 97.5 4.5E-05 1.6E-09 59.4 3.2 49 250-308 5-56 (63)
55 3knv_A TNF receptor-associated 97.5 4.6E-05 1.6E-09 68.4 2.8 48 250-306 29-76 (141)
56 2vje_A E3 ubiquitin-protein li 97.4 6.5E-05 2.2E-09 58.7 3.0 48 251-308 7-57 (64)
57 4ic3_A E3 ubiquitin-protein li 97.4 2.5E-05 8.5E-10 62.4 0.3 44 251-308 23-67 (74)
58 1jm7_B BARD1, BRCA1-associated 97.4 2.3E-05 7.7E-10 67.4 -0.0 45 251-307 21-66 (117)
59 2c2l_A CHIP, carboxy terminus 97.4 0.00017 5.8E-09 68.6 5.5 48 251-307 207-254 (281)
60 1wgm_A Ubiquitin conjugation f 97.2 0.00049 1.7E-08 58.3 6.1 49 250-307 20-68 (98)
61 3hcs_A TNF receptor-associated 97.1 0.00033 1.1E-08 63.5 4.5 50 250-308 16-65 (170)
62 2yu4_A E3 SUMO-protein ligase 97.1 0.00045 1.5E-08 57.5 5.0 48 250-305 5-59 (94)
63 2ea5_A Cell growth regulator w 97.0 0.00046 1.6E-08 54.7 3.8 46 250-309 13-59 (68)
64 2f42_A STIP1 homology and U-bo 97.0 0.00058 2E-08 64.3 4.6 49 250-307 104-152 (179)
65 3nw0_A Non-structural maintena 96.9 0.00057 2E-08 66.6 4.5 49 252-308 180-229 (238)
66 2ecg_A Baculoviral IAP repeat- 96.9 8.7E-05 3E-09 59.1 -1.1 44 251-308 24-68 (75)
67 1wim_A KIAA0161 protein; ring 96.9 0.00064 2.2E-08 56.1 3.6 50 251-306 4-62 (94)
68 3t6p_A Baculoviral IAP repeat- 96.3 0.00096 3.3E-08 68.3 1.1 44 251-308 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 96.2 0.003 1E-07 63.0 4.2 50 250-307 179-231 (267)
70 2bay_A PRE-mRNA splicing facto 96.0 0.0044 1.5E-07 48.3 3.5 46 253-308 4-50 (61)
71 2yho_A E3 ubiquitin-protein li 95.7 0.0021 7E-08 52.2 0.4 45 251-309 17-62 (79)
72 2lri_C Autoimmune regulator; Z 92.7 0.054 1.8E-06 43.1 2.4 54 248-310 8-64 (66)
73 3vk6_A E3 ubiquitin-protein li 92.0 0.1 3.5E-06 45.3 3.4 49 255-311 4-52 (101)
74 1weu_A Inhibitor of growth fam 82.3 0.64 2.2E-05 39.3 2.4 50 248-306 32-86 (91)
75 2l43_A N-teminal domain from h 81.7 0.54 1.9E-05 39.1 1.7 55 249-306 22-76 (88)
76 2k16_A Transcription initiatio 78.1 0.39 1.3E-05 38.2 -0.3 51 250-306 16-69 (75)
77 2ku3_A Bromodomain-containing 77.0 0.77 2.6E-05 36.9 1.1 52 250-305 14-66 (71)
78 1wev_A Riken cDNA 1110020M19; 75.7 0.3 1E-05 40.6 -1.6 54 251-307 15-74 (88)
79 2yt5_A Metal-response element- 71.8 0.73 2.5E-05 35.7 -0.2 53 249-306 3-62 (66)
80 2l5u_A Chromodomain-helicase-D 71.6 1.4 4.6E-05 34.2 1.3 47 250-305 9-58 (61)
81 2ri7_A Nucleosome-remodeling f 70.2 1.2 4.2E-05 40.3 0.9 51 250-306 6-60 (174)
82 3o36_A Transcription intermedi 70.2 0.81 2.8E-05 42.1 -0.3 48 251-306 3-52 (184)
83 3u5n_A E3 ubiquitin-protein li 68.1 0.72 2.4E-05 43.4 -1.2 48 251-306 6-55 (207)
84 2ysm_A Myeloid/lymphoid or mix 67.6 1.3 4.5E-05 37.5 0.5 38 250-292 5-42 (111)
85 2rsd_A E3 SUMO-protein ligase 67.4 1.1 3.6E-05 35.4 -0.2 49 249-304 7-64 (68)
86 2yql_A PHD finger protein 21A; 66.9 0.86 2.9E-05 34.5 -0.8 47 250-304 7-55 (56)
87 1wen_A Inhibitor of growth fam 66.8 1.8 6.2E-05 34.7 1.1 50 248-306 12-66 (71)
88 2e6r_A Jumonji/ARID domain-con 66.6 0.76 2.6E-05 38.5 -1.2 51 250-306 14-67 (92)
89 2lv9_A Histone-lysine N-methyl 66.5 1.9 6.5E-05 36.3 1.3 47 251-304 27-75 (98)
90 1wep_A PHF8; structural genomi 65.2 5 0.00017 32.3 3.4 51 250-306 10-64 (79)
91 2lbm_A Transcriptional regulat 64.8 4.2 0.00014 37.0 3.2 45 251-304 62-116 (142)
92 1mm2_A MI2-beta; PHD, zinc fin 64.6 0.95 3.3E-05 35.0 -0.9 48 250-305 7-56 (61)
93 1we9_A PHD finger family prote 62.8 4.4 0.00015 31.1 2.6 51 250-305 4-58 (64)
94 1xwh_A Autoimmune regulator; P 62.7 1.3 4.5E-05 34.7 -0.5 48 249-305 5-55 (66)
95 1f62_A Transcription factor WS 60.8 2.3 8E-05 31.2 0.7 46 253-304 1-49 (51)
96 3ql9_A Transcriptional regulat 59.3 7.5 0.00026 34.8 3.8 47 250-304 55-110 (129)
97 4gne_A Histone-lysine N-methyl 59.0 3.6 0.00012 35.6 1.6 47 249-303 12-60 (107)
98 1wem_A Death associated transc 58.5 9.2 0.00031 30.3 3.8 49 251-306 15-71 (76)
99 2vpb_A Hpygo1, pygopus homolog 55.2 7.1 0.00024 30.7 2.6 33 250-287 6-40 (65)
100 3j1z_P YIIP, cation efflux fam 54.0 36 0.0012 33.4 8.2 24 397-420 81-104 (306)
101 1weo_A Cellulose synthase, cat 52.0 13 0.00043 31.8 3.8 53 251-309 15-71 (93)
102 2kwj_A Zinc finger protein DPF 50.2 6.2 0.00021 33.9 1.7 35 253-290 2-41 (114)
103 1wew_A DNA-binding family prot 49.0 16 0.00056 29.2 3.9 51 249-306 13-73 (78)
104 2xb1_A Pygopus homolog 2, B-ce 49.0 8 0.00027 33.0 2.2 50 253-306 4-62 (105)
105 4b8c_D Glucose-repressible alc 48.9 5.4 0.00019 43.6 1.4 15 443-457 28-51 (727)
106 2vnf_A ING 4, P29ING4, inhibit 48.6 3.1 0.00011 32.1 -0.4 46 250-304 8-58 (60)
107 2jmi_A Protein YNG1, ING1 homo 45.7 2.9 0.0001 35.2 -1.1 52 249-304 23-75 (90)
108 1fp0_A KAP-1 corepressor; PHD 45.5 6.5 0.00022 33.1 1.0 48 250-305 23-72 (88)
109 2puy_A PHD finger protein 21A; 44.3 3.4 0.00012 31.5 -0.8 47 251-306 4-53 (60)
110 2zy9_A Mg2+ transporter MGTE; 43.4 25 0.00085 36.7 5.3 17 426-442 418-434 (473)
111 3v43_A Histone acetyltransfera 40.8 11 0.00038 32.1 1.8 33 252-289 5-43 (112)
112 3kv5_D JMJC domain-containing 39.4 7 0.00024 41.7 0.4 50 251-306 36-89 (488)
113 2ro1_A Transcription intermedi 39.4 4 0.00014 38.0 -1.3 47 252-306 2-50 (189)
114 1pw4_A Glycerol-3-phosphate tr 38.3 2.7E+02 0.0092 26.5 11.8 19 424-442 345-363 (451)
115 2ko5_A Ring finger protein Z; 38.0 13 0.00043 32.1 1.7 44 253-307 29-72 (99)
116 1x4i_A Inhibitor of growth pro 37.4 6.9 0.00023 31.2 -0.1 53 250-306 4-56 (70)
117 1wee_A PHD finger family prote 36.2 22 0.00076 27.9 2.7 50 250-305 14-66 (72)
118 4hg6_A Cellulose synthase subu 35.8 1.9E+02 0.0064 32.1 11.1 25 397-421 62-86 (802)
119 3ask_A E3 ubiquitin-protein li 33.1 9.1 0.00031 37.3 0.0 48 253-305 175-225 (226)
120 3udc_A Small-conductance mecha 33.0 2.6E+02 0.0089 27.0 10.4 47 407-453 74-120 (285)
121 1wil_A KIAA1045 protein; ring 32.9 26 0.00088 29.7 2.7 33 251-290 14-47 (89)
122 2e6s_A E3 ubiquitin-protein li 32.0 7.9 0.00027 31.4 -0.5 45 254-304 28-76 (77)
123 3c6w_A P28ING5, inhibitor of g 31.9 5.2 0.00018 30.8 -1.6 46 250-304 7-57 (59)
124 3v43_A Histone acetyltransfera 31.3 9.9 0.00034 32.4 -0.0 46 254-304 63-111 (112)
125 3ixz_A Potassium-transporting 31.2 1.9E+02 0.0064 33.2 10.4 58 396-456 962-1021(1034)
126 2g6q_A Inhibitor of growth pro 30.9 5.7 0.0002 30.9 -1.5 47 249-304 8-59 (62)
127 2kgg_A Histone demethylase jar 30.6 16 0.00055 27.1 1.0 44 255-303 5-52 (52)
128 2vv5_A MSCS, small-conductance 30.1 2.5E+02 0.0086 27.1 9.8 38 416-453 84-121 (286)
129 3asl_A E3 ubiquitin-protein li 25.3 8.6 0.0003 30.5 -1.4 26 280-305 41-69 (70)
130 2kwj_A Zinc finger protein DPF 23.5 7.4 0.00025 33.3 -2.3 47 254-306 60-109 (114)
131 2ysm_A Myeloid/lymphoid or mix 22.2 11 0.00038 31.7 -1.4 27 280-306 77-105 (111)
132 3o70_A PHD finger protein 13; 21.4 42 0.0014 26.4 1.9 48 250-304 17-66 (68)
133 3kqi_A GRC5, PHD finger protei 20.5 64 0.0022 25.4 2.8 50 251-306 9-62 (75)
134 2v50_A Multidrug resistance pr 20.5 2.9E+02 0.0099 31.5 9.3 39 343-381 871-909 (1052)
No 1
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.1e-16 Score=129.62 Aligned_cols=57 Identities=26% Similarity=0.767 Sum_probs=50.5
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|+||++++++++ .+++||+|+|++|+||.+||++||..+++.+||+||+.|.
