Query 010538
Match_columns 508
No_of_seqs 171 out of 2288
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 08:57:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hvk_A Probable cysteine desul 100.0 4.4E-41 1.5E-45 344.3 34.1 372 41-504 1-375 (382)
2 1kmj_A Selenocysteine lyase; p 100.0 4.4E-40 1.5E-44 340.3 36.8 392 25-503 4-406 (406)
3 3cai_A Possible aminotransfera 100.0 1.7E-40 5.8E-45 344.4 33.5 375 25-498 12-405 (406)
4 3e77_A Phosphoserine aminotran 100.0 1.4E-40 4.6E-45 341.7 26.6 355 41-501 13-374 (377)
5 4eb5_A Probable cysteine desul 100.0 1E-39 3.5E-44 335.1 32.9 372 41-504 1-375 (382)
6 3qm2_A Phosphoserine aminotran 100.0 6.3E-41 2.1E-45 345.9 23.1 347 41-500 27-383 (386)
7 1elu_A L-cysteine/L-cystine C- 100.0 4E-38 1.4E-42 324.1 40.4 378 25-498 3-388 (390)
8 1t3i_A Probable cysteine desul 100.0 1.3E-38 4.5E-43 330.9 36.5 393 25-503 9-414 (420)
9 3vax_A Putative uncharacterize 100.0 2.3E-39 7.7E-44 335.0 26.8 375 34-500 14-398 (400)
10 1eg5_A Aminotransferase; PLP-d 100.0 4.8E-38 1.6E-42 322.5 35.3 370 42-503 3-377 (384)
11 3e9k_A Kynureninase; kynurenin 100.0 7.8E-40 2.7E-44 346.6 22.3 392 25-502 38-461 (465)
12 3lvm_A Cysteine desulfurase; s 100.0 4.7E-38 1.6E-42 327.8 35.0 375 39-504 21-401 (423)
13 3m5u_A Phosphoserine aminotran 100.0 8.4E-38 2.9E-42 319.7 31.6 346 41-501 5-359 (361)
14 2z9v_A Aspartate aminotransfer 100.0 1.9E-37 6.5E-42 319.7 29.7 368 33-503 2-372 (392)
15 3a9z_A Selenocysteine lyase; P 100.0 1.3E-36 4.3E-41 318.3 32.9 388 29-502 8-428 (432)
16 2dr1_A PH1308 protein, 386AA l 100.0 2.2E-36 7.5E-41 310.6 32.6 370 26-502 7-379 (386)
17 1iug_A Putative aspartate amin 100.0 1.3E-35 4.4E-40 301.1 32.2 343 43-501 3-347 (352)
18 2huf_A Alanine glyoxylate amin 100.0 8.7E-36 3E-40 307.4 29.4 371 29-503 8-384 (393)
19 1qz9_A Kynureninase; kynurenin 100.0 6.9E-36 2.4E-40 310.7 28.8 374 25-502 15-402 (416)
20 3ffr_A Phosphoserine aminotran 100.0 1.3E-34 4.5E-39 294.5 35.8 355 42-499 5-361 (362)
21 1vjo_A Alanine--glyoxylate ami 100.0 8.4E-35 2.9E-39 300.2 27.3 368 25-499 19-392 (393)
22 3zrp_A Serine-pyruvate aminotr 100.0 1E-34 3.5E-39 297.7 27.2 355 44-503 5-364 (384)
23 2yrr_A Aminotransferase, class 100.0 1.1E-34 3.9E-39 293.7 25.3 347 43-501 2-352 (353)
24 3nnk_A Ureidoglycine-glyoxylat 100.0 3.3E-34 1.1E-38 297.1 28.9 370 33-502 5-390 (411)
25 2c0r_A PSAT, phosphoserine ami 100.0 2.5E-33 8.4E-38 286.4 31.0 348 39-500 2-359 (362)
26 2ch1_A 3-hydroxykynurenine tra 100.0 1.4E-33 4.8E-38 291.2 29.4 368 33-502 10-383 (396)
27 3isl_A Purine catabolism prote 100.0 1.2E-33 4E-38 293.4 28.7 330 82-502 42-390 (416)
28 3f0h_A Aminotransferase; RER07 100.0 5.7E-33 2E-37 284.6 30.8 352 41-500 19-372 (376)
29 3kgw_A Alanine-glyoxylate amin 100.0 3.3E-33 1.1E-37 287.4 28.7 371 29-503 15-389 (393)
30 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 1.9E-33 6.6E-38 287.3 21.8 352 39-500 7-368 (371)
31 1w23_A Phosphoserine aminotran 100.0 3.8E-32 1.3E-36 276.8 28.3 344 41-500 3-358 (360)
32 2bkw_A Alanine-glyoxylate amin 100.0 9.2E-32 3.1E-36 276.0 28.7 355 42-501 6-383 (385)
33 1m32_A 2-aminoethylphosphonate 100.0 1E-31 3.5E-36 273.3 28.1 355 41-500 5-363 (366)
34 3f9t_A TDC, L-tyrosine decarbo 100.0 4.1E-31 1.4E-35 271.6 31.3 334 41-500 32-396 (397)
35 2z67_A O-phosphoseryl-tRNA(SEC 100.0 6E-33 2E-37 293.4 17.0 367 24-499 66-455 (456)
36 2dgk_A GAD-beta, GADB, glutama 100.0 1.3E-30 4.4E-35 275.0 33.7 352 50-504 52-436 (452)
37 3ke3_A Putative serine-pyruvat 100.0 2.7E-32 9.2E-37 281.2 20.1 342 69-502 21-376 (379)
38 3hbx_A GAD 1, glutamate decarb 100.0 3.6E-30 1.2E-34 275.3 34.2 356 42-504 58-446 (502)
39 3ffh_A Histidinol-phosphate am 100.0 1.1E-29 3.6E-34 259.4 33.9 333 25-498 21-362 (363)
40 3get_A Histidinol-phosphate am 100.0 3.4E-30 1.2E-34 263.2 29.9 343 10-499 8-364 (365)
41 1wyu_A Glycine dehydrogenase ( 100.0 1.3E-30 4.4E-35 273.9 27.0 370 24-499 45-437 (438)
42 2jis_A Cysteine sulfinic acid 100.0 1.2E-30 4E-35 279.9 25.5 364 40-500 108-513 (515)
43 2fyf_A PSAT, phosphoserine ami 100.0 1.6E-29 5.5E-34 261.8 31.4 343 39-500 38-396 (398)
44 2bwn_A 5-aminolevulinate synth 100.0 6.8E-31 2.3E-35 272.0 20.5 369 7-501 11-399 (401)
45 3ly1_A Putative histidinol-pho 100.0 2.4E-29 8.2E-34 255.7 30.4 325 39-501 16-351 (354)
46 2qma_A Diaminobutyrate-pyruvat 100.0 5E-30 1.7E-34 273.8 26.0 367 39-501 99-495 (497)
47 3p1t_A Putative histidinol-pho 100.0 4.2E-29 1.4E-33 251.9 31.4 315 39-500 16-335 (337)
48 3euc_A Histidinol-phosphate am 100.0 2.4E-29 8.1E-34 257.1 29.1 326 39-500 30-366 (367)
49 3dzz_A Putative pyridoxal 5'-p 100.0 2.1E-29 7E-34 259.3 27.4 345 39-502 27-389 (391)
50 1rv3_A Serine hydroxymethyltra 100.0 8.9E-31 3.1E-35 278.7 17.3 363 39-501 44-430 (483)
51 3tqx_A 2-amino-3-ketobutyrate 100.0 2E-29 6.8E-34 260.1 26.4 344 40-503 42-397 (399)
52 3mc6_A Sphingosine-1-phosphate 100.0 3.5E-29 1.2E-33 267.1 28.3 348 40-503 61-438 (497)
53 1v2d_A Glutamine aminotransfer 100.0 6E-29 2.1E-33 255.6 28.8 333 39-503 25-372 (381)
54 1fc4_A 2-amino-3-ketobutyrate 100.0 4.8E-29 1.6E-33 257.9 28.2 342 39-502 43-397 (401)
55 3a2b_A Serine palmitoyltransfe 100.0 3.9E-29 1.3E-33 258.5 26.9 326 52-501 58-391 (398)
56 4dq6_A Putative pyridoxal phos 100.0 4.6E-29 1.6E-33 256.6 27.2 351 25-499 21-390 (391)
57 2w8t_A SPT, serine palmitoyltr 100.0 2.6E-28 8.9E-33 255.4 32.3 339 41-502 64-415 (427)
58 3kax_A Aminotransferase, class 100.0 4E-29 1.4E-33 256.3 24.7 341 39-499 24-382 (383)
59 3g0t_A Putative aminotransfera 100.0 6.2E-29 2.1E-33 260.0 26.6 356 39-500 44-435 (437)
60 1bs0_A Protein (8-amino-7-oxon 100.0 6E-29 2.1E-33 255.7 25.9 337 39-498 37-383 (384)
61 1gd9_A Aspartate aminotransfer 100.0 2.1E-28 7.1E-33 252.1 29.1 346 26-501 15-385 (389)
62 2z61_A Probable aspartate amin 100.0 7.6E-29 2.6E-33 253.8 23.9 324 39-500 29-369 (370)
63 3dyd_A Tyrosine aminotransfera 100.0 1.9E-28 6.4E-33 256.5 27.2 340 39-502 54-424 (427)
64 1svv_A Threonine aldolase; str 100.0 2.6E-29 9E-34 255.0 20.0 333 39-501 13-357 (359)
65 3mad_A Sphingosine-1-phosphate 100.0 2.4E-28 8E-33 261.9 28.1 307 81-503 136-470 (514)
66 2okj_A Glutamate decarboxylase 100.0 8.2E-29 2.8E-33 264.9 24.4 368 40-501 92-501 (504)
67 1b5p_A Protein (aspartate amin 100.0 6.9E-28 2.4E-32 248.4 29.7 338 39-500 31-383 (385)
68 1u08_A Hypothetical aminotrans 100.0 3.2E-28 1.1E-32 250.6 26.8 342 39-498 30-386 (386)
69 3hdo_A Histidinol-phosphate am 100.0 9.8E-28 3.4E-32 244.8 29.9 319 39-500 26-353 (360)
70 1fg7_A Histidinol phosphate am 100.0 6.1E-28 2.1E-32 246.4 28.0 287 86-498 60-354 (356)
71 3ftb_A Histidinol-phosphate am 100.0 3.9E-28 1.3E-32 247.2 25.6 323 39-500 26-359 (361)
72 1lc5_A COBD, L-threonine-O-3-p 100.0 1.5E-27 5E-32 243.9 29.6 338 25-502 11-360 (364)
73 3h14_A Aminotransferase, class 100.0 1.1E-27 3.6E-32 247.2 28.5 340 39-504 31-384 (391)
74 2o0r_A RV0858C (N-succinyldiam 100.0 2.4E-28 8.2E-33 254.0 23.5 352 39-502 25-396 (411)
75 3vp6_A Glutamate decarboxylase 100.0 3.8E-28 1.3E-32 260.1 25.5 369 39-500 94-503 (511)
76 1v72_A Aldolase; PLP-dependent 100.0 8.7E-28 3E-32 243.7 26.3 336 39-502 7-353 (356)
77 2gb3_A Aspartate aminotransfer 100.0 4.5E-28 1.5E-32 251.9 23.6 338 39-502 43-402 (409)
78 2vi8_A Serine hydroxymethyltra 100.0 8.4E-29 2.9E-33 256.1 17.8 350 43-503 26-388 (405)
79 1c7n_A Cystalysin; transferase 100.0 1E-27 3.4E-32 247.8 25.8 359 25-506 18-397 (399)
80 2x5d_A Probable aminotransfera 100.0 1.5E-27 5.2E-32 248.0 27.2 345 39-504 37-400 (412)
81 1xi9_A Putative transaminase; 100.0 5.6E-28 1.9E-32 250.7 23.8 337 39-501 38-402 (406)
82 1o4s_A Aspartate aminotransfer 100.0 8.5E-28 2.9E-32 248.1 24.6 325 39-500 41-387 (389)
83 3k40_A Aromatic-L-amino-acid d 100.0 6.1E-28 2.1E-32 256.3 23.6 362 40-501 73-470 (475)
84 2fnu_A Aminotransferase; prote 100.0 6.1E-27 2.1E-31 239.4 30.0 355 49-502 8-372 (375)
85 1js3_A DDC;, DOPA decarboxylas 100.0 9.1E-28 3.1E-32 255.5 24.5 365 40-502 73-474 (486)
86 3nra_A Aspartate aminotransfer 100.0 2.4E-28 8.3E-33 252.8 19.2 340 40-502 40-405 (407)
87 3ele_A Amino transferase; RER0 100.0 3.7E-28 1.3E-32 251.0 20.4 340 39-502 35-396 (398)
88 1bw0_A TAT, protein (tyrosine 100.0 8.7E-28 3E-32 249.9 22.8 344 39-502 33-413 (416)
89 1j32_A Aspartate aminotransfer 100.0 1.7E-27 5.8E-32 245.2 24.7 337 39-501 30-386 (388)
90 2zyj_A Alpha-aminodipate amino 100.0 2.6E-28 8.9E-33 252.4 18.3 345 39-501 32-392 (397)
91 3e2y_A Kynurenine-oxoglutarate 100.0 2.9E-27 1E-31 245.1 26.1 351 39-498 23-409 (410)
92 3asa_A LL-diaminopimelate amin 100.0 4.8E-27 1.6E-31 243.4 27.7 333 39-500 33-391 (400)
93 1d2f_A MALY protein; aminotran 100.0 5E-27 1.7E-31 242.0 27.0 352 25-501 17-388 (390)
94 4e1o_A HDC, histidine decarbox 100.0 1.3E-27 4.4E-32 254.2 23.1 362 40-501 78-477 (481)
95 3l8a_A METC, putative aminotra 100.0 3E-27 1E-31 246.7 25.4 341 39-500 61-420 (421)
96 2o1b_A Aminotransferase, class 100.0 2.4E-27 8.3E-32 246.2 24.4 335 39-500 47-401 (404)
97 3fdb_A Beta C-S lyase, putativ 100.0 3.5E-27 1.2E-31 241.5 25.1 332 39-500 23-374 (377)
98 3ei9_A LL-diaminopimelate amin 100.0 2E-27 6.9E-32 248.6 23.4 335 39-498 56-424 (432)
99 1pff_A Methionine gamma-lyase; 100.0 2.3E-27 8E-32 239.0 22.6 312 88-498 2-330 (331)
100 2dkj_A Serine hydroxymethyltra 100.0 3.5E-28 1.2E-32 251.6 17.0 363 26-501 12-387 (407)
101 2dou_A Probable N-succinyldiam 100.0 3.9E-27 1.3E-31 241.7 24.5 335 39-499 25-375 (376)
102 3fkd_A L-threonine-O-3-phospha 100.0 1.3E-26 4.3E-31 235.5 28.0 316 39-500 15-340 (350)
103 1yiz_A Kynurenine aminotransfe 100.0 1.2E-26 4.1E-31 242.4 27.9 360 39-500 37-427 (429)
104 3cq5_A Histidinol-phosphate am 100.0 2.1E-26 7.3E-31 235.8 29.0 321 40-500 31-366 (369)
105 3qgu_A LL-diaminopimelate amin 100.0 2.5E-27 8.5E-32 249.1 22.2 343 39-501 69-439 (449)
106 1wyu_B Glycine dehydrogenase s 100.0 8.2E-27 2.8E-31 247.5 26.3 358 39-500 66-439 (474)
107 3fvs_A Kynurenine--oxoglutarat 100.0 3.9E-27 1.3E-31 245.2 23.4 356 39-500 28-420 (422)
108 1gc0_A Methionine gamma-lyase; 100.0 8.3E-27 2.8E-31 241.8 25.7 350 40-498 27-397 (398)
109 2cb1_A O-acetyl homoserine sul 100.0 2E-26 6.9E-31 240.0 27.0 329 83-497 55-411 (412)
110 3jtx_A Aminotransferase; NP_28 100.0 6.6E-27 2.2E-31 241.3 23.1 341 39-499 30-395 (396)
111 3aow_A Putative uncharacterize 99.9 1.8E-26 6.1E-31 243.2 25.8 308 86-501 120-444 (448)
112 3b46_A Aminotransferase BNA3; 99.9 1.4E-26 4.9E-31 243.7 24.9 360 39-500 57-445 (447)
113 1vp4_A Aminotransferase, putat 99.9 6.4E-27 2.2E-31 244.5 21.9 310 87-502 88-418 (425)
114 2rfv_A Methionine gamma-lyase; 99.9 4.4E-27 1.5E-31 243.7 20.3 350 40-498 26-396 (398)
115 1uu1_A Histidinol-phosphate am 99.9 5E-26 1.7E-30 230.0 27.6 307 39-498 19-334 (335)
116 3ezs_A Aminotransferase ASPB; 99.9 3.9E-26 1.3E-30 233.8 25.8 344 25-500 8-373 (376)
117 2x3l_A ORN/Lys/Arg decarboxyla 99.9 6.5E-27 2.2E-31 246.4 19.5 285 84-502 57-353 (446)
118 2zc0_A Alanine glyoxylate tran 99.9 4.1E-26 1.4E-30 236.4 24.9 345 40-501 35-403 (407)
119 2fq6_A Cystathionine beta-lyas 99.9 4.5E-26 1.5E-30 237.6 25.0 315 83-498 81-414 (415)
120 3kki_A CAI-1 autoinducer synth 99.9 5.6E-26 1.9E-30 235.9 25.7 321 52-501 74-403 (409)
121 3piu_A 1-aminocyclopropane-1-c 99.9 3E-27 1E-31 247.6 16.1 371 26-502 23-432 (435)
122 1jg8_A L-ALLO-threonine aldola 99.9 9.7E-27 3.3E-31 235.7 18.2 334 39-500 3-344 (347)
123 1qgn_A Protein (cystathionine 99.9 3.6E-26 1.2E-30 240.1 23.0 319 78-500 108-443 (445)
124 3op7_A Aminotransferase class 99.9 2.2E-25 7.7E-30 228.3 28.2 298 86-503 65-372 (375)
125 3if2_A Aminotransferase; YP_26 99.9 3.5E-26 1.2E-30 239.9 22.5 362 39-502 31-440 (444)
126 2a7v_A Serine hydroxymethyltra 99.9 5.9E-26 2E-30 240.7 23.7 344 47-501 61-440 (490)
127 3n0l_A Serine hydroxymethyltra 99.9 2.8E-26 9.5E-31 238.1 20.9 349 39-501 25-388 (417)
128 1iay_A ACC synthase 2, 1-amino 99.9 1.7E-26 5.7E-31 241.3 19.0 305 86-500 85-425 (428)
129 3uwc_A Nucleotide-sugar aminot 99.9 1.1E-25 3.8E-30 230.3 24.7 323 84-501 38-370 (374)
130 3frk_A QDTB; aminotransferase, 99.9 1.3E-25 4.5E-30 230.1 24.9 320 84-499 36-365 (373)
131 2r2n_A Kynurenine/alpha-aminoa 99.9 2.7E-25 9.1E-30 232.3 27.6 312 84-501 82-423 (425)
132 1n8p_A Cystathionine gamma-lya 99.9 2.3E-26 8E-31 238.2 18.9 311 82-498 53-391 (393)
133 3tcm_A Alanine aminotransferas 99.9 2E-25 7E-30 238.3 26.7 344 52-501 107-493 (500)
134 2eh6_A Acoat, acetylornithine 99.9 2.9E-25 9.9E-30 227.3 26.8 318 39-498 26-374 (375)
135 1cs1_A CGS, protein (cystathio 99.9 2.4E-25 8.1E-30 229.6 25.4 312 83-499 51-384 (386)
136 1mdo_A ARNB aminotransferase; 99.9 9.8E-25 3.3E-29 224.8 27.0 357 51-500 17-384 (393)
137 3ez1_A Aminotransferase MOCR f 99.9 1.1E-24 3.9E-29 226.9 27.6 310 86-503 72-416 (423)
138 3ppl_A Aspartate aminotransfer 99.9 5E-25 1.7E-29 230.2 24.8 309 86-502 80-420 (427)
139 3dr4_A Putative perosamine syn 99.9 1.4E-24 5E-29 223.8 27.8 358 39-499 22-390 (391)
140 3cog_A Cystathionine gamma-lya 99.9 3.2E-25 1.1E-29 230.5 22.8 311 85-500 68-400 (403)
141 1vef_A Acetylornithine/acetyl- 99.9 6.5E-25 2.2E-29 226.6 24.7 330 39-499 43-394 (395)
142 2c81_A Glutamine-2-deoxy-scyll 99.9 2.9E-24 9.8E-29 223.8 29.4 375 50-501 12-413 (418)
143 1b9h_A AHBA synthase, protein 99.9 1.2E-24 4.1E-29 224.0 25.6 354 52-500 15-386 (388)
144 2x5f_A Aspartate_tyrosine_phen 99.9 1.6E-25 5.4E-30 234.1 18.2 303 86-502 90-429 (430)
145 1c4k_A Protein (ornithine deca 99.9 7.9E-25 2.7E-29 241.9 24.7 324 84-502 173-566 (730)
146 3gbx_A Serine hydroxymethyltra 99.9 2.5E-25 8.6E-30 230.9 19.3 342 47-501 37-395 (420)
147 1s0a_A Adenosylmethionine-8-am 99.9 7E-24 2.4E-28 221.6 30.2 351 39-506 41-428 (429)
148 3bwn_A AT1G70560, L-tryptophan 99.9 2.5E-25 8.6E-30 230.2 18.9 285 87-500 71-385 (391)
149 3d6k_A Putative aminotransfera 99.9 2.3E-24 7.7E-29 225.0 26.0 307 86-502 78-418 (422)
150 3ruy_A Ornithine aminotransfer 99.9 5.5E-24 1.9E-28 219.4 28.4 323 39-499 34-391 (392)
151 3g7q_A Valine-pyruvate aminotr 99.9 1.5E-24 5.2E-29 225.1 23.7 308 86-502 77-413 (417)
152 3b8x_A WBDK, pyridoxamine 5-ph 99.9 3E-23 1E-27 214.0 32.9 355 49-496 10-390 (390)
153 3ecd_A Serine hydroxymethyltra 99.9 7.1E-25 2.4E-29 227.9 20.0 348 41-502 34-397 (425)
154 3acz_A Methionine gamma-lyase; 99.9 1.1E-23 3.9E-28 217.6 28.3 308 83-497 58-388 (389)
155 3qhx_A Cystathionine gamma-syn 99.9 3.1E-24 1.1E-28 222.2 23.9 318 76-495 58-391 (392)
156 2oga_A Transaminase; PLP-depen 99.9 8E-24 2.7E-28 219.1 26.1 358 42-502 31-396 (399)
157 1o69_A Aminotransferase; struc 99.9 4.5E-24 1.5E-28 220.7 23.9 334 84-501 32-386 (394)
158 3ihj_A Alanine aminotransferas 99.9 1.9E-24 6.4E-29 230.8 20.9 312 84-501 133-492 (498)
159 1e5e_A MGL, methionine gamma-l 99.9 1.3E-22 4.3E-27 210.9 33.9 314 83-502 61-395 (404)
160 2vyc_A Biodegradative arginine 99.9 5.9E-24 2E-28 236.7 23.9 321 83-501 204-604 (755)
161 3rq1_A Aminotransferase class 99.9 5.5E-24 1.9E-28 221.4 21.8 299 87-503 83-416 (418)
162 3f6t_A Aspartate aminotransfer 99.9 1.1E-24 3.7E-29 234.5 16.6 365 41-502 105-525 (533)
163 2aeu_A Hypothetical protein MJ 99.9 4.5E-24 1.5E-28 219.5 20.5 341 25-503 14-372 (374)
164 2ctz_A O-acetyl-L-homoserine s 99.9 1E-23 3.5E-28 220.3 22.5 334 83-495 57-420 (421)
165 3h7f_A Serine hydroxymethyltra 99.9 9.7E-24 3.3E-28 222.1 22.0 353 40-501 46-413 (447)
166 2ord_A Acoat, acetylornithine 99.9 2.6E-23 9.1E-28 214.7 24.7 327 39-500 38-395 (397)
167 3nyt_A Aminotransferase WBPE; 99.9 8.5E-24 2.9E-28 216.4 19.5 319 84-498 35-360 (367)
168 7aat_A Aspartate aminotransfer 99.9 3.7E-24 1.3E-28 221.3 16.5 332 42-499 37-400 (401)
169 2po3_A 4-dehydrase; external a 99.9 5E-22 1.7E-26 207.3 31.8 327 84-503 52-387 (424)
170 1ibj_A CBL, cystathionine beta 99.9 7.7E-24 2.6E-28 223.8 17.9 316 84-500 133-460 (464)
171 3t18_A Aminotransferase class 99.9 2.4E-23 8.1E-28 216.2 20.6 277 105-496 103-408 (413)
172 3ndn_A O-succinylhomoserine su 99.9 8.4E-23 2.9E-27 212.9 24.6 316 82-495 79-413 (414)
173 1ax4_A Tryptophanase; tryptoph 99.9 5.5E-24 1.9E-28 224.6 15.1 367 39-504 41-443 (467)
174 1sff_A 4-aminobutyrate aminotr 99.9 3.4E-22 1.2E-26 208.1 27.9 350 39-502 39-424 (426)
175 2ay1_A Aroat, aromatic amino a 99.9 2.7E-24 9.1E-29 221.7 11.2 334 39-498 26-392 (394)
176 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 4E-22 1.4E-26 209.0 27.2 363 49-500 38-434 (437)
177 2q7w_A Aspartate aminotransfer 99.9 4.2E-24 1.4E-28 220.3 11.4 323 49-498 42-395 (396)
178 1ajs_A Aspartate aminotransfer 99.9 1.6E-23 5.4E-28 217.4 15.6 340 39-503 30-412 (412)
179 3b1d_A Betac-S lyase; HET: PLP 99.8 1.3E-25 4.6E-30 231.7 0.0 338 40-500 32-391 (392)
180 3pj0_A LMO0305 protein; struct 99.9 8.1E-24 2.8E-28 215.2 12.6 296 84-498 48-358 (359)
181 3fsl_A Aromatic-amino-acid ami 99.9 3.1E-23 1.1E-27 213.8 16.7 329 45-498 38-396 (397)
182 4adb_A Succinylornithine trans 99.9 1.4E-21 4.8E-26 202.0 28.8 331 39-503 37-401 (406)
183 1yaa_A Aspartate aminotransfer 99.9 9.6E-24 3.3E-28 219.1 12.3 329 43-502 39-411 (412)
184 4f4e_A Aromatic-amino-acid ami 99.9 6E-23 2.1E-27 214.0 17.9 332 43-499 59-419 (420)
185 3ri6_A O-acetylhomoserine sulf 99.9 1.2E-21 4.1E-26 204.9 26.7 335 83-495 81-429 (430)
186 2oqx_A Tryptophanase; lyase, p 99.9 1.6E-23 5.6E-28 221.0 12.5 363 39-503 39-443 (467)
187 3meb_A Aspartate aminotransfer 99.9 1.2E-22 4.1E-27 213.9 18.8 334 42-502 58-444 (448)
188 3nx3_A Acoat, acetylornithine 99.9 4E-21 1.4E-25 198.3 29.8 328 39-500 34-393 (395)
189 3lws_A Aromatic amino acid bet 99.9 1E-22 3.5E-27 207.1 17.2 294 85-499 48-356 (357)
190 2pb2_A Acetylornithine/succiny 99.9 9.3E-21 3.2E-25 197.7 30.9 328 39-501 55-417 (420)
191 2ez2_A Beta-tyrosinase, tyrosi 99.9 9.3E-22 3.2E-26 207.0 23.2 359 39-503 40-432 (456)
192 2zy4_A L-aspartate beta-decarb 99.9 2.3E-21 7.7E-26 209.0 24.1 311 105-501 167-521 (546)
193 1z7d_A Ornithine aminotransfer 99.9 2.8E-20 9.6E-25 194.9 31.5 330 39-501 63-428 (433)
194 2eo5_A 419AA long hypothetical 99.9 4.6E-21 1.6E-25 199.8 25.1 346 39-501 40-417 (419)
195 3ju7_A Putative PLP-dependent 99.9 1.9E-21 6.6E-26 200.1 21.9 324 85-500 37-373 (377)
196 3i4j_A Aminotransferase, class 99.9 7.5E-21 2.6E-25 198.6 26.6 357 39-501 27-427 (430)
197 3jzl_A Putative cystathionine 99.9 7.3E-22 2.5E-26 205.1 18.1 309 28-425 15-339 (409)
198 3a8u_X Omega-amino acid--pyruv 99.9 6.7E-21 2.3E-25 200.2 24.4 361 39-501 48-446 (449)
199 2oat_A Ornithine aminotransfer 99.9 8.6E-20 3E-24 191.5 32.8 328 39-500 74-437 (439)
200 2hox_A ALLIIN lyase 1; cystein 99.9 8E-21 2.7E-25 198.7 23.5 289 86-500 102-423 (427)
201 2cjg_A L-lysine-epsilon aminot 99.9 1.6E-20 5.4E-25 197.7 24.3 350 39-501 52-447 (449)
202 1zod_A DGD, 2,2-dialkylglycine 99.9 2.5E-20 8.7E-25 194.7 25.2 360 39-501 41-431 (433)
203 3dxv_A Alpha-amino-epsilon-cap 99.9 7.7E-20 2.6E-24 191.5 27.6 350 39-502 41-425 (439)
204 3i16_A Aluminum resistance pro 99.9 9.7E-21 3.3E-25 197.5 18.7 293 54-425 46-356 (427)
205 3nmy_A Xometc, cystathionine g 99.9 6E-20 2.1E-24 190.4 24.5 312 82-496 65-397 (400)
206 3hvy_A Cystathionine beta-lyas 99.9 6.9E-21 2.4E-25 198.6 17.2 308 27-424 29-355 (427)
207 3tfu_A Adenosylmethionine-8-am 99.8 1.9E-19 6.6E-24 189.9 26.1 347 39-503 71-454 (457)
208 3n5m_A Adenosylmethionine-8-am 99.8 7E-19 2.4E-23 185.0 29.9 361 39-500 47-450 (452)
209 3gju_A Putative aminotransfera 99.8 9.1E-19 3.1E-23 184.8 30.3 365 39-502 49-456 (460)
210 4eu1_A Mitochondrial aspartate 99.8 1.3E-20 4.4E-25 195.4 15.6 291 86-499 81-408 (409)
211 3n75_A LDC, lysine decarboxyla 99.8 1.2E-19 4E-24 199.3 23.5 323 83-500 194-558 (715)
212 4a6r_A Omega transaminase; tra 99.8 9.7E-19 3.3E-23 184.5 28.4 353 39-502 48-449 (459)
213 3dod_A Adenosylmethionine-8-am 99.8 2E-18 6.9E-23 181.4 30.2 364 39-505 42-446 (448)
214 3l44_A Glutamate-1-semialdehyd 99.8 6.5E-19 2.2E-23 184.1 23.8 353 39-503 53-431 (434)
215 3ou5_A Serine hydroxymethyltra 99.8 7.9E-19 2.7E-23 179.5 23.1 347 41-499 56-438 (490)
216 3ht4_A Aluminum resistance pro 99.8 2.6E-19 9E-24 187.3 18.3 310 29-425 22-345 (431)
217 3hmu_A Aminotransferase, class 99.8 4.4E-18 1.5E-22 180.2 27.9 357 39-501 53-451 (472)
218 3i5t_A Aminotransferase; pyrid 99.8 2.6E-17 8.8E-22 174.5 31.3 359 39-502 52-454 (476)
219 3fq8_A Glutamate-1-semialdehyd 99.8 3.3E-19 1.1E-23 186.0 16.4 330 39-500 50-425 (427)
220 3oks_A 4-aminobutyrate transam 99.8 2.1E-17 7.1E-22 174.0 30.2 355 39-500 59-449 (451)
221 4ffc_A 4-aminobutyrate aminotr 99.8 1.4E-17 4.8E-22 175.4 28.6 356 39-502 62-449 (453)
222 3k7y_A Aspartate aminotransfer 99.8 1.3E-18 4.3E-23 180.7 19.8 347 25-501 15-404 (405)
223 2epj_A Glutamate-1-semialdehyd 99.8 1.5E-18 5.1E-23 181.4 18.6 336 39-502 54-431 (434)
224 4e77_A Glutamate-1-semialdehyd 99.8 1.2E-17 4.2E-22 174.2 23.8 351 39-500 51-427 (429)
225 1ohv_A 4-aminobutyrate aminotr 99.8 3.8E-18 1.3E-22 180.7 19.2 352 39-501 61-470 (472)
226 2cy8_A D-phgat, D-phenylglycin 99.8 4.6E-17 1.6E-21 171.2 25.9 332 39-502 55-435 (453)
227 3k28_A Glutamate-1-semialdehyd 99.8 5E-18 1.7E-22 177.3 17.4 349 39-502 51-427 (429)
228 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 9.3E-18 3.2E-22 174.3 18.3 330 81-501 95-442 (450)
229 2e7u_A Glutamate-1-semialdehyd 99.8 3.3E-17 1.1E-21 170.7 22.4 330 39-498 50-423 (424)
230 4h51_A Aspartate aminotransfer 99.7 3.9E-17 1.3E-21 170.0 16.0 357 25-503 31-418 (420)
231 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 8.3E-16 2.9E-20 157.9 16.7 323 89-501 122-460 (501)
232 2yky_A Beta-transaminase; tran 99.3 1.9E-16 6.5E-21 166.7 0.0 334 39-502 98-460 (465)
233 4ao9_A Beta-phenylalanine amin 99.5 2.1E-12 7.3E-17 135.1 22.7 334 39-503 85-447 (454)
234 4atq_A 4-aminobutyrate transam 99.4 1.3E-10 4.5E-15 121.9 30.2 359 39-500 62-453 (456)
235 4e3q_A Pyruvate transaminase; 99.4 7.2E-11 2.5E-15 124.4 27.0 360 39-502 65-468 (473)
236 4a0g_A Adenosylmethionine-8-am 99.1 4E-09 1.4E-13 118.3 20.5 217 199-502 592-828 (831)
237 3ecs_A Translation initiation 22.7 3.6E+02 0.012 25.8 9.3 70 89-161 107-181 (315)
238 4f6o_A Metacaspase-1; rossmann 22.5 1.3E+02 0.0045 29.4 6.2 54 84-139 75-139 (350)
No 1
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=4.4e-41 Score=344.31 Aligned_cols=372 Identities=21% Similarity=0.233 Sum_probs=300.9
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
+||||+++++++++.+++++.+. +...+.+|...+..+.......+++++++++++|++++ +|++|+|+|+|+.+++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPY-MTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHH-HHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE--EEEEESSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHH-HHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC--eEEEECCchHHHHHHH
Confidence 48999999999999999887654 44567778776666666788899999999999999887 8999999999999999
Q ss_pred hhcCC---CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFPW---SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~~---~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++.. ++|++|+++..+|+++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i----- 135 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV---------------DVSFID--QKL----- 135 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCB---------------CHHHHH--HHC-----
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCc---------------CHHHHH--HHh-----
Confidence 98843 78999999999999998887777788999999999876655 688888 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
++++++|++++++||||.+.|+++|.++|++ +|+ +++|++|+.|..++++...++|++++|+||++
T Consensus 136 -~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 201 (382)
T 4hvk_A 136 -RDDTILVSVQHANNEIGTIQPVEEISEVLAG------------KAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIY 201 (382)
T ss_dssp -CTTEEEEECCSBCTTTCBBCCHHHHHHHHSS------------SSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGT
T ss_pred -ccCceEEEEECCCCCceeeCCHHHHHHHHHH------------cCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhc
Confidence 4678999999999999999999999999998 999 99999999999888887778999999999988
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|+|+++++++. .+.+.+.++.. ..++..++++...++++.++++++.+ +++++.++
T Consensus 202 g-~~g~g~~~~~~~~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~ 260 (382)
T 4hvk_A 202 G-PKGVGALWIRKEA--KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAER 260 (382)
T ss_dssp S-CTTCEEEEEETTC--CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred C-CCceEEEEEcCcc--CcCcccccCCC-----------------cCccccCCcCHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 8 8899999999876 45666555432 45567889999999999999887654 68999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
..++++++.+.|+++ ++++++.+... ..+++++|.+++. +..++.+.|.++||.+++|..|...
T Consensus 261 ~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4hvk_A 261 LRRLRDRIIDNVLKI------EESYLNGHPEK-----RLPNNVNVRFSYI-----EGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECSCSSS-----BCTTEEEEEETTC-----CHHHHHHHHHHTTCBCBCC------
T ss_pred HHHHHHHHHHHHhcC------CCeEEeCCccc-----cCCCEEEEEECCC-----CHHHHHHHHHHCCEEEeeCCccCCC
Confidence 999999999999987 47888876542 2356888988653 3346889999999999999888765
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.. .+++.+..+|.. ....++++|++++.++|.+|++++++.|+++++.+..
T Consensus 325 ~~------~~~~~~~~~g~~----------~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~ 375 (382)
T 4hvk_A 325 TL------QPSHVLMACGLK----------HEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp --------CCCHHHHHTTCC----------HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------cchHHHHHcCCC----------hhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 32 234444444421 0011578999999999999999999999998876554
No 2
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=4.4e-40 Score=340.29 Aligned_cols=392 Identities=21% Similarity=0.270 Sum_probs=309.3
Q ss_pred chHHHHHHhhccCCC-----CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc-cchhhhhhHHHHHHHHHHHHHcC
Q 010538 25 SIDQIRATEFKRLEN-----GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDISLATCDIVRAAREQVLDYFN 98 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~-----~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~ 98 (508)
++..+|+ +||.+.+ +.+|||+++.+++++.+++++.+ .+...+.+++.. +..++......+++++.++++++
T Consensus 4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 81 (406)
T 1kmj_A 4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAE-FYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 81 (406)
T ss_dssp CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHH-HHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHH-HHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 6788998 9999832 48999999999889988888755 444445566642 33344456778899999999999
Q ss_pred C-CCCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchH-HHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 99 A-SMKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVL-GIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 99 ~-~~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
. +++ +|++|+|+|+|+++++.++. .++|++|+++...|++.. .+...++..|++++.+|.+.++.+
T Consensus 82 ~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 152 (406)
T 1kmj_A 82 ARSAE--ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTL------- 152 (406)
T ss_dssp CSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCB-------
T ss_pred CCCCC--eEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCc-------
Confidence 9 566 89999999999999999983 578899999999998865 455556667999999998765544
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ +++ ++++++|++++++|+||.++|+++|.++|++ +|+++|+|++|+
T Consensus 153 --------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~~~~ 204 (406)
T 1kmj_A 153 --------QLETLP--TLF------DEKTRLLAITHVSNVLGTENPLAEMITLAHQ------------HGAKVLVDGAQA 204 (406)
T ss_dssp --------CGGGHH--HHC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTT
T ss_pred --------CHHHHH--HHh------ccCCeEEEEeCCCccccCcCCHHHHHHHHHH------------cCCEEEEEchhh
Confidence 577888 554 4578999999999999999999999999998 999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 254 CVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 254 ~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
.|..++++...++|++++|+||++| |.|+|++++++++++.+.+...+|........... ........+++.|++++
T Consensus 205 ~g~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 281 (406)
T 1kmj_A 205 VMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG--TTWTKAPWRFEAGTPNT 281 (406)
T ss_dssp TTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTE--EEECCTTGGGCCSSCCH
T ss_pred cCCCCCcccccCCCEEEEEchhccC-CCCcEEEEEeHHHHhhcCCcccCCCceeecccccc--cccCCCchhccCCCCCH
Confidence 9988777766689999999999997 88899999999998888877666543221100000 00012235667889999
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFG 413 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 413 (508)
.+++++.++++++.+.+++.+.+++.++++++.+.|+++ ++++++.+. . ++++++|.+++. +
T Consensus 282 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~-~------~~~~~~~~~~~~-----~ 343 (406)
T 1kmj_A 282 GGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV------PDLTLYGPQ-N------RLGVIAFNLGKH-----H 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS------TTEEEESCT-T------CCSEEEEEETTC-----C
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCC-C------cCCEEEEEECCC-----C
Confidence 999999889998877789999999999999999999987 368887653 1 278888887532 3
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
..++.+.|.++||.+++|..|..+.. +. +| .++++|||++.++|.+|++++++
T Consensus 344 ~~~~~~~l~~~gi~v~~g~~~~~~~~-~~-----------~g---------------~~~~iRis~~~~~t~~~i~~~~~ 396 (406)
T 1kmj_A 344 AYDVGSFLDNYGIAVRTGHHCAMPLM-AY-----------YN---------------VPAMCRASLAMYNTHEEVDRLVT 396 (406)
T ss_dssp HHHHHHHHHHTTEECEEECTTCHHHH-HH-----------TT---------------CSCEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeccccchHHH-Hh-----------cC---------------CCCeEEEEeecCCCHHHHHHHHH
Confidence 45688899999999999988876431 01 11 15789999999999999999999
Q ss_pred hhhhhhhhhh
Q 010538 494 SSFDFVNFSQ 503 (508)
Q Consensus 494 ~~~~~~~~~~ 503 (508)
.|++++++++
T Consensus 397 ~l~~~~~~l~ 406 (406)
T 1kmj_A 397 GLQRIHRLLG 406 (406)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9999988753
No 3
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.7e-40 Score=344.37 Aligned_cols=375 Identities=16% Similarity=0.145 Sum_probs=298.3
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+|+ +||.++++.+|||+++.+++++.+++++.+.+ ...+.+|.+.+..+.......+++++++++++|++++
T Consensus 12 ~~~~~r~-~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-- 87 (406)
T 3cai_A 12 DVARVRG-LHPSLGDGWVHFDAPAGMLIPDSVATTVSTAF-RRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG-- 87 (406)
T ss_dssp CHHHHHH-TCTTTTSSCEECBGGGCCCCCHHHHHHHHHHH-HHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG--
T ss_pred cHHHHHH-hhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHH-HhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC--
Confidence 8889998 99999445999999999999999988876544 4445566555554545567889999999999999877
Q ss_pred eEEEcCChHHHHHHHHhhc--CCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccC-CccCccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAF--PWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l--~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~ 180 (508)
+|++|+|+|+++.+++.++ ..++|++|+++..+|+++...+.. .+..|++++.+|.+ .++.+
T Consensus 88 ~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~-------------- 153 (406)
T 3cai_A 88 GVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGEL-------------- 153 (406)
T ss_dssp GEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCC--------------
T ss_pred eEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCc--------------
Confidence 8999999999999999887 357889999999999987665443 34469999999987 45544
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD 260 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d 260 (508)
|+++++ +++ +++|++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.|..+++
T Consensus 154 -d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~g~~~~~ 212 (406)
T 3cai_A 154 -PTWQWE--SLI------SKSTRLVAVNSASGTLGGVTDLRAMTKLVHD------------VGALVVVDHSAAAPYRLLD 212 (406)
T ss_dssp -CGGGHH--HHC------CTTEEEEEEESBCTTTCBBCCCHHHHHHHHH------------TTCEEEEECTTTTTTCCCC
T ss_pred -CHHHHH--HHh------CCCceEEEEeCCcCCccccCCHHHHHHHHHH------------cCCEEEEEcccccCCCCCC
Confidence 577888 554 4578999999999999999999999999998 8999999999999988888
Q ss_pred CCCCCCcEEEEeccccccCCCcce-EEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLG-ALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G-~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+..+++|++++|+||++| |. +| ++++++++++.+.+....++. ....++..||++..+++++
T Consensus 213 ~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~t~~~~~~~a~ 275 (406)
T 3cai_A 213 IRETDADVVTVNAHAWGG-PP-IGAMVFRDPSVMNSFGSVSTNPYA---------------TGPARLEIGVHQFGLLAGV 275 (406)
T ss_dssp HHHHCCSEEEEEGGGGTS-CS-CEEEEESCHHHHHTSCCCCSCTTC---------------CGGGGGCCSCCCHHHHHHH
T ss_pred chhcCCCEEEeehhhhcC-CC-cCeEEEEehHHHhhcCCcccCCCC---------------CccccccCCCccHHHHHHH
Confidence 777789999999999988 85 89 999999888777765221110 0145567889999999999
Q ss_pred HHHHHHHHhcC--------------hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 340 RHGFNLINSLT--------------VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 340 ~~al~~~~~~g--------------~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
.++++++.+.| ++.+.+++.++++++.+.|+++ ++++++.+... ++++++|.++
T Consensus 276 ~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~------~~~~~~~~~~ 343 (406)
T 3cai_A 276 VASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL------PLVMLIGRPEA------QIPVVSFAVH 343 (406)
T ss_dssp HHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTEEECCCCSS------BCSEEEEEET
T ss_pred HHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC------CCeEEcCCccc------cCCEEEEEEC
Confidence 99999887755 6889999999999999999987 36888766432 2568888886
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
+. +..++.+.|.++||.+++|.. ++++..+|.. ...+++|+|++.++|.
T Consensus 344 ~~-----~~~~~~~~L~~~gi~v~~g~~--------------~~~~~~~g~~------------~~~~~iRis~~~~~t~ 392 (406)
T 3cai_A 344 KV-----PADRVVQRLADNGILAIANTG--------------SRVLDVLGVN------------DVGGAVTVGLAHYSTM 392 (406)
T ss_dssp TB-----CHHHHHHHHHHTTEECEECCS--------------CHHHHHHTTT------------TTTCCEEEECCTTCCH
T ss_pred Cc-----CHHHHHHHHHHCCcEEecCCh--------------HHHHHHcCCC------------CCCCeEEEEeecCCCH
Confidence 42 345688889899999998751 1122223220 0147899999999999
Q ss_pred HHHHHHHHhhhhh
Q 010538 486 EDAKVNRCSSFDF 498 (508)
Q Consensus 486 eev~~l~~~~~~~ 498 (508)
+|+++++++|+++
T Consensus 393 e~i~~~~~~l~~~ 405 (406)
T 3cai_A 393 AEVDQLVRALASL 405 (406)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 4
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=341.74 Aligned_cols=355 Identities=14% Similarity=0.114 Sum_probs=274.8
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc---cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE-cCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ---SDISLATCDIVRAAREQVLDYFNASMKDYKCIF-TSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~-t~g~t~al 116 (508)
.--||.++++++|+.|++++.+ ++.++++|+.+. +..+..+.+.++++|+.+++++|++++ ++|+| |+|+|+++
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~-~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~-~evif~t~~~T~a~ 90 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQK-ELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN-YKVIFLQGGGCGQF 90 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHH-TSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHH-HHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-CeEEEEcCchHHHH
Confidence 4468999999999999999866 445666776654 344667889999999999999999653 38999 58999999
Q ss_pred HHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 117 KLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 117 ~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
++++.++.. ++|+++++...+|.+. +|.+.+++.|..++.++.++.... ++++++ .+
T Consensus 91 n~a~~~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~---------------~~~~~~--~~---- 148 (377)
T 3e77_A 91 SAVPLNLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTK---------------IPDPST--WN---- 148 (377)
T ss_dssp HHHHHHHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCS---------------CCCGGG--CC----
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCC---------------CCChHH--hc----
Confidence 999999843 2378887776666553 677888888988888887654333 345556 33
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K 275 (508)
.+++|++|+++|..|.||+++|+ ++++ +|+++++|++|++|..|+|+.+++ ++++|+||
T Consensus 149 --i~~~t~lV~~~h~et~tG~~~pi-----i~~~------------~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K 207 (377)
T 3e77_A 149 --LNPDASYVYYCANETVHGVEFDF-----IPDV------------KGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQK 207 (377)
T ss_dssp --CCTTCSCEEEESEETTTTEECSS-----CCCC------------TTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGG
T ss_pred --cCCCccEEEEeCccCchheEchh-----hhcc------------CCCEEEEEcccccCCCCCchhhcC--EEEEeccc
Confidence 36789999999999999999998 4565 899999999999999999999876 68999999
Q ss_pred cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHH
Q 010538 276 IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAI 354 (508)
Q Consensus 276 ~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i 354 (508)
++| |.|+|++++++++++.+.|..... .+|... .....+.+|||+.+++++.+|++++.+. |++.+
T Consensus 208 ~~g-p~G~g~l~~~~~~l~~~~~~~p~~---------~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i 274 (377)
T 3e77_A 208 NVG-SAGVTVVIVRDDLLGFALRECPSV---------LEYKVQ---AGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAM 274 (377)
T ss_dssp TTS-CTTCEEEEEETTSCSCCCTTSCGG---------GCHHHH---HTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ccC-CCccEEEEEcHHHHhhccCCCCch---------hhHHHH---hhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 997 999999999999987766543211 111111 1233457899999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-ccCHHHHHHHHhhCCCeeccCCC
Q 010538 355 CRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS-WFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 355 ~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
.+|..++++++++.|++++ ++.+...... .+.+.+++|.+++.++. .++ ..+.+.|.++||.++.|..
T Consensus 275 ~~~~~~l~~~l~~~L~~~~------g~~~~~~~~~----~rs~~ivsf~~~~~~~~~~~~-~~~l~~l~~~Gi~~~~g~~ 343 (377)
T 3e77_A 275 EKLSSIKSQTIYEIIDNSQ------GFYVCPVEPQ----NRSKMNIPFRIGNAKGDDALE-KRFLDKALELNMLSLKGHR 343 (377)
T ss_dssp HHHHHHHHHHHHHHHHTST------TSEECCSCGG----GBCSSEEEEEESSTTCCHHHH-HHHHHHHHHTTEESCBCCT
T ss_pred HHHHHHHHHHHHHHHHhcC------CceecCCCHH----HcCCcEEEEEcCCCCCchhHH-HHHHHHHHHCCcEEeCCCC
Confidence 9999999999999999983 6765432211 12345799999886542 121 2356677789999888752
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+.+|+|++++||.+||++++++|+++++-
T Consensus 344 -------------------------------------~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 344 -------------------------------------SVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp -------------------------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1356999999999999999999999998753
No 5
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=1e-39 Score=335.06 Aligned_cols=372 Identities=21% Similarity=0.233 Sum_probs=295.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
++|||+++.+++++.+++++.+.+ .+.+++|++.+..+.......+++++++++++|++++ +|++|+|+|+|+.+++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYM-TESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG--TVVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHH-HTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE--EEEEESSHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHH-HhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEcCchHHHHHHHH
Confidence 479999999999999999886644 4455677665555555677889999999999999887 8999999999999999
Q ss_pred hhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++. .++|++|+++..+|+++......++..|++++.+|.+.++.+ |+++++ +++
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i----- 135 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV---------------DVSFID--QKL----- 135 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCB---------------CHHHHH--HHC-----
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCcc---------------CHHHHH--HHh-----
Confidence 9984 267899999999999988777766667999999998765555 688888 555
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF 277 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~ 277 (508)
++++++|++++++||||.++|+++|.++|++ +|++ |+|++|++|..++++..+++|++++|+||++
T Consensus 136 -~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~ 201 (382)
T 4eb5_A 136 -RDDTILVSVQHANNEIGTIQPVEEISEVLAG------------KAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIY 201 (382)
T ss_dssp -CTTEEEEECCSBCTTTCBBCCHHHHHHHHTT------------SSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGT
T ss_pred -cCCCeEEEEeccCCCccccCCHHHHHHHHHH------------CCCE-EEEcchhcCCcccCccccCCCEEEeehHHhc
Confidence 3578999999999999999999999999998 9999 9999999988887776667999999999998
Q ss_pred cCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHH
Q 010538 278 GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 278 g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~ 357 (508)
| |.|+|+++++++. .+.+.+.++.. ...+..++++...++++.++++++.+ +++.+.++
T Consensus 202 g-~~g~G~~~~~~~~--~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~ 260 (382)
T 4eb5_A 202 G-PKGVGALWIRKEA--KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAM-EWREEAER 260 (382)
T ss_dssp C-CSSCEEEEEETTC--CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred C-CCceEEEEEcccc--ccCceecCCCc-----------------cccccCCCccHHHHHHHHHHHHHHHH-hHHHHHHH
Confidence 8 8899999998874 24554443321 23456788888888888889998766 58899999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCch
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPG 437 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~ 437 (508)
+.++++++.+.|+++ ++++++.+... +.+++++|.+++. +..++.+.|.++||.+++|..|...
T Consensus 261 ~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4eb5_A 261 LRRLRDRIIDNVLKI------EESYLNGHPEK-----RLPNNVNVRFSYI-----EGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECSCSSS-----BCTTEEEEEETTS-----CHHHHHHHHHHHTCBCBCCCGGGTS
T ss_pred HHHHHHHHHHHHhhC------CCeEEeCCccc-----CCCCEEEEEeCCc-----CHHHHHHHHHHCCEEEeccccccCC
Confidence 999999999999987 36888765431 2367888888642 3456888888999999999877553
Q ss_pred HHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 438 ACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 438 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.. .+++++..+|... ....+.+|++++.++|.+|++++++.|+++++.++.
T Consensus 325 ~~------~~~~~~~~~g~~~----------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 325 TL------QPSHVLMACGLKH----------EEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp SC------CCCHHHHHTTCCH----------HHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------cccHHHHHcCCCh----------hccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 2334444443210 012578999999999999999999999998876554
No 6
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=6.3e-41 Score=345.89 Aligned_cols=347 Identities=16% Similarity=0.110 Sum_probs=255.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc---cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE-cCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ---SDISLATCDIVRAAREQVLDYFNASMKDYKCIF-TSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~-t~g~t~al 116 (508)
.+|||+++++++|+.|++++.+ ++.++++||.+. ...+..+.+.++++|+.+++++|++.+ ++|+| |+|+|+++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~-~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~-~evif~t~~~T~a~ 104 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQ-ELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSN-YKVLFCHGGGRGQF 104 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTC-C-----------------------CCHHHHHHHHHHHTCCTT-EEEEEEESCTTHHH
T ss_pred cCccccCCCCCCCHHHHHHHHH-HHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCCchHHH
Confidence 5899999999999999999755 444556677653 234556678899999999999999642 38999 69999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccC-ccccccccccccccccchhhhhcCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVD-NDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~-~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
++++.++ +++|+++++...++.+. +|...+++.| +|..+|.+ ..+. + ++++++ .++
T Consensus 105 n~ai~~l-~~~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~---------------~~~~~~--~~l- 163 (386)
T 3qm2_A 105 AGVPLNL-LGDKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRA---------------VKPMRE--WQL- 163 (386)
T ss_dssp HHHHHHH-CTTCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEE---------------ECCGGG--CCC-
T ss_pred HHHHHhc-cCCCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCC---------------CchHHH--hhc-
Confidence 9999998 57788876555545443 6777777889 99999987 4443 3 456677 444
Q ss_pred CCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
+++|++|+++|+.|.||++ .|+++|. +|+++++|++|++|..|+|+++++ ++++|
T Consensus 164 -----~~~t~lV~~~h~et~tG~~i~pi~~i~-----------------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s 219 (386)
T 3qm2_A 164 -----SDNAAYLHYCPNETIDGIAIDETPDFG-----------------PEVVVTADFSSTILSAPLDVSRYG--VIYAG 219 (386)
T ss_dssp -----CTTCSCEEECSEETTTTEECCCCCCCC-----------------TTCCEEEECTTTTTSSCCCGGGCS--EEEEE
T ss_pred -----CCCCcEEEEECCcCCcCEecCchhhhc-----------------CCCEEEEEcccccCCCCCCccccC--EEEEe
Confidence 5789999999999999996 8888874 499999999999999999999875 67799
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-Ch
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TV 351 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~ 351 (508)
+|||+| |.|+|++|+++++++++.|..... .+|.. ..+.....||+|+++++++.+|++++.+. |+
T Consensus 220 ~hK~lG-P~G~g~l~v~~~~~~~~~~~~p~~---------~~~~~---~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~ 286 (386)
T 3qm2_A 220 AQKNIG-PAGLTLVIVREDLLGKAHESCPSI---------LDYTV---LNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGV 286 (386)
T ss_dssp TTTTTC-CTTEEEEEEEGGGCSCCCTTSCGG---------GCHHH---HHHC-------CCSHHHHHHHHHHHHHHHTHH
T ss_pred cccccC-CCccEEEEECHHHHhhhcccCCcH---------HHHHH---HhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 999998 999999999999987776542210 01110 11234456899999999999999999998 89
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
+++.++..++++++++.|+++ ++ ....++. .+..++++|.+++. .++ ..+.+.|.++||.++.
T Consensus 287 ~~i~~~~~~l~~~l~~~l~~~-------~~~~~~~~~~-----~rs~~iv~f~~~~~---~~~-~~~~~~L~~~gI~~~~ 350 (386)
T 3qm2_A 287 AAMHKINQQKAELLYGVIDNS-------DFYRNDVAQA-----NRSRMNVPFQLADN---TLD-KVFLEESFAAGLHALK 350 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-------SSEECCBCGG-----GBCSSEEEEEESSG---GGH-HHHHHHHHHTTEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHC-------CCcccCCCHH-----HcCceEEEEECCCc---ccc-HHHHHHHHHCCCEEeC
Confidence 999999999999999999987 33 3222222 23357999999752 123 3467778999999988
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|..| .+.+|+|++.+||.+||++++++|++|.+
T Consensus 351 g~~~-------------------------------------~~~iRiS~~~~~t~edId~l~~~l~~~~~ 383 (386)
T 3qm2_A 351 GHRV-------------------------------------VGGMRASIYNAMPIEGVKALTDFMIDFER 383 (386)
T ss_dssp CCTT-------------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCC-------------------------------------cCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 7644 24599999999999999999999998865
No 7
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=100.00 E-value=4e-38 Score=324.09 Aligned_cols=378 Identities=19% Similarity=0.226 Sum_probs=289.9
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+|+ +||.. ++.+|||+++.+++|+.+++++.+.+......++.+ +...........++++.+++++|++++
T Consensus 3 ~~~~~r~-~f~~~-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~y~~~~~~~~~l~~~la~~~g~~~~-- 77 (390)
T 1elu_A 3 MITPSLH-QFPGL-ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS-IAANQHIQQLIAQLRQALAETFNVDPN-- 77 (390)
T ss_dssp --------CCGGG-TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHHHHHHTTSCGG--
T ss_pred chHHHHH-hcCCC-CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc-hhhHHHHHHHHHHHHHHHHHHcCCCHH--
Confidence 4667898 99998 899999999999888888888765443211112221 101111246678899999999999887
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHH-HHHHHhcCCeEEEEccC--CccCcccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGI-REYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~-~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~ 181 (508)
+|++|+|+|+|+.+++.++.+++|++|+++...|+++... ...++..|++++.+|.+ .+..+
T Consensus 78 ~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~--------------- 142 (390)
T 1elu_A 78 TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGD--------------- 142 (390)
T ss_dssp GEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSC---------------
T ss_pred HEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccc---------------
Confidence 8999999999999999998567889999999999887653 34456679999999986 33334
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHc----CCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKK----NPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~----~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|+++++ +++ ++++++|++++++||||.++|+++|.++|+ + +|+++|+|++|+.|..
T Consensus 143 d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~------------~~~~li~Dea~~~g~~ 202 (390)
T 1elu_A 143 AAAVLA--NHL------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGN------------YPVRVLVDGAQSAGSL 202 (390)
T ss_dssp HHHHHH--TTC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSS------------SCCEEEEECTTTBTTB
T ss_pred hHHHHH--Hhc------CCCceEEEEeccccCCceecCHHHHHHHHhhhhhh------------cCcEEEEEcccccCCc
Confidence 688999 555 457899999999999999999999999999 7 8999999999999999
Q ss_pred CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
++++...++|++++|+||++++|.|+|++++++++++.+.+...|+++.........|. ......++..|+++...++
T Consensus 203 ~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 280 (390)
T 1elu_A 203 PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTG--WAEGGKRFEVATSAYPQYA 280 (390)
T ss_dssp CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEE--ECSGGGGGCCSCCCHHHHH
T ss_pred CCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCcccccccCcccc--cccchHhhCCCCCCHHHHH
Confidence 98888888999999999955548889999999999888887766665432211111110 0111345667889988888
Q ss_pred HHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 338 SIRHGFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 338 ~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
++.++++.+.+.+ ++++.++++++++++.+.|+++ ++++++.|... .+++++|+++.. .+..+
T Consensus 281 a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~------~~~~~~~~~~~~----~~~~~ 344 (390)
T 1elu_A 281 GLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL------PHVHCLATSAP------QAGLVSFTVDSP----LGHRA 344 (390)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS------TTEEESCSSCC------SSSEEEEEECSS----SCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc------CCcEEecCccc------cccEEEEEcCCC----CCHHH
Confidence 8988999887655 8999999999999999999987 37888865311 278888888521 23456
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.+++|. .++++|||++.++|.+|+++++++|+
T Consensus 345 ~~~~l~~~gi~v~~~~--------------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 345 IVQKLEEQRIYLRTIA--------------------------------------DPDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp HHHHHHHTTEECEEET--------------------------------------TTTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEecC--------------------------------------CCCeEEEecccCCCHHHHHHHHHHHH
Confidence 8888989999998863 14789999999999999999999987
Q ss_pred hh
Q 010538 497 DF 498 (508)
Q Consensus 497 ~~ 498 (508)
++
T Consensus 387 ~~ 388 (390)
T 1elu_A 387 DF 388 (390)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 8
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=100.00 E-value=1.3e-38 Score=330.90 Aligned_cols=393 Identities=21% Similarity=0.292 Sum_probs=307.0
Q ss_pred chHHHHHHhhccCCCC------CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHc
Q 010538 25 SIDQIRATEFKRLENG------TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYF 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~------~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~ 97 (508)
.+..+|+ +||.+ ++ .+|||++..+++|+.+.+++.+ .+.....+++. .+..+.......+++++.+++++
T Consensus 9 ~~~~~r~-~f~~~-~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~ 85 (420)
T 1t3i_A 9 LAATVRQ-DFPIL-NQEINGHPLVYLDNAATSQKPRAVLEKLMH-YYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI 85 (420)
T ss_dssp HHHHHGG-GCGGG-SCEETTEECEECBTTTCCCCCHHHHHHHHH-HHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-hCCcc-ccccCCCceEEecCCccCCCCHHHHHHHHH-HHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHc
Confidence 7888998 99998 55 8999999999888888888755 44444455553 23333333567888999999999
Q ss_pred CC-CCCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchHH-HHHHHHhcCCeEEEEccCCccCccccccc
Q 010538 98 NA-SMKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVLG-IREYALSQGAAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 98 ~~-~~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v~~v~~~~~~~~~~l~~~ 172 (508)
+. +++ +|++|+|+|+|+.+++.++. .++|++|+++...|++... +...++..|++++.+|.+.++.+
T Consensus 86 ~~~~~~--~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------ 157 (420)
T 1t3i_A 86 NARSPR--EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESF------ 157 (420)
T ss_dssp TCSCGG--GEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSB------
T ss_pred CCCCCC--eEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCc------
Confidence 99 666 89999999999999999983 5788999999999988643 34455567999999998765545
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ ++++++|++++++||||.++|+++|.++|++ +|+++|+|++|
T Consensus 158 ---------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~ 208 (420)
T 1t3i_A 158 ---------DLEHFK--TLL------SEKTKLVTVVHISNTLGCVNPAEEIAQLAHQ------------AGAKVLVDACQ 208 (420)
T ss_dssp ---------CHHHHH--HHC------CTTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------TTCEEEEECTT
T ss_pred ---------CHHHHH--Hhh------CCCceEEEEeCCcccccCcCCHHHHHHHHHH------------cCCEEEEEhhh
Confidence 688888 555 4578999999999999999999999999998 99999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEeccc-chhhhhhccCccccccCCCC
Q 010538 253 GCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 253 ~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~gt~ 331 (508)
+.|..++++...++|++++|+||++| |.|+|++++++++++.+.+...+|........ ...| .....++..|++
T Consensus 209 ~~~~~~~~~~~~~~di~~~s~sK~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 283 (420)
T 1t3i_A 209 SAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT----GELPHKFEAGTP 283 (420)
T ss_dssp TTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE----CCTTGGGCCSSC
T ss_pred ccCCccCchhhcCCCEEEEehhhhcC-CCceEEEEEchHHHhhcCceecCCCccccccccccCC----CCchhhccCCCc
Confidence 99988777777789999999999888 87899999999998888877655543221100 0001 122455667899
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
++.+.+++.++++++.+.+++.+.++.+++++++.+.|+++ ++++++.+.... ..++++++|.+++
T Consensus 284 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~---~~~~~~~~~~~~~----- 349 (420)
T 1t3i_A 284 AIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI------PQLRLYGPNPKH---GDRAALASFNVAG----- 349 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC------TTEEEESCCGGG---SCBCSEEEEEETT-----
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC------CCeEEeCCCccc---cccCCEEEEEECC-----
Confidence 99999999889998877788999999999999999999987 378887664200 0127888888764
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVN 491 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l 491 (508)
.+..++.+.|.++||.+++|..|..+.. ..+| .++++|+|++.++|.+|++++
T Consensus 350 ~~~~~~~~~l~~~gi~v~~~~~~~~~~~------------~~~g---------------~~~~iRis~~~~~~~~~i~~~ 402 (420)
T 1t3i_A 350 LHASDVATMVDQDGIAIRSGHHCTQPLH------------RLFD---------------ASGSARASLYFYNTKEEIDLF 402 (420)
T ss_dssp BCHHHHHHHHHTTTEECBCSCTTCHHHH------------HHTT---------------CCCCEEEECCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHCCeEEeeccccchHHH------------HhcC---------------CCCeEEEecCCCCCHHHHHHH
Confidence 2345688999999999999988865421 1111 157899999999999999999
Q ss_pred HHhhhhhhhhhh
Q 010538 492 RCSSFDFVNFSQ 503 (508)
Q Consensus 492 ~~~~~~~~~~~~ 503 (508)
+++|+++++.++
T Consensus 403 ~~~l~~~~~~~~ 414 (420)
T 1t3i_A 403 LQSLQATIRFFS 414 (420)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 9
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=100.00 E-value=2.3e-39 Score=335.04 Aligned_cols=375 Identities=17% Similarity=0.144 Sum_probs=279.7
Q ss_pred hccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChH
Q 010538 34 FKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGAT 113 (508)
Q Consensus 34 f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t 113 (508)
||...++.||||+++.+++++.+++++.+. +.+.+++|...+..+.......+++++++++++|++++ +|++|+|+|
T Consensus 14 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~~~g~t 90 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATTRVDQRVADIVLHW-MTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD--ELIFTSGAT 90 (400)
T ss_dssp --------CCCCCCCCSSSCHHHHHHHHHH-HHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG--GEEEESCHH
T ss_pred CCcccCCcEEecCCCCCCCCHHHHHHHHHH-HHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC--cEEEeCCHH
Confidence 444448899999999999999998887654 44556777765555566678889999999999999987 899999999
Q ss_pred HHHHHHHhhcC---CCCCC-eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVGEAFP---WSHQS-SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~~~l~---~~~g~-~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+++++.++. .++|+ +|+++..+||++......++..|++++.+|.+.++.+ |+++++
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~-- 153 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRI---------------SVEGVM-- 153 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCC---------------CHHHHH--
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCc---------------CHHHHH--
Confidence 99999999983 16789 9999999999988877777778999999999876666 689999
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEE
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFV 269 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~ 269 (508)
+++ ++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.|..++++... +|++
T Consensus 154 ~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~------------~~~~li~D~a~~~~~~~~~~~~~-~d~~ 214 (400)
T 3vax_A 154 ERL------RPDTLLVSLMHVNNETGVIQPVAELAQQLRA------------TPTYLHVDAAQGYGKVPGDLTTP-IDMI 214 (400)
T ss_dssp TTC------CTTEEEEECCSBCTTTCBBCCHHHHHHHHTT------------SSCEEEEECTTTTTTSGGGGGSC-CSEE
T ss_pred Hhc------CCCceEEEEECCCCCceeeCcHHHHHHHHHh------------cCCEEEEEhhhhcCCCCcChhhc-CcEE
Confidence 555 4678999999999999999999999999998 99999999999999988888877 9999
Q ss_pred EEeccccccCCCcceEEE-EechhH----hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTGLGALI-MRNDAA----KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~-~~~~~~----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++|+||++| |.|+|+++ ++++.+ ..+.+.+.++.. ...+..++++...++++.++++
T Consensus 215 ~~s~~K~~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~ 276 (400)
T 3vax_A 215 SISGHKIGA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQ-----------------ERKLRPGTLPVPLIMGLAEAAK 276 (400)
T ss_dssp EEETGGGTS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHH
T ss_pred EEeHHHhCC-CCceEEEEEecchhccccccccCceecCCCc-----------------eeeeecCCCCHHHHHHHHHHHH
Confidence 999999877 88999999 987322 234454443321 4456778999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~ 424 (508)
++.+ +++++.++..++++++.+.|+ . ++++++.+... ..+++++|.+++. +..++.+.|. +
T Consensus 277 ~~~~-~~~~~~~~~~~~~~~l~~~L~-~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~~L~-~ 337 (400)
T 3vax_A 277 IFEA-EHAQWQVAAQDLRSRLLAGLA-S------TSFQVNGDQDH-----VVPHILNLSFEDV-----DAEAFLVTLK-D 337 (400)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHT-T------TTCEECSCTTS-----BCTTEEEEECTTC-----CHHHHHHHHH-H
T ss_pred HHHh-hHHHHHHHHHHHHHHHHHhhC-C------CCEEEeCCccc-----CCCCEEEEEeCCC-----CHHHHHHHHh-c
Confidence 8765 689999999999999999998 5 47888876542 2357888888653 3346888999 9
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.+++|..|..... .+++++.++|.. .....+++||++ +.++|.+|++++++.|+++++
T Consensus 338 gi~v~~g~~~~~~~~------~~~~~~~~~g~~----------~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 338 LVAVATGSASTSASF------TPSHVLRAMGLP----------EEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp HHHHTTTTEEEEEEE------CCHHHHHTTTCC----------HHHHTSEEEEEEEEC-------------------
T ss_pred CcEEEecccccCCCC------CccHHHHHcCCC----------ccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 999999988765421 334455555431 001148999999 999999999999999988764
No 10
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=4.8e-38 Score=322.52 Aligned_cols=370 Identities=20% Similarity=0.242 Sum_probs=286.1
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHh
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~ 121 (508)
+|||+++.+++++.+++++.+.. .+.+.+|...+..++......+++++++++++|++++ +|++|+|+|+|+.+++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~~~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFY-REKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS--EIFFTSCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHH-HTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG--GEEEESCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHH-HhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC--eEEEECCHHHHHHHHHH
Confidence 89999999999999999876644 4455666654455556678889999999999999887 89999999999999999
Q ss_pred hcCC---CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 122 AFPW---SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 122 ~l~~---~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.. ++|++|+++...|+++......++..|.+++.+|.+.++.+ |+++++ +++
T Consensus 80 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i------ 136 (384)
T 1eg5_A 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV---------------KLEELE--KLV------ 136 (384)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCB---------------CHHHHH--HHC------
T ss_pred hhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCcc---------------CHHHHH--HHh------
Confidence 9852 68899999999999887777666778999999998765545 688888 555
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC--eEEEEeccccCCCCCCCCCCCCCcEEEEecccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR--WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g--~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~ 276 (508)
.+++++|++++++||||.++|+++|.++|++ +| +++|+|++|++|..++++..+++|++++|+||+
T Consensus 137 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~ 204 (384)
T 1eg5_A 137 DEDTFLVSIMAANNEVGTIQPVEDVTRIVKK------------KNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKF 204 (384)
T ss_dssp CTTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------HCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCcccccCHHHHHHHHHh------------cCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHh
Confidence 4578999999999999999999999999997 89 999999999998888888777899999999999
Q ss_pred ccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHH
Q 010538 277 FGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICR 356 (508)
Q Consensus 277 ~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~ 356 (508)
+| |.|+|+++++++. .+.+.+.++.. ...+..++++...++++.++++.+.+ +++++.+
T Consensus 205 ~g-~~G~G~~~~~~~~--~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~ 263 (384)
T 1eg5_A 205 HG-PKGVGITYIRKGV--PIRPLIHGGGQ-----------------ERGLRSGTQNVPGIVGAARAMEIAVE-ELSEAAK 263 (384)
T ss_dssp TS-CTTCEEEEECTTS--CCCCSBCSSCT-----------------TTTTBCSCCCHHHHHHHHHHHHHHHH-THHHHHH
T ss_pred cC-CCceEEEEEcCCC--ccccccccCcc-----------------cccccCCCCChHHHHHHHHHHHHHHH-hHHHHHH
Confidence 88 8889999999875 23444333211 22345678888888888889887644 5889999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
++.++++++.+.|++. +++++.+... ..+.+++|.+++. +..++.+.|.++||.+++|..|..
