BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010538
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 110/274 (40%), Gaps = 55/274 (20%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSD-ISLATCDIVRAAREQVLDYFNA 99
+YLD++ T E + + T + +GNP S+S + V AR Q+ D A
Sbjct: 5 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 64
Query: 100 SMKDYKCIFTSGATAA--LKLVGEAFPWSHQSSYMYTMEN-HNSVLGIREYALSQGAAAF 156
++ +FTSGAT + L + G A + + ++ T + H +VL
Sbjct: 65 DPRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVL-------------- 108
Query: 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS 216
D ++ +G + + P+R+ D L A
Sbjct: 109 --DTCRQLEREGFEVTYLA-----------------PQRNGIIDLKELEA--------AM 141
Query: 217 RFNLDLINIMKKNPE-----RILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPVDFVV 270
R + L++IM N E I I + R ++ +DA + P DLS+ VD +
Sbjct: 142 RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 201
Query: 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
S +KI+G P G+GAL +R ++ GG
Sbjct: 202 FSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGG 234
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 110/274 (40%), Gaps = 55/274 (20%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSD-ISLATCDIVRAAREQVLDYFNA 99
+YLD++ T E + + T + +GNP S+S + V AR Q+ D A
Sbjct: 24 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 83
Query: 100 SMKDYKCIFTSGATAA--LKLVGEAFPWSHQSSYMYTMEN-HNSVLGIREYALSQGAAAF 156
++ +FTSGAT + L + G A + + ++ T + H +VL
Sbjct: 84 DPRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVL-------------- 127
Query: 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS 216
D ++ +G + + P+R+ D L A
Sbjct: 128 --DTCRQLEREGFEVTYLA-----------------PQRNGIIDLKELEA--------AM 160
Query: 217 RFNLDLINIMKKNPE-----RILEISPFSKGRWMVL-IDAAKGCVTQPPDLSKYPVDFVV 270
R + L++IM N E I I + R ++ +DA + P DLS+ VD +
Sbjct: 161 RDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMS 220
Query: 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
S +KI+G P G+GAL +R ++ GG
Sbjct: 221 FSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGG 253
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 158/406 (38%), Gaps = 76/406 (18%)
Query: 42 VYLDHAGATLYSELQMEAI---FRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN 98
VYLD+A + +E + + + NV+ H +S+ D A R +V + N
Sbjct: 30 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQ---LSVRATDAYEAVRNKVAKFIN 86
Query: 99 ASMKDYKCIFTSGATAALKLVGEAFPWSHQS------SYMYTMENHNSVLGIREYALSQG 152
A + ++T AT A+ LV A+ W + ME+H++++ + A G
Sbjct: 87 AR-SPREIVYTRNATEAINLV--AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG 143
Query: 153 AAA--FAIDVEEAVDNDGLSESLVTSTK-ISLLPIQRRKGASFPERDPAGDAYNLFAFPS 209
A +D +E+ D + L TK ++++ I G P + A A+
Sbjct: 144 AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ------ 197
Query: 210 ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFV 269
+G++ VL+DA + P D+ D++
Sbjct: 198 ----AGAK----------------------------VLVDACQSAPHYPLDVQLIDCDWL 225
Query: 270 VMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG-VEELFED 328
V S +K+ PTG+G L + + + + +F GG + IA++ F G + FE
Sbjct: 226 VASGHKMCA-PTGIGFLYGKEEILEAMP-PFFGGGEM---IAEVFFDHFTTGELPHKFEA 280
Query: 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYT 388
GT + ++ + + L + I + L Y+ + L + +YG
Sbjct: 281 GTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQ------LRLYG--- 331
Query: 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFC 434
+ D ++ SFN+ S +V + GI +R+G C
Sbjct: 332 PNPKHGDRAALASFNVAGLHAS-----DVATMVDQDGIAIRSGHHC 372
>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|B Chain B, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4HVK|A Chain A, Crystal Structure And Functional Studies Of An Unusual
L-Cysteine Desulfurase From Archaeoglobus Fulgidus