T Consensus 13 ~~~~~C~IC~~~~~~~~-~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES-PLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSS-CEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCC-eeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45678999999987554 5679999999999999999999999987789999999995
No 2
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.58 E-value=6.3e-16 Score=121.50 Aligned_cols=55 Identities=38% Similarity=0.817 Sum_probs=48.3
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..||||+++.+ +.+++||.|+|++++||+.||++|+..+++.+||+|++.|.
T Consensus 4 ~~~~~CrIC~~~~~---~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS---CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC---CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999998732 24579999999999999999999999999999999999984
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=92.54 Aligned_cols=51 Identities=27% Similarity=0.749 Sum_probs=45.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++++.+++....++|+ |.||..||.+|++. +.+||+||..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKA--NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHc--CCcCcCcCCcCC
Confidence 4567899999999887777899998 99999999999987 679999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=90.60 Aligned_cols=52 Identities=38% Similarity=0.885 Sum_probs=45.4
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+++..|.||++.+..++....++|+ |.||..||.+|++. +.+||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 4567899999999877778899998 99999999999988 5689999998863
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=90.13 Aligned_cols=53 Identities=25% Similarity=0.708 Sum_probs=45.9
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
+++..|.||++++.+......++|. |.||..||.+|++. +.+||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEV--RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHH--CSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHc--CCcCCCcCcccccc
Confidence 3456899999999877777888998 99999999999988 56999999998654
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.00 E-value=2.4e-10 Score=94.82 Aligned_cols=51 Identities=31% Similarity=0.649 Sum_probs=45.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++++.+++....++|+ |.||..||++|++. +.+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 4567899999999888888899999 99999999999987 679999999874
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.99 E-value=1.5e-10 Score=86.37 Aligned_cols=49 Identities=33% Similarity=0.752 Sum_probs=43.4
Q ss_pred CCCcceeccccccCCCceEEec-CCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
++..|.||++++.+++....++ |+ |.||.+|+.+|++. +.+||+||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 4567999999998877888888 88 99999999999987 67899999876
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.98 E-value=3e-10 Score=90.59 Aligned_cols=52 Identities=25% Similarity=0.707 Sum_probs=45.2
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+++..|.||++.+.+......++|. |.||..||.+|++. +.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQ--HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTT--TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHc--CCcCcCcCCccCC
Confidence 4567899999999877777889999 99999999999986 5799999998863
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=8.6e-10 Score=89.91 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=38.3
Q ss_pred CCcceeccccccC-----------CCceEEec-CCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGE-----------GGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee-----------~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++.|.||++++.+ ++..+.++ |+ |.||.+||++||+. +.+||+||..+.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 3457777776643 44466666 88 99999999999988 579999999874
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=1.9e-09 Score=91.70 Aligned_cols=51 Identities=25% Similarity=0.436 Sum_probs=40.9
Q ss_pred CCcceeccccccCCC---------------ceEEecCCCCCccceechhhHHHHHhh---hCCccccccccccc
Q 010537 252 EAVCRICLVELGEGG---------------DMFKLECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e---------------~~l~LPC~CKGsLh~fH~~Cl~kWL~~---kg~~tCpICr~~~~ 307 (508)
+..|.||++++.+.. ....++|+ |.||.+||.+|+.. +.+.+||+||..|.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 457999999986532 22367899 99999999999964 34679999999885
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.81 E-value=3e-09 Score=79.10 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=41.9
Q ss_pred CCCcceeccccccCCC-ceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGG-DMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e-~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++++.+++ ....++|. |.||.+|+.+|++. +.+||+|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 4567999999986543 46788999 99999999999998 489999998763
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6e-09 Score=80.31 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=42.0
Q ss_pred CCCCcceeccccccCC----CceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEG----GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~----e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+. .....++|+ |.||..||++|++. +..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3566799999988642 234778999 99999999999988 779999999874
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.75 E-value=5.7e-09 Score=90.25 Aligned_cols=49 Identities=16% Similarity=0.394 Sum_probs=40.3
Q ss_pred CCcceeccccccCC---------------CceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEG---------------GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~---------------e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++.|.||++++++. .....++|+ |.||..||++||+. +.+||+||..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 45699999887643 124568899 99999999999987 789999999874
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.70 E-value=6.4e-09 Score=80.91 Aligned_cols=51 Identities=22% Similarity=0.549 Sum_probs=42.5
Q ss_pred CCCCcceeccccccC----CCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGE----GGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee----~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ +.....++|+ |.||..|+++|++. +.+||+||..+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHc--CCCCCCCCCccC
Confidence 456789999988754 2344788999 99999999999987 579999999885
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.7e-08 Score=80.20 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=44.2
Q ss_pred CCCCcceeccccccCCCc-eEEecCCCCCccceechhhHHHHHhhh-CCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGD-MFKLECSCKGELALAHKECAVKWFTIK-GNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~-~l~LPC~CKGsLh~fH~~Cl~kWL~~k-g~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+.+. ...++|+ |.||..|+.+|++.+ +...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 456779999999876554 7788999 999999999999874 3479999999875
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.62 E-value=2.5e-08 Score=77.23 Aligned_cols=50 Identities=28% Similarity=0.597 Sum_probs=41.9
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+++..|.||++.+.+ ....++|+ |.||..|+.+|++. +.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCL-----HAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTT-----EEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCC-----CeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 355679999988753 35789999 99999999999987 6799999998863
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.8e-08 Score=78.18 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=40.9
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+. +...++|+ |.||..||.+|+.. +..||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCV---HPVSLPCK-----HVFCYLCVKGASWL--GKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCS---SEEEETTT-----EEEEHHHHHHCTTC--SSBCSSSCCBCC
T ss_pred CCCCCCccCCcccC---CCEEccCC-----CHHHHHHHHHHHHC--CCcCcCcCchhC
Confidence 34567999998875 36778999 99999999999987 689999999885
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.59 E-value=2e-08 Score=76.30 Aligned_cols=50 Identities=20% Similarity=0.478 Sum_probs=41.7
Q ss_pred CCCcceeccccccCC----CceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEG----GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~----e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+.+. .....++|+ |.||.+|+.+|++. +.+||+|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCC
Confidence 356799999988642 334788999 99999999999988 779999999885
No 19
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2e-08 Score=78.37 Aligned_cols=48 Identities=23% Similarity=0.661 Sum_probs=41.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+++..|.||++.+.+ ..++|+ |.||..|+.+|+.. +..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCA-----HSFCQKCIDKWSDR--HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTT-----EEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC----cccCCC-----CcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence 345679999988764 789999 99999999999985 7899999998863
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.56 E-value=5.3e-08 Score=77.49 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=42.3
Q ss_pred CCCCcceeccccccCCCceEEec-CCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+. +...++ |+ |.||..||.+|++.++...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT---DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT---TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh---CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 45678999998876 366789 99 9999999999999866689999999753
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.3e-08 Score=77.19 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=41.2
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ ...++|+ |.||..|+.+|++. ...||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 456789999988753 6678999 99999999999987 779999999985
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.54 E-value=1.1e-08 Score=90.41 Aligned_cols=49 Identities=16% Similarity=0.420 Sum_probs=0.4
Q ss_pred CCcceeccccccCC-------------Cc--eEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 252 EAVCRICLVELGEG-------------GD--MFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~-------------e~--~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++.|.||++++++. ++ ...++|+ |.||.+||++||+. +.+||+||..+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 35799999998641 22 2235788 99999999999998 789999999874
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=74.34 Aligned_cols=50 Identities=28% Similarity=0.545 Sum_probs=41.4
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhh-hCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI-KGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~-kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+. +...++|+ |.||..|+.+|++. .++..||+|+..+.