T Consensus 264 ~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~ 326 (384)
T 1eg5_A 264 HMEKLRSKLVSGLMNL-------GAHIITPLEI-----SLPNTLSVSFPNI-----RGSTLQNLLSGYGIYVSTSSACTS 326 (384)
T ss_dssp HHHHHHHHHHHHHHTT-------TCEECSCTTS-----BCTTEEEEECTTC-----CHHHHHHHHHHTTEECBC------
T ss_pred HHHHHHHHHHHHhCCC-------CeEEeCCccc-----CCCCEEEEEeCCC-----CHHHHHHHHhhCCeEEeccccccC
Confidence 9999999999999874 6777765421 1257888887643 345688899999999999987754
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
... .+++++.++|.. .....+++||+++.++|.+|++++++.|+++++.++
T Consensus 327 ~~~------~~~~~~~~~g~~----------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 327 KDE------RLRHVLDAMGVD----------RRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp ------------CHHHHTTCC----------HHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCC------cchHHHHHcCCC----------hhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 321 233444444421 000147899999999999999999999999876553
No 11
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=100.00 E-value=7.8e-40 Score=346.59 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=294.1
Q ss_pred chHHHHHHhhccCC---------------CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC-Cccchh-hhhhHHHH
Q 010538 25 SIDQIRATEFKRLE---------------NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDIS-LATCDIVR 87 (508)
Q Consensus 25 ~~~~~r~~~f~~~~---------------~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 87 (508)
.+..+|+ +|+... ++.+|||+++.++.|+.+.+++.+.+ .. |.+.. ..+..+ ..+....+
T Consensus 38 ~l~~~r~-~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l-~~-~~~~~~~~~~~~~~~~~~~~~ 114 (465)
T 3e9k_A 38 KLRHFRE-CFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEEL-DK-WAKIAAYGHEVGKRPWITGDE 114 (465)
T ss_dssp TTGGGGG-GEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHH-HH-HHHHGGGGGTSSSSCGGGTTH
T ss_pred cHHHHHH-hcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHH-HH-HHhhCCcccccCCccHHHhHH
Confidence 3556888 998772 37899999999988887766554322 22 21111 011110 11234557
Q ss_pred HHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC--CCCCCeEEEecccccchHH-HHHHHHhcCCeE-----EEEc
Q 010538 88 AAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP--WSHQSSYMYTMENHNSVLG-IREYALSQGAAA-----FAID 159 (508)
Q Consensus 88 ~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~-~~~~~~~~G~~v-----~~v~ 159 (508)
++++++++++|++++ +|++|+|+|+++++++.++. ...+++|+++..+|++... +...++..|+++ ..+|
T Consensus 115 ~l~~~la~~~g~~~~--~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~ 192 (465)
T 3e9k_A 115 SIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKP 192 (465)
T ss_dssp HHHGGGHHHHTCCGG--GEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECC
T ss_pred HHHHHHHHHcCCCcC--CEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEec
Confidence 789999999999988 89999999999999999983 2234569999999998766 444667788774 3445
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
.++++.+ |+++++ ++|+++ ++++++|++++++|+||.+.|+++|.++|++
T Consensus 193 ~~~~~~~---------------d~~~l~--~~i~~~---~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~---------- 242 (465)
T 3e9k_A 193 REGEETL---------------RIEDIL--EVIEKE---GDSIAVILFSGVHFYTGQHFNIPAITKAGQA---------- 242 (465)
T ss_dssp CTTCSSC---------------CHHHHH--HHHHHH---GGGEEEEEEESBCTTTCBBCCHHHHHHHHHH----------
T ss_pred CCCCCcc---------------CHHHHH--HHHHhc---CCCeEEEEEeCcccCcceeecHHHHHHHHHH----------
Confidence 5555555 578887 555321 2579999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccc-cCCCcceEEEEechhHhhhccccccCceEEeccc-chhhhh
Q 010538 240 SKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIF-GYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVK 317 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~-g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~ 317 (508)
+|+++++|++|+.|..++++.++++||+++|+||++ ++|.|+|+++++++.++.+.+...||........ ......
T Consensus 243 --~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 320 (465)
T 3e9k_A 243 --KGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKL 320 (465)
T ss_dssp --TTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCC
T ss_pred --cCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCc
Confidence 999999999999999999998889999999999988 3598899999999998888877666532110000 000000
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC----CCCCceEEEecCCCCCccc
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH----ENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~----~~~~~~~~~~~~~~~~~~~ 393 (508)
.......+++.||+++.+++++.++++++.+.|+++++++..++++++.+.|+++.. ....++++++.|...
T Consensus 321 ~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~---- 396 (465)
T 3e9k_A 321 QLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHV---- 396 (465)
T ss_dssp CBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSG----
T ss_pred CcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCH----
Confidence 112346788899999999999999999999889999999999999999999987410 000137899887542
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
..++++++|.++ .+... +.+.|.++||.++.+ .++
T Consensus 397 ~~~g~~~~~~~~-~~~~~-----l~~~L~~~Gi~v~~~---------------------------------------~~~ 431 (465)
T 3e9k_A 397 EERGCQLTITFS-VPNKD-----VFQELEKRGVVCDKR---------------------------------------NPN 431 (465)
T ss_dssp GGBCSCEEEEEC-CTTCC-----HHHHHHTTTEECEEE---------------------------------------TTT
T ss_pred hhcccEEEEEec-CCHHH-----HHHHHHHCCEEEecC---------------------------------------CCC
Confidence 245889999987 33333 788999999998632 157
Q ss_pred eEEEec-CCCCCHHHHHHHHHhhhhhhhhh
Q 010538 474 AIRVSF-GYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 474 ~iRis~-~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++|+|+ +.++|.+||+++++.|+++++..
T Consensus 432 ~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 432 GIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp EEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 999999 89999999999999999987654
No 12
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=4.7e-38 Score=327.78 Aligned_cols=375 Identities=19% Similarity=0.228 Sum_probs=302.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhc--cccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTT--NVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
++.+|||+++.+++++.+++++.+ .+. ..+++|.. .+..++......++++++++++++++++ +|++|+|+|+|
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~--~v~~~~ggt~a 97 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQ-FMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR--EIVFTSGATES 97 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTT-SSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG--GEEEESSHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHH-HHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC--eEEEeCChHHH
Confidence 789999999999999999888755 444 45677776 5556666778889999999999999988 89999999999
Q ss_pred HHHHHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 116 LKLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 116 l~~~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
+.+++.++. .++|++|+++...|+++...+..++..|++++.+|.+.++.+ |+++++ +++
T Consensus 98 ~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 160 (423)
T 3lvm_A 98 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGII---------------DLKELE--AAM 160 (423)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCC---------------CHHHHH--HHC
T ss_pred HHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCcc---------------CHHHHH--Hhc
Confidence 999998874 236899999999999988777766778999999999876655 688888 555
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
.+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|
T Consensus 161 ------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~di~~~s 222 (423)
T 3lvm_A 161 ------RDDTILVSIMHVNNEIGVVQDIAAIGEMCRA------------RGIIYHVDATQSVGKLPIDLSQLKVDLMSFS 222 (423)
T ss_dssp ------CTTEEEEECCSBCTTTCBBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCTTTSCCSEEEEE
T ss_pred ------CCCcEEEEEeCCCCCCccccCHHHHHHHHHH------------cCCEEEEEhhhhcCCCCcChhhcCCCEEEec
Confidence 4578999999999999999999999999998 8999999999999999899988899999999
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
+||++| |.|+|+++++++..+.+.+...+++. ...+..++++...++++.++++++.+. ++
T Consensus 223 ~sK~~g-~~g~G~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~-~~ 283 (423)
T 3lvm_A 223 GHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGH-----------------ERGMRSGTLPVHQIVGMGEAYRIAKEE-MA 283 (423)
T ss_dssp STTTTS-CSSCEEEEECBTTBCCCCCSSCSSCT-----------------TTTTCCSCCCHHHHHHHHHHHHHHHHH-HH
T ss_pred hHHhcC-CCCeEEEEEeccccCCCCccccCCcc-----------------cccccCCCCCHHHHHHHHHHHHHHHHH-HH
Confidence 999888 88899999999887777776555432 344567889999999998899987665 89
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC 432 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~ 432 (508)
++.++..++++++.+.|+++ ++++++.+... +.+++++|.+++. +..++.+.|.+ |.+++|.
T Consensus 284 ~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~~l~~--i~v~~g~ 345 (423)
T 3lvm_A 284 TEMERLRGLRNRLWNGIKDI------EEVYLNGDLEH-----GAPNILNVSFNYV-----EGESLIMALKD--LAVSSGS 345 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTS------TTEEEESCSTT-----BCTTEEEEEETTS-----CHHHHHHHTTT--EECBCCC
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCEEEeCCccc-----cCCCeEEEEeCCC-----CHHHHHHHHhh--heeccCc
Confidence 99999999999999999887 47888876542 2357888888543 33457788876 9999998
Q ss_pred CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 433 FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 433 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
.|.+... .+++++..+|.. .....+.+|++++..+|.+|++++++.|+++++.++.
T Consensus 346 ~~~~~~~------~~~~~~~~~g~~----------~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 346 ACTSASL------EPSYVLRALGLN----------DELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp C-----C------CCCHHHHHHTCC----------HHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCc------cccHHHHHhCCC----------ccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8876421 233444445431 0012478999999999999999999999998876654
No 13
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=8.4e-38 Score=319.74 Aligned_cols=346 Identities=14% Similarity=0.123 Sum_probs=264.3
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCcc---chhhhhhHHHHHHHHHHHHHcCCCCCCceEEE-cCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQS---DISLATCDIVRAAREQVLDYFNASMKDYKCIF-TSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~-t~g~t~al 116 (508)
.+|+=+++++++|+.|++++.+. +.++++||.+.+ ..+..+.+.++++|+.+++++|++.. ++|+| |+|+|+++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~-~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~-~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKE-LCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD-YEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHT-SSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHH-HHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCcHHHHH
Confidence 45666678888999999998664 445667776643 23556789999999999999999643 28998 99999999
Q ss_pred HHHHhhcCCCCCCe---EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 117 KLVGEAFPWSHQSS---YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 117 ~~~~~~l~~~~g~~---vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
++++.++. ++++ |+++..+| +|...+++.|++|..++.++.+.... ++ + .
T Consensus 83 n~~~~~~~--~~~~~~~i~~~~~~~----~~~~~a~~~G~~v~~~~~~~~g~~~~-------------~~---~---~-- 135 (361)
T 3m5u_A 83 AMIPMNLA--LNGVCEYANTGVWTK----KAIKEAQILGVNVKTVASSEESNFDH-------------IP---R---V-- 135 (361)
T ss_dssp HHHHHHHC--CSSCEEEEECSHHHH----HHHHHHHHTTCCEEEEEECTTTTSCS-------------CC---C---C--
T ss_pred HHHHHhcC--CCCeEEEEeCCHHHH----HHHHHHHHcCCceEEEecccCcCCCc-------------CC---h---h--
Confidence 99999984 4553 33334433 56677778899999999987653100 01 1 1
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEec
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~ 273 (508)
. .+++|++|+++|..|.||.++|. +++ +|+++++|++|++|+.|+|+++ +|++++|+
T Consensus 136 --~-l~~~t~lv~~~~~e~~tG~~~~~-----i~~-------------~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~ 192 (361)
T 3m5u_A 136 --E-FSDNADYAYICSNNTIYGTQYQN-----YPK-------------TKTPLIVDASSDFFSRKVDFSN--IALFYGGV 192 (361)
T ss_dssp --C-CCTTSSEEEEESEETTTTEECSS-----CCC-------------CSSCEEEECGGGTTSSCCCCTT--EEEEEEET
T ss_pred --h-cCCCCCEEEEeCCCCCcceeCCc-----ccc-------------cCCEEEEEcccccCCCCCCccc--CCEEEEec
Confidence 1 24689999999999999999882 333 4999999999999999999985 79999999
Q ss_pred cccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVP 352 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~ 352 (508)
|||+| |.|+|++++++++++.+.|...+. ..+|... .......+|||+++++++.+|++++.+. |++
T Consensus 193 ~K~~g-p~G~g~l~~~~~~~~~~~~~~~p~--------~~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~ 260 (361)
T 3m5u_A 193 QKNAG-ISGLSCIFIRKDMLERSKNKQIPS--------MLNYLTH---AENQSLFNTPPTFAIYMFNLEMDWLLNQGGLD 260 (361)
T ss_dssp TTTSS-CTTCEEEEEEHHHHHHHHTCCCCG--------GGCHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHH
T ss_pred hhccC-CCccEEEEEcHHHHhhhcCCCCCc--------eeehHHH---hhcCCCCCCccHHHHHHHHHHHHHHHHccCHH
Confidence 99998 999999999999988877631111 0111110 0233456899999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG 431 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g 431 (508)
++.+|..++++++++.|++++ ++ +++.++. .+..++++|.+++..+ ++ .++.+.|.++||.++.|
T Consensus 261 ~i~~~~~~l~~~l~~~L~~~~------g~~~~~~~~~-----~rs~~ivsf~~~~~~~--~~-~~~~~~L~~~gI~~~~g 326 (361)
T 3m5u_A 261 KVHEKNSQKATMLYECIDLSN------GFYKGHADKK-----DRSLMNVSFNIAKNKD--LE-PLFVKEAEEAGMIGLKG 326 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHTST------TSEEESSCGG-----GBCSSEEEEEESSCTT--HH-HHHHHHHHHTTEECCBC
T ss_pred HHHHHHHHHHHHHHHHHHHCC------CeeeccCCHH-----HcCCeEEEEECCCchh--hh-HHHHHHHHHCCCEEecC
Confidence 999999999999999999883 34 5554432 2336799999986211 22 24778899999999887
Q ss_pred CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 432 CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+ .+.+|+|++.|||.+||++++++|++|.+-
T Consensus 327 ~~~-------------------------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 327 HRI-------------------------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp CTT-------------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCc-------------------------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 532 245999999999999999999999988753
No 14
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=100.00 E-value=1.9e-37 Score=319.72 Aligned_cols=368 Identities=12% Similarity=0.030 Sum_probs=283.5
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
+||.+ ++.+|||+++.+++++.+++++.+ .+. + + .+.......+++++++++++|++++ +|++|+|+
T Consensus 2 ~fp~~-~~~~yl~~~~~~~~~~~v~~a~~~-~~~----~-~----~~~~~~~~~~~l~~~la~~~g~~~~--~v~~t~g~ 68 (392)
T 2z9v_A 2 RYPEH-ADPVITLTAGPVNAYPEVLRGLGR-TVL----Y-D----YDPAFQLLYEKVVDKAQKAMRLSNK--PVILHGEP 68 (392)
T ss_dssp CCCTT-SCCSEECSSSCCCCCHHHHHHTTS-CCC----C-T----TSHHHHHHHHHHHHHHHHHTTCSSC--CEEESSCT
T ss_pred CcccC-CCcceeecCCCcCCCHHHHHHHhc-ccc----c-c----ccHHHHHHHHHHHHHHHHHhCCCCC--EEEEeCCc
Confidence 69999 899999999999999988877643 221 1 1 1233456788999999999999877 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
|+|+.+++.++ .++|++|+++..+|+++. +...++..|++++.+|.+.++.+ |+++++ +++
T Consensus 69 t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l 129 (392)
T 2z9v_A 69 VLGLEAAAASL-ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAI---------------DPQAVA--DML 129 (392)
T ss_dssp HHHHHHHHHHH-CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCC---------------CHHHHH--HHH
T ss_pred hHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 688999999998898874 55666667999999998765545 678887 554
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
++ ++++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|..++++..+++|++++|
T Consensus 130 ~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s 193 (392)
T 2z9v_A 130 KA----HPEITVVSVCHHDTPSGTINPIDAIGALVSA------------HGAYLIVDAVSSFGGMKTHPEDCKADIYVTG 193 (392)
T ss_dssp HH----CTTCCEEEEESEEGGGTEECCHHHHHHHHHH------------TTCEEEEECTTTBTTBSCCGGGGTCSEEEEC
T ss_pred hc----CCCCcEEEEeccCCCCceeccHHHHHHHHHH------------cCCeEEEEcccccCCcccccccccceEEEec
Confidence 21 3578999999999999999999999999998 9999999999999988888877789999999
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccC-ccccccCCCCChhHHHHHHHHHHHHHhcCh
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG-VEELFEDGTASFLSIASIRHGFNLINSLTV 351 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~~l~~al~~~~~~g~ 351 (508)
+||++++|.|+|+++++++.++.+++...|.+. ... .+...... ....+..++++...++++.++++++.+.|+
T Consensus 194 ~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 268 (392)
T 2z9v_A 194 PNKCLGAPPGLTMMGVSERAWAKMKANPLAPRA--SML---SIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGP 268 (392)
T ss_dssp SSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCS--STT---CSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CcccccCCCceeEEEECHHHHHHhhhccCCCCc--eec---cHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 999766588999999999988777653211000 000 00000000 023455788999999999999998887789
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeecc
Q 010538 352 PAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRT 430 (508)
Q Consensus 352 ~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~ 430 (508)
+++.++++++++++.+.|+++ +++++.++.. .+.+++++|.++.. .+..++.+.|.++ ||.+++
T Consensus 269 ~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~ 333 (392)
T 2z9v_A 269 EAVWARHALTAKAMRAGVTAM-------GLSVWAASDS----IASPTTTAVRTPDG----VDEKALRQAARARYGVVFSS 333 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-------TCCBSSSSGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------CCeeccCCcc----ccCCceEEEECCCC----CCHHHHHHHHHhcCCEEEec
Confidence 999999999999999999886 4666653221 12378888988531 2345688888886 999998
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC-CCCHHHHHHHHHhhhhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY-MSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|..+. .++.+|+|++. ++|.+|++++++.|+++++.++
T Consensus 334 g~~~~-----------------------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 334 GRGET-----------------------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp CCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC-----------------------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 75310 25789999654 8999999999999998876543
No 15
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=100.00 E-value=1.3e-36 Score=318.25 Aligned_cols=388 Identities=20% Similarity=0.191 Sum_probs=285.4
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
.|..+||.+ ++.+|||+++.+++++.+++++.+.+ ...+.+|...+..+....+..+++++++++++|++++ +|++
T Consensus 8 ~~~~~~~~~-~~~~~Ld~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~--~v~~ 83 (432)
T 3a9z_A 8 ARGSVESPP-NRKVYMDYNATTPLEPEVIQAVTEAM-KEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ--DIIF 83 (432)
T ss_dssp -----------CCEECBTTTCCCCCHHHHHHHHHHH-HHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG--GEEE
T ss_pred ccccccCCC-CCcEEeeCCccCCCCHHHHHHHHHHH-HHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC--eEEE
Confidence 344479988 89999999999999999988876644 4456677766655556677889999999999999877 8999
Q ss_pred cCChHHHHHHHHhhcCC-------CCC-------------CeEEEecccccchHHHHHH-HHhcCCeEEEEccCC-ccCc
Q 010538 109 TSGATAALKLVGEAFPW-------SHQ-------------SSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEE-AVDN 166 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~-------~~g-------------~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~-~~~~ 166 (508)
|+|+|+|+.+++.++.. ++| +.|+++..+|+++...+.. .+..|++++.+|.+. ++.+
T Consensus 84 ~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~ 163 (432)
T 3a9z_A 84 TSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQV 163 (432)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSC
T ss_pred eCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCc
Confidence 99999999999988730 345 5788888899988665554 455799999999875 4444
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC---
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR--- 243 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g--- 243 (508)
|+++++ +++ +++|++|++++++||||.++|+++|.++|++ +|
T Consensus 164 ---------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~~ 208 (432)
T 3a9z_A 164 ---------------EVEDIL--AAV------RPTTCLVTIMLANNETGVIMPISEISRRIKA------------LNQIR 208 (432)
T ss_dssp ---------------CHHHHH--HTC------CTTEEEEECCSBCTTTCBBCCHHHHHHHHHH------------HHHHH
T ss_pred ---------------CHHHHH--Hhc------cCCceEEEEECcccCcccccCHHHHHHHHHh------------cCccc
Confidence 688888 555 4578999999999999999999999999997 78
Q ss_pred -------eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechh-HhhhccccccCceEEecccchhh
Q 010538 244 -------WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 244 -------~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+++|+|++|+.|..++++...++|++++|+||++| |. +|+++++++. ...+.+.+.+++.
T Consensus 209 ~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~~~~~~~~~~~---------- 276 (432)
T 3a9z_A 209 AASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLTPLYPMLFGGGQ---------- 276 (432)
T ss_dssp HHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTBCCCCSCCSSCG----------
T ss_pred ccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcC-Cc-ceEEEEccccccCCcCceeecCCc----------
Confidence 99999999999988888766689999999999998 87 9999999876 4445665555432
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
...+..++++...++++.++++++.+ +++++.+++.++++++.+.|+++++ ..+.+.++.... ..
T Consensus 277 -------~~~~~~~~~~~~~~~a~~aal~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~---~~ 341 (432)
T 3a9z_A 277 -------ERNFRPGTENTPMIAGLGKAADLVSE-NCETYEAHMRDIRDYLEERLEAEFG----KRIHLNSRFPGV---ER 341 (432)
T ss_dssp -------GGGTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHG----GGEEESSCCTTC---CB
T ss_pred -------cccccCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHhccC----CcEEEeCCCCcc---cC
Confidence 34567789999999999999998765 6899999999999999999988531 124444441100 12
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
.+.+++|.+++.. .+...+.+.+ .||.++.|..|.+... ..+++++..+|... ....+++
T Consensus 342 ~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~G~~~~~~~~-----~~~~~~l~~~g~~~----------~~~~~~i 401 (432)
T 3a9z_A 342 LPNTCNFSIQGSQ---LRGYMVLAQC--QTLLASVGASCHSDHE-----DRPSPVLLSCGIPV----------DVARNAV 401 (432)
T ss_dssp CTTEEEEEECSTT---CCHHHHHHHC--SSEECBSSCGGGGGGT-----TSCCHHHHHTTCCH----------HHHTTEE
T ss_pred CCCEEEEEeCCCC---CcHHHHHHHh--cCeEEeccccccCCCC-----CCccHHHHhcCCCc----------cccCceE
Confidence 2568889987632 1223344444 4899998887765321 01223333333200 0014789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|||++.++|.+|++++++.|+++++.+
T Consensus 402 Ris~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 402 RLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887654
No 16
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-36 Score=310.62 Aligned_cols=370 Identities=14% Similarity=0.083 Sum_probs=286.8
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCc
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDY 104 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~ 104 (508)
...+|+ +||.+ +..+|||+++.+++++.+.+++.+ ... + .+ +.......+++++.+++++|++ ++
T Consensus 7 ~~~~r~-~f~~~-~~~~~l~~~~~~~~~~~v~~a~~~-~~~----~---~~--~~~~~~~~~~~~~~la~~~g~~~~~-- 72 (386)
T 2dr1_A 7 EEAFKE-VYEMV-KPKYKLFTAGPVACFPEVLEIMKV-QMF----S---HR--SKEYRKVHMDTVERLREFLEVEKGE-- 72 (386)
T ss_dssp HHHHHH-HHHHH-SCCSEECCSSSCCCCHHHHHHTTS-CCC----C---TT--SHHHHHHHHHHHHHHHHHHTCSSSE--
T ss_pred hHHHHH-HHhhc-CccceeecCCCcCCcHHHHHHHhc-ccc----c---cc--CHHHHHHHHHHHHHHHHHhCCCCCc--
Confidence 457898 99988 678999999999999988877533 211 1 11 2224677889999999999997 55
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchh
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
++++|+|+|+|+.+++.++ .++|++|+++...|++. .+...++..|++++.+|.+.++.+ |++
T Consensus 73 ~v~~~~g~t~a~~~~~~~l-~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~ 135 (386)
T 2dr1_A 73 VLLVPSSGTGIMEASIRNG-VSKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAV---------------KPE 135 (386)
T ss_dssp EEEESSCHHHHHHHHHHHH-SCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHH
T ss_pred EEEEeCChHHHHHHHHHHh-hcCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCC---------------CHH
Confidence 7999999999999999998 67899999998888763 144556667999999998765545 678
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY 264 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~ 264 (508)
+++ +++++ ++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.|..++++..+
T Consensus 136 ~l~--~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~ 197 (386)
T 2dr1_A 136 DLD--DALRK----NPDVEAVTITYNETSTGVLNPLPELAKVAKE------------HDKLVFVDAVSAMGGADIKFDKW 197 (386)
T ss_dssp HHH--HHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTT
T ss_pred HHH--HHHhc----CCCCcEEEEEeecCCcchhCCHHHHHHHHHH------------cCCeEEEEccccccCcccccccc
Confidence 887 55421 3578999999999999999999999999998 99999999999999888888888
Q ss_pred CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc-ccccCCCCChhHHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE-ELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~~l~~al 343 (508)
++|++++|+||++++|.|+|++++++++++.+.+....+.. . ++........ .....++++...++++.+++
T Consensus 198 ~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 270 (386)
T 2dr1_A 198 GLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWY----F---DIPLYVKYLKEKESTPSTPPMPQVFGINVAL 270 (386)
T ss_dssp TCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCST----T---CHHHHHHHHHHHSSCSSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceE----E---eHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Confidence 89999999999988777899999999988777543111110 0 0100000001 23456788888899999999
Q ss_pred HHHHhc-ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 344 NLINSL-TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 344 ~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+.+.+. +++++.++++++++++.+.|+++ +++++.+... +.++++++.++.. .+..++.+.|.
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~ 334 (386)
T 2dr1_A 271 RIIEKMGGKEKWLEMYEKRAKMVREGVREI-------GLDILAEPGH-----ESPTITAVLTPPG----IKGDEVYEAMR 334 (386)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCTTC-----BCSSEEEEECCTT----CCHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeeCcCccc-----cCCceEEEEcCCC----CCHHHHHHHHH
Confidence 988776 78999999999999999999886 4666554321 2378899988632 23456888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++||.+++|..+. ..+++|+|++.++|.+|++++++.|+++++.+
T Consensus 335 ~~gi~v~~~~~~~-----------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 335 KRGFELAKGYGSV-----------------------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp HTTEECEECCGGG-----------------------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCeEEecCcccc-----------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 8899999875210 15789999999999999999999999887654
No 17
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=1.3e-35 Score=301.09 Aligned_cols=343 Identities=15% Similarity=0.045 Sum_probs=270.5
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhh
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEA 122 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~ 122 (508)
|+.+++.+++++.+++++.+.. . . + .++......+++++++++++|++++ ++++|+|+|+|+.+++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~-~----~-~----~~~~~~~~~~~l~~~la~~~g~~~~--~i~~~~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQ-L----H-H----RTEAAREVFLKARGLLREAFRTEGE--VLILTGSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCC-C----C-T----TSHHHHHHHHHHHHHHHHHHTCSSE--EEEEESCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCC-C----C-c----cCHHHHHHHHHHHHHHHHHhCCCCc--eEEEcCchHHHHHHHHHh
Confidence 7888888889999988875432 1 1 1 1233456788999999999999877 899999999999999999
Q ss_pred cCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 123 FPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+ .++|++|+++..+|+++. +...++..|++++.+|.+.++.+ |+++++ . +++
T Consensus 71 ~-~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--------~---~~~ 122 (352)
T 1iug_A 71 L-FAPGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTP---------------RPEDVA--------K---EGY 122 (352)
T ss_dssp H-CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCC---------------CTTTSC--------C---SSC
T ss_pred c-cCCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCC---------------CHHHHh--------c---cCC
Confidence 8 678999999999999887 66667778999999998765544 455666 2 567
Q ss_pred eEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCC
Q 010538 203 NLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYP 280 (508)
Q Consensus 203 ~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P 280 (508)
++|++++++||||.++|+++|.++|++ + |+++|+|++|++|..++++...++|++++|+||++++|
T Consensus 123 ~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~ 190 (352)
T 1iug_A 123 AGLLLVHSETSTGALADLPALARAFKE------------KNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCP 190 (352)
T ss_dssp SEEEEESEETTTTEECCHHHHHHHHHH------------HCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCC
T ss_pred cEEEEEEecCCcceecCHHHHHHHHHh------------hCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCC
Confidence 999999999999999999999999997 8 99999999999998888877778999999999966558
Q ss_pred CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 010538 281 TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIAS 360 (508)
Q Consensus 281 ~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~ 360 (508)
.|+|+++++++.++.+.+ .++. .+...+.. .....+..++++...++++.++++.+.+. ++++.+++++
T Consensus 191 ~g~G~~~~~~~~~~~~~~--~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~ 259 (352)
T 1iug_A 191 PGLGFVALSPRALERLKP--RGYY-----LDLARELK---AQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAW 259 (352)
T ss_dssp SCEEEEEECHHHHHTCCC--CSST-----TCHHHHHH---HHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHH
T ss_pred CceeEEEECHHHHHHhhC--CCce-----eeHHHHHh---hcccCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 899999999988766554 1110 00000000 01224456888999999999999987665 8899999999
Q ss_pred HHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHH
Q 010538 361 LGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 361 l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~ 440 (508)
+++++.+.|+++ +++++.+.. .+++++|.+++. .+..++.+.|.++||.+++|..+ .
T Consensus 260 ~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~---~-- 316 (352)
T 1iug_A 260 QNALLYGVGEEG-------GLRPVPKRF-------SPAVAAFYLPEG----VPYARVKEAFAQRGAVIAGGQGP---L-- 316 (352)
T ss_dssp HHHHHHHHHHHT-------TCEESCSSB-------CTTCEEEECCTT----CCHHHHHHHHHTTTEECEECCGG---G--
T ss_pred HHHHHHHHHHHC-------CCccccccc-------CCeEEEEEcCCC----CCHHHHHHHHHHCCEEEEeCCCc---c--
Confidence 999999999886 577765531 278999998631 33456888898899999987521 0
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++++|++++.++|.+|+++++++|+++++.
T Consensus 317 ------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 317 ------------------------------KGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp ------------------------------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999988754
No 18
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=100.00 E-value=8.7e-36 Score=307.40 Aligned_cols=371 Identities=11% Similarity=0.048 Sum_probs=282.1
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
.++ +||.+.++.+|+++.+..++++.+++++.+.. . . + + ........+++++++++++|+++++ +|++
T Consensus 8 ~~~-~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~-~----~-~--~--~~~~~~~~~~l~~~la~~~g~~~~~-~i~~ 75 (393)
T 2huf_A 8 PAV-LREPLVTPNKLLMGPGPSNAPQRVLDAMSRPI-L----G-H--L--HPETLKIMDDIKEGVRYLFQTNNIA-TFCL 75 (393)
T ss_dssp CGG-GGSCCCCCCCEECSSSCCCCCHHHHHHTTSCC-C----C-T--T--SHHHHHHHHHHHHHHHHHHTCCCSE-EEEE
T ss_pred hhh-hhcccCCCCeEEecCCCCCCCHHHHHHHHhhh-c----c-C--C--CHHHHHHHHHHHHHHHHHhCCCCCc-EEEE
Confidence 566 89999888999999998888998887764322 1 1 1 1 1224567889999999999997642 6999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+|+|+.+++.++ .++|++|+++...|+++ .+...++..|.+++.+|.+.++.+ |+++++
T Consensus 76 ~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~- 137 (393)
T 2huf_A 76 SASGHGGMEATLCNL-LEDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSL---------------SLDEIR- 137 (393)
T ss_dssp SSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHHHHH-
T ss_pred cCcHHHHHHHHHHHH-hCCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCC---------------CHHHHH-
Confidence 999999999999998 67899999999888875 355566678999999998765544 577887
Q ss_pred CCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCc
Q 010538 189 GASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVD 267 (508)
Q Consensus 189 ~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D 267 (508)
+++ ++ ++++|++++++||||.++|+++|.++|++ +|+++|+|++|++|..++++..+++|
T Consensus 138 -~~i------~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d 198 (393)
T 2huf_A 138 -DAL------LIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQ------------HNCLLIVDTVASLGGAPMFMDRWEID 198 (393)
T ss_dssp -HHH------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTTTCS
T ss_pred -HHH------hccCCcEEEEEccCCCccccCCHHHHHHHHHH------------cCCEEEEEcccccCCCCcchhhcCcc
Confidence 444 34 68999999999999999999999999998 89999999999999988888878899
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhcccc---ccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY---FSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++++|+||++++|.|+|++++++++++.+.+.- ..+.. .. .....+. ......++..++++...++++.++++
T Consensus 199 ~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~al~ 274 (393)
T 2huf_A 199 AMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYW-DM-SLVGDYW--GCFGRPRIYHHTISSTLLYGLREAIA 274 (393)
T ss_dssp EEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG-CH-HHHHHHT--TCSSSCCCCSCCCCHHHHHHHHHHHH
T ss_pred EEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEE-ch-HHHHhhh--ccccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999997655889999999998887765431 11000 00 0000000 00113456778999999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL- 423 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~- 423 (508)
++.+.+++++.+++.++++++.+.|+++ +++++.+... +.+.++++.++.. .+..++.+.|.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~L~~~ 338 (393)
T 2huf_A 275 MACEEGLPALIARHEDCAKRLYRGLQDA-------GFELYADPKD-----RLSTVTTIKVPQG----VDWLKAAQYAMKT 338 (393)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGGG-----BCTTEEEEECCTT----CCHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCeeccCccc-----cCCcEEEEEcCCC----CCHHHHHHHHHHh
Confidence 8877689999999999999999999886 4666654321 1245888888521 234457777765
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~~~~~~~ 502 (508)
+||.+++|..|. .++++||+++.+ ++.+|+++++++|+++++.+
T Consensus 339 ~gi~v~~g~~~~-----------------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 339 YLVEISGGLGPT-----------------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp HCEECBCCCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCcccc-----------------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 599999876331 157899999655 57999999999999887654
Q ss_pred h
Q 010538 503 Q 503 (508)
Q Consensus 503 ~ 503 (508)
+
T Consensus 384 ~ 384 (393)
T 2huf_A 384 K 384 (393)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=100.00 E-value=6.9e-36 Score=310.69 Aligned_cols=374 Identities=15% Similarity=0.109 Sum_probs=279.2
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
++..+|+ +||.+ ++.+|||+++.+++|+.+.+++.+.+ ...++++..............+++++++++++|++++
T Consensus 15 ~~~~~r~-~f~~~-~~~~yld~~~~~~~~~~v~~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-- 89 (416)
T 1qz9_A 15 SLAPLRQ-QFALP-EGVIYLDGNSLGARPVAALARAQAVI-AEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG-- 89 (416)
T ss_dssp TTGGGGG-GBCCC-TTCEECCTTTSCCCBTTHHHHHHHHH-HTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT--
T ss_pred hhHHHHH-hCCCC-CCeEeecCCCcCCCcHHHHHHHHHHH-HHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcc--
Confidence 6788998 99998 89999999999988888888876644 3334444221011112246678899999999999887
Q ss_pred eEEEcCChHHHHHHHHhhcC-C----CCCCe-EEEecccccchHHHHHH-HHhc--CCeEEEEccCCccCcccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAFP-W----SHQSS-YMYTMENHNSVLGIREY-ALSQ--GAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~-~----~~g~~-vl~~~~~h~s~~~~~~~-~~~~--G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
+|++|+|+++++.+++.++. + ++|+. |+++...|+++...+.. .+.. |++++.+|. ++
T Consensus 90 ~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~~-------- 156 (416)
T 1qz9_A 90 EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-----PE-------- 156 (416)
T ss_dssp SEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-----GG--------
T ss_pred cEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-----HH--------
Confidence 89999999999988887762 3 56764 77777899987665443 3334 899999886 32
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV 255 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g 255 (508)
+++ +++ ++++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|++|
T Consensus 157 ---------~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~g 207 (416)
T 1qz9_A 157 ---------ELP--QAI------DQDTAVVMLTHVNYKTGYMHDMQALTALSHE------------CGALAIWDLAHSAG 207 (416)
T ss_dssp ---------GHH--HHC------STTEEEEEEESBCTTTCBBCCHHHHHHHHHH------------HTCEEEEECTTTTT
T ss_pred ---------HHH--HHh------CCCceEEEEeccccCcccccCHHHHHHHHHH------------cCCEEEEEcccccc
Confidence 234 333 3578999999999999999999999999998 89999999999999
Q ss_pred CCCCCCCCCCCcEEEEeccccccCCCcc-eEEEEechhHhhhccccccCceEEeccc-chhhhhhccCccccccCCCCCh
Q 010538 256 TQPPDLSKYPVDFVVMSFYKIFGYPTGL-GALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 256 ~~~~d~~~~~~D~~~~S~~K~~g~P~G~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
..++++..+++|++++|+||+++++.|+ |++++++++++.+.+...|+.......+ ...+. ......++..|+++.
T Consensus 208 ~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 285 (416)
T 1qz9_A 208 AVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE--PSNGIARYLCGTQPI 285 (416)
T ss_dssp TSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCC--BCSSGGGGCCSCCCH
T ss_pred CcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccC--CCcchHHhcCCCCCH
Confidence 8888776667999999999986435566 9999999988777775544311000000 00000 011234567789999
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc--eEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGAD--VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
..++++.++++.+.+.+++++.+++.++++++.+.|+++. + +++++.+... ..+++++++.+++
T Consensus 286 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~g~~~~~~~~~----~~~~~~~~~~~~~----- 351 (416)
T 1qz9_A 286 TSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRC-----AAHELTLVTPREH----AKRGSHVSFEHPE----- 351 (416)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-----TTSCCEECSCSSG----GGBCSEEEEECTT-----
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhc-----cCCCeEEeCCCCH----HHcCCEEEEecCC-----
Confidence 9999999999988767899999999999999999998751 2 5777765421 0236788888753
Q ss_pred cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHH
Q 010538 412 FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~ 490 (508)
..++.+.|.++||.+... ..+.+|+|++ +++|.+|+++
T Consensus 352 --~~~l~~~l~~~gi~~~~~---------------------------------------~~~~lRis~~~~~~t~~~i~~ 390 (416)
T 1qz9_A 352 --GYAVIQALIDRGVIGDYR---------------------------------------EPRIMRFGFTPLYTTFTEVWD 390 (416)
T ss_dssp --HHHHHHHHHTTTEECEEE---------------------------------------TTTEEEEECCTTTCCHHHHHH
T ss_pred --HHHHHHHHHhCCcEeccC---------------------------------------CCCeEEEeCcccCCCHHHHHH
Confidence 235888888999986431 1578999998 6999999999
Q ss_pred HHHhhhhhhhhh
Q 010538 491 NRCSSFDFVNFS 502 (508)
Q Consensus 491 l~~~~~~~~~~~ 502 (508)
+++.|+++++..
T Consensus 391 ~~~~l~~~~~~~ 402 (416)
T 1qz9_A 391 AVQILGEILDRK 402 (416)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 999999987653
No 20
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=1.3e-34 Score=294.55 Aligned_cols=355 Identities=13% Similarity=0.102 Sum_probs=269.1
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g~t~al~~~~ 120 (508)
.++.+.+...+++.+++++.+.+.....+.. ..+....+..+++++++++++|++ ++ +|++|+|+|+|+.+++
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~~~~~--~v~~~~g~t~al~~~~ 78 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVIS----HRSKKFEEVYKTASDNLKTLLELPSNY--EVLFLASATEIWERII 78 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSC----TTSHHHHHHHHHHHHHHHHHTTCCTTE--EEEEESCHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcC----CCCHHHHHHHHHHHHHHHHHhCCCCCc--EEEEeCCchHHHHHHH
Confidence 3556666777788898877665533221111 123345678889999999999985 45 8999999999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++. ++ +.+++. ..|.+ ..+...++..|++++.++.+.+..+ |+++++ .++
T Consensus 79 ~~l~-~~-~~i~~~-~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~----------~~~ 129 (362)
T 3ffr_A 79 QNCV-EK-KSFHCV-NGSFS-KRFYEFAGELGREAYKEEAAFGKGF---------------YPADIT----------VPA 129 (362)
T ss_dssp HHHC-SS-EEEEEE-CSHHH-HHHHHHHHHTTCEEEEEECCTTCCC---------------CGGGCC----------CCT
T ss_pred Hhcc-CC-cEEEEc-CcHHH-HHHHHHHHHhCCCeEEEecCCCCCC---------------CHHHHh----------ccC
Confidence 9984 44 444444 43434 3445566778999999998765544 344443 257
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC-CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG-RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~-g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
+|++|++++++||||.++|+++|.++|++ + |+++|+|++|+.+..++++.+ +|++++|+||++++
T Consensus 130 ~~~~v~~~~~~nptG~~~~l~~i~~la~~------------~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~ 195 (362)
T 3ffr_A 130 DAEIICLTHNETSSGVSMPVEDINTFRDK------------NKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGL 195 (362)
T ss_dssp TCCEEEEESEETTTTEECCHHHHTTSGGG------------STTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCC
T ss_pred CccEEEEEcCCCCcceeCCHHHHHHHHHh------------CCCCEEEEecccccCCcccChhH--CcEEEEecccccCC
Confidence 89999999999999999999999998887 9 999999999999998888876 89999999999998
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
|.|+|++++++++++.+.+...||+......+...+.. ........++++...++++.++++++.+.|++.+.+++.
T Consensus 196 ~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 272 (362)
T 3ffr_A 196 PAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLE---KARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE 272 (362)
T ss_dssp CSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHH---HHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHH---HhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 88999999999998888776655443222211111111 112233478899999999999999888778999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 439 (508)
++++++.+.|+++ ++++++.+... .....+++|.+++ + ..++.+.|.++||.+++|..|.
T Consensus 273 ~~~~~l~~~L~~~------~g~~~~~~~~~----~~~~~~~~~~~~~-~-----~~~~~~~l~~~gi~~~~g~~~~---- 332 (362)
T 3ffr_A 273 EKAALINTYIESS------KVFSFGVEDAK----LRSMTTIVANTTM-L-----PGEINKILEPFDMAVGAGYGSK---- 332 (362)
T ss_dssp HHHHHHHHHHHHC------SSEEESSSCGG----GBCSSEEEEEESS-C-----HHHHHHHHGGGTEEEEECSGGG----
T ss_pred HHHHHHHHHHHHc------cCceeccCChh----hcCCceEEEecCC-C-----HHHHHHHHHHCCeEEecCcccc----
Confidence 9999999999987 47888764321 1336788888876 2 3458888988899999875321
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.++++|+|++.++|.+|+++++++|+++.
T Consensus 333 -------------------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 -------------------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp -------------------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred -------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 25789999999999999999999998764
No 21
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=100.00 E-value=8.4e-35 Score=300.23 Aligned_cols=368 Identities=13% Similarity=0.021 Sum_probs=279.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCc
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDY 104 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~ 104 (508)
+++.+|. +||.+....+|+++++.+++++.+++++.+ ... + .+ +.......+++++.+++++|++++ +
T Consensus 19 ~~~~~r~-~~~~~~~~~~~l~~~~~~~~~~~v~~a~~~-~~~----~---~~--~~~~~~~~~~~~~~la~~~g~~~~-~ 86 (393)
T 1vjo_A 19 INDNQRL-QLEPLEVPSRLLLGPGPSNAHPSVLQAMNV-SPV----G---HL--DPAFLALMDEIQSLLRYVWQTENP-L 86 (393)
T ss_dssp CCCTTCC-CCCSCCCCCCEECSSSCCCCCHHHHHHHSS-CCC----C---TT--SHHHHHHHHHHHHHHHHHHTCCCS-C
T ss_pred ecchhhh-cCCccCCccceeccCCCCCCCHHHHHHHhc-ccc----c---cc--CHHHHHHHHHHHHHHHHHhCCCCC-c
Confidence 5667888 999886668999999999999998877643 221 1 11 122457788999999999999754 2
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchh
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
+|++|+|+|+|+++++.++ .++|++|+++...|++. .+...++..|++++.+|.+.++.+ |++
T Consensus 87 ~v~~t~g~t~al~~~~~~~-~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~ 149 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANA-VEPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVF---------------SLE 149 (393)
T ss_dssp EEEESSCHHHHHHHHHHHH-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHH
T ss_pred EEEEeCchHHHHHHHHHhc-cCCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCC---------------CHH
Confidence 6999999999999999998 67889999998777762 244556667999999998765545 578
Q ss_pred hhhcCCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCC
Q 010538 185 QRRKGASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSK 263 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~ 263 (508)
+++ +++ ++ ++++|++++++||||.+.|+++|.++|++ +|+++|+|++|++|..++++..
T Consensus 150 ~l~--~~l------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~ 209 (393)
T 1vjo_A 150 ELR--TAL------ETHRPAILALVHAETSTGARQPLEGVGELCRE------------FGTLLLVDTVTSLGGVPIFLDA 209 (393)
T ss_dssp HHH--HHH------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------HTCEEEEECTTTTTTSCCCTTT
T ss_pred HHH--HHH------hhCCceEEEEeccCCCcceeccHHHHHHHHHH------------cCCEEEEECCccccCcCCcccc
Confidence 887 444 23 67899999999999999999999999998 8999999999999998888888
Q ss_pred CCCcEEEEeccccccCCCcceEEEEechhHhhhccc---cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT---YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.++|++++|+||++++|.|+|++++++++++.+... ..++.. .. .....|. ...++..|+++...++++.
T Consensus 210 ~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-----~~~~~~~g~~~~~~~~a~~ 282 (393)
T 1vjo_A 210 WGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL-DM-NLLGKYW-----GSERVYHHTAPINLYYALR 282 (393)
T ss_dssp TTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT-CH-HHHHHHH-----STTCCCCSCCCHHHHHHHH
T ss_pred cCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec-Cc-Hhhhhhh-----ccCCCCCCCCCHHHHHHHH
Confidence 889999999999888787899999999987766321 111100 00 0000000 0123344588899899999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
++++.+.+.+++++.+++.++++++.+.|+++ +++++.+.+. ..+++++|.++.. .+..++.+.
T Consensus 283 ~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~ 346 (393)
T 1vjo_A 283 EALRLIAQEGLANCWQRHQKNVEYLWERLEDI-------GLSLHVEKEY-----RLPTLTTVCIPDG----VDGKAVARR 346 (393)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGGG-----BCSSEEEEECCTT----CCHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCccc-----cCCcEEEEEcCCC----CCHHHHHHH
Confidence 99998766688999999999999999999886 4666655321 1257888887532 234568888
Q ss_pred HhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHHHHHhhhhh
Q 010538 421 ASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 421 L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~l~~~~~~~ 498 (508)
|.++ ||.+++|..|. .++++|||++ +.++++++++++++|+++
T Consensus 347 l~~~~gi~v~~g~~~~-----------------------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 347 LLNEHNIEVGGGLGEL-----------------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp HHHHHCEECEECCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEecCcccc-----------------------------------CCCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 8877 99999886331 1578999964 456777899999999887
Q ss_pred h
Q 010538 499 V 499 (508)
Q Consensus 499 ~ 499 (508)
+
T Consensus 392 l 392 (393)
T 1vjo_A 392 L 392 (393)
T ss_dssp H
T ss_pred h
Confidence 5
No 22
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=100.00 E-value=1e-34 Score=297.70 Aligned_cols=355 Identities=14% Similarity=0.088 Sum_probs=270.4
Q ss_pred eeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC--CCceEEEcCChHHHHHHHHh
Q 010538 44 LDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM--KDYKCIFTSGATAALKLVGE 121 (508)
Q Consensus 44 ld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~--~~~~i~~t~g~t~al~~~~~ 121 (508)
+-+.+..++++.+++++.+... . ..+.......+++++++++++|+++ + +|++|+|+|+|+. ++.
T Consensus 5 ~~~~gp~~~~~~v~~a~~~~~~------~----~~~~~~~~~~~~~~~~la~~~~~~~~~~--~v~~~~g~t~al~-~~~ 71 (384)
T 3zrp_A 5 LLHVGPTTIKEDVLVAGLENNV------G----FTSKEFVEALAYSLKGLRYVMGASKNYQ--PLIIPGGGTSAME-SVT 71 (384)
T ss_dssp -CCSSCSCCCHHHHHHTTCCSC------C----TTSHHHHHHHHHHHHHHHHHHTCCTTSE--EEEEESCHHHHHH-HGG
T ss_pred eccCCCCCCCHHHHHHhhcccc------c----cccHHHHHHHHHHHHHHHHHhCCCCCCc--EEEEcCCcHHHHH-HHH
Confidence 3345566678888777643221 0 1123346778899999999999987 6 8999999999999 888
Q ss_pred hcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 122 AFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 122 ~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
++ .++|++|+++...|++. .+...++..|++++.+|.+.++.+ |+++++ +++. ..+
T Consensus 72 ~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i~-----~~~ 127 (384)
T 3zrp_A 72 SL-LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYV---------------KPGEVE--EEVR-----KSE 127 (384)
T ss_dssp GG-CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCC---------------CHHHHH--HHHH-----HSC
T ss_pred hh-cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCC---------------CHHHHH--HHHH-----hCC
Confidence 88 78899999988777653 344556678999999999876655 678887 5542 126
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCC
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPT 281 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~ 281 (508)
+++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|+||++++|.
T Consensus 128 ~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~ 195 (384)
T 3zrp_A 128 YKLVALTHVETSTGVREPVKDVINKIRK------------YVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAA 195 (384)
T ss_dssp EEEEEEESEETTTTEECCHHHHHHHHGG------------GEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCS
T ss_pred CcEEEEeCCCCCCceECcHHHHHHHHHh------------cCCEEEEECcccccCccccccccCCCEEEecCcccccCCC
Confidence 8999999999999999999999999998 9999999999999999999988899999999999886688
Q ss_pred cceEEEEechhHhhh-ccccccCceEEecccchhhhhhccC-cc-ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHH
Q 010538 282 GLGALIMRNDAAKLL-KNTYFSGGTVAASIADIDFVKRRQG-VE-ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHI 358 (508)
Q Consensus 282 G~G~l~~~~~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~-~~-~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~ 358 (508)
|+|+++++++.++.+ .+....+. ......+...... .. .....|+++...++++.++++++.+.+++++.+++
T Consensus 196 g~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 271 (384)
T 3zrp_A 196 GLGLLLLSPKALSILDSQNSIAGY----YLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRH 271 (384)
T ss_dssp SEEEEEECHHHHHHHHHCCCSCCS----TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ceEEEEECHHHHHHhcCCCCCCcc----cccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999998777 43211100 0000011000000 00 22233689999999999999998888899999999
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 359 ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 359 ~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
+++++++.+.|+++ +++++.+... ...+++++|.+++. +..++.+.|.++||.+++|..|.
T Consensus 272 ~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~--- 332 (384)
T 3zrp_A 272 TMVASAIRAGLEAL-------GLEIVARRPE----SYSNTVTGVILKVA-----DPQKVLAGTVNEGVEFAPGVHPA--- 332 (384)
T ss_dssp HHHHHHHHHHHHHT-------TCCBSCSSGG----GBCSSEEEEECSSS-----CHHHHHHHHHTTTCCCEECCCTT---
T ss_pred HHHHHHHHHHHHHC-------CCeEccCccc----ccCccEEEEECCCC-----CHHHHHHHHHHCCEEEecCCCCC---
Confidence 99999999999987 4666655411 12367888988762 34568899998999999875321
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+++|++++.++|.+|++++++.|+++++.++
T Consensus 333 ---------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 333 ---------------------------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp ---------------------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 16899999999999999999999999886543
No 23
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=100.00 E-value=1.1e-34 Score=293.69 Aligned_cols=347 Identities=14% Similarity=0.085 Sum_probs=265.4
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al~~~~ 120 (508)
++.+++.+++++.+++++.+.. . + + .+.......+++++++++++|++ ++ ++++|+|+|+|+.+++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~-~----~-~----~~~~~~~~~~~l~~~la~~~g~~~~~~--~v~~t~g~t~a~~~~~ 69 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPM-R----G-H----LDPEVLRVNRAIQERLAALFDPGEGAL--VAALAGSGSLGMEAGL 69 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCC-C----C-T----TCHHHHHHHHHHHHHHHHHHCCCTTCE--EEEESSCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhccc-c----c-c----cCHHHHHHHHHHHHHHHHHhCCCCCCc--eEEEcCCcHHHHHHHH
Confidence 3445666777888877764322 1 1 1 12334567889999999999996 55 8999999999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++. + ++|+++..+|+++ .+...++..|++++.+|.+.++.+ |+++++ +++ ++
T Consensus 70 ~~~~-~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l------~~ 122 (353)
T 2yrr_A 70 ANLD-R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPV---------------DPEAVA--RAL------KR 122 (353)
T ss_dssp HTCS-C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCC---------------CHHHHH--HHH------HH
T ss_pred HHhc-C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCC---------------CHHHHH--HHH------Hh
Confidence 9883 4 7888888888887 566667778999999998765555 577887 444 23
Q ss_pred -CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccC
Q 010538 201 -AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGY 279 (508)
Q Consensus 201 -~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~ 279 (508)
++++|++++++||||.++|+++|.++|++ +|+++|+|++|++|..++++..+++|++++|+||++++
T Consensus 123 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~ 190 (353)
T 2yrr_A 123 RRYRMVALVHGETSTGVLNPAEAIGALAKE------------AGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSA 190 (353)
T ss_dssp SCCSEEEEESEETTTTEECCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCC
T ss_pred CCCCEEEEEccCCCcceecCHHHHHHHHHH------------cCCeEEEEcCcccccccccccccCceEEEecCcccccC
Confidence 67999999999999999999999999998 89999999999988888777666789999999997665
Q ss_pred CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 280 PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 280 P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
|.|+|+++++++.++.++. ..++.. ....+.. ........++++...++++.++++++.+.|++++.++++
T Consensus 191 ~~g~G~~~~~~~~~~~l~~-~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 261 (353)
T 2yrr_A 191 PPGLAPIAASLEARKAFTG-KRGWYL-----DLARVAE---HWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAR 261 (353)
T ss_dssp CSSCEEEEECHHHHHHCCC-CSCSTT-----CHHHHHH---HHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEECHHHHHHhcc-CCCccc-----cHHHHhh---hhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8899999999998877652 111100 0000000 001234567889888899989999887778999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC 439 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~ 439 (508)
++++++.+.|+++ +++++.+.. +.+.+++|.++.. .+..++.+.|.++||.+++|..|.
T Consensus 262 ~~~~~l~~~L~~~-------g~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~---- 320 (353)
T 2yrr_A 262 EVYAWVLEELKAR-------GFRPYPKAS------PLPTVLVVRPPEG----VDADRLVRALYAEGVAVAGGIGPT---- 320 (353)
T ss_dssp HHHHHHHHHHHHT-------TCEESCSSS------BCTTEEEEECCTT----CCHHHHHHHHHHTTEECEECCGGG----
T ss_pred HHHHHHHHHHHHC-------CCccccCcc------CCCeEEEEECCCC----CCHHHHHHHHHHCCEEEeCCcccc----
Confidence 9999999999886 577776431 1267778888531 344568889988999999876321
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH-HHHHhhhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK-VNRCSSFDFVNF 501 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~-~l~~~~~~~~~~ 501 (508)
.++.+|+|++.++|.+|++ +++++|+++++.
T Consensus 321 -------------------------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 321 -------------------------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp -------------------------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred -------------------------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1578999999999999999 999999987753
No 24
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.3e-34 Score=297.11 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=281.1
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
.|+.+.+...++.+.+...+++.+++++.+... . ..........+++++++++++|++.++ .+++|+|+
T Consensus 5 ~~~~~~~~~~~~~~pgp~~~~~~v~~a~~~~~~----~------~~~~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~sg 73 (411)
T 3nnk_A 5 QFSQLNPPSRLLMGPGPINADPRVLRAMSSQLI----G------QYDPAMTHYMNEVMALYRGVFRTENRW-TMLVDGTS 73 (411)
T ss_dssp SSCSCCCCCCEEESSSCCCCCHHHHHHHTSCCC----C------TTCHHHHHHHHHHHHHHHHHHTCCCSE-EEEEESCH
T ss_pred cccccCCccceeecCCCCCCCHHHHHHhhcccc----c------cccHHHHHHHHHHHHHHHHHhCCCCCc-EEEECCCc
Confidence 455555666788888888889988877643211 1 112234567889999999999998761 38899999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
|+|+++++.++ .++|++|+++...|++.. +...++..|.+++.+|.+.++.+ |+++++ +++
T Consensus 74 t~al~~~~~~~-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 134 (411)
T 3nnk_A 74 RAGIEAILVSA-IRPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVF---------------TPDQVE--DAV 134 (411)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCC---------------CHHHHH--HHH
T ss_pred HHHHHHHHHHh-cCCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 788999999987776532 44556678999999999766655 578887 554
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
.+ +++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..++++...++|++++|
T Consensus 135 ~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s 197 (411)
T 3nnk_A 135 KR-----IRPRLLLTVQGDTSTTMLQPLAELGEICRR------------YDALFYTDATASLGGNPLETDVWGLDAVSAG 197 (411)
T ss_dssp HH-----HCCSEEEEESEETTTTEECCCTTHHHHHHH------------HTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred hh-----CCCeEEEEeCCCCCcceeccHHHHHHHHHH------------cCCEEEEECCcccCCcccchhccCCcEEEec
Confidence 21 278999999999999999999999999998 8999999999999999999998899999999
Q ss_pred ccccccCCCcceEEEEechhHhhhccc------cccCceEEe----cc-cc---hhhhhhccCccccccCCCCChhHHHH
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNT------YFSGGTVAA----SI-AD---IDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~------~~g~~~~~~----~~-~~---~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
+||++++|.|+|+++++++.++.+.+. +.|++.... .. .. ..+... ....++..++++...+++
T Consensus 198 ~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a 275 (411)
T 3nnk_A 198 MQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDY--WGPERLNHHTEATTALFG 275 (411)
T ss_dssp STTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHH--HSTTCCCCSCCCHHHHHH
T ss_pred CccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhh--hccccCCCCCCCHHHHHH
Confidence 999755588999999999988766543 222221000 00 00 000000 013456778999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
+.++++.+.+.|++++.+++.++++++.+.|+++ +++++.+... ..+++++|.+++. .+..++.
T Consensus 276 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~l~ 339 (411)
T 3nnk_A 276 ARECARLILQEGLDYGIARHKLHGDALVKGIQAM-------GLETFGDLKH-----KMNNVLGVVIPQG----INGDQAR 339 (411)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBCSCGGG-----BCSSEEEEECCTT----CCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCEeCCCccc-----ccccEEEEECCCC----CCHHHHH
Confidence 9999998888889999999999999999999986 5766655432 2378899988632 2345678
Q ss_pred HHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhh
Q 010538 419 KLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 419 ~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~ 496 (508)
+.|.++ ||.+++|.. + ..++++|+++ ++.+|++|++++++.|+
T Consensus 340 ~~l~~~~gi~v~~g~~---~--------------------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~ 384 (411)
T 3nnk_A 340 KLMLEDFGIEIGTSFG---P--------------------------------LHGKVWRIGTMGYNARKDCVMTTLSALE 384 (411)
T ss_dssp HHHHHHHSEEEEECCG---G--------------------------------GTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHhcCeEEeCccC---C--------------------------------CCCCEEEEeCccCcCCHHHHHHHHHHHH
Confidence 877665 999998731 1 1257999998 66679999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++.+
T Consensus 385 ~~l~~~ 390 (411)
T 3nnk_A 385 AVLNYL 390 (411)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 987654
No 25
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=100.00 E-value=2.5e-33 Score=286.40 Aligned_cols=348 Identities=15% Similarity=0.123 Sum_probs=252.4
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC---ccchhhhhhHHHHHHHHHHHHHcCCCCCCce-EEEcCChHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS---QSDISLATCDIVRAAREQVLDYFNASMKDYK-CIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~-i~~t~g~t~ 114 (508)
.+.+|+++++.+++|+.+++++.+.+ .++.+++.+ ....+....+..+++++.+++++|++++ ++ +++|+|+|+
T Consensus 2 ~~~~~l~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~i~~t~g~t~ 79 (362)
T 2c0r_A 2 SERAYNFNAGPAALPLEVLERAQAEF-VDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG-YKVLFIQGGAST 79 (362)
T ss_dssp CCCCEECCSSSCCCCHHHHHHHHHTS-SSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS-EEEEEESSHHHH
T ss_pred CcceeeccCCCCCCCHHHHHHHHHHH-hhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCC-cEEEEECCCchH
Confidence 35789999999999999999886644 232222111 1112334567788999999999999763 14 578899999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC---ccCccccccccccccccccchhhhhcCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE---AVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~---~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
|+++++.++ .++|++|++....|.+. .+...++..| +++.++.+. .+... |.++++
T Consensus 80 a~~~~~~~l-~~~gd~vl~~~~~~~~~-~~~~~~~~~g-~~~~v~~~~~~~~~~~~--------------~~~~~~---- 138 (362)
T 2c0r_A 80 QFAMIPMNF-LKEGQTANYVMTGSWAS-KALKEAKLIG-DTHVAASSEASNYMTLP--------------KLQEIQ---- 138 (362)
T ss_dssp HHHHHHHHH-CCTTCEEEEEECSHHHH-HHHHHHHHHS-CEEEEEECGGGTTCSCC--------------CGGGCC----
T ss_pred HHHHHHHhc-CCCCCeEEEEecCcHhH-HHHHHHHHhC-CeEEEecccccccccCC--------------CHHHcc----
Confidence 999999998 57888888765443332 2345556678 999998762 11110 122211
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEE
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVV 270 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~ 270 (508)
++++|++|++++++|+||.+ .|+++| +|+++++|++|+.|..++++.+. |+++
T Consensus 139 ------i~~~t~~v~~~~~~n~tG~~~~~l~~i------------------~~~~vivD~a~~~~~~~~~~~~~--d~~~ 192 (362)
T 2c0r_A 139 ------LQDNAAYLHLTSNETIEGAQFKAFPDT------------------GSVPLIGDMSSDILSRPFDLNQF--GLVY 192 (362)
T ss_dssp ------CCTTEEEEEEESEETTTTEECSSCCCC------------------TTSCEEEECTTTTTSSCCCGGGC--SEEE
T ss_pred ------cCCCcCEEEEeCCcCccceeccccccc------------------CCCEEEEEChhhccCCccchhHC--cEEE
Confidence 25689999999999999997 455443 49999999999999998887654 9999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL- 349 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~- 349 (508)
+|+||++| |.|+|++++++++++.+.+..... .++... .......+|++...++++.++++++.+.