Length = 382
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 59/272 (21%)
Query: 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMK 102
Y D+ A E +EA+ + T +GNP S + V+ ARE+V N
Sbjct: 3 YFDYTSAKPVDERILEAML-PYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-- 59
Query: 103 DYKCIFTSGATAA--LKLVGEAFPWSHQSSY-MYTMENHNSVLGIREYALSQGAAAFAID 159
+FTSGAT A L ++G A + + + + + H SV+ ++ QG
Sbjct: 60 GGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG------- 112
Query: 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN 219
++ +P+ + + E D +F +
Sbjct: 113 -----------------FEVEYIPVGK-----YGEVD--------------VSFIDQKLR 136
Query: 220 LD--LINIMKKNPE-----RILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272
D L+++ N E + EIS G+ + IDA D+ K D + +S
Sbjct: 137 DDTILVSVQHANNEIGTIQPVEEISEVLAGKAALHIDATASVGQIEVDVEKIGADMLTIS 196
Query: 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGG 304
I+G P G+GAL +R +A L+ GG
Sbjct: 197 SNDIYG-PKGVGALWIRKEAK--LQPVILGGG 225
>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase
pdb|3GZC|B Chain B, Structure Of Human Selenocysteine Lyase
pdb|3GZD|C Chain C, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 56/272 (20%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
VY+D+ T ++A+ + +GNP S DI+ AARE +
Sbjct: 27 VYMDYNATTPLEPEVIQAMTKAMW-EAWGNPSSPYSAGRKAKDIINAARESLAKMIGGKP 85
Query: 102 KDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158
+D IFTSG T + LV + ++Q+S +T +H+ V G + + ++
Sbjct: 86 QD--IIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFIT-------- 135
Query: 159 DVEEAVDNDGLS---ESLVTS--TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNF 213
+V++D + E LV ++ +P+ + G + + ++ A
Sbjct: 136 ---SSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQT--------EVDDILA------- 177
Query: 214 SGSRFNLDLINIMKKN---------PERILEISPFSKGR-------WMVLIDAAKGCVTQ 257
R L+ IM N PE I ++ R +V DAA+ Q
Sbjct: 178 -AVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQ 236
Query: 258 PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMR 289
D+ VDF+ + +K +G +GAL +R
Sbjct: 237 RVDVEDLGVDFLTIVGHKFYG--PRIGALYIR 266
>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|B Chain B, Human Selenocysteine Lyase, P1 Crystal Form
pdb|3GZD|D Chain D, Human Selenocysteine Lyase, P1 Crystal Form
Length = 440
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 56/272 (20%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
VY+D+ T ++A+ + +GNP S DI+ AARE +
Sbjct: 27 VYMDYNATTPLEPEVIQAMTKAMW-EAWGNPSSPYSAGRKAKDIINAARESLAKMIGGKP 85
Query: 102 KDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158
+D IFTSG T + LV + ++Q+S +T +H+ V G + + ++
Sbjct: 86 QD--IIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFIT-------- 135
Query: 159 DVEEAVDNDGLS---ESLVTS--TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNF 213
+V++D + E LV ++ +P+ + G + + ++ A
Sbjct: 136 ---SSVEHDSIRLPLEHLVEEQVAAVTFVPVSKVSGQT--------EVDDILA------- 177
Query: 214 SGSRFNLDLINIMKKN---------PERILEISPFSKGR-------WMVLIDAAKGCVTQ 257
R L+ IM N PE I ++ R +V DAA+ Q
Sbjct: 178 -AVRPTTRLVTIMLANNETGIVMPVPEISQRIKALNQERVAAGLPPILVHTDAAQALGKQ 236
Query: 258 PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMR 289
D+ VDF+ + +K +G +GAL +R
Sbjct: 237 RVDVEDLGVDFLTIVGHKFYG--PRIGALYIR 266
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VL+D A+ + P D+ DF V S +K++G PTG+G L ++ + + + GG+
Sbjct: 197 VLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMP-PWEGGGS 254
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
+ A+++ + + FE GT + I + +++L + I + +L Y
Sbjct: 255 MIATVSLSEGTTWTKAPWR-FEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA 313
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
L E+ D+ T+YG + +++FNL G Y +V G