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 45678999998876 36778999 99999999999974 34669999999885
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.1e-07 Score=74.93 Aligned_cols=49 Identities=27% Similarity=0.498 Sum_probs=40.9
Q ss_pred CCCCcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+++..|.||++.+.+ ...+ +|. |.||..||.+|++. +..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC---cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 456789999988763 4554 899 99999999999987 6899999998863
No 25
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=6.5e-08 Score=79.21 Aligned_cols=51 Identities=24% Similarity=0.504 Sum_probs=39.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+....|.||.+.+..+. .-..|. |.||.+||.+||+.+++.+||+|+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~--~C~~C~-----h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--SCETCG-----IRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--ECSSSC-----CEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCC--ccCCCC-----chhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34467999998886431 112444 9999999999999877799999999875
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.5e-07 Score=72.81 Aligned_cols=49 Identities=18% Similarity=0.494 Sum_probs=40.4
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ ...++|+ |.||..|+.+|++ +++..||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEESS---CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhcC---eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 456789999988763 4457999 9999999999996 34779999999874
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.37 E-value=3e-07 Score=75.30 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=43.0
Q ss_pred CCCCcceeccccccCCCceEEec-CCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+. ++..++ |+ |.|+..||.+|+..+++..||+|+..+.
T Consensus 11 ~~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT---DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS---SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc---CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 46688999998775 367889 88 9999999999998877789999999873
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=4.8e-07 Score=69.28 Aligned_cols=45 Identities=27% Similarity=0.564 Sum_probs=37.2
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh-CCcccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-GNKTCDVC 302 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k-g~~tCpIC 302 (508)
+++..|.||++.+. ++..++|+ |.||..||.+|++.. ++..||+|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 45678999998876 36678999 999999999999853 36689998
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.36 E-value=4.8e-07 Score=71.94 Aligned_cols=50 Identities=28% Similarity=0.594 Sum_probs=41.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh----CCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK----GNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k----g~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ ...++|+ |.||..|+.+|+... +...||+|+..+.
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKE---PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSS---CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCc---ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 345679999988753 4578999 999999999999884 3779999999885
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.34 E-value=4.3e-07 Score=72.19 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=41.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.++..|.||++.+. ++..++|+ |.|++.||.+|+.. ++.+||+|+..+.
T Consensus 6 ~~~~~C~IC~~~~~---~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMK---DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCS---SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCS
T ss_pred cccCCCCCcccccc---CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCC
Confidence 45778999998775 36778999 99999999999974 5789999999885
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.33 E-value=1.2e-07 Score=84.00 Aligned_cols=47 Identities=23% Similarity=0.628 Sum_probs=40.4
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+..|.||++.+. ++..+||+ |.||..||.+|+.. +..||+||..+..
T Consensus 53 ~~~C~iC~~~~~---~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI---EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS---SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCcccC---CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 457999998875 36789999 99999999999987 7789999998853
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=3.3e-07 Score=68.52 Aligned_cols=45 Identities=33% Similarity=0.730 Sum_probs=36.9
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhh-hCCcccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI-KGNKTCDVC 302 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~-kg~~tCpIC 302 (508)
+++..|.||++.+.+ ...++|+ |.||..||.+|+.. +++..||+|
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKE---PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSS---CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCc---cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 356789999988764 4568999 99999999999764 457899998
No 33
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=5.5e-07 Score=71.56 Aligned_cols=50 Identities=32% Similarity=0.646 Sum_probs=41.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhh----hCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI----KGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~----kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ ...++|+ |.||..|+.+|+.. .+...||+|+..+.
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCC---ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345679999988753 5567998 99999999999987 35779999999885
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.27 E-value=3.5e-07 Score=78.12 Aligned_cols=53 Identities=19% Similarity=0.446 Sum_probs=43.7
Q ss_pred CCCcceeccccccCC----CceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccccc
Q 010537 251 EEAVCRICLVELGEG----GDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310 (508)
Q Consensus 251 ee~~CrICl~e~ee~----e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp 310 (508)
++..|.||++.+.+. .....++|+ |.||..||.+|++. +.+||+|+..+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTT--CSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHh--CCCCCCCCCcCcccc
Confidence 456799999988642 344789999 99999999999987 679999999997543
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.19 E-value=9.1e-07 Score=75.57 Aligned_cols=51 Identities=22% Similarity=0.549 Sum_probs=41.8
Q ss_pred CCCCcceeccccccC----CCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGE----GGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee----~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ +.....++|+ |.||..|+++|++. +.+||+|+..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHc--CCCCCCCCCcCC
Confidence 345679999988764 2334678898 99999999999988 679999999885
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.18 E-value=5.6e-07 Score=75.70 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=40.7
Q ss_pred CCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+. ++.. ++|+ |.||..||.+|+..+ ...||+||..+.
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCS-----KLCCFSCIRRWLTEQ-RAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTC-----CEEEHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred CCCCCccCCcccc---CccccCCCC-----ChhhHHHHHHHHHHC-cCCCCCCCCcCC
Confidence 4578999998875 3566 8999 999999999999984 279999999884
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.17 E-value=6e-07 Score=74.69 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=39.7
Q ss_pred CCCcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+.+ ...+ +|+ |.||..|+.+|+.. +..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCC
T ss_pred CCCCcccCChhhCC---cCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCC
Confidence 45689999988763 5555 899 99999999999986 679999999885
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.16 E-value=3e-07 Score=72.78 Aligned_cols=50 Identities=30% Similarity=0.583 Sum_probs=41.5
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh-----CCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-----GNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k-----g~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ ...++|+ |.||..|+.+|++.. +...||+|+..+.
T Consensus 10 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 10 QEEVTCPICLELLTE---PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCEETTTTEECSS---CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred ccCCCCcCCCcccCC---eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 456789999988763 5568999 999999999999863 3679999999885
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.14 E-value=1.1e-06 Score=67.73 Aligned_cols=51 Identities=16% Similarity=0.366 Sum_probs=40.0
Q ss_pred CCCcceeccc-cccCCCce-EEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLV-ELGEGGDM-FKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~-e~ee~e~~-l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++ .+.+.... ..++|+ |.||..|+.+|+.. ++..||+|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 3567999998 55543322 467999 99999999999875 4678999999885
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.11 E-value=1.4e-06 Score=73.73 Aligned_cols=48 Identities=23% Similarity=0.546 Sum_probs=40.5
Q ss_pred CCCcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
++..|.||++.+.+ ...+ +|+ |.||..||.+|+.. +..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECL-----HSFCKTCIVRYLET--SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHTS--CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC---cCEeCCCC-----ChhhHHHHHHHHHh--CCcCcCCCccccc
Confidence 45679999988753 5665 999 99999999999987 5899999998863
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.09 E-value=1.1e-06 Score=76.03 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=40.8
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
++..|.||++.+. ++..++|+ |.||..||..|+.. +...||+||..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 3567999998876 46778999 99999999999984 35699999998853
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.07 E-value=2.1e-06 Score=77.71 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=40.0
Q ss_pred CCCcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+.+ ...+ +|+ |.||..||.+|+.. ++..||+|+..+.
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC---cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 45689999988763 5555 899 99999999999985 4779999999884
No 43
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.01 E-value=2.2e-06 Score=88.49 Aligned_cols=55 Identities=29% Similarity=0.713 Sum_probs=41.3
Q ss_pred CCCCcceeccccccCCCceEEecCC---CCCccceechhhHHHHHhhhCC---------ccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTIKGN---------KTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~---CKGsLh~fH~~Cl~kWL~~kg~---------~tCpICr~~~~ 307 (508)
++...|.||++.+.+++..-...|. |+ |.||..||.+||+...+ ..||.|++.+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4566799999988764544444453 55 99999999999987533 58999999774
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.92 E-value=3.6e-06 Score=70.72 Aligned_cols=48 Identities=31% Similarity=0.645 Sum_probs=39.3
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhh-CCccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIK-GNKTCDVCKQDVQ 307 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~k-g~~tCpICr~~~~ 307 (508)
+..|.||++.+.+ ...++|+ |.||..|+.+|+..+ +...||+|+..+.
T Consensus 21 ~~~C~IC~~~~~~---p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC---eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999988753 4568999 999999999999863 3458999999875
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.87 E-value=8.4e-06 Score=70.16 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=40.9
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+. +...++|+ |.|+..||.+|+..+ +..||+|+..+.
T Consensus 16 ~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 64 (118)
T 3hct_A 16 ESKYECPICLMALR---EAVQTPCG-----HRFCKACIIKSIRDA-GHKCPVDNEILL 64 (118)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred CCCCCCCcCChhhc---CeEECCcC-----ChhhHHHHHHHHhhC-CCCCCCCCCCcC
Confidence 45678999998775 35778998 999999999999875 349999999885
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.87 E-value=1.1e-05 Score=66.05 Aligned_cols=56 Identities=23% Similarity=0.480 Sum_probs=42.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLP 310 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp 310 (508)
+++..|.||++.+.. .+...+||.|. |.|++.|+.+|... ++..||+||..+..-+
T Consensus 9 ~~~~~CpICle~~~~-~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI-DDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCT-TTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcc-ccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCc
Confidence 456789999998753 33456665553 99999999999754 5789999999997544
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.85 E-value=6.5e-06 Score=74.51 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=40.3
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+. ++..++|+ |.|+..||.+|+.. +...||+|+..+.