T Consensus 193 ~s~~K~~g-~~G~G~l~~~~~~~~~l~~~~~~~---------~~~~~~---~~~~~~~~t~~~~~~~a~~~al~~~~~~~ 259 (362)
T 2c0r_A 193 AGAQKNLG-PSGVTVVIVREDLVAESPKHLPTM---------LRYDTY---VKNNSLYNTPPSFGIYMVNEVLKWIEERG 259 (362)
T ss_dssp EETTTTTC-CSSCEEEEEEGGGSSSCCTTSCGG---------GCHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred Eecccccc-CcCcEEEEEcHHHHhhccccCchH---------HhHHHH---hhccCcCCCchHHHHHHHHHHHHHHHHhC
Confidence 99999998 989999999999876665421100 000000 0122345789999999999999988776
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
+++.+.++++++++++.+.|+++. ++ ++..++.. +..++++|.+++. .+..++.+.|.++||.+
T Consensus 260 ~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~~ 324 (362)
T 2c0r_A 260 GLEGVQQANRKKASLIYDAIDQSG------GFYRGCVDVDS-----RSDMNITFRLASE----ELEKEFVKASEQEGFVG 324 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTST------TSSEESSCGGG-----BCSSEEEEECSCH----HHHHHHHHHHHHTTEES
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC------CccccCCChHH-----cCCcEEEEEcCCc----chHHHHHHHHHHCCCee
Confidence 689999999999999999999872 25 66543221 2367888887531 23346888999999988
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+|..+ .+.+|||++.++|.+|++++++.|+++++
T Consensus 325 ~~g~~~-------------------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 325 LKGHRS-------------------------------------VGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp CBCCTT-------------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCC-------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 776422 35699999999999999999999998765
No 26
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=100.00 E-value=1.4e-33 Score=291.16 Aligned_cols=368 Identities=11% Similarity=0.031 Sum_probs=275.0
Q ss_pred hhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 33 EFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 33 ~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
.||.+.++.+|+.+.+..++++.+++++.+.. . + .+ ........+++++.+++++|++++. +|++|+|+
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~v~~a~~~~~-~----~---~~--~~~~~~~~~~l~~~la~~~~~~~~~-~v~~~~g~ 78 (396)
T 2ch1_A 10 LRNPLIIPEKIMMGPGPSNCSKRVLTAMTNTV-L----S---NF--HAELFRTMDEVKDGLRYIFQTENRA-TMCVSGSA 78 (396)
T ss_dssp GSSCCCCCCCBCCSSSSCCCCHHHHHHTTSCC-C----C---TT--CHHHHHHHHHHHHHHHHHHTCCCSC-EEEESSCH
T ss_pred cCCCCCCCcceeecCCCCCCCHHHHHHhcccc-c----c---CC--ChhHHHHHHHHHHHHHHHhCCCCCc-EEEECCcH
Confidence 68888777888888888888888877653321 1 1 11 1223356788999999999997652 69999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
|+|+.+++.++ .++|++|+++...|+++. +...++..|++++.+|.+.++.+ |+++++ +++
T Consensus 79 t~al~~~~~~~-~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l 139 (396)
T 2ch1_A 79 HAGMEAMLSNL-LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPF---------------SLETLA--RAI 139 (396)
T ss_dssp HHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCC---------------CHHHHH--HHH
T ss_pred HHHHHHHHHHh-cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCC---------------CHHHHH--HHH
Confidence 99999999998 678999999998898863 44556778999999998765445 678887 444
Q ss_pred CCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEE
Q 010538 193 PERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVM 271 (508)
Q Consensus 193 ~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~ 271 (508)
++ ++++|++++++||||.++|+++|.++|++ +|+++|+|++|++|..++++..+++|+++.
T Consensus 140 ------~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~~~~d~~~~ 201 (396)
T 2ch1_A 140 ------ELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQ------------HDCLLIVDAVASLCGVPFYMDKWEIDAVYT 201 (396)
T ss_dssp ------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTBTTBCCCTTTTTCCEEEC
T ss_pred ------HhCCCCEEEEECCCCCCceecCHHHHHHHHHH------------cCCEEEEEccccccCCccchhhcCcCEEEE
Confidence 23 67999999999999999999999999998 899999999999999999888888999999
Q ss_pred eccccccCCCcceEEEEechhHhhhcccc--ccCceEEecccchhhhhhc-cCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 272 SFYKIFGYPTGLGALIMRNDAAKLLKNTY--FSGGTVAASIADIDFVKRR-QGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 272 S~~K~~g~P~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
|+||++++|.|+|+++++++.++.+...- .+.. ..+...+.... .....++..++++...++++.++++.+.+
T Consensus 202 s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 277 (396)
T 2ch1_A 202 GAQKVLGAPPGITPISISPKALDVIRNRRTKSKVF----YWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAE 277 (396)
T ss_dssp CCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCG----GGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCccccCCCCeEEEEECHHHHHhhhhccCcccce----EechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 99997776889999999998877664320 0000 00000000000 01123456688898888888889998766
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCe
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQ 427 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~ 427 (508)
.+++++.++++++++++.+.|+++ +++++.+... ...+.+++|.++.. .+..++.+.|.+ +||.
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gi~ 342 (396)
T 2ch1_A 278 EGLENQIKRRIECAQILYEGLGKM-------GLDIFVKDPR----HRLPTVTGIMIPKG----VDWWKVSQYAMNNFSLE 342 (396)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHH-------TCCBSSCSGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC-------CCeeccCCcc----ccCCceEEEEcCCC----CCHHHHHHHHHHhCCEE
Confidence 689999999999999999999886 4666655421 01245888888531 234567777765 5999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCCCHHHHHHHHHhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++|..|. .++++||+++ +.+|.+|+++++++|+++++-+
T Consensus 343 v~~g~~~~-----------------------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 343 VQGGLGPT-----------------------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp CBCCCGGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred EecCcccc-----------------------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 98875221 2578999995 5568999999999999887644
No 27
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=100.00 E-value=1.2e-33 Score=293.41 Aligned_cols=330 Identities=11% Similarity=0.061 Sum_probs=258.7
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEE-EcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCI-FTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~-~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
..+..+++++++++++|++++ .++ +++|+|+|+.+++.++ .++|++|+++...|++.. +...++..|++++.+|.
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~--~~~~~~~s~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 42 FTGIMNETMEMLRELFQTKNR--WAYPIDGTSRAGIEAVLASV-IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEEEESCHHHHHHHHHHHH-CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCC--cEEEecCcHHHHHHHHHHHh-cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEec
Confidence 467788999999999999877 665 8899999999999998 788999999988777632 45566778999999999
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+.++.+ |+++++ +++. .+++++|++++++||||.+.|+++|.++|++
T Consensus 118 ~~~~~~---------------d~~~l~--~~i~-----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~----------- 164 (416)
T 3isl_A 118 EWGTVF---------------DPEDII--REIK-----KVKPKIVAMVHGETSTGRIHPLKAIGEACRT----------- 164 (416)
T ss_dssp CTTCCC---------------CHHHHH--HHHH-----HHCCSEEEEESEETTTTEECCCHHHHHHHHH-----------
T ss_pred CCCCCC---------------CHHHHH--HHHh-----hCCCcEEEEEccCCCCceecCHHHHHHHHHH-----------
Confidence 876655 678887 5442 1468999999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc---ccCceE-----------
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY---FSGGTV----------- 306 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~---~g~~~~----------- 306 (508)
+|+++|+|++|+.|..++++...++|++++|+||++++|.|+|+++++++.++.+.+.. .||...
T Consensus 165 -~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~ 243 (416)
T 3isl_A 165 -EDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRP 243 (416)
T ss_dssp -TTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCC
T ss_pred -cCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCC
Confidence 99999999999999999999988999999999997555889999999999988776532 222110
Q ss_pred -E-ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 307 -A-ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 307 -~-~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
. .......+.. .....++..++++...++++.++++.+.+.|++++.+++.++++++.+.|++. +++++
T Consensus 244 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~ 314 (416)
T 3isl_A 244 ITSNYFDLSQLED--YWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-------GLRLF 314 (416)
T ss_dssp CSCSTTCHHHHHH--HTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBC
T ss_pred CCccccchHHHHh--hhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCEec
Confidence 0 0000011110 01245667889999999999999999888889999999999999999999985 57777
Q ss_pred cCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCC
Q 010538 385 GTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDD 463 (508)
Q Consensus 385 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 463 (508)
.+... ..+++++|.+++. .+..++.+.|.++ ||.+++|...
T Consensus 315 ~~~~~-----~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~~----------------------------- 356 (416)
T 3isl_A 315 GDDSC-----KMPVVTCVEIPGG----IDGESVRDMLLAQFGIEIASSFGP----------------------------- 356 (416)
T ss_dssp SCGGG-----BCTTEEEEECCTT----CCHHHHHHHHHHHHCEECBCCCST-----------------------------
T ss_pred cCccc-----cCCcEEEEeCCCC----CCHHHHHHHHHHhCCEEEecCCCC-----------------------------
Confidence 65432 2368888988632 2345688888766 9999987521
Q ss_pred ccccCCCCCceEEEecCCCCCHHH-HHHHHHhhhhhhhhh
Q 010538 464 NDIIHGKPTGAIRVSFGYMSTFED-AKVNRCSSFDFVNFS 502 (508)
Q Consensus 464 ~~~~~~~~~~~iRis~~~~~t~ee-v~~l~~~~~~~~~~~ 502 (508)
..++++|++++.++|.+| ++++++.|+++++.+
T Consensus 357 ------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 357 ------LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp ------TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred ------CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 126789999988888877 999999999987653
No 28
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=100.00 E-value=5.7e-33 Score=284.57 Aligned_cols=352 Identities=11% Similarity=0.052 Sum_probs=260.8
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
..|+-+.+..++++.+++++.+... .+ .+.......+++++++++++|++.+...+++|+|+|+|+++++
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~------~~----~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~ 88 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVP------YF----RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVV 88 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCC------CC----SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCC------CC----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHH
Confidence 3344456667779888887644221 11 1223456788999999999999753213455899999999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGD 200 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~ 200 (508)
.++ .++|++|++....+.+. .+...+...|++++.++.+....+ |+++++ +++ ++
T Consensus 89 ~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~~------~~ 143 (376)
T 3f0h_A 89 MNC-FTKKDKVLVIDGGSFGH-RFVQLCEIHEIPYVALKLEHGKKL---------------TKEKLY--EYD------NQ 143 (376)
T ss_dssp HHH-CCTTCCEEEEESSHHHH-HHHHHHHHTTCCEEEEECCTTCCC---------------CHHHHH--TTT------TS
T ss_pred Hhc-cCCCCeEEEEeCChhhH-HHHHHHHHcCCceEEEeCCCCCCC---------------CHHHHH--Hhh------cc
Confidence 998 67888888886544442 344556678999999998765555 688898 543 56
Q ss_pred CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCC
Q 010538 201 AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYP 280 (508)
Q Consensus 201 ~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P 280 (508)
++++|++++++|+||.++|+++|.++|++ +|+++|+|++|+.+..++++..+++|++++|+||++++|
T Consensus 144 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~ 211 (376)
T 3f0h_A 144 NFTGLLVNVDETSTAVLYDTMMIGEFCKK------------NNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACP 211 (376)
T ss_dssp CCCEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCC
T ss_pred CceEEEEecccCCcceecCHHHHHHHHHH------------cCCEEEEEcCccccCccccccccCccEEEecCcccccCC
Confidence 88999999999999999999999999998 999999999999999888887778999999999999878
Q ss_pred CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-ChHHHHHHHH
Q 010538 281 TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL-TVPAICRHIA 359 (508)
Q Consensus 281 ~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~-g~~~i~~~~~ 359 (508)
.|+|+++++++.++.+.+...++.. .....+.. .........+++...++++.++++++.+. +++.+.++..
T Consensus 212 ~G~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 284 (376)
T 3f0h_A 212 PGISVIVLAPRGVERVEKSKVRTMY----FDLKDALK---NQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIA 284 (376)
T ss_dssp SSCEEEEECHHHHHHHHTCCCCCST----TCHHHHHH---HHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CceEEEEECHHHHHHhhcCCCCcee----ecHHHHHh---hcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8999999999988777653221100 00000000 00112224466666678888999988887 6899999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCeeccCCCCCchH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQLRTGCFCNPGA 438 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~ 438 (508)
++++++.+.|+++ ++++..+.. ...++.+...+ .+..++.+.|.++ ||.+++|.. .
T Consensus 285 ~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~l~~~~gi~v~~g~~---~- 341 (376)
T 3f0h_A 285 SQAADFRAKIKDL-------PFELVSESP-------ANGVTSVHPTT-----ANAYDIFLKLKDEYGIWICPNGG---E- 341 (376)
T ss_dssp HHHHHHHHHTTTS-------SEEECCSSB-------BTTEEEEEESS-----SCHHHHHHHHHHHSSEECEECCG---G-
T ss_pred HHHHHHHHHHHHc-------CCccCcccc-------CceEEEEeCCC-----CCHHHHHHHHHHhCCEEEecCcc---c-
Confidence 9999999999887 577765432 14555555433 2345688888877 999998721 1
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..++++|+|++.++|.+|+++++++|+++++
T Consensus 342 -------------------------------~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~ 372 (376)
T 3f0h_A 342 -------------------------------MKDTIFRVGHIGALTHEDNTTLVNAFKDLQK 372 (376)
T ss_dssp -------------------------------GTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 1257899999999999999999999998775
No 29
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=100.00 E-value=3.3e-33 Score=287.37 Aligned_cols=371 Identities=12% Similarity=0.082 Sum_probs=276.2
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
++. .++. +..++.+.+...+++.+++++.+... + + ..........+++++++++++.+..+ +|++
T Consensus 15 ~~~-~~~~---~~~~~~~p~p~~~~~~v~~a~~~~~~-----~-~----~~~~~~~~~~~l~~~la~~~~~~~~~-~v~~ 79 (393)
T 3kgw_A 15 LSK-PLSV---PTRLLLGPGPSNLAPRVLAAGSLRMI-----G-H----MQKEMLQIMEEIKQGIQYVFQTRNPL-TLVV 79 (393)
T ss_dssp GGS-CCCC---CCCEECSSSCCCCCHHHHHHTTCCCC-----C-T----TSHHHHHHHHHHHHHHHHHHTCCCSE-EEEE
T ss_pred hcc-CCCC---ccceeccCCCCCCCHHHHHHhccccc-----C-c----ccHHHHHHHHHHHHHHHHHhCCCCCc-EEEE
Confidence 444 5553 34477777777788888877633211 1 1 11223567788999999999997651 5999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+++|+.+++.++ .++|++|+++...|.+. .+...++..|.+++.+|.+.++.+ |+++++
T Consensus 80 ~~gg~~al~~~~~~~-~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~- 141 (393)
T 3kgw_A 80 SGSGHCAMETALFNL-LEPGDSFLTGTNGIWGM-RAAEIADRIGARVHQMIKKPGEHY---------------TLQEVE- 141 (393)
T ss_dssp SCCTTTHHHHHHHHH-CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCC---------------CHHHHH-
T ss_pred eCCcHHHHHHHHHhc-CCCCCEEEEEeCCchhH-HHHHHHHHcCCceEEEeCCCCCCC---------------CHHHHH-
Confidence 999999999999998 78899999886555322 245566778999999998766555 678888
Q ss_pred CCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCc
Q 010538 189 GASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVD 267 (508)
Q Consensus 189 ~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D 267 (508)
+++ .+ ++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|..++++...++|
T Consensus 142 -~~i------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~g~~~~~~~~~~~d 202 (393)
T 3kgw_A 142 -EGL------AQHKPVLLFLVHGESSTGVVQPLDGFGELCHR------------YQCLLLVDSVASLGGVPIYMDQQGID 202 (393)
T ss_dssp -HHH------HHHCCSEEEEESEETTTTEECCCTTHHHHHHH------------TTCEEEEECTTTTTTSCCCTTTTTCC
T ss_pred -HHH------hhCCCcEEEEeccCCcchhhccHHHHHHHHHH------------cCCEEEEECCccccCcccchhhcCCC
Confidence 554 33 78999999999999999999999999998 99999999999999999998888999
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhc-cCccccccCCCCChhHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR-QGVEELFEDGTASFLSIASIRHGFNLI 346 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~l~~al~~~ 346 (508)
++++|+||++++|.|+|+++++++.++.+.+...++.. +..+...+.... .....++..++++...++++.++++++
T Consensus 203 ~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 280 (393)
T 3kgw_A 203 IMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVS--FYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI 280 (393)
T ss_dssp EEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSC--STTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCc--eeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999776588999999999998877654322211 000000000000 012335667899999999999999988
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-C
Q 010538 347 NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-G 425 (508)
Q Consensus 347 ~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-g 425 (508)
.+.+++++.+++.++++++.+.|+++ +++++.+... ...+.+++|.+++. .+..++.+.|.++ |
T Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g 345 (393)
T 3kgw_A 281 AEQGLENCWRRHREATAHLHKHLQEM-------GLKFFVKDPE----IRLPTITTVTVPAG----YNWRDIVSYVLDHFS 345 (393)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSSSGG----GBCSSEEEEECCTT----BCHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHc-------CCeeccCChh----hcCCeEEEEeCCCC----CCHHHHHHHHHHhCC
Confidence 88889999999999999999999987 4666543321 12356777887542 3445688888776 9
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|.+++|..+. .++++|+++ ++.+|.+|++++++.|+++++.++
T Consensus 346 i~v~~g~~~~-----------------------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 346 IEISGGLGPT-----------------------------------EERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp EECBCCCGGG-----------------------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCcccC-----------------------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999875321 257899999 555699999999999999887654
No 30
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=100.00 E-value=1.9e-33 Score=287.35 Aligned_cols=352 Identities=14% Similarity=0.057 Sum_probs=259.6
Q ss_pred CCCeeeeC-CCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHH-HHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDH-AGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQ-VLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~-la~~~~~~~~~~~i~~t~g~t~a 115 (508)
++.+|||+ .+.+++++.+.+++.+.. ......... .+..++......++++++ +++++|.+ +|++|+|+|+|
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~----~v~~~~g~t~a 81 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWG-DGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD----VARVTNGAREA 81 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS----EEEEESSHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHH-hhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC----EEEEeCChHHH
Confidence 67999999 557788888888875533 221100000 111222234557889999 99999987 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc--cCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID--VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~--~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ .++|++|+++...|+++... ++..|++++.+| .+.+..+ |+++++ ++++
T Consensus 82 ~~~~~~~~-~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l~ 140 (371)
T 2e7j_A 82 KFAVMHSL-AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAI---------------TPENFA--QTIE 140 (371)
T ss_dssp HHHHHHHH-CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCC---------------CHHHHH--HHHH
T ss_pred HHHHHHHH-hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCc---------------CHHHHH--HHHH
Confidence 99999998 68899999999888877655 455799999999 7655444 577777 5542
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEec
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSF 273 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~ 273 (508)
+... .+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++..+++|++++|+
T Consensus 141 ~~~~-~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~ 207 (371)
T 2e7j_A 141 ETKK-RGEVVLALITYPDGNYGNLPDVKKIAKVCSE------------YDVPLLVNGAYAIGRMPVSLKEIGADFIVGSG 207 (371)
T ss_dssp HHTT-TSCEEEEEEESSCTTTCCCCCHHHHHHHHHT------------TTCCEEEECTTTBTTBCCCHHHHTCSEEEEEH
T ss_pred hhcc-cCCeEEEEEECCCCCCcccCCHHHHHHHHHH------------cCCeEEEECccccCCCCCChhhcCCCEEEecC
Confidence 1100 1578999999999999999999999999998 99999999999999888777767899999999
Q ss_pred cccccCCCcceEEEEechhHhh-hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKL-LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
||++++|.|+|+++++++.++. +.+...++.. ...++.++++..+++++.++++++.+
T Consensus 208 sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~~~---- 266 (371)
T 2e7j_A 208 HKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNK-----------------EVELLGCTARGATIITLMASFPHVRE---- 266 (371)
T ss_dssp HHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTS-----------------BGGGTTCCCCSHHHHHHHHHHHHHHH----
T ss_pred CcCCCCCCCcEEEEEechhhhhhccccccCccc-----------------ccccccCCcCHHHHHHHHHHHHHHHH----
Confidence 9987767789999999988776 6655332111 12244688888888888889888754
Q ss_pred HHHHHH--HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 353 AICRHI--ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 353 ~i~~~~--~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
.+.+++ +++++++.+.|+++ +++++.+... .++++++.++ + ..++.+.|.++||.+++
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~~------~~~~~~~~~~--~-----~~~~~~~l~~~gi~~~~ 326 (371)
T 2e7j_A 267 RIKRWDEEVEKARRFAAEMEKL-------GIKQLGDNPH------NHDLMFFHAE--V-----LYEISKKAKGGRFFLYR 326 (371)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHT-------TCEEESSSSC------CSSEEEEECH--H-----HHHHHHHSSSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------CcEEecCCCc------cCceEEEECC--C-----HHHHHHHHHHCCEEEEe
Confidence 667788 89999999999886 5777765421 2678999886 1 23578888889999865
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE-EecCCC-CCHHHHHHHHHhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR-VSFGYM-STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR-is~~~~-~t~eev~~l~~~~~~~~~ 500 (508)
..+ .+ . ..+..++.+| ++++.+ +|.+|++++++.|+++++
T Consensus 327 -~~~-------~~-----------~-----------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 327 -ELK-------SR-----------K-----------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp -HHH-------HT-----------T-----------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred -ccc-------cc-----------c-----------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 110 00 0 0001257899 999998 999999999999998765
No 31
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=100.00 E-value=3.8e-32 Score=276.77 Aligned_cols=344 Identities=12% Similarity=0.128 Sum_probs=253.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCc-cch---hhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCCh-HH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQ-SDI---SLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSGA-TA 114 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g~-t~ 114 (508)
.+|+++.+..++|+.+++++.+.+ ... .+++.. +.. +.......+++++++++++|++ ++ +|++|+|+ |+
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--~v~~~~g~gt~ 78 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKEL-LNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDY--QILFLQGGASL 78 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTS-SSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE--EEEEESSHHHH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHh-hhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc--eEEEECCcchH
Confidence 467888888888999998876643 332 444422 212 3445677889999999999997 45 89999999 99
Q ss_pred HHHHHHhhcCCC--CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCC-
Q 010538 115 ALKLVGEAFPWS--HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGA- 190 (508)
Q Consensus 115 al~~~~~~l~~~--~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~- 190 (508)
|+.+++.++..+ ++++|+++...|++. ..++..| +++.+|++. ++.+ |+++++ +
T Consensus 79 al~~~~~~l~~~~~~g~~vi~~~~~~~~~----~~~~~~g-~~~~v~~~~~~~~~---------------d~~~l~--~~ 136 (360)
T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKAL----KEAKLLG-ETHIAASTKANSYQ---------------SIPDFS--EF 136 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHH----HHHHTTS-EEEEEEECGGGTSC---------------SCCCGG--GC
T ss_pred HHHHHHHHhcCCCCcccEEEecchhHHHH----HHHHHhC-CeEEeecccccCcC---------------CccchH--hh
Confidence 999998888442 356777777666542 3345679 999999874 4434 456677 4
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEE
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVV 270 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~ 270 (508)
++ +++|++|++++++||||.++| + ++++ +|+++|+|++|+.+..++++..+ |+++
T Consensus 137 ~i------~~~~k~v~~~~~~nptG~~~~--~---i~~~------------~~~~li~D~a~~~~~~~~~~~~~--di~~ 191 (360)
T 1w23_A 137 QL------NENDAYLHITSNNTIYGTQYQ--N---FPEI------------NHAPLIADMSSDILSRPLKVNQF--GMIY 191 (360)
T ss_dssp CC------CTTEEEEEEESEETTTTEECS--S---CCCC------------CSSCEEEECTTTTTSSCCCGGGC--SEEE
T ss_pred cc------CCCCCEEEEeCCCCCcceecc--c---cccc------------CCceEEEechhhcCCCCcCcccC--CEEE
Confidence 43 568999999999999999988 2 2234 89999999999999988877654 8999
Q ss_pred EeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc-
Q 010538 271 MSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL- 349 (508)
Q Consensus 271 ~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~- 349 (508)
+|+||++| |.|+|+++++++.++.+.+.. ++.. .+... ...++..++++...++++.++++++.+.
T Consensus 192 ~s~sK~~~-~~G~G~~~~~~~~~~~~~~~~-~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 258 (360)
T 1w23_A 192 AGAQKNLG-PSGVTVVIVKKDLLNTKVEQV-PTML--------QYATH---IKSDSLYNTPPTFSIYMLRNVLDWIKDLG 258 (360)
T ss_dssp EETTTTTS-CTTCEEEEEEHHHHCSCCTTC-CGGG--------CHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred EEcccccC-CCCcEEEEEcHHHHhhcccCC-cchh--------hhhhh---hhccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999998 889999999999877666542 1110 00000 0123456789999999999999987766
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
+++.+.++++++++++.+.|++++ ++ ....++.. +.+.+++|.+++. .+..++.+.|.++||.+
T Consensus 259 ~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~ 323 (360)
T 1w23_A 259 GAEAIAKQNEEKAKIIYDTIDESN------GFYVGHAEKGS-----RSLMNVTFNLRNE----ELNQQFLAKAKEQGFVG 323 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT------TSSEESSCGGG-----BCSSEEEEECSSH----HHHHHHHHHHHHTTEES
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcc------CcccccCCchh-----ccCcEEEEEcCCC----ccHHHHHHHHHHCCeee
Confidence 689999999999999999999873 33 44321111 1144899988642 12235777788899998
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++|.. ..+++|+|++.++|.+|+++++++|+++++
T Consensus 324 ~~~~~-------------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 324 LNGHR-------------------------------------SVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp CBCCT-------------------------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ecCCC-------------------------------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 77642 146799999999999999999999998764
No 32
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=9.2e-32 Score=276.04 Aligned_cols=355 Identities=13% Similarity=0.067 Sum_probs=254.8
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC----CCCceEEEcCChHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS----MKDYKCIFTSGATAALK 117 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~----~~~~~i~~t~g~t~al~ 117 (508)
.++...+...+++.+++++.+.. . + + . .........+++++++++++.. ++ +|++|+|+|+|+.
T Consensus 6 ~~~~~p~p~~~~~~v~~a~~~~~-~----~-~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~v~~~~g~t~al~ 73 (385)
T 2bkw_A 6 DTLLIPGPIILSGAVQKALDVPS-L----G-H-T---SPEFVSIFQRVLKNTRAVFKSAAASKSQ--PFVLAGSGTLGWD 73 (385)
T ss_dssp CEECSSSSCCCCHHHHHTTSCCC-C----C-T-T---SHHHHHHHHHHHHHHHHHTTCCGGGTCE--EEEEESCTTHHHH
T ss_pred ceeecCCCcCchHHHHHHHhccc-c----c-c-C---CHHHHHHHHHHHHHHHHHhCCCCCCCCc--eEEEcCchHHHHH
Confidence 35555666667888776653211 1 1 1 1 1122345666788888888763 56 8999999999999
Q ss_pred HHHhhcCC--CCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 118 LVGEAFPW--SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 118 ~~~~~l~~--~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++.++.. ++|++|++....+.... +...++..|++++.+|. +.++.+ |+++++ +++.+
T Consensus 74 ~~~~~~~~~~~~gd~vlv~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l~~ 135 (385)
T 2bkw_A 74 IFASNFILSKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVRPLKIGESV---------------PLELIT--EKLSQ 135 (385)
T ss_dssp HHHHHHSCTTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEECCSSTTSCC---------------CHHHHH--HHHHH
T ss_pred HHHHHHhccCCCCCeEEEEcCCcchHH-HHHHHHHcCCceEEEecCCCCCCC---------------CHHHHH--HHHhc
Confidence 99999842 67888877643222111 12455667999999998 655555 577887 54421
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCCCCCCCCCCCCcEEEEe
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVTQPPDLSKYPVDFVVMS 272 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~~~~d~~~~~~D~~~~S 272 (508)
+++++|++++++|+||.++|+++|.++|++ + |+++|+|++|+.|..++++..+++|++++|
T Consensus 136 -----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~------------~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 198 (385)
T 2bkw_A 136 -----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQ------------TSPETFFVVDAVCSIGCEEFEFDEWGVDFALTA 198 (385)
T ss_dssp -----SCCSEEEEESEETTTTEECCHHHHHHHHHH------------HCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEE
T ss_pred -----CCCCEEEEEccCCCcCeEcCHHHHHHHHHh------------hCCCCEEEEECccccCCccccccccCceEEEec
Confidence 268999999999999999999999999997 8 999999999999998888888889999999
Q ss_pred ccccccCCCcceEEEEechhHh-hhccc----cccCceEEecccchhhhhh---ccCccccccCCCCChhHHHHHHHHHH
Q 010538 273 FYKIFGYPTGLGALIMRNDAAK-LLKNT----YFSGGTVAASIADIDFVKR---RQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~-~l~~~----~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
+||++++|.|+|+++++++.++ .+++. ..+++. +...+... ... ......++++...++++.++++
T Consensus 199 ~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al~ 272 (385)
T 2bkw_A 199 SQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFS-----SLRRWTPIMENYEA-GKGAYFATPPVQLINSLDVALK 272 (385)
T ss_dssp SSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTT-----CHHHHHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHH
T ss_pred CccccccCCcceEEEEcHHHHHHHHhhccCCCCCceee-----cHHHHhhHHHhhhc-cCCCCCCCCCHHHHHHHHHHHH
Confidence 9997766889999999998876 55321 011110 00001000 000 1112246889999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHH-hcccCCCCCceEEEecCCCCCcccC-CCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVL-LSLRHENGADVCTIYGTYTSEVSYH-DTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L-~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+.|++.+.++++++++++.+.| +++ +++++.+... . ..+++++|.+++ ..++.+.|.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------g~~~~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~l~ 334 (385)
T 2bkw_A 273 EILEEGLHKRWDLHREMSDWFKDSLVNGL-------QLTSVSRYPS----NMSAHGLTAVYVAD-------PPDVIAFLK 334 (385)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHTTT-------CCEESSCSSS----TTBCSSCEEEECSC-------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHhc-------CceecccCcc----cccCCceEEEecCC-------HHHHHHHHH
Confidence 8877789999999999999999999 876 5777753211 1 237899998864 235888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe-cC---CCCCHHHHHHHHHhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS-FG---YMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis-~~---~~~t~eev~~l~~~~~~~ 498 (508)
++||.+++|..+.. ..+++|+| ++ +.+|.+|++++++.|+++
T Consensus 335 ~~gi~v~~g~~~~~----------------------------------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~ 380 (385)
T 2bkw_A 335 SHGVVIAGGIHKDI----------------------------------GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLA 380 (385)
T ss_dssp HTTEECBCCCCTTT----------------------------------GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHH
T ss_pred HCCeEEeCCCCccc----------------------------------CCCEEEEEccccccccCCHHHHHHHHHHHHHH
Confidence 89999998764321 25789999 65 357999999999999887
Q ss_pred hhh
Q 010538 499 VNF 501 (508)
Q Consensus 499 ~~~ 501 (508)
++.
T Consensus 381 ~~~ 383 (385)
T 2bkw_A 381 LQR 383 (385)
T ss_dssp TTC
T ss_pred HHh
Confidence 653
No 33
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=100.00 E-value=1e-31 Score=273.28 Aligned_cols=355 Identities=13% Similarity=0.016 Sum_probs=256.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhh-HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATC-DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
.+.|+.+ ...+++.+++++.+. ++ + .. .... ...+++++++++++|.+.+..++++|+|+|+|+.++
T Consensus 5 ~~~~~~g-p~~~~~~v~~a~~~~-----~~--~---~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~ 72 (366)
T 1m32_A 5 YLLLTPG-PLTTSRTVKEAMLFD-----SC--T---WD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAV 72 (366)
T ss_dssp CEECSSS-SCCCCHHHHHTTCCC-----CC--T---TS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHH
T ss_pred cccccCC-CcCCCHHHHHHHhhh-----hc--C---CC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHH
Confidence 4445545 445688887765331 11 1 11 1112 557889999999999421101699999999999999
Q ss_pred HhhcCCCCCCeEEEe-cccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYT-MENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~-~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ .++|++|++. ...|++. +...++..|++++.+|.+..+.+ |+++++ +++.+
T Consensus 73 ~~~~-~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l~~---- 128 (366)
T 1m32_A 73 LGSA-LGPQDKVLIVSNGAYGAR--MVEMAGLMGIAHHAYDCGEVARP---------------DVQAID--AILNA---- 128 (366)
T ss_dssp HHHS-CCTTCCEEEEESSHHHHH--HHHHHHHHTCCEEEEECCTTSCC---------------CHHHHH--HHHHH----
T ss_pred HHHh-cCCCCeEEEEeCCCccHH--HHHHHHHhCCceEEEeCCCCCCC---------------CHHHHH--HHHhc----
Confidence 9998 5677776554 5677653 23444556999999998765545 577777 55532
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+..++++..+++|++++|+||+++
T Consensus 129 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~ 196 (366)
T 1m32_A 129 DPTISHIAMVHSETTTGMLNPIDEVGALAHR------------YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQ 196 (366)
T ss_dssp CTTCCEEEEESEETTTTEECCHHHHHHHHHH------------HTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTC
T ss_pred CCCeEEEEEecccCCcceecCHHHHHHHHHH------------cCCEEEEECCccccCcCccccccCccEEEecCccccc
Confidence 1357899999999999999999999999998 8999999999999988888877789999999999875
Q ss_pred CCCcceEEEEechhHhhhccccccCceEEecccc-hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcC-hHHHHH
Q 010538 279 YPTGLGALIMRNDAAKLLKNTYFSGGTVAASIAD-IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLT-VPAICR 356 (508)
Q Consensus 279 ~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~~ 356 (508)
+|.|+|++++++++++.+.+...+.. .+. ..+... ........++++...++++.++++.+.+.| ++++.+
T Consensus 197 ~~~g~G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 269 (366)
T 1m32_A 197 GVPGFAFVIAREQKLAACKGHSRSLS-----LDLYAQWRCM--EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQ 269 (366)
T ss_dssp CCSSEEEEEEEHHHHTTCTTCCSCST-----TCHHHHHHHH--HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCceEEEEECHHHHHhhcCCCCCcc-----ccHHHHHhhh--cccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHH
Confidence 58899999999998776654311100 000 000000 000012245788888989999999887777 889999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc
Q 010538 357 HIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP 436 (508)
Q Consensus 357 ~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~ 436 (508)
+++++++++.+.|+++ +++++.+... +.+.++++.+++.. ..+..++.+.|.++||.+++|..|
T Consensus 270 ~~~~~~~~l~~~L~~~-------~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~-- 333 (366)
T 1m32_A 270 RYQQNQRSLVAGMRAL-------GFNTLLDDEL-----HSPIITAFYSPEDP--QYRFSEFYRRLKEQGFVIYPGKVS-- 333 (366)
T ss_dssp HHHHHHHHHHHHHHHT-------TCCBSSCGGG-----BCSSEEEEECCCCT--TCCHHHHHHHHHHTTEECEECCCS--
T ss_pred HHHHHHHHHHHHHHHC-------CCeeccCchh-----cCceEEEEEcCccC--CCCHHHHHHHHHHCCEEEECCcCC--
Confidence 9999999999999886 4665554211 12558899886310 134456888998999999987654
Q ss_pred hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 437 GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 437 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+++|++++.++|.+|+++++++|+++++
T Consensus 334 ----------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 334 ----------------------------------QSDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ----------------------------------SSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred ----------------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 157899999999999999999999988764
No 34
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.1e-31 Score=271.56 Aligned_cols=334 Identities=14% Similarity=0.017 Sum_probs=255.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
..||+++.+ ++++.+++++.+ .+...+.++. .+ ....+..+++++++++++|++++ +|++|+|+|+|+.+++
T Consensus 32 ~~~~~~~~~-~~~~~v~~a~~~-~~~~~~~~~~-~~---~~~~~~~~~l~~~la~~~~~~~~--~i~~~~ggt~a~~~~~ 103 (397)
T 3f9t_A 32 GNIFGSMCS-NVLPITRKIVDI-FLETNLGDPG-LF---KGTKLLEEKAVALLGSLLNNKDA--YGHIVSGGTEANLMAL 103 (397)
T ss_dssp TCBCSCSCC-CCCTHHHHHHHH-HTTCCTTSGG-GB---HHHHHHHHHHHHHHHHHTTCTTC--EEEEESCHHHHHHHHH
T ss_pred CCeEEEecC-CCcHHHHHHHHH-HHhhcCCCcc-cC---hhHHHHHHHHHHHHHHHhCCCCC--CEEEecCcHHHHHHHH
Confidence 468888755 457778877755 3333333332 11 23567788899999999999988 8999999999999999
Q ss_pred hhcCCC------------CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 121 EAFPWS------------HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 121 ~~l~~~------------~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
.++... +|++|+++...|+++....+. .|++++.+|.+.++.+ |+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~---------------d~~~l~- 164 (397)
T 3f9t_A 104 RCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM---MDLEYIYAPIKEDYTI---------------DEKFVK- 164 (397)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH---HTCEEEEECBCTTSSB---------------CHHHHH-
T ss_pred HHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH---cCceeEEEeeCCCCcC---------------CHHHHH-
Confidence 887432 489999999999887665544 4999999999876655 678887
Q ss_pred CCCCCCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----------
Q 010538 189 GASFPERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---------- 257 (508)
Q Consensus 189 ~~~l~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---------- 257 (508)
+++ .+ ++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..
T Consensus 165 -~~i------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~~~~~~~~~~ 225 (397)
T 3f9t_A 165 -DAV------EDYDVDGIIGIAGTTELGTIDNIEELSKIAKE------------NNIYIHVDAAFGGLVIPFLDDKYKKK 225 (397)
T ss_dssp -HHH------HHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEECTTGGGTGGGCCGGGCCT
T ss_pred -HHH------hhcCCeEEEEECCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEccccchhhhhcccccccc
Confidence 544 33 78999999999999999999999999998 8999999999985433
Q ss_pred ----CCCCCCCCCcEEEEeccccccCCCcceEEEEechhH-hhhc---cccccCceEEecccchhhhhhccCccccccCC
Q 010538 258 ----PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAA-KLLK---NTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 258 ----~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
++++.. ++|++++|+||++++|.++|+++++++.+ +.+. +.+.++ ......+
T Consensus 226 ~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 285 (397)
T 3f9t_A 226 GVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTET-------------------RQATILG 285 (397)
T ss_dssp TCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSS-------------------EECSSCS
T ss_pred cccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCC-------------------Ccccccc
Confidence 555555 89999999999886577799999987643 3332 221111 1112235
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.+.....++.+++..+...+++++.++..++++++.+.|+++ +++++.++. +++++|.+++
T Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~--- 347 (397)
T 3f9t_A 286 TRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN-------NFKPVIEPI--------LNIVAIEDED--- 347 (397)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCCS--------SSEEEEECTT---
T ss_pred ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEcCCC--------ccEEEEEeCC---
Confidence 5555567788888887777778999999999999999999987 466555533 7888888754
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
..++.+.|.++||.++++. .++++|++++.++|.+|++
T Consensus 348 ----~~~~~~~l~~~gi~v~~~~--------------------------------------~~~~~Ri~~~~~~~~e~i~ 385 (397)
T 3f9t_A 348 ----YKEVCKKLRDRGIYVSVCN--------------------------------------CVKALRIVVMPHIKREHID 385 (397)
T ss_dssp ----HHHHHHHHHHTTCBCEECS--------------------------------------SSSEEEEECCTTCCHHHHH
T ss_pred ----HHHHHHHHHhCCeEEeccC--------------------------------------CCCEEEEEEcCCCCHHHHH
Confidence 2358888989999998763 1478999999999999999
Q ss_pred HHHHhhhhhhh
Q 010538 490 VNRCSSFDFVN 500 (508)
Q Consensus 490 ~l~~~~~~~~~ 500 (508)
++++.|+++++
T Consensus 386 ~~~~~l~~~l~ 396 (397)
T 3f9t_A 386 NFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhC
Confidence 99999988753
No 35
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=100.00 E-value=6e-33 Score=293.37 Aligned_cols=367 Identities=11% Similarity=-0.016 Sum_probs=252.6
Q ss_pred CchHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC----------ccchhhhhhHHHHHHHHHH
Q 010538 24 KSIDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS----------QSDISLATCDIVRAAREQV 93 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~r~~l 93 (508)
.++.++|+ +||.+ ++.+|||+++++++++.|.+++....... +.++.. .+..+.....+.+++++++
T Consensus 66 ~~i~~~~~-~~~~~-~~~~yld~aa~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 142 (456)
T 2z67_A 66 EKIKLFLK-FLSMM-DTDKDPKSVRIGEREARTYSKIHEELSSG-FCHGIGRSGNLVDPQPKASGASIMYALTNKILESF 142 (456)
T ss_dssp HHHHHHHH-HHHTT-BGGGCTTCEECSSCCCCCSCHHHHHHTTT-CTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhc-cccccccccccccccccccccccCccccc-cCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHH
Confidence 35778898 99999 78899999999999998888765432111 111111 0111223567788999999
Q ss_pred HHHcCCCCCCceEEEcCChHH-HHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc---CCccCccc
Q 010538 94 LDYFNASMKDYKCIFTSGATA-ALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV---EEAVDNDG 168 (508)
Q Consensus 94 a~~~~~~~~~~~i~~t~g~t~-al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~---~~~~~~~~ 168 (508)
++++|++++ ++||+|+|+ ++.+++.++. +.++++|+++..+|+++... ++..|++++.++. ++++.+
T Consensus 143 a~~~g~~~~---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~---~~~~G~~~~~v~~~~~~~~~~~-- 214 (456)
T 2z67_A 143 FKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKA---VSFVGMNMRLVETVLDGDRVYV-- 214 (456)
T ss_dssp HHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH---HHHTTCEEEEECCEEETTEEEC--
T ss_pred HHHcCCCCC---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHH---HHHcCCCceEEEEeccCCCCCc--
Confidence 999999754 999999994 5554555541 12677888888899986544 4457999999987 444555
Q ss_pred cccccccccccccchhhhhcCCCC-CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 169 LSESLVTSTKISLLPIQRRKGASF-PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 169 l~~~~~~~~~~~~d~~~l~~~~~l-~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ ++| ++. ..+++.+|++++++|+||.+.|+++|.++|++ +|++++
T Consensus 215 -------------d~~~l~--~~i~~~~--~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~------------~g~~v~ 265 (456)
T 2z67_A 215 -------------PVEDIE--NAIKKEI--ELGNRPCVLSTLTFFPPRNSDDIVEIAKICEN------------YDIPHI 265 (456)
T ss_dssp -------------CHHHHH--HHHHHHH--HTTCCEEEEEESSCCTTBCCCCHHHHHHHHHH------------HTCCEE
T ss_pred -------------CHHHHH--HHHHHHh--hCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCcEE
Confidence 678887 555 210 01367888889999999999999999999998 899999
Q ss_pred EeccccC---CCCCCCCCCC--CCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccC
Q 010538 248 IDAAKGC---VTQPPDLSKY--PVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 248 vD~a~~~---g~~~~d~~~~--~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|++++. |..+.+...+ ++|++++|+||++++|.|+|+++++ +++++.+.+.+.|+.
T Consensus 266 vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~----------------- 328 (456)
T 2z67_A 266 INGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA----------------- 328 (456)
T ss_dssp EECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB-----------------
T ss_pred EECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC-----------------
Confidence 9977653 4444443322 7999999999987669999999995 567666666544331
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
+....+++.+++..+...|++++.+++.++++++.+.|++++. .+++.++.+ .++++
T Consensus 329 ----------~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~g~~v~~~----------~~~v~ 385 (456)
T 2z67_A 329 ----------SATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSK---KTGGKFLDV----------ESPIA 385 (456)
T ss_dssp ----------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCCBCCC----------CCSSE
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCEecCC----------CCeEE
Confidence 1112556666777777778899999999999999999988620 004444432 16677
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCe-eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQ-LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~-v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
|.+... .. ..++.+.|.++||. ++..... + .++ +++|.. ...+++|+|++
T Consensus 386 ~~~~~~-~~---~~~l~~~L~~~gi~~~rv~~~~--g---------------~f~-G~~~~~-------~~~~~vr~s~~ 436 (456)
T 2z67_A 386 SCISVN-SD---PVEIAAKLYNLRVTGPRGIKKT--D---------------HFG-NCYLGT-------YTHDYIVMNAA 436 (456)
T ss_dssp EEEECS-SC---HHHHHHHHHHTTEESCEEECTT--C---------------HHH-HTCSSC-------CSCCEEEEECC
T ss_pred EEEecc-cH---HHHHHHHHHHcCCCcceEEeec--C---------------ccc-cccccc-------cCcchhhhhhh
Confidence 777311 11 23578888888862 2221000 0 011 112221 12478999999
Q ss_pred CCCCHHHHHHHHHhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~ 499 (508)
+++|.+||+++++.|++++
T Consensus 437 ~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 437 IGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TTCCHHHHHHHHHHHHTC-
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 36
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=100.00 E-value=1.3e-30 Score=274.96 Aligned_cols=352 Identities=14% Similarity=0.025 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC---ceEEEcCChHHHHHHHHhhcCC-
Q 010538 50 TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD---YKCIFTSGATAALKLVGEAFPW- 125 (508)
Q Consensus 50 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~---~~i~~t~g~t~al~~~~~~l~~- 125 (508)
+++++.+.+++.+.+ .. ++. .+..+....++.+++++++++++|++.+. ..+++|+|+|+|+.+++.++..
T Consensus 52 ~~~~~~v~e~~~~a~-~~---~~~-~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~ 126 (452)
T 2dgk_A 52 TWDDENVHKLMDLSI-NK---NWI-DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 126 (452)
T ss_dssp CCCCHHHHHHHHHTT-TC---BTT-CTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHh-cc---CCC-ChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence 456667766654433 21 111 12223456678889999999999998751 1389999999999998877631
Q ss_pred ------CCC-----CeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCC
Q 010538 126 ------SHQ-----SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 126 ------~~g-----~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
.+| ++|+++. .|+++.... +..|++++.||.+. ++.+ |+++++ ++|
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~---~~~G~~v~~v~~~~~~~~~---------------d~~~l~--~~i- 184 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFA---RYWDVELREIPMRPGQLFM---------------DPKRMI--EAC- 184 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCHHHHHHH---HHTTCEEEECCCBTTBCSC---------------CHHHHH--HHC-
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcHHHHHHH---HHcCceEEEEecCCCCCeE---------------CHHHHH--HHH-
Confidence 023 5899988 888776554 44699999999875 4555 689998 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC------CeEEEEeccccCCCC-------CCC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG------RWMVLIDAAKGCVTQ-------PPD 260 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~------g~~vivD~a~~~g~~-------~~d 260 (508)
+++|++|++++++|+||.+.|+++|.++|++ + |++++||++++.+.. +.+
T Consensus 185 -----~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~------------~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~ 247 (452)
T 2dgk_A 185 -----DENTIGVVPTFGVTYTGNYEFPQPLHDALDK------------FQADTGIDIDMHIDAASGGFLAPFVAPDIVWD 247 (452)
T ss_dssp -----CTTEEEEECBBSCTTTCBBCCHHHHHHHHHH------------HHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS
T ss_pred -----hhCCEEEEEEcCCcCCcccCCHHHHHHHHHH------------HhhccCCCCcEEEEcccHHHHHHhhCccchhh
Confidence 4578999999999999999999999999996 4 999999999987542 345
Q ss_pred CCCCCCcEEEEeccccccCCCcceEEEEech-hH-hhhc--cccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTGLGALIMRND-AA-KLLK--NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~-~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
+...++|++++|+|||+++|.|+|+++++++ .+ +.+. +.+.++.. ......++.+....
T Consensus 248 ~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~r~~~~~ 310 (452)
T 2dgk_A 248 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI-----------------GTFAINFSRPAGQV 310 (452)
T ss_dssp TTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCE-----------------EECCSCCSCBCHHH
T ss_pred cCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCC-----------------CCcccCCCChhHHH
Confidence 5555899999999998766889999999765 32 3221 22222211 00012345556567
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++++++..+...|++++.+++.++++++.+.|+++ ++++++.+... ....++++|++++.....++..+
T Consensus 311 ~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~~----~~~~~~v~f~~~~~~~~~~~~~~ 380 (452)
T 2dgk_A 311 IAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL------GPYEFICTGRP----DEGIPAVCFKLKDGEDPGYTLYD 380 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------SSEEEEEECCT----TTBSSEEEEEECTTCCCSCCHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC------CCeEEecCCCC----CCCeEEEEEEecCcccccCCHHH
Confidence 777788887777788999999999999999999987 36888865210 01278999998753222234456
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.++... .+... ...+++|+|++.++|.+|++++++.|+
T Consensus 381 l~~~L~~~Gi~v~~~~--~~~~~------------------------------~~~~~lRis~~~~~t~e~id~li~~l~ 428 (452)
T 2dgk_A 381 LSERLRLRGWQVPAFT--LGGEA------------------------------TDIVVMRIMCRRGFEMDFAELLLEDYK 428 (452)
T ss_dssp HHHHHHHTTCBCCEEE--CSTTC------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeeeeee--CCccc------------------------------CCeEEEEEEecCCCCHHHHHHHHHHHH
Confidence 8999999999876521 11100 015689999999999999999999999
Q ss_pred hhhhhhhh
Q 010538 497 DFVNFSQF 504 (508)
Q Consensus 497 ~~~~~~~~ 504 (508)
++++.++.
T Consensus 429 ~~~~~~~~ 436 (452)
T 2dgk_A 429 ASLKYLSD 436 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98876543
No 37
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=2.7e-32 Score=281.24 Aligned_cols=342 Identities=13% Similarity=0.063 Sum_probs=250.6
Q ss_pred cCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHH
Q 010538 69 YGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYA 148 (508)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~ 148 (508)
++++... ..+....+.++++++.+++++|++ + .++||+|+|+|+++++..+ .+|++||+...+|++. .+...+
T Consensus 21 ~~~~~~~-h~~~~~~~~~~~~~~~l~~~~~~~-~--~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~-~~~~~~ 93 (379)
T 3ke3_A 21 YTDRALN-HMSKAFQEVMNDLLSNLKTVYNAE-A--AVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSY-RWTQIL 93 (379)
T ss_dssp CCTTSCC-TTSHHHHHHHHHHHHHHHHHHTCS-E--EEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHH-HHHHHH
T ss_pred ccCCCCC-CCCHHHHHHHHHHHHHHHHHhCCC-C--EEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhH-HHHHHH
Confidence 4455433 335567789999999999999998 5 7999999999999988765 5789999888777664 344555
Q ss_pred HhcC--CeEEEEccCCcc------CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC-
Q 010538 149 LSQG--AAAFAIDVEEAV------DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN- 219 (508)
Q Consensus 149 ~~~G--~~v~~v~~~~~~------~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~- 219 (508)
+..| .++..++.+..+ ... ..|+++++ ++++ .+++++|++++++|+||.+.|
T Consensus 94 ~~~g~~~~~~~~~~~~~g~~~~~~~~~------------~~d~~~l~--~~i~-----~~~~~~v~~~~~~~~~G~~~~~ 154 (379)
T 3ke3_A 94 EKGKFAKSSTVLTAERTEDTEAPKPFA------------PVDIETAV--AKIK-----EDKSAIVYAPHVETSSGIILSE 154 (379)
T ss_dssp HHHCCSSEEEEEECEESSCCSSCCCEE------------CCCHHHHH--HHHH-----HHTCSEEEEESEETTTTEECCH
T ss_pred HHhCCCCceEEEeccccccccccCCCC------------CCCHHHHH--HHHh-----hcCCcEEEEEeecCCCceeCCH
Confidence 5555 478888764311 000 11677777 4442 236799999999999999999
Q ss_pred --HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhc
Q 010538 220 --LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLK 297 (508)
Q Consensus 220 --i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~ 297 (508)
+++|.++|++ +|+++++|++|+ |..++++.++++|++++|+||++++|.|+|++++++++++.+.
T Consensus 155 ~~l~~i~~~~~~------------~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~ 221 (379)
T 3ke3_A 155 EYIKALSEAVHS------------VGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVE 221 (379)
T ss_dssp HHHHHHHHHHHH------------TTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHH------------cCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhh
Confidence 8888888887 999999999999 9889988888999999999998887989999999999988776
Q ss_pred cccccCceEEecccchhhhhh---ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 298 NTYFSGGTVAASIADIDFVKR---RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
+...... ..+...|... ... ..+...+|+|+..++++.++++++.+.|++++.++..++++++++.|+++
T Consensus 222 ~~~~~~~----~~~~~~~~~~~~~~~~-g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-- 294 (379)
T 3ke3_A 222 STESNCF----SLDLKQWLTIMRAYEN-GGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-- 294 (379)
T ss_dssp TCCCSCS----TTCHHHHHHHHHHHHT-TSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cCCCCce----eecHHHHHHHHHhhhc-cCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc--
Confidence 5311110 0000011100 000 01112358999999999999999988899999999999999999999987
Q ss_pred CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhh
Q 010538 375 ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
+++++.++..+ ...++.+..++.+ ....+.|.++||.+++|..|....
T Consensus 295 -----g~~~~~~~~~~-----~~~i~~~~~~~~~------~~~~~~L~~~Gi~v~~g~~~~~~~---------------- 342 (379)
T 3ke3_A 295 -----GIESVAAEGFE-----APGVVVSYTERDD------MHKGSAFAEAGLQIAAGVPLKVGE---------------- 342 (379)
T ss_dssp -----TCCBSBCTTCB-----CSSEEEEECSCHH------HHSSHHHHHTTCCCEECCCCSSCC----------------
T ss_pred -----CCEecCCcccc-----CceEEEEccCCcc------hHHHHHHHHCCeEEeCCccccccc----------------
Confidence 57776654321 1334444443211 012567888999999987664321
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+.+|||++.++|.+||++++++|+++++.+
T Consensus 343 --------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 343 --------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp --------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 0125789999999999999999999999887654
No 38
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.98 E-value=3.6e-30 Score=275.26 Aligned_cols=356 Identities=14% Similarity=0.018 Sum_probs=259.9
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCC-ceEEEcCChHHHHHH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKD-YKCIFTSGATAALKL 118 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~-~~i~~t~g~t~al~~ 118 (508)
+++.+..++++++.+.+++.+. +...+.++. ......++.+++++++++++|++ +++ ...++|+|+|+|+++
T Consensus 58 ~~l~s~~t~~~~~~v~~~l~~~-~~~~~~~~~----~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~ 132 (502)
T 3hbx_A 58 LNLASFVTTWMEPECDKLIMSS-INKNYVDMD----EYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIML 132 (502)
T ss_dssp GBTTCCSCCCCCHHHHHHHHHT-TTCBTTCTT----TCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHH
T ss_pred ceeccccCCCCCHHHHHHHHHH-hccCCCChh----cChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHH
Confidence 3444444577788887776553 333222222 22335677888999999999998 441 123469999999998
Q ss_pred HHhhcCCC-------CCC-----eEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhh
Q 010538 119 VGEAFPWS-------HQS-----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 119 ~~~~l~~~-------~g~-----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
++.++..+ .|+ +|+++...|+++... ++..|++++.||.+++ +.+ |+++
T Consensus 133 a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~---~~~~G~~~~~v~~~~~~~~~---------------d~~~ 194 (502)
T 3hbx_A 133 AGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKF---ARYFEVELKEVKLSEGYYVM---------------DPQQ 194 (502)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHH---HHHTTCEEEEECCBTTBCSC---------------CHHH
T ss_pred HHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHH---HHHcCceeEEEecCCCcCcC---------------CHHH
Confidence 88776322 144 899999999886554 4456999999998764 555 6888
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC------CeEEEEeccccC-----
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG------RWMVLIDAAKGC----- 254 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~------g~~vivD~a~~~----- 254 (508)
++ +++ +++|++|++++++|+||.+.|+++|.++|++ + |++++||++|+.
T Consensus 195 l~--~~i------~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~------------~~~~~~~~~~l~VD~A~~~~~~p~ 254 (502)
T 3hbx_A 195 AV--DMV------DENTICVAAILGSTLNGEFEDVKLLNDLLVE------------KNKETGWDTPIHVDAASGGFIAPF 254 (502)
T ss_dssp HH--HHC------CTTEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HHHHHCCCCCEEEECTTGGGTHHH
T ss_pred HH--HHH------hhCCEEEEEecCCCCCCcccCHHHHHHHHHH------------hhhccCCCCeEEEECCccchhhhh
Confidence 98 555 4678999999999999999999999999997 7 999999999984
Q ss_pred --CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechh-Hhhh---ccccccCceEEecccchhhhhhccCccccccC
Q 010538 255 --VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLL---KNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 255 --g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+..+.++...++|++++|+||++++|.|+|+++++++. +... .+.+.++.. ......
T Consensus 255 ~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~-----------------~~~~~~ 317 (502)
T 3hbx_A 255 LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQ-----------------PTFTLN 317 (502)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCE-----------------EECCSC
T ss_pred hCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCC-----------------CCcccc
Confidence 33455666668999999999988669999999997543 2111 122222221 111122
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
++.+...++++.+++..+...|+.++.++..+++++|.+.|+++ ++++++.+.. ..++++|++++..
T Consensus 318 ~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~-------~~~~v~f~~~~~~ 384 (502)
T 3hbx_A 318 FSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT------ERFNIVSKDE-------GVPLVAFSLKDSS 384 (502)
T ss_dssp CSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCEEECSCSS-------SSSEEEEEESSCS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCEEEEeCCC-------CceEEEEEecCCC
Confidence 45555567888888888877788999999999999999999998 3699887622 2789999997532
Q ss_pred CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 409 GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 409 ~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.++..++.+.|.++||.++........ .....+||+++..+|.+|+
T Consensus 385 --~~~~~~l~~~L~~~Gi~v~~~~~p~~~--------------------------------~~~~~lRisv~~~~t~edi 430 (502)
T 3hbx_A 385 --CHTEFEISDMLRRYGWIVPAYTMPPNA--------------------------------QHITVLRVVIREDFSRTLA 430 (502)
T ss_dssp --SCCHHHHHHHHHTTTCBCCEEECCTTC--------------------------------TTCEEEEEECCTTCCHHHH
T ss_pred --cCCHHHHHHHHHhCCcEEeeccCCccc--------------------------------CCceEEEEEeCCCCCHHHH
Confidence 244456899999999998652211110 1247899999999999999
Q ss_pred HHHHHhhhhhhhhhhh
Q 010538 489 KVNRCSSFDFVNFSQF 504 (508)
Q Consensus 489 ~~l~~~~~~~~~~~~~ 504 (508)
+++++.|++.++.++.
T Consensus 431 d~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 431 ERLVIDIEKVMRELDE 446 (502)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876654
No 39
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=1.1e-29 Score=259.35 Aligned_cols=333 Identities=14% Similarity=0.104 Sum_probs=250.2
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..++. ++.. +++|+|+.+.... +++.+.+++.+ .......+| .....+++++++++++++++
T Consensus 21 ~~~~~~~-~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~y~----------~~~~~~lr~~la~~~~~~~~- 85 (363)
T 3ffh_A 21 REEEVMA-ELGL--TKITKLSSNENPLGTSKKVAAIQAN-SSVETEIYP----------DGWASSLRKEVADFYQLEEE- 85 (363)
T ss_dssp HHHHHHH-TTTC--SCCEECSSCSCTTCCCHHHHHHHHT-CBSCCCBC--------------CHHHHHHHHHHHTCCGG-
T ss_pred CHHHHHH-hcCC--CceEEccCCCCCCCCCHHHHHHHHH-HHHHhhcCC----------CcchHHHHHHHHHHhCCChh-
Confidence 5667776 7764 6899999886554 46667666544 322211111 12357889999999999888
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+|+|+++++.++ .++|++|+++...|+++. ..++..|++++.+|.+.+..+ |+
T Consensus 86 -~v~~~~g~t~a~~~~~~~~-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~---------------d~ 145 (363)
T 3ffh_A 86 -ELIFTAGVDELIELLTRVL-LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEH---------------DL 145 (363)
T ss_dssp -GEEEESSHHHHHHHHHHHH-CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCC---------------CH
T ss_pred -hEEEeCCHHHHHHHHHHHH-ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCc---------------CH
Confidence 8999999999999999998 688999999987666544 444556999999999865555 68
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCC
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPD 260 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d 260 (508)
++++ +++ ++++++|++++++||||.++|++++.++++. |++ |+++|+|++|+.... +..
T Consensus 146 ~~l~--~~i------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~---------~~~-~~~li~De~~~~~~~~~~~~~ 207 (363)
T 3ffh_A 146 EGML--NAI------DEKTTIVWICNPNNPTGNYIELADIQAFLDR---------VPS-DVLVVLDEAYIEYVTPQPEKH 207 (363)
T ss_dssp HHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTT---------SCT-TSEEEEECTTGGGCSSCCCCC
T ss_pred HHHH--Hhc------ccCCCEEEEeCCCCCcCCCcCHHHHHHHHHh---------CCC-CcEEEEeCchHhhcCccccCH
Confidence 8888 554 4679999999999999999999999999995 555 999999999984221 111
Q ss_pred CC---CCCCcEEEEeccccccCCCcc--eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 261 LS---KYPVDFVVMSFYKIFGYPTGL--GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 261 ~~---~~~~D~~~~S~~K~~g~P~G~--G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
+. ..+.++++.|++|++| ++|+ |++++++++++.+.+.. ..++++...
T Consensus 208 ~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~ 260 (363)
T 3ffh_A 208 EKLVRTYKNLIITRTFSKIYG-LASARVGYGIADKEIIRQLNIVR--------------------------PPFNTTSIG 260 (363)
T ss_dssp GGGGGTCTTEEEEEESSSTTC-CSSCCCEEEEECHHHHHHHHHTC--------------------------CSCCCBHHH
T ss_pred HHHhhcCCCEEEEeechhhhc-CchhceeeeecCHHHHHHHHHhC--------------------------CCCCCCHHH
Confidence 11 2244588999999998 6675 99999988877665441 123466677
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHH
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYR 415 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 415 (508)
.+++.++++.. ..++++++++.++++++.+.|++.. +++++.+. ++++++.++. +..
T Consensus 261 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~------g~~~~~~~---------~~~~~~~~~~------~~~ 317 (363)
T 3ffh_A 261 QKLAIEAIKDQ--AFIGECRTSNANGIKQYEAFAKRFE------KVKLYPAN---------GNFVLIDLGI------EAG 317 (363)
T ss_dssp HHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCT------TCEECCCC---------SSEEEEECSS------CHH
T ss_pred HHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhhCC------CceECCCC---------CeEEEEECCC------CHH
Confidence 77777777632 3468889999999999999999852 67776332 6788888864 234
Q ss_pred HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 416 EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 416 ~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++.+.|.++||.+++|..|.. ++++|+|++ |.+|+++++++|
T Consensus 318 ~~~~~l~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~---~~~~i~~~~~~l 359 (363)
T 3ffh_A 318 TIFSYLEKNGYITRSGAALGF-----------------------------------PTAVRITIG---KEEDNSAVIALL 359 (363)
T ss_dssp HHHHHHHHTTEECEETTTTTC-----------------------------------TTEEEEECC---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEeCccCCC-----------------------------------CCeEEEECC---CHHHHHHHHHHH
Confidence 588889899999999865421 578999998 999999999999
Q ss_pred hhh
Q 010538 496 FDF 498 (508)
Q Consensus 496 ~~~ 498 (508)
+++
T Consensus 360 ~~~ 362 (363)
T 3ffh_A 360 EKL 362 (363)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 40
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=3.4e-30 Score=263.19 Aligned_cols=343 Identities=13% Similarity=0.111 Sum_probs=257.2
Q ss_pred HHHhcccCCCCCCCCchHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHH
Q 010538 10 LKEFGEDYGYPNAPKSIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRA 88 (508)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (508)
++++. +|.... ....++. .|.. ++.++|+.+... ++++.+++++.+.. ...+.++... ..+
T Consensus 8 ~~~~~-~~~~~~---~~~~~~~-~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~----------~~~ 69 (365)
T 3get_A 8 LNNLS-NYEPGK---DIEVIAK-EYGV--KEVIKLASNENPFGTPPKAIECLRQNA-NKAHLYPDDS----------MIE 69 (365)
T ss_dssp GGGSC-CCCCCC---CHHHHHH-HTTC--SCCEECSSCCCTTCSCHHHHHHHHHHG-GGTTSCCCTT----------CHH
T ss_pred HhhcC-CCCCCC---CHHHHHH-hcCC--CceEEecCCCCCCCCCHHHHHHHHHHH-HhhccCCCCC----------hHH
Confidence 34444 365555 6777777 7765 689999987544 35777877775543 3332322211 146
Q ss_pred HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CCccCcc
Q 010538 89 AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EEAVDND 167 (508)
Q Consensus 89 ~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~~~~~~ 167 (508)
+|+++|+++|++++ +|++|+|+|+|+++++.++ .++|++|+++...|+++.. .++..|.+++.+|+ +.+. +
T Consensus 70 lr~~la~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~-~- 141 (365)
T 3get_A 70 LKSTLAQKYKVQNE--NIIIGAGSDQVIEFAIHSK-LNSKNAFLQAGVTFAMYEI---YAKQCGAKCYKTQSITHNL-D- 141 (365)
T ss_dssp HHHHHHHHHTCCGG--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTHHHH---HHHHHTCEEEECSSSSCCH-H-
T ss_pred HHHHHHHHhCCCcc--eEEECCCHHHHHHHHHHHH-hCCCCEEEEeCCChHHHHH---HHHHcCCEEEEEecCCCCC-C-
Confidence 79999999999888 8999999999999999998 6889999998877765544 44456999999998 4444 5
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ +++ ++++++|++++++||||.++|++++.++++ +|+ +|+++|
T Consensus 142 --------------d~~~l~--~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~-~~~~li 189 (365)
T 3get_A 142 --------------EFKKLY--ETH------KDEIKLIFLCLPNNPLGECLDASEATEFIK---------GVN-EDCLVV 189 (365)
T ss_dssp --------------HHHHHH--HHT------TTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------TSC-TTSEEE
T ss_pred --------------CHHHHH--HHh------CCCCCEEEEcCCCCCCCCCcCHHHHHHHHH---------hCC-CCcEEE
Confidence 688888 554 468999999999999999999999999999 453 699999
Q ss_pred Eecccc------CCCCCCCCC----CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhh
Q 010538 248 IDAAKG------CVTQPPDLS----KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDF 315 (508)
Q Consensus 248 vD~a~~------~g~~~~d~~----~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 315 (508)
+|++|+ .+..+.+.. ..+.++++.|+||++| ++| +|++++++++++.+.....
T Consensus 190 ~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~-------------- 254 (365)
T 3get_A 190 IDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYG-LGGLRIGYGIANANIISAFYKLRA-------------- 254 (365)
T ss_dssp EECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTS-CTTTCCEEEEECHHHHHHHHHHSC--------------
T ss_pred EeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhc-CcchheEEEEcCHHHHHHHHHhcC--------------
Confidence 999998 443334432 2256799999999998 445 8999998888776554311
Q ss_pred hhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 316 VKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 316 ~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
..+++....+++.++++.. ..++++++++.++++++.+.|+++ +++++.+.