Sbjct: 314 LSQL-----ESVPDL-TLYGP-------QNRLGVIAFNL----GKHHAY-DVGSFLDNYG 355
Query: 426 IQLRTGCFC 434
I +RTG C
Sbjct: 356 IAVRTGHHC 364
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VL+D A+ + P D+ DF V S +K++G PTG+G L ++ + + + GG+
Sbjct: 199 VLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMP-PWEGGGS 256
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
+ A+++ + + FE GT + I + +++L + I + +L Y
Sbjct: 257 MIATVSLSEGTTWTKAPWR-FEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA 315
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
L E+ D+ T+YG + +++FNL G Y +V G
Sbjct: 316 LSQL-----ESVPDL-TLYGP-------QNRLGVIAFNL----GKHHAY-DVGSFLDNYG 357
Query: 426 IQLRTGCFC 434
I +RTG C
Sbjct: 358 IAVRTGHHC 366
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VL+D A+ + P D+ DF V S +K++G PTG+G L ++ + + + GG+
Sbjct: 197 VLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMP-PWEGGGS 254
Query: 306 VAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYV 365
+ A+++ + + FE GT + I + +++L + I + +L Y
Sbjct: 255 MIATVSLSEGTTWTKAPWR-FEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA 313
Query: 366 RKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425
L E+ D+ T+YG +++FNL G+ Y +V G
Sbjct: 314 LSQL-----ESVPDL-TLYGPQARL-------GVIAFNL----GAHHAY-DVGSFLDNYG 355
Query: 426 IQLRTGCFC 434
I +RTG C
Sbjct: 356 IAVRTGHHC 364
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF------SKGRW--MVLIDA 250
GDA + A N G + L +++ + N ++L ++ +G + VL+D
Sbjct: 141 GDAAAVLA-----NHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 195
Query: 251 AKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300
A+ + P D S+ VD+ + +K F P G+G L + D + TY
Sbjct: 196 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTY 245
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 246 VLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGT 305
VL+D A+ + P D+ DF V S +K++G PTG+G L ++ + + + GG+
Sbjct: 197 VLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMP-PWEGGGS 254
Query: 306 VAASIA 311
+ A+++
Sbjct: 255 MIATVS 260
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 46/255 (18%)
Query: 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM 101
VY D+ T + +E + F YGNP+S + + + ARE+V S
Sbjct: 3 VYFDNNATTRVDDRVLEEMIV-FYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 102 KDYKCIFTSGATAA----LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157
+ FTS AT + LK V E F ++ +E H +VL +Y +G
Sbjct: 62 SE--IFFTSCATESINWILKTVAETFEKRKRTIITTPIE-HKAVLETMKYLSMKGF---- 114
Query: 158 IDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN-LFAFPSECNFSGS 216
K+ +P+ R E + D L + + N G+
Sbjct: 115 --------------------KVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGT 154
Query: 217 RFNL-DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275
+ D+ I+KK + L V +DA + P L K VD+ S +K
Sbjct: 155 IQPVEDVTRIVKKKNKETL-----------VHVDAVQTIGKIPFSLEKLEVDYASFSAHK 203
Query: 276 IFGYPTGLGALIMRN 290
G P G+G +R
Sbjct: 204 FHG-PKGVGITYIRK 217
>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9X|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase
pdb|3A9Y|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Y|B Chain B, Crystal Structure Of Rat Selenocysteine Lyase In Complex
With L-Cysteine
pdb|3A9Z|A Chain A, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
pdb|3A9Z|B Chain B, Crystal Structure Of Ras Selenocysteine Lyase In Complex
With Selenopropionate
Length = 432
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 110/300 (36%), Gaps = 75/300 (25%)
Query: 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN 98
N VY+D+ T ++A+ + +GNP S DI+ AR +
Sbjct: 17 NRKVYMDYNATTPLEPEVIQAVT-EAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIG 75
Query: 99 ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAI 158