T Consensus 77 ~~~~C~IC~~~~~---~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVY---QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred cCCEeecCChhhc---CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCC
Confidence 3467999998775 36678999 99999999999986 3558999999885
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.83 E-value=2.2e-06 Score=73.15 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=41.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+. ++..++|+ |.||..||.+|+.. ++..||+|+..+.
T Consensus 13 ~~~~~C~iC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILV---EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCS---SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccC---ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccC
Confidence 34678999998775 36778999 99999999999975 4679999999885
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.80 E-value=1e-05 Score=69.11 Aligned_cols=48 Identities=21% Similarity=0.517 Sum_probs=40.4
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+. ++..++|+ |.||..||.+|+... +..||+|+..+.
T Consensus 22 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILA---DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhc---CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCC
Confidence 3567999998875 36668999 999999999999874 568999999885
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.68 E-value=2.4e-05 Score=81.49 Aligned_cols=48 Identities=21% Similarity=0.567 Sum_probs=41.0
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
...|.||++.+. ++..+||+ |.||..|+..|+.. ++..||+||..+..
T Consensus 332 ~~~C~ICle~~~---~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC---CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 468999998764 47789999 99999999999984 37799999998864
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.66 E-value=5.6e-05 Score=62.16 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=41.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.++..|.||++-+. ++..++|+ |.|-+.||.+|+.. +.+||+|+..+.
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCC
T ss_pred chheECcccCchhc---CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCC
Confidence 36789999997765 48889998 99999999999986 679999999875
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.63 E-value=7.8e-06 Score=62.02 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
+++..|.||++.+.+ +..++|+ |.|+..|+.+| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC---eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEee
Confidence 456779999988763 5679999 99999999885 668999999875
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.59 E-value=9.3e-05 Score=62.92 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=41.7
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.++..|.||++-+. ++..++|+ |.|-+.||.+|+.. +.+||+|+..+.
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCC
T ss_pred cHhhCCcCccCccc---CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCC
Confidence 36789999997765 48889998 99999999999985 789999999875
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.53 E-value=4.5e-05 Score=59.36 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=38.5
Q ss_pred CCCCcceeccccccCCCceEEe--cCCCCCccce-echhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKL--ECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~L--PC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+.+..|.||++... +...+ ||+ |. +-.+|+.+|.+. +..||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~---~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPR---DGNIIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBS---CEEEEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCC---CeEEEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 34567999997653 23344 999 98 899999999876 5789999998864
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.46 E-value=4.6e-05 Score=68.37 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=40.2
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
+++..|.||++.+.+ +..++|+ |.|+..||.+|++. ++..||+|+..+
T Consensus 29 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcC---cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 467789999987753 5678999 99999999999975 356999999976
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.44 E-value=6.5e-05 Score=58.66 Aligned_cols=48 Identities=31% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCCcceeccccccCCCceEEe--cCCCCCccce-echhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKL--ECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~L--PC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
++..|.||++... +...+ ||+ |. +=.+|+.+|.+. +..||+||..+..
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC---CEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 4557999997754 24444 999 99 458999999976 6789999998864
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.40 E-value=2.5e-05 Score=62.38 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=37.2
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
++..|.||++.+. +...+||+ |. |...|+.+| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~---~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI---AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC---CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC---CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4568999997754 47788999 99 999999999 689999998864
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.40 E-value=2.3e-05 Score=67.36 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=37.9
Q ss_pred CCCcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++.+. ++..+ +|+ |.|+..||.+|+. ..||+|+..+.
T Consensus 21 ~~~~C~IC~~~~~---~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILR---EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCS---SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhh---CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 4577999998875 35666 899 9999999999987 67999999874
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.36 E-value=0.00017 Score=68.61 Aligned_cols=48 Identities=4% Similarity=-0.036 Sum_probs=40.5
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
++..|.||++-+. ++++++|+ |.|-+.||.+|+... ..+||+|+..+.
T Consensus 207 ~~~~c~i~~~~~~---dPv~~~~g-----h~f~~~~i~~~~~~~-~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPCITPSG-----ITYDRKDIEEHLQRV-GHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCS---SEEECSSC-----CEEETTHHHHHHHHT-CSSCTTTCCCCC
T ss_pred cccCCcCcCCHhc---CCeECCCC-----CEECHHHHHHHHHHC-CCCCcCCCCCCc
Confidence 5678999997765 48889998 999999999999874 345999999885
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.21 E-value=0.00049 Score=58.26 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=41.0
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.++..|.||++-+. ++..++|+ | |.|-+.||.+|+.. +.+||+|+..+.
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCC
T ss_pred cHhcCCcCcccccc---CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCC
Confidence 36789999997765 47888876 2 88999999999986 679999999885
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.13 E-value=0.00033 Score=63.46 Aligned_cols=50 Identities=26% Similarity=0.461 Sum_probs=41.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
+++..|.||++.+.+ +..++|+ |.|...|+.+|+..+ ..+||+|+..+..
T Consensus 16 ~~~~~C~IC~~~~~~---pv~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALRE---AVQTPCG-----HRFCKACIIKSIRDA-GHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTS-----CEEEHHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcC---cEECCCC-----CHHHHHHHHHHHHhC-CCCCCCCccCcch
Confidence 456789999987753 5678888 999999999999875 3499999988753
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00045 Score=57.54 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=39.7
Q ss_pred CCCCcceeccccccCCCceEEec-CCCCCccceechhhHHHHHhhh----CCccccc--cccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLE-CSCKGELALAHKECAVKWFTIK----GNKTCDV--CKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LP-C~CKGsLh~fH~~Cl~kWL~~k----g~~tCpI--Cr~~ 305 (508)
.++..|.||++-+. ++..++ |+ |.|-+.||.+|+... +..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~---dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK---KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS---SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc---CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45678999997775 478886 99 999999999999874 3569999 9865
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00046 Score=54.65 Aligned_cols=46 Identities=24% Similarity=0.445 Sum_probs=37.1
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCccccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
+++..|.||++... +...+||. |. |-..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCC---CEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 45678999997643 47789999 99 99999983 46899999998753
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.96 E-value=0.00058 Score=64.27 Aligned_cols=49 Identities=6% Similarity=-0.002 Sum_probs=41.5
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
.++..|.||++-+. ++..++|+ |.|=+.||.+|+...+. +||+|+..+.
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCC
T ss_pred cHhhcccCccccCC---CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCC
Confidence 36789999997765 48888998 99999999999987544 7999999875
No 65
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.93 E-value=0.00057 Score=66.57 Aligned_cols=49 Identities=27% Similarity=0.638 Sum_probs=37.8
Q ss_pred CCcceeccccccCCCceEEecCC-CCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~-CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
-..|.||..-...+ ..|. |. +.||..|+.+|++.+++..||.|+....+
T Consensus 180 i~~C~iC~~iv~~g-----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG-----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC-----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCC-----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45699998665432 2232 44 99999999999998878899999998754
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=8.7e-05 Score=59.14 Aligned_cols=44 Identities=27% Similarity=0.603 Sum_probs=35.4
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
++..|.||++.+. +...+||+ |. |...|+.+ ...||+||..+..
T Consensus 24 ~~~~C~IC~~~~~---~~~~~pCg-----H~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI---AIVFVPCG-----HLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC---CBCCSSSC-----CCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC---CEEEecCC-----CHHHHHHHhhC------CCCCccCCceecC
Confidence 3567999997754 46678999 99 99999953 3689999998864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.87 E-value=0.00064 Score=56.08 Aligned_cols=50 Identities=20% Similarity=0.511 Sum_probs=38.6
Q ss_pred CCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhhh---C---Cccccc--ccccc
Q 010537 251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIK---G---NKTCDV--CKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~k---g---~~tCpI--Cr~~~ 306 (508)
+...|.||++++... .... .+|+ |.|-++|+.+++..+ | ...||. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE-QMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGG-GEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccc-cceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 456799999887643 3444 4799 999999999999764 2 358999 99873
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.28 E-value=0.00096 Score=68.30 Aligned_cols=44 Identities=25% Similarity=0.706 Sum_probs=37.4
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCcccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
++..|.||++.+. +...+||+ |. |...|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC---ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 4578999998764 47788999 99 999999998 579999998864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.003 Score=62.98 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=41.6
Q ss_pred CCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhhhCCccccc--cccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIKGNKTCDV--CKQDVQ 307 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpI--Cr~~~~ 307 (508)
..+..|.||++-+. +++. ..|+ |.|=+.||.+|+...+...||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc---CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 35678999998775 3555 4899 9999999999998766789999 999775
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.02 E-value=0.0044 Score=48.25 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=38.0
Q ss_pred CcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHhhhCCcccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQN 308 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~n 308 (508)
..|.||++-+. ++..+ +|+ |.|=+.||++||+. +.+||++++.+..