T Consensus 255 ------------~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~-------- 305 (365)
T 3get_A 255 ------------PFNVSNLALKAAVAAMDDD--EFTEKTLENNFSQMELYKEFAKKH-------NIKIIDSY-------- 305 (365)
T ss_dssp ------------TTCSCHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHHHHHT-------TCEECCCS--------
T ss_pred ------------CCCcCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhC-------CCEECCCC--------
Confidence 1235666677777777632 347888999999999999999887 57765432
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
++++++.+++. +..++.+.|.++||.+++|..|. ++++
T Consensus 306 -~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~------------------------------------~~~i 343 (365)
T 3get_A 306 -TNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG------------------------------------LNAI 343 (365)
T ss_dssp -SSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT------------------------------------CSEE
T ss_pred -CeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC------------------------------------CCEE
Confidence 67788888653 23468889989999999876432 3789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~ 499 (508)
|+|++ |.+|++++++.|++++
T Consensus 344 Ris~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 344 RITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp EEECC---CHHHHHHHHHHHHHHH
T ss_pred EEEcC---CHHHHHHHHHHHHHHh
Confidence 99998 9999999999998865
No 41
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.97 E-value=1.3e-30 Score=273.86 Aligned_cols=370 Identities=13% Similarity=0.083 Sum_probs=254.0
Q ss_pred CchHHHHHHhhccCC-CC---CeeeeCCCC-CCCCHHHHHHHH--HHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH
Q 010538 24 KSIDQIRATEFKRLE-NG---TVYLDHAGA-TLYSELQMEAIF--RDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY 96 (508)
Q Consensus 24 ~~~~~~r~~~f~~~~-~~---~iyld~~~~-~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 96 (508)
.+...+++ +|+.+. ++ .+++.+++. ....|.+++++. ..+...+ +|... ..+....+..++++++++++
T Consensus 45 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~--~~~~~-~~~~g~~~~~~~~~~~la~~ 120 (438)
T 1wyu_A 45 LPEWKVLE-ELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAY--TPYQP-EVSQGVLQATFEYQTMIAEL 120 (438)
T ss_dssp CCHHHHHH-HHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCC--SCCSG-GGCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhcC--CCCcc-hhhhhHHHHHHHHHHHHHHH
Confidence 45667888 888763 22 333443433 122334545554 2332221 23211 12344667889999999999
Q ss_pred cCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCcccccccccc
Q 010538 97 FNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 97 ~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
+|++++ ++++++|+|.+++.+..++.+.+|++|+++...|+++...++ +++..|++++.+|.+ ++.+
T Consensus 121 ~g~~~~--~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~-~~~~--------- 188 (438)
T 1wyu_A 121 AGLEIA--NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE-GGRT--------- 188 (438)
T ss_dssp HTSSEE--CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB-TTBC---------
T ss_pred hCCCcc--ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc-CCcc---------
Confidence 999877 789999999544444443334678999999999999876554 456689999999873 3333
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc-ccC
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA-KGC 254 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a-~~~ 254 (508)
|+ + + ++++|++|+++++ |+||.+.|+++|.++|++ +|+++++|.. ++.
T Consensus 189 ------d~---~--~-------i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~------------~g~~vivd~d~~a~ 237 (438)
T 1wyu_A 189 ------PL---P--E-------VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHG------------AGALFVAVADPLSL 237 (438)
T ss_dssp ------CC---C--C-------CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHH------------TTCEEEEECCTTGG
T ss_pred ------CH---H--H-------hCCCeEEEEEECC-CCCeEEecHHHHHHHHHH------------cCCEEEEEechhhc
Confidence 11 2 1 2467999999998 999999999999999998 8999998865 666
Q ss_pred CCCCCCCCCCCCcEEEEeccc-----cccCCCcceEEEEechhHhhhccccccCceEEecccchhhhh--hccCcccccc
Q 010538 255 VTQPPDLSKYPVDFVVMSFYK-----IFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVK--RRQGVEELFE 327 (508)
Q Consensus 255 g~~~~d~~~~~~D~~~~S~~K-----~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~ 327 (508)
|..+.+ .++++|++++|+|| |++|| |+|++++++++++.+.+...|+. .. ......|.. .......+++
T Consensus 238 g~~~~~-~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~-~~-~~~~~~~~~~l~~~~~~~r~~ 313 (438)
T 1wyu_A 238 GVLKPP-GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSET-VD-VEGRRGFILTLQAREQYIRRA 313 (438)
T ss_dssp GTBCCH-HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEE-EB-TTSCEEEEECCGGGSHHHHGG
T ss_pred cCcCCC-ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccc-cc-cCCCcceeeeccccccccchh
Confidence 654443 45689999999887 66678 89999999998776654433321 10 000000100 0001123456
Q ss_pred CCCCCh---hHHHHHHHH--HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 328 DGTASF---LSIASIRHG--FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 328 ~gt~~~---~~~~~l~~a--l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
.+|+|+ ..++++.++ +..+...|++++.+++.++++++.+.|+++ +|++++.+... ..++.+
T Consensus 314 ~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~-------~~~~~~ 380 (438)
T 1wyu_A 314 KAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV------PGVRPFTPKPF-------FNEFAL 380 (438)
T ss_dssp GSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTCEECSCSSB-------CSEEEE
T ss_pred cccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEECCCCCe-------EEEEEE
Confidence 678877 566676666 776666678999999999999999999987 37888765321 344555
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCee--ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQL--RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v--~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
.++ .+..++.+.|.++||.+ +++..| .++++|||++
T Consensus 381 ~~~------~~~~~~~~~L~~~gi~v~~~~~~~~------------------------------------~~~~lRis~~ 418 (438)
T 1wyu_A 381 ALP------KDPEAVRRALAERGFHGATPVPREY------------------------------------GENLALFAAT 418 (438)
T ss_dssp ECS------SCHHHHHHHHHHTTCCCCEECCTTS------------------------------------CSSEEEEECC
T ss_pred eCC------CCHHHHHHHHHHCCceecccccccc------------------------------------CCCeEEEEec
Confidence 542 23456888998999998 555432 1578999999
Q ss_pred CCCCHHHHHHHHHhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~ 499 (508)
.++|.+|++++++.|++++
T Consensus 419 ~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 419 ELHEEEDLLALREALKEVL 437 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 42
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=279.94 Aligned_cols=364 Identities=13% Similarity=0.060 Sum_probs=246.6
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
...||++..++..++.++.+++..+ .|++. .+..+....++.+++++++++++|++++ +++||+|+|+|+.+
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~~-----~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~--~~~~t~ggtea~~~ 180 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITES-----LNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSG--DGIFCPGGSISNMY 180 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHHH-----HCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSC--EEEEESSHHHHHHH
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHHH-----hccCCCchhhchHHHHHHHHHHHHHHHHhCCCCC--CeEEcCCcHHHHHH
Confidence 5679999988876655555444332 24443 3444555677888899999999999877 89999999999888
Q ss_pred HHhhcCC------C-CCC------eEEEecccccchHHHHHHHHhcCC---eEEEEccCCccCccccccccccccccccc
Q 010538 119 VGEAFPW------S-HQS------SYMYTMENHNSVLGIREYALSQGA---AAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 119 ~~~~l~~------~-~g~------~vl~~~~~h~s~~~~~~~~~~~G~---~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
++.++.. + +|+ +|+++...|+++....+.+ |. +++.||.+.++.+ |
T Consensus 181 al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~---------------d 242 (515)
T 2jis_A 181 AVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKM---------------V 242 (515)
T ss_dssp HHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCB---------------C
T ss_pred HHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcC---------------C
Confidence 8777521 1 354 8999999999988665544 55 8999998766666 5
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC--
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD-- 260 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d-- 260 (508)
+++++ ++|++....+.+|++|++++++|+||.+.|+++|.++|++ +|+++|+|++++.+..+.+
T Consensus 243 ~~~L~--~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~------------~g~~l~vD~a~~~~~~~~~~~ 308 (515)
T 2jis_A 243 PEDLE--RQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQR------------HGLWLHVDAAWGGSVLLSQTH 308 (515)
T ss_dssp HHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGGGCTTT
T ss_pred HHHHH--HHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHH------------cCCeEEEehhhhhHHHhChhh
Confidence 77887 5553211112358999999999999999999999999998 8999999999998887665
Q ss_pred ---CCCC-CCcEEEEeccccccCCCcceEEEEech--hHhhh----ccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 261 ---LSKY-PVDFVVMSFYKIFGYPTGLGALIMRND--AAKLL----KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 261 ---~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~--~~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+... ++|++++|+|||+++|.|+|+++++++ +++.. .+.+.++.... ...+. ........+.
T Consensus 309 ~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~----~~~~~----~~~~~~~~~r 380 (515)
T 2jis_A 309 RHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFY----DVALD----TGDKVVQCGR 380 (515)
T ss_dssp GGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCS----CGGGC----CGGGCSCSSC
T ss_pred HhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccc----cccCC----CCCCCCCCCC
Confidence 4444 789999999999888999999999987 55542 22222221100 00000 0000001111
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC---
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP--- 407 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 407 (508)
. . ....++++++.+...|++++.+++.++++++.+.|+++ ++++++.++. .+.++|+....
T Consensus 381 r-~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~--------~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 381 R-V-DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR------EGFELVMEPE--------FVNVCFWFVPPSLR 444 (515)
T ss_dssp C-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTEEESSCCS--------SSEEEEEECCGGGT
T ss_pred c-c-cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCC--------eeEEEEEEeCcccc
Confidence 0 0 12344455665666678999999999999999999987 4799987643 46677876311
Q ss_pred ---CCCccCH------HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 408 ---DGSWFGY------REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 408 ---~~~~~~~------~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
+...+.. ..+.+.|.+.|+...... .. ....+++|++
T Consensus 445 ~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~---~~-------------------------------~~~~~~lRis 490 (515)
T 2jis_A 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQ---PH-------------------------------GTRGNFFRVV 490 (515)
T ss_dssp TCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEE---EE-------------------------------TTEEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE---EE-------------------------------CCceEEEEEE
Confidence 1111100 114455666675532100 00 0014689999
Q ss_pred c-CCCCCHHHHHHHHHhhhhhhh
Q 010538 479 F-GYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 479 ~-~~~~t~eev~~l~~~~~~~~~ 500 (508)
+ +.++|.+||+++++.|+++.+
T Consensus 491 ~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 491 VANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 9 899999999999999987764
No 43
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.97 E-value=1.6e-29 Score=261.81 Aligned_cols=343 Identities=13% Similarity=0.054 Sum_probs=245.0
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEE-cCChHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIF-TSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~-t~g~t~al 116 (508)
.+.+|+.+++.+++|+.+++++.+ .... ... ....+....+..+++++++++++|++. + +|++ |+|+|+|+
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~-~~~~---~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~~--~i~~~t~g~t~al 110 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTT-TAAA---LFG-TSHRQAPVKNLVGRVRSGLAELFSLPDGY--EVILGNGGATAFW 110 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGT-TTTT---TTT-SCTTSHHHHHHHHHHHHHHHHHTTCCTTC--EEEEEETCHHHHH
T ss_pred ccCCccccCCCCCCCHHHHHHHhh-cCCC---ccC-cCcCCHHHHHHHHHHHHHHHHHhCCCCCc--eEEEeCCchhHHH
Confidence 345677778888889988887644 1000 011 001123345678899999999999974 5 8998 99999999
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhc--CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQ--GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~--G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++++.++ .++| .++++..+|... +...+... |.+++.+|.+ ++... . ..
T Consensus 111 ~~~~~~l-~~~g-v~~v~~~~~~~~--~~~~~~~~~~g~~~~~v~~~-~g~~~-------------------~--~~--- 161 (398)
T 2fyf_A 111 DAAAFGL-IDKR-SLHLTYGEFSAK--FASAVSKNPFVGEPIIITSD-PGSAP-------------------E--PQ--- 161 (398)
T ss_dssp HHHHHHT-CSSC-EEEEECSHHHHH--HHHHHHHCTTSCCCEEEECC-TTCCC-------------------C--CC---
T ss_pred HHHHHHh-cCCC-eEEEeCCHHHHH--HHHHHHHhCCCCceEEEecC-CCCCC-------------------C--cc---
Confidence 9999998 5666 333355445321 22234444 7888888886 33221 1 11
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecc
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFY 274 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~ 274 (508)
.+++|++|++++++|+||.++|+++|.++ +|+++|+|++|+.+..++++. ++|++++|+|
T Consensus 162 ---i~~~~~~v~~~~~~nptG~~~~~~~i~~~---------------~~~~vivD~a~~~~~~~~~~~--~~di~~~s~s 221 (398)
T 2fyf_A 162 ---TDPSVDVIAWAHNETSTGVAVAVRRPEGS---------------DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQ 221 (398)
T ss_dssp ---CCTTCSEEEEESEETTTTEECCCCCCTTC---------------C-CEEEEECTTTTTTSCCCGG--GCSEEEECTT
T ss_pred ---ccCCCCEEEEeCcCCCcceecchHHhhhh---------------cCCeEEEEeccccCCcccCcc--cCcEEEEecC
Confidence 24678999999999999999999887643 599999999999999888765 3899999999
Q ss_pred ccccCCCcceEEEEechhHhhhccc---------cccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 275 KIFGYPTGLGALIMRNDAAKLLKNT---------YFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 275 K~~g~P~G~G~l~~~~~~~~~l~~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
|++|.|.|+|+++++++.++.++.. +..++. ... ........++++...++++.+++++
T Consensus 222 K~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~t~~~~~~~a~~~al~~ 289 (398)
T 2fyf_A 222 KNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI---------AVE---NSLKNQTYNTPAIATLALLAEQIDW 289 (398)
T ss_dssp STTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH---------HHH---HHTTTCCSSCCCHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH---------Hhh---hcccCCCCCCCCHHHHHHHHHHHHH
Confidence 9999444699999999987766421 111110 000 0001234578899889999999998
Q ss_pred HHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC-CCCCcccCCCCc-eEEEEeeCCCCCccCHHHHHHHHh
Q 010538 346 INSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT-YTSEVSYHDTGS-MVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 346 ~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+.+.| ++++.++.+++++++.+.|+++ ++++++.+ +.. +++ +++|+++.. ++..++.+.|.
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~l~~~L~ 353 (398)
T 2fyf_A 290 LVGNGGLDWAVKRTADSSQRLYSWAQER------PYTTPFVTDPGL------RSQVVGTIDFVDD----VDAGTVAKILR 353 (398)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHS------TTEEESCCSGGG------BCSSEEEEEECTT----SCHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHc------CCceeccCChhh------cCCcEEEEECCCC----CCHHHHHHHHH
Confidence 77766 8999999999999999999987 36888752 211 144 899998532 34456889998
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+++|.. . ..++++|||++.++|.+|+++++++|+++++
T Consensus 354 ~~gI~v~~g~~---~--------------------------------~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 354 ANGIVDTEPYR---K--------------------------------LGRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp HTTCBCCSCCT---T--------------------------------TCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HCCcEEecCcc---c--------------------------------CCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 89999987621 0 1147899999999999999999999988764
No 44
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=6.8e-31 Score=272.03 Aligned_cols=369 Identities=13% Similarity=0.068 Sum_probs=252.7
Q ss_pred HHHHHHhcccCCCCCCCCchHHHHHHhhccCCC------C---CeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCcc
Q 010538 7 EEFLKEFGEDYGYPNAPKSIDQIRATEFKRLEN------G---TVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQS 76 (508)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~------~---~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 76 (508)
.+-+++-+ .|.... +++.+|. +||.+.. + +.|+++...+ .++|.+.+++.+.+ .....+++. +
T Consensus 11 ~~~~~~~~-~~~~~~---~~~~~~~-~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~-~~~~~~~~~-~ 83 (401)
T 2bwn_A 11 IQKLHDEG-RYRTFI---DIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEAL-EAVGAGSGG-T 83 (401)
T ss_dssp HHHHHHTT-CCCCCC---EEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHH-HHHCSCCCS-B
T ss_pred HHHHHhcC-Cceehh---hhhcccc-cccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHH-HHcCCCCCC-c
Confidence 33344433 244444 6778898 9998731 1 3456554433 24677877765543 333333331 2
Q ss_pred chhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeE
Q 010538 77 DISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAA 155 (508)
Q Consensus 77 ~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v 155 (508)
...+......+++++.+|+++|.+ + +|++|+|++ ++..++..+. ..+|++|+++...|+++...+ +..|+++
T Consensus 84 ~~~~~~~~~~~~l~~~la~~~~~~-~--~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~ 156 (401)
T 2bwn_A 84 RNISGTTAYHRRLEAEIAGLHQKE-A--ALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGI---KRNAGPK 156 (401)
T ss_dssp TTTBCCBHHHHHHHHHHHHHTTCS-E--EEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH---HHSCCCE
T ss_pred CcccCChHHHHHHHHHHHHHhCCC-c--EEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHH---HHcCCeE
Confidence 222223456788999999999974 4 788888877 6666665542 357899999999998876554 4469999
Q ss_pred EEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 156 FAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 156 ~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
+.+|.+ + +++++ +.+.+ ...+++++|++++++||||.++|+++|.++|++
T Consensus 157 ~~v~~~---d-----------------~~~le--~~l~~--~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------ 206 (401)
T 2bwn_A 157 RIFRHN---D-----------------VAHLR--ELIAA--DDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE------ 206 (401)
T ss_dssp EEECTT---C-----------------HHHHH--HHHHH--SCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH------
T ss_pred EEEcCC---C-----------------HHHHH--HHHHh--hccCCceEEEEecCcCCCCCcCCHHHHHHHHHH------
Confidence 999875 1 23333 22211 011478999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCC---C---CCC--CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEE
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPD---L---SKY--PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d---~---~~~--~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~ 307 (508)
+|+++|+|++|+.|..... + ... +.|+++.|++|+++ ..| |+++.++++.+.+....
T Consensus 207 ------~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~------- 271 (401)
T 2bwn_A 207 ------FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAASARMVDAVRSYA------- 271 (401)
T ss_dssp ------HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEECHHHHHHHHHHC-------
T ss_pred ------cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecCHHHHHHHHHhC-------
Confidence 8999999999996532111 1 011 35899999999999 456 99999887766544220
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
....+..++++ ..++++.++++++.+.|++++.+++.++++++.+.|+++ +++++.+.
T Consensus 272 --------------~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~ 329 (401)
T 2bwn_A 272 --------------PGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-------GMPIIDHG 329 (401)
T ss_dssp --------------HHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCCS
T ss_pred --------------cCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC-------CCcccCCC
Confidence 01223345555 667778889998877677899999999999999999886 45555432
Q ss_pred CCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 388 TSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
++++++.+++. .+..++.+.| +++||.++++..+..+.
T Consensus 330 ---------~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~~~~~~~~~---------------------------- 368 (401)
T 2bwn_A 330 ---------SHIVPVVIGDP----VHTKAVSDMLLSDYGVYVQPINFPTVPR---------------------------- 368 (401)
T ss_dssp ---------SSCEEEECCCH----HHHHHHHHHHHHHHCEECCEECTTTSCT----------------------------
T ss_pred ---------CCeEEEEeCCh----HHHHHHHHHHHhcCCEEEeecCCCCCCC----------------------------
Confidence 56888887531 2234577777 48899998865322110
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+++|+|++.++|.+|+++++++|+++++.
T Consensus 369 ----~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 369 ----GTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp ----TCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred ----CCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 1368999999999999999999999987654
No 45
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.97 E-value=2.4e-29 Score=255.65 Aligned_cols=325 Identities=12% Similarity=0.098 Sum_probs=245.2
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.++|+.+.... +++.+++++.+.+ .... .|+ .....+++++++++++++++ +|++|+|+|+|++
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~-----~y~-----~~~~~~l~~~la~~~~~~~~--~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAV-VKAN-----RYA-----KNEILMLGNKLAAHHQVEAP--SILLTAGSSEGIR 82 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTG-GGTT-----SCC-----HHHHHHHHHHHHHHTTSCGG--GEEEESHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHH-hhCc-----CCC-----CCchHHHHHHHHHHhCCChH--HEEEeCChHHHHH
Confidence 6788998876544 5677777765533 3221 121 22467899999999999888 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ .++|++|+++...|+++. ..++..|.+++.+|.+.+..+ |+++++ +++++
T Consensus 83 ~~~~~l-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~--~~l~~--- 138 (354)
T 3ly1_A 83 AAIEAY-ASLEAQLVIPELTYGDGE---HFAKIAGMKVTKVKMLDNWAF---------------DIEGLK--AAVAA--- 138 (354)
T ss_dssp HHHHHH-CCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECCCTTSCC---------------CHHHHH--HHHHT---
T ss_pred HHHHHH-hCCCCeEEECCCCchHHH---HHHHHcCCEEEEecCCCCCCC---------------CHHHHH--HHhcc---
Confidence 999998 678999999887777654 445567999999998865555 678888 55521
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---CC----CCC-CCcEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---DL----SKY-PVDFV 269 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---d~----~~~-~~D~~ 269 (508)
.+++++|++++++||||.++|.+++.++++ +| ++|+++|+|++|+.....- .. ... +.+++
T Consensus 139 -~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~ 207 (354)
T 3ly1_A 139 -YSGPSIVYLVNPNNPTGTITPADVIEPWIA---------SK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIIL 207 (354)
T ss_dssp -CSSCEEEEEESSCTTTCCCCCHHHHHHHHH---------TC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEE
T ss_pred -CCCCCEEEEeCCCCCcCCCcCHHHHHHHHH---------hC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEE
Confidence 167899999999999999999999999999 46 6899999999998533221 11 122 56699
Q ss_pred EEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 270 ~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+.|+||++| ++| +|++++++++++.+.... ..++++....+++.++++..
T Consensus 208 ~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~- 259 (354)
T 3ly1_A 208 LKTFSKIHA-MAGMRVGYAVAHPTVIALMGRYV--------------------------AGEKINFSGVDAALASMNDS- 259 (354)
T ss_dssp EEESSSTTC-CGGGCCEEEECCHHHHHHHGGGT--------------------------TCSCCCHHHHHHHHHHTTCH-
T ss_pred EeeChhhcc-ChhhhheeeecCHHHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhcCH-
Confidence 999999998 545 799999988877665441 11456667777777776643
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
..++.+++++.++++++.+.|+++ +++++.+ . ++++++.+++ +..++.+.|.++||.
T Consensus 260 -~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~-~--------~~~~~~~~~~------~~~~~~~~l~~~gi~ 316 (354)
T 3ly1_A 260 -AFITYSKKSNDVSRQILLKALEDL-------KLPYLPS-E--------GNFVFHQLVV------PLKDYQTHMADAGVL 316 (354)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCC-C--------SSEEEEECSS------CHHHHHHHHHHTTEE
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHC-------CCeECCC-C--------ceEEEEECCC------CHHHHHHHHHHCCEE
Confidence 236888999999999999999886 4555422 2 6788888864 234588889899999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++ |.+|. .++++|||++ |.+|++++++.|+++++-
T Consensus 317 v~-g~~~~-----------------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 317 IG-RAFPP-----------------------------------ADNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CC-CCCTT-----------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred Ee-ecCCC-----------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 98 76442 1578999987 899999999999988764
No 46
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.97 E-value=5e-30 Score=273.84 Aligned_cols=367 Identities=13% Similarity=0.072 Sum_probs=250.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g~t~al~ 117 (508)
....|||+..+++.++.+++++..... + .+.. .+..+.....+.+++++++++++|+++ + +++||+|+|+|++
T Consensus 99 ~~~~yl~~~~~~~~~~~v~~~~~~~~~-n--~~~~-~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~t~ggt~a~~ 172 (497)
T 2qma_A 99 QHPDCIAHLHTPPLMPAVAAEAMIAAL-N--QSMD-SWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQ 172 (497)
T ss_dssp TSTTBCSSSCCCCBHHHHHHHHHHHHH-C--CCTT-CGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHH
T ss_pred CCCCeeEeCCCCCcHHHHHHHHHHHhh-c--cccc-chhhChHHHHHHHHHHHHHHHHhCCCCCC--CeEEcCCchHHHH
Confidence 456899999999989988888766443 1 1211 233344556677778999999999976 5 8999999999999
Q ss_pred HHHhhcC---C---------CC------CC-eEEEecccccchHHHHHHHHhcCC-eEEEEccCCccCcccccccccccc
Q 010538 118 LVGEAFP---W---------SH------QS-SYMYTMENHNSVLGIREYALSQGA-AAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 118 ~~~~~l~---~---------~~------g~-~vl~~~~~h~s~~~~~~~~~~~G~-~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++.+.. . .+ |+ +|+++...|+++....+.+. .|. +++.||.+.++.+
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~----------- 240 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG-LGEKAVMTVDANADGTM----------- 240 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTT-SCGGGEEEECBCTTSSB-----------
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcC-CCcccEEEEecCCCCcC-----------
Confidence 8877631 1 01 45 79999999998876655432 133 7999998766655
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|+++++ ++|++....+.++.+|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+..
T Consensus 241 ----d~~~L~--~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~------------~~~~l~vD~a~~~~~~ 302 (497)
T 2qma_A 241 ----DITKLD--EVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVK------------HDMWMHVDGAYGGALI 302 (497)
T ss_dssp ----CGGGHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGG
T ss_pred ----CHHHHH--HHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHH------------cCCEEEEehhhhHHHH
Confidence 567777 5553210001124488999999999999999999999998 8999999999998877
Q ss_pred CCC----CCCC-CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEeccc-chhhhhhccCccccccCCCC
Q 010538 258 PPD----LSKY-PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIA-DIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 258 ~~d----~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~gt~ 331 (508)
+.+ +..+ ++|++++|+|||+++|.|+|+++++++.. +.+............. ...+. ..... ++.
T Consensus 303 ~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~------~~~~~-~~r 373 (497)
T 2qma_A 303 LSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSN--FKFLLHHADYLNREHDELPNLV------DKSIA-TTK 373 (497)
T ss_dssp GSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGG--GGGGCC--------------------------C-CSC
T ss_pred hCcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHH--HHHhcCCchhcCCccccCCCcc------ccCCC-CCC
Confidence 665 2333 68999999999888798999999987652 2222111100000000 00000 00001 122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
.+. ...++++++.+...|++++.+++.++++++.+.|+++ ++++++.++. .++++|++.+....
T Consensus 374 ~~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~--------~~~v~f~~~~~~~~- 437 (497)
T 2qma_A 374 RFD-ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN------DQFELLAEPS--------LSTVLFRATHETAD- 437 (497)
T ss_dssp CCT-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC------TTEEECSCCS--------SSEEEEEECCSSSC-
T ss_pred chh-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEEcCCC--------ceEEEEEEcCCccC-
Confidence 222 3355667776666678899999999999999999987 4788876543 67999998643211
Q ss_pred cC--HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCCCCHHHH
Q 010538 412 FG--YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYMSTFEDA 488 (508)
Q Consensus 412 ~~--~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~eev 488 (508)
.+ ...+.+.|.++|+.+.++... ...+++|+|+ ++++|.+|+
T Consensus 438 ~~~l~~~l~~~l~~~G~~~~~~~~~-----------------------------------~g~~~lRis~~~~~~t~edi 482 (497)
T 2qma_A 438 LDELNKALRLEALTRGIAVLGETIV-----------------------------------DGKTALKFTILNPCLTTSDF 482 (497)
T ss_dssp HHHHHHHHHHHHHHHTSCBCEEEEE-----------------------------------TTEEEEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEE-----------------------------------CCEEEEEEEecCCCCCHHHH
Confidence 11 123556777788876542100 0146899998 899999999
Q ss_pred HHHHHhhhhhhhh
Q 010538 489 KVNRCSSFDFVNF 501 (508)
Q Consensus 489 ~~l~~~~~~~~~~ 501 (508)
+++++.|+++++.
T Consensus 483 ~~~~~~l~~~~~~ 495 (497)
T 2qma_A 483 ESLLSKINMLAVE 495 (497)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 47
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.97 E-value=4.2e-29 Score=251.93 Aligned_cols=315 Identities=14% Similarity=0.145 Sum_probs=234.0
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.|+|+.+... +++|.+.+++.+ ...... .|+ .....++|+.+|++++++++ +|++|+|+|++++
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~-~~~~~~-----~y~-----~~~~~~lr~~la~~~~~~~~--~i~~t~G~~~~l~ 82 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAA-AAARIN-----RYP-----FDAEPRVMRKLAEHFSCPED--NLMLVRGIDECFD 82 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHH-HGGGTT-----SCC-----TTHHHHHHHHHHHHHTSCGG--GEEEESHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHH-hhhhhc-----cCC-----CCchHHHHHHHHHHhCcCHH--HEEEeCCHHHHHH
Confidence 679999999654 456677666544 333221 121 12367889999999999988 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ +|++|+++...|+++. ..++..|++++.+|.+.+..+ |+++++ ++
T Consensus 83 ~~~~~~---~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~------ 133 (337)
T 3p1t_A 83 RISAEF---SSMRFVTAWPGFDGYR---ARIAVSGLRHFEIGLTDDLLL---------------DPNDLA--QV------ 133 (337)
T ss_dssp HHHHHS---TTSEEEEESSSCSHHH---HHHTTSCCEEEEECBCTTSSB---------------CHHHHT--TC------
T ss_pred HHHHhc---CCCeEEEeCCCcHHHH---HHHHHcCCEEEEecCCCCCCC---------------CHHHHH--hh------
Confidence 999987 7899998886666554 455567999999998765555 688888 32
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC--CCCCCCCCCCCCcEEEEeccc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--VTQPPDLSKYPVDFVVMSFYK 275 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--g~~~~d~~~~~~D~~~~S~~K 275 (508)
.+++++++++++||||.++|++++.+++++ +++ +++|++|+. +..+......+.++++.|+||
T Consensus 134 --~~~~~v~i~~p~nptG~~~~~~~l~~l~~~------------~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK 198 (337)
T 3p1t_A 134 --SRDDCVVLANPSNPTGQALSAGELDQLRQR------------AGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSK 198 (337)
T ss_dssp --CTTEEEEEESSCTTTCCCCCHHHHHHHHHH------------CSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSS
T ss_pred --cCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CCc-EEEECCChhhccccccccccCCCEEEEeeCch
Confidence 357999999999999999999999999997 787 566999872 222333334467899999999
Q ss_pred cccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 276 IFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 276 ~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
++| ++| +|++++++++++.+.+.. ..++++...+.++.++++... .+.+
T Consensus 199 ~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~--~~~~ 249 (337)
T 3p1t_A 199 SYG-LAGLRLGALFGPSELIAAMKRKQ--------------------------WFCNVGTLDLHALEAALDNDR--AREA 249 (337)
T ss_dssp TTC-CTTTCCEEEECCHHHHHHHHTTS--------------------------CTTCSCHHHHHHHHHHHTCHH--HHHH
T ss_pred hcc-CcchheEEEEeCHHHHHHHHhhc--------------------------CCCCCCHHHHHHHHHHhCCHH--HHHH
Confidence 998 556 699999998877665431 123455666666666655322 2566
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
..+++.++++++.+.|+++ ++++..+. ++++++..++ + ..+.+.|.++||.+++|..
T Consensus 250 ~~~~~~~~~~~l~~~L~~~-------g~~~~~~~---------~~~~~~~~~~--~-----~~~~~~l~~~gi~v~~g~~ 306 (337)
T 3p1t_A 250 HIAKTLAQRRRVADALRGL-------GYRVASSE---------ANFVLVENAA--G-----ERTLRFLRERGIQVKDAGQ 306 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCCBCCCS---------SSEEEEECTT--T-----HHHHHHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHC-------cCEECCCC---------CeEEEEEcCC--H-----HHHHHHHHHCCeEEEECcc
Confidence 7778888899999999886 45554332 6777777643 2 2478889999999999865
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
|.. ++++|+|++ +.+|+++++++|+++.+
T Consensus 307 ~~~-----------------------------------~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 307 FGL-----------------------------------HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp GTC-----------------------------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred CCC-----------------------------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 522 578999998 89999999999988764
No 48
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.97 E-value=2.4e-29 Score=257.13 Aligned_cols=326 Identities=12% Similarity=0.076 Sum_probs=243.8
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhc-cccCCCCCccchhhhhhHHHHHHHHHHHHHcCC-CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTT-NVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~~~~~~i~~t~g~t~a 115 (508)
++.++|+.+.... +++.+.+++.+.+.. .....+. ....++++++++++|+ +++ +|++|+|+|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~~~~l~~~la~~~g~~~~~--~i~~~~g~t~a 97 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV----------PSSEALRAKLKEVMQVPAGM--EVLLGNGSDEI 97 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC----------CCHHHHHHHHHHHHTCCTTC--EEEEEEHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC----------CcHHHHHHHHHHHhCCCCcc--eEEEcCCHHHH
Confidence 5789999877543 467777776554432 1111111 1156789999999999 677 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+++++.++ .++|++|++....|+++... ++..|.+++.+|.+.+..+ |+++++ +++
T Consensus 98 ~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~l--- 153 (367)
T 3euc_A 98 ISMLALAA-ARPGAKVMAPVPGFVMYAMS---AQFAGLEFVGVPLRADFTL---------------DRGAML--AAM--- 153 (367)
T ss_dssp HHHHHHHT-CCTTCEEEEEESCSCCSCHH---HHTTTCEEEEEECCTTSCC---------------CHHHHH--HHH---
T ss_pred HHHHHHHH-cCCCCEEEEcCCCHHHHHHH---HHHcCCeEEEecCCCCCCC---------------CHHHHH--HHh---
Confidence 99999998 68899999998888876654 4456999999999875555 678887 444
Q ss_pred CCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC--CeEEEEeccccCCCC--C-CCCCCCCCcEE
Q 010538 196 DPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG--RWMVLIDAAKGCVTQ--P-PDLSKYPVDFV 269 (508)
Q Consensus 196 ~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~--g~~vivD~a~~~g~~--~-~d~~~~~~D~~ 269 (508)
++ ++++|++++++||||.++|.+++.++++ +|+++ |+++|+|++|+.... . ..+...+.+++
T Consensus 154 ---~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~---------~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~ 221 (367)
T 3euc_A 154 ---AEHQPAIVYLAYPNNPTGNLFDAADMEAIVR---------AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLV 221 (367)
T ss_dssp ---HHHCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEE
T ss_pred ---hccCCCEEEEcCCCCCCCCCCCHHHHHHHHH---------hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEE
Confidence 33 6899999999999999999888887776 56669 999999999874221 1 12233456799
Q ss_pred EEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 270 VMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 270 ~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+.|+||+ + ++| +|++++++++++.+.+.. ...+.+....+++.++++.
T Consensus 222 ~~s~sK~-~-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~-- 271 (367)
T 3euc_A 222 MRTVSKL-G-LAGIRLGYVAGDPQWLEQLDKVR--------------------------PPYNVNVLTEATALFALEH-- 271 (367)
T ss_dssp EEECCCT-T-SCSCCEEEEEECHHHHHHHGGGC--------------------------CSSCCCHHHHHHHHHHHTT--
T ss_pred Eecchhh-c-ccccCceeeeeCHHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcC--
Confidence 9999998 6 445 799999988877665431 1234566667777767765
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
...++.+.+++.++++++.+.|+++ ++++++.+ . ++++++.++ +..++.+.|.++||.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~------~g~~~~~~-~--------~~~~~~~~~-------~~~~l~~~l~~~gi~ 329 (367)
T 3euc_A 272 VAVLDEQAAQLRAERSRVAEGMAAH------GGVTVFPS-A--------ANFLLARVP-------DAAQTFDRLLARKVL 329 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS------TTCEECCC-S--------SSEEEEECS-------CHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCcEECCC-C--------CeEEEEECC-------CHHHHHHHHHHCCeE
Confidence 2236888999999999999999987 36775432 2 678888876 224588889999999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++|..|... ..+++|+|++ |.+|+++++++|+++++
T Consensus 330 v~~~~~~~~~---------------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 330 IKNVSKMHPL---------------------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CEECGGGCGG---------------------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred EEECCccCCC---------------------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 9998766432 2689999988 99999999999988753
No 49
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.97 E-value=2.1e-29 Score=259.26 Aligned_cols=345 Identities=11% Similarity=0.063 Sum_probs=245.4
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
++++.|..+.... +++.+.+++.+.+.... ..|... ..++.+++.+.+++.+| ++++ +|++|+|+|+|
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~--~~~l~~~la~~l~~~~g~~~~~~--~i~~~~g~~~a 97 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLKVAA-----FGYESV--PAEYYKAVADWEEIEHRARPKED--WCVFASGVVPA 97 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-----CCCBCC--CHHHHHHHHHHHHHHHSCCCCGG--GEEEESCHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhcCc-----CCCCCC--CHHHHHHHHHHHHHHhCCCCCHH--HEEECCCHHHH
Confidence 5688888776443 46777777655432211 111111 35667788888888888 5666 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+. ++.. ..|+++++ ++++
T Consensus 98 ~~~~~~~l-~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~l~--~~l~- 157 (391)
T 3dzz_A 98 ISAMVRQF-TSPGDQILVQEPVYNMFYS---VIEGNGRRVISSDLIYENSKY-------------SVNWADLE--EKLA- 157 (391)
T ss_dssp HHHHHHHH-SCTTCEEEECSSCCHHHHH---HHHHTTCEEEECCCEEETTEE-------------ECCHHHHH--HHHT-
T ss_pred HHHHHHHh-CCCCCeEEECCCCcHHHHH---HHHHcCCEEEEeeeeecCCce-------------eecHHHHH--HHHh-
Confidence 99999998 6889999998877776544 4456799999999852 2211 11678888 5552
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCCC---Cc
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKYP---VD 267 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~~---~D 267 (508)
.+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+. |..+.++...+ .|
T Consensus 158 ----~~~~~~v~i~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d 224 (391)
T 3dzz_A 158 ----TPSVRMMVFCNPHNPIGYAWSEEEVKRIAE---------LCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKN 224 (391)
T ss_dssp ----STTEEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGG
T ss_pred ----ccCceEEEEECCCCCCCcccCHHHHHHHHH---------HHHHCCCEEEEecccccccCCCCCceehhhcCccccC
Confidence 257899999999999999977655555544 34449999999999985 33444554443 56
Q ss_pred --EEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 268 --FVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 268 --~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+++.|+||++| ++| +|+++++ +++.+.+.... .....++++...++++.++
T Consensus 225 ~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~ 280 (391)
T 3dzz_A 225 WVVSLISPSKTFN-LAALHAACAIIPNPDLRARAEESF-----------------------FLAGIGEPNLLAIPAAIAA 280 (391)
T ss_dssp GEEEEECSHHHHT-CTTTCCEEEECCSHHHHHHHHHHH-----------------------HHHTCSSCCTTHHHHHHHH
T ss_pred cEEEEEeChhhcc-ccchhheEEEECCHHHHHHHHHHH-----------------------HhhccCCCCHHHHHHHHHH
Confidence 99999999987 445 8999997 77766554331 1112234566667777777
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
++... ..++.+.+++.++++++.+.|++ + ++++++.+.. +.++++.++... .+..++.+.|
T Consensus 281 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~l 342 (391)
T 3dzz_A 281 YEEGH-DWLRELKQVLRDNFAYAREFLAKEV------PEVKVLDSNA--------SYLAWVDISALG---MNAEDFCKYL 342 (391)
T ss_dssp HHHCH-HHHHHHHHHHHHHHHHHHHHHHHHC------TTSEECCCCB--------SSEEEEECGGGC---SCHHHHHHHH
T ss_pred HhccH-HHHHHHHHHHHHHHHHHHHHHHhhC------CCcEEeccCc--------eEEEEEehhhcC---CCHHHHHHHH
Confidence 76532 23688899999999999999988 6 3688776543 566777776421 2345678888
Q ss_pred -hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 422 -SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 422 -~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++||.+++|..|... .++++|+|++ ++.++++++++.|+++++
T Consensus 343 ~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~ 387 (391)
T 3dzz_A 343 REKTGLIISAGNGYRGN---------------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVL 387 (391)
T ss_dssp HHHHCEECEESGGGCTT---------------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCchhhCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 5899999998766542 2589999999 699999999999998876
Q ss_pred hh
Q 010538 501 FS 502 (508)
Q Consensus 501 ~~ 502 (508)
.+
T Consensus 388 ~~ 389 (391)
T 3dzz_A 388 NL 389 (391)
T ss_dssp TC
T ss_pred Hh
Confidence 54
No 50
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.97 E-value=8.9e-31 Score=278.66 Aligned_cols=363 Identities=12% Similarity=0.010 Sum_probs=254.1
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccch-hhhhhHHHHHHHHHHHHHcCCCCCC--ceEEEcCChH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDI-SLATCDIVRAAREQVLDYFNASMKD--YKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~r~~la~~~~~~~~~--~~i~~t~g~t 113 (508)
.+.|.|. ++.+++++.+++++.+ .+.+.+ ++|++.++. +.....+.+.+++++++++|+++++ .+|++++|+
T Consensus 44 ~~~i~L~-a~e~~~~~~V~eA~~~-~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs- 120 (483)
T 1rv3_A 44 RVGLELI-ASENFASRAVLEALGS-CLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS- 120 (483)
T ss_dssp HSSEECC-TTCCCCCHHHHHHHTS-GGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-
T ss_pred hcCeEEE-cCCCCCCHHHHHHHHH-HHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-
Confidence 4678885 4566789999888755 444444 556654332 3344566778999999999998752 137888877
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHH-----HHHhcC--CeEEEEccC-CccCccccccccccccccccchhh
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-----YALSQG--AAAFAIDVE-EAVDNDGLSESLVTSTKISLLPIQ 185 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-----~~~~~G--~~v~~v~~~-~~~~~~~l~~~~~~~~~~~~d~~~ 185 (508)
+++.+++.++ .++||+|+++..+|+++..... .+...| .+++.++++ +++.+ |+++
T Consensus 121 ~an~~~~~al-l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~i---------------D~d~ 184 (483)
T 1rv3_A 121 PANFAVYTAL-VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYI---------------DYDR 184 (483)
T ss_dssp HHHHHHHHHH-TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSB---------------CHHH
T ss_pred HHHHHHHHHh-cCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcC---------------CHHH
Confidence 7888888888 7899999999999988753210 001113 344444445 34445 6888
Q ss_pred hhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC-
Q 010538 186 RRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY- 264 (508)
Q Consensus 186 l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~- 264 (508)
++ +++. .++|++|++ +++|++ .+.|+++|.++|++ +|+++++|++|+.|..+.++...
T Consensus 185 le--~~i~-----~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~------------~g~~livD~ah~~g~~~~~~~~~p 243 (483)
T 1rv3_A 185 LE--ENAR-----LFHPKLIIA-GTSCYS-RNLDYGRLRKIADE------------NGAYLMADMAHISGLVVAGVVPSP 243 (483)
T ss_dssp HH--HHHH-----HHCCSEEEE-CCSSCC-SCCCHHHHHHHHHH------------TTCEEEEECTTTHHHHHHTSSCCG
T ss_pred HH--HHHh-----hcCCcEEEE-eCCcCC-CcCCHHHHHHHHHH------------cCCEEEEEccchhcccccCCCCCC
Confidence 88 4442 157899999 888888 99999999999998 99999999999876554444444
Q ss_pred --CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 --PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 --~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
++|++++|+||+++||.| |+++++++... +. ..+|....+.. ...+.. .......|+++...++++.+|
T Consensus 244 ~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~--~~~g~~~~y~~-~~~~~~----~~~~~~~g~~~~~~iaal~~A 314 (483)
T 1rv3_A 244 FEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VD--PKTGKEILYNL-ESLINS----AVFPGLQGGPHNHAIAGVAVA 314 (483)
T ss_dssp GGTCSEEEEESSGGGCCCSC-EEEEEECSBCC----------CCBCCH-HHHHHH----HHTTTTCCSCCHHHHHHHHHH
T ss_pred CCCCcEEEecCcccCCCCCc-eEEEEcchhhh-hc--cccCcchhhHH-HHHhhh----hcCCcccCCccHHHHHHHHHH
Confidence 689999999998877998 99999987532 22 11111000000 000000 001112588899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+.+.+++.+.+++.++++++.+.|.++ |++++.+... ..++++.+.... ++..++.+.|.
T Consensus 315 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~v~~~~~g---~~~~~~~~~L~ 377 (483)
T 1rv3_A 315 LKQAMTPEFKEYQRQVVANCRALSAALVEL-------GYKIVTGGSD-------NHLILVDLRSKG---TDGGRAEKVLE 377 (483)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEEGGGGT---CCHHHHHHHHH
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHhc-------CCEeccCCCC-------CceEEEeccCCC---CCHHHHHHHHH
Confidence 998766568999999999999999999886 6888765321 456666764311 34456889999
Q ss_pred hCCCeec----cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC----HHHHHHHHHh
Q 010538 423 LSGIQLR----TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST----FEDAKVNRCS 494 (508)
Q Consensus 423 ~~gI~v~----~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~eev~~l~~~ 494 (508)
+.||.++ +|..|.. .++.+|||++.++| ++|+++++++
T Consensus 378 ~~gI~v~~~~~pg~~~~~----------------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~ 423 (483)
T 1rv3_A 378 ACSIACNKNTCPGDKSAL----------------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHF 423 (483)
T ss_dssp HTTEECEEECCSSCSCTT----------------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred hCCcEEecCCCCCCCcCC----------------------------------CCceEEeecCCcccCCCCHHHHHHHHHH
Confidence 9999998 6654321 25789999999888 9999999999
Q ss_pred hhhhhhh
Q 010538 495 SFDFVNF 501 (508)
Q Consensus 495 ~~~~~~~ 501 (508)
|.++++.
T Consensus 424 l~~~l~~ 430 (483)
T 1rv3_A 424 IHRGIEL 430 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 51
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=2e-29 Score=260.08 Aligned_cols=344 Identities=13% Similarity=0.083 Sum_probs=246.5
Q ss_pred CCeeeeCCCCCC----CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 40 GTVYLDHAGATL----YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 40 ~~iyld~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
+.-|+|.++..+ .++.+.+++.+.+. . +..+..............+++++.+++++|.+ + .|++++| ++|
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~-~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~a 115 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVE-Q-YGFGMASVRFICGTQTIHKELEKDISEFLGTD-D--TILYSSC-FDA 115 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHH-H-HCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCS-E--EEEESCH-HHH
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHH-H-hCCCCCCcCccccCchHHHHHHHHHHHHHCCC-c--EEEECch-HHH
Confidence 445677666543 35777777655443 2 22222111111223566888999999999986 3 4666655 779
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ .++|+.|+++...|+++... ++..|.+++.+|..+ +++++ +.+++.
T Consensus 116 ~~~~l~~~-~~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~d--------------------~~~l~--~~l~~~ 169 (399)
T 3tqx_A 116 NGGLFETL-LGPEDAIISDELNHASIIDG---IRLCKAQRYRYKNNA--------------------MGDLE--AKLKEA 169 (399)
T ss_dssp HHTTHHHH-CCTTCEEEEETTCCHHHHHH---HHSCCSEEEEECTTC--------------------TTHHH--HHHHHH
T ss_pred HHHHHHHh-cCCCCEEEECCcccHHHHHH---HHHcCCceeEeCCCC--------------------HHHHH--HHHHhh
Confidence 99988888 68899999999888876654 445689999988632 23333 222110
Q ss_pred CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCC------CC--CCCc
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDL------SK--YPVD 267 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~------~~--~~~D 267 (508)
.....++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|..+.+. .. .+.|
T Consensus 170 ~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~d 237 (399)
T 3tqx_A 170 DEKGARFKLIATDGVFSMDGIIADLKSICDLADK------------YNALVMVDDSHAVGFIGENGRGTPEYCGVADRVD 237 (399)
T ss_dssp HTTTCSSEEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCS
T ss_pred hccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCchHHhhCCCCCCc
Confidence 0111378999999999999999999999999998 99999999999866543321 11 2579
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++.|+||++++|.| |+++.+++.++.+..... .. ...++++...++++.++++.+.
T Consensus 238 i~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~l~~~~ 294 (399)
T 3tqx_A 238 ILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSR---------------------PY-LFSNTVAPVIVATSLKVLELLK 294 (399)
T ss_dssp EEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCH---------------------HH-HSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEecchHhcccCce-EEEEcCHHHHHHHHHhCc---------------------ce-eccCCCcHHHHHHHHHHHHHHh
Confidence 999999999887777 999999988776654311 01 1245677777888888888764
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
.+.+++++++.++++++.+.|+++ ++++..+ . ++++++.+++. .+..++.+.|.++||.
T Consensus 295 -~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~-~--------~~~~~~~~~~~----~~~~~~~~~l~~~gi~ 353 (399)
T 3tqx_A 295 -TEGPQLRKQLQENSRYFRAGMEKL-------GFQLVPG-N--------HPIIPVMLGDA----QLATNMADHLLQEGIY 353 (399)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCC-S--------SSEEEEEEECH----HHHHHHHHHHHHTTEE
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHc-------CCCcCCC-C--------CCEEEEEeCCH----HHHHHHHHHHHHCCCE
Confidence 457999999999999999999987 4655522 2 78888888753 1234588888889999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
++++..+..+. ..+++|++++.++|.+|++++++.|+++++.++
T Consensus 354 v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 354 VVGFSYPVVPM--------------------------------GKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLG 397 (399)
T ss_dssp CCEECTTTSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred EeeeCCCCCCC--------------------------------CCceEEEEeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99764332111 257999999999999999999999999887654
No 52
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-29 Score=267.05 Aligned_cols=348 Identities=13% Similarity=0.043 Sum_probs=256.5
Q ss_pred CCeeeeCCCCCC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHH
Q 010538 40 GTVYLDHAGATL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATA 114 (508)
Q Consensus 40 ~~iyld~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~ 114 (508)
+..|.+....+. .++.+.+.+.+.+......++.. +........+.+++++++++++|++ ++ ++++|+|+|+
T Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~la~~~g~~~~~~--~~~~~~ggt~ 137 (497)
T 3mc6_A 61 HTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLH-PDVFPAVRKMESEVVSMVLRMFNAPSDTG--CGTTTSGGTE 137 (497)
T ss_dssp CCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTC-TTTCHHHHHHHHHHHHHHHHHTTCCTTTC--CEEEESSHHH
T ss_pred CCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCC-cccChHHHHHHHHHHHHHHHHhCCCCCCC--eEEEcCcHHH
Confidence 455555433332 23555555444332211223322 2223345677788999999999998 55 7999999999
Q ss_pred HHHHHHhhcCC----CCC---CeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhh
Q 010538 115 ALKLVGEAFPW----SHQ---SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 115 al~~~~~~l~~----~~g---~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+.+++.++.. ++| ++|+++...|+++....+ ..|++++.||.+. ++.+ |++++
T Consensus 138 a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~---~~G~~~~~v~~~~~~~~~---------------d~~~l 199 (497)
T 3mc6_A 138 SLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAY---YFGMKLRHVELDPTTYQV---------------DLGKV 199 (497)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHH---HSCCEEEEECBCTTTCSB---------------CTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHH---HcCCeEEEEecCcccCcC---------------CHHHH
Confidence 99999988721 023 799999988988765544 4699999999876 4555 67888
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-----------
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----------- 255 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----------- 255 (508)
+ +++ ++++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+
T Consensus 200 ~--~~i------~~~~~~v~~~~p~nptG~~~~l~~i~~la~~------------~g~~livD~a~~~~~~~f~~~~~~~ 259 (497)
T 3mc6_A 200 K--KFI------NKNTVLLVGSAPNFPHGIADDIEGLGKIAQK------------YKLPLHVDSCLGSFIVSFMEKAGYK 259 (497)
T ss_dssp G--GGC------CSSEEEEEEETTCTTTCCCCSCTTTTTHHHH------------TTCCEEEETTTTHHHHGGGTTTTCC
T ss_pred H--HHH------hhCCEEEEEECCCCCCCcCCCHHHHHHHHHH------------hCCEEEEECcchhhhhhhhhhhccc
Confidence 8 555 4578999999999999999999999999998 99999999998732
Q ss_pred CC-CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccc----cccCceEEecccchhhhhhccCccccccCCC
Q 010538 256 TQ-PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNT----YFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 256 ~~-~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
.. +++....++|++++|+||++++|.|+|+++++++.+...... +.++.. ......|+
T Consensus 260 ~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~g~ 322 (497)
T 3mc6_A 260 NLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLY-----------------GSPTLAGS 322 (497)
T ss_dssp SCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCB-----------------CCSSSCSS
T ss_pred CCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCc-----------------CCcCcccC
Confidence 22 466777789999999999875588999999998776543221 111100 11122456
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
.+...+++++++++.+...|++++.+++.++++++.+.|++ + ++++++.++. .++++|..++
T Consensus 323 ~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~------~g~~~~~~~~--------~~~v~~~~~~--- 385 (497)
T 3mc6_A 323 RPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI------PDLDIMGNPR--------YSVISFSSKT--- 385 (497)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTCEECSCCC--------SSEEEEECTT---
T ss_pred CcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCC--------eeEEEEeCCC---
Confidence 66666888999999888888899999999999999999998 5 3788886643 6888888654
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
++..++.+.|.++||.++.+.. +..+|++++ .+|.+|++
T Consensus 386 --~~~~~l~~~L~~~Gi~v~~~~~--------------------------------------~~~~ri~~~-~~t~e~i~ 424 (497)
T 3mc6_A 386 --LNIHELSDRLSKKGWHFNALQK--------------------------------------PVALHMAFT-RLSAHVVD 424 (497)
T ss_dssp --TTHHHHHHHHHTTTCBCEECCS--------------------------------------SCCEEEECC-TTTTCTHH
T ss_pred --CCHHHHHHHHHhCCEEEecCCC--------------------------------------CCeEEEEEe-CCCHHHHH
Confidence 3445689999999999876421 346899999 78999999
Q ss_pred HHHHhhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFSQ 503 (508)
Q Consensus 490 ~l~~~~~~~~~~~~ 503 (508)
++++.|++.++.+.
T Consensus 425 ~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 425 EICDILRTTVQELK 438 (497)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886653
No 53
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.97 E-value=6e-29 Score=255.61 Aligned_cols=333 Identities=17% Similarity=0.093 Sum_probs=244.7
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++.++|+.+.... +++.+.+++.+.+ .. .+ .|... ....++++.++++++++++ +|++|+|+|+|+.
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~--~~---~y~~~----~~~~~l~~~la~~~~~~~~--~v~~~~g~~~a~~ 92 (381)
T 1v2d_A 25 LGAVNLGQGFPSNPPPPFLLEAVRRAL-GR--QD---QYAPP----AGLPALREALAEEFAVEPE--SVVVTSGATEALY 92 (381)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHHT-TT--SC---SCCCT----TCCHHHHHHHHHHHTSCGG--GEEEESSHHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHH-HH--hc---CCCCC----CCCHHHHHHHHHhcCCChh--hEEEcCChHHHHH
Confidence 4678888776543 4667777665543 22 11 12111 1246789999999999988 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC---CccCccccccccccccccccchhhhhcCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE---EAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~---~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++.++ ..+|++|+++...|+++... ++..|.+++.+|.+ ++..+ |+++++ +++
T Consensus 93 ~~~~~~-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~~---------------d~~~l~--~~l-- 149 (381)
T 1v2d_A 93 VLLQSL-VGPGDEVVVLEPFFDVYLPD---AFLAGAKARLVRLDLTPEGFRL---------------DLSALE--KAL-- 149 (381)
T ss_dssp HHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECEEETTEEEC---------------CHHHHH--TTC--
T ss_pred HHHHHh-CCCCCEEEEcCCCchhHHHH---HHHcCCEEEEEeCCCCCccCCc---------------CHHHHH--Hhc--
Confidence 999998 67899999999888887654 45579999999986 33334 688998 555
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---CCCCCCC--CCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---TQPPDLS--KYPV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---~~~~d~~--~~~~ 266 (508)
++++++|++++++||||.++|. ++|.++|++ +|+++|+|++|+.+ ..+.++. ..+.
T Consensus 150 ----~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~g~~~~~~~~~~~~~ 213 (381)
T 1v2d_A 150 ----TPRTRALLLNTPMNPTGLVFGERELEAIARLARA------------HDLFLISDEVYDELYYGERPRRLREFAPER 213 (381)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCEEEEECTTTTCBSSSCCCCHHHHCTTT
T ss_pred ----CcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHH------------cCCEEEEEcCccccccCCCCCCHHHhcCCC
Confidence 4578999999999999999984 555555655 99999999999853 3334443 3478
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
|+++.|+||++| ++| +|++++++++++.+.... ....++.+....+++.++++
T Consensus 214 ~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~ 268 (381)
T 1v2d_A 214 TFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAGMR------------------------QWTSFSAPTPLQAGVAEALK 268 (381)
T ss_dssp EEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHHHH------------------------HHHTSSCCHHHHHHHHHHHH
T ss_pred EEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHH------------------------hhcccCCCcHHHHHHHHHHh
Confidence 999999999998 657 899999988876654321 11123456666677777777
Q ss_pred HHH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 345 LIN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 345 ~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
... ..+++++.+++.++++++.+.|++. +++++.+.. +.++++.+++. . +.+.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~---~-----~~~~l~~ 325 (381)
T 1v2d_A 269 LARREGFYEALREGYRRRRDLLAGGLRAM-------GLRVYVPEG--------TYFLMAELPGW---D-----AFRLVEE 325 (381)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCSB--------SSEEEEECTTC---C-----HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEecCCCc--------ceEEEEecChH---h-----HHHHHHh
Confidence 542 3457889999999999999999885 577765542 57888887643 1 6778889
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
+||.+++|..|.... ...+++|||++. |.++++++++.|+++++..+
T Consensus 326 ~gi~v~~g~~~~~~~-------------------------------~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 326 ARVALIPASAFYLED-------------------------------PPKDLFRFAFCK--TEEELHLALERLGRVVNSPR 372 (381)
T ss_dssp TCEECEEGGGGCSSS-------------------------------CCTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred CCEEEecchHhCCCC-------------------------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcc
Confidence 999999987554310 125789999997 99999999999998876543
No 54
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=4.8e-29 Score=257.93 Aligned_cols=342 Identities=13% Similarity=0.072 Sum_probs=245.0
Q ss_pred CCCeeeeCCCCCCC----CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATLY----SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++..|+|.++..+. ++.+.+++.+.+ .. ++.+...............++++.+++++|++ + .|++++ +|+
T Consensus 43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~-~~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~--~i~~~s-Gs~ 116 (401)
T 1fc4_A 43 DGSHVINFCANNYLGLANHPDLIAAAKAGM-DS-HGFGMASVRFICGTQDSHKELEQKLAAFLGME-D--AILYSS-CFD 116 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHH-HH-HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-E--EEEESC-HHH
T ss_pred CCccEEEeeccCcccccCCHHHHHHHHHHH-HH-hCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC-c--EEEeCC-hHH
Confidence 45667777665433 677877775543 22 22222111111112456788999999999987 4 565555 577
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++..++.++ ..+|++|+++...|+++... ++..|++++.+|.. |+++++ +.+++
T Consensus 117 a~~~~~~~~-~~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~--------------------d~~~l~--~~l~~ 170 (401)
T 1fc4_A 117 ANGGLFETL-LGAEDAIISDALNHASIIDG---VRLCKAKRYRYANN--------------------DMQELE--ARLKE 170 (401)
T ss_dssp HHHTTHHHH-CCTTCEEEEETTCCHHHHHH---HHTSCSEEEEECTT--------------------CHHHHH--HHHHH
T ss_pred HHHHHHHHH-cCCCCEEEEcchhHHHHHHH---HHHcCCceEEECCC--------------------CHHHHH--HHHHH
Confidence 999888888 67889999999888776544 45679999888742 234444 33311
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-C--------CCCCCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-P--------PDLSKYP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~--------~d~~~~~ 265 (508)
......++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.|.. + +++.. +
T Consensus 171 ~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~------------~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~ 237 (401)
T 1fc4_A 171 AREAGARHVLIATDGVFSMDGVIANLKGVCDLADK------------YDALVMVDDSHAVGFVGENGRGSHEYCDVMG-R 237 (401)
T ss_dssp HHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHH------------TTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-C
T ss_pred hhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHH------------cCCEEEEECcccccccCCCCCccHHHcCCCc-C
Confidence 00001168999999999999999999999999998 8999999999976554 2 34433 6
Q ss_pred CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+|+++.|+||+++++.| |++++++++++.+.+... ... ..++.+...++++.++++.
T Consensus 238 ~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~---------------------~~~-~~~~~~~~~~~a~~~~l~~ 294 (401)
T 1fc4_A 238 VDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR---------------------PYL-FSNSLAPAIVAASIKVLEM 294 (401)
T ss_dssp CSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH---------------------HHH-HSCCCCHHHHHHHHHHHHH
T ss_pred CcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc---------------------Cce-eCCCCCHHHHHHHHHHHHH
Confidence 79999999999943667 999999888776654310 011 1346677778888888888
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
+.+ .+.+.+++.++++++.+.|+++ +++++ +.. ++++++.+++. .+..++.+.|.++|
T Consensus 295 ~~~--~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~~~----~~~~~l~~~l~~~g 352 (401)
T 1fc4_A 295 VEA--GSELRDRLWANARQFREQMSAA-------GFTLA-GAD--------HAIIPVMLGDA----VVAQKFARELQKEG 352 (401)
T ss_dssp HHT--CHHHHHHHHHHHHHHHHHHHHT-------TCCBC-CSS--------SSEEEEEEECH----HHHHHHHHHHHHTT
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHHc-------CCccc-CCC--------CCEEEEEcCCh----HHHHHHHHHHHHCC
Confidence 755 5788999999999999999886 45555 322 78999998642 22345888888899
Q ss_pred CeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 426 IQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 426 I~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
|.+++|..|..+. ..+++|++++.++|.+|++++++.|+++++.+
T Consensus 353 i~v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 353 IYVTGFFYPVVPK--------------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EECCEECTTSSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cEEeeecCCCCCC--------------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999886553321 15789999999999999999999999887654
No 55
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.97 E-value=3.9e-29 Score=258.53 Aligned_cols=326 Identities=15% Similarity=0.105 Sum_probs=239.1
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+++.+.+++.+.+. .. .+....+..........+++++.+++++|. + ++++|+|+|+|+.+++.++ ..+|++|
T Consensus 58 ~~~~v~~a~~~~~~-~~-~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~--~v~~~~ggt~a~~~~~~~~-~~~gd~V 130 (398)
T 3a2b_A 58 TDTRIIKAAQDALE-KY-GTGCAGSRFLNGTLDIHVELEEKLSAYVGK--E--AAILFSTGFQSNLGPLSCL-MGRNDYI 130 (398)
T ss_dssp GCHHHHHHHHHHHH-HH-CSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--S--EEEEESSHHHHHHHHHHHS-SCTTCEE
T ss_pred CCHHHHHHHHHHHH-Hc-CCCCCCcCcccCCcHHHHHHHHHHHHHhCC--C--cEEEECCHHHHHHHHHHHH-hCCCCEE
Confidence 67778777755442 21 111111222222356788899999999997 4 7999999999999999998 6889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+++...|+++.... +..|.+++.+|.. |+++++ +++++.. .+++++|++++++
T Consensus 131 ~~~~p~~~~~~~~~---~~~g~~~~~v~~~--------------------d~~~l~--~~l~~~~--~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 131 LLDERDHASIIDGS---RLSFSKVIKYGHN--------------------NMEDLR--AKLSRLP--EDSAKLICTDGIF 183 (398)
T ss_dssp EEETTCCHHHHHHH---HHSSSEEEEECTT--------------------CHHHHH--HHHHTSC--SSSCEEEEEESBC
T ss_pred EECCccCHHHHHHH---HHcCCceEEeCCC--------------------CHHHHH--HHHHhhc--cCCceEEEEeCCC
Confidence 99998888776554 4469999998862 345555 4442210 1268999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCC-C----CCcEEEEeccccccCCCcc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSK-Y----PVDFVVMSFYKIFGYPTGL 283 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~-~----~~D~~~~S~~K~~g~P~G~ 283 (508)
||||.+.|+++|.++|++ +|+++|+|++|+.+.. ..++.+ . ++|+++.|+||+++ |.|
T Consensus 184 nptG~~~~~~~l~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G- 249 (398)
T 3a2b_A 184 SMEGDIVNLPELTSIANE------------FDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG- 249 (398)
T ss_dssp TTTCCBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-
T ss_pred CCCCCccCHHHHHHHHHH------------cCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-
Confidence 999999999999999998 8999999999986632 222211 1 36999999999999 888
Q ss_pred eEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 010538 284 GALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGM 363 (508)
Q Consensus 284 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~ 363 (508)
|++++++++++.+.+.... ....++++..+.+++.++++.+.. +++++++++++++
T Consensus 250 G~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~ 305 (398)
T 3a2b_A 250 GFVAGDADVIDFLKHNARS----------------------VMFSASMTPASVASTLKALEIIQN--EPEHIEKLWKNTD 305 (398)
T ss_dssp EEEEECHHHHHHHHHHCHH----------------------HHSSBCCCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhccc----------------------ceecCCCCHHHHHHHHHHHHHHhh--CHHHHHHHHHHHH
Confidence 9999998887766543100 012244556666566677776543 5788899999999
Q ss_pred HHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhc
Q 010538 364 YVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYL 443 (508)
Q Consensus 364 ~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~ 443 (508)
++.+.|+++ +++++.+. ++++++.++.. .+..++.+.|.++||.+++|..|..+.
T Consensus 306 ~l~~~L~~~-------g~~~~~~~---------g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~~~----- 360 (398)
T 3a2b_A 306 YAKAQLLDH-------GFDLGATE---------SPILPIFIRSN----EKTFWVTKMLQDDGVFVNPVVSPAVPA----- 360 (398)
T ss_dssp HHHHHHHHT-------TCCBCSCC---------SSEEEEECCCH----HHHHHHHHHHHHTTEECEEECTTTSCG-----
T ss_pred HHHHHHHhc-------CCCcCCCC---------CCEEEEEcCCH----HHHHHHHHHHHHCCcEEEeeCCCCCCC-----
Confidence 999999886 45554321 68888887531 233457888888899999987664321
Q ss_pred CCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 444 GLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 444 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
..+++|+|++.++|.+|++++++.|+++++.
T Consensus 361 ---------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 361 ---------------------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ---------------------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 2578999999999999999999999988754
No 56
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.97 E-value=4.6e-29 Score=256.62 Aligned_cols=351 Identities=10% Similarity=0.074 Sum_probs=251.7
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASM 101 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~ 101 (508)
.|+...+ +|.. ++.+.|..+... ++++.+.+++.+.+ .. ....+.. ....+.+++++.+++++| +++
T Consensus 21 ~~d~~~~-~~~~--~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~ 90 (391)
T 4dq6_A 21 KWSEMEK-KYGT--NDLLPMWVADMDFKAAPCIIDSLKNRL-EQ----EIYGYTT--RPDSYNESIVNWLYRRHNWKIKS 90 (391)
T ss_dssp HHHCHHH-HHSC--SCSEECCSSSCSSCCCHHHHHHHHHHH-TT----CCCCCBC--CCHHHHHHHHHHHHHHHCCCCCG
T ss_pred eeeeccc-ccCC--CCceeccccCCCCCCCHHHHHHHHHHH-hC----CCCCCCC--CCHHHHHHHHHHHHHHhCCCCcH
Confidence 3666665 6752 678999987655 44677777765544 22 1111221 235677889999999999 667
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCcccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~ 179 (508)
+ +|++|+|+|+|+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+ .++..
T Consensus 91 ~--~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~------------- 151 (391)
T 4dq6_A 91 E--WLIYSPGVIPAISLLINEL-TKANDKIMIQEPVYSPFNS---VVKNNNRELIISPLQKLENGNY------------- 151 (391)
T ss_dssp G--GEEEESCHHHHHHHHHHHH-SCTTCEEEECSSCCTHHHH---HHHHTTCEEEECCCEECTTSCE-------------
T ss_pred H--HeEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCCHHHHH---HHHHcCCeEEeeeeeecCCCce-------------
Confidence 7 8999999999999999998 6789999998877776554 445579999999987 33321
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----C
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----V 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g 255 (508)
..|+++++ +++ .+ +++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+. |
T Consensus 152 ~~d~~~l~--~~l------~~-~~~v~i~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~g 213 (391)
T 4dq6_A 152 IMDYEDIE--NKI------KD-VKLFILCNPHNPVGRVWTKDELKKLGD---------ICLKHNVKIISDEIHSDIILKK 213 (391)
T ss_dssp ECCHHHHH--HHC------TT-EEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCTT
T ss_pred EeeHHHHH--HHh------hc-CCEEEEECCCCCCCcCcCHHHHHHHHH---------HHHHcCCEEEeeccccccccCC
Confidence 12688888 555 34 899999999999999987666665544 34459999999999986 3
Q ss_pred CCCCCCCCCCCc-----EEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 256 TQPPDLSKYPVD-----FVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 256 ~~~~d~~~~~~D-----~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
..+.++...+.| +++.|+||++| ++| +|++++++ ++.+.+.... ....