+D IFTSG T + LV H++V E QG I
Sbjct: 76 GKPQDI--IFTSGGTESNNLV-----------------IHSTVRCFHEQQTLQGRTVDQI 116
Query: 159 DVEEA---------VDNDGLS---ESLVTS--TKISLLPIQRRKGASFPERDPAGDAYNL 204
EE V++D + E LV +++ +P+ + G + ++
Sbjct: 117 SPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQV--------EVEDI 168
Query: 205 FAF--PSECNFSGSRFNLDLINIMKKNPER--ILEISPFSK--------------GRWMV 246
A P+ C L+ IM N E I+ IS S+ R +V
Sbjct: 169 LAAVRPTTC----------LVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLV 218
Query: 247 LIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKL--LKNTYFSGG 304
DAA+ + D+ VDF+ + +K +G +GAL +R KL L F GG
Sbjct: 219 HTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG--PRIGALYVRG-VGKLTPLYPMLFGGG 275
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF------SKGRW--MVLIDA 250
GDA + A N G + L +++ + N ++L ++ +G + VL+D
Sbjct: 137 GDAAAVLA-----NHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 191
Query: 251 AKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY 300
A+ + P D S+ VD+ + + F P G+G L + D + TY
Sbjct: 192 AQSAGSLPLDFSRLEVDYYAFTGHAWFAGPAGVGGLYIHGDCLGEINPTY 241
>pdb|1V0Z|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1V0Z|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
pdb|1W1X|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W1X|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 277 K.
pdb|1W20|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W20|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 3 Hours At 291 K
pdb|1W21|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|1W21|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Sialic Acid (Nana, Neu5ac), Crystal
Soaked For 43 Hours At 291 K.
pdb|2CML|A Chain A, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|B Chain B, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|C Chain C, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K.
pdb|2CML|D Chain D, Structure Of Neuraminidase From English Duck Subtype N6
Complexed With 30 Mm Zanamivir, Crystal Soaked For 3
Hours At 291 K
Length = 389
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 389 SEVSYHDTGSMVSFNLKRPDGS-----WFGYREVEKLASLSGIQLRTG---CFCNPGAC 439
S S HD S +S + P+ + W+G R + ++ S +G LRT C C+ G C
Sbjct: 99 SSTSCHDGMSRMSICMSGPNNNASAVVWYGGRPITEIPSWAGNILRTQESECVCHKGVC 157
>pdb|3H25|A Chain A, Crystal Structure Of The Catalytic Domain Of Primase Repb'
In Complex With Initiator Dna
Length = 226
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 134 TMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193
+M+N ++ I + G F I V +A ++ + + P +R A
Sbjct: 14 SMKNDRTLQAIGRQLKAMGCERFDIGVRDATTGQMMNREWSAAEVLQNTPWLKRMNAQ-- 71
Query: 194 ERDPAGDAYNLFAFPSECNFSG-------SRFNLDLINIMKKNPERILEISPFSKGRWMV 246
+++ P+E G S F+LD + + P ++E SP + W+
Sbjct: 72 -------GNDVYIRPAEQERHGLVLVDDLSEFDLDDMKAEGREPALVVETSPKNYQAWVK 124
Query: 247 LIDAAKG 253
+ DAA G
Sbjct: 125 VADAAGG 131
>pdb|3H20|A Chain A, Crystal Structure Of Primase Repb'
Length = 323
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 16/126 (12%)
Query: 135 MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194
M+N ++ I + G F I V +A ++ + + P +R A
Sbjct: 1 MKNDRTLQAIGRQLKAMGCERFDIGVRDATTGQMMNREWSAAEVLQNTPWLKRMNAQ--- 57
Query: 195 RDPAGDAYNLFAFPSECNFSG-------SRFNLDLINIMKKNPERILEISPFSKGRWMVL 247
+++ P+E G S F+LD + + P ++E SP + W+ +
Sbjct: 58 ------GNDVYIRPAEQERHGLVLVDDLSEFDLDDMKAEGREPALVVETSPKNYQAWVKV 111
Query: 248 IDAAKG 253
DAA G
Sbjct: 112 ADAAGG 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,471,772
Number of Sequences: 62578
Number of extensions: 649802
Number of successful extensions: 1341
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 24
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)