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG-----~~yer~~I~~~l~~--~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSR-----TIFEKSLLEQYVKD--TGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTT-----EEEEHHHHHHHHHH--HSBCTTTCCBCCG
T ss_pred EEecCCCCCCC---CCEEeCCCC-----cEEcHHHHHHHHHh--CCCCcCCcCCCCh
Confidence 46999987765 46777 788 99999999999987 4569999998853
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.70 E-value=0.0021 Score=52.22 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=36.6
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccce-echhhHHHHHhhhCCccccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELAL-AHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~-fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
++..|.||++... +...+||+ |. |=..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~---~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEI---NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBC---CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccC---cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 3467999997654 47789999 99 889999887 3899999998753
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.67 E-value=0.054 Score=43.13 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=35.8
Q ss_pred CCCCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhh--hCCcccccccccccccc
Q 010537 248 IPEEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDVQNLP 310 (508)
Q Consensus 248 ~~eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~~~~nvp 310 (508)
.+..+..|.||... ++++. -.|. ..||..|++..+.. ++...|+.|.......|
T Consensus 8 ~~~~~~~C~vC~~~----~~ll~Cd~C~-----~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 8 NLAPGARCGVCGDG----TDVLRCTHCA-----AAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp CCCTTCCCTTTSCC----TTCEECSSSC-----CEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred CCCCCCCcCCCCCC----CeEEECCCCC-----CceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 34456779999742 23222 2244 89999999888754 36679999987654333
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.99 E-value=0.1 Score=45.28 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=38.9
Q ss_pred ceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccccccc
Q 010537 255 CRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNLPV 311 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nvp~ 311 (508)
|-+|--.+. --.+.+||+ |.|=.+|+..|.+. +.++||.|+..+..+..
T Consensus 4 C~~C~~Pi~--iygRmIPCk-----HvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIPCK-----HVFCYDCAILHEKK-GDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp CTTTCSBCS--EEEEEETTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCSEEEE
T ss_pred cCccCCCeE--EEeeecccc-----ccHHHHHHHHHHhc-cCCCCcCcCCeeeeeEE
Confidence 666654443 346789999 99999999999865 37899999999987754
No 74
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.26 E-value=0.64 Score=39.31 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=31.1
Q ss_pred CCCCCCcceeccccccCCCceEEecC---CCCCccceechhhHHHHHhh--hCCcccccccccc
Q 010537 248 IPEEEAVCRICLVELGEGGDMFKLEC---SCKGELALAHKECAVKWFTI--KGNKTCDVCKQDV 306 (508)
Q Consensus 248 ~~eee~~CrICl~e~ee~e~~l~LPC---~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~~~ 306 (508)
.+++...| ||..... ++ .+.| .|+. .+||..|+. |.. +++-.||.|+..-
T Consensus 32 d~~e~~yC-iC~~~~~-g~---MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSY-GE---MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCBCS-TTCCBCC-SC---CCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCcEE-ECCCCCC-CC---EeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44566778 9976432 22 2333 3542 689999987 332 3567999997654
No 75
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=81.73 E-value=0.54 Score=39.14 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=35.1
Q ss_pred CCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
.+++..|.||.....++ ....+-|. +--..||..|+..=..-.|...|+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~-~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQN-SNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCS-EEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCC-CCCEEECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567899998653222 22334443 222789999987544555778999998754
No 76
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.14 E-value=0.39 Score=38.20 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=31.5
Q ss_pred CCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhhh--CCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTIK--GNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~k--g~~tCpICr~~~ 306 (508)
++...|.||..... ++..+. -.|. .+||..|+..-.... +.-.|+.|....
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~-----~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCD-----DWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSS-----SEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCC-----cccccccCCCCccCCCCCCEEChhccCch
Confidence 45567999976542 222221 1244 999999986543321 466899998765
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.01 E-value=0.77 Score=36.93 Aligned_cols=52 Identities=31% Similarity=0.677 Sum_probs=32.7
Q ss_pred CCCCcceeccccccCCCceEEecCC-CCCccceechhhHHHHHhhhCCccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECS-CKGELALAHKECAVKWFTIKGNKTCDVCKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~-CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~ 305 (508)
.++..|.||.....++++.+ +-|. |. ..||..|+..=..-+|...|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~l-l~CD~C~---~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVI-LFCDMCN---LAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCE-EECSSSC---CEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCE-EECCCCC---CccccccCCCCcCCCCCcCCccCcCc
Confidence 45677999986542222222 2222 32 79999998754445577889999753
No 78
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.73 E-value=0.3 Score=40.62 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=35.1
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh------hhCCccccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT------IKGNKTCDVCKQDVQ 307 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~------~kg~~tCpICr~~~~ 307 (508)
++..|.||.....++++.+++==.|. ..||..|+..=+. -++...|+.|.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46789999865433222332211232 8999999986653 356789999987664
No 79
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.79 E-value=0.73 Score=35.66 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCCCCcceeccccccCCCc-eEE-ecCCCCCccceechhhHHHHHh-----hhCCcccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGD-MFK-LECSCKGELALAHKECAVKWFT-----IKGNKTCDVCKQDV 306 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~-~l~-LPC~CKGsLh~fH~~Cl~kWL~-----~kg~~tCpICr~~~ 306 (508)
+.++..|.||.....++++ ++. -.|. ..||..|+..=+. .++...|+.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~-----~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCG-----QGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSC-----CEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCC-----hHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 3466789999866433222 222 2244 8899999876432 34678999997643
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=71.55 E-value=1.4 Score=34.16 Aligned_cols=47 Identities=19% Similarity=0.540 Sum_probs=30.8
Q ss_pred CCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHh--hhCCccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~ 305 (508)
+.+..|.||... ++++. -.|. ..||..|+..=+. -++...|+.|...
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~-----~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCP-----RAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSS-----CEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCC-----hhhhhhccCCCCCCCCCCceECcccccc
Confidence 346789999752 22222 2233 8999999987442 3467799999753
No 81
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=70.21 E-value=1.2 Score=40.31 Aligned_cols=51 Identities=20% Similarity=0.475 Sum_probs=31.0
Q ss_pred CCCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHHh---hhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWFT---IKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL~---~kg~~tCpICr~~~ 306 (508)
++...| ||...+.+++. .+.| .|. .+||..|+.---. ..+.-.|+.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~--mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKF--YIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSC--EEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCC--EeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 456789 99876543322 2223 233 9999999852211 23567999998753
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=70.16 E-value=0.81 Score=42.07 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=31.6
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhh--hCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~~~ 306 (508)
.++.|.+|... ++ .+-|. +.-..||..|+..-+.. +|...|+.|+..-
T Consensus 3 ~~~~C~~C~~~----g~--ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GE--LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SS--CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----Ce--eeecC--CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999743 22 23332 22289999998766543 4667999998754
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=68.13 E-value=0.72 Score=43.36 Aligned_cols=48 Identities=27% Similarity=0.511 Sum_probs=31.9
Q ss_pred CCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh--hhCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~~ 306 (508)
.++.|.+|... ++ .+-|. +.-..||..|+..-+. -+|...|+.|+..-
T Consensus 6 ~~~~C~~C~~~----g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG----GD--LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC----EE--EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC----Cc--eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999743 22 33332 3338999999977654 24667999998754
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.57 E-value=1.3 Score=37.54 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT 292 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~ 292 (508)
..++.|.||....+.++.+.=-.|. ..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~-----~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCG-----QHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSC-----CEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCC-----CCcChHHhCCccc
Confidence 3567899997653211111112344 8999999987764
No 85
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=67.36 E-value=1.1 Score=35.40 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=27.4
Q ss_pred CCCCCcceeccccccCCCceEEecC---CCCCccceechhhHHHHHhh------hCCcccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLEC---SCKGELALAHKECAVKWFTI------KGNKTCDVCKQ 304 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC---~CKGsLh~fH~~Cl~kWL~~------kg~~tCpICr~ 304 (508)
+++...| ||...... + ..+-| .|+ .+||..|+--=-.. -.+-.|+.||.
T Consensus 7 ~e~~v~C-~C~~~~~~-g--~mI~CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVN-D--SMIQCEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SSCEECC-TTCCCSCC-S--CEEECSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCEEe-ECCCCcCC-C--CEEEECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4455667 78544332 2 24446 376 89999997210000 01357999974
No 86
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.90 E-value=0.86 Score=34.54 Aligned_cols=47 Identities=26% Similarity=0.505 Sum_probs=28.9
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh--hhCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~ 304 (508)
..+..|.||... ++.+.--.|. ..||..|+..=+. -++...|+.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~-----~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCS-----RVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSS-----CEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCC-----cceECccCCCCcCCCCCCceEChhhhC
Confidence 456779999753 2222212244 8999999875432 235567888854
No 87
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.77 E-value=1.8 Score=34.66 Aligned_cols=50 Identities=28% Similarity=0.612 Sum_probs=30.8
Q ss_pred CCCCCCcceeccccccCCCceEEecCC---CCCccceechhhHHHHHhh--hCCcccccccccc
Q 010537 248 IPEEEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTI--KGNKTCDVCKQDV 306 (508)
Q Consensus 248 ~~eee~~CrICl~e~ee~e~~l~LPC~---CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~~~ 306 (508)
.+++...| ||..... +. .+.|- |.. .+||..|+. |.. ++.-.||.|...-
T Consensus 12 d~~~~~~C-~C~~~~~--g~--MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY--GE--MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC--SS--EECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC--CC--EeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34456778 8975432 22 33333 542 589999997 432 2567899997644
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.64 E-value=0.76 Score=38.50 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHH--hhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWF--TIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL--~~kg~~tCpICr~~~ 306 (508)
.+...|.||.....+ +.++. -.|. ..||..|+..=+ .-++...|+.|....