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~-----------------------~~~~ 269 (391)
T 4dq6_A 214 HKHIPMASISKEFEKNTITCMAPTKTFN-IAGLQSSYVVLPDEKDYKLLDDAF-----------------------TRID 269 (391)
T ss_dssp CCCCCGGGSCHHHHHTEEEEECSHHHHT-CGGGCCEEEECCSHHHHHHHHHHH-----------------------HHTT
T ss_pred CCccCHHHcCccccCcEEEEEechhhcc-CcccceEEEEeCCHHHHHHHHHHH-----------------------Hhhc
Confidence 334455444333 88999999987 445 79999886 6666554431 1112
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
.++++...++++.++++...+ .++++.++++++++++.+.|++ + ++++++.+.. +.++++.++.
T Consensus 270 ~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~~~~~~ 334 (391)
T 4dq6_A 270 IKRNNCFSLVATEASYNNGES-WLESFLEYLESNIDFAIKYINENM------PKLKVRKPEG--------TYLLWVDFSA 334 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHC------TTSEECCCSB--------SSEEEEECGG
T ss_pred CCCCCHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHhhC------CCCEecCCCc--------cEEEEEEhhh
Confidence 346677777777777765322 3688889999999999999987 5 3688776543 5566688764
Q ss_pred CCCCccCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 407 PDGSWFGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
.. .+..++.+.|.++ ||.+++|..|... .++++|+|++ ++.
T Consensus 335 ~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~--~~~ 376 (391)
T 4dq6_A 335 LG---LSDEELESILVQKGKVALNQGNSFGIG---------------------------------GSGYQRINLA--CPR 376 (391)
T ss_dssp GC---CCHHHHHHHHHHTTCEECEEGGGGCTT---------------------------------CTTEEEEECC--SCH
T ss_pred cC---CCHHHHHHHHHHhCCEEeeCchhhCCC---------------------------------CCCeEEEEEc--CCH
Confidence 21 2345688888877 9999998765432 2589999999 699
Q ss_pred HHHHHHHHhhhhhh
Q 010538 486 EDAKVNRCSSFDFV 499 (508)
Q Consensus 486 eev~~l~~~~~~~~ 499 (508)
++++++++.|++.+
T Consensus 377 ~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 377 SMLEEALIRIKNAI 390 (391)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
No 57
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=2.6e-28 Score=255.40 Aligned_cols=339 Identities=12% Similarity=-0.002 Sum_probs=246.8
Q ss_pred CeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 41 TVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
.-|+|.++.. .+++.+++++.+.+.....+.+.+... ........++++.+++++|++ +.++++++++|+
T Consensus 64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~--~G~~~~~~~l~~~la~~~g~~----~~i~~~sGs~a~ 137 (427)
T 2w8t_A 64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRML--NGTFHDHMEVEQALRDFYGTT----GAIVFSTGYMAN 137 (427)
T ss_dssp EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTT--TCCCHHHHHHHHHHHHHHTCS----EEEEESCHHHHH
T ss_pred ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccc--cCCcHHHHHHHHHHHHHhCCC----ceEEecCcHHHH
Confidence 3355555543 257888887765443211122222211 223466788999999999985 345555666799
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
..++.++ .++|+.|+++...|+++...++ ..|.+++.+|.. |+++++ +++++.
T Consensus 138 ~~al~~l-~~~gd~vl~~~~~h~~~~~~~~---~~g~~~~~~~~~--------------------d~~~le--~~l~~~- 190 (427)
T 2w8t_A 138 LGIISTL-AGKGEYVILDADSHASIYDGCQ---QGNAEIVRFRHN--------------------SVEDLD--KRLGRL- 190 (427)
T ss_dssp HHHHHHH-SCTTCEEEEETTCCHHHHHHHH---HSCSEEEEECTT--------------------CHHHHH--HHHHTS-
T ss_pred HHHHHHh-cCCCCEEEECCcccHHHHHHHH---HcCCeeEEeCCC--------------------CHHHHH--HHHHhc-
Confidence 8888888 6789999999999988776544 458898888742 355555 444321
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---------CCCCCCCCc
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---------PDLSKYPVD 267 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---------~d~~~~~~D 267 (508)
...++++|++++++|+||.+.|+++|.++|++ +|+++|+|++|+.+... +++. .++|
T Consensus 191 -~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~------------~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~d 256 (427)
T 2w8t_A 191 -PKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKK------------HGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQID 256 (427)
T ss_dssp -CSSSCEEEEEESEETTTTEECCHHHHHHHHHH------------TTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCS
T ss_pred -cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCchHhhcCCC-cCCc
Confidence 01278999999999999999999999999998 99999999999987654 4443 3689
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+||++| +.| |++++++++++.+.+... .. ...++.+..+++++.++++.+.
T Consensus 257 i~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~~---------------------~~-~~~~~~~~~~~aa~~~al~~~~ 312 (427)
T 2w8t_A 257 FVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLACR---------------------PY-IFTASLPPSVVATATTSIRKLM 312 (427)
T ss_dssp EEEEESSSTTC-SCC-EEEEECCTTGGGGGGTCH---------------------HH-HSSCCCCHHHHHHHHHHHHHHT
T ss_pred EEEecchhhhc-cCC-CEEEeCHHHHHHHHHhcc---------------------cc-cccCCCCHHHHHHHHHHHHHHh
Confidence 99999999999 777 999999888766654310 00 1135677777888888888865
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+ ++++++++.++++++.+.|+++ ++++..++. .++++++.+++. .+..++.+.|.++||.
T Consensus 313 ~--~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~ 372 (427)
T 2w8t_A 313 T--AHEKRERLWSNARALHGGLKAM-------GFRLGTETC-------DSAIVAVMLEDQ----EQAAMMWQALLDGGLY 372 (427)
T ss_dssp S--CHHHHHHHHHHHHHHHHHHHHH-------TCEESCSSC-------CSSEEEEEESSH----HHHHHHHHHHHHTTEE
T ss_pred c--CHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCC-------CCCEEEEEECCH----HHHHHHHHHHHHCCeE
Confidence 3 6889999999999999999886 577764431 168899988642 1234578888888999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++++..|..+. ..+.+|++++.++|.+|++++++.|+++++.+
T Consensus 373 v~~~~~~~~~~--------------------------------~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 373 VNMARPPATPA--------------------------------GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp CEEECTTTSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EeeeCCCCCCC--------------------------------CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99876554321 25789999999999999999999999887543
No 58
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.97 E-value=4e-29 Score=256.35 Aligned_cols=341 Identities=11% Similarity=0.077 Sum_probs=243.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
++++.|..+.... +++.+.+++.+.+....+..+. . ..++.+++.+.+++.+| ++++ +|++|+|+|+|
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~--~~~~~~~l~~~l~~~~g~~~~~~--~v~~~~g~~~a 94 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHPIFGYTL-----P--PENIGDIICNWTKKQYNWDIQKE--WIVFSAGIVPA 94 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCCCCCCC-----C--CTTHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcCCCCCCC-----C--CHHHHHHHHHHHHHHhCCCCChh--hEEEcCCHHHH
Confidence 5688888776443 4677777765544321111111 1 34567788889999988 5666 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC-ccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD-NDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~-~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++++.++ .++|++|+++...|+++. ..++..|.+++.+|.+.... . ..|+++++ +++
T Consensus 95 ~~~~~~~l-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~l~--~~l-- 153 (383)
T 3kax_A 95 LSTSIQAF-TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTY-------------AIDFEHLE--KQF-- 153 (383)
T ss_dssp HHHHHHHH-CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEE-------------ECCHHHHH--HHH--
T ss_pred HHHHHHHh-CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcE-------------EEcHHHHH--HHh--
Confidence 99999998 688999998887776654 44556799999999864322 1 11678888 544
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC-----C
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY-----P 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~-----~ 265 (508)
++++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. |..+.++... +
T Consensus 154 ----~~~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 220 (383)
T 3kax_A 154 ----QQGVKLMLLCSPHNPIGRVWKKEELTKLGS---------LCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAA 220 (383)
T ss_dssp ----TTTCCEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHT
T ss_pred ----CcCCeEEEEeCCCCCCCcCcCHHHHHHHHH---------HHHHCCCEEEEEccccccccCCCCceeHhhcCccccC
Confidence 467899999999999999999887777754 34459999999999986 3333444333 4
Q ss_pred CcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
.++++.|+||++| ++| +|++++ ++++.+.+..... ....++++...++++.++
T Consensus 221 ~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~a~~~~ 276 (383)
T 3kax_A 221 RTITCMAPSKTFN-IAGLQASIIIIPNEKLRQAFTSIQY-----------------------RQGFHGLNIFAYTAMQSA 276 (383)
T ss_dssp TEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHHHHHH-----------------------HTTCCCCCHHHHHHHHHH
T ss_pred cEEEEEEChhhcc-CcchhheEEEeCCHHHHHHHHHHHh-----------------------hcccCCCCHHHHHHHHHH
Confidence 4589999999998 556 799988 4666665544311 112245677767776666
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA 421 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L 421 (508)
++...+ .++++.+++.++++++.+.|++ + ++++++.+.. +.++++.++... .+..++.+.|
T Consensus 277 l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~l 338 (383)
T 3kax_A 277 YTECND-WLNEIRFYIEDNAKFACEYIKDHI------PTLSVMKPEG--------SFLLWIDCSALN---LSQDERTKLL 338 (383)
T ss_dssp TTTCHH-HHHHHHHHHHHHHHHHHHHHHHHC------TTCEECCCSB--------SSEEEEECGGGC---CCHHHHHHHH
T ss_pred HHhhHH-HHHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCc--------eEEEEEEccccC---CCHHHHHHHH
Confidence 654222 3678889999999999999987 5 3688776543 556667776421 2345678888
Q ss_pred h-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 422 S-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 422 ~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
. ++||.+++|..|... ..+++|+|++ ++.++++++++.|++++
T Consensus 339 ~~~~gi~v~~g~~~~~~---------------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 339 EEKGKIIVEPGEKYGLG---------------------------------GEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp HHTSCEECEESGGGCTT---------------------------------CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred HhhCCEEeECchhhcCC---------------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 6 789999998766442 2589999999 59999999999988765
No 59
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=6.2e-29 Score=260.03 Aligned_cols=356 Identities=11% Similarity=0.021 Sum_probs=242.8
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccc-cCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNV-YGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~ 110 (508)
++++.|+.+....+ ++.+.+++.+.+.... ...+. . ....++|+.++++++ ++++ +|++|+
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~----~g~~~lr~~la~~~~~~~g~~~~~~--~i~~t~ 112 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN-----L----DGLPELKQEASRFAKLFVNIDIPAR--ACVPTV 112 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC-----T----TCCHHHHHHHHHHHHHHHCCCCCGG--GEEEES
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC-----C----CChHHHHHHHHHHHHHhhCCCCCcc--cEEEeC
Confidence 57899988775544 6667776655443211 11111 1 112455666666666 5666 899999
Q ss_pred ChHHHHHHHHhhcC-CCCCC--eEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Cccccccccccccccccchhhh
Q 010538 111 GATAALKLVGEAFP-WSHQS--SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 111 g~t~al~~~~~~l~-~~~g~--~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+|+|+++++.++. .++|+ +|+++...|+++.. .++..|.+++.+|++.++ .+ |++++
T Consensus 113 g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~---------------d~~~l 174 (437)
T 3g0t_A 113 GSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKL---QCRILGQKFESFDLFEYRGEK---------------LREKL 174 (437)
T ss_dssp HHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH---HHHHHTCCCEEEEGGGGCTTH---------------HHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH---HHHHcCCEEEEEeecCCCCcc---------------CHHHH
Confidence 99999999999983 17888 99988766665544 444569999999986433 23 67888
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCC---
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPP--- 259 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~--- 259 (508)
+ ++++ ++++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+.. ..++
T Consensus 175 ~--~~l~-----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------~a~~~~~~li~De~~~~~~~~~~~~~~~~ 238 (437)
T 3g0t_A 175 E--SYLQ-----TGQFCSIIYSNPNNPTWQCMTDEELRIIGE---------LATKHDVIVIEDLAYFGMDFRKDYSHPGE 238 (437)
T ss_dssp H--HHHT-----TTCCCEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCCTTSCCCSTTS
T ss_pred H--HHHh-----cCCceEEEEeCCCCCCCCcCCHHHHHHHHH---------HHHHCCcEEEEEcchhhcccCCCcCcccc
Confidence 8 5542 457899999999999999999666555444 344499999999999752 2222
Q ss_pred -----CCCC-CCCcEEEEeccccccCCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 260 -----DLSK-YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 260 -----d~~~-~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
++.. .+.++++.|+||++| ++| +|++++++++++ .+.....+.+.... ...+. ........++
T Consensus 239 ~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~ 310 (437)
T 3g0t_A 239 PLYQPSVANYTDNYILALSSSKAFS-YAGQRIGVLMISGKLYEREYPDLEESFGRLRF---GEALS----SSALYALSSG 310 (437)
T ss_dssp SCCCCCGGGTCSCEEEEEESTTTTS-CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBH---HHHHH----TTHHHHHHSS
T ss_pred cchhhccCCCCCcEEEEEcCccCCC-CccceeEEEEECHHHhhhhhhcccccccccch---hHHHH----HHHHhhhcCC
Confidence 3322 467799999999998 556 899999988876 52211110000000 00000 0011222356
Q ss_pred CChhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe------cCCCCCcccCCCCceEEE
Q 010538 331 ASFLSIASIRHGFNLINSL--TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY------GTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~--g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~ 402 (508)
++....+++.++++..... .++.+.+++.++++++.+.|+++ +++++ .++. .+.++++
T Consensus 311 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~~~~~~-------~~~~~~~ 376 (437)
T 3g0t_A 311 ATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-------GFNIVYDKDGNEPLA-------DGFYFTV 376 (437)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-------TEEESSCEETTEECC-------SSSEEEE
T ss_pred CCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCEEeccccCCCCCc-------eeEEEEE
Confidence 6777777777777764421 27899999999999999999987 68877 3312 2788898
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+++ .+..++.+.|.++||.+++|..|... .++++|||++ +
T Consensus 377 ~~~~-----~~~~~l~~~L~~~gi~v~~~~~~~~~---------------------------------~~~~iRis~~-~ 417 (437)
T 3g0t_A 377 GYKG-----MDSSKLIEKFVRYGMCAITLKTTGSK---------------------------------RNEAMRICTS-L 417 (437)
T ss_dssp EETT-----CCHHHHHHHHHHTTEECEESTTTTCC---------------------------------CTTCEEEECS-S
T ss_pred ecCC-----CCHHHHHHHHHHcCeEEeeccccCCC---------------------------------CCCEEEEEEe-c
Confidence 8873 34456888998999999998766432 1378999999 4
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
.|.+|+++++++|+++++
T Consensus 418 ~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 418 LPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp SCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 599999999999998764
No 60
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=6e-29 Score=255.70 Aligned_cols=337 Identities=14% Similarity=0.078 Sum_probs=239.8
Q ss_pred CCCeeeeCCCCC----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGAT----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
++..|+|.+++. ++++.+.+++.+.+......++.+.+..+ ......++++.+++++|++ + .+++++ +|+
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g--~~~~~~~l~~~la~~~g~~-~--~i~~~s-Gt~ 110 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSG--YSVVHQALEEELAEWLGYS-R--ALLFIS-GFA 110 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTC--CCHHHHHHHHHHHHHHTCS-E--EEEESC-HHH
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccC--ChHHHHHHHHHHHHHhCCC-c--EEEeCC-cHH
Confidence 456688877743 35777877765544221111222222212 2456788999999999985 3 455544 589
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++.+++.++ .++|+.|+++...|+++...+ +..|.+++.+|.. |+++++ +.+++
T Consensus 111 a~~~~~~~~-~~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~~--------------------d~~~l~--~~l~~ 164 (384)
T 1bs0_A 111 ANQAVIAAM-MAKEDRIAADRLSHASLLEAA---SLSPSQLRRFAHN--------------------DVTHLA--RLLAS 164 (384)
T ss_dssp HHHHHHHHH-CCTTCEEEEETTCCHHHHHHH---HTSSSEEEEECTT--------------------CHHHHH--HHHHS
T ss_pred HHHHHHHHh-CCCCcEEEEcccccHHHHHHH---HHcCCCEEEeCCC--------------------CHHHHH--HHHHh
Confidence 999999988 678899999998888766544 4469999988842 244555 44322
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC---CC---CCCCCCcE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---PD---LSKYPVDF 268 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---~d---~~~~~~D~ 268 (508)
..+++++|++++++||||.++|+++|.++|++ +|+++|+|++|+.+... .. ....+.|+
T Consensus 165 ---~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di 229 (384)
T 1bs0_A 165 ---PCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ------------HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPEL 229 (384)
T ss_dssp ---CCSSCEEEEEESBCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSE
T ss_pred ---cCCCCeEEEEeCCCCCCCCccCHHHHHHHHHH------------cCcEEEEECCcccceecCCCCchHHhcCCCCcE
Confidence 12347999999999999999999999999998 99999999999876532 11 11135799
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
++.|+||+++ |.| |++++++++++.+.+.... | ...++++...++++.++++.+.+
T Consensus 230 ~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~~------------~----------~~~~~~~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 230 LVVTFGKGFG-VSG-AAVLCSSTVADYLLQFARH------------L----------IYSTSMPPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEESSSTTS-SCC-EEEEECHHHHHHHHHHCHH------------H----------HSSBCCCHHHHHHHHHHHHHHHS
T ss_pred EEeeccchhh-ccC-cEEEeCHHHHHHHHHhchh------------h----------hcCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999 888 9999998887765542100 0 01124677777777888887753
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
...+++.++++++++++.+.|+++ ++++.. .. ++++++.++.. .+..++.+.|.++||.+
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~-~~--------~~~~~~~~~~~----~~~~~l~~~l~~~gi~v 345 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDL-------PFTLAD-SC--------SAIQPLIVGDN----SRALQLAEKLRQQGCWV 345 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-------SCEECS-CC--------SSBCCEEEESH----HHHHHHHHHHHHTTEEC
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc-------CCcccC-CC--------CCEEEEEeCCH----HHHHHHHHHHHHCCcEE
Confidence 235788999999999999999886 466653 22 67788887631 22345888888899999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++|..+..+. ..+++|++++.++|.+|+++++++|+++
T Consensus 346 ~~~~~~~~~~--------------------------------~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 346 TAIRPPTVPA--------------------------------GTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CEECTTSSCT--------------------------------TCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred EeecCCCCCC--------------------------------CCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 9876432111 2578999999999999999999998764
No 61
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.97 E-value=2.1e-28 Score=252.15 Aligned_cols=346 Identities=12% Similarity=0.093 Sum_probs=241.2
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N-- 98 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~-- 98 (508)
+..+.+ .+... ++.++|+.+.... +++.+.+++.+.+.... ..|..... ..++++.+++++ |
T Consensus 15 ~~~~~~-~~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~~g----~~~l~~~la~~~~~~~g~~ 83 (389)
T 1gd9_A 15 IRKLFD-IAAGM-KDVISLGIGEPDFDTPQHIKEYAKEALDKGL-----THYGPNIG----LLELREAIAEKLKKQNGIE 83 (389)
T ss_dssp HHHHHH-HHHTC-SSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-----CSCCCTTC----CHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHhhh-cCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-----CCCCCCCC----cHHHHHHHHHHHHHHhCCC
Confidence 444444 44444 5789999887653 56777777655442211 11221111 234555555555 8
Q ss_pred CCCCCce-EEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCcccccccccc
Q 010538 99 ASMKDYK-CIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVT 175 (508)
Q Consensus 99 ~~~~~~~-i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~ 175 (508)
++++ + |++|+|+++|+.+++.++ ..+|++|+++...|+++.... +..|.+++.+|.+.. ..+
T Consensus 84 ~~~~--~~v~~~~g~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~~--------- 148 (389)
T 1gd9_A 84 ADPK--TEIMVLLGANQAFLMGLSAF-LKDGEEVLIPTPAFVSYAPAV---ILAGGKPVEVPTYEEDEFRL--------- 148 (389)
T ss_dssp CCTT--TSEEEESSTTHHHHHHHTTT-CCTTCEEEEEESCCTTHHHHH---HHHTCEEEEEECCGGGTTCC---------
T ss_pred CCCC--CeEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHCCCEEEEeccCCccCCCC---------
Confidence 4666 7 999999999999999998 678899999998888876554 345999999998742 223
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|
T Consensus 149 ------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~------------~~~~li~De~~ 202 (389)
T 1gd9_A 149 ------NVDELK--KYV------TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVE------------HDLIVISDEVY 202 (389)
T ss_dssp ------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCEEEEECTT
T ss_pred ------CHHHHH--Hhc------CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEehhh
Confidence 678888 555 346899999999999999997 5555555655 99999999999
Q ss_pred cCCCC----CCCCCC----CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 253 GCVTQ----PPDLSK----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 253 ~~g~~----~~d~~~----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
+.+.. +.++.. .+.|+++.|+||++| ++| +|++++++++++.+.+...++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~------------------- 262 (389)
T 1gd9_A 203 EHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVAAPSWIIERMVKFQMYN------------------- 262 (389)
T ss_dssp TTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHTTT-------------------
T ss_pred hhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-CcccceEEEEECHHHHHHHHHHHhhh-------------------
Confidence 87543 233332 357899999999998 667 799999988877665432111
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.++.+....+++.++++.... .+++++.+++.++++++.+.|+++ ++++..+.. +.+++
T Consensus 263 -----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~ 322 (389)
T 1gd9_A 263 -----ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-------GLPTVKPKG--------AFYIF 322 (389)
T ss_dssp -----TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCCB--------TTEEC
T ss_pred -----ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc-------CCeecCCCe--------eeEEE
Confidence 133455555555656653222 146888899999999999999886 465554432 55677
Q ss_pred EEeeCCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
+.++... .+..++.+.|. ++||.+++|..|... ..+++|||++
T Consensus 323 ~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRi~~~ 366 (389)
T 1gd9_A 323 PRIRDTG---LTSKKFSELMLKEARVAVVPGSAFGKA---------------------------------GEGYVRISYA 366 (389)
T ss_dssp CBCGGGT---CCHHHHHHHHHHHTCEECEEGGGGCGG---------------------------------GTTBEEEECC
T ss_pred EeccCCC---CCHHHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCeEEEEec
Confidence 7775310 23455778876 899999998755431 1578999999
Q ss_pred CCCCHHHHHHHHHhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~ 501 (508)
. +.++++++++.|+++++.
T Consensus 367 ~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 367 T--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp S--CHHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHh
Confidence 5 899999999999887654
No 62
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.96 E-value=7.6e-29 Score=253.83 Aligned_cols=324 Identities=13% Similarity=0.088 Sum_probs=234.1
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~g 111 (508)
++.++|+.+.... +++.+.+++.+.+.... ..|.... ...++++.++++++ ++++ +|++|+|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~~----~~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g 97 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-----THYTDSR----GILELREKISELYKDKYKADIIPD--NIIITGG 97 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-----CSCCCTT----CCHHHHHHHHHHHHHHSSCCCCGG--GEEEESS
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-----cCCCCCC----CCHHHHHHHHHHHHHHhCCCCChh--hEEECCC
Confidence 5789999887754 46777777655442211 1121111 12445566666553 5666 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ .++|++|+++...|+++... ++..|.+++.+| + |+++++ ++
T Consensus 98 ~~~a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~------~---------------d~~~l~--~~ 150 (370)
T 2z61_A 98 SSLGLFFALSSI-IDDGDEVLIQNPCYPCYKNF---IRFLGAKPVFCD------F---------------TVESLE--EA 150 (370)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESSCCTHHHHH---HHHTTCEEEEEC------S---------------SHHHHH--HH
T ss_pred hHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHH---HHHcCCEEEEeC------C---------------CHHHHH--Hh
Confidence 999999999998 67889999999888876554 445699998888 2 467777 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCC----C
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSK----Y 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~----~ 264 (508)
+ .+++++|++++++||||.++|.+ |.++|++ +|+++|+|++|+.+.. +.++.. .
T Consensus 151 l------~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~------------~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (370)
T 2z61_A 151 L------SDKTKAIIINSPSNPLGEVIDRE-IYEFAYE------------NIPYIISDEIYNGLVYEGKCYSAIEFDENL 211 (370)
T ss_dssp C------CSSEEEEEEESSCTTTCCCCCHH-HHHHHHH------------HCSEEEEECTTTTCBSSSCCCCGGGTCTTC
T ss_pred c------ccCceEEEEcCCCCCcCcccCHH-HHHHHHH------------cCCEEEEEcchhhcccCCCCcCHHHccCCC
Confidence 4 34789999999999999999999 9999997 8999999999986543 334332 3
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+.|+++.|+||++| ++| +|++++++++++.+.+...+ ..++.+....+++.++
T Consensus 212 ~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~a~~~~ 266 (370)
T 2z61_A 212 EKTILINGFSKLYA-MTGWRIGYVISNDEIIEAILKLQQN------------------------LFISAPTISQYAALKA 266 (370)
T ss_dssp SSEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHH------------------------HTSSSCHHHHHHHGGG
T ss_pred CcEEEEecChhccC-CccceEEEEEECHHHHHHHHHHHhh------------------------cccCCCHHHHHHHHHH
Confidence 67899999999998 667 89999999887766543111 1234566666666666
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+.+..++++.+++.++++++.+.|+++ +++++.+.. +.++++.+++ +..++.+.|.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~------~~~~~~~~l~ 325 (370)
T 2z61_A 267 FEKETEREINSMIKEFDRRRRLVLKYVKDF-------GWEVNNPIG--------AYYVFPNIGE------DGREFAYKLL 325 (370)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCBCCCCCB--------TTEECCBCSS------CHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHc-------CCeecCCCc--------ceEEEEecCC------CHHHHHHHHH
Confidence 654123346788899999999999999886 455554432 5667767654 2345777775
Q ss_pred -hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 -LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 -~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+++|..|... ..+++|+|++ ++.++++++++.|+++++
T Consensus 326 ~~~gi~v~~g~~f~~~---------------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 326 KEKFVALTPGIGFGSK---------------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHCEECEEGGGGCGG---------------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred HhCCEEEeCchhhCCC---------------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 789999998655321 1578999999 699999999999887753
No 63
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.96 E-value=1.9e-28 Score=256.47 Aligned_cols=340 Identities=12% Similarity=0.024 Sum_probs=240.6
Q ss_pred CCCeeeeCCCCC-----CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-----CCCCCceEEE
Q 010538 39 NGTVYLDHAGAT-----LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-----ASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-----~~~~~~~i~~ 108 (508)
+++|+|+.+... ++++.+.+++.+.+.... ...|.. .....++++.++++++ ++++ +|++
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~----~~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~--~v~~ 123 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGK----YNGYAP----SIGFLSSREEIASYYHCPEAPLEAK--DVIL 123 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCC----SSSCCC----TTCCHHHHHHHHHHHCBTTBCCCGG--GEEE
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCc----CCCCCC----CCCcHHHHHHHHHHHhhcCCCCChH--HEEE
Confidence 356999988743 677888887755443211 111211 1225678899999998 6777 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+|+|+.+++.++ .++|++|+++...|+++. ..++..|++++.+|.+..... ..|+++++
T Consensus 124 t~g~t~al~~~~~~l-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~- 185 (427)
T 3dyd_A 124 TSGCSQAIDLCLAVL-ANPGQNILVPRPGFSLYK---TLAESMGIEVKLYNLLPEKSW-------------EIDLKQLE- 185 (427)
T ss_dssp ESSHHHHHHHHHHHH-CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEEEGGGTT-------------EECHHHHH-
T ss_pred ecCcHHHHHHHHHHh-cCCCCEEEEcCCCchhHH---HHHHHcCCEEEEEecccccCC-------------CCCHHHHH-
Confidence 999999999999998 578899998876665544 455567999999988642221 12688999
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL 261 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~ 261 (508)
+++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+. |....++
T Consensus 186 -~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~~i~Deay~~~~~~g~~~~~~ 246 (427)
T 3dyd_A 186 -YLI------DEKTACLIVNNPSNPCGSVFSKRHLQKILAVAAR------------QCVPILADEIYGDMVFSDCKYEPL 246 (427)
T ss_dssp -SSC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCCEEEECTTTTCBCSSCCCCCG
T ss_pred -HHh------ccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH------------CCCEEEEEcCchhhccCCCcCccH
Confidence 665 456899999999999999999 6666666665 9999999999985 3333444
Q ss_pred CCCCCc---EEEEeccccccCCCc--ceEEEEec-------hhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 262 SKYPVD---FVVMSFYKIFGYPTG--LGALIMRN-------DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 262 ~~~~~D---~~~~S~~K~~g~P~G--~G~l~~~~-------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
...+.+ +++.|+||.|+ ++| +|++++++ ++.+.+... . ....
T Consensus 247 ~~~~~~~~vi~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~i~~~l~~~-----------------------~--~~~~ 300 (427)
T 3dyd_A 247 ATLSTDVPILSCGGLAKRWL-VPGWRLGWILIHDRRDIFGNEIRDGLVKL-----------------------S--QRIL 300 (427)
T ss_dssp GGGCSSCCEEEEEESTTTSS-CGGGCCEEEEEECSTTSSHHHHHHHHHHH-----------------------H--HHHC
T ss_pred HHhCCCCcEEEEeeccccCC-CcCcceEEEEecCcchhhHHHHHHHHHHH-----------------------H--hccC
Confidence 444443 77889999988 447 89999985 333332221 0 0124
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC-
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD- 408 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 408 (508)
+++....+++.++++......++++.+++.++++++.+.|+++ ++++++.+.. +.++++.++...
T Consensus 301 ~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~p~~--------g~~~~~~l~~~~~ 366 (427)
T 3dyd_A 301 GPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI------PGLRPVRPSG--------AMYLMVGIEMEHF 366 (427)
T ss_dssp CSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCSB--------TTEEEEEECGGGC
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCe--------eEEEEEecCHhhc
Confidence 5666667777777764333346888899999999999999987 4788776654 678888876210
Q ss_pred CCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 409 GSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 409 ~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
....+..++.+.| +++||.+.+|..|.. ++++|||++ ++.++
T Consensus 367 ~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-----------------------------------~~~iRis~~--~~~e~ 409 (427)
T 3dyd_A 367 PEFENDVEFTERLVAEQSVHCLPATCFEY-----------------------------------PNFIRVVIT--VPEVM 409 (427)
T ss_dssp TTCSSHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEESC--SCHHH
T ss_pred CCCCCHHHHHHHHHHHCCEEEECCcccCC-----------------------------------CCeEEEEEC--CCHHH
Confidence 0012334466555 689999998865422 578999987 79999
Q ss_pred HHHHHHhhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNFS 502 (508)
Q Consensus 488 v~~l~~~~~~~~~~~ 502 (508)
++++++.|.++++..
T Consensus 410 i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 410 MLEACSRIQEFCEQH 424 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 64
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.96 E-value=2.6e-29 Score=255.01 Aligned_cols=333 Identities=11% Similarity=0.015 Sum_probs=237.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+|||++..+++++.+.+++.+.. .. +. .+.......+++++++++++|++++ +|++|+|+|+|+.+
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~-~~-~~-------~~~g~~~~~~~~~~~l~~~~g~~~~--~v~~~~g~t~a~~~ 81 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDN-MT-QH-------AGYGQDSHCAKAARLIGELLERPDA--DVHFISGGTQTNLI 81 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHT-TC-CC-------CSTTCSHHHHHHHHHHHHHHTCTTS--EEEEESCHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHH-hh-cc-------ccccccHHHHHHHHHHHHHhCCCCc--cEEEeCCchHHHHH
Confidence 67999999999988999988876643 21 11 1112346688899999999999888 89999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC-CC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER-DP 197 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~-~~ 197 (508)
++.++ .++|++|+++...|+++... ..++..|.+++.+|.+ +..+ |+++++ +++++. ..
T Consensus 82 ~~~~~-~~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~---------------d~~~l~--~~l~~~~~~ 141 (359)
T 1svv_A 82 ACSLA-LRPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKL---------------RVADIE--SALHENRSE 141 (359)
T ss_dssp HHHHH-CCTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCC---------------CHHHHH--HHHHHSCST
T ss_pred HHHHH-hCCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCee---------------cHHHHH--HHHHHHHhc
Confidence 99998 67889999999888877553 1245579999999986 3334 577777 555321 01
Q ss_pred CCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccc---cCCCCCCCCCC----CCCc
Q 010538 198 AGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAK---GCVTQPPDLSK----YPVD 267 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~---~~g~~~~d~~~----~~~D 267 (508)
..+++++|+++++ |+||.++| +++|.++|++ +|+++|+|++| +.|..+.+... ...|
T Consensus 142 ~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d 208 (359)
T 1svv_A 142 HMVIPKLVYISNT-TEVGTQYTKQELEDISASCKE------------HGLYLFLDGARLASALSSPVNDLTLADIARLTD 208 (359)
T ss_dssp TSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHH------------HTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCS
T ss_pred cCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHH------------hCCEEEEEccchhhhhcCCCcchhhhhhhhcCC
Confidence 1235899999998 79999999 6667777776 99999999999 65666655443 3579
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
++++|+||+++ |.|+|++++++++++.+.+....++. .+ ..+.....++. ..+.
T Consensus 209 ~~~~s~~K~g~-~~~~g~l~~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~---~~l~ 262 (359)
T 1svv_A 209 MFYIGATKAGG-MFGEALIILNDALKPNARHLIKQRGA-------------------LM---AKGWLLGIQFE---VLMK 262 (359)
T ss_dssp EEEEECTTTTC-SSCEEEEECSGGGCTTHHHHHHHTTC-------------------CC---TTTHHHHHHHH---HHTS
T ss_pred EEEEecccCCC-CCceEEEEEcccHHHHHHHHHhcCCc-------------------cc---ccchhhHHHHH---HHHh
Confidence 99999999866 88899999998887666543211110 00 01112222222 2334
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CC
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GI 426 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI 426 (508)
+.+++++.+++.++++++.+.| +. ++++++.+.. ++++++.++. ++.+.|.++ ||
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~~L-~~------~~~~~~~~~~--------~~~~~~~~~~---------~~~~~l~~~~gi 318 (359)
T 1svv_A 263 DNLFFELGAHSNKMAAILKAGL-EA------CGIRLAWPSA--------SNQLFPILEN---------TMIAELNNDFDM 318 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-HH------TTCCBSSCCS--------SSEECBEEEH---------HHHHHHTTTEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHHh-cc------CCeEEccCCc--------cceEEEEcCH---------HHHHHHHHhcCE
Confidence 4456788999999999999999 54 3677765543 6777777652 377788777 99
Q ss_pred eeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 427 QLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 427 ~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+.... + ..++++|+++++.+|.+|+++++++|+++++-
T Consensus 319 ~v~~~~----~--------------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 319 YTVEPL----K--------------------------------DGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp EEEEEE----T--------------------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred EEEecc----c--------------------------------CCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 982210 0 02578999999999999999999999987653
No 65
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.96 E-value=2.4e-28 Score=261.90 Aligned_cols=307 Identities=13% Similarity=0.014 Sum_probs=240.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCC--CCceE--EEcCChHHHHHHHHhhcCCCCC--------CeEEEecccccchHHHHHHH
Q 010538 81 ATCDIVRAAREQVLDYFNASM--KDYKC--IFTSGATAALKLVGEAFPWSHQ--------SSYMYTMENHNSVLGIREYA 148 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~--~~~~i--~~t~g~t~al~~~~~~l~~~~g--------~~vl~~~~~h~s~~~~~~~~ 148 (508)
....+.+++++++++++|+++ + ++ ++|+|+|+|+.+++.++. .++ ++|+++...|+++....+.
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~--~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~- 211 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGG--TVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFDKAAQY- 211 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTS--CCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCCCccC--CcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHHHHHHH-
Confidence 345667778899999999974 4 56 999999999999998883 333 8999999999887655544
Q ss_pred HhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHc
Q 010538 149 LSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKK 228 (508)
Q Consensus 149 ~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~ 228 (508)
.|++++.||.+.++.+ |+++++ +++ ++++++|++++++|+||.+.|+++|.++|+
T Consensus 212 --~G~~v~~v~~~~~~~~---------------d~~~Le--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~ 266 (514)
T 3mad_A 212 --FGIKLVRTPLDADYRA---------------DVAAMR--EAI------TPNTVVVAGSAPGYPHGVVDPIPEIAALAA 266 (514)
T ss_dssp --HTCEEEEECBCTTSCB---------------CHHHHH--HHC------CTTEEEEEEETTCTTTCCCCCHHHHHHHHH
T ss_pred --cCCeeEEeeeCCCCCC---------------CHHHHH--HHh------ccCCEEEEEeCCCCCCccccCHHHHHHHHH
Confidence 4999999999876666 688998 555 457899999999999999999999999999
Q ss_pred CCccccccCCCCCCCeEEEEeccccCCC-----------CCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhc
Q 010538 229 NPERILEISPFSKGRWMVLIDAAKGCVT-----------QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLK 297 (508)
Q Consensus 229 ~~~~~~~~~~~~~~g~~vivD~a~~~g~-----------~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~ 297 (508)
+ +|+++|+|++|+.+. .+++....++|++++|+||++++|.|+|+++++++......
T Consensus 267 ~------------~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~ 334 (514)
T 3mad_A 267 E------------HGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQ 334 (514)
T ss_dssp H------------HTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTT
T ss_pred H------------hCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccc
Confidence 8 899999999987542 25666777899999999998655888999999988765433
Q ss_pred cccc----cCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 298 NTYF----SGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 298 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
.... ++.. ......|+.+...++++.++++.+...+++++.+++.++++++.+.|+++
T Consensus 335 ~~~~~~~~~~~~-----------------~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~- 396 (514)
T 3mad_A 335 YFIAADWPGGLY-----------------FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI- 396 (514)
T ss_dssp CEEESSCTTCSE-----------------EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cccccccCCCcc-----------------cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 2211 1110 11123567777778889999998888788999999999999999999987
Q ss_pred CCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 374 HENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
++++++.++ .++++|...+. +..++.+.|.++||.+ .|..|
T Consensus 397 -----~g~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~L~~~Gi~v-~g~~~------------------- 437 (514)
T 3mad_A 397 -----PSLKILGDP---------LWVIAVASDEL-----NIYQVMEEMAGRGWRL-NGLHR------------------- 437 (514)
T ss_dssp -----TTCEESSCC---------SSEEEEECSSS-----CHHHHHHHHHTTTCBC-EEETT-------------------
T ss_pred -----CCeEEeCCC---------eEEEEEeCCCC-----CHHHHHHHHHhcCCEe-ccCCC-------------------
Confidence 478887654 35788876442 3456889999999988 33211
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCC-CCHHHHHHHHHhhhhhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYM-STFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t~eev~~l~~~~~~~~~~~~ 503 (508)
++.+|+++... ++.++++++++.|++.++.++
T Consensus 438 ------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 438 ------------------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp ------------------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46799999855 567999999999999887654
No 66
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.96 E-value=8.2e-29 Score=264.88 Aligned_cols=368 Identities=12% Similarity=0.020 Sum_probs=245.1
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCC-ccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHS-QSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al 116 (508)
...||++..++..++.++..++..+. |+.. .+..+.....+.+++++++++++|++ ++ +++||+|+|+|+
T Consensus 92 ~p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~--~~~~t~ggtea~ 164 (504)
T 2okj_A 92 HPRFFNQLSTGLDIIGLAGEWLTSTA-----NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG--DGIFSPGGAISN 164 (504)
T ss_dssp CTTEESSSSCCCCHHHHHHHHHHHHH-----CCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC--EEEEESSHHHHH
T ss_pred CCCEEEEccCCCCHHHHHHHHHHHhh-----ccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCC--CEEEeCCcHHHH
Confidence 46799998777644444444444332 2222 23334445566777889999999998 66 899999999999
Q ss_pred HHHHhhcCC-------CCC-----C-eEEEecccccchHHHHHHHHhcCC-eEEEEccCCccCccccccccccccccccc
Q 010538 117 KLVGEAFPW-------SHQ-----S-SYMYTMENHNSVLGIREYALSQGA-AAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 117 ~~~~~~l~~-------~~g-----~-~vl~~~~~h~s~~~~~~~~~~~G~-~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
.+++.++.. ++| + +|+++...|+++....+.+. .|. +++.||.+.++.+ |
T Consensus 165 ~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g-~g~~~v~~v~~~~~~~~---------------d 228 (504)
T 2okj_A 165 MYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALG-FGTDNVILIKCNERGKI---------------I 228 (504)
T ss_dssp HHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT-SCGGGEEEECBCTTSCB---------------C
T ss_pred HHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcC-CCcccEEEEecCCCCCC---------------C
Confidence 998887632 134 5 78999999999877665542 133 8999998766666 6
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC----
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP---- 258 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~---- 258 (508)
+++++ ++|.+....+.+|++|++++++|+||.+.|+++|.++|++ +|+++|+|++++.+..+
T Consensus 229 ~~~L~--~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~------------~g~~lhvD~a~~~~~~~~~~~ 294 (504)
T 2okj_A 229 PADFE--AKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK------------YNLWLHVDAAWGGGLLMSRKH 294 (504)
T ss_dssp HHHHH--HHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGGGCTTT
T ss_pred HHHHH--HHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHH------------cCCEEEEehhhhhHHHhCHhh
Confidence 78887 5553211112368999999999999999999999999998 89999999999887653
Q ss_pred -CCCCCC-CCcEEEEeccccccCCCcceEEEEech-hHhhh----ccccccCceE-EecccchhhhhhccCccccccCCC
Q 010538 259 -PDLSKY-PVDFVVMSFYKIFGYPTGLGALIMRND-AAKLL----KNTYFSGGTV-AASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 259 -~d~~~~-~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~~l----~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
..+... ++|++++|+|||+++|.|+|+++++++ .++.. .+.+.+++.. ....+...+ ..+.+.
T Consensus 295 ~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~r 365 (504)
T 2okj_A 295 RHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK---------AIQCGR 365 (504)
T ss_dssp GGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGG---------SSCSSC
T ss_pred HhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccC---------CCCCCC
Confidence 233322 689999999999988989999999874 54431 2233232210 000000001 011111
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC--
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-- 408 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 408 (508)
. + ....++++++.+...|++++.+++.++++++.+.|++. ++++++.+..+ ..++++|+.....
T Consensus 366 r-~-~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~p------~~~~v~f~~~~~~~~ 431 (504)
T 2okj_A 366 H-V-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR------EEFEMVFNGEP------EHTNVCFWYIPQSLR 431 (504)
T ss_dssp B-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------TTEEESSSSCC------SSSCEEEEECCGGGS
T ss_pred C-c-cHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEecCCC------CeEEEEEEEeCcccc
Confidence 1 1 12233444555555678999999999999999999987 47999873211 1567778763211
Q ss_pred C----Cc----c--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 409 G----SW----F--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 409 ~----~~----~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
+ .. + ....+.+.|.++|+.+..+..+ .+ ..+++|++
T Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~---------------------------------~~-~~~~lRis 477 (504)
T 2okj_A 432 GVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQ---------------------------------GD-KANFFRMV 477 (504)
T ss_dssp SCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEE---------------------------------TT-EEEEEEEC
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEE---------------------------------CC-ceEEEEEE
Confidence 0 00 0 0235777888888653321100 00 13689999
Q ss_pred cC-CCCCHHHHHHHHHhhhhhhhh
Q 010538 479 FG-YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 479 ~~-~~~t~eev~~l~~~~~~~~~~ 501 (508)
++ .++|.+||+++++.|+++.+.
T Consensus 478 ~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 478 ISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Confidence 96 999999999999999887654
No 67
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.96 E-value=6.9e-28 Score=248.42 Aligned_cols=338 Identities=12% Similarity=0.040 Sum_probs=230.6
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.+.|+.+.... +++.+.+++.+.+... ...|.......++.+++.+.+....|+ +++ +|++|+|+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-----~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~g~~~a 103 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQG-----KTKYAPPAGIPELREALAEKFRRENGLSVTPE--ETIVTVGGSQA 103 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-----CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGG--GEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcC-----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCChH--HEEEcCChHHH
Confidence 5788998876543 3566666665543211 112221111233333344444433453 566 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+.+ ..+ |+++++ +++
T Consensus 104 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l- 161 (385)
T 1b5p_A 104 LFNLFQAI-LDPGDEVIVLSPYWVSYPE---MVRFAGGVVVEVETLPEEGFVP---------------DPERVR--RAI- 161 (385)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTHHHH---HHHHTTCEEEEEECCGGGTTCC---------------CHHHHH--TTC-
T ss_pred HHHHHHHh-cCCCCEEEEcCCCchhHHH---HHHHcCCEEEEeecCcccCCCC---------------CHHHHH--Hhc-
Confidence 99999998 6889999999887776554 44557999999998742 233 688998 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCCC--CCcE
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSKY--PVDF 268 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~~--~~D~ 268 (508)
++++++|++++++||||.++|.+++.++++ +|+++|++||+|++++.... ..++..+ +.++
T Consensus 162 -----~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i 227 (385)
T 1b5p_A 162 -----TPRTKALVVNSPNNPTGAVYPKEVLEALAR---------LAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTL 227 (385)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEE
T ss_pred -----CCCCEEEEEeCCCCCCCCCcCHHHHHHHHH---------HHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEE
Confidence 456899999999999999999555544444 33349999999999875322 2333333 5689
Q ss_pred EEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH-
Q 010538 269 VVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL- 345 (508)
Q Consensus 269 ~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~- 345 (508)
++.|+||++| ++| +|++++++++++.+.+.... ...+.+.....++.++++.
T Consensus 228 ~~~s~SK~~~-~~G~RiG~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~ 282 (385)
T 1b5p_A 228 TVNGAAKAFA-MTGWRIGYACGPKEVIKAMASVSRQ------------------------STTSPDTIAQWATLEALTNQ 282 (385)
T ss_dssp EEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHT------------------------TTCSCCHHHHHHHHHHHHCH
T ss_pred EEEechhhcC-CcccceEEEEeCHHHHHHHHHHHhh------------------------ccCCCCHHHHHHHHHHHhCC
Confidence 9999999999 668 89999998887766543111 1112344444455556642
Q ss_pred --HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh
Q 010538 346 --INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL 423 (508)
Q Consensus 346 --~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~ 423 (508)
..+ .+++++++++++++++.+.|+++ ++++..+.+ +.++++.++.. + .+..++.+.|.+
T Consensus 283 ~~~~~-~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~-~--~~~~~l~~~l~~ 343 (385)
T 1b5p_A 283 EASRA-FVEMAREAYRRRRDLLLEGLTAL-------GLKAVRPSG--------AFYVLMDTSPI-A--PDEVRAAERLLE 343 (385)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCCSB--------TTEEEEECTTT-C--SSHHHHHHHHHH
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eEEEEEecCCC-C--CCHHHHHHHHHH
Confidence 222 36788899999999999999876 466554432 56777777531 1 344568888889
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+||.+++|..|.. ++++|||++ ++.++++++++.|+++++
T Consensus 344 ~gv~v~~g~~f~~-----------------------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 344 AGVAVVPGTDFAA-----------------------------------FGHVRLSYA--TSEENLRKALERFARVLG 383 (385)
T ss_dssp TTEECEESGGGTC-----------------------------------TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred CCeEEecccccCC-----------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 9999999865421 468999998 799999999999887653
No 68
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.96 E-value=3.2e-28 Score=250.60 Aligned_cols=342 Identities=10% Similarity=-0.002 Sum_probs=235.3
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~a 115 (508)
++.++|+.+... .+++.+.+++.+.+ .. ....|.......++.+++.+.+.+.+|.+ ++. +|++|+|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~-~v~~~~g~~~a 103 (386)
T 1u08_A 30 HQAINLSQGFPDFDGPRYLQERLAHHV-AQ----GANQYAPMTGVQALREAIAQKTERLYGYQPDADS-DITVTAGATEA 103 (386)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHH-HT----TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTT-TEEEESSHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHH-Hh----hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CEEEcCChHHH
Confidence 578999988764 35677777765543 22 11122211112333444444444445753 321 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+|++|+++...|+++... ++..|.+++.+|.+.. ..+ |+++++ +++
T Consensus 104 ~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l-- 160 (386)
T 1u08_A 104 LYAAITAL-VRNGDEVICFDPSYDSYAPA---IALSGGIVKRMALQPPHFRV---------------DWQEFA--ALL-- 160 (386)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECCTTTCCC---------------CHHHHH--HHC--
T ss_pred HHHHHHHh-CCCCCEEEEeCCCchhHHHH---HHHcCCEEEEeecCcccCcC---------------CHHHHH--Hhh--
Confidence 99999998 67889999999888876654 4456999999998652 333 688888 554
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCC----CCCC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLS----KYPV 266 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~----~~~~ 266 (508)
++++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+. |....++. ..+.
T Consensus 161 ----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 161 ----SERTRLVILNTPHNPSATVWQQADFAALWQ---------AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp ----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTT
T ss_pred ----cccCEEEEEeCCCCCCCccCCHHHHHHHHH---------HHHHcCcEEEEEccccccccCCCCCcChhcccCccCc
Confidence 467899999999999999998755555544 34459999999999985 32223332 2368
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
|+++.|+||++| ++| +|++++++++++.+.+... ....+.+.....++.++++
T Consensus 228 ~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~l~ 282 (386)
T 1u08_A 228 AVAVSSFGKTYH-MTGWKVGYCVAPAPISAEIRKVHQ------------------------YLTFSVNTPAQLALADMLR 282 (386)
T ss_dssp EEEEEEHHHHTT-CGGGCCEEEECCHHHHHHHHHHHH------------------------HHTSSCCHHHHHHHHHHHH
T ss_pred EEEEecchhhcC-CcccceEEEEcCHHHHHHHHHHHH------------------------hhccCCChHHHHHHHHHHh
Confidence 999999999998 668 8999999888776654311 0122344555566666666
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHH-hh
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLA-SL 423 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L-~~ 423 (508)
.. +.+++++++++.++++++.+.|+++ +++++.+.. +.++++++++... .+..++.+.| ++
T Consensus 283 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~--~~~~~~~~~l~~~ 344 (386)
T 1u08_A 283 AE-PEHYLALPDFYRQKRDILVNALNES-------RLEILPCEG--------TYFLLVDYSAVST--LDDVEFCQWLTQE 344 (386)
T ss_dssp HC-THHHHTHHHHHHHHHHHHHHHTTSS-------SCEECCCCB--------SSEEEEECTTTCC--SCHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCc--------eEEEEEecCCCCC--CCHHHHHHHHHHh
Confidence 43 3346788899999999999999886 577765432 6788988865310 2334576655 57
Q ss_pred CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 424 SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 424 ~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+||.+++|..|.... ..++++|+|++ ++.++++++++.|+++
T Consensus 345 ~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~--~~~~~i~~~~~~l~~~ 386 (386)
T 1u08_A 345 HGVAAIPLSVFCADP-------------------------------FPHKLIRLCFA--KKESTLLAAAERLRQL 386 (386)
T ss_dssp SCEECEEGGGGCSSC-------------------------------CCSCEEEEECC--SCHHHHHHHHHHHTTC
T ss_pred CCEEEeCchHhCCCC-------------------------------CCCCEEEEEEc--CCHHHHHHHHHHHhhC
Confidence 899999876442210 12578999998 4899999999998753
No 69
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.96 E-value=9.8e-28 Score=244.78 Aligned_cols=319 Identities=15% Similarity=0.117 Sum_probs=234.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhcc---ccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTN---VYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~ 114 (508)
+++++|+.+.... +++.+++++.+.+... ...++.. ...++++++++++|++++ +|++|+|+|+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~----------~~~~lr~~la~~~g~~~~--~i~~t~g~~~ 93 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA----------SSQKLREVAGELYGFDPS--WIIMANGSDE 93 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS----------SCHHHHHHHHHHHTCCGG--GEEEESSHHH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC----------chHHHHHHHHHHhCcCcc--eEEEcCCHHH
Confidence 5689999876554 4666777765543221 2222211 135789999999999888 8999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
|+++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+.+..+ ++++ ++
T Consensus 94 al~~~~~~l-~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~-----------------~~l~--~~--- 147 (360)
T 3hdo_A 94 VLNNLIRAF-AAEGEEIGYVHPSYSYYGT---LAEVQGARVRTFGLTGDFRI-----------------AGFP--ER--- 147 (360)
T ss_dssp HHHHHHHHH-CCTTCEEEEESSSCTHHHH---HHHHHTCEEEEECBCTTSSB-----------------TTCC--SS---
T ss_pred HHHHHHHHH-hCCCCEEEEcCCChHHHHH---HHHHCCCEEEEeeCCCCCCH-----------------HHHH--hh---
Confidence 999999998 6889999999877776554 44456999999998654332 2223 11
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC--CCCCCCC-CCCCCcEEEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--VTQPPDL-SKYPVDFVVM 271 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--g~~~~d~-~~~~~D~~~~ 271 (508)
.+++++++++++||||.++|++++.++|++ +|+++|+|++|+. +....++ ...+.++++.
T Consensus 148 -----~~~~~v~i~~p~nptG~~~~~~~l~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 148 -----YEGKVFFLTTPNAPLGPSFPLEYIDELARR------------CAGMLVLDETYAEFAESNALELVRRHENVVVTR 210 (360)
T ss_dssp -----BCSSEEEEESSCTTTCCCCCHHHHHHHHHH------------BSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEE
T ss_pred -----cCCCEEEEeCCCCCCCCCcCHHHHHHHHHH------------CCCEEEEECChHhhCCcchhHHhccCCCEEEEe
Confidence 135699999999999999999999999997 8999999999984 2222221 1235568899
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|+||++| ++| +|++++++++++.+.... ...+.+....+++.++++.. .
T Consensus 211 s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~--~ 261 (360)
T 3hdo_A 211 TLSKSYS-LAGMRIGLAIARPEVIAALDKIR--------------------------DHYNLDRLAQAACVAALRDQ--A 261 (360)
T ss_dssp ESTTTTS-CTTSCCEEEECCHHHHHHHHHHS--------------------------CSCCSCHHHHHHHHHHHHCH--H
T ss_pred cchHhhc-CCccceeeEeeCHHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCH--H
Confidence 9999998 445 799999888876665431 11345666677777777642 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.++++.+++.++++++.+.|+++ ++++..+. ++++++.+++. +..++.+.|.++||.++
T Consensus 262 ~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~ 320 (360)
T 3hdo_A 262 YLSECCRRIRETREWFTTELRSI-------GYDVIPSQ---------GNYLFATPPDR-----DGKRVYDGLYARKVLVR 320 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-------TCEECCCS---------SSEEEEECTTC-----CHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CCEEcCCC---------ccEEEEECCCC-----CHHHHHHHHHHCCEEEE
Confidence 36888999999999999999886 46665332 67888877643 34568889999999998
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++.. +. .++++|+|++ |.+|+++++++|+++.+
T Consensus 321 ~~~~---~~--------------------------------~~~~iRis~~---~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 321 HFSD---PL--------------------------------LAHGMRISIG---TREEMEQTLAALKEIGE 353 (360)
T ss_dssp CCCS---TT--------------------------------TTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred ECCC---CC--------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence 8643 10 1578999998 99999999999998764
No 70
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=6.1e-28 Score=246.44 Aligned_cols=287 Identities=15% Similarity=0.095 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
..++|+.+|++++++++ +|++|+|+++++++++.++ .++| ++|+++...|+++... ++..|.+++.+|.+.+.
T Consensus 60 ~~~lr~~la~~~~~~~~--~v~~~~G~~~ai~~~~~~~-~~~g~d~Vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE--QVLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVS---AETIGVECRTVPTLDNW 133 (356)
T ss_dssp CHHHHHHHHHHHTSCGG--GEEEESHHHHHHHHHHHHH-CCTTTCEEEECSSSCTHHHHH---HHHHTCEEEECCCCTTS
T ss_pred HHHHHHHHHHHhCCChH--HEEEcCCHHHHHHHHHHHH-hCCCCCEEEEeCCChHHHHHH---HHHcCCEEEEeeCCCCC
Confidence 46789999999999887 8999999999999999998 5778 9999988777766544 44469999999987543
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+ |+++++ +++ + ++++|++++++||||.++|.+++.++++ +|+ +|+
T Consensus 134 ~~---------------d~~~l~--~~i------~-~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~-~~~ 179 (356)
T 1fg7_A 134 QL---------------DLQGIS--DKL------D-GVKVVYVCSPNNPTGQLINPQDFRTLLE---------LTR-GKA 179 (356)
T ss_dssp CC---------------CHHHHH--TSC------T-TEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHT-TTC
T ss_pred CC---------------CHHHHH--HHh------c-CCCEEEEeCCCCCCCCCCCHHHHHHHHH---------hCC-CCC
Confidence 44 688888 554 3 6899999999999999999999999998 567 899
Q ss_pred EEEEeccccCCCCC---CCC-CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhh
Q 010538 245 MVLIDAAKGCVTQP---PDL-SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 245 ~vivD~a~~~g~~~---~d~-~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
++|+|++|+..... .++ ...+.++++.|+||+|| ++| +|++++++++++.+.+...
T Consensus 180 ~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~----------------- 241 (356)
T 1fg7_A 180 IVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFA-LAGLRCGFTLANEEVINLLMKVIA----------------- 241 (356)
T ss_dssp EEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTC-CGGGCCEEEEECHHHHHHHHHHSC-----------------
T ss_pred EEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhc-CchhhhEEEEeCHHHHHHHHHhcC-----------------
Confidence 99999999853311 222 33467899999999998 667 7999999888776654310
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
..+.|.....+..++++......+++..++++++++++.+.|++++ ++..+.+.. ++
T Consensus 242 ---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~--------~~ 298 (356)
T 1fg7_A 242 ---------PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIP------CVEQVFDSE--------TN 298 (356)
T ss_dssp ---------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST------TEEEECCCS--------SS
T ss_pred ---------CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCC------CceEECCCC--------Ce
Confidence 1134555555555555432111167888899999999999998872 443333432 78
Q ss_pred eEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 399 MVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 399 ~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
+++++++ + ..++.+.|.++||.+++ |..|.. ++++||
T Consensus 299 ~~~~~~~--~-----~~~l~~~L~~~gI~v~~~g~~~~~-----------------------------------~~~iRi 336 (356)
T 1fg7_A 299 YILARFK--A-----SSAVFKSLWDQGIILRDQNKQPSL-----------------------------------SGCLRI 336 (356)
T ss_dssp EEEEEET--T-----HHHHHHHHHHTTEECEECTTSTTC-----------------------------------TTEEEE
T ss_pred EEEEECC--C-----HHHHHHHHHHCCEEEEECCCCCCC-----------------------------------CCeEEE
Confidence 8888885 1 23578888999999998 765421 468999
Q ss_pred ecCCCCCHHHHHHHHHhhhhh
Q 010538 478 SFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~ 498 (508)
|++ +.+|+++++++|+++
T Consensus 337 s~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 337 TVG---TREESQRVIDALRAE 354 (356)
T ss_dssp ECC---CHHHHHHHHHHHHTC
T ss_pred EeC---CHHHHHHHHHHHHhh
Confidence 998 799999999998764
No 71
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.96 E-value=3.9e-28 Score=247.16 Aligned_cols=323 Identities=12% Similarity=0.054 Sum_probs=236.8
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
+++|.|+.+... ++++.+.+++.+.+ .....+|.. ...+++++++++++++++ +|++|+|+|+|++
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~----------~~~~l~~~la~~~~~~~~--~i~~~~g~t~al~ 92 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGI-KNLGVYPDV----------NYRRLNKSIENYLKLKDI--GIVLGNGASEIIE 92 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHH-HGGGSCCCT----------TCHHHHHHHHHHHTCCSC--EEEEESSHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHH-HHhcCCCCc----------cHHHHHHHHHHHhCCCcc--eEEEcCCHHHHHH
Confidence 568888877443 35777777765543 332222221 146789999999999988 9999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
+++.++ ++|+++...|+++. ..++..|.+++.+|.+.++.+ ++++++ +++
T Consensus 93 ~~~~~~-----d~vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~---------------~~~~l~--~~l----- 142 (361)
T 3ftb_A 93 LSISLF-----EKILIIVPSYAEYE---INAKKHGVSVVFSYLDENMCI---------------DYEDII--SKI----- 142 (361)
T ss_dssp HHHTTC-----SEEEEEESCCTHHH---HHHHHTTCEEEEEECCTTSCC---------------CHHHHH--HHT-----
T ss_pred HHHHHc-----CcEEEecCChHHHH---HHHHHcCCeEEEeecCcccCC---------------CHHHHH--Hhc-----
Confidence 999987 78888876666554 445567999999998866555 467777 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCC----CCCCCcEEEE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDL----SKYPVDFVVM 271 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~----~~~~~D~~~~ 271 (508)
.+ +++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+..... ... ...+.++++.
T Consensus 143 -~~-~~~v~i~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (361)
T 3ftb_A 143 -DD-VDSVIIGNPNNPNGGLINKEKFIHVLK---------LAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIR 211 (361)
T ss_dssp -TT-CSEEEEETTBTTTTBCCCHHHHHHHHH---------HHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEE
T ss_pred -cC-CCEEEEeCCCCCCCCCCCHHHHHHHHH---------HhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEe
Confidence 34 799999999999999999887777766 455599999999998754331 111 1224458889
Q ss_pred eccccccCCCc--ceEEE-EechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 272 SFYKIFGYPTG--LGALI-MRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
|+||.+| ++| +|+++ .++++.+.+.... ...+++....+++.++++. .
T Consensus 212 s~sK~~~-~~G~r~g~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~--~ 262 (361)
T 3ftb_A 212 AMTKFFA-MPGIRFGYGITNNKEIAAKIKAKQ--------------------------NPWNINCFAEMAAINCLKD--T 262 (361)
T ss_dssp ESSSTTS-CGGGCCEEEEESCHHHHHHHHTTS--------------------------CTTCSCHHHHHHHHHTSSC--H
T ss_pred eChhhcC-CCCcceeEEEeCCHHHHHHHHhhC--------------------------CCCCCCHHHHHHHHHHhcC--H
Confidence 9999998 546 79988 6777766555431 1235666777777777663 2
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
..++.+++++.++++++.+.|+++ ++++ +..+. ++++++.+++. +..++.+.|.++||.
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~l~~~gi~ 322 (361)
T 3ftb_A 263 NYIEESLLWIKKERKRFIEELNKI------GFIKRVFSPH---------ANFVLCRLENI-----SGEKLYDSLLKEDIV 322 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS------SSEEEEECCS---------SSEEEEEESSS-----CHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCCceecCCC---------CeEEEEEcCCC-----CHHHHHHHHHHCCeE
Confidence 346888999999999999999987 4687 65442 67888888752 345688889888999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+++|..|... .++++|+|++ +.+|++++++.++++.+
T Consensus 323 v~~g~~~~~~---------------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 323 IRRCCNFIGL---------------------------------DDSFVRFAIK---DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp CEECTTSTTC---------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred EeeCccCCCC---------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence 9998766431 2689999998 99999999999988765
No 72
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.96 E-value=1.5e-27 Score=243.87 Aligned_cols=338 Identities=12% Similarity=0.016 Sum_probs=235.0
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD 103 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~ 103 (508)
.+..+.. .|..-.+++++|+.+... .+++.+.+++.+.+ ......+. ....++++.++++++++++
T Consensus 11 ~~~~~~~-~~~~~~~~~idl~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~----------~~~~~l~~~la~~~~~~~~- 77 (364)
T 1lc5_A 11 NIREPAT-VLGISPDQLLDFSANINPLGMPVSVKRALIDNL-DCIERYPD----------ADYFHLHQALARHHQVPAS- 77 (364)
T ss_dssp CCHHHHH-HHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTG-GGGGSCCC----------TTCHHHHHHHHHHHTSCGG-
T ss_pred cHHHHHH-hcCCCccceEEeccccCCCCCCHHHHHHHHHHH-HHhhcCCC----------CCHHHHHHHHHHHHCcCHH-
Confidence 4445554 554322457888877543 25677777765533 22111111 1246789999999999887
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccch
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++++.+++.++ +|++|++....|+++. ..++..|.+++.+|.+....++ + +
T Consensus 78 -~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~-------------~-l 136 (364)
T 1lc5_A 78 -WILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYG---RALAQSGCEIRRWSLREADGWQ-------------L-T 136 (364)
T ss_dssp -GEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTTC-------------C-C
T ss_pred -HEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHHHH---HHHHHcCCeEEEEeCCcccccc-------------h-h
Confidence 8999999999999999998 4588998876666554 4455679999999987522221 0 1
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---
Q 010538 184 IQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ--- 257 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~--- 257 (508)
+++. +. .++++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+..
T Consensus 137 ~~~~--~~------~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~ 196 (364)
T 1lc5_A 137 DAIL--EA------LTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKS------------LNINLILDEAFIDFIPHET 196 (364)
T ss_dssp TTHH--HH------CCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTGGGSTTCC
T ss_pred HHHH--Hh------ccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh------------cCcEEEEECcChhhccCcc
Confidence 2233 11 2356799999999999999999 5666666665 9999999999985432
Q ss_pred -CCCC-CCCCCcEEEEeccccccCCCc--ceEEE-EechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCC
Q 010538 258 -PPDL-SKYPVDFVVMSFYKIFGYPTG--LGALI-MRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTAS 332 (508)
Q Consensus 258 -~~d~-~~~~~D~~~~S~~K~~g~P~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 332 (508)
.+++ ...+.++++.|+||++| ++| +|+++ .++++++.+.+.. ...+.+
T Consensus 197 ~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~--------------------------~~~~~~ 249 (364)
T 1lc5_A 197 GFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQ--------------------------MPWSVN 249 (364)
T ss_dssp CSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHS--------------------------CTTCSC
T ss_pred chhhHhccCCCEEEEEECchhhc-CCccceEEEEECCHHHHHHHHHhC--------------------------CCCCCC
Confidence 2332 33567899999999998 556 79999 8888876665431 112455
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc
Q 010538 333 FLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF 412 (508)
Q Consensus 333 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 412 (508)
....+++.++++.. ..++++++++.++++++.+.|+++ ++++++.+ . ++++++.+++. ...