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~-----~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCD-----DNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTC-----CEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCC-----chhccccCCCCcccCCCCCcCCccCcCcc
Confidence 345679999865432 12222 2244 889999986322 123566899997653
No 89
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=66.52 E-value=1.9 Score=36.35 Aligned_cols=47 Identities=23% Similarity=0.584 Sum_probs=26.2
Q ss_pred CCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHHh-hhCCcccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWFT-IKGNKTCDVCKQ 304 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL~-~kg~~tCpICr~ 304 (508)
+...| ||.....++ .+ +-| .|. .+||..|+..=.. ....-.|+.|+.
T Consensus 27 d~vrC-iC~~~~~~~--~m-i~Cd~C~---~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG--YM-ICCDKCS---VWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS--CE-EEBTTTC---BEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC--cE-EEcCCCC---CcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 786544322 22 222 233 8999999853111 113469999974
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.18 E-value=5 Score=32.26 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHHhh---hCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWFTI---KGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL~~---kg~~tCpICr~~~ 306 (508)
++...| ||...+.+++. .+.| .|. .+||..|+.-=-.. -..-.|+.|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~--MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHF--MIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSC--EEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCc--eEEcCCCC---CcEEeeecCcccccccCCCeEECCCccccc
Confidence 345567 88776542222 2222 233 99999998532211 1456899998754
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=64.80 E-value=4.2 Score=36.97 Aligned_cols=45 Identities=20% Similarity=0.491 Sum_probs=31.4
Q ss_pred CCCcceeccccccCCCceEEe-cCCCCCccceechhhHHHHHh---------hhCCcccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKL-ECSCKGELALAHKECAVKWFT---------IKGNKTCDVCKQ 304 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~L-PC~CKGsLh~fH~~Cl~kWL~---------~kg~~tCpICr~ 304 (508)
.++.|+||.+. ++++-- .|. ..||..|++.=+. ..+...|+.|..
T Consensus 62 ~~d~C~vC~~G----G~LlcCD~Cp-----r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG----GNLICCDFCH-----NAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC----SSEEECSSSC-----CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC----CcEEeCCCCC-----CeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45679999743 333322 244 9999999997552 357889999974
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=64.57 E-value=0.95 Score=35.03 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=29.6
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh--hhCCccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~ 305 (508)
..+..|.||... ++ .+-|. +--..||..|+..=+. -++...|+.|...
T Consensus 7 ~~~~~C~vC~~~----g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GE--LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC----SS--CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC----CC--EEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 356779999742 22 22222 2227899999875433 2356689999764
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.85 E-value=4.4 Score=31.07 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhh---hCCccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI---KGNKTCDVCKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~---kg~~tCpICr~~ 305 (508)
+++..|.||...+.+++..+. -.|. .+||..|+.--... -..-.|+.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~-----~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCE-----MWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSC-----CEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCC-----CCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 466789999877653332222 1243 99999998543221 135689999764
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.65 E-value=1.3 Score=34.66 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=30.7
Q ss_pred CCCCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHh--hhCCccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQD 305 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~ 305 (508)
+..+..|.||... ++++. -.|. ..||..|+..=+. -++...|+.|...
T Consensus 5 ~~~~~~C~vC~~~----g~ll~CD~C~-----~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG----GELICCDGCP-----RAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC----SSCEECSSCC-----CEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC----CCEEEcCCCC-----hhhcccccCCCcCcCCCCCeECccccCc
Confidence 3456789999853 22222 2244 8999999875432 2356789999753
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=60.75 E-value=2.3 Score=31.24 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=27.3
Q ss_pred CcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHh--hhCCcccccccc
Q 010537 253 AVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQ 304 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~ 304 (508)
+.|.||.....+ +..+. -.|. ..||..|+..=+. -++...|+.|..
T Consensus 1 a~C~vC~~~~~~-~~ll~Cd~C~-----~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGED-DKLILCDECN-----KAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCC-SCCEECTTTC-----CEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CCEEECCCCC-----hhhCcccCCCCcCCCCCCcEECcCccc
Confidence 358999765332 22222 2244 8999999864222 234567998864
No 96
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.28 E-value=7.5 Score=34.79 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=30.3
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHH------h---hhCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWF------T---IKGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL------~---~kg~~tCpICr~ 304 (508)
..+..|+||.+. ++++- | .+--..||.+|+.+=+ + ..+...|.+|..
T Consensus 55 g~~~~C~vC~dG----G~Llc--C--d~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG----GNLIC--C--DFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC----SEEEE--C--SSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC----CeeEe--c--CCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999743 33332 2 2223899999999742 2 356789999954
No 97
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=59.01 E-value=3.6 Score=35.63 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=28.1
Q ss_pred CCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhh--hCCccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTI--KGNKTCDVCK 303 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr 303 (508)
+++++.|.+|.. +++ .+-|..++--..||..|+. |.. +|+..||-|.
T Consensus 12 ~~~~~~C~~C~~----~G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CSSCSSCTTTCC----CSE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCCCcCCC----CCc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 346678999972 222 4556521222799999997 433 3455666554
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=58.49 E-value=9.2 Score=30.34 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=28.8
Q ss_pred CCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHHh-------hhCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWFT-------IKGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL~-------~kg~~tCpICr~~~ 306 (508)
....| ||...+. ++ .+ +.| .|+ .+||..|+.-=.. ....-.|+.|+...
T Consensus 15 ~~~~C-~C~~~~~-~~-~M-I~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHN-NR-FM-ICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCC-SS-CE-EECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccC-CC-CE-EEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 45667 8876543 22 22 222 233 9999999842111 23467999998654
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=55.23 E-value=7.1 Score=30.70 Aligned_cols=33 Identities=27% Similarity=0.636 Sum_probs=21.2
Q ss_pred CCCCcceeccccccCCCceEEecC--CCCCccceechhhH
Q 010537 250 EEEAVCRICLVELGEGGDMFKLEC--SCKGELALAHKECA 287 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC--~CKGsLh~fH~~Cl 287 (508)
+....|.+|...+.+++ ..+.| .|+ .+||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~--~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQ--DAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTS--CEEEBTTTTC---CEEEHHHH
T ss_pred CCcCcCccCCCccCCCC--CeEecccCcc---ccCchhcc
Confidence 34567999998875432 33444 355 99999997
No 100
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=54.03 E-value=36 Score=33.38 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 010537 397 SYIWAYASFQFAVVILFAHIFYSV 420 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h~fy~~ 420 (508)
+|++.+...-|.+++-+..++..+
T Consensus 81 E~l~al~~~~~l~~~~~~i~~eai 104 (306)
T 3j1z_P 81 EPLAALAQSAFIMGSAFLLLFYGG 104 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677776554444443333333333
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.95 E-value=13 Score=31.78 Aligned_cols=53 Identities=30% Similarity=0.612 Sum_probs=36.2
Q ss_pred CCCcceecccccc--CCCceEE--ecCCCCCccceechhhHHHHHhhhCCccccccccccccc
Q 010537 251 EEAVCRICLVELG--EGGDMFK--LECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQNL 309 (508)
Q Consensus 251 ee~~CrICl~e~e--e~e~~l~--LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~nv 309 (508)
...+|.||-++.+ +++++++ ..|. --+=+.|.+-=.+ .|+..||.|+..|+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErk-eG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERR-EGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHH-TSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHh-ccCccccccCCccccc
Confidence 3468999987754 3334443 2344 4467789876554 4899999999999743
No 102
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=50.15 E-value=6.2 Score=33.86 Aligned_cols=35 Identities=23% Similarity=0.448 Sum_probs=20.5
Q ss_pred CcceeccccccC----CCceEEecCC-CCCccceechhhHHHH
Q 010537 253 AVCRICLVELGE----GGDMFKLECS-CKGELALAHKECAVKW 290 (508)
Q Consensus 253 ~~CrICl~e~ee----~e~~l~LPC~-CKGsLh~fH~~Cl~kW 290 (508)
+.|.||+....+ ++....+-|. |. ..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~---~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG---RSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC---CEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC---CccchhhCCCh
Confidence 469999875421 1111223332 22 88999999865
No 103
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.00 E-value=16 Score=29.23 Aligned_cols=51 Identities=22% Similarity=0.526 Sum_probs=29.6
Q ss_pred CCCCCcceeccccccCCCceEEecCC---CCCccceechhhHHHHHhh-------hCCcccccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTI-------KGNKTCDVCKQDV 306 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC~---CKGsLh~fH~~Cl~kWL~~-------kg~~tCpICr~~~ 306 (508)
+++...| ||..... ++ ..+.|- |+ .+||..|+--=-.. ...-.|+.|+..-
T Consensus 13 ~~~~~~C-iC~~~~~-~g--~MI~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 13 PEIKVRC-VCGNSLE-TD--SMIQCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCCC-SSCCCCC-CS--CEEECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCCEEe-ECCCcCC-CC--CEEEECCccCC---ccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3456678 7875522 22 344454 55 79999997421111 1256899998643
No 104
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=48.96 E-value=8 Score=32.97 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=32.0
Q ss_pred CcceeccccccCCCceEEecC-CCCCccceechhhHHH----H--H--hhhCCcccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVK----W--F--TIKGNKTCDVCKQDV 306 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~k----W--L--~~kg~~tCpICr~~~ 306 (508)
..|.||...+.+++ .++.=| .|+ .+||..|+.- . + ...+.-.||.|...-
T Consensus 4 ~~C~iC~~p~~~~~-~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ-DAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTS-CEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCC-CEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 35999998875433 233333 676 9999999841 1 0 011456899999764
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=48.93 E-value=5.4 Score=43.64 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=8.5
Q ss_pred hhHHHHHHH---------HHHhhh
Q 010537 443 TNSLIVEYL---------RWRMSR 457 (508)
Q Consensus 443 ~n~~~~e~~---------~wr~~~ 457 (508)
.|.+|.... .|+.+-
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~ 51 (727)
T 4b8c_D 28 SNPLLHPHLDDPSLLNNPIWKLQL 51 (727)
T ss_dssp SCTTTSGGGTSCCCTTSHHHHHHH
T ss_pred CCccccCCCCCchhccCchHHHHH
Confidence 445555554 777644
No 106
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=48.62 E-value=3.1 Score=32.09 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=27.6
Q ss_pred CCCCcceeccccccCCCceEEecC---CCCCccceechhhHHHHHhh--hCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLEC---SCKGELALAHKECAVKWFTI--KGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC---~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~ 304 (508)
++...| ||..... +. .+.| .|+. .+||..|+. |.. ++.-.||.|..