T Consensus 250 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~-~--------g~~~~~~~~~~-~~~- 310 (364)
T 1lc5_A 250 ALAALAGEVALQDS--AWQQATWHWLREEGARFYQALCQL------PLLTVYPG-R--------ANYLLLRCERE-DID- 310 (364)
T ss_dssp HHHHHHHHHGGGCH--HHHHHHHHHHHHHHHHHHHHHHTS------TTEEECCC-S--------SSEEEEEESCT-TCC-
T ss_pred HHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHhcC------CCCEECCC-C--------CeEEEEECCCc-HHH-
Confidence 56566666565541 246788889999999999999887 36877532 2 67888888642 223
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
+.+.|.++||.+++|..|... .++++|||++ +.+|+++++
T Consensus 311 ----l~~~l~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~---~~~~~~~l~ 350 (364)
T 1lc5_A 311 ----LQRRLLTQRILIRSCANYPGL---------------------------------DSRYYRVAIR---SAAQNERLL 350 (364)
T ss_dssp ----HHHHHHTTTEECEECTTSTTC---------------------------------CTTEEEEECC---CHHHHHHHH
T ss_pred ----HHHHHHHCCcEEeeCcccCCC---------------------------------CCCEEEEEeC---CHHHHHHHH
Confidence 778888899999998765321 2578999986 799999999
Q ss_pred Hhhhhhhhhh
Q 010538 493 CSSFDFVNFS 502 (508)
Q Consensus 493 ~~~~~~~~~~ 502 (508)
+.++++++-+
T Consensus 351 ~~l~~~~~~~ 360 (364)
T 1lc5_A 351 AALRNVLTGI 360 (364)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhhcc
Confidence 9998876543
No 73
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=1.1e-27 Score=247.16 Aligned_cols=340 Identities=11% Similarity=0.065 Sum_probs=231.2
Q ss_pred CCCeeeeCCCCCCC-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGATLY-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
+++|+|+.+....+ ++.+.+++.+.+ .. ....|... ....++|+.+++++ | ++++ +|++|+|
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~--~v~~t~g 99 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSL-ET----DALGYTVA----LGLPALRQRIARLYGEWYGVDLDPG--RVVITPG 99 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHH-C------------------CCHHHHHHHHHHHHHHHCCCCCGG--GEEEESS
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH-hc----CCCCCCCC----CChHHHHHHHHHHHHHHhCCCCCHH--HEEEecC
Confidence 67899998876554 566777665533 21 11111111 11344555555555 4 5666 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+|+++++.++ .++|++|++....|+++. ..++..|++++.+|.+.++.. ..|+++++ +
T Consensus 100 ~~~al~~~~~~l-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~--~- 159 (391)
T 3h14_A 100 SSGGFLLAFTAL-FDSGDRVGIGAPGYPSYR---QILRALGLVPVDLPTAPENRL-------------QPVPADFA--G- 159 (391)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECCGGGTT-------------SCCHHHHT--T-
T ss_pred hHHHHHHHHHHh-cCCCCEEEEcCCCCccHH---HHHHHcCCEEEEeecCcccCC-------------CCCHHHHH--h-
Confidence 999999999998 678899998876666554 445567999999998754422 11678888 2
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCCC-CCc
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSKY-PVD 267 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~~-~~D 267 (508)
. ++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+... .+.+.... +.+
T Consensus 160 -----~---~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 222 (391)
T 3h14_A 160 -----L---DLAGLMVASPANPTGTMLDHAAMGALIE---------AAQAQGASFISDEIYHGIEYEAKAVTALELTDEC 222 (391)
T ss_dssp -----S---CCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSS
T ss_pred -----c---CCeEEEECCCCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEECcchhcccCCCCcChhhcCCCE
Confidence 2 6799999999999999999555544444 3344999999999998422 23333322 466
Q ss_pred EEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL 345 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~ 345 (508)
+++.|++|++| ++| +|++++++++++.+.... ....++++....+++.++++
T Consensus 223 i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~- 276 (391)
T 3h14_A 223 YVINSFSKYFS-MTGWRVGWMVVPEDQVRVVERIA------------------------QNMFICAPHASQVAALAALD- 276 (391)
T ss_dssp EEEEESSSTTC-CTTSCCEEEECCGGGHHHHHHHH------------------------HHTTCCCCHHHHHHHHHHTT-
T ss_pred EEEEechhccC-CccceeEEEEeCHHHHHHHHHHH------------------------hhhccCCCHHHHHHHHHHhC-
Confidence 89999999998 556 799999988876654331 11234556666666666666
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-C
Q 010538 346 INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-S 424 (508)
Q Consensus 346 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~ 424 (508)
....++.+++++.++++++.+.|+++ ++....++. .+.++++.++... .+..++.+.|.+ +
T Consensus 277 -~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 338 (391)
T 3h14_A 277 -CDAELQANLDVYKANRKLMLERLPKA-------GFTRIAPPD-------GAFYVYADVSDLT---DDSRAFAAEILEKA 338 (391)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCBCCCC-------BTTEEEEECTTTC---SCHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHc-------CCCcccCCC-------eeEEEEEecCccC---CCHHHHHHHHHHHC
Confidence 23347888999999999999999886 232222222 1567777776421 234457766554 5
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~~ 504 (508)
||.+++|..|..+. .++++|+|++. +.++++.+++.|+++++-...
T Consensus 339 gi~v~~g~~~~~~~--------------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~~~ 384 (391)
T 3h14_A 339 GVAVTPGLDFDPER--------------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQARGE 384 (391)
T ss_dssp CEECEEGGGTCTTT--------------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEcCchhhCCCC--------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHHhcc
Confidence 99999998775521 26899999997 889999999999998865443
No 74
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.96 E-value=2.4e-28 Score=253.96 Aligned_cols=352 Identities=12% Similarity=0.013 Sum_probs=236.4
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~a 115 (508)
.+.++|+.+... .+++.+.+++.+.+ .. +...|.......++.+++.+.+.+.+|.+ ++ .+|++|+|+++|
T Consensus 25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~t~g~~~a 98 (411)
T 2o0r_A 25 IGAVNLGQGFPDEDGPPKMLQAAQDAI-AG----GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPE-TEVLVTVGATEA 98 (411)
T ss_dssp TTCEESSCSSCSSCCCHHHHHHHHHHH-HT----TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEEEHHHHH
T ss_pred CCeeeccCcCCCCCCCHHHHHHHHHHH-hc----CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCC-ceEEEeCCHHHH
Confidence 578999988765 35677777765544 22 11122211112334444444444445753 32 159999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc---cCccccccccccccccccchhhhhcCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA---VDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~---~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
+.+++.++ .++|++|+++...|+++... ++..|.+++.+|.+.+ ..+ |+++++ +++
T Consensus 99 l~~~~~~~-~~~gd~Vl~~~~~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~~---------------d~~~l~--~~l 157 (411)
T 2o0r_A 99 IAAAVLGL-VEPGSEVLLIEPFYDSYSPV---VAMAGAHRVTVPLVPDGRGFAL---------------DADALR--RAV 157 (411)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECEEETTEEEC---------------CHHHHH--HHC
T ss_pred HHHHHHHh-cCCCCEEEEeCCCcHhHHHH---HHHcCCEEEEeeccccccCCCC---------------CHHHHH--Hhh
Confidence 99999998 67889999999888887654 4456999999998643 223 688888 555
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCH---HHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCC--
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNL---DLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK-- 263 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i---~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~-- 263 (508)
.+++++|++++++||||.++|. ++|.++|++ +|+++|+|++|+.+. .+.++..
T Consensus 158 ------~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~g~~~~~~~~~~ 219 (411)
T 2o0r_A 158 ------TPRTRALIINSPHNPTGAVLSATELAAIAEIAVA------------ANLVVITDEVYEHLVFDHARHLPLAGFD 219 (411)
T ss_dssp ------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------TTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred ------ccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHH------------cCCEEEEEccccccccCCCCCcChhhcc
Confidence 3578999999999999999997 455555554 999999999998643 2233322
Q ss_pred --CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 264 --YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 264 --~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
.+.|+++.|+||++| ++| +|++++++++++.+.+... ....+.+....+++
T Consensus 220 ~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~ 274 (411)
T 2o0r_A 220 GMAERTITISSAAKMFN-CTGWKIGWACGPAELIAGVRAAKQ------------------------YLSYVGGAPFQPAV 274 (411)
T ss_dssp TTGGGEEEEEEHHHHTT-CTTTCEEEEECCHHHHHHHHHHHH------------------------HHTSCCCTTHHHHH
T ss_pred CCCCCEEEEeechhhcC-CccceEEEEeeCHHHHHHHHHHHh------------------------hccCCCChHHHHHH
Confidence 467999999999998 668 8999999888766554311 11123344455666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.. +..++++++++.++++++.+.|++. ++++..+.. +.++++.+++... .+..++.+
T Consensus 275 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~--~~~~~~~~ 336 (411)
T 2o0r_A 275 ALALDTE-DAWVAALRNSLRARRDRLAAGLTEI-------GFAVHDSYG--------TYFLCADPRPLGY--DDSTEFCA 336 (411)
T ss_dssp HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH-------TCEECCCCB--------SSEEEEECGGGTC--CCHHHHHH
T ss_pred HHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-------CCEecCCCe--------eEEEEEecCCCCC--CCHHHHHH
Confidence 6676643 2346788999999999999999886 577765432 5688899875211 23345666
Q ss_pred HH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.| +++||.+++|..|..... ++++.+.. ...+++|||++ ++.+|++++++.|+++
T Consensus 337 ~l~~~~gi~v~~g~~f~~~~~------~~~~~~~~----------------~~~~~iRis~~--~~~e~i~~~~~~l~~~ 392 (411)
T 2o0r_A 337 ALPEKVGVAAIPMSAFCDPAA------GQASQQAD----------------VWNHLVRFTFC--KRDDTLDEAIRRLSVL 392 (411)
T ss_dssp HHHHHHSEECEEGGGGSCCC--------------C----------------CGGGCEEEECC--SCHHHHHHHHHHHGGG
T ss_pred HHHHhCCEEEcChhhhCCCcc------cccccccc----------------CCCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 65 578999999876532110 01111110 02578999997 4899999999999987
Q ss_pred hhhh
Q 010538 499 VNFS 502 (508)
Q Consensus 499 ~~~~ 502 (508)
++..
T Consensus 393 ~~~~ 396 (411)
T 2o0r_A 393 AERP 396 (411)
T ss_dssp GC--
T ss_pred Hhcc
Confidence 6544
No 75
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.96 E-value=3.8e-28 Score=260.07 Aligned_cols=369 Identities=12% Similarity=0.039 Sum_probs=252.7
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--CCCceEEEcCChHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--MKDYKCIFTSGATAAL 116 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~~~~~i~~t~g~t~al 116 (508)
...-||++..++..++..+.+++..... .....|..+.....+.+++.+++++++|.+ ++ .++||+|+|+|+
T Consensus 94 ~~p~f~~~~~~~~~~~~~~~e~l~~~~~----~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~--~~~~t~ggt~a~ 167 (511)
T 3vp6_A 94 GHPRFFNQLSTGLDIIGLAGEWLTSTAN----TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG--DGIFSPGGAISN 167 (511)
T ss_dssp TSTTEESSSSCCCCHHHHHHHHHHHHHC----CCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC--EEEEESSHHHHH
T ss_pred CCCCceEeecCCCcHHHHHHHHHHHHhc----cCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCC--ceEECCchHHHH
Confidence 3455888887776666665554443322 112234445566778888999999999998 45 899999999999
Q ss_pred HHHHhhcCCC-------------CCCeEEEecccccchHHHHHHHHhcCC---eEEEEccCCccCccccccccccccccc
Q 010538 117 KLVGEAFPWS-------------HQSSYMYTMENHNSVLGIREYALSQGA---AAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 117 ~~~~~~l~~~-------------~g~~vl~~~~~h~s~~~~~~~~~~~G~---~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
..++.++... ++++|+++...|+++....+.+ |. +++.||.+.++.+
T Consensus 168 ~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~---g~g~~~~~~v~~d~~~~~-------------- 230 (511)
T 3vp6_A 168 MYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL---GFGTDNVILIKCNERGKI-------------- 230 (511)
T ss_dssp HHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCB--------------
T ss_pred HHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc---CCCCCcEEEeecCCCCcc--------------
Confidence 8877665321 4678999999999987666544 66 8999999877766
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD 260 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d 260 (508)
|+++++ ++|.+....+..+++|++++++|++|.+.|+++|.++|++ +|+++++|++++.+....+
T Consensus 231 -d~~~Le--~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~------------~~~~lhvD~a~~~~~~~~~ 295 (511)
T 3vp6_A 231 -IPADFE--AKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK------------YNLWLHVDAAWGGGLLMSR 295 (511)
T ss_dssp -CHHHHH--HHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHH------------HTCEEEEEETTGGGGGGCT
T ss_pred -CHHHHH--HHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHH------------cCCEEEEEccchhhHhhCh
Confidence 688888 6663221122348999999999999999999999999998 9999999999998776332
Q ss_pred -----CC-CCCCcEEEEeccccccCCCcceEEEEechh-Hhhhc---cccccCceEEecccchhhhhhccCccccccCCC
Q 010538 261 -----LS-KYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLK---NTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 261 -----~~-~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+. ..++|++++++|||+++|.|+|+++++++. +.... +.+...... .....+. ........+.
T Consensus 296 ~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~---~~~~~~~----~~~~~~~~~r 368 (511)
T 3vp6_A 296 KHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDK---HYDVSYD----TGDKAIQCGR 368 (511)
T ss_dssp TTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSC---SSCGGGC----CGGGSSCSSC
T ss_pred hhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccc---ccccccC----ccCCCCCCCC
Confidence 22 125799999999998889999999998763 33321 111111000 0000000 0011122222
Q ss_pred CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC--
Q 010538 331 ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD-- 408 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 408 (508)
+ ...++++.+++.+...|++++.+++.++++++.+.|++. ++++++.+..+ ..++++|++....
T Consensus 369 ~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~------pg~~l~~~~~p------~~~~v~f~~~p~~~~ 434 (511)
T 3vp6_A 369 H--VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR------EEFEMVFNGEP------EHTNVCFWYIPQSLR 434 (511)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTEEESSSSCC------SSSCEEEEECCGGGS
T ss_pred c--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEecCCC------CeEEEEEEEeCcccc
Confidence 2 245677778887777789999999999999999999987 47999874211 1677888764211
Q ss_pred C---Cc-----c--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 409 G---SW-----F--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 409 ~---~~-----~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
+ .. + ....+.+.|.++|+.+.... +. ....+.+|++
T Consensus 435 ~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~----~~------------------------------~~~~~~lRi~ 480 (511)
T 3vp6_A 435 GVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQ----PQ------------------------------GDKANFFRMV 480 (511)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE----EE------------------------------TTEEEEEEEC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE----Ee------------------------------CCceEEEEEE
Confidence 0 00 0 01247788888887644310 00 0013579999
Q ss_pred c-CCCCCHHHHHHHHHhhhhhhh
Q 010538 479 F-GYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 479 ~-~~~~t~eev~~l~~~~~~~~~ 500 (508)
+ +.++|.+||++++++|+++-+
T Consensus 481 ~~~~~~t~~di~~ll~~i~~~~~ 503 (511)
T 3vp6_A 481 ISNPAATQSDIDFLIEEIERLGQ 503 (511)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Confidence 9 799999999999999887654
No 76
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=8.7e-28 Score=243.73 Aligned_cols=336 Identities=12% Similarity=0.039 Sum_probs=234.0
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+||+++..+.+++.+++++.+.. .. +. ..+......+++++++++++| ++. +|++|+|+|+|+.+
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~-~~-----~~---~~~~~~~~~~~l~~~la~~~g-~~~--~v~~~~~gt~a~~~ 74 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHS-SG-----QA---GPYGTDELTAQVKRKFCEIFE-RDV--EVFLVPTGTAANAL 74 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTT-SS-----CC---CSTTCSHHHHHHHHHHHHHHT-SCC--EEEEESCHHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhc-cC-----cc---cccccchHHHHHHHHHHHHhC-CCC--cEEEeCCccHHHHH
Confidence 57899999888888999988876543 11 11 111124567889999999999 444 69999999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhc--CCeEEEEccCCccCccccccccccccccccchhhhhcCC-CCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQ--GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA-SFPER 195 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~--G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~-~l~~~ 195 (508)
++.++ .++|++|+++...|+++.... .+... |.+++.+|.+ +..+ |+++++ + ++.+.
T Consensus 75 al~~~-~~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~-~~~~---------------d~~~l~--~~~i~~~ 134 (356)
T 1v72_A 75 CLSAM-TPPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGP-AAKL---------------DIVRLR--ERTREKV 134 (356)
T ss_dssp HHHTS-CCTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCG-GGCC---------------CHHHHH--HHTTSST
T ss_pred HHHHh-cCCCCEEEEcCccchhhhhch-HHHHHhCCcEEEEecCC-CCeE---------------cHHHHH--HHhhhcc
Confidence 99998 578999999988777654330 13334 8899999875 2334 688888 7 66431
Q ss_pred -CCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC------CCCCCCCC-CCCCc
Q 010538 196 -DPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC------VTQPPDLS-KYPVD 267 (508)
Q Consensus 196 -~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~------g~~~~d~~-~~~~D 267 (508)
....+++++|++++++| ||.++|.+.+.++++ +|+++|+++|+|++++. +..+..+. ..++|
T Consensus 135 ~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~---------~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d 204 (356)
T 1v72_A 135 GDVHTTQPACVSITQATE-VGSIYTLDEIEAIGD---------VCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVD 204 (356)
T ss_dssp TCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHH---------HHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCC
T ss_pred hhhccCCceEEEEEcCCC-CCccCCHHHHHHHHH---------HHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCC
Confidence 01124789999999876 999777655554444 34449999999999863 22222221 13689
Q ss_pred EEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 268 FVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 268 ~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++.|+||+ |+|.|+|++++++++++.+..... ..|+.......++..+++.+.
T Consensus 205 ~~~~s~sK~-g~~~G~g~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~ 258 (356)
T 1v72_A 205 ALSFGATKN-GVLAAEAIVLFNTSLATEMSYRRK-------------------------RAGHLSSKMRFLSAQIDAYLT 258 (356)
T ss_dssp EEEECCGGG-TCSSCEEEEESSGGGHHHHHHHHH-------------------------HTTCCCSSTHHHHHHHHHHTS
T ss_pred EEEEecccC-CCcCccEEEEECHHHHhhHHHHhh-------------------------ccCchhhhHHHHHHHHHHHHH
Confidence 999999999 558888899998888765543210 011111112333334455554
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+..+..+.++..++++++.+.|+++ +++++..+.. ++++++.++. ++.+.|.++||.
T Consensus 259 ~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~--------~~~~~~~~~~---------~~~~~l~~~gi~ 315 (356)
T 1v72_A 259 DDLWLRNARKANAAAQRLAQGLEGL------GGVEVLGGTE--------ANILFCRLDS---------AMIDALLKAGFG 315 (356)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTC------TTEEEESCCC--------SSEEEEEECH---------HHHHHHHHTTCB
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhC------CCcEEccCCC--------ccEEEEEcCH---------HHHHHHHhcCeE
Confidence 4335567788899999999999886 3788876543 6888888742 378888889999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+++|. + .++++|+++++.+|.+|++++++.|+++++..
T Consensus 316 v~~g~-~------------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 316 FYHDR-W------------------------------------GPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp CBCSS-S------------------------------------STTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred Eeccc-c------------------------------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 98864 1 04689999999999999999999999876543
No 77
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=4.5e-28 Score=251.87 Aligned_cols=338 Identities=12% Similarity=0.016 Sum_probs=230.5
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~g 111 (508)
+++++|+.+..+ ++++.+.+++ +.+ ... ...|..... ..++++.+++++ | ++++ +|++|+|
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l-~~~----~~~y~~~~g----~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g 110 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YEN-KPE----VVYYSHSAG----IWELREAFASYYKRRQRVDVKPE--NVLVTNG 110 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHT-CCS----SCCCCCTTC----CHHHHHHHHHHHHHTSCCCCCGG--GEEEESH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHH-hcC----CCCCCCCCC----cHHHHHHHHHHHHHHhCCCCCHH--HEEEeCC
Confidence 568899988775 3466677776 544 221 111211111 234555555555 3 4556 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+|+.+++.++ .++|++|+++...|+++.... +..|.+++.+|.+....+ .. +++++ ++
T Consensus 111 ~t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~-------------~~-~~~l~--~~ 170 (409)
T 2gb3_A 111 GSEAILFSFAVI-ANPGDEILVLEPFYANYNAFA---KIAGVKLIPVTRRMEEGF-------------AI-PQNLE--SF 170 (409)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEESCCTHHHHHH---HHHTCEEEEEECCGGGTS-------------CC-CTTGG--GG
T ss_pred HHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHcCCEEEEeccCCCCCC-------------cc-HHHHH--Hh
Confidence 999999999998 678899999998888766544 445999999998742222 00 34556 44
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCC-CCC-CCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPD-LSK-YPV 266 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d-~~~-~~~ 266 (508)
+ .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+.+.. +.+ +.. .+.
T Consensus 171 l------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 235 (409)
T 2gb3_A 171 I------NERTKGIVLSNPCNPTGVVYGKDEMRYLVE---------IAERHGLFLIVDEVYSEIVFRGEFASALSIESDK 235 (409)
T ss_dssp C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTT
T ss_pred h------CcCCeEEEECCCCCCCCCCcCHHHHHHHHH---------HHHHcCCEEEEECcccccccCCCCCCccccCCCC
Confidence 4 357899999999999999998544444433 33349999999999986532 233 222 257
Q ss_pred cEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
|+++.|+||++| ++| +|++++++ ++++.+.+... .. . +++....+++.+++
T Consensus 236 ~i~~~s~sK~~g-~~G~r~G~~~~~~~~l~~~l~~~~~-----------------------~~-~-~~~~~~~~a~~~~l 289 (409)
T 2gb3_A 236 VVVIDSVSKKFS-ACGARVGCLITRNEELISHAMKLAQ-----------------------GR-L-APPLLEQIGSVGLL 289 (409)
T ss_dssp EEEEEESTTTTT-CGGGCCEEEECSCHHHHHHHHHHHH-----------------------HS-C-CCCHHHHHHHHHHH
T ss_pred EEEEecchhccC-CccceEEEEEECcHHHHHHHHHHHh-----------------------cc-C-CCCHHHHHHHHHHH
Confidence 999999999998 667 89999998 88766654311 11 1 44555555566566
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE-ecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI-YGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+.. ..+++.+.+++.++++++.+.|+++ ++++ ..+.. +.++++++++ .+..++.+.|.
T Consensus 290 ~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~--------~~~~~~~~~~-----~~~~~l~~~l~ 348 (409)
T 2gb3_A 290 NLD-DSFFDFVRETYRERVETVLKKLEEH-------GLKRFTKPSG--------AFYITAELPV-----EDAEEFARWML 348 (409)
T ss_dssp TCC-HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCBCCCSB--------SSEEEEECSS-----SCHHHHHHHHH
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHHHHHc-------CceeeeCCCe--------eEEEEEEeCC-----CCHHHHHHHHH
Confidence 431 2246788899999999999999886 4555 43332 5677777762 23455777887
Q ss_pred hC------CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 423 LS------GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 423 ~~------gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
++ ||.+++|..|.... ....+++|++++ +|.++++++++.|+
T Consensus 349 ~~~~~~~~gi~v~~g~~f~~~~------------------------------~~~~~~iRis~~--~~~e~i~~~~~~l~ 396 (409)
T 2gb3_A 349 TDFNMDGETTMVAPLRGFYLTP------------------------------GLGKKEIRIACV--LEKDLLSRAIDVLM 396 (409)
T ss_dssp HSCCBTTEEEECEEGGGGCSST------------------------------TTTSSEEEEECC--SCHHHHHHHHHHHH
T ss_pred hccccccCcEEEeCchHhCCCC------------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHH
Confidence 66 99999886543210 012578999999 89999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++.+
T Consensus 397 ~~l~~~ 402 (409)
T 2gb3_A 397 EGLKMF 402 (409)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887654
No 78
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.96 E-value=8.4e-29 Score=256.11 Aligned_cols=350 Identities=15% Similarity=0.048 Sum_probs=244.6
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccc-cCCCCCccchh-hhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNV-YGNPHSQSDIS-LATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
++++++.++.++.+++++.+.+...+ .+++.+.+..+ .....+.+.+|+++++++|++++ .+++++| |+|+.+++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~--~i~~~sG-t~a~~~a~ 102 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--NVQPHSG-AQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--EEEecCc-HHHHHHHH
Confidence 56667777789989888755432121 12333322222 23445555688999999999855 3444555 99999999
Q ss_pred hhcCCCCCCeEEEecccccchHH-HH--HHHHhcCCeEEEEccC-CccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLG-IR--EYALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~-~~--~~~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
.++ .++|++|+++...|+++.. +. .... .+.++..++++ ....+ |+++++ +++.+
T Consensus 103 ~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~~-- 161 (405)
T 2vi8_A 103 FTV-LEHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDPETHVI---------------DYDDVR--EKARL-- 161 (405)
T ss_dssp HHH-CCTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCTTTCSB---------------CHHHHH--HHHHH--
T ss_pred HHh-cCCCCEEEEecccccchhcccchhhhcc-ceeEEEecccccccCCc---------------CHHHHH--HHHHh--
Confidence 998 6889999999999988753 21 1211 13477777765 23333 577777 44421
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCC---CCcEEEEec
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKY---PVDFVVMSF 273 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~---~~D~~~~S~ 273 (508)
.++++|+++. ++ .|...|+++|.++|++ +|+++|+|++|+.|..+.+.... .+|++++|+
T Consensus 162 ---~~~~~v~~~~-~~-~~~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~ 224 (405)
T 2vi8_A 162 ---HRPKLIVAAA-AA-YPRIIDFAKFREIADE------------VGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTT 224 (405)
T ss_dssp ---HCCSEEEECC-SS-CCSCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEES
T ss_pred ---cCCeEEEEeC-CC-CCccCCHHHHHHHHHH------------cCCEEEEEccccccccccCcCCCccccCCEEEEec
Confidence 2568887743 33 4677899999999998 89999999999864332222212 589999999
Q ss_pred cccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 274 YKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
||++++|.| |++++++++.+.+.+... .+..++++..+++++.++++.+.+.++++
T Consensus 225 sK~~~g~~g-G~~~~~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~aa~~~al~~~~~~~~~~ 280 (405)
T 2vi8_A 225 HKTLRGPRG-GMILCQEQFAKQIDKAIF-----------------------PGIQGGPLMHVIAAKAVAFGEALQDDFKA 280 (405)
T ss_dssp SSTTCCCSC-EEEEECHHHHHHHHHHHT-----------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHH
T ss_pred cccCCCCCC-eEEEEcHHHHHHHHhhhc-----------------------ccccCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 999987888 999999888766654311 12246677888888888888876557899
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.+++.++++++.+.|+++ +++++.+... ++++++.++... .+...+.+.|.++||.+++|..
T Consensus 281 ~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~ 343 (405)
T 2vi8_A 281 YAKRVVDNAKRLASALQNE-------GFTLVSGGTD-------NHLLLVDLRPQQ---LTGKTAEKVLDEVGITVNKNTI 343 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHHTEECEEECC
T ss_pred HHHHHHHHHHHHHHHHHhC-------CCeEecCCCC-------ceEEEEEccCCC---CCHHHHHHHHHHcCceeccCcC
Confidence 9999999999999999886 5777765322 788889886421 2345688889999999998864
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~~~ 503 (508)
|.... +....+++|+|++.+ .|.+|+++++++|+++++.++
T Consensus 344 ~~~~~-----------------------------~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 344 PYDPE-----------------------------SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp TTCSS-----------------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred ccccC-----------------------------CCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 31100 001246799999974 679999999999998876543
No 79
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.96 E-value=1e-27 Score=247.84 Aligned_cols=359 Identities=10% Similarity=-0.003 Sum_probs=240.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASM 101 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~ 101 (508)
.|+...+ .|....+++++|+.+..+ ++++.+.+++.+.+ .. ....|..+ ..++.+++.+.+++.+| +++
T Consensus 18 ~~d~~g~-~~g~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~ 89 (399)
T 1c7n_A 18 KWDLMYS-QNPEVGNEVVPLSVADMEFKNPPELIEGLKKYL-DE----TVLGYTGP--TEEYKKTVKKWMKDRHQWDIQT 89 (399)
T ss_dssp HHHHHHH-HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHH-HH----CCCSSBCC--CHHHHHHHHHHHHHHHCCCCCG
T ss_pred ccccchh-hccccCCCceeeeecCCCCCCCHHHHHHHHHHH-hc----CCCCCCCC--cHHHHHHHHHHHHHHhCCCCCh
Confidence 4554443 453211468888887764 34677777765543 21 11122221 23333334444444457 566
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-CccCccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~ 180 (508)
+ +|++|+|+++|+.+++.++ .++|++|++....|+++. ..++..|.+++.+|.+ .++.. .
T Consensus 90 ~--~v~~t~g~~~a~~~~~~~l-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~-------------~ 150 (399)
T 1c7n_A 90 D--WIINTAGVVPAVFNAVREF-TKPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYY-------------T 150 (399)
T ss_dssp G--GEEEESSHHHHHHHHHHHH-CCTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEE-------------E
T ss_pred h--hEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCE-------------E
Confidence 6 8999999999999999998 578899998887666654 4445679999999885 22211 1
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC--- 254 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~--- 254 (508)
.|+++++ ++++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.
T Consensus 151 ~d~~~l~--~~l~-----~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~ 211 (399)
T 1c7n_A 151 IDFQKLE--KLSK-----DKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLK------------SDLMLWSDEIHFDLIM 211 (399)
T ss_dssp CCHHHHH--HHHT-----CTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHH------------SSCEEEEECTTTTCBC
T ss_pred EcHHHHH--HHhc-----cCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHH------------cCCEEEEEcccccccc
Confidence 1678888 5553 257899999999999999999 6666666665 9999999999986
Q ss_pred -CCCCCCCCCC-----CCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 255 -VTQPPDLSKY-----PVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 255 -g~~~~d~~~~-----~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|..+.++... +.++++.|+||++| ++| +|++++++ ++++.+.+... .
T Consensus 212 ~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~~-----------------------~ 267 (399)
T 1c7n_A 212 PGYEHTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIKNPDIRERFTKSRD-----------------------A 267 (399)
T ss_dssp TTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHHHHHHHHH-----------------------H
T ss_pred CCCCcccHHHcCccccCcEEEEEeChhhcc-ccchheEEEEECCHHHHHHHHHHHh-----------------------h
Confidence 3233444332 45689999999998 557 79999974 57666554311 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
+..++++....+++.++++.. ...++.+++++.++++++.+.|++ + ++++++.+.. +.++++.+
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~ 332 (399)
T 1c7n_A 268 TSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNH------PEIKAPLIEG--------TYLQWIDF 332 (399)
T ss_dssp TTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHC------TTSBCCCCSB--------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhC------CCCeEecCCc--------eEEEEEEc
Confidence 112355666666666676642 224678889999999999999987 6 3566554432 45667888
Q ss_pred eCCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 405 KRPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.. .+..++.+.|. ++||.+++|..|... ..+++|||++..
T Consensus 333 ~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~~~- 375 (399)
T 1c7n_A 333 RALK---MDHKAMEEFMIHKAQIFFDEGYIFGDG---------------------------------GIGFERINLAAP- 375 (399)
T ss_dssp GGGC---CCHHHHHHHHHHTTCCCCEEGGGGCGG---------------------------------GTTEEEEECCSC-
T ss_pred ccCC---CCHHHHHHHHHHhCCEEEeCccccCCC---------------------------------CCCeEEEEeccC-
Confidence 6420 23445778885 789999998765431 157899999964
Q ss_pred CHHHHHHHHHhhhhhhhhhhhcc
Q 010538 484 TFEDAKVNRCSSFDFVNFSQFLN 506 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~~~~~~ 506 (508)
.++++++++.++++++.+..-|
T Consensus 376 -~~~l~~~l~~l~~~l~~~~~~~ 397 (399)
T 1c7n_A 376 -SSVIQESLERLNKALKDLKNRH 397 (399)
T ss_dssp -HHHHHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999998877655433
No 80
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.96 E-value=1.5e-27 Score=247.98 Aligned_cols=345 Identities=11% Similarity=0.037 Sum_probs=233.6
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CC-CCceEEEcC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SM-KDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~-~~~~i~~t~ 110 (508)
+++++|+.+.... +++.+.+++.+ .+... ....|... ....++++.+++++ |. ++ + +|++|+
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~-~~~~~---~~~~y~~~----~g~~~l~~~ia~~~~~~~g~~~~~~~--~v~~t~ 106 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCT-VAQRE---DTHGYSTS----RGIPRLRRAISHWYRDRYDVQIDPES--EAIVTI 106 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHH-TC------------CT----TCCHHHHHHHHHHHHHHHCCCCCTTT--SEEEES
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHH-HHhCC---CCCCCCCC----CCcHHHHHHHHHHHHHHhCCCCCCCc--CEEEcC
Confidence 5678888776543 46667666544 32211 01112111 11345666777766 75 55 5 799999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++|+.+++.++ ..+|++|+++...|+++.... +..|.+++.+|.+.+..+ ..|+++++ +
T Consensus 107 g~~~a~~~~~~~~-~~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~-------------~~d~~~l~--~ 167 (412)
T 2x5d_A 107 GSKEGLAHLMLAT-LDHGDTILVPNPSYPIHIYGA---VIAGAQVRSVPLVPGIDF-------------FNELERAI--R 167 (412)
T ss_dssp CHHHHHHHHHHHH-CCTTCEEEEEESCCHHHHHHH---HHHTCEEEEEECSTTSCH-------------HHHHHHHH--H
T ss_pred ChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHcCCEEEEeecCCccCC-------------CCCHHHHH--H
Confidence 9999999999998 678899999988887665544 446999999998753121 11678888 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCC---
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK--- 263 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~--- 263 (508)
++ .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+.+. .+.++..
T Consensus 168 ~i------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~ 232 (412)
T 2x5d_A 168 ES------IPKPRMMILGFPSNPTAQCVELDFFERVVA---------LAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPG 232 (412)
T ss_dssp TE------ESCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred hc------ccCceEEEECCCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEeccccccccCCCCCCChhhccC
Confidence 54 357899999999999999999755544444 3334999999999998743 2334333
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+.|+++.|+||++| ++| +|++++++++++.+..... ...++.+....+++.
T Consensus 233 ~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~ 287 (412)
T 2x5d_A 233 AKDIAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIKS------------------------YHDYGTFTPLQVAAI 287 (412)
T ss_dssp GGGTEEEEEECC-CCS-CTTSCCEEEEECHHHHHHHHHHHH------------------------HHCCCCCHHHHHHHH
T ss_pred ccCcEEEEecCccccC-CcccceEEEEcCHHHHHHHHHHHh------------------------hhccCCCHHHHHHHH
Confidence 367899999999998 557 7999999888776654311 112345555566555
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKL 420 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 420 (508)
++++.. +..++.+++++.++++++.+.|+++ +++++.+.. +.++++.++..-+ ..+..++.+.
T Consensus 288 ~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~-~~~~~~~~~~ 350 (412)
T 2x5d_A 288 AALEGD-QQCVRDIARQYQQRRDVLVKGLREA-------GWMVENPKA--------SMYVWAKIPEPYA-HLGSLEFAKK 350 (412)
T ss_dssp HHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCCCCSB--------SSEEEEECCTTTG-GGCHHHHHHH
T ss_pred HHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCEecCCCe--------eeEEEEEcCCccC-CCCHHHHHHH
Confidence 566532 1236788899999999999999876 455554332 5678888853200 0033457777
Q ss_pred H-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 A-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
| +++||.+++|..|... ..+++|||++. +.++++.+++.+.+++
T Consensus 351 l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l 395 (412)
T 2x5d_A 351 LLQDAKVSVSPGIGFGDY---------------------------------GDDHVRFALIE--NRDRLRQAVRGIKAMF 395 (412)
T ss_dssp HHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEeCchhhCCC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 7 4579999998766332 15789999997 8999999999999887
Q ss_pred hhhhh
Q 010538 500 NFSQF 504 (508)
Q Consensus 500 ~~~~~ 504 (508)
+-+..
T Consensus 396 ~~~~~ 400 (412)
T 2x5d_A 396 RADGL 400 (412)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 65443
No 81
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.96 E-value=5.6e-28 Score=250.75 Aligned_cols=337 Identities=13% Similarity=0.026 Sum_probs=233.4
Q ss_pred CCCeeeeCCCC---C-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc------CCCCCCceEEE
Q 010538 39 NGTVYLDHAGA---T-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF------NASMKDYKCIF 108 (508)
Q Consensus 39 ~~~iyld~~~~---~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~~~i~~ 108 (508)
++.++|+.+.. . ++++.+.+++.+.+. ... ..|..... ..++++.+++++ +++++ +|++
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~-~~~----~~y~~~~g----~~~l~~~la~~l~~~~g~~~~~~--~v~~ 106 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK-EGH----NYYGDSEG----LPELRKAIVEREKRKNGVDITPD--DVRV 106 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHH-TTC----CSCCCTTC----CHHHHHHHHHHHHHHHCCCCCGG--GEEE
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHh-cCC----CCCCCCCC----cHHHHHHHHHHHHHhcCCCCCHH--HEEE
Confidence 57899998876 2 346777777655442 211 11211111 234555555555 45666 8999
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+|+|+.+++.++ .++|++|+++...|+++... ++..|++++.+|.+.+... ..|+++++
T Consensus 107 t~g~~~al~~~~~~l-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~-------------~~d~~~l~- 168 (406)
T 1xi9_A 107 TAAVTEALQLIFGAL-LDPGDEILVPGPSYPPYTGL---VKFYGGKPVEYRTIEEEDW-------------QPDIDDIR- 168 (406)
T ss_dssp ESHHHHHHHHHHHHH-CCTTCEEEEEESCCHHHHHH---HHHTTCEEEEEEEEGGGTS-------------EECHHHHH-
T ss_pred cCChHHHHHHHHHHh-CCCCCEEEEcCCCCccHHHH---HHHcCCEEEEeecCCCcCC-------------cCCHHHHH-
Confidence 999999999999998 67899999998888765544 4557999999998642111 11678888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLS 262 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~ 262 (508)
+++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+.. +.++.
T Consensus 169 -~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~------------~~~~li~De~~~~~~~~~~~~~~~ 229 (406)
T 1xi9_A 169 -KKI------TDRTKAIAVINPNNPTGALYDKKTLEEILNIAGE------------YEIPVISDEIYDLMTYEGEHISPG 229 (406)
T ss_dssp -HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCCEEEECTTTTCBSSSCCCCHH
T ss_pred -Hhh------CcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHH------------cCCEEEEEcCccccccCCCCCCHH
Confidence 555 346899999999999999998 5566666665 9999999999986432 22332
Q ss_pred C--CCC-cEEEEeccccccCCCc--ceEEE--Eec----hhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 263 K--YPV-DFVVMSFYKIFGYPTG--LGALI--MRN----DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 263 ~--~~~-D~~~~S~~K~~g~P~G--~G~l~--~~~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
. .+. |+++.|+||+++ ++| +|+++ .++ ++++.+.... . .. +++
T Consensus 230 ~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~l~~~l~~~~-----------------------~-~~-~~~ 283 (406)
T 1xi9_A 230 SLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKLSEVREAIDRLA-----------------------R-IR-LCP 283 (406)
T ss_dssp HHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTTHHHHHHHHHHH-----------------------H-HT-CCS
T ss_pred HcCCCceEEEEeccccccC-CCccEEEEEEEecCchhHHHHHHHHHHHH-----------------------H-hh-cCC
Confidence 2 356 899999999998 667 89999 787 7766554321 0 11 345
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
+....+++.++++...+ +++++.+++.++++++.+.|+++ +++++..+.. +.++++.++...+
T Consensus 284 ~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~~~~~~~~~-- 346 (406)
T 1xi9_A 284 NTPAQFAAIAGLTGPMD-YLKEYMKKLKERRDYIYKRLNEI------PGISTTKPQG--------AFYIFPKIEVGPW-- 346 (406)
T ss_dssp CSHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHHHHHHHHTS------TTEECCCCCB--------SSEECCEECSCSC--
T ss_pred CHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhC------CCCeeecCCe--------eEEEEEecCccCC--
Confidence 55556666666653212 26788899999999999999987 3677765432 4566667653101
Q ss_pred cCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 412 FGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
.+..++.+.|. ++||.+++|..|... ..+++|||++ ++.+++++
T Consensus 347 ~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~lRis~~--~~~~~i~~ 391 (406)
T 1xi9_A 347 KNDKEFVLDVLHNAHVLFVHGSGFGEY---------------------------------GAGHFRAVFL--PPIEILEE 391 (406)
T ss_dssp SSHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTBEEEECC--SCHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCchhcCCC---------------------------------CCCEEEEEec--CCHHHHHH
Confidence 23455777775 899999988655321 2578999998 89999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
+++.|+++++.
T Consensus 392 ~~~~l~~~l~~ 402 (406)
T 1xi9_A 392 AMDRFEKFMKE 402 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 82
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.96 E-value=8.5e-28 Score=248.12 Aligned_cols=325 Identities=13% Similarity=0.085 Sum_probs=229.4
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CC--CCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NA--SMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~--~~~~~~i~~t~g 111 (508)
++.++|+.+... ++++.+.+++.+.+ ... ...|..... ..++++.+++++ |+ +++ +|++|+|
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~----~~~y~~~~g----~~~lr~~la~~~~~~~g~~~~~~--~v~~~~g 109 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFL-QKG----EVKYTDPRG----IYELREGIAKRIGERYKKDISPD--QVVVTNG 109 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHH-TTC----CCCCCCTTC----CHHHHHHHHHHHHHHHTCCCCGG--GEEEESH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHH-hcC----CCCCCCCCC----CHHHHHHHHHHHHHHhCCCCCHH--HEEEecC
Confidence 578999888765 34677777765544 221 112221111 244555555555 75 566 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+|+.+++.++ ..+|++|+++...|+++.... +..|.+++.+|.+.+ ..+ |+++++
T Consensus 110 ~t~al~~~~~~l-~~~gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~~---------------d~~~l~-- 168 (389)
T 1o4s_A 110 AKQALFNAFMAL-LDPGDEVIVFSPVWVSYIPQI---ILAGGTVNVVETFMSKNFQP---------------SLEEVE-- 168 (389)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHHH---HHTTCEEEEEECCGGGTTCC---------------CHHHHH--
T ss_pred HHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHH---HHcCCEEEEEecCCccCCCC---------------CHHHHH--
Confidence 999999999998 678899999998888876544 456999999998742 233 688888
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC---CCCCCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ---PPDLSK 263 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~---~~d~~~ 263 (508)
+++ ++++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+.. +.++..
T Consensus 169 ~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~------------~~~~li~Dea~~~~~~~g~~~~~~~ 230 (389)
T 1o4s_A 169 GLL------VGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKK------------RNFYIISDEVYDSLVYTDEFTSILD 230 (389)
T ss_dssp HTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTSBCSSCCCCHHH
T ss_pred Hhc------ccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHH------------cCCEEEEEccccccccCCCCCCHhh
Confidence 555 357899999999999999999 5666666665 9999999999986543 223221
Q ss_pred ----CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 264 ----YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 264 ----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
.+.|+++.|+||++| ++| +|++++++++++.+.+...++ . .+.+.....
T Consensus 231 ~~~~~~~~i~~~s~sK~~~-~~G~r~G~l~~~~~~~~~l~~~~~~~-----------------------~-~~~~~~~~~ 285 (389)
T 1o4s_A 231 VSEGFDRIVYINGFSKSHS-MTGWRVGYLISSEKVATAVSKIQSHT-----------------------T-SCINTVAQY 285 (389)
T ss_dssp HCSSSTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHHHHHHHHH-----------------------T-CSCCHHHHH
T ss_pred cCCCCCcEEEEeechhhcC-CcccceEEEEeCHHHHHHHHHHhhhc-----------------------c-cCCCHHHHH
Confidence 368999999999998 667 899999988877665432110 1 122333333
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
++ ...+.. +++++.+++.++++++.+.|+++ +++++.+.. +.++++.++ . +..++
T Consensus 286 a~---~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~-~-----~~~~l 340 (389)
T 1o4s_A 286 AA---LKALEV-DNSYMVQTFKERKNFVVERLKKM-------GVKFVEPEG--------AFYLFFKVR-G-----DDVKF 340 (389)
T ss_dssp HH---HHHTTC-CCHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCSB--------SSEEEEECS-S-----CHHHH
T ss_pred HH---HHHHhc-cHHHHHHHHHHHHHHHHHHHHhc-------CCeeecCCc--------ceEEEEeCC-C-----CHHHH
Confidence 33 333333 48899999999999999999886 455554432 567777775 2 23457
Q ss_pred HHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 418 EKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 418 ~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.+.|. ++||.+++|..|.. ++++|+|++. +.++++++++.|.
T Consensus 341 ~~~l~~~~gi~v~~g~~f~~-----------------------------------~~~~Ris~~~--~~~~l~~~l~~l~ 383 (389)
T 1o4s_A 341 CERLLEEKKVALVPGSAFLK-----------------------------------PGFVRLSFAT--SIERLTEALDRIE 383 (389)
T ss_dssp HHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEECCS--CHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCchhcCC-----------------------------------CCeEEEEEeC--CHHHHHHHHHHHH
Confidence 77775 89999998754321 4689999994 9999999999988
Q ss_pred hhhh
Q 010538 497 DFVN 500 (508)
Q Consensus 497 ~~~~ 500 (508)
++++
T Consensus 384 ~~l~ 387 (389)
T 1o4s_A 384 DFLN 387 (389)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7653
No 83
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.96 E-value=6.1e-28 Score=256.26 Aligned_cols=362 Identities=9% Similarity=-0.055 Sum_probs=248.2
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC-------ceEEEcCCh
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD-------YKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~-------~~i~~t~g~ 112 (508)
..-|+++-.++..++..+.+++...+. .....+..+.....+.+++.+++++++|.+.+. -..+||+|+
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~l~~~~n----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~gg 148 (475)
T 3k40_A 73 SPKFHAYFPTANSYPAIVADMLSGAIA----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTA 148 (475)
T ss_dssp CTTBCCSSCCCCCHHHHHHHHHHHHHC----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCH
T ss_pred CcCceeeCCCCCcHHHHHHHHHHHHhC----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCch
Confidence 355888876666566666555544432 222234455667788888999999999997520 158999999
Q ss_pred HHHHHHHHhhcCC------------------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFPW------------------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~~------------------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
|+++.+++.+... .++.+|+++..+|+++....++ .|++++.||.+.++ +
T Consensus 149 t~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~---~g~~~~~v~~d~~~-~-------- 216 (475)
T 3k40_A 149 SESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLL---GGVKLRSVQSENHR-M-------- 216 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHH---HTCEEEEECCBTTB-C--------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHH---cCCceEEEECCCCC-c--------
Confidence 9998877665421 1245899999999998776554 48999999998777 7
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC 254 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~ 254 (508)
|+++++ ++|.+.......+.+|++++++|++|.+.|+++|.++|++ +|+++++|++++.
T Consensus 217 -------d~~~L~--~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~------------~~~~lhvD~A~~~ 275 (475)
T 3k40_A 217 -------RGAALE--KAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK------------HNLWIHVDAAYAG 275 (475)
T ss_dssp -------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTGG
T ss_pred -------CHHHHH--HHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH------------hCCeEEEeHHhHH
Confidence 688888 6664321112237889999999999999999999999998 9999999999987
Q ss_pred CCCCCC-C----CC-CCCcEEEEeccccccCCCcceEEEEechhH-h-hh--ccccccCceEEecccchhhhhhccCccc
Q 010538 255 VTQPPD-L----SK-YPVDFVVMSFYKIFGYPTGLGALIMRNDAA-K-LL--KNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 255 g~~~~d-~----~~-~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~-~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+....+ . .. ..+|++++|+|||+++|.|+|+++++++.. . .+ .+.+.......... ++ ...
T Consensus 276 ~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~---~~------~~~ 346 (475)
T 3k40_A 276 SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP---DY------RHW 346 (475)
T ss_dssp GGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC----------------------------------
T ss_pred HHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC---Cc------ccc
Confidence 643221 1 11 146999999999888899999999987642 1 11 11111110000000 00 011
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
..+.+.+ ...+.++++++.+...|++++.++..++++++.+.|+++ ++++++.++. .++++|++
T Consensus 347 ~~~~sr~--~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~l~~~~~--------~~iv~f~~ 410 (475)
T 3k40_A 347 QIPLGRR--FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD------SRFELAAEIN--------MGLVCFRL 410 (475)
T ss_dssp --CCCGG--GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEESSCCB--------TTEEEEEE
T ss_pred cccCCCc--ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCc--------eEEEEEEe
Confidence 1222222 245677888888887889999999999999999999998 4799987653 78999998
Q ss_pred eCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC-CCC
Q 010538 405 KRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG-YMS 483 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~ 483 (508)
++.+ ....++.+.|.++|+.+.... .. .....+|++++ +.+
T Consensus 411 ~~~~---~~~~~l~~~L~~~g~~~~~~~---~~--------------------------------~g~~~lR~~~~~~~t 452 (475)
T 3k40_A 411 KGSN---ERNEALLKRINGRGHIHLVPA---KI--------------------------------KDVYFLRMAICSRFT 452 (475)
T ss_dssp SSCH---HHHHHHHHHHHHHTSCBCEEE---EE--------------------------------TTEEEEEEECCCTTC
T ss_pred CCch---HHHHHHHHHHHhCCcEEEEee---EE--------------------------------CCEEEEEEEeCCCCC
Confidence 6531 122457788877776542210 00 01478999987 456
Q ss_pred CHHHHHHHHHhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~ 501 (508)
|.+||++++++|+++.+.
T Consensus 453 t~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 453 QSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987754
No 84
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.96 E-value=6.1e-27 Score=239.39 Aligned_cols=355 Identities=8% Similarity=0.021 Sum_probs=233.5
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC--CC
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP--WS 126 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~--~~ 126 (508)
.+++++.+++++.+.+ ...+.+| ....+++++.+++++|++ ++++|+|+|+|+.+++.++. .+
T Consensus 8 ~~~~~~~v~~a~~~~~-~~~~~~~----------~~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVL-NSKQLTQ----------GKRSLLFEEALCEFLGVK----HALVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHH-TSSCCSS----------SHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCHHHHHHHHHHH-HcCcccC----------ChHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHhcccCC
Confidence 4667888988876644 3222122 234678999999999986 59999999999999999985 67
Q ss_pred CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEE
Q 010538 127 HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFA 206 (508)
Q Consensus 127 ~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~ 206 (508)
+|++|+++...|+++...+. ..|++++.++.+.++.+ |+++++ +++ ++++++|+
T Consensus 73 ~gd~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~---------------d~~~l~--~~i------~~~~~~v~ 126 (375)
T 2fnu_A 73 DRNEIITTPISFVATANMLL---ESGYTPVFAGIKNDGNI---------------DELALE--KLI------NERTKAIV 126 (375)
T ss_dssp TSCEEEECSSSCTHHHHHHH---HTTCEEEECCBCTTSSB---------------CGGGSG--GGC------CTTEEEEE
T ss_pred CCCEEEECCCccHhHHHHHH---HCCCEEEEeccCCCCCC---------------CHHHHH--hhc------CcCceEEE
Confidence 88999999999988766544 46999999998765544 577888 554 45788888
Q ss_pred EeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC--CCCCCCcEEEE--eccccccCCCc
Q 010538 207 FPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD--LSKYPVDFVVM--SFYKIFGYPTG 282 (508)
Q Consensus 207 ~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d--~~~~~~D~~~~--S~~K~~g~P~G 282 (508)
++++ ||.+.|+++|.++|++ +|+++|+|++|+.|..+.. +..++ |+.+. |+||+++ | |
T Consensus 127 ~~~~---tG~~~~l~~i~~l~~~------------~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~-~-g 188 (375)
T 2fnu_A 127 SVDY---AGKSVEVESVQKLCKK------------HSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPIT-T-A 188 (375)
T ss_dssp EECG---GGCCCCHHHHHHHHHH------------HTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSC-C-S
T ss_pred EeCC---cCCccCHHHHHHHHHH------------cCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCcc-c-c
Confidence 7776 9999999999999997 8999999999998876533 33332 45544 5559998 8 8
Q ss_pred ceEEEEe--chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh-HHHHHHHHHHHHHhcChHHHHHHHH
Q 010538 283 LGALIMR--NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL-SIASIRHGFNLINSLTVPAICRHIA 359 (508)
Q Consensus 283 ~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~l~~al~~~~~~g~~~i~~~~~ 359 (508)
+|+++++ +++.+.+.+...++.. . .. ..+++.++.++. .+..+.+++.+....+++++.++.+
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 254 (375)
T 2fnu_A 189 EGGAVVTNDSELHEKMKLFRSHGML-K--KD-----------FFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKRE 254 (375)
T ss_dssp SCEEEEESCHHHHHHHHHHTBTTEE-E--SS-----------SSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHhcCCc-c--cc-----------ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 4566666654333221 0 00 111111111110 1112222223323356888999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCcc-CHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 360 SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWF-GYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 360 ~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
++++++.+.|+++ +++++..+.... .....++++.++.. .+ +..++.+.|.++||.++.+ |.+..
T Consensus 255 ~~~~~l~~~L~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gi~v~~~--~~p~~ 320 (375)
T 2fnu_A 255 EAALTYDRIFKDN------PYFTPLHPLLKD---KSSNHLYPILMHQK---FFTCKKLILESLHKRGILAQVH--YKPIY 320 (375)
T ss_dssp HHHHHHHHHHTTC------SSEEESGGGCSS---CCCCSCEEEEECGG---GGGGHHHHHHHHHHTTEECBCC--CCCGG
T ss_pred HHHHHHHHHhhcC------CCccccCCCCCC---CcceEEEEEEeCcc---ccchHHHHHHHHHHCCCCcccc--ccccc
Confidence 9999999999987 368887652110 01134556676531 02 3356888999999999843 43221
Q ss_pred HHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 439 CAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 439 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+++.++...+-+ .......+.+||+++.++|.+|+++++++|+++++.+
T Consensus 321 -----------~~~~~~~~~~~~~~~-~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 321 -----------QYQLYQQLFNTAPLK-SAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp -----------GSHHHHHHHCCCCCH-HHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------cchhhhcCCCccCCh-HHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111111000000000 0000014789999999999999999999999887654
No 85
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.96 E-value=9.1e-28 Score=255.49 Aligned_cols=365 Identities=11% Similarity=-0.015 Sum_probs=246.2
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHcCCCCC-------CceEEEcCC
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYFNASMK-------DYKCIFTSG 111 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~~~~~~-------~~~i~~t~g 111 (508)
...|+++..+++.++..+..++...+ |+. ..+..+.....+.+++++++++++|++.+ ...+++|+|
T Consensus 73 ~p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~g 147 (486)
T 1js3_A 73 SPYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS 147 (486)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC
T ss_pred CCCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCC
Confidence 34688887766666666655555443 232 23444555677778899999999999742 016899999
Q ss_pred hHHHHHHHHhhcCCC--C------C---------C-eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 112 ATAALKLVGEAFPWS--H------Q---------S-SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 112 ~t~al~~~~~~l~~~--~------g---------~-~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
+|+|+.+++.++... + | + +|+++...|+++....+. .|++++.||.+.++.+
T Consensus 148 gTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~---~G~~v~~v~~d~~~~~------- 217 (486)
T 1js3_A 148 ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLI---GGVKLKAIPSDGKFAM------- 217 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHH---HTCEEEEECCCTTSCC-------
T ss_pred cHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHh---CCCceEEeecCCCCCC-------
Confidence 999998887665211 0 2 2 378899999887665554 4999999999766666
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ ++|.+....+..+.+|++++++|+||.+.|+++|.++|++ +|+++|+|++++
T Consensus 218 --------d~~~L~--~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~------------~~~~lhvD~a~g 275 (486)
T 1js3_A 218 --------RASALQ--EALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHE------------EDIWLHVDAAYA 275 (486)
T ss_dssp --------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------TTCEEEEECTTG
T ss_pred --------CHHHHH--HHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCEEEEehhhH
Confidence 688888 5553210011122489999999999999999999999998 999999999998
Q ss_pred CCCCCC-CCCC-----CCCcEEEEeccccccCCCcceEEEEechh--Hhhhc--cccccCceEEecccchhhhhhccCcc
Q 010538 254 CVTQPP-DLSK-----YPVDFVVMSFYKIFGYPTGLGALIMRNDA--AKLLK--NTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 254 ~g~~~~-d~~~-----~~~D~~~~S~~K~~g~P~G~G~l~~~~~~--~~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
.+.... ++.. .++|++++|+|||++.|.|+|+++++++. .+.+. +.+..+..... ....++. .
T Consensus 276 ~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~-~~~~~~~------~ 348 (486)
T 1js3_A 276 GSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS-GLITDYR------H 348 (486)
T ss_dssp GGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C-CSCCCGG------G
T ss_pred HHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccc-cCCCCcc------c
Confidence 766433 2221 26899999999998878899999998763 23332 21211110000 0000000 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.....+. .+ ...+++++++.+...|++++.+++.++++++.+.|+++ ++++++.++. .++++|+
T Consensus 349 ~~~~~~r-r~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~--------~~~v~f~ 412 (486)
T 1js3_A 349 WQLPLGR-RF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD------PRFEVCAEVT--------LGLVCFR 412 (486)
T ss_dssp SSSCSCC-CC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECSCCC--------SSEEEEE
T ss_pred cCCCCCC-ch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEeCCCc--------eeEEEEE
Confidence 0111111 11 24567777777666789999999999999999999987 4799886543 6889998
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEec-CCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSF-GYM 482 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~ 482 (508)
+++.+ .+ ..++.+.|.++|+.+..+..+ + ..+++|+++ +.+
T Consensus 413 ~~~~~--~~-~~~l~~~L~~~g~~~~~~~~~---------------------------------~--~~~~lRi~~~~~~ 454 (486)
T 1js3_A 413 LKGSD--GL-NEALLERINSARKIHLVPCRL---------------------------------R--GQFVLRFAICSRK 454 (486)
T ss_dssp ESSCH--HH-HHHHHHHHHHHTSCBCEEEEE---------------------------------T--TEEEEEEECCCTT
T ss_pred ecChH--HH-HHHHHHHHHhcCCEEEEEEEE---------------------------------C--CEEEEEEEeCCCC
Confidence 86421 11 135777887788764332100 0 157899997 677
Q ss_pred CCHHHHHHHHHhhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~~ 502 (508)
+|.+||+++++.|+++++.+
T Consensus 455 ~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 86
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.96 E-value=2.4e-28 Score=252.81 Aligned_cols=340 Identities=13% Similarity=0.055 Sum_probs=236.5
Q ss_pred CCeeeeCCCCC--CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC--C-CCceEEEcCChHH
Q 010538 40 GTVYLDHAGAT--LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS--M-KDYKCIFTSGATA 114 (508)
Q Consensus 40 ~~iyld~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~--~-~~~~i~~t~g~t~ 114 (508)
+.+.|..+... ++++.+++++.+.+..... ..|.......++.+++.+.+++++|.+ + + +|++|+|+++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~----~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~--~i~~~~g~~~ 113 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGV----QAYTEYRGDLGIRDLLAPRLAAFTGAPVDARD--GLIITPGTQG 113 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHH----HHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTT--SEEEESHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCC----CCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--cEEEeCCcHH
Confidence 36788765433 4677788877654432100 011111224567788889999999984 2 5 7999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC------CccCccccccccccccccccchhhhhc
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE------EAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~------~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+.+++.++ ..+|++|+++...|+++. ..++..|++++.+|.+ ....+ |+++++
T Consensus 114 a~~~~~~~l-~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~---------------d~~~l~- 173 (407)
T 3nra_A 114 ALFLAVAAT-VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGL---------------DLTGLE- 173 (407)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCB---------------CHHHHH-
T ss_pred HHHHHHHHh-CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCc---------------CHHHHH-
Confidence 999999998 688999999887777655 4445579999999983 33333 678887
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC----CCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV----TQPPDL 261 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g----~~~~d~ 261 (508)
+++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.+ ....++
T Consensus 174 -~~l------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~Dea~~~~~~~g~~~~~~ 234 (407)
T 3nra_A 174 -EAF------KAGARVFLFSNPNNPAGVVYSAEEIGQIAALAAR------------YGATVIADQLYSRLRYAGASYTHL 234 (407)
T ss_dssp -HHH------HTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTSBCTTCCCCCG
T ss_pred -HHH------hhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHH------------cCCEEEEEccccccccCCCCCCCh
Confidence 554 346789999999999999999 5666666665 99999999999862 222332
Q ss_pred C-----CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 262 S-----KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 262 ~-----~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
. ..+.++++.|+||++| ++| +|++++++++++.+...... ...+.+..
T Consensus 235 ~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~~------------------------~~~~~~~~ 289 (407)
T 3nra_A 235 RAEAAVDAENVVTIMGPSKTES-LSGYRLGVAFGSRAIIARMEKLQAI------------------------VSLRAAGY 289 (407)
T ss_dssp GGCTTSCGGGEEEEECSSSTTC-CGGGCCEEEEECHHHHHHHHHHHHH------------------------HTSSSCHH
T ss_pred hhcCcccCCcEEEEeCcccccC-CCeeeEEEEEcCHHHHHHHHHHHhh------------------------hccCCChH
Confidence 2 2346799999999998 546 79999998887766543110 11222333
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..+++.++++. ....+++..++++++++++.+.|+++ ++++++.+.. +.++++.++... .+.
T Consensus 290 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~--------~~~~~~~~~~~~---~~~ 351 (407)
T 3nra_A 290 SQAVLRGWFDE-APGWMEDRIARHQAIRDELLHVLRGC------EGVFARTPQA--------GSYLFPRLPKLA---VAP 351 (407)
T ss_dssp HHGGGGGTTCC-CTTHHHHHHHHHHHHHHHHHHHHHTS------TTCBCCCCSB--------SSEECCBCCCBS---SCH
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhcC------CCceeccCCe--------eEEEEEeCCCCC---CCH
Confidence 33333333321 11235778889999999999999887 3677665543 577777765421 234
Q ss_pred HHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 415 REVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 415 ~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
.++.+.|. ++||.+++|..|.+. ..+++|+|++. |.++++++++
T Consensus 352 ~~~~~~l~~~~gi~v~~g~~~~~~---------------------------------~~~~iRis~~~--~~~~i~~~~~ 396 (407)
T 3nra_A 352 AEFVKILRLQAGVVVTPGTEFSPH---------------------------------TADSVRLNFSQ--DHEAAVAAAR 396 (407)
T ss_dssp HHHHHHHHHHHCEECEEGGGTCTT---------------------------------CTTBEEEECCS--CHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCEEEEEeCC--CHHHHHHHHH
Confidence 55777775 569999998776532 26889999995 9999999999
Q ss_pred hhhhhhhhh
Q 010538 494 SSFDFVNFS 502 (508)
Q Consensus 494 ~~~~~~~~~ 502 (508)
.|+++++.+
T Consensus 397 ~l~~~~~~~ 405 (407)
T 3nra_A 397 RIVTLVERY 405 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
No 87
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.96 E-value=3.7e-28 Score=251.03 Aligned_cols=340 Identities=11% Similarity=0.018 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCC--CccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPH--SQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t 113 (508)
++++.|..+... ++++.+.+++.+.+. .. ++. ..|.......++.+++.+.+.+.+| ++++ +|++|+|+|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~--~i~~~~g~~ 109 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVT-DY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNAD--NLYMTMGAA 109 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHH-HS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG--GEEEESSHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHh-cC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChH--HEEEccCHH
Confidence 468888877654 456777776655432 21 110 0111111123444455555555556 5666 899999999
Q ss_pred HHHHHHHhhcCCCCC-CeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCC
Q 010538 114 AALKLVGEAFPWSHQ-SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 114 ~al~~~~~~l~~~~g-~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+.+++.++ .++| ++|++....|+++. ..++..|.+++.+|.+.+ ..+ |+++++ ++
T Consensus 110 ~al~~~~~~l-~~~g~d~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~ 168 (398)
T 3ele_A 110 ASLSICFRAL-TSDAYDEFITIAPYFPEYK---VFVNAAGARLVEVPADTEHFQI---------------DFDALE--ER 168 (398)
T ss_dssp HHHHHHHHHH-CCSTTCEEEEESSCCTHHH---HHHHHTTCEEEEECCCTTTSSC---------------CHHHHH--HT
T ss_pred HHHHHHHHHH-cCCCCCEEEEeCCCchhhH---HHHHHcCCEEEEEecCCcCCcC---------------CHHHHH--HH
Confidence 9999999998 6788 99998887776554 445567999999998753 233 688998 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC------CCeEEEEeccccC----C-CCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK------GRWMVLIDAAKGC----V-TQPPD 260 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~------~g~~vivD~a~~~----g-~~~~d 260 (508)
+ .+++++|++++++||||.++|.+++.++++ +|++ +|+++|+|++|+. | ..+..
T Consensus 169 l------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 233 (398)
T 3ele_A 169 I------NAHTRGVIINSPNNPSGTVYSEETIKKLSD---------LLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV 233 (398)
T ss_dssp C------CTTEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG
T ss_pred h------CcCCCEEEEcCCCCCCCCCCCHHHHHHHHH---------HHHhhhhccCCCeEEEEeccccccccCCCCcCCh
Confidence 5 457899999999999999999888887766 5656 7999999999985 2 12222
Q ss_pred CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhh--hccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL--LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
....+.++++.|+||++| ++| +|+++++++..+. +...+.. + .......+++....
T Consensus 234 ~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~------------~-------~~~~~~~~~~~~~~ 293 (398)
T 3ele_A 234 TKYYDNTLVCYSYSKSLS-LPGERIGYVLVPDEVYDKAELYAAVCG------------A-------GRALGYVCAPSLFQ 293 (398)
T ss_dssp GGTCSSEEEEEESTTTSS-CTTTCCEEEECCTTSTTHHHHHHHHHH------------H-------HHHTTCCCSCHHHH
T ss_pred HhhcCCeEEEEehhhcCC-CccceeEEEEEcchhhhHHHHHHHHHH------------H-------hhhccccCCCHHHH
Confidence 234467799999999998 446 8999999875431 1111000 0 00111122333333
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
.++. ..+.... ..+++.++++++.+.|+++ +++++.+.. +.++++.+++. +..+
T Consensus 294 ~a~~---~~l~~~~---~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~-----~~~~ 347 (398)
T 3ele_A 294 KMIV---KCQGATG---DINAYKENRDLLYEGLTRI-------GYHCFKPDG--------AFYMFVKALED-----DSNA 347 (398)
T ss_dssp HHHT---TCTTCCC---CHHHHHHHHHHHHHHHHHH-------TCCEECCSB--------SSEEEEECSSS-----CHHH
T ss_pred HHHH---HHhcCHH---HHHHHHHHHHHHHHHHHHc-------CCeecCCCe--------eEEEEEEcCCC-----CHHH
Confidence 3333 2222221 4677888999999999886 466665543 56688887653 2345
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
+.+.|.++||.+++|..|.. ++++|||++ ++.++++++++.|+
T Consensus 348 ~~~~l~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~--~~~e~i~~~l~~l~ 390 (398)
T 3ele_A 348 FCEKAKEEDVLIVAADGFGC-----------------------------------PGWVRISYC--VDREMIKHSMPAFE 390 (398)
T ss_dssp HHHHHHTTTEECEESGGGTC-----------------------------------TTEEEEECC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCccccCC-----------------------------------CCeEEEEec--CCHHHHHHHHHHHH
Confidence 88889999999999875532 478999997 69999999999999
Q ss_pred hhhhhh
Q 010538 497 DFVNFS 502 (508)
Q Consensus 497 ~~~~~~ 502 (508)
++++.+
T Consensus 391 ~~l~~~ 396 (398)
T 3ele_A 391 KIYKKY 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887654
No 88
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=8.7e-28 Score=249.86 Aligned_cols=344 Identities=12% Similarity=0.026 Sum_probs=237.5
Q ss_pred CCCeeeeCCC-----CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------------CCC
Q 010538 39 NGTVYLDHAG-----ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------------ASM 101 (508)
Q Consensus 39 ~~~iyld~~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------------~~~ 101 (508)
++.++|+.+. ..++++.+.+++.+.+... ....|.. .....++|+.++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~----~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----ECNGYFP----TVGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----CSSSCCC----TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCC----ccCCcCC----CCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 4689998876 3566888888775544221 0111211 1124566778888877 667
Q ss_pred CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccccc
Q 010538 102 KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISL 181 (508)
Q Consensus 102 ~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~ 181 (508)
+ +|++|+|+++|+.+++.++ .++|++|+++...|+++.. .++..|++++.+|.+.+... ..
T Consensus 105 ~--~v~~~~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~-------------~~ 165 (416)
T 1bw0_A 105 D--NVVLCSGGSHGILMAITAI-CDAGDYALVPQPGFPHYET---VCKAYGIGMHFYNCRPENDW-------------EA 165 (416)
T ss_dssp G--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESCCTHHHH---HHHHTTCEEEEEEEEGGGTT-------------EE
T ss_pred c--eEEEeCChHHHHHHHHHHh-CCCCCEEEEcCCCcHhHHH---HHHHcCcEEEEeecCcccCC-------------CC
Confidence 7 8999999999999999998 6788999999888877654 44567999999987643111 11
Q ss_pred chhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----
Q 010538 182 LPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---- 254 (508)
Q Consensus 182 d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---- 254 (508)
|+++++ +++ .++++++++++++||||.++| +++|.++|++ +|+++|+|++|+.