T Consensus 8 ~e~~~C-~C~~~~~--g~--mi~CD~cdC~~--~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSY--GE--MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECC--SE--EEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCC--CC--EEEeCCCCCCC--ceEehhcCC--CCcCCCCCEECcCccC
Confidence 455677 8975432 22 3333 3542 689999987 433 25668998864
No 107
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=45.68 E-value=2.9 Score=35.19 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccc-ccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDV-CKQ 304 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpI-Cr~ 304 (508)
+++...| ||..... ++.+.-=.|.|.. .+||..|+.-=-...+.-.||. |..
T Consensus 23 ~~~~~yC-iC~~~~~-g~MI~CD~c~C~~--eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GPMVACDNPACPF--EWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS-SSEECCCSSSCSC--SCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC-CCEEEecCCCCcc--ccCcCccCCCCcCCCCCccCChhhcc
Confidence 3456778 8975422 2211112255653 6899999851111235678999 974
No 108
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.55 E-value=6.5 Score=33.06 Aligned_cols=48 Identities=21% Similarity=0.539 Sum_probs=30.8
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh--hhCCccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~ 305 (508)
+.++.|.+|... ++++. | .+--..||..|+..=+. -+|...|+.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~--C--D~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVM--C--NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEE--C--TTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEE--C--CCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999753 22222 2 22338999999865442 2366789999854
No 109
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=44.27 E-value=3.4 Score=31.53 Aligned_cols=47 Identities=26% Similarity=0.583 Sum_probs=29.7
Q ss_pred CCCcceeccccccCCCceEE-ecCCCCCccceechhhHHHHHh--hhCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~~ 306 (508)
.+..|.||... + .++. -.|. ..||..|+..=+. -++...|+.|....
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~-----~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCS-----RVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSS-----CEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCC-----cCEECCcCCCCcCCCCCCceEChhccChh
Confidence 45679999753 2 2222 2244 8999999885332 23566899997543
No 110
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=43.44 E-value=25 Score=36.72 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHh
Q 010537 426 ILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 426 v~~illa~f~gfg~~m~ 442 (508)
++.+++|+++|..+.+.
T Consensus 418 ~~~~~~a~~~g~~~p~~ 434 (473)
T 2zy9_A 418 VLIVFFANLVGAMLPFL 434 (473)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.83 E-value=11 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.506 Sum_probs=20.1
Q ss_pred CCcceecccccc-----CCCceEE-ecCCCCCccceechhhHHH
Q 010537 252 EAVCRICLVELG-----EGGDMFK-LECSCKGELALAHKECAVK 289 (508)
Q Consensus 252 e~~CrICl~e~e-----e~e~~l~-LPC~CKGsLh~fH~~Cl~k 289 (508)
...|.+|+.... .+++++. ..|. ..||..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~-----~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCG-----NSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTC-----CEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcC-----CCCCCchhcC
Confidence 457999986532 1222222 2244 8999999963
No 112
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=39.44 E-value=7 Score=41.73 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHHhh---hCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWFTI---KGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL~~---kg~~tCpICr~~~ 306 (508)
+...| ||...+..++ .+ +.| .|. .+||..|+.-=-.. -+.-.|+.|+...
T Consensus 36 ~~~yC-~C~~~~d~~~-~M-IqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNR-FM-IECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTS-CE-EEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCC-Ce-EEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 34455 7765543222 22 223 344 99999998421111 1345899998754
No 113
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=39.37 E-value=4 Score=38.01 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=30.3
Q ss_pred CCcceeccccccCCCceEEecCCCCCccceechhhHHHHHh--hhCCcccccccccc
Q 010537 252 EAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQDV 306 (508)
Q Consensus 252 e~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~~ 306 (508)
++.|.+|... ++ .+-| .+.-..||..|+..=+. -+|...|+.|....
T Consensus 2 ~~~C~~C~~~----g~--ll~C--d~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP----GD--LVMC--NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC----SS--CCCC--TTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC----Cc--eeEC--CCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4579999743 22 2223 33338999999865332 24677899998763
No 114
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=38.27 E-value=2.7e+02 Score=26.52 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHhHHHHHHh
Q 010537 424 NPILAVLLSSFTGFGIAIS 442 (508)
Q Consensus 424 ~~v~~illa~f~gfg~~m~ 442 (508)
+..+.+++..+.||+.++.
T Consensus 345 ~~~~~~~~~~~~g~~~~~~ 363 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGP 363 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHhch
Confidence 3334444444555554443
No 115
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=38.00 E-value=13 Score=32.12 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=33.0
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCccccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDVQ 307 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~~ 307 (508)
..|..|.-+.. . ...|+ -|++=..|+..-|+. +..||||++.+.
T Consensus 29 ~nCKsCWf~~k----~-LV~C~----dHYLCl~CLtlmL~~--SdrCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFENK----G-LVECN----NHYLCLNCLTLLLSV--SNRCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSCCS----S-EEECS----SCEEEHHHHHHTCSS--SSEETTTTEECC
T ss_pred ccChhhccccC----C-eeeec----chhhHHHHHHHHHhh--ccCCcccCCcCC
Confidence 45999975432 1 34555 299999999988877 789999999884
No 116
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.38 E-value=6.9 Score=31.19 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCcceeccccccCCCceEEecCCCCCccceechhhHHHHHhhhCCcccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFTIKGNKTCDVCKQDV 306 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~~kg~~tCpICr~~~ 306 (508)
++...| ||.... .++.+.---|.|.. .+||..|+.-=-...+.-.||.|....
T Consensus 4 ~~~~yC-~C~~~~-~g~MI~CD~cdC~~--~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYC-ICNQVS-YGEMVGCDNQDCPI--EWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCS-TTSCCC-CSSEECCSCTTCSC--CCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCeEE-EcCCCC-CCCEeEeCCCCCCc--cCCcccccccCcCCCCCEECCCCCccc
Confidence 455567 476542 22111112244532 789999986211123456899998754
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=36.20 E-value=22 Score=27.90 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=27.8
Q ss_pred CCCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHH--hhhCCccccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWF--TIKGNKTCDVCKQD 305 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL--~~kg~~tCpICr~~ 305 (508)
++...| ||.....+++ .+ +.| .|. .+||..|+.-=- .....-.|+.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~-~m-I~Cd~C~---~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGE-RM-LACDGCG---VWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSS-CE-EECSSSC---EEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCC-cE-EECCCCC---CccCCeeeccCccccCCCcEECCCccCC
Confidence 345678 7876543322 22 222 232 999999975321 01234589998764
No 118
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=35.80 E-value=1.9e+02 Score=32.11 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh
Q 010537 397 SYIWAYASFQFAVVILFAHIFYSVL 421 (508)
Q Consensus 397 ~y~W~ya~~qF~lvvlf~h~fy~~~ 421 (508)
...|-...+-+.+++.+.+++|++.
T Consensus 62 ~~~~~~~~~~~~~~~~~~y~~wr~~ 86 (802)
T 4hg6_A 62 KMVPRFLLLSAASMLVMRYWFWRLF 86 (802)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhh
Confidence 3447666777777888888888775
No 119
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=33.13 E-value=9.1 Score=37.26 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=24.6
Q ss_pred CcceeccccccCCCceEEecCCCCCccceechhhHHHHHh--hhC-Cccccccccc
Q 010537 253 AVCRICLVELGEGGDMFKLECSCKGELALAHKECAVKWFT--IKG-NKTCDVCKQD 305 (508)
Q Consensus 253 ~~CrICl~e~ee~e~~l~LPC~CKGsLh~fH~~Cl~kWL~--~kg-~~tCpICr~~ 305 (508)
..|.+|..... ++. .|-|. +.-..||..|+..=|. -+| ...|+.|...