T Consensus 166 d~~~l~--~~l------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~ 225 (416)
T 1bw0_A 166 DLDEIR--RLK------DDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEE------------LRLPLFSDEIYAGMVFK 225 (416)
T ss_dssp CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCCEEEECTTTTCBCC
T ss_pred CHHHHH--HHh------ccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHH------------cCCEEEEEccccccccC
Confidence 678888 554 356899999999999999999 6666666665 9999999999986
Q ss_pred CC----CCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEech--hHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 255 VT----QPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRND--AAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 255 g~----~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
|. ...++... +.++++.|+||+|+.| | +|+++++++ .++.+.+... .
T Consensus 226 g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-Glr~G~~~~~~~~~~~~~~~~~~~---------------------~ 283 (416)
T 1bw0_A 226 GKDPNATFTSVADFETTVPRVILGGTAKNLVVP-GWRLGWLLYVDPHGNGPSFLEGLK---------------------R 283 (416)
T ss_dssp SSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG-GGCCEEEEEECTTCSCHHHHHHHH---------------------H
T ss_pred CCCCCCCccCHHHccCCCcEEEEecchhhCCCC-CceEEEEEeeCchhhHHHHHHHHH---------------------H
Confidence 32 22334332 2357889999998834 6 799999874 4333321100 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.....++++....+++.++++...+.+++++.++++++++++.+.|+++ ++++++.+.. ++++++.
T Consensus 284 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~--------~~~~~~~ 349 (416)
T 1bw0_A 284 VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC------IGLAPTMPRG--------AMYLMSR 349 (416)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS------TTEEECCCCB--------TTEEEEE
T ss_pred HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCCe--------eEEEEEe
Confidence 0011245666667777777764223357888899999999999999887 3688765543 6788888
Q ss_pred eeCCC-CCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 404 LKRPD-GSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 404 ~~~~~-~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
++... ....+..++.+.| +++||.+++|..|.. ++++|||++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------------------------~~~iRis~~- 393 (416)
T 1bw0_A 350 IDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-----------------------------------PGFTRLTTT- 393 (416)
T ss_dssp ECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEECC-
T ss_pred CCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-----------------------------------CCeEEEEec-
Confidence 75310 0001334566666 689999998764421 478999996
Q ss_pred CCCHHHHHHHHHhhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~ 502 (508)
++.++++.+++.|.++++..
T Consensus 394 -~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 394 -RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHh
Confidence 68999999999998877543
No 89
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.96 E-value=1.7e-27 Score=245.19 Aligned_cols=337 Identities=11% Similarity=0.050 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.++|+.+.... +++.+.+++.+...... ..|.......++.+++.+.+.+.+|+ +++ +|++|+|+|+|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~--~v~~~~g~~~a 102 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-----TRYGPAAGEPRLREAIAQKLQRDNGLCYGAD--NILVTNGGKQS 102 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-----CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG--GEEEESHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcCC-----CCCCCCCCCHHHHHHHHHHHHHhcCCCCChh--hEEEcCCHHHH
Confidence 5688888876543 46677776655432211 11221111234444455555555564 556 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc--cCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA--VDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~--~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ .++|++|+++...|+++... ++..|.+++.+|.+.+ ..+ |+++++ +++
T Consensus 103 ~~~~~~~~-~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l- 160 (388)
T 1j32_A 103 IFNLMLAM-IEPGDEVIIPAPFWVSYPEM---VKLAEGTPVILPTTVETQFKV---------------SPEQIR--QAI- 160 (388)
T ss_dssp HHHHHHHH-CCTTCEEEEESSCCTHHHHH---HHHTTCEEEEECCCGGGTTCC---------------CHHHHH--HHC-
T ss_pred HHHHHHHh-cCCCCEEEEcCCCChhHHHH---HHHcCCEEEEecCCcccCCCC---------------CHHHHH--Hhc-
Confidence 99999998 67899999999888876544 4457999999998742 233 678888 555
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----CCCCCC---
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----PPDLSK--- 263 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~~d~~~--- 263 (508)
.+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+.... ..++..
T Consensus 161 -----~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~ 223 (388)
T 1j32_A 161 -----TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVE------------AGLWVLSDEIYEKILYDDAQHLSIGAASP 223 (388)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred -----CcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEEccchhcccCCCCCCCHHHccc
Confidence 357899999999999999988 5555666665 9999999999976332 222222
Q ss_pred --CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 264 --YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 264 --~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
.+.|+++.|+||++| ++| +|++++++++++.+.+...++ . .+.+....+++
T Consensus 224 ~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~~~-----------------------~-~~~~~~~~~a~ 278 (388)
T 1j32_A 224 EAYERSVVCSGFAKTYA-MTGWRVGFLAGPVPLVKAATKIQGHS-----------------------T-SNVCTFAQYGA 278 (388)
T ss_dssp HHHHTEEEEEESTTTTT-CTTTCCEEEECCHHHHHHHHHHHHTT-----------------------T-CSCCHHHHHHH
T ss_pred cccCCEEEEeechhccC-CcccceEEEEeCHHHHHHHHHHHhhc-----------------------c-cCCCHHHHHHH
Confidence 347899999999998 668 899999998877665431111 1 12233333333
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.. +..++++.+++.++++++.+.|+++ +++++..+.. +.++++.++.. + .+..++.+
T Consensus 279 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~--------~~~~~~~~~~~-~--~~~~~~~~ 340 (388)
T 1j32_A 279 IAAYENS-QDCVQEMLAAFAERRRYMLDALNAM------PGLECPKPDG--------AFYMFPSIAKT-G--RSSLDFCS 340 (388)
T ss_dssp HHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTC------TTCBCCCCCB--------TTEECCBCGGG-T--CCHHHHHH
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhC------CCCcccCCCe--------eEEEEEecCCC-C--CCHHHHHH
Confidence 3444421 2236778889999999999999887 3676665432 45566666431 1 23455777
Q ss_pred HHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.|.+ +||.+++|..|.. ++++|+|++ ++.++++++++.|+++
T Consensus 341 ~l~~~~gi~v~~g~~~~~-----------------------------------~~~iRis~~--~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 341 ELLDQHQVATVPGAAFGA-----------------------------------DDCIRLSYA--TDLDTIKRGMERLEKF 383 (388)
T ss_dssp HHHHHHCEECEEGGGGTC-----------------------------------TTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEeChhhhCC-----------------------------------CCcEEEEec--CCHHHHHHHHHHHHHH
Confidence 7764 7999998764321 468999997 6999999999999887
Q ss_pred hhh
Q 010538 499 VNF 501 (508)
Q Consensus 499 ~~~ 501 (508)
++.
T Consensus 384 l~~ 386 (388)
T 1j32_A 384 LHG 386 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 90
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.96 E-value=2.6e-28 Score=252.38 Aligned_cols=345 Identities=14% Similarity=0.052 Sum_probs=233.6
Q ss_pred CCCeeeeCCCCCC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
+++++|+.+...+ +++.+.+++.+.+ ...... ...|.. .....++++.+++++|++++ +|++|+|+++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~-~~~~~~-~~~y~~----~~~~~~l~~~la~~~g~~~~--~v~~~~g~~~a 103 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARIL-REKGEV-ALQYSP----TEGYAPLRAFVAEWIGVRPE--EVLITTGSQQA 103 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHH-HHHHHH-HTSCCC----TTCCHHHHHHHHHHHTSCGG--GEEEESHHHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHH-Hhcchh-hhCCCC----CCCCHHHHHHHHHHhCCChh--hEEEeccHHHH
Confidence 5788998765432 3555666554433 211000 001111 11246788999999998877 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ .++|++|++....|+++. ..++..|.+++.+|.+.++ + |+++++ +++++
T Consensus 104 l~~~~~~~-~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~-~---------------d~~~l~--~~l~~- 160 (397)
T 2zyj_A 104 LDLVGKVF-LDEGSPVLLEAPSYMGAI---QAFRLQGPRFLTVPAGEEG-P---------------DLDALE--EVLKR- 160 (397)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEEETTE-E---------------CHHHHH--HHHHH-
T ss_pred HHHHHHHh-CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEecCcCCCC-C---------------CHHHHH--HHHhh-
Confidence 99999998 578899998876666554 4455679999999886543 3 577777 44421
Q ss_pred CCCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCCCC-----
Q 010538 196 DPAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSKYP----- 265 (508)
Q Consensus 196 ~~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~~~----- 265 (508)
.++++| ++++++||||.++|.+.+.++++ +|+++|+++|+|++|+.+. .+.++..++
T Consensus 161 ----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 227 (397)
T 2zyj_A 161 ----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQ---------MVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGY 227 (397)
T ss_dssp ----CCCSCEEECCBSCTTTCCBCCHHHHHHHHH---------HHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTC
T ss_pred ----cCCeEEEECCCCcCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCC
Confidence 256777 57999999999999884444443 3334999999999998633 234444333
Q ss_pred -CcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 266 -VDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 266 -~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
..+++.|+||+++ |+ ++|++++++++++.+.+... .+..++ +.....++.+++
T Consensus 228 ~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~-----------------------~~~~~~-~~~~~~a~~~~l 282 (397)
T 2zyj_A 228 PGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ-----------------------GADLHT-PMLNQMLVHELL 282 (397)
T ss_dssp CCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH-----------------------HHHSSC-CHHHHHHHHHHH
T ss_pred CeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH-----------------------hhcCCC-CHHHHHHHHHHH
Confidence 3388999999999 72 37999999888776654311 111233 444444444444
Q ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 344 NLINSLTVPAICRHIASLGMYVRKVLLSLRHENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 344 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
+......++++.+++.++++++.+.|++.. + ++++..+.. +.+++++++.. .+..++.+.|.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~~~~--------g~~~~~~~~~~----~~~~~~~~~l~ 345 (397)
T 2zyj_A 283 KEGFSERLERVRRVYREKAQAMLHALDREV-----PKEVRYTRPKG--------GMFVWMELPKG----LSAEGLFRRAL 345 (397)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CTTSEECCCSB--------SSEEEEECSTT----CCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCeEEccCCc--------cEEEEEEcCCC----CCHHHHHHHHH
Confidence 421101367788888999999999997631 2 477665543 68888888642 34456888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
++||.+++|..|.... ...+++|||++.. |.+|++++++.|+++++.
T Consensus 346 ~~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 346 EENVAFVPGGPFFANG-------------------------------GGENTLRLSYATL-DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp HTTEEEEESGGGCTTS-------------------------------CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEechHHhcCCC-------------------------------CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 8899999987554310 1257899999986 999999999999987653
No 91
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.96 E-value=2.9e-27 Score=245.09 Aligned_cols=351 Identities=11% Similarity=0.006 Sum_probs=234.1
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCC-CCceEEEcC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASM-KDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~-~~~~i~~t~ 110 (508)
++.|+|+.+.... +++.+.+++.+.+..... ..|..... ..++++.++++++ +++ + +|++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~----~~y~~~~g----~~~l~~~la~~~~~~~~~~~~~~~--~i~~~~ 92 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNM----NQYTRGFG----HPALVKALSCLYGKIYQRQIDPNE--EILVAV 92 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGG----GSCCCTTC----CHHHHHHHHHHHHHHHTSCCCTTT--SEEEES
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccc----cCCCCCCC----hHHHHHHHHHHHHHHhCCCCCCCC--CEEEeC
Confidence 6799999988663 567777776554322100 01111111 2344555555554 555 5 799999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc---cCccccccccccccccccchhhhh
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA---VDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~---~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
|+++|+.+++.++ .++|++|++....|+++... ++..|.+++.+|.+.. +... .......|+++++
T Consensus 93 g~~~a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~g~~~-------~~~~~~~d~~~l~ 161 (410)
T 3e2y_A 93 GAYGSLFNSIQGL-VDPGDEVIIMVPFYDCYEPM---VRMAGAVPVFIPLRSKPTDGMKW-------TSSDWTFDPRELE 161 (410)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECEECCCCSSCC-------BGGGEECCHHHHH
T ss_pred CcHHHHHHHHHHh-cCCCCEEEEeCCCchhhHHH---HHHcCCEEEEEeccccccccccc-------cccCCcCCHHHHH
Confidence 9999999999998 67889999988777766544 4456999999987621 0000 0001122788998
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK 263 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~ 263 (508)
+++ .+++++|++++++||||.+++.+.+.++++ +|+++|+++|+|++|+. |..+.++..
T Consensus 162 --~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 224 (410)
T 3e2y_A 162 --SKF------SSKTKAIILNTPHNPLGKVYTRQELQVIAD---------LCVKHDTLCISDEVYEWLVYTGHTHVKIAT 224 (410)
T ss_dssp --TTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred --hhc------CCCceEEEEeCCCCCCCcCcCHHHHHHHHH---------HHHHcCcEEEEEhhhhhcccCCCCCCCHHH
Confidence 555 457899999999999999986555555544 34449999999999975 323333332
Q ss_pred C----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 264 Y----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 264 ~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
. +.++++.|++|.+| ++| +|++++++++++.+..... ....+.+.....
T Consensus 225 ~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 279 (410)
T 3e2y_A 225 LPGMWERTITIGSAGKTFS-VTGWKLGWSIGPAHLIKHLQTVQQ------------------------NSFYTCATPLQA 279 (410)
T ss_dssp STTCGGGEEEEEEHHHHSS-CGGGCCEEEECCHHHHHHHHHHHH------------------------TTTCCCCHHHHH
T ss_pred cCCccCeEEEEecchhhcC-CCCceEEEEEECHHHHHHHHHHHH------------------------hhccCCChHHHH
Confidence 2 34589999999998 556 8999999988776653311 112344555566
Q ss_pred HHHHHHHHH------HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 338 SIRHGFNLI------NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 338 ~l~~al~~~------~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
++.++++.. ....++.+.++++++++++.+.|+++ ++++..+.. +.++++.+......
T Consensus 280 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~~~~- 343 (410)
T 3e2y_A 280 ALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-------GLKPIVPDG--------GYFIIADVSSLGAD- 343 (410)
T ss_dssp HHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB--------SSEEEEECGGGCCC-
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCc--------cEEEEEEchhhhcc-
Confidence 666666521 12346888899999999999999987 577766644 67888887642211
Q ss_pred cC--------HHHHH-HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 412 FG--------YREVE-KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 412 ~~--------~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
++ ..++. ++++++||.+.+|..|..+... ....+++|||++.
T Consensus 344 ~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~~- 394 (410)
T 3e2y_A 344 LSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSK----------------------------PHFEKLVRFCFIK- 394 (410)
T ss_dssp CTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTH----------------------------HHHTTEEEEECCC-
T ss_pred cccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCC----------------------------CCCCCEEEEEEcC-
Confidence 11 11344 4567889999999877542100 0025899999886
Q ss_pred CCHHHHHHHHHhhhhh
Q 010538 483 STFEDAKVNRCSSFDF 498 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~ 498 (508)
|.++++++++.|+++
T Consensus 395 -~~e~l~~~l~~l~~~ 409 (410)
T 3e2y_A 395 -KDSTLDAAEEIFRAW 409 (410)
T ss_dssp -CHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHHhc
Confidence 999999999998764
No 92
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=4.8e-27 Score=243.37 Aligned_cols=333 Identities=15% Similarity=0.065 Sum_probs=225.6
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCC-CCccchhhhhhHHHHHHHHHHHHH--cC-CCCCCceEEEcCChH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNP-HSQSDISLATCDIVRAAREQVLDY--FN-ASMKDYKCIFTSGAT 113 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~la~~--~~-~~~~~~~i~~t~g~t 113 (508)
++.++|+.+... ++++.+.+++.+.+ ....... ...|.. .....++|+.++++ .| ++++ +|++|+|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~y~~----~~g~~~lr~~la~~l~~g~~~~~--~v~~~~G~~ 105 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSI-ARLSSPTTCRGYGP----DFGLPALRQKLSEDFYRGFVDAK--EIFISDGAK 105 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHH-HHHTSSSCCCCCCC----TTCCHHHHHHHHHTTSTTSSCGG--GEEEESCHH
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHH-hcccccccccCCCC----CCCCHHHHHHHHHHHHcCCCCHH--HEEEccChH
Confidence 578999988765 45777777765533 2221111 112211 12246788999999 47 6777 899999999
Q ss_pred HHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe-EEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 114 AALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA-AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 114 ~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~-v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++++++...+ .+|++|++....|+++. ..++..|.+ ++.+|.+.++.+. .+++
T Consensus 106 ~al~~~~~~~--~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~----------------~~l~----- 159 (400)
T 3asa_A 106 VDLFRLLSFF--GPNQTVAIQDPSYPAYL---DIARLTGAKEIIALPCLQENAFF----------------PEFP----- 159 (400)
T ss_dssp HHHHHHHHHH--CSSCEEEEEESCCHHHH---HHHHHTTCSEEEEEECCGGGTTC----------------CCCC-----
T ss_pred HHHHHHHHHc--CCCCEEEECCCCcHHHH---HHHHHcCCcceEecccchhcCcc----------------cChh-----
Confidence 9999977654 57899998886666554 445557888 9999987543331 0122
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc-C---CCCCCCCCCC----
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-C---VTQPPDLSKY---- 264 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~---g~~~~d~~~~---- 264 (508)
. .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+ + +..+.++..+
T Consensus 160 ---~--~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 160 ---E--DTHIDILCLCSPNNPTGTVLNKDQLRAIVH---------YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp ---T--TCCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred ---h--ccCccEEEEeCCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 1 146799999999999999999776655554 3444999999999998 3 2233444333
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhH-------hhhccccccCceEEecccchhhhhhccCccccccCCCCChhH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAA-------KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLS 335 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~-------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 335 (508)
+.++++.|++|++| ++| +|+++++++.. +.+... ......++.+...
T Consensus 226 ~~~i~~~s~sK~~g-~~GlriG~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 281 (400)
T 3asa_A 226 FCAIEINSFSKPLG-FAGIRLGWTVIPQELTYADGHFVIQDWER-----------------------FLSTTFNGASIPA 281 (400)
T ss_dssp GTEEEEEECCGGGT-TTTCCCEEEECCTTCBCTTSCBHHHHHHH-----------------------HHHHHCCCCCHHH
T ss_pred CceEEEecchhhcC-CcchheeEEeeChhhccchhhhHHHHHHH-----------------------HhccCccCCChHH
Confidence 24588999999998 567 79999988762 222110 0111124556666
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE-eeC-CCCCccC
Q 010538 336 IASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN-LKR-PDGSWFG 413 (508)
Q Consensus 336 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~-~~~~~~~ 413 (508)
..++.++++. ..+++++++++++++++.+.|+++ ++++..+.. +++++++ ++. .+...
T Consensus 282 ~~a~~~~l~~---~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~~~~~~~-- 341 (400)
T 3asa_A 282 QEAGVAGLSI---LPQLEAIHYYRENSDLLRKALLAT-------GFEVFGGEH--------APYLWVKPTQANISDRD-- 341 (400)
T ss_dssp HHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHT-------TCEEEECSS--------SSEEEEECCCTTCCTTT--
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHC-------CCeeeCCCC--------ceEEEEeccCCCCCHHH--
Confidence 6666656653 257888999999999999999886 577765533 6889998 763 22222
Q ss_pred HHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 414 YREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 414 ~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
+.+.| +++||.+++|..|... .++++|||+ ++|.+++++++
T Consensus 342 ---~~~~l~~~~gv~v~~g~~f~~~---------------------------------~~~~iRis~--~~~~e~i~~~l 383 (400)
T 3asa_A 342 ---LFDFFLREYHIAITPGIGFGRS---------------------------------GSGFVRFSS--LGKREDILAAC 383 (400)
T ss_dssp ---HHHHHHHHHSEECEEGGGGCGG---------------------------------GTTCEEEEC--CSCHHHHHHHH
T ss_pred ---HHHHHHHhCCEEEeChhHhCCC---------------------------------CCCEEEEEe--eCCHHHHHHHH
Confidence 55555 5679999998766432 157899994 68999999999
Q ss_pred Hhhhhhhh
Q 010538 493 CSSFDFVN 500 (508)
Q Consensus 493 ~~~~~~~~ 500 (508)
+.|+++++
T Consensus 384 ~~l~~~~~ 391 (400)
T 3asa_A 384 ERLQMAPA 391 (400)
T ss_dssp HHHHC---
T ss_pred HHHHHHHH
Confidence 99988764
No 93
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.96 E-value=5e-27 Score=242.00 Aligned_cols=352 Identities=8% Similarity=0.013 Sum_probs=230.5
Q ss_pred chHHHHHHhhccCCCCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhH-HHHHHHHHHHHHcC--CC
Q 010538 25 SIDQIRATEFKRLENGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCD-IVRAAREQVLDYFN--AS 100 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~la~~~~--~~ 100 (508)
.|+...+ .|. . +++++|+.+... .+++.+.+++.+.+ .. ....|... ..+ +.+++.+.+.+.+| ++
T Consensus 17 ~~d~~~~-~~~-~-~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~ 86 (390)
T 1d2f_A 17 QWDYVAD-RFG-T-ADLLPFTISDMDFATAPCIIEALNQRL-MH----GVFGYSRW--KNDEFLAAIAHWFSTQHYTAID 86 (390)
T ss_dssp ----------------CEECCSSSCSSCCCHHHHHHHHHHH-TT----CCCCCCCS--CCHHHHHHHHHHHHHHSCCCCC
T ss_pred chhhhcc-ccC-C-CCeeEeeecCCCCCCCHHHHHHHHHHH-hC----CCCCCCCC--ChHHHHHHHHHHHHHhcCCCCC
Confidence 3444333 454 2 578888877653 35677777765543 21 11122211 223 33334444444456 66
Q ss_pred CCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Ccccccccccccccc
Q 010538 101 MKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKI 179 (508)
Q Consensus 101 ~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~ 179 (508)
++ +|++|+|+++|+++++.++ .++|++|++....|+++. ..++..|.+++.+|.+..+ ..
T Consensus 87 ~~--~v~~t~g~~~al~~~~~~l-~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~------------- 147 (390)
T 1d2f_A 87 SQ--TVVYGPSVIYMVSELIRQW-SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGW------------- 147 (390)
T ss_dssp GG--GEEEESCHHHHHHHHHHHS-SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSE-------------
T ss_pred HH--HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCcc-------------
Confidence 66 8999999999999999998 578899998876666554 4455679999999986432 11
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV- 255 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g- 255 (508)
..|+++++ ++++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+..
T Consensus 148 ~~d~~~l~--~~l~-----~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~------------~~~~li~De~~~~~~ 208 (390)
T 1d2f_A 148 FCDMGKLE--AVLA-----KPECKIMLLCSPQNPTGKVWTCDELEIMADLCER------------HGVRVISDEIHMDMV 208 (390)
T ss_dssp ECCHHHHH--HHHT-----STTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHH------------TTCEEEEECTTTTCB
T ss_pred ccCHHHHH--HHhc-----cCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHH------------cCCEEEEEccccccc
Confidence 11678887 5552 236899999999999999999 4555666665 99999999999863
Q ss_pred ---CCCCCCCCCCC---cEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 256 ---TQPPDLSKYPV---DFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 256 ---~~~~d~~~~~~---D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
..+.++..++. |. +.|+||++| ++| +|+++++ +++.+.+.+...+ ..
T Consensus 209 ~~g~~~~~~~~~~~~~~d~-~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~----------------------~~ 264 (390)
T 1d2f_A 209 WGEQPHIPWSNVARGDWAL-LTSGSKSFN-IPALTGAYGIIENSSSRDAYLSALKG----------------------RD 264 (390)
T ss_dssp CSSSCCCCGGGTCCSSEEE-EECSHHHHT-CGGGCCEEEEECSHHHHHHHHHHHHT----------------------TS
T ss_pred cCCCCCcCHHHcchhhHhh-ccCccHhhc-ccChhheEEEECCHHHHHHHHHHHhh----------------------hc
Confidence 33344433322 67 999999998 557 6999996 5666555433110 11
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
..++++...++++.++++...+ .++++++++.++++++.+.|++ + ++++++.+.. +.++++.++
T Consensus 265 ~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~~ 329 (390)
T 1d2f_A 265 GLSSPSVLALTAHIAAYQQGAP-WLDALRIYLKDNLTYIADKMNAAF------PELNWQIPQS--------TYLAWLDLR 329 (390)
T ss_dssp CCCSCCHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHC------SSCCCCCCSB--------CSEEEEECG
T ss_pred ccCCCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHhhC------CCCEEecCCc--------cEEEEEEcc
Confidence 2245677777777677764222 3678889999999999999987 5 3566554432 456678886
Q ss_pred CCCCCccCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 406 RPDGSWFGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
+.. ++..++.+.|. ++||.+++|..|... .++++|||++. +
T Consensus 330 ~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~ 371 (390)
T 1d2f_A 330 PLN---IDDNALQKALIEQEKVAIMPGYTYGEE---------------------------------GRGFVRLNAGC--P 371 (390)
T ss_dssp GGC---CCHHHHHHHHHHTTCEECEEGGGGCGG---------------------------------GTTEEEEECCS--C
T ss_pred ccC---CCHHHHHHHHHHHcCEEeeCccccCCC---------------------------------CCCeEEEEecC--C
Confidence 421 23345777787 689999998766421 25789999997 5
Q ss_pred HHHHHHHHHhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~ 501 (508)
.++++.+++.+++.++.
T Consensus 372 ~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 372 RSKLEKGVAGLINAIRA 388 (390)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999999998887653
No 94
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=254.17 Aligned_cols=362 Identities=11% Similarity=-0.033 Sum_probs=250.6
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCC--------ceEEEcCC
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKD--------YKCIFTSG 111 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~--------~~i~~t~g 111 (508)
..-|+++-.++..++..+.+++...+. +....+..+.....+.+++.+++++++|.+.+. -..+||+|
T Consensus 78 ~p~~~~~~~~~~~~~~~~~~~~~~~~n----~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~g 153 (481)
T 4e1o_A 78 SPHMHAYYPALTSWPSLLGDMLADAIN----CLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQST 153 (481)
T ss_dssp STTBCSSSCCCCCHHHHHHHHHHHHHC----CCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESC
T ss_pred CCCeeEeCCCCCCHHHHHHHHHHHHhC----cccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCc
Confidence 455777776655566666555544432 222334455667788888999999999997531 05799999
Q ss_pred hHHHHHHHHhhcCC------------------CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccc
Q 010538 112 ATAALKLVGEAFPW------------------SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 112 ~t~al~~~~~~l~~------------------~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~ 173 (508)
+|+|+.+++.+... .++.+|+++...|+++.....+ .|.+++.||.++++.+
T Consensus 154 gt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~---~g~~~~~v~~~~~~~~------- 223 (481)
T 4e1o_A 154 VSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLI---SLVKMKFLPVDDNFSL------- 223 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHH---HTCEEEEECCCTTSCC-------
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHh---CCCceEEEEcCCCCcC-------
Confidence 99999877765421 1467899999999998777654 4899999999877766
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ ++|++.......+.+|++++++|++|.+.|+++|.++|++ +|++++||++++
T Consensus 224 --------d~~~Le--~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~------------~~~~lhvDaA~g 281 (481)
T 4e1o_A 224 --------RGEALQ--KAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAR------------EGLWLHIDAAYA 281 (481)
T ss_dssp --------CHHHHH--HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH------------HTCEEEEECTTG
T ss_pred --------CHHHHH--HHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHH------------cCCeEEeehhhH
Confidence 688888 6664321112237889999999999999999999999998 999999999998
Q ss_pred CCCCCCC-CC--CC---CCcEEEEeccccccCCCcceEEEEechhH-hh-h--ccccccCceEEecccchhhhhhccCcc
Q 010538 254 CVTQPPD-LS--KY---PVDFVVMSFYKIFGYPTGLGALIMRNDAA-KL-L--KNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 254 ~g~~~~d-~~--~~---~~D~~~~S~~K~~g~P~G~G~l~~~~~~~-~~-l--~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
.+....+ .. .. .+|++++++|||++.|.|+|+++++++.. .. + .+.+...... ....++ ..
T Consensus 282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~---~~~~~~------~~ 352 (481)
T 4e1o_A 282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS---GVATDF------MH 352 (481)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT---TTSCCG------GG
T ss_pred HHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc---CCCCCc------cc
Confidence 7643221 11 11 35999999999988899999999987653 11 1 1111111000 000000 01
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
.....+.+ .....+++++..+...|++++.++..++++++.+.|+++ ++++++.++. .++++|+
T Consensus 353 ~~~~~~r~--~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~--------~~~v~f~ 416 (481)
T 4e1o_A 353 WQIPLSRR--FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND------PSFEIPAKRH--------LGLVVFR 416 (481)
T ss_dssp GSSSSCCC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTEECCSCCC--------SSEEEEE
T ss_pred ccccCCCC--ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc--------eeEEEEE
Confidence 11222222 235667778887777789999999999999999999988 4799886653 7899999
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCee-ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQL-RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v-~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
+++.+. ...++.+.|.++|+.+ .++. . .....+|+++..+
T Consensus 417 ~~~~~~---~~~~l~~~L~~~g~~~~~~~~----~--------------------------------~g~~~lR~~~~~~ 457 (481)
T 4e1o_A 417 LKGPNS---LTENVLKEIAKAGRLFLIPAT----I--------------------------------QDKLIIRFTVTSQ 457 (481)
T ss_dssp ESSCHH---HHHHHHHHHHHHCSSBCEEEE----E--------------------------------TTEEEEEEECCCT
T ss_pred eCCchH---HHHHHHHHHHhCCeEEEEeeE----E--------------------------------CCEEEEEEEeCCC
Confidence 865321 1245777887777543 3211 0 0146899998755
Q ss_pred -CCHHHHHHHHHhhhhhhhh
Q 010538 483 -STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 -~t~eev~~l~~~~~~~~~~ 501 (508)
+|.+||++++++|+++.+.
T Consensus 458 ~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 458 FTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999988764
No 95
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=3e-27 Score=246.73 Aligned_cols=341 Identities=10% Similarity=0.025 Sum_probs=239.1
Q ss_pred CCCeeeeCCCC-CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGA-TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~a 115 (508)
++++.|..+.. .+++|.+++++.+......+ .|... ..++.+++.+++++.++ ++++ +|+||+|+++|
T Consensus 61 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~~--~~~l~~~l~~~l~~~~g~~~~~~--~v~~~~g~~ea 131 (421)
T 3l8a_A 61 PELLQMWVADMDFLPVPEIKEAIINYGREHIF-----GYNYF--NDDLYQAVIDWERKEHDYAVVKE--DILFIDGVVPA 131 (421)
T ss_dssp TTCEECCSSCCCSCCCHHHHHHHHHHHHHCCS-----SCBCC--CHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHH
T ss_pred CCeeecccCCCCCCCCHHHHHHHHHHHhcCCc-----CCCCC--CHHHHHHHHHHHHHHhCCCCCHH--HEEEcCCHHHH
Confidence 45666654442 23467787777654432111 11111 25667888899999988 5666 89999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-CccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-EAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+++++.++ .++|++|++....|+++.. .++..|.+++.+|++ .++.. ..|+++++ +++.
T Consensus 132 ~~~a~~~~-~~~gd~Vi~~~~~y~~~~~---~~~~~g~~~~~~~~~~~~~~~-------------~~d~~~le--~~i~- 191 (421)
T 3l8a_A 132 ISIALQAF-SEKGDAVLINSPVYYPFAR---TIRLNDHRLVENSLQIINGRF-------------EIDFEQLE--KDII- 191 (421)
T ss_dssp HHHHHHHH-SCTEEEEEEEESCCHHHHH---HHHHTTEEEEEEECEEETTEE-------------ECCHHHHH--HHHH-
T ss_pred HHHHHHHh-cCCCCEEEECCCCcHHHHH---HHHHCCCEEEeccccccCCCe-------------eeCHHHHH--HHhh-
Confidence 99999998 6788999988876665544 445569999999986 23211 11678888 4442
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC-----CC
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK-----YP 265 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~-----~~ 265 (508)
.+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. |....++.. .+
T Consensus 192 ----~~~~~~vil~~p~nptG~~~~~~~l~~l~~---------l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 258 (421)
T 3l8a_A 192 ----DNNVKIYLLCSPHNPGGRVWDNDDLIKIAE---------LCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKD 258 (421)
T ss_dssp ----HTTEEEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGG
T ss_pred ----ccCCeEEEECCCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEccccccccCCCCCccHHHcCchhcC
Confidence 157899999999999999976655555544 34459999999999975 322333322 24
Q ss_pred CcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
.++++.|++|++| ++| +|+++++ +++.+.+.+.. .....+++|..+++++.++
T Consensus 259 ~~i~~~s~sK~~g-~~G~~~G~~~~~~~~l~~~~~~~~-----------------------~~~~~~~~n~~~~~a~~aa 314 (421)
T 3l8a_A 259 FTIILSSATKTFN-IAGTKNSFAIIQNESLRRKFQYRQ-----------------------LANNQHEVPTVGMIATQAA 314 (421)
T ss_dssp TEEEEECSHHHHT-CGGGCCEEEECCSHHHHHHHHHHH-----------------------HHTTCSCCCHHHHHHHHHH
T ss_pred cEEEEEeChhhcc-CchhheEeEEcCCHHHHHHHHHHH-----------------------HhcccCCCCHHHHHHHHHH
Confidence 5589999999998 546 6999998 67766554431 1122346777778888778
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC--CCCCccCHHHHHHH
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR--PDGSWFGYREVEKL 420 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~ 420 (508)
++...+ .++++.+++.++++++.+.|+++ ++++++.+.. ..++++.++. .+.. ++.+.
T Consensus 315 l~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------~~i~~~~~~~--------~~~~~v~~~~~~~~~~-----~l~~~ 374 (421)
T 3l8a_A 315 FQYGKP-WLEELKTVIEGNIKLVIKELEAK------TKIKVMEPEG--------TYLVWLDFSAYAIAQP-----QLSEK 374 (421)
T ss_dssp HHHCHH-HHHHHHHHHHHHHHHHHHHHHHH------CSCEEECCSB--------SSEEEEECGGGTCCTT-----HHHHH
T ss_pred HhccHH-HHHHHHHHHHHHHHHHHHHHHhC------CCceEeCCCe--------eEEEEEeccccCCCHH-----HHHHH
Confidence 775332 36888999999999999999886 3688876643 4566688764 2332 46777
Q ss_pred Hh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 421 AS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 421 L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
|. ++||.+++|..|... .++++||+++ ++.++++++++.|++.+
T Consensus 375 l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 375 LQNEAKVVLNDGAHFGKE---------------------------------GKYFARLNVA--TPKNTVQEALSRIISVF 419 (421)
T ss_dssp HHHTTCEECEEGGGGCGG---------------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEECchhhCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 74 679999998766432 2689999999 69999999999998765
Q ss_pred h
Q 010538 500 N 500 (508)
Q Consensus 500 ~ 500 (508)
+
T Consensus 420 ~ 420 (421)
T 3l8a_A 420 G 420 (421)
T ss_dssp -
T ss_pred h
Confidence 3
No 96
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.95 E-value=2.4e-27 Score=246.15 Aligned_cols=335 Identities=11% Similarity=0.041 Sum_probs=231.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhcc-ccCCCCCccchhhhhhHHHHHHHHHHHHHc----CCC--C-CCceEEEc
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTN-VYGNPHSQSDISLATCDIVRAAREQVLDYF----NAS--M-KDYKCIFT 109 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~-~~~~i~~t 109 (508)
++.+.|+.+.... +++.+.+++.+.+... ... |... ....++++.+++++ |++ + + +|++|
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~-----y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~--~v~~t 115 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQK-----YGAF----HGKEAFKQAIVDFYQRQYNVTLDKED--EVCIL 115 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHS-----CCCT----TCCHHHHHHHHHHHHHHHCCCCCTTT--SEEEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCC-----CCCC----CCCHHHHHHHHHHHHHHhCCCCCCcc--cEEEc
Confidence 3578888776543 4677777665433111 111 1110 11345566666666 875 3 5 79999
Q ss_pred CChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Cccccccccccccccccchhhhhc
Q 010538 110 SGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 110 ~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
+|+++|+.+++.++ .++|++|++....|+++... ++..|.+++.+|.+.++ .+ |+++++
T Consensus 116 ~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~---------------d~~~l~- 175 (404)
T 2o1b_A 116 YGTKNGLVAVPTCV-INPGDYVLLPDPGYTDYLAG---VLLADGKPVPLNLEPPHYLP---------------DWSKVD- 175 (404)
T ss_dssp SSHHHHHHHHHHHH-CCTTCEEEEEESCCSSHHHH---HHHTTCEEEEEECCTTTCCC---------------CGGGSC-
T ss_pred CCcHHHHHHHHHHh-cCCCCEEEEcCCCchhHHHH---HHHCCCEEEEeccCcccCcC---------------CHHHHH-
Confidence 99999999999998 67889999998888776654 44569999999987522 12 456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCCC-
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSKY- 264 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~~- 264 (508)
+++ .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+... .+.++...
T Consensus 176 -~~l------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 239 (404)
T 2o1b_A 176 -SQI------IDKTKLIYLTYPNNPTGSTATKEVFDEAIA---------KFKGTDTKIVHDFAYGAFGFDAKNPSILASE 239 (404)
T ss_dssp -HHH------HHHEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHTTSSCEEEEECTTTTCBSSSCCCCGGGST
T ss_pred -Hhh------ccCceEEEEcCCCCCCCccCCHHHHHHHHH---------HHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence 333 356899999999999999998665555544 3445999999999998643 23344332
Q ss_pred ---CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 265 ---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 265 ---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+.++++.|+||++| ++| +|++++++++++.+.+... ...++.+....+++
T Consensus 240 ~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~ 294 (404)
T 2o1b_A 240 NGKDVAIEIYSLSKGYN-MSGFRVGFAVGNKDMIQALKKYQT------------------------HTNAGMFGALQDAA 294 (404)
T ss_dssp THHHHEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHHH------------------------HHCCCCCHHHHHHH
T ss_pred CCCCCEEEEEecchhcc-CchhheEeEecCHHHHHHHHHHHh------------------------hccCCCCHHHHHHH
Confidence 46799999999998 446 7999999888776654311 11234556666666
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEK 419 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 419 (508)
.++++.. +..++++++++.++++++.+.|+++ ++++..+.. +.+++++++.. ++..++.+
T Consensus 295 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~----~~~~~l~~ 354 (404)
T 2o1b_A 295 IYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKA-------DLPFVHAKG--------GIYVWLETPPG----YDSEQFEQ 354 (404)
T ss_dssp HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCCB--------SSEEEEECCTT----CCHHHHHH
T ss_pred HHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhc-------CCeecCCCc--------ceEEEEeCCCC----CCHHHHHH
Confidence 6666642 2346788889999999999999886 466654432 55688888632 23445666
Q ss_pred HHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 420 LAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 420 ~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.|. ++||.+++|..|... ..+++|||++. +.++++.+++.|+++
T Consensus 355 ~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 355 FLVQEKSILVAPGKPFGEN---------------------------------GNRYVRISLAL--DDQKLDEAAIRLTEL 399 (404)
T ss_dssp HHHHHHCEECEESGGGCGG---------------------------------GTTEEEEECCS--CTTHHHHHHHHHHGG
T ss_pred HHHHHCCEEEeCchhhCcC---------------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 654 689999998765431 15789999996 788999999998887
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 400 l~ 401 (404)
T 2o1b_A 400 AY 401 (404)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 97
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.95 E-value=3.5e-27 Score=241.53 Aligned_cols=332 Identities=11% Similarity=0.043 Sum_probs=232.9
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~t~g 111 (508)
++++.|..+... ++++.+.+++.+.+..... .|.. .. .++++.++++++ ++++ +|++|+|
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~-~~-----~~lr~~la~~~~~~~~~~~~~~--~i~~t~g 89 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQREAF-----GYQP-DG-----SLLSQATAEFYADRYGYQARPE--WIFPIPD 89 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTTCC-----SSCC-SS-----CCHHHHHHHHHHHHHCCCCCGG--GEEEESC
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcCCC-----CCCC-CC-----HHHHHHHHHHHHHHhCCCCCHH--HEEEeCC
Confidence 678888877643 3467777776554432111 1111 11 334566666655 6677 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+|+|+++++.++ .++|++|++....|+++... ++..|.+++.+|.+.+ + |+++++ ++
T Consensus 90 ~~~a~~~~~~~~-~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~--~---------------d~~~l~--~~ 146 (377)
T 3fdb_A 90 VVRGLYIAIDHF-TPAQSKVIVPTPAYPPFFHL---LSATQREGIFIDATGG--I---------------NLHDVE--KG 146 (377)
T ss_dssp HHHHHHHHHHHH-SCTTCCEEEEESCCTHHHHH---HHHHTCCEEEEECTTS--C---------------CHHHHH--HH
T ss_pred hHHHHHHHHHHh-cCCCCEEEEcCCCcHhHHHH---HHHcCCEEEEccCCCC--C---------------CHHHHH--HH
Confidence 999999999998 67889999888777766544 4456999999998765 4 678887 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----C-CCCCCCCC---
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----V-TQPPDLSK--- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g-~~~~d~~~--- 263 (508)
+ .++++++++++++||||.++|.+++.++++ +|+++|+++|+|++|+. | ..+.++..
T Consensus 147 l------~~~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 211 (377)
T 3fdb_A 147 F------QAGARSILLCNPYNPLGMVFAPEWLNELCD---------LAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA 211 (377)
T ss_dssp H------HTTCCEEEEESSBTTTTBCCCHHHHHHHHH---------HHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH
T ss_pred h------ccCCCEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHcCCEEEEEcccchhhcCCCCCcccHHHccC
Confidence 4 345789999999999999999877777755 44459999999999986 2 23334432
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIR 340 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~ 340 (508)
.+.++++.|+||++| ++| +|++++ ++++++.+.... ....++++....+++.
T Consensus 212 ~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~ 266 (377)
T 3fdb_A 212 ASVCITITAPSKAWN-IAGLKCAQIIFSNPSDAEHWQQLS------------------------PVIKDGASTLGLIAAE 266 (377)
T ss_dssp HHHEEEEECSTTTTT-CGGGCCEEEECCSHHHHHHHHHSC------------------------HHHHCCCCHHHHHHHH
T ss_pred CCcEEEEEeChHhcc-CcchhheEEEeCCHHHHHHHHHHH------------------------HhhcCCCCHHHHHHHH
Confidence 234589999999997 446 798887 566665554321 1112456666666666
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC-CCCccCHHHHH
Q 010538 341 HGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP-DGSWFGYREVE 418 (508)
Q Consensus 341 ~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~ 418 (508)
++++... ..++++.+++.++++++.+.|++ + ++++++.+.. +.++++.++.. ...+ .+.
T Consensus 267 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~--------~~~~~~~~~~~~~~~~----~~~ 327 (377)
T 3fdb_A 267 AAYRYGT-DFLNQEVAYLKNNHDFLLHEIPKRI------PGAKITPMQA--------TYLMWIDFRDTTIEGS----PSE 327 (377)
T ss_dssp HHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHS------TTCEECCCSB--------CSEEEEECTTSCCCSC----HHH
T ss_pred HHHhccH-HHHHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCe--------eEEEEEECcccCCCHH----HHH
Confidence 6666432 23688899999999999999988 5 4688876543 56667888653 1222 134
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.+++++||.+++|..|... .++++|+|++. +.++++++++.|+++
T Consensus 328 ~l~~~~gi~v~~g~~~~~~---------------------------------~~~~~Ris~~~--~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 328 FFIEKAKVAMNDGAWFGED---------------------------------GTGFCRLNFAT--SREVLEEAIDRMAKA 372 (377)
T ss_dssp HHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEecCChhccCC---------------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 4455569999998776543 16899999994 899999999999887
Q ss_pred hh
Q 010538 499 VN 500 (508)
Q Consensus 499 ~~ 500 (508)
++
T Consensus 373 l~ 374 (377)
T 3fdb_A 373 VS 374 (377)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 98
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.95 E-value=2e-27 Score=248.59 Aligned_cols=335 Identities=14% Similarity=0.073 Sum_probs=228.1
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCC--CccchhhhhhHHHHHHHHHHHHHc----CCCCCCceEEEcCC
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPH--SQSDISLATCDIVRAAREQVLDYF----NASMKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~~i~~t~g 111 (508)
++.|+|..+... ++++.+++++.+... . +.+.. ..|.. .....++++.+++++ +++++ +|++|+|
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~-~~~~~~~~~y~~----~~g~~~l~~~ia~~~~~~~~~~~~--~i~~t~G 127 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAH-E-LSTIEGYSGYGA----EQGAKPLRAAIAKTFYGGLGIGDD--DVFVSDG 127 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHH-H-TTSTTTCCCCCC----TTCCHHHHHHHHHHHHTTTTCCGG--GEEEESC
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHh-c-ccccCCccCCCC----CCCCHHHHHHHHHHHHccCCCCcc--eEEECCC
Confidence 478999988655 457778777765442 2 22211 12221 112355667777765 78887 8999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcC---------CeEEEEccCCccCccccccccccccccccc
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQG---------AAAFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G---------~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
+++++.++ .++ .++|+.|+++...|+++....+.+...| .+++.+|.+....+.
T Consensus 128 ~~~al~~l-~~l-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 190 (432)
T 3ei9_A 128 AKCDISRL-QVM-FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFF--------------- 190 (432)
T ss_dssp HHHHHHHH-HHH-HCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTS---------------
T ss_pred hHHHHHHH-HHH-cCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCc---------------
Confidence 99999985 555 4789999999999998887776664333 367788876533321
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQPP 259 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~~ 259 (508)
.+++ . .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. +..+.
T Consensus 191 -~~l~--------~--~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~---------la~~~~~~li~Dea~~~~~~~~~~~ 250 (432)
T 3ei9_A 191 -PDLS--------T--VGRTDIIFFCSPNNPTGAAATREQLTQLVE---------FAKKNGSIIVYDSAYAMYMSDDNPR 250 (432)
T ss_dssp -CCGG--------G--CCCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTGGGCCSSCCS
T ss_pred -CChh--------h--CCCCCEEEEeCCCCCCCCCCCHHHHHHHHH---------HHHHcCcEEEEccchHhhccCCCCC
Confidence 1123 1 256799999999999999999887777755 45559999999999984 32233
Q ss_pred CCCC----CCCcEEEEeccccccCCCc--ceEEEEechh--------HhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 260 DLSK----YPVDFVVMSFYKIFGYPTG--LGALIMRNDA--------AKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 260 d~~~----~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~--------~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
.+.. .+.++++.|++|+|| ++| +|+++++++. .+.+... ..
T Consensus 251 ~~~~~~~~~~~~i~~~S~SK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 305 (432)
T 3ei9_A 251 SIFEIPGAEEVAMETASFSNYAG-FTGVRLGWTVIPKKLLYSDGFPVAKDFNRI------------------------IC 305 (432)
T ss_dssp SGGGSTTGGGTEEEEEESHHHHC-TTTTCCEEEECCTTCBCTTSCBHHHHHHHH------------------------HH
T ss_pred ChhhcCCCCCeEEEEecchhccC-CcccceEEEEEChHHhhcchHHHHHHHHHH------------------------hc
Confidence 3322 245799999999998 667 7999998876 2222211 11
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
...++++...+.+..+++.......++++.+++.++++++.+.|+++ ++++..+.. ++++++.++
T Consensus 306 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~ 370 (432)
T 3ei9_A 306 TCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-------GYDVYGGKN--------APYVWVHFP 370 (432)
T ss_dssp HSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEEECSS--------SSEEEEECT
T ss_pred cccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-------CceecCCCc--------ceEEEEECC
Confidence 11234555555555555532111236788899999999999999886 566665543 688999987
Q ss_pred CCCCCccCHHHHHHH-HhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 406 RPDGSWFGYREVEKL-ASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~-L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
+. +..++.+. ++++||.+++|..|.+. ..+++|||+ .++
T Consensus 371 ~~-----~~~~~~~~ll~~~gv~v~~g~~f~~~---------------------------------~~~~iRis~--~~~ 410 (432)
T 3ei9_A 371 NQ-----SSWDVFAEILEKTHVVTTPGSGFGPG---------------------------------GEGFVRVSA--FGH 410 (432)
T ss_dssp TS-----CHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEEC--CSC
T ss_pred CC-----CHHHHHHHHHHHCCEEEeCchHhCCC---------------------------------CCCEEEEEe--cCC
Confidence 43 23345555 45679999998766532 268999997 469
Q ss_pred HHHHHHHHHhhhhh
Q 010538 485 FEDAKVNRCSSFDF 498 (508)
Q Consensus 485 ~eev~~l~~~~~~~ 498 (508)
.++++++++.|++-
T Consensus 411 ~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 411 RENILEACRRFKQL 424 (432)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 99
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.95 E-value=2.3e-27 Score=239.01 Aligned_cols=312 Identities=13% Similarity=0.027 Sum_probs=210.2
Q ss_pred HHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCccCc
Q 010538 88 AAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAVDN 166 (508)
Q Consensus 88 ~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~ 166 (508)
++++.+|+++|++ + .+++++| ++|+++++.++ .++|++|+++...|+++...... ++..|++++.+|..
T Consensus 2 ~l~~~la~~~g~~-~--~i~~~sG-~~a~~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----- 71 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A--CAATASG-MGAIAASVWTF-LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----- 71 (331)
T ss_dssp HHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----
T ss_pred hHHHHHHHHhCCC-e--EEEeCCh-HHHHHHHHHHh-cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCC-----
Confidence 5688999999987 4 5666666 89999999988 67889999999999987665443 56679999998762
Q ss_pred cccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 167 DGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 167 ~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
|+++++ +++ ++++++|++++++||||.+.|+++|.++|++ .+|+++
T Consensus 72 ---------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~-----------~~~~~l 117 (331)
T 1pff_A 72 ---------------VPGNIE--KHL------KPNTRIVYFETPANPTLKVIDIEDAVKQARK-----------QKDILV 117 (331)
T ss_dssp ---------------STTHHH--HTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTT-----------SSSCEE
T ss_pred ---------------CHHHHH--Hhh------cCCCeEEEEECCCCCcCcccCHHHHHHHHhh-----------hcCCEE
Confidence 355667 444 4678999999999999999999999999984 069999
Q ss_pred EEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 247 LIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 247 ivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|++|+.|....++ +.++|++++|+||++++|.+ .|++++++ ++++.+.+...++
T Consensus 118 i~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-------------------- 176 (331)
T 1pff_A 118 IVDNTFASPILTNPL-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-------------------- 176 (331)
T ss_dssp EEECTTTHHHHCCGG-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC--------------------
T ss_pred EEECCCcccccCChh-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh--------------------
Confidence 999999887654444 46799999999999987876 79999998 8877776653320
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH--HhcccC--CCCCceEEEecCCCCCcccCCCCce
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKV--LLSLRH--ENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~--L~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
..++.+....+++..+++.+... .+...+....+.+++.+. +.+... ....++++++.+.. ...+++
T Consensus 177 ---~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~-----~~~~~~ 247 (331)
T 1pff_A 177 ---TGAIISPHDAWLITRGTLTLDMR-VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM-----KMFGSM 247 (331)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC-----SSCCSE
T ss_pred ---cCCCCCHHHHHHHHcCcchHHHH-HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-----CCCceE
Confidence 11234444444444555543221 233333333444433322 000000 00112333333221 123789
Q ss_pred EEEEeeCCCCCccCHHHHHHHHhhCCCeeccC---------CCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 400 VSFNLKRPDGSWFGYREVEKLASLSGIQLRTG---------CFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 400 v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
++|.+++ ..++.+.|.++||.++.. .+|+.+.. ...+++.+.++|.
T Consensus 248 ~~~~~~~-------~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~----~~~~~~~~~~~g~-------------- 302 (331)
T 1pff_A 248 IAFDVDG-------LEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTH----AGVPKEEREAAGL-------------- 302 (331)
T ss_dssp EEEECSS-------HHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTS----TTSCHHHHHHTTC--------------
T ss_pred EEEEECC-------HHHHHHHHHhCCCceeccCCCCcceeeecchhhcc----cccCHHHHHhcCC--------------
Confidence 9998852 235888999999987654 24433211 0012333444443
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.++.+|+|++.++|++++++++++++++
T Consensus 303 ~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 303 TDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp CTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 2689999999999999999999998764
No 100
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=3.5e-28 Score=251.59 Aligned_cols=363 Identities=15% Similarity=0.025 Sum_probs=245.8
Q ss_pred hHHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhcc-ccCCCCCccchhhhhhHHHH-HHHHHHHHHcCCCCCC
Q 010538 26 IDQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSDISLATCDIVR-AAREQVLDYFNASMKD 103 (508)
Q Consensus 26 ~~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~r~~la~~~~~~~~~ 103 (508)
++.+++ ++... ++++.|..+. ++.++.+.+++.+.+... ...+|...+..+.......+ .+++++++++|++++
T Consensus 12 ~~~~~~-~~~~~-~~~i~~~~~~-~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~- 87 (407)
T 2dkj_A 12 FELIAL-EEKRQ-REGLELIASE-NFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA- 87 (407)
T ss_dssp HHHHHH-HHHHH-HTSEECCTTC-CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-
T ss_pred HHHHHH-HHHHh-hcceeeccCC-CCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc-
Confidence 455555 65544 5666665554 445888888875543221 12233332222222222334 477899999999865
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCC--eEEEEccCC-ccCccccccccccccccc
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGA--AAFAIDVEE-AVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~--~v~~v~~~~-~~~~~~l~~~~~~~~~~~ 180 (508)
.|++++| |+|+.+++.++ .++|++|+++...|+++......++..|. .+..++.+. ...+
T Consensus 88 -~i~~~sG-t~a~~~~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------- 150 (407)
T 2dkj_A 88 -NVQPHSG-SQANMAVYMAL-MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELI-------------- 150 (407)
T ss_dssp -ECCCSSH-HHHHHHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSC--------------
T ss_pred -eEEecch-HHHHHHHHHHh-cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCcc--------------
Confidence 4555555 56999999998 68899999999999887421111122244 344443332 2333
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD 260 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d 260 (508)
|+++++ +++. .+++++|++++++|+ ...|+++|.++|++ +|+++|+|++|+.|..+.+
T Consensus 151 -d~~~l~--~~l~-----~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~ 208 (407)
T 2dkj_A 151 -DLEEVR--RLAL-----EHRPKVIVAGASAYP--RFWDFKAFREIADE------------VGAYLVVDMAHFAGLVAAG 208 (407)
T ss_dssp -CHHHHH--HHHH-----HHCCSEEEECCSSCC--SCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTT
T ss_pred -CHHHHH--HHHh-----hcCCeEEEEeccccC--CCCCHHHHHHHHHH------------cCCEEEEEccccccccccC
Confidence 577887 4442 136789998777775 88999999999998 8999999999986443222
Q ss_pred CCC---CCCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHH
Q 010538 261 LSK---YPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSI 336 (508)
Q Consensus 261 ~~~---~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 336 (508)
... ...|++++|+||+++||.| |+++++ +++++.+.+.... +..++++...+
T Consensus 209 ~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~ 264 (407)
T 2dkj_A 209 LHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFP-----------------------GIQGGPLEHVI 264 (407)
T ss_dssp CSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTT-----------------------TTCSSCCHHHH
T ss_pred ccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcc-----------------------cccCCCcHHHH
Confidence 111 1379999999998877876 999999 6877666543211 22356677777
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 337 ASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 337 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+++.++++.+...+++++.+++.++++++.+.|+++ +++++.++. .++++++.++... .+...
T Consensus 265 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~---~~~~~ 327 (407)
T 2dkj_A 265 AGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR-------GYRIVTGGT-------DNHLFLVDLRPKG---LTGKE 327 (407)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSC-------SSSEEEEECGGGT---CCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC-------CceeecCCC-------CceEEEEECcccC---CCHHH
Confidence 778888887655568999999999999999999986 577776432 2789999886421 23456
Q ss_pred HHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHH
Q 010538 417 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNR 492 (508)
Q Consensus 417 l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~ 492 (508)
+.+.|.++||.+++|..+.... ....++++|+|++.+ .|.+|+++++
T Consensus 328 ~~~~l~~~gi~v~~~~~~~~~~-----------------------------~~~~~~~iRis~~~~~~~~~~~~~i~~~~ 378 (407)
T 2dkj_A 328 AEERLDAVGITVNKNAIPFDPK-----------------------------PPRVTSGIRIGTPAITTRGFTPEEMPLVA 378 (407)
T ss_dssp HHHHHHHTTEECEECCCTTCSS-----------------------------CTTTCSEEEEECHHHHHTTCCGGGHHHHH
T ss_pred HHHHHHHcCceecCCcCccccc-----------------------------cccCCCceeeecccccccCCCHHHHHHHH
Confidence 8888999999999876321100 001256899999865 7999999999
Q ss_pred Hhhhhhhhh
Q 010538 493 CSSFDFVNF 501 (508)
Q Consensus 493 ~~~~~~~~~ 501 (508)
++|+++++-
T Consensus 379 ~~l~~~~~~ 387 (407)
T 2dkj_A 379 ELIDRALLE 387 (407)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988765
No 101
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.95 E-value=3.9e-27 Score=241.66 Aligned_cols=335 Identities=12% Similarity=0.025 Sum_probs=228.4
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----CCC--CCCceEEEcCC
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----NAS--MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~~--~~~~~i~~t~g 111 (508)
++.+.|+.+.... +++.+.+++.+.+ ... ....|.. .....++++.+++++ |++ +++ +|++|+|
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~-~~~---~~~~y~~----~~~~~~l~~~ia~~~~~~~g~~~~~~~-~v~~~~g 95 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEAL-NDP---TTYGYCL----KSCTLPFLEEAARWYEGRYGVGLDPRR-EALALIG 95 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHT-TCG---GGSSCCC----HHHHHHHHHHHHHHHHHHHSCCCCTTT-SEEEESS
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHH-hCC---CcCCCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCc-cEEEcCC
Confidence 4678888776543 4677777665433 210 0111221 133566777777776 875 221 6999999
Q ss_pred hHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 112 ATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 112 ~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
+++|+.+++.++ .++|++|++....|+++. ..++..|.+++.+|.+....+ |+++++ ++
T Consensus 96 ~~~a~~~~~~~l-~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~---------------d~~~l~--~~ 154 (376)
T 2dou_A 96 SQEGLAHLLLAL-TEPEDLLLLPEVAYPSYF---GAARVASLRTFLIPLREDGLA---------------DLKAVP--EG 154 (376)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESSCCHHHH---HHHHHTTCEEEEECBCTTSSB---------------CGGGSC--HH
T ss_pred cHHHHHHHHHHh-cCCCCEEEECCCCcHhHH---HHHHHcCCEEEEeeCCCCCCC---------------CHHHHH--Hh
Confidence 999999999998 678899998886666554 445567999999998322222 456666 33
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCC----CC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLS----KY 264 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~----~~ 264 (508)
+ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+.+. .+.++. ..
T Consensus 155 l------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 219 (376)
T 2dou_A 155 V------WREAKVLLLNYPNNPTGAVADWGYFEEALG---------LARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAK 219 (376)
T ss_dssp H------HHHEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGG
T ss_pred h------ccCceEEEECCCCCCcCccCCHHHHHHHHH---------HHHHcCCEEEEEccchhcccCCCCCChhhcCCCC
Confidence 3 356899999999999999999765555544 3444999999999998632 222322 12
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+.++++.|+||++| ++| +|++++++++++.+..... ....+.+....+++.++
T Consensus 220 ~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~ 274 (376)
T 2dou_A 220 ERVVELFSLSKSYN-LAGFRLGFALGSEEALARLERVKG------------------------VIDFNQYAGVLRMGVEA 274 (376)
T ss_dssp GTEEEEEEHHHHHT-CGGGCCEEEEECHHHHHHHHHHHH------------------------HHCCCSCHHHHHHHHHH
T ss_pred CcEEEEecchhhcC-ChhheeEEEecCHHHHHHHHHHHH------------------------hcccCCCHHHHHHHHHH
Confidence 56799999999998 556 7999999888776654311 11123455555555556
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.. +..++.+++++.++++++.+.|+++ +++..+.. +.++++++++. .+..++.+.|.
T Consensus 275 l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~l~ 333 (376)
T 2dou_A 275 LKTP-KEVVRGYARVYRERALGMAEALKGV--------LSLLPPRA--------TMYLWGRLPEG----VDDLEFGLRLV 333 (376)
T ss_dssp HTSC-HHHHHHHHHHHHHHHHHHHHHHTTT--------SEECCCCB--------SSEEEEECCTT----CCHHHHHHHHH
T ss_pred HhCc-HHHHHHHHHHHHHHHHHHHHHHHHh--------cCccCCCe--------eEEEEEECCCC----CCHHHHHHHHH
Confidence 5532 2236778888999999999999763 34443322 56788888642 23456888888
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
++||.+++|..|... ..+++|+|++. +.++++++++.|++++
T Consensus 334 ~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 334 ERGVALAPGRGFGPG---------------------------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp HTTEECEEGGGGCGG---------------------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred HCCEEEcCchhhCCC---------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 889999998765421 15789999985 8999999999988764
No 102
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.95 E-value=1.3e-26 Score=235.49 Aligned_cols=316 Identities=12% Similarity=0.074 Sum_probs=225.3
Q ss_pred CCCeeeeCCCC-CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH
Q 010538 39 NGTVYLDHAGA-TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK 117 (508)
Q Consensus 39 ~~~iyld~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~ 117 (508)
++++.|..+.. .++++.+++++.+.+ .....+|... ..++|+++|++++++++ +|++|+|+|+|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~----------~~~lr~~la~~~~~~~~--~i~~t~g~~~al~ 81 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPD----------AGTLRQMLAKRNSVDNN--AILVTNGPTAAFY 81 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTT----------CHHHHHHHHHHTTCCGG--GEEEESHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCc----------HHHHHHHHHHHhCcCHH--HEEEcCCHHHHHH
Confidence 56788877643 335677777765533 3333333211 14689999999999888 8999999999999
Q ss_pred HHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CCccCccccccccccccccccchhhhhcCCCCCCCC
Q 010538 118 LVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD 196 (508)
Q Consensus 118 ~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~ 196 (508)
+++.++. |++|+++...|+++. ..++..|++++.+|. +....+ .
T Consensus 82 ~~~~~l~---gd~Vi~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~--------------------~--------- 126 (350)
T 3fkd_A 82 QIAQAFR---GSRSLIAIPSFAEYE---DACRMYEHEVCFYPSNEDIGEA--------------------D--------- 126 (350)
T ss_dssp HHHHHTT---TCEEEEEESCCHHHH---HHHHHTTCEEEEEETTSCGGGS--------------------C---------
T ss_pred HHHHHHC---CCEEEEeCCCcHHHH---HHHHHcCCeEEEEecCCccccC--------------------c---------
Confidence 9999984 899998886665544 555667999999998 543333 1
Q ss_pred CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-----CCCCCCCCcEEEE
Q 010538 197 PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-----PDLSKYPVDFVVM 271 (508)
Q Consensus 197 ~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-----~d~~~~~~D~~~~ 271 (508)
.+++++|++++++||||.++|++++.++++. |++ .++|+|++|+..... ..+...+.++++.
T Consensus 127 --~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~---------~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~ 193 (350)
T 3fkd_A 127 --FSNMDFCWLCNPNNPDGRLLQRTEILRLLND---------HPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY 193 (350)
T ss_dssp --CTTCSEEEEESSCTTTCCCCCHHHHHHHHHH---------CTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred --cCCCCEEEEeCCCCCcCCCCCHHHHHHHHHh---------CCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence 1467999999999999999999999999994 433 399999998743221 1222345669999
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|++|++| ++| +|++++++++++.+.... ...+++.....++.++++....
T Consensus 194 S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~- 245 (350)
T 3fkd_A 194 SFSHAYG-IPGLRIGYIVANKDFMKRVAAFS--------------------------TPWAVNALAIEAAKFILIHPAQ- 245 (350)
T ss_dssp ESHHHHS-CGGGCCEEEECCHHHHHHHHTTC--------------------------CTTCSCHHHHHHHHHHHHCTTT-
T ss_pred cCchhcc-CcchheEeEEeCHHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHHhCHHH-
Confidence 9999998 445 899999888877665431 1234555555555555553221
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCee
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQL 428 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~v 428 (508)
-.+.+.+.. ++++++.+.|+++ +++++..+. ++++++.++.. +..++.+.|.+ +||.+
T Consensus 246 ~~~~~~~~~-~~~~~l~~~L~~~------~~~~~~~~~---------~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v 304 (350)
T 3fkd_A 246 FTLPIRKWQ-RNTVDFITALNRL------DGVEVHPSG---------TTFFLLRLKKG-----TAAELKKYMLEEYNMLI 304 (350)
T ss_dssp TCCCHHHHH-HHHHHHHHHHHHS------TTEEECCCS---------SSEEEEEESSS-----CHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHH-HHHHHHHHHHhcC------CCcEECCCC---------CcEEEEECCCC-----CHHHHHHHHHHHCCEEE
Confidence 134444444 8899999999887 368875332 67888888753 23457888887 99999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++|..|... .++++|||++ +.+|+++++++|+++.+
T Consensus 305 ~~g~~f~~~---------------------------------~~~~iRis~~---~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 305 RDASNFRGL---------------------------------DESYVRITTQ---RPAQNQLFIKALETFLE 340 (350)
T ss_dssp EECTTSTTC---------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred EeCccCCCC---------------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHH
Confidence 999876431 2689999988 99999999999988764
No 103
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.95 E-value=1.2e-26 Score=242.38 Aligned_cols=360 Identities=12% Similarity=0.024 Sum_probs=236.5
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
++.|+|+.+... .+++.+.+++.+.+ ... ......|.......++.+++.+.+.+.+|. +++. +|++|+|+++|
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~-~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~-~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAA-NSP-DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMT-EVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHH-TCS-CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTT-SEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHH-hcc-ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcC-CEEEecChHHH
Confidence 578999998765 35677777765544 221 000011111111233334444444444574 3321 59999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPER 195 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~ 195 (508)
+.+++.++ ..+|++|++....|+++... ++..|.+++.+|.+.+..... ........|+++++ +++
T Consensus 114 ~~~~~~~~-~~~gd~Vl~~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~--~~l--- 179 (429)
T 1yiz_A 114 LYATIQGH-VDEGDEVIIIEPFFDCYEPM---VKAAGGIPRFIPLKPNKTGGT-----ISSADWVLDNNELE--ALF--- 179 (429)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECBCCCSSSS-----EEGGGCBCCHHHHH--HHC---
T ss_pred HHHHHHHh-cCCCCEEEEcCCCchhHHHH---HHHcCCEEEEEeCCccccccc-----ccccCcccCHHHHH--HHh---
Confidence 99999998 57889999998888776554 445699999999865310000 00000012688888 554
Q ss_pred CCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCC---C-CC
Q 010538 196 DPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDL---S-KY 264 (508)
Q Consensus 196 ~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~---~-~~ 264 (508)
.+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+. |....++ . ..
T Consensus 180 ---~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 180 ---NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKK------------WNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp ---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred ---ccCceEEEECCCCCCCCccCCHHHHHHHHHHHHH------------cCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 467899999999999999998 5555666665 9999999999985 2212222 1 34
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+.|+++.|+||++| ++| +|++++++++++.+.+... ...++.+....+++.++
T Consensus 245 ~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~ 299 (429)
T 1yiz_A 245 ERTITIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMVHQ------------------------NCVYTCATPIQEAIAVG 299 (429)
T ss_dssp GGEEEEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHHHH------------------------TTTCCCCHHHHHHHHHH
T ss_pred CceEEEecchhccC-CCCcceEEEEeCHHHHHHHHHHHh------------------------hcccCCChHHHHHHHHH
Confidence 68999999999998 668 8999999888766554310 11234555556666667
Q ss_pred HHH-----HH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-------
Q 010538 343 FNL-----IN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG------- 409 (508)
Q Consensus 343 l~~-----~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------- 409 (508)
++. .. +..++++++++.++++++.+.|+++ ++++..+.. +.++++++++...