T Consensus 175 c~C~vC~~~~~-~~~--lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQD-PDK--QLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC---C--CEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcCCCCCCC-CCC--eEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 36888865322 222 22232 2228999999984332 235 5689999753
No 120
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=33.02 E-value=2.6e+02 Score=26.96 Aligned_cols=47 Identities=9% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 407 FAVVILFAHIFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 407 F~lvvlf~h~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
+.+.++.+.+....++++..--+..++..|+++++....++..+..+
T Consensus 74 ~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~G 120 (285)
T 3udc_A 74 YIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISG 120 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445565544334456778888888888888888766
No 121
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.91 E-value=26 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.584 Sum_probs=22.6
Q ss_pred CCCcceeccccccCCCceEEecCC-CCCccceechhhHHHH
Q 010537 251 EEAVCRICLVELGEGGDMFKLECS-CKGELALAHKECAVKW 290 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC~-CKGsLh~fH~~Cl~kW 290 (508)
.+..|.||. .+..+ ..+||. |. ..||..|+.+=
T Consensus 14 ~D~~C~VC~-~~t~~---~l~pCRvC~---RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAE---SLFPCRVCT---RVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSS---CCSSCSSSS---SCCCHHHHHHH
T ss_pred CCcccCccc-ccccc---ceecccccc---ccccHhhcccc
Confidence 566799995 33322 256765 33 89999999885
No 122
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.98 E-value=7.9 Score=31.42 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=26.4
Q ss_pred cceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhh--hC-Ccccccccc
Q 010537 254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KG-NKTCDVCKQ 304 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~--kg-~~tCpICr~ 304 (508)
.|.||..... ++.++. -.|. ..||..|+..=|.. +| .-.|+.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~-----~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECN-----VAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSC-----CEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCC-----ccccccccCCCccCCCCCCCcCCcCccC
Confidence 7888875432 222322 2244 88999998743221 34 567888864
No 123
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.88 E-value=5.2 Score=30.84 Aligned_cols=46 Identities=30% Similarity=0.614 Sum_probs=27.4
Q ss_pred CCCCcceeccccccCCCceEEecCC---CCCccceechhhHHHHHhh--hCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLECS---CKGELALAHKECAVKWFTI--KGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC~---CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~ 304 (508)
++...| ||.... ++. .+.|- |+. .+||..|+. +.. +++-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~--~g~--mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS--YGE--MIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC--CSE--EEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC--CCC--eeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 455667 887543 222 33333 542 589999987 332 24668998864
No 124
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.33 E-value=9.9 Score=32.39 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=26.6
Q ss_pred cceeccccccCCCceEE-ecCCCCCccceechhhHHHHHhh--hCCcccccccc
Q 010537 254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFTI--KGNKTCDVCKQ 304 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~ 304 (508)
.|.||.....+++.++. -.|. ..||..|++.=|.. ++...|+.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~-----~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCD-----RGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTC-----CEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCC-----CeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57777643222222222 2244 89999998654432 35568998874
No 125
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=31.22 E-value=1.9e+02 Score=33.21 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH--hhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHHHhh
Q 010537 396 RSYIWAYASFQFAVVILFAHI--FYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRWRMS 456 (508)
Q Consensus 396 r~y~W~ya~~qF~lvvlf~h~--fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~wr~~ 456 (508)
-.|+|+-..+.+++.+++.++ +..+++..|+-..-..-+.++++.+ .++.|..+|-.|
T Consensus 962 N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~---~~~~e~~K~~~r 1021 (1034)
T 3ixz_A 962 NRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLI---FVYDEIRKLGVR 1021 (1034)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 345555555555555555443 3455666554333333344444433 256677777544
No 126
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=30.94 E-value=5.7 Score=30.93 Aligned_cols=47 Identities=30% Similarity=0.720 Sum_probs=27.6
Q ss_pred CCCCCcceeccccccCCCceEEecC---CCCCccceechhhHHHHHhh--hCCcccccccc
Q 010537 249 PEEEAVCRICLVELGEGGDMFKLEC---SCKGELALAHKECAVKWFTI--KGNKTCDVCKQ 304 (508)
Q Consensus 249 ~eee~~CrICl~e~ee~e~~l~LPC---~CKGsLh~fH~~Cl~kWL~~--kg~~tCpICr~ 304 (508)
+++...| ||.... .+. .+.| .|+ ..+||..|+. |.. ++.-.||.|+.
T Consensus 8 ~~e~~yC-~C~~~~--~g~--MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVS--YGE--MIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEEC--CSE--EEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCC--CCC--eeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 3455677 887542 222 3333 354 2799999986 322 24568998865
No 127
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=30.64 E-value=16 Score=27.09 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=25.8
Q ss_pred ceeccccccCCCceEEecCC--CCCccceechhhHHHHHh--hhCCccccccc
Q 010537 255 CRICLVELGEGGDMFKLECS--CKGELALAHKECAVKWFT--IKGNKTCDVCK 303 (508)
Q Consensus 255 CrICl~e~ee~e~~l~LPC~--CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr 303 (508)
|-||...+.++ ...+.|- |+ .+||..|+.-=-. ....-.|+.|+
T Consensus 5 cc~C~~p~~~~--~~mI~Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDK--VDWVQCDGGCD---EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTT--CCEEECTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCC--CcEEEeCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence 66787666432 2233443 55 9999999753211 12567888885
No 128
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.06 E-value=2.5e+02 Score=27.14 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=23.4
Q ss_pred HhhhhhcchhHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Q 010537 416 IFYSVLNVNPILAVLLSSFTGFGIAISTNSLIVEYLRW 453 (508)
Q Consensus 416 ~fy~~~~~~~v~~illa~f~gfg~~m~~n~~~~e~~~w 453 (508)
+....++++..--+..++.+|.++++....++..+..+
T Consensus 84 ~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~~sG 121 (286)
T 2vv5_A 84 AALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAG 121 (286)
T ss_dssp HHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344555432223345677888888888888887765
No 129
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.29 E-value=8.6 Score=30.51 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=17.8
Q ss_pred ceechhhHHHHHhh--hC-Cccccccccc
Q 010537 280 ALAHKECAVKWFTI--KG-NKTCDVCKQD 305 (508)
Q Consensus 280 h~fH~~Cl~kWL~~--kg-~~tCpICr~~ 305 (508)
..||..|+..=|.. +| .-.|+.|..+
T Consensus 41 ~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 41 MAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp CEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 89999998743322 34 5688888753
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.48 E-value=7.4 Score=33.35 Aligned_cols=47 Identities=17% Similarity=0.391 Sum_probs=27.0
Q ss_pred cceeccccccCCCceEE-ecCCCCCccceechhhHHHHHh--hhCCcccccccccc
Q 010537 254 VCRICLVELGEGGDMFK-LECSCKGELALAHKECAVKWFT--IKGNKTCDVCKQDV 306 (508)
Q Consensus 254 ~CrICl~e~ee~e~~l~-LPC~CKGsLh~fH~~Cl~kWL~--~kg~~tCpICr~~~ 306 (508)
.|.||.....+ +.++. -.|. ..||..|+..=+. -++...|+.|...+
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~-----~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCD-----RGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSC-----CEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCC-----ccccccccCCCccCCCCCCeECccccchh
Confidence 57777654322 22222 2244 8999999874222 22456788887655
No 131
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.23 E-value=11 Score=31.71 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=18.3
Q ss_pred ceechhhHHHHHh--hhCCcccccccccc
Q 010537 280 ALAHKECAVKWFT--IKGNKTCDVCKQDV 306 (508)
Q Consensus 280 h~fH~~Cl~kWL~--~kg~~tCpICr~~~ 306 (508)
..||..|+..=+. -++...|+.|....
T Consensus 77 ~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 77 KGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 8999999874332 22456788886543
No 132
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.43 E-value=42 Score=26.35 Aligned_cols=48 Identities=23% Similarity=0.605 Sum_probs=26.9
Q ss_pred CCCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHH-hhhCCcccccccc
Q 010537 250 EEEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWF-TIKGNKTCDVCKQ 304 (508)
Q Consensus 250 eee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL-~~kg~~tCpICr~ 304 (508)
.+...| ||...+. +..++ .| .|+ .+||..|+.-=- ...+.-.|+.|+.
T Consensus 17 ~~~~~C-iC~~~~~--~~~MI-qCd~C~---~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA--GRPMI-ECNECH---TWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT--TCCEE-ECTTTC---CEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC--CCCEE-ECCCCC---ccccccccCcCcccCCCcEECCCCCC
Confidence 456678 8976543 22222 22 233 999999975211 1123457888864
No 133
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.51 E-value=64 Score=25.44 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=27.0
Q ss_pred CCCcceeccccccCCCceEEecC-CCCCccceechhhHHHHHhh---hCCcccccccccc
Q 010537 251 EEAVCRICLVELGEGGDMFKLEC-SCKGELALAHKECAVKWFTI---KGNKTCDVCKQDV 306 (508)
Q Consensus 251 ee~~CrICl~e~ee~e~~l~LPC-~CKGsLh~fH~~Cl~kWL~~---kg~~tCpICr~~~ 306 (508)
+...| ||...+.+++ .+ +.| .|. .+||..|+.---.. -+.-.|+.|....
T Consensus 9 ~~~yC-iC~~~~~~~~-~M-I~Cd~C~---~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTR-FM-IECDACK---DWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp CCEET-TTTEECCTTS-CE-EECTTTC---CEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CeeEE-ECCCcCCCCC-CE-EEcCCCC---CCEecccccccccccCCCCEEECCCCcccC
Confidence 33445 7765543222 22 222 243 99999998432111 1345899998653
No 134
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=20.50 E-value=2.9e+02 Score=31.53 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=18.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhcccchhhhhhhhhHHH
Q 010537 343 DMPVLIMVSMLAYFCFLEQLLVSDLGARALAISLPFSCV 381 (508)
Q Consensus 343 d~p~LViismLayFcFLeqLLv~~lg~~AlaislPFs~v 381 (508)
+....+++++++-|++|..++-+-.....+.+++|++++
T Consensus 871 ~~~~~~~~a~~~i~l~l~~~f~s~~~~l~il~~ip~~~~ 909 (1052)
T 2v50_A 871 QAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVI 909 (1052)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCSSTTHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 333334444444444433333333333455667788755
Done!