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~ 364 (429)
T 1yiz_A 300 FETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-------GMNPTVPQG--------GYFMVADWSSLDSKVDLTQE 364 (429)
T ss_dssp HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-------TCEEEECSB--------SSEEEEECCSSCTTTTCCSS
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc--------ceEEEEEccccccccccccc
Confidence 765 21 2237888899999999999999886 566665533 6789999865310
Q ss_pred -CccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 410 -SWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 410 -~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
...+..++.+.| +++||.+++|..|...... +...+++|||++ +++++
T Consensus 365 ~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~--~~~e~ 414 (429)
T 1yiz_A 365 TDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNK----------------------------HLGEDFVRYCFF--KKDEN 414 (429)
T ss_dssp SSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGG----------------------------GGTTTEEEEECC--SCHHH
T ss_pred ccCCCHHHHHHHHHHhCCEEEeCchHhCCCccc----------------------------CCCCCeEEEEec--CCHHH
Confidence 002234566666 5799999988654322100 001578999998 49999
Q ss_pred HHHHHHhhhhhhh
Q 010538 488 AKVNRCSSFDFVN 500 (508)
Q Consensus 488 v~~l~~~~~~~~~ 500 (508)
++++++.|+++++
T Consensus 415 i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 415 LQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987754
No 104
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.95 E-value=2.1e-26 Score=235.77 Aligned_cols=321 Identities=14% Similarity=0.077 Sum_probs=231.7
Q ss_pred CCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH------cCCCCCCceEEEcCCh
Q 010538 40 GTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY------FNASMKDYKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~------~~~~~~~~~i~~t~g~ 112 (508)
..++|+.+... ++++.+.+++.+.+. .... ....|.... ..++++.++++ ++++++ +|++|+|+
T Consensus 31 ~~idl~~~~~~~~~~~~v~~a~~~~~~-~~~~-~~~~y~~~~-----~~~l~~~la~~l~~~~g~~~~~~--~v~~~~G~ 101 (369)
T 3cq5_A 31 VDIRLNTNENPYPPSEALVADLVATVD-KIAT-ELNRYPERD-----AVELRDELAAYITKQTGVAVTRD--NLWAANGS 101 (369)
T ss_dssp CSEECSSCCCCSCCCHHHHHHHHHHHH-HHGG-GTTSCCCTT-----CHHHHHHHHHHHHHHHCCCCCGG--GEEEESHH
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHH-hccc-ccccCCCcc-----HHHHHHHHHHhhhhcccCCCChH--hEEECCCh
Confidence 35788877653 356777777655442 2100 011121111 13566667776 566677 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
++++++++.++ .++|++|+++...|+++.. .++..|.+++.+|.+.+..+ |+++++ +++
T Consensus 102 ~~al~~~~~~l-~~~gd~Vl~~~~~y~~~~~---~~~~~g~~~~~v~~~~~~~~---------------d~~~l~--~~i 160 (369)
T 3cq5_A 102 NEILQQLLQAF-GGPGRTALGFQPSYSMHPI---LAKGTHTEFIAVSRGADFRI---------------DMDVAL--EEI 160 (369)
T ss_dssp HHHHHHHHHHH-CSTTCEEEEEESSCTHHHH---HHHHTTCEEEEEECCTTSSC---------------CHHHHH--HHH
T ss_pred HHHHHHHHHHh-cCCCCEEEEcCCChHHHHH---HHHHcCCEEEEecCCcCCCC---------------CHHHHH--HHh
Confidence 99999999998 6788999999988876654 34556999999997654344 577777 444
Q ss_pred CCCCCCCC-CceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCC---C-CCCC-C
Q 010538 193 PERDPAGD-AYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPD---L-SKYP-V 266 (508)
Q Consensus 193 ~~~~~~~~-~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d---~-~~~~-~ 266 (508)
.+ ++++|++++++||||.++|.+++.++++. +++++|+|++|+.+....+ + ...+ .
T Consensus 161 ------~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 222 (369)
T 3cq5_A 161 ------RAKQPDIVFVTTPNNPTGDVTSLDDVERIINV------------APGIVIVDEAYAEFSPSPSATTLLEKYPTK 222 (369)
T ss_dssp ------HHHCCSEEEEESSCTTTCCCCCHHHHHHHHHH------------CSSEEEEECTTGGGCCSCCGGGGTTTCTTT
T ss_pred ------hccCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CCCEEEEECCchhhcCCcchHHHHhhCCCC
Confidence 23 67899999999999999999999999997 6799999999987653322 1 2335 6
Q ss_pred cEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH
Q 010538 267 DFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN 344 (508)
Q Consensus 267 D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~ 344 (508)
++++.|+||++| ++| +|++++++++++.+.+... ..+++....+++.++++
T Consensus 223 ~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~~--------------------------~~~~~~~~~~a~~~~l~ 275 (369)
T 3cq5_A 223 LVVSRTMSKAFD-FAGGRLGYFVANPAFIDAVMLVRL--------------------------PYHLSALSQAAAIVALR 275 (369)
T ss_dssp EEEEEESSSTTS-CGGGCCEEEEECTHHHHHHHTTSC--------------------------TTCSCHHHHHHHHHHHH
T ss_pred EEEEEechHhcC-CcccceEEEEeCHHHHHHHHHcCC--------------------------CCCCCHHHHHHHHHHhc
Confidence 799999999998 447 7999999888766554310 12355566666666666
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC
Q 010538 345 LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS 424 (508)
Q Consensus 345 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~ 424 (508)
.. ..++.+++++.++++++.+.|++. ++++. +.. ++++++.++ . +..++.+.|.++
T Consensus 276 ~~--~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~-~-----~~~~l~~~l~~~ 331 (369)
T 3cq5_A 276 HS--ADTLGTVEKLSVERVRVAARLEEL-------GYAVV-PSE--------SNFVFFGDF-S-----DQHAAWQAFLDR 331 (369)
T ss_dssp TH--HHHHTHHHHHHHHHHHHHHHHHHH-------TCEEE-CCS--------SSEEEEECC-S-----SHHHHHHHHHHT
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHhC-------CCEEC-CCC--------CeEEEEECC-C-----CHHHHHHHHHHC
Confidence 42 236778889999999999999875 57765 322 678888875 1 234588888899
Q ss_pred CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 425 GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 425 gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||.+++|. .++++|+|++ |.+|++++++.|+++++
T Consensus 332 gi~v~~~~--------------------------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 332 GVLIRDVG--------------------------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp TEECBCCS--------------------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECC--------------------------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 99998861 1478999998 89999999999988764
No 105
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.95 E-value=2.5e-27 Score=249.14 Aligned_cols=343 Identities=13% Similarity=0.031 Sum_probs=232.5
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCC-CccchhhhhhHHHHHHHHHHHHHc----CCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPH-SQSDISLATCDIVRAAREQVLDYF----NASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~la~~~----~~~~~~~~i~~t~g~ 112 (508)
++.|.|..+.... +++.+++++.+.. .....++. ..|.. .....++++.+++++ +++++ +|++|+|+
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~y~~----~~g~~~lr~~ia~~~~~g~~~~~~--~i~~t~G~ 141 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAA-AGLATREGYSGYGA----EQGQGALREAVASTFYGHAGRAAD--EIFISDGS 141 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHH-HGGGGSCCCCCSTT----TTCCHHHHHHHHHHHHTTTTCCGG--GEEEESCH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHH-HhhccccCCCCCCC----CCCcHHHHHHHHHHHHcCCCCCHH--HEEEccCH
Confidence 5789998886544 5677777765544 32221111 12211 122466788888887 77777 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe----------EEEEccCCccCccccccccccccccccc
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA----------AFAIDVEEAVDNDGLSESLVTSTKISLL 182 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~----------v~~v~~~~~~~~~~l~~~~~~~~~~~~d 182 (508)
++++.++ .++ .++|+.|+++...|+++....+. .|.+ ++.+|.+....+.
T Consensus 142 ~~al~~~-~~l-~~~gd~Vl~~~p~~~~~~~~~~~---~g~~g~~~~~~~~~~~~~~~~~~~~~~--------------- 201 (449)
T 3qgu_A 142 KCDIARI-QMM-FGSKPTVAVQDPSYPVYVDTSVM---MGMTGDHNGTGFDGIEYMVCNPDNHFF--------------- 201 (449)
T ss_dssp HHHHHHH-HHH-HCSSSCEEEEESCCTHHHHHHHH---HTCSCCBCSSSBTTEEEEECCGGGTTC---------------
T ss_pred HHHHHHH-HHH-hCCCCEEEEcCCCChhHHHHHHH---cCCcccccccccceeEEEecccccCCc---------------
Confidence 9999998 776 57899999998888877655544 4777 8889887543331
Q ss_pred hhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCC
Q 010538 183 PIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQP 258 (508)
Q Consensus 183 ~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~ 258 (508)
.+++ . .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+. +..+
T Consensus 202 -~~~~--------~--~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~---------l~~~~~~~li~Dea~~~~~~~~~~~ 261 (449)
T 3qgu_A 202 -PDLS--------K--AKRTDIIFFCSPNNPTGAAATRAQLTELVN---------FARKNGSILVYDAAYALYISNPDCP 261 (449)
T ss_dssp -CCGG--------G--CCCCSEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTGGGCCCTTSC
T ss_pred -CChh--------H--cCCCCEEEEeCCCCCCCCcCCHHHHHHHHH---------HHHHCCcEEEEEcchHhhhcCCCCC
Confidence 1122 0 156799999999999999999776666655 44559999999999986 3333
Q ss_pred CCCCCC----CCcEEEEeccccccCCCc--ceEEEEechhHhh-hccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 259 PDLSKY----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKL-LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 259 ~d~~~~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.++... ++++++.|++|++| ++| +|+++++++.++. ..+.... +. ........+.
T Consensus 262 ~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~~ 323 (449)
T 3qgu_A 262 KTIYEIPGADEVAIETCSFSKYAG-FTGVRLGWTVVPKALKYANGEPVHAD------------WN-----RVMTTCFNGA 323 (449)
T ss_dssp SSGGGSTTGGGTEEEEEECSGGGT-CTTCCCEEEECCTTCBCTTSCBHHHH------------HH-----HHHHHSCCCC
T ss_pred CCHhhccCCCCcEEEEecchhhcC-CccceeEEEecCHHHHhhhhhhHHHH------------HH-----HHhhcccCCC
Confidence 344332 46799999999998 556 8999998877542 0000000 00 0111122345
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
+.....+..++++......++++.+++.++++++.+.|+++ ++++..+.. +.++++.+++
T Consensus 324 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~----- 383 (449)
T 3qgu_A 324 SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-------GFSVYGGDD--------APYIWVGFPG----- 383 (449)
T ss_dssp CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEEESSS--------SSEEEEECTT-----
T ss_pred CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeeeCCCC--------eeEEEEECCC-----
Confidence 55555555555543222236788999999999999999886 577765543 7888888863
Q ss_pred cCHHHHHHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 412 FGYREVEKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 412 ~~~~~l~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
.+..++.+.|. ++||.+++|..|.+. .++++|||+. .|.+++++
T Consensus 384 ~~~~~~~~~l~~~~gI~v~pg~~f~~~---------------------------------~~~~iRis~~--~~~e~i~~ 428 (449)
T 3qgu_A 384 KPSWDVFAEILERCNIVTTPGSGYGPA---------------------------------GEGFVRASAF--GSRENILE 428 (449)
T ss_dssp SCHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECC--SCHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEecchHhCCC---------------------------------CCCeEEEEec--CCHHHHHH
Confidence 23345665554 469999998766542 2689999964 49999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
+++.|+++++-
T Consensus 429 ~l~~l~~~~~~ 439 (449)
T 3qgu_A 429 AVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999987754
No 106
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.95 E-value=8.2e-27 Score=247.50 Aligned_cols=358 Identities=12% Similarity=-0.006 Sum_probs=243.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
...+||+ +.++...|.+++++.+.+ .. .+|......+....++.+++++++++++|++. .+++|+|+++|+.+
T Consensus 66 ~~~~~lg-~~~~~~~p~v~~~~~~~~-~~--~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~ 138 (474)
T 1wyu_B 66 TTFYPLG-SCTMKYNPKLHEEAARLF-AD--LHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELT 138 (474)
T ss_dssp TSCCCBT-TTCCCCCCHHHHHHHHTT-SS--CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHH
T ss_pred cCccccc-cccccCCHHHHHHHHHHH-Hh--cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHH
Confidence 3578898 555556677877776642 22 23433221344567888999999999999974 47788999999987
Q ss_pred HHhhcC---CCCCC-----eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 119 VGEAFP---WSHQS-----SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 119 ~~~~l~---~~~g~-----~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
++.++. ..+|+ +|+++...|+++...+ +..|++++.||.+.++.+ |+++++ +
T Consensus 139 al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~---~~~G~~vv~v~~~~~~~~---------------d~~~L~--~ 198 (474)
T 1wyu_B 139 GILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATA---SMAGYQVREIPSGPEGEV---------------DLEALK--R 198 (474)
T ss_dssp HHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHH---HHTTCEEEEECBCTTSSB---------------CHHHHH--H
T ss_pred HHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHH---HHCCCEEEEecCCCCCCc---------------CHHHHH--H
Confidence 554431 23555 8999999999887654 446999999998766655 688898 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccc-cCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-CCCCCCCCCcE
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSR-FNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-PPDLSKYPVDF 268 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~-~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~~d~~~~~~D~ 268 (508)
++ +++|++|+++++ |++|.+ .|+++|.++|++ +|+++|+|++|+.+.. ..+...+++|+
T Consensus 199 ~i------~~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~------------~g~~li~Dea~~~~~~g~~~~~~~g~di 259 (474)
T 1wyu_B 199 EL------GPHVAALMLTNP-NTLGLFERRILEISRLCKE------------AGVQLYYDGANLNAIMGWARPGDMGFDV 259 (474)
T ss_dssp HC------STTEEEEEECSS-CTTSCCCTTHHHHHHHHHH------------HTCEEEEEGGGGGGTTTTCCHHHHTCSE
T ss_pred hh------CCCceEEEEECC-CCCcccCCCHHHHHHHHHH------------cCCEEEEeCchhhhhccCCCcccCCCcE
Confidence 55 467899999986 689998 699999999998 8999999999976654 33444457999
Q ss_pred EEEeccccccCCC-----cceEEEEechhHhhhcccccc-CceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 269 VVMSFYKIFGYPT-----GLGALIMRNDAAKLLKNTYFS-GGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 269 ~~~S~~K~~g~P~-----G~G~l~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
+++|+||+|+.|. |+|++++++++++.+...+.+ ++. .+.. .+. .....+++..++.+...+.+....
T Consensus 260 ~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~---~~~--~~~~~~~~~~~~~~~~~~~aa~~~ 333 (474)
T 1wyu_B 260 VHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEE-GFYL---DFD--RPKSIGRVRSFYGNFLALVRAWAY 333 (474)
T ss_dssp EECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSS-CEEE---ECC--CTTCCCCSSSTTSCHHHHHHHHHH
T ss_pred EEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCC-eeEe---ccc--CcccCcccccCcCcHHHHHHHHHH
Confidence 9999999988774 589999999987766522221 110 0000 000 000012334445555444444444
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS 422 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~ 422 (508)
++.+...+++++.+++.++++++.+.|+++ ++++..+... .+.+++.++. ..+..++.+.|.
T Consensus 334 l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~----~~~~~~l~~~L~ 395 (474)
T 1wyu_B 334 IRTLGLEGLKKAAALAVLNARYLKELLKEK-------GYRVPYDGPS-------MHEFVAQPPE----GFRALDLAKGLL 395 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCBCSSCSSC-------CSCEEEBCST----TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CcEecCCCCc-------ceEEEEEcCC----CCCHHHHHHHHH
Confidence 444334457777999999999999999886 4555322211 2223344421 134566888898
Q ss_pred hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 423 LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 423 ~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++||.+. +..+. ....+.+||+++.++|.+|++++++.|+++++
T Consensus 396 ~~Gi~~~-~~~~~---------------------------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~ 439 (474)
T 1wyu_B 396 ELGFHPP-TVYFP---------------------------------LIVKEALMVEPTETEAKETLEAFAEAMGALLK 439 (474)
T ss_dssp HTTCCCC-EESCS---------------------------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred HCCcccc-ccccc---------------------------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 8899863 22110 01257899999999999999999999998764
No 107
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.95 E-value=3.9e-27 Score=245.24 Aligned_cols=356 Identities=12% Similarity=0.045 Sum_probs=238.9
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CC-CCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SM-KDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~-~~~~i~~t~g~t~ 114 (508)
++.|.|..+.... +++.+.+++.+.+.... ....|.......++.+++.+.+.+.+|. ++ + +|++|+|+++
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~--~i~~~~g~~~ 102 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF---MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLR--NVLVTVGGYG 102 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHH--HEEEESHHHH
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhCCC---ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCC--cEEEECChHH
Confidence 5789998887553 46667776655432211 0011111111233444444555555554 44 4 7999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC----ccCccccccccccccccccchhhhhcCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE----AVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~----~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+++++.++ ..+|++|++....|+++... ++..|.+++.+|.+. ++... .......|+++++ +
T Consensus 103 a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~G~~~-------~~~~~~~d~~~l~--~ 169 (422)
T 3fvs_A 103 ALFTAFQAL-VDEGDEVIIIEPFFDCYEPM---TMMAGGRPVFVSLKPGPIQNGELG-------SSSNWQLDPMELA--G 169 (422)
T ss_dssp HHHHHHHHH-CCTTCEEEEEESCCTTHHHH---HHHTTCEEEEEECBCCCCCSSSCC-------BGGGSBCCHHHHH--T
T ss_pred HHHHHHHHH-cCCCCEEEEcCCCchhhHHH---HHHcCCEEEEEecccccccccccc-------cccCCCCCHHHHH--h
Confidence 999999998 68899999988777776544 445699999999875 22100 0011123789999 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSK 263 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~ 263 (508)
++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|++|+. |..+.++..
T Consensus 170 ~~------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~~ 231 (422)
T 3fvs_A 170 KF------TSRTKALVLNTPNNPLGKVFSREELELVASLCQQ------------HDVVCITDEVYQWMVYDGHQHISIAS 231 (422)
T ss_dssp TC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTCBCTTCCCCCGGG
T ss_pred hc------CCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHH------------cCcEEEEEccchhhccCCCCCCChhh
Confidence 55 467899999999999999997 4555555554 9999999999985 333344433
Q ss_pred C----CCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 264 Y----PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 264 ~----~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
. +.++++.|+||++| ++| +|++++++++++.+..... ....+.+....+
T Consensus 232 ~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 286 (422)
T 3fvs_A 232 LPGMWERTLTIGSAGKTFS-ATGWKVGWVLGPDHIMKHLRTVHQ------------------------NSVFHCPTQSQA 286 (422)
T ss_dssp STTTGGGEEEEEEHHHHHT-CGGGCCEEEECCHHHHHHHHHHHH------------------------TTTCCCCHHHHH
T ss_pred cccccCcEEEEecchhccC-CccceEEEEEeCHHHHHHHHHHHh------------------------hccCCCCcHHHH
Confidence 2 45589999999998 556 8999999988776543311 112344556666
Q ss_pred HHHHHHHHH------HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC----
Q 010538 338 SIRHGFNLI------NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP---- 407 (508)
Q Consensus 338 ~l~~al~~~------~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---- 407 (508)
++.++++.. ....++.+.+++.++++++.+.|+++ +++++.+.. +.++++.+...
T Consensus 287 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------~~~~~~~~~~~~~~~ 351 (422)
T 3fvs_A 287 AVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-------GLKPIIPQG--------SYFLITDISDFKRKM 351 (422)
T ss_dssp HHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB--------SSEEEEECHHHHHHC
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-------CCeecCCCe--------eeEEEEechhhcccc
Confidence 666666631 12346888999999999999999987 577776654 67888887531
Q ss_pred CC-----CccCHHHHHH-HHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 408 DG-----SWFGYREVEK-LASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 408 ~~-----~~~~~~~l~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+. ......++.+ +++++||.+.+|..|..+... ....+++|+|++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~~ 403 (422)
T 3fvs_A 352 PDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ----------------------------KHFDHYIRFCFVK 403 (422)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH----------------------------TTSCSEEEEECCC
T ss_pred cccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCC----------------------------CCCCCeEEEEecC
Confidence 00 0000223444 467789999999877653210 0136899999987
Q ss_pred CCCHHHHHHHHHhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~ 500 (508)
|.++++.+++.|+++++
T Consensus 404 --~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 404 --DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHh
Confidence 99999999999988765
No 108
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.95 E-value=8.3e-27 Score=241.78 Aligned_cols=350 Identities=11% Similarity=-0.002 Sum_probs=226.5
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
...-.++.++++..+.+.+++ .. +.++...+..+.......+++++.+++++|.+ + .++++ ++++|++++
T Consensus 27 ~~~~p~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~-~--~i~~~-sG~~a~~~~ 96 (398)
T 1gc0_A 27 ALVPPVYQTATFTFPTVEYGA-AC-----FAGEQAGHFYSRISNPTLNLLEARMASLEGGE-A--GLALA-SGMGAITST 96 (398)
T ss_dssp BSSCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS-E--EEEES-SHHHHHHHH
T ss_pred CcCCCccCCCccccCCHHHHH-Hh-----hcCCcCCCcccCCCChHHHHHHHHHHHHhCCC-c--EEEEC-CHHHHHHHH
Confidence 456678888888777665544 21 23343333333334567889999999999986 3 45555 457999999
Q ss_pred HhhcCCCCCCeEEEecccccchHHHHHH-HHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGIREY-ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~~~~-~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ .++|++|+++...|+++....+. ++..|++++.++.+ |+++++ +++
T Consensus 97 l~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------------d~~~l~--~~i------ 147 (398)
T 1gc0_A 97 LWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA--------------------DLQALE--AAM------ 147 (398)
T ss_dssp HHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT--------------------CHHHHH--HHC------
T ss_pred HHHH-hcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--------------------CHHHHH--Hhc------
Confidence 9998 67889999999999987765543 35679999998863 356677 444
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.++|++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....++ ..++|+++.|+||+++
T Consensus 148 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~ 214 (398)
T 1gc0_A 148 TPATRVIYFESPANPNMHMADIAGVAKIARK------------HGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLS 214 (398)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHGG------------GTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTT
T ss_pred CCCCeEEEEECCCCCCcccccHHHHHHHHHH------------cCCEEEEECCCcccccCCch-hhCceEEEECCccccC
Confidence 4578999999999999999999999999998 89999999999876644333 3579999999999999
Q ss_pred CCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 279 YPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 279 ~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+|.+ .|+++++++.++ .+.+...+ +..++.+....+++..+++. +....
T Consensus 215 ~~~~~~~G~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~-----~~~~~ 266 (398)
T 1gc0_A 215 GHGDITAGIVVGSQALVDRIRLQGLKD-----------------------MTGAVLSPHDAALLMRGIKT-----LNLRM 266 (398)
T ss_dssp CSSSCCCEEEEECHHHHHHHHHTHHHH-----------------------HTCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred CCCCCeEEEEEEChHHHHHHHHHHhhc-----------------------cCCCCCCHHHHHHHHhccch-----HHHHH
Confidence 7765 499999887654 34332111 02345565555555555543 34455
Q ss_pred HHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 356 RHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
++..+.++++.+.|++.+. ....++++++.+... ..+++++|.+++. ...+.+.+.+.|+.
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~------~~~~~~~l~~~~i~ 335 (398)
T 1gc0_A 267 DRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMS-----QPGGMIAFELKGG------IGAGRRFMNALQLF 335 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEEEC---------------------CCTTEEEEEETTH------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCC-----CCceEEEEEECCC------HHHHHHHHHhCCCc
Confidence 5666667777777766421 001123344433211 2389999998642 12367788888888
Q ss_pred ecc---CCC------CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 428 LRT---GCF------CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 428 v~~---g~~------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++. |.. |..... ..-+++.+.++|. .++.||+|++..+++++|+.+.++|+++
T Consensus 336 ~~~~s~G~~~sl~~~~~~~~~----~~~~~~~~~~~g~--------------~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 336 SRAVSLGDAESLAQHPASMTH----SSYTPEERAHYGI--------------SEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp EECSCCSCSSCEEECGGGTTT----SSSCHHHHHHTTC--------------CTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeccCCCCcceeeeccccccc----ccCCHHHHHhcCC--------------CCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 765 422 221110 0123445556654 2689999999999999999999998764
No 109
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.95 E-value=2e-26 Score=240.04 Aligned_cols=329 Identities=12% Similarity=0.059 Sum_probs=219.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++++++++|++ ++++++|+++|+++++.++ .++|++|+++..+|+++..... .++..|++++.++.+
T Consensus 55 ~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~al~~l-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 129 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL----EAVVLASGQAATFAALLAL-LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE 129 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 356788999999999975 5899999999999999998 6789999999999987665443 355679999999864
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+++++ +++ .++|++|++++++|+||.+.|+++|.++|++
T Consensus 130 ---------------------~~~l~--~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~------------ 168 (412)
T 2cb1_A 130 ---------------------PEAVR--EAL------SAKTRAVFVETVANPALLVPDLEALATLAEE------------ 168 (412)
T ss_dssp ---------------------HHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------------
T ss_pred ---------------------HHHHH--HHh------ccCCeEEEEeCCCCCCcccccHHHHHHHHHH------------
Confidence 34556 333 4578999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEechhHh-----hhc-cccccCceEEecccchh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRNDAAK-----LLK-NTYFSGGTVAASIADID 314 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~~~~~-----~l~-~~~~g~~~~~~~~~~~~ 314 (508)
+|+++|+|++|+.+....+....++|++++|+||++++|.+ +|++++.++... .+. |...|+... .......
T Consensus 169 ~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 247 (412)
T 2cb1_A 169 AGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW-EALRARC 247 (412)
T ss_dssp HTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------H-HHHGGGH
T ss_pred cCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchh-hccchHH
Confidence 89999999999987322333345799999999999987876 888888763211 111 111111000 0000001
Q ss_pred hhhhccCccccccCCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcc
Q 010538 315 FVKRRQGVEELFEDGT-ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVS 392 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~ 392 (508)
+........ ....|. .+....+.....++ .+....++..++++++.+.|.+.+ ++.++ .|.... .
T Consensus 248 ~~~~~r~~~-~~~~g~~~~~~~a~~~~~~l~-----~l~~~~~~~~~~~~~l~~~L~~~~------~v~~v~~p~~~~-~ 314 (412)
T 2cb1_A 248 FPERVRTLG-LSLCGMALSPFNAYLLFQGLE-----TVALRVARMSETARFLAERLQGHP------KVKALRYPGLPE-D 314 (412)
T ss_dssp HHHHHHHHH-TTTTCCCCCHHHHHHHHHHGG-----GHHHHHHHHHHHHHHHHHHHHTCT------TCSEEECTTSTT-C
T ss_pred HHHHHHHHH-HHhcCCCCChHHhHHHHcCCc-----hHHHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCCC-C
Confidence 110000000 001121 22222222222222 245566677789999999998873 56643 332110 0
Q ss_pred c---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC---------CCCCchHHHhhcCCChhhhhhhh
Q 010538 393 Y---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG---------CFCNPGACAKYLGLSHSDLLSNI 454 (508)
Q Consensus 393 ~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g---------~~~~~~~~~~~~~~~~s~~~~~~ 454 (508)
+ ...+++++|.+ + +. ..+.+.|.+.||.+ .+ ..|+.... .. -+++.+.++
T Consensus 315 p~~~~~~~~~~~~~~iv~~~~-~-~~-----~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~-~~---~~~~~~~~~ 382 (412)
T 2cb1_A 315 PAHRNARKYLASGGPILTLDL-G-DL-----ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTH-SR---LKEEARLQA 382 (412)
T ss_dssp TTHHHHHHHCSSSCSEEEEEC-S-SH-----HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTT-TT---SCHHHHHHT
T ss_pred ccHHHHHHhCCCCceEEEEEe-C-CH-----HHHHHHHHhCCeee-ecccCCCcceeecCccccc-cc---CCHHHHHhc
Confidence 0 02478999999 4 22 34788888999999 87 36665421 00 134566677
Q ss_pred hcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 455 EAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
|. .++.||+|++.++++++|+.+.++|++
T Consensus 383 g~--------------~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 383 GV--------------TPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TC--------------CTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CC--------------CCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 65 268999999999999999999999864
No 110
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.95 E-value=6.6e-27 Score=241.31 Aligned_cols=341 Identities=11% Similarity=-0.010 Sum_probs=232.0
Q ss_pred CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC---CCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS---MKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~---~~~~~i~~t~g~t~ 114 (508)
+++|.|+.+.... +++.+.+++.+ .......++.. ....++.+++.+.+++.+|.+ +++ +|++|+|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~~-~i~~t~g~~~ 102 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTA-SLHELEKYPLT-----AGLPELRQACANWLKRRYDGLTVDADN-EILPVLGSRE 102 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHH-TGGGGGSCCCT-----TCCHHHHHHHHHHHHHHTTTCCCCTTT-SEEEESSHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHH-HhhhccCCCCC-----CCcHHHHHHHHHHHHHhcCCCCCCCCC-eEEEcCCcHH
Confidence 5688888876544 35666666544 33333222221 112344555566666666753 431 5999999999
Q ss_pred HHHHHHhhcCCCCC-----CeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc-Cccccccccccccccccchhhhhc
Q 010538 115 ALKLVGEAFPWSHQ-----SSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV-DNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 115 al~~~~~~l~~~~g-----~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+.+++.++ ..+| ++|+++...|+++. ..++..|.+++.+|.+.++ .+ |+++++
T Consensus 103 al~~~~~~~-~~~g~~~~~d~vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~g~~~---------------d~~~l~- 162 (396)
T 3jtx_A 103 ALFSFVQTV-LNPVSDGIKPAIVSPNPFYQIYE---GATLLGGGEIHFANCPAPSFNP---------------DWRSIS- 162 (396)
T ss_dssp HHHHHHHHH-CCC---CCCCEEEEEESCCHHHH---HHHHHTTCEEEEEECCTTTCCC---------------CGGGSC-
T ss_pred HHHHHHHHH-hCCCCccCCCEEEEcCCCcHhHH---HHHHHcCCEEEEeecCCCCCcc---------------CHHHHH-
Confidence 999999998 4564 78998876666554 4455679999999985433 22 456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCC--
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLS-- 262 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~-- 262 (508)
+++ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+... .++...
T Consensus 163 -~~~------~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 226 (396)
T 3jtx_A 163 -EEV------WKRTKLVFVCSPNNPSGSVLDLDGWKEVFD---------LQDKYGFIIASDECYSEIYFDGNKPLGCLQA 226 (396)
T ss_dssp -HHH------HHTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHCCEEEEECTTTTCCSTTCCCCCHHHH
T ss_pred -Hhh------ccCcEEEEEECCCCCCCCcCCHHHHHHHHH---------HHHHcCCEEEEEccccccccCCCCCchHHhh
Confidence 333 347899999999999999999888555554 3445999999999998532 233221
Q ss_pred ------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 263 ------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 263 ------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
..+.++++.|++|.++ ++| +|+++.++++++.+.... ....++++..
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 281 (396)
T 3jtx_A 227 AAQLGRSRQKLLMFTSLSKRSN-VPGLRSGFVAGDAELLKNFLLYR------------------------TYHGSAMSIP 281 (396)
T ss_dssp HHHTTCCCTTEEEEEESTTTSS-CGGGCCEEEEECHHHHHHHHHHH------------------------HHHTCCCCHH
T ss_pred hhhcccccCcEEEEeccccccC-CcccceEEEEeCHHHHHHHHHHH------------------------hhcccCCCHH
Confidence 2467899999999887 446 799999888877665431 1123456666
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..+++.++++. ...+++.++++.++++++.+.|++. +.+..+.. +.++++.+++. +.
T Consensus 282 ~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~~~--------~~~~~~~~~~~-----~~ 338 (396)
T 3jtx_A 282 VQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQV--------FDVKLPDA--------SFYIWLKVPDG-----DD 338 (396)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT--------SCCCCCSS--------SSEEEEECTTS-----CH
T ss_pred HHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc--------CCccCCCe--------eEEEEEECCCC-----CH
Confidence 67776667663 2346788889999999999999774 22333322 67888888652 23
Q ss_pred HHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 415 REVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 415 ~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
..+.+.| +++||.+.+|..|..... ......+++|||++. |.++++++++
T Consensus 339 ~~~~~~l~~~~gi~v~~g~~~~~~~~---------------------------~~~~~~~~iRis~~~--~~~~i~~~l~ 389 (396)
T 3jtx_A 339 LAFARNLWQKAAIQVLPGRFLARDTE---------------------------QGNPGEGYVRIALVA--DVATCVKAAE 389 (396)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCCCCT---------------------------TCCTTTTEEEEECCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCChHhCCccc---------------------------ccCCCCCeEEEEEcC--CHHHHHHHHH
Confidence 3466666 678999999987754210 001136899999986 9999999999
Q ss_pred hhhhhh
Q 010538 494 SSFDFV 499 (508)
Q Consensus 494 ~~~~~~ 499 (508)
.|++++
T Consensus 390 ~l~~~l 395 (396)
T 3jtx_A 390 DIVSLY 395 (396)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 988765
No 111
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.95 E-value=1.8e-26 Score=243.16 Aligned_cols=308 Identities=13% Similarity=0.111 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHc----CC-CCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc
Q 010538 86 VRAAREQVLDYF----NA-SMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV 160 (508)
Q Consensus 86 ~~~~r~~la~~~----~~-~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~ 160 (508)
..++|+++++++ |+ +++ +|++|+|+++|+.+++.++ ..+|++|++....|+++. ..++..|++++.+|.
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~--~v~~t~G~~~al~~~~~~l-~~~Gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~ 193 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDN--DIMITSGSQQALDLIGRVF-LNPGDIVVVEAPTYLAAL---QAFNFYEPQYIQIPL 193 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTS--EEEEESSHHHHHHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEE
T ss_pred cHHHHHHHHHHHHHhcCcCChh--hEEEeCcHHHHHHHHHHHH-cCCCCEEEEeCCChHHHH---HHHHHcCCEEEEecc
Confidence 345666777766 98 666 8999999999999999998 678999998886666554 445567999999998
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
+.++ + |+++++ ++++......+++++| ++++++||||.++|.+.+.++++ +|
T Consensus 194 ~~~g-~---------------d~~~L~--~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~---------la 246 (448)
T 3aow_A 194 DDEG-M---------------KVEILE--EKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLE---------LA 246 (448)
T ss_dssp ETTE-E---------------CHHHHH--HHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHH---------HH
T ss_pred CCCC-C---------------CHHHHH--HHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHH---------HH
Confidence 7543 3 577777 5542000001368887 57899999999999775555544 34
Q ss_pred CCCCeEEEEeccccCCC----CCCCCCC---CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecc
Q 010538 240 SKGRWMVLIDAAKGCVT----QPPDLSK---YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~----~~~d~~~---~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
+++|++||+|++|+... .+.++.. .+.++++.|++|+++ | | +|++++++++++.+......
T Consensus 247 ~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~-GlriG~v~~~~~l~~~l~~~~~~-------- 316 (448)
T 3aow_A 247 SEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-P-GFRIGWMVGDPGIIRKMEIAKQS-------- 316 (448)
T ss_dssp HHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-G-GGCCEEEEECHHHHHHHHHHHHH--------
T ss_pred HHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-c-cccEEEEEeCHHHHHHHHHHHHH--------
Confidence 44999999999998632 2233332 246789999999998 7 6 79999999887766543110
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc-eEEEecCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI-NSLTVPAICRHIASLGMYVRKVLLSLRHENGAD-VCTIYGTYT 388 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~-~~~~~~~~~ 388 (508)
.. .+.+....+++.++++.. ....++.++++++++++++.+.|++.. + ++++..|..
T Consensus 317 ---------------~~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~p~~ 375 (448)
T 3aow_A 317 ---------------TD-LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM-----PEGVKWTKPEG 375 (448)
T ss_dssp ---------------HH-SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTCEECCCSB
T ss_pred ---------------hc-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEeCCCc
Confidence 11 123444455555555421 012367778888899999999998631 2 477765543
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.+++++++.. ++..++.+.|.++||.+.+|..|....
T Consensus 376 --------g~~~~v~~~~~----~~~~~l~~~l~~~gV~v~pg~~f~~~~------------------------------ 413 (448)
T 3aow_A 376 --------GMFIWVTLPDG----IDSKKMLERAIKKGVAYVPGEAFYAHR------------------------------ 413 (448)
T ss_dssp --------SSEEEEECSTT----CCHHHHHHHHHHTTEECEEGGGGSTTC------------------------------
T ss_pred --------cEEEEEEcCCC----CCHHHHHHHHHHCCcEEEcchhhcCCC------------------------------
Confidence 68899998642 344568888888899999987554321
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+++|+|++.. |.++++.+++.|.++++-
T Consensus 414 -~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 414 -DVKNTMRLNFTYV-DEDKIMEGIKRLAETIKE 444 (448)
T ss_dssp -CCCSEEEEECSSS-CTHHHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEeCCC-CHHHHHHHHHHHHHHHHH
Confidence 1257899999974 899999999999987753
No 112
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-26 Score=243.69 Aligned_cols=360 Identities=7% Similarity=-0.054 Sum_probs=234.7
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--CCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA--SMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~--~~~~~~i~~t~g~t~a 115 (508)
+++|.|..+... ++++.+.+++.+.+ ... ....|.......++.+++.+.+.+.+|. +++ +|++|+|+++|
T Consensus 57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~-~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~--~v~~t~G~~~a 130 (447)
T 3b46_A 57 RELINLGQGFFSYSPPQFAIKEAQKAL-DIP---MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAE--NVTVTTGANEG 130 (447)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHT-TSG---GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGG--GEEEESHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHH-hCc---CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh--hEEEeCCHHHH
Confidence 567888776533 24666767665543 220 0011211111223333333333333453 555 79999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC--ccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD--NDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~--~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ ..+|++|++....|+++.... +..|.+++.+|.+.... ... ........|+++++ +++
T Consensus 131 l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~~~-----~~~~~~~~d~~~l~--~~l- 198 (447)
T 3b46_A 131 ILSCLMGL-LNAGDEVIVFEPFFDQYIPNI---ELCGGKVVYVPINPPKELDQRN-----TRGEEWTIDFEQFE--KAI- 198 (447)
T ss_dssp HHHHHHHH-CCTTCEEEEEESCCTTHHHHH---HHTTCEEEEEEEECCGGGGTSC-----BCSTTSEECHHHHH--TTC-
T ss_pred HHHHHHHH-cCCCCEEEEeCCCchhHHHHH---HHcCCEEEEEeCCCcccccccc-----ccccCcccCHHHHH--Hhh-
Confidence 99999998 678999999998888766544 45699999998754310 000 00000122788999 655
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC---CCCCCCC-----CC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT---QPPDLSK-----YP 265 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~---~~~d~~~-----~~ 265 (508)
.+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+... ....+.. .+
T Consensus 199 -----~~~~~~v~l~~p~nptG~~~~~~~l~~i~~---------l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 264 (447)
T 3b46_A 199 -----TSKTKAVIINTPHNPIGKVFTREELTTLGN---------ICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ 264 (447)
T ss_dssp -----CTTEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT
T ss_pred -----ccCCeEEEEeCCCCCCCcccCHHHHHHHHH---------HHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC
Confidence 467899999999999999997555555444 3444999999999998522 1223322 36
Q ss_pred CcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 266 VDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 266 ~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
.|+++.|+||+++ ++| +|++++ ++++++.+.... .....+.+....+++.++
T Consensus 265 ~~i~i~S~sK~~~-~~G~riG~~~~~~~~l~~~l~~~~------------------------~~~~~~~~~~~~~a~~~a 319 (447)
T 3b46_A 265 LTLTVGSAGKSFA-ATGWRIGWVLSLNAELLSYAAKAH------------------------TRICFASPSPLQEACANS 319 (447)
T ss_dssp TEEEEEEHHHHTT-CTTSCCEEEECSCHHHHHHHHHHH------------------------HHHTSSCCHHHHHHHHHH
T ss_pred cEEEEecCchhcC-CcchhhEEEEeCCHHHHHHHHHHH------------------------hhccCCCChHHHHHHHHH
Confidence 8999999999998 667 899999 888876654321 011233455556666777
Q ss_pred HHHHH-hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-----------
Q 010538 343 FNLIN-SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS----------- 410 (508)
Q Consensus 343 l~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------- 410 (508)
++... +..++.++++++++++++.+.|+++ ++++..+.. +.+++++++.....
T Consensus 320 L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~--------g~~~~~~~~~~~~p~~~~~~~~~~~ 384 (447)
T 3b46_A 320 INDALKIGYFEKMRQEYINKFKIFTSIFDEL-------GLPYTAPEG--------TYFVLVDFSKVKIPEDYPYPEEILN 384 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-------TCCEECCSB--------SSEEEEECTTCCCCTTCCCCGGGSS
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe--------eEEEEEecccccCcccccccccccc
Confidence 77542 2347888999999999999999886 466665443 67888888642100
Q ss_pred ccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 411 WFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 411 ~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
..+..++.+.| +++||.+.+|..|...... ....+++|+|++. +.++++
T Consensus 385 ~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~----------------------------~~~~~~iRls~~~--~~e~l~ 434 (447)
T 3b46_A 385 KGKDFRISHWLINELGVVAIPPTEFYIKEHE----------------------------KAAENLLRFAVCK--DDAYLE 434 (447)
T ss_dssp SCHHHHHHHHHHHHTCEECBCGGGGSCGGGG----------------------------GGGTTEEEEECCS--CHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEECchHhCCCCcc----------------------------CCCCCEEEEEEeC--CHHHHH
Confidence 01233566666 4689999998655432100 0015789999984 899999
Q ss_pred HHHHhhhhhhh
Q 010538 490 VNRCSSFDFVN 500 (508)
Q Consensus 490 ~l~~~~~~~~~ 500 (508)
++++.|+++-+
T Consensus 435 ~~~~~l~~~~~ 445 (447)
T 3b46_A 435 NAVERLKLLKD 445 (447)
T ss_dssp HHHHHGGGGGT
T ss_pred HHHHHHHHHHh
Confidence 99999988644
No 113
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=6.4e-27 Score=244.49 Aligned_cols=310 Identities=13% Similarity=0.062 Sum_probs=215.5
Q ss_pred HHHHHHHHHHc----C---CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEc
Q 010538 87 RAAREQVLDYF----N---ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAID 159 (508)
Q Consensus 87 ~~~r~~la~~~----~---~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~ 159 (508)
.++|+.+++++ | ++++ +|++|+|+++|+.+++.++ ..+|++|++....|+++. ..++..|.+++.+|
T Consensus 88 ~~lr~~la~~l~~~~g~~~~~~~--~v~~t~G~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~v~ 161 (425)
T 1vp4_A 88 PVLKQQILKLLERMYGITGLDED--NLIFTVGSQQALDLIGKLF-LDDESYCVLDDPAYLGAI---NAFRQYLANFVVVP 161 (425)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCHHHH---HHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHhccCCCCCCcc--cEEEeccHHHHHHHHHHHh-CCCCCEEEEeCCCcHHHH---HHHHHcCCEEEEec
Confidence 45566677666 8 5566 8999999999999999998 578899998876666544 44556799999999
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCC--CCCCCceEE-EEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD--PAGDAYNLF-AFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~--~~~~~t~lv-~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.+.++ + |+++++ +++++.. ...+++++| ++++++||||.++|.+.+.++++
T Consensus 162 ~~~~~-~---------------d~~~l~--~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~-------- 215 (425)
T 1vp4_A 162 LEDDG-M---------------DLNVLE--RKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVE-------- 215 (425)
T ss_dssp EETTE-E---------------CHHHHH--HHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHH--------
T ss_pred cCCCC-C---------------CHHHHH--HHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHH--------
Confidence 86543 3 567776 4442100 001367887 57999999999999765555544
Q ss_pred CCCCCCCeEEEEeccccCCC----CCCCCC---CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEE
Q 010538 237 SPFSKGRWMVLIDAAKGCVT----QPPDLS---KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~----~~~d~~---~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 307 (508)
+|+++|+++|+|++|+... .+.++. ..+.++++.|++|+++ | | +|++++++++++.+.....
T Consensus 216 -~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~r~G~~~~~~~~~~~l~~~~~------ 286 (425)
T 1vp4_A 216 -IAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-P-GLRIGMVAGSKEFIRKIVQAKQ------ 286 (425)
T ss_dssp -HHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-G-GGCEEEEECCHHHHHHHHHHHH------
T ss_pred -HHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-c-ccceEEEeeCHHHHHHHHHHhh------
Confidence 3444999999999998632 223332 2256799999999999 7 6 7999999888776654311
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI-NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGT 386 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~ 386 (508)
. ...+.+....+++.++++.. .+..++.+++++.++++++.+.|++... ..+++++..+
T Consensus 287 -----------------~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~g~~~~~~ 346 (425)
T 1vp4_A 287 -----------------S-ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFS--DIPGVKWVKS 346 (425)
T ss_dssp -----------------H-HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHST--TSTTCEECCC
T ss_pred -----------------h-hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCceEEecC
Confidence 0 11233555566666666542 0123678888899999999999987410 0014777655
Q ss_pred CCCCcccCCCCceEEEEeeC-CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCcc
Q 010538 387 YTSEVSYHDTGSMVSFNLKR-PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDND 465 (508)
Q Consensus 387 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 465 (508)
.. ++++++.++. .+.. ++.+.|.++||.+++|..|....
T Consensus 347 ~~--------g~~~~~~~~~~~~~~-----~l~~~l~~~gi~v~~g~~f~~~~--------------------------- 386 (425)
T 1vp4_A 347 EG--------GLFIWLTLPEGFDTW-----EMFEYAKRKKVFYVPGRVFKVYD--------------------------- 386 (425)
T ss_dssp SB--------SSEEEEECCTTCCTT-----TTHHHHHHHTEECEEGGGGCTTC---------------------------
T ss_pred Cc--------cEEEEEEcCCCCCHH-----HHHHHHHHCCCEEECchhhcCCC---------------------------
Confidence 43 6789999874 2333 36777777799999987554311
Q ss_pred ccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 466 IIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 466 ~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
...+++|||++.. |.+|++++++.|+++++.+
T Consensus 387 ----~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 387 ----EPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp ----CCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 1257899999975 9999999999999887654
No 114
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=4.4e-27 Score=243.73 Aligned_cols=350 Identities=10% Similarity=0.001 Sum_probs=233.0
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLV 119 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~ 119 (508)
...+.|+.+++...+.+.+++. . +.++...+..+.......+++++++++++|++ + .++ ++++++|++++
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~--~i~-~~sG~~a~~~~ 95 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAA-R-----FALEESGYIYTRLGNPTTDALEKKLAVLERGE-A--GLA-TASGISAITTT 95 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHH-H-----C-----CCSBTTTCCHHHHHHHHHHHHHHTCS-E--EEE-ESSHHHHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHH-h-----hcCCCCCCceeCCCChHHHHHHHHHHHHhCCC-c--EEE-ECCHHHHHHHH
Confidence 5778999998888877766543 2 12232233333334567889999999999986 3 444 55566999999
Q ss_pred HhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 120 GEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 120 ~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
+.++ .++|++|+++...|+++....+ .++..|.+++.+|.+ |+++++ +++
T Consensus 96 l~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--------------------d~~~l~--~~i------ 146 (398)
T 2rfv_A 96 LLTL-CQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA--------------------KPEEIR--AAM------ 146 (398)
T ss_dssp HHHH-CCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT--------------------SHHHHH--HHC------
T ss_pred HHHH-hCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC--------------------CHHHHH--Hhc------
Confidence 9998 6789999999999988876543 346679999999874 256666 444
Q ss_pred CCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 199 GDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
.+++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+..+..+ ..++|+++.|+||+++
T Consensus 147 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~ 213 (398)
T 2rfv_A 147 RPETKVVYIETPANPTLSLVDIETVAGIAHQ------------QGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYIN 213 (398)
T ss_dssp CTTEEEEEEESSBTTTTBCCCHHHHHHHHHH------------TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTT
T ss_pred CCCCeEEEEECCCCCCCcccCHHHHHHHHHH------------cCCEEEEECCCcccccCCch-hhCCcEEEEeCccccc
Confidence 4578999999999999999999999999998 99999999999987654322 4579999999999998
Q ss_pred CCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 279 YPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 279 ~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+|.+ .|+++++++.++ .+.+...+ +..++.+....+++.++++.+ ....
T Consensus 214 ~~g~~~~G~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~-----~~~~ 265 (398)
T 2rfv_A 214 GHGDVIGGIIVGKQEFIDQARFVGLKD-----------------------ITGGCMSPFNAWLTLRGVKTL-----GIRM 265 (398)
T ss_dssp CSSCCCCEEEEECHHHHHHHHHTHHHH-----------------------TTCCCCCHHHHHHHHHHHTTH-----HHHH
T ss_pred CCCCceEEEEEECHHHHHHHHHHHHHh-----------------------CCCCCCCHHHHHHHHhhhhhH-----HHHH
Confidence 7866 499999988765 44433111 112455555555555565532 3334
Q ss_pred HHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHh---hC
Q 010538 356 RHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLAS---LS 424 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~---~~ 424 (508)
++..+..+++.+.|++.+. ....|+++++.+.. ...+++++|.+++.. .+..+.++ ..
T Consensus 266 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~-----~~~g~~~~~~~~~~~------~~~~~l~~~~~~~ 334 (398)
T 2rfv_A 266 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM-----SLPGGIISFEIAGGL------EAGRRMINSVELC 334 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC-----SSCCSEEEEEETTHH------HHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC-----CCCceEEEEEEcCCH------HHHHHHHHhCCcc
Confidence 4455666666677765420 00112333333211 013899999886420 12333443 34
Q ss_pred CCeeccCCCCC------chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 425 GIQLRTGCFCN------PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 425 gI~v~~g~~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
|+.++.|..++ .... . .+ +++.+.++|. .++.+|+|++..++++++++++++++++
T Consensus 335 ~i~~~~G~~~~li~~~~~~~~-~--~~-~~~~~~~~g~--------------~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 335 LLAVSLGDTETLIQHPASMTH-S--PV-APEERLKAGI--------------TDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp EECSCCSSSSCEEECHHHHTS-S--SS-CHHHHHHTTC--------------CTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eeccCCCCcceeeeccccccc-c--cC-CHHHHHhcCC--------------CCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 78888885432 1110 0 00 1233334433 2689999999999999999999998753
No 115
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=5e-26 Score=229.96 Aligned_cols=307 Identities=15% Similarity=0.166 Sum_probs=222.3
Q ss_pred CCCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC---CCCCCceEEEcCChHH
Q 010538 39 NGTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN---ASMKDYKCIFTSGATA 114 (508)
Q Consensus 39 ~~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~---~~~~~~~i~~t~g~t~ 114 (508)
++++||+++... ++++.+.+++.+.+... ....|.. . ...++|+.++++++ ++++ +|++|+|+++
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~----~-~~~~lr~~la~~~~~~~~~~~--~v~~~~G~~~ 87 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD----ALRIYYD----S-PDEELIEKILSYLDTDFLSKN--NVSVGNGADE 87 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGG----GGGSCCC----S-SCHHHHHHHHHHHTCSSCCGG--GEEEESSHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhh----hhhcCCC----C-chHHHHHHHHHHcCCCCCCHH--HEEEcCChHH
Confidence 468999999874 45788887765533111 0111111 1 15678999999999 8877 8999999999
Q ss_pred HHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 115 ALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 115 al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++++++.++ |++|+++ ..|+++. ..++..|.+++.+|.+++..+ | ++ .+
T Consensus 88 al~~~~~~~----gd~Vl~~-p~y~~~~---~~~~~~g~~~~~v~~~~~~~~---------------d---~~---~l-- 136 (335)
T 1uu1_A 88 IIYVMMLMF----DRSVFFP-PTYSCYR---IFAKAVGAKFLEVPLTKDLRI---------------P---EV---NV-- 136 (335)
T ss_dssp HHHHHHHHS----SEEEECS-SSCHHHH---HHHHHHTCEEEECCCCTTSCC---------------C---CC---CC--
T ss_pred HHHHHHHHh----CCcEEEC-CCcHHHH---HHHHHcCCeEEEeccCCCCCC---------------C---HH---Hc--
Confidence 999999998 7888877 6666554 445556999999988644333 1 12 11
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CC-CCCC-CCCCCCcEEEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VT-QPPD-LSKYPVDFVVM 271 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~-~~~d-~~~~~~D~~~~ 271 (508)
+++++|++++++||||.++|.+++.++++. .| ++|+|++|+. .. ..++ +...+.++++.
T Consensus 137 -----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~------------~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~ 198 (335)
T 1uu1_A 137 -----GEGDVVFIPNPNNPTGHVFEREEIERILKT------------GA-FVALDEAYYEFHGESYVDFLKKYENLAVIR 198 (335)
T ss_dssp -----CTTEEEEEESSCTTTCCCCCHHHHHHHHHT------------TC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEE
T ss_pred -----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHh------------CC-EEEEECcchhhcchhHHHHhhhCCCEEEEe
Confidence 467999999999999999999999999996 48 8999999973 11 1122 23345789999
Q ss_pred eccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhc
Q 010538 272 SFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSL 349 (508)
Q Consensus 272 S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 349 (508)
|+||++| ++| +|++++++++++.+.+.. ...+.+....+++.++++.. .
T Consensus 199 s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~--~ 249 (335)
T 1uu1_A 199 TFSKAFS-LAAQRVGYVVASEKFIDAYNRVR--------------------------LPFNVSYVSQMFAKVALDHR--E 249 (335)
T ss_dssp ESTTTTT-CGGGCCEEEEECHHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHHTH--H
T ss_pred cchhhcC-CcccCeEEEEeCHHHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCH--H
Confidence 9999998 667 799999988876665431 01255666666666676642 2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec
Q 010538 350 TVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR 429 (508)
Q Consensus 350 g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 429 (508)
.++++.+++.++++++.+.|+++ ++++. +.. ++++++.+++ .+..++.+.|.++||.++
T Consensus 250 ~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~~--------~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~ 308 (335)
T 1uu1_A 250 IFEERTKFIVEERERMKSALREM-------GYRIT-DSR--------GNFVFVFMEK-----EEKERLLEHLRTKNVAVR 308 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------TCCBC-CCC--------SSEEEEECCT-----HHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CcEEc-CCC--------CeEEEEECCC-----CCHHHHHHHHHHCCEEEE
Confidence 36788899999999999999876 34443 222 6788888754 123457788888999998
Q ss_pred cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 430 TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 430 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
++ .+++|+|++ +.+|+++++++|+++
T Consensus 309 ~~----------------------------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 309 SF----------------------------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp EE----------------------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred EC----------------------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 72 468999996 678999999998765
No 116
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.95 E-value=3.9e-26 Score=233.83 Aligned_cols=344 Identities=14% Similarity=0.056 Sum_probs=232.6
Q ss_pred chHHHHHHhhccCC--CCCeeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC--
Q 010538 25 SIDQIRATEFKRLE--NGTVYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA-- 99 (508)
Q Consensus 25 ~~~~~r~~~f~~~~--~~~iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-- 99 (508)
.+..++. .+..+. .+++.|+.+.... +|+.+.+++.+ ........+. .....++.+++.+.+++.+|+
T Consensus 8 ~~~~~~~-~~~~~~~~g~~i~l~~~~~~~~~~~~v~~a~~~-~~~~~~~y~~-----~~g~~~lr~~la~~l~~~~g~~~ 80 (376)
T 3ezs_A 8 PFERLRA-LLKEITPKKRGLDLGIGEPQFETPKFIQDALKN-HTHSLNIYPK-----SAFEESLRAAQRGFFKRRFKIEL 80 (376)
T ss_dssp HHHHHHH-HHTTCCCSSCCCBCSSCCCCSCCCHHHHHHHHT-TGGGGGSCCC-----TTCCHHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHH-HHHhhhccCCEEEeCCCCCCCCCCHHHHHHHHH-hhhhcCCCCC-----CCCCHHHHHHHHHHHHHHhCCCC
Confidence 3444554 443331 3678888776544 45666666544 3222222221 111233444455555555587
Q ss_pred CCCCceEEEcCChHHHHHHHHhhcCCCC--CCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccc
Q 010538 100 SMKDYKCIFTSGATAALKLVGEAFPWSH--QSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 100 ~~~~~~i~~t~g~t~al~~~~~~l~~~~--g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++ +|++|+|+|+++++++.++ .++ |++|++....|+++. ..++..|.+++.+|.+.+..++
T Consensus 81 ~~~--~i~~t~g~~~al~~~~~~~-~~~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~---------- 144 (376)
T 3ezs_A 81 KEN--ELISTLGSREVLFNFPSFV-LFDYQNPTIAYPNPFYQIYE---GAAKFIKAKSLLMPLTKENDFT---------- 144 (376)
T ss_dssp CGG--GEEEESSSHHHHHHHHHHH-TTTCSSCEEEEEESCCTHHH---HHHHHTTCEEEEEECCGGGTSC----------
T ss_pred CHH--HEEECcCcHHHHHHHHHHH-cCCCCCCEEEEecCCcHhHH---HHHHHcCCEEEEcccCCCCCcc----------
Confidence 666 8999999999999999998 577 899998887666554 4455679999999987654331
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
+ +++ +++ .+++++|++++++||||.++|.+++.++++ +|+++|+++|+|++|+....
T Consensus 145 -----~-~l~--~~~------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~ 201 (376)
T 3ezs_A 145 -----P-SLN--EKE------LQEVDLVILNSPNNPTGRTLSLEELISWVK---------LALKHDFILINDECYSEIYE 201 (376)
T ss_dssp -----C-CCC--HHH------HHHCSEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBS
T ss_pred -----h-hHH--hhh------ccCCCEEEEcCCCCCcCCCCCHHHHHHHHH---------HHHHcCcEEEEEccchhhcc
Confidence 2 223 221 246799999999999999999777777655 44459999999999986322
Q ss_pred ---CCCCC---------CCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 258 ---PPDLS---------KYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 258 ---~~d~~---------~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+.++. ..+.++++.|+||++| ++| +|+++.++++++.+.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~---------------------- 258 (376)
T 3ezs_A 202 NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSS-APGLRSGFIAGDSRLLEKYKAFRA---------------------- 258 (376)
T ss_dssp SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHHT----------------------
T ss_pred CCCCCCHHHccccccccccCcEEEEecchhccC-CccceeEEEeeCHHHHHHHHHHHh----------------------
Confidence 33321 3567899999999997 446 7999999888776654311
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
...++.+....+++.++++. ...++++++++.++++++.+.|+. +. .+. .+.++++.
T Consensus 259 --~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~---------~~--~~~--------~~~~~~~~ 315 (376)
T 3ezs_A 259 --YLGYTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFKN---------TL--IYP--------YSFYVYLP 315 (376)
T ss_dssp --TTCCCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHSTT---------CC--CCS--------BSSEEEEE
T ss_pred --hhcCCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhcC---------CC--CCC--------cceEEEEE
Confidence 11235566666666666664 223678888888889998888861 22 222 27888888
Q ss_pred eeCCCCCccCHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 404 LKRPDGSWFGYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
++ + ..++.+.|.+ +||.+++|..|.... ...+++|||++.
T Consensus 316 ~~--~-----~~~~~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~- 356 (376)
T 3ezs_A 316 VQ--N-----GENFAKTLYQNEGIITLPALYLGRNR-------------------------------IGADYVRLALVY- 356 (376)
T ss_dssp CS--C-----HHHHHHHHHHHHCCBCEEGGGGCSTT-------------------------------TTTTEEEEECCS-
T ss_pred CC--C-----HHHHHHHHHHhCCEEEeCcHHhCCCC-------------------------------CCCCeEEEEEcC-
Confidence 86 1 2347777766 899999988765321 126899999984
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
|.+|++++++.|+++++
T Consensus 357 -~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 357 -DTPLLEKPLEIIETYRE 373 (376)
T ss_dssp -CHHHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 99999999999998765
No 117
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.95 E-value=6.5e-27 Score=246.41 Aligned_cols=285 Identities=16% Similarity=0.146 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc--C
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV--E 161 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~--~ 161 (508)
...+++++++|+ +|++ + ++++|+|+|+|+.+++.++ .++|++|+++...|+++...+.. .|++++.++. +
T Consensus 57 ~~~~~~~~~la~-~g~~-~--~v~~~~G~t~a~~~~~~a~-~~~gd~Vlv~~~~h~s~~~~~~~---~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-D--GYFLVNGTTSGILSVIQSF-SQKKGDILMARNVHKSVLHALDI---SQQEGHFIETHQS 128 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-E--EEEESSHHHHHHHHHHHTT-TTSSSCEEECTTCCHHHHHHHHH---HTCCEEECEEEEC
T ss_pred hHHHHHHHHHHh-cCCC-c--eEEEeCCHHHHHHHHHHHh-cCCCCEEEEecCccHHHHHHHHH---cCCeEEEEeCeec
Confidence 457889999999 9987 4 7999999999999999998 68899999999999988766554 4899999887 4
Q ss_pred Cc----cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccC
Q 010538 162 EA----VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEIS 237 (508)
Q Consensus 162 ~~----~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~ 237 (508)
.+ ..+ |++++. ++++++|++++ .|++|.+.|+++|.++|++
T Consensus 129 ~~~~~~~~~---------------d~~~l~-----------~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~-------- 173 (446)
T 2x3l_A 129 PLTNHYNKV---------------NLSRLN-----------NDGHKLVVLTY-PNYYGETFNVEEVIKSLHQ-------- 173 (446)
T ss_dssp TTTSSEEEE---------------EC------------------CCEEEEES-SCTTSCCCCHHHHHHHHHH--------
T ss_pred cccCcCCCC---------------CHHHHc-----------CCCceEEEEEC-CCCCeEecCHHHHHHHHHh--------
Confidence 32 122 223222 45789999999 6779999999999999998
Q ss_pred CCCCCCeEEEEeccccCCCC-----CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccc
Q 010538 238 PFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 238 ~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+|+++++|++|+. .. +.+....++|+++.|+||++++|.|+|+++++++.++ +.+...+
T Consensus 174 ----~~~~livDea~~~-~~~f~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~---------- 237 (446)
T 2x3l_A 174 ----LNIPVLIDEAHGA-HFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEY---------- 237 (446)
T ss_dssp ----TTCCEEEECTTCT-TTTSTTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHH----------
T ss_pred ----cCCeEEEcchhhh-hhccCCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHH----------
Confidence 9999999999986 22 5565566789999999996665888999999988654 2222100
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcc
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVS 392 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~ 392 (508)
...+..++++...++++.++++++...|.+++.++..++++++++. . ++++.+..
T Consensus 238 ----------~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g---------~~~~~~~~---- 292 (446)
T 2x3l_A 238 ----------LSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--G---------FEMLQVDD---- 292 (446)
T ss_dssp ----------HHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--T---------CEEEECSS----
T ss_pred ----------HHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C---------CEECcCCC----
Confidence 1234567888888999999999998888777889999999998877 2 45555432
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeec-cCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLR-TGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~-~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
+..+++.+++ .+..++.+.|.++||.++ +|
T Consensus 293 ----~~~l~i~~~~-----~~~~~l~~~L~~~GI~v~~~g---------------------------------------- 323 (446)
T 2x3l_A 293 ----PLKLLIKYEG-----FTGHDIQNWFMNAHIYLELAD---------------------------------------- 323 (446)
T ss_dssp ----TTEEEEECTT-----SCHHHHHHHHHHTTEEESEEC----------------------------------------
T ss_pred ----CeEEEEEeCC-----cCHHHHHHHHHHCCCEEEecC----------------------------------------
Confidence 3467888763 334568889988899987 42
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+.+|++++.++|.+|+ +++++|+++++..
T Consensus 324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 35799999999999999 9999999887543
No 118
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.95 E-value=4.1e-26 Score=236.39 Aligned_cols=345 Identities=13% Similarity=0.042 Sum_probs=229.4
Q ss_pred CCeeeeCCCCCC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc----C--CCCCCceEEEcC
Q 010538 40 GTVYLDHAGATL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF----N--ASMKDYKCIFTS 110 (508)
Q Consensus 40 ~~iyld~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~--~~~~~~~i~~t~ 110 (508)
+.+.|..+.... +++.+.+++.+.+ ..... ... |... ....++++.+++++ | ++++ +|++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~-~~~~~-~~~-y~~~----~~~~~l~~~la~~~~~~~g~~~~~~--~v~~t~ 105 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVL-EKEPK-SVM-YTPA----NGIPELREELAAFLKKYDHLEVSPE--NIVITI 105 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHH-HHCGG-GGS-CCCT----TCCHHHHHHHHHHHHHHSCCCCCGG--GEEEES
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHH-hhccc-ccc-CCCC----CCCHHHHHHHHHHHHHhcCCCCCcc--eEEEec
Confidence 678887654322 3455555554433 22100 001 1111 11345666666666 8 4566 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCC
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGA 190 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~ 190 (508)
|+|+|+.+++.++ ..+|++|++....|+++ ...++..|++++.+|.+.++ + |+++++ +
T Consensus 106 g~t~a~~~~~~~~-~~~gd~vl~~~p~~~~~---~~~~~~~g~~~~~v~~~~~~-~---------------d~~~l~--~ 163 (407)
T 2zc0_A 106 GGTGALDLLGRVL-IDPGDVVITENPSYINT---LLAFEQLGAKIEGVPVDNDG-M---------------RVDLLE--E 163 (407)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEEESCCHHH---HHHHHTTTCEEEEEEEETTE-E---------------CHHHHH--H
T ss_pred CHHHHHHHHHHHh-cCCCCEEEEeCCChHHH---HHHHHHcCCEEEEcccCCCC-C---------------CHHHHH--H
Confidence 9999999999998 67889999887666554 44556679999999986543 3 577777 5
Q ss_pred CCCCCCCCCCCceEE-EEeCCCCCCccccCHH---HHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC----CCCCC
Q 010538 191 SFPERDPAGDAYNLF-AFPSECNFSGSRFNLD---LINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ----PPDLS 262 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv-~~~~~~n~tG~~~~i~---~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~----~~d~~ 262 (508)
++++.....+++++| ++++++||||.++|.+ +|.++|++ +|+++|+|++|+.+.. ..++.
T Consensus 164 ~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~------------~~~~li~De~~~~~~~~~~~~~~~~ 231 (407)
T 2zc0_A 164 KIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASK------------YDLLIIEDTAYNFMRYEGGDIVPLK 231 (407)
T ss_dssp HHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHH------------HTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred HHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEECCCcccccCCCCCCChh
Confidence 542000001367887 5789999999999998 56666665 9999999999986432 23333
Q ss_pred CC---CCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 263 KY---PVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 263 ~~---~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
.. +.++++.|+||+++ |+ .+|++++++++++.+.+....+ . .+.+.....+
T Consensus 232 ~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~~ 286 (407)
T 2zc0_A 232 ALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPI-----------------------D-FCAPAISQYI 286 (407)
T ss_dssp GGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTT-----------------------T-SSSCHHHHHH
T ss_pred hcCCCCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHhh-----------------------c-CCCCHHHHHH
Confidence 22 45688999999999 73 2899999988877665431111 1 1123444555
Q ss_pred HHHHHHHH-Hh-cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHH
Q 010538 339 IRHGFNLI-NS-LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYRE 416 (508)
Q Consensus 339 l~~al~~~-~~-~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 416 (508)
+.++++.. .+ ..++.+++++.++++++.+.|++.. ++++++.+.. +.+++++++.. ++..+
T Consensus 287 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~--------~~~~~~~~~~~----~~~~~ 349 (407)
T 2zc0_A 287 ALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL-----PNAEFTKPIA--------GMFVMFFLPEG----ADGIS 349 (407)
T ss_dssp HHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC-----TTSCBCCCSB--------SSEEEEECSTT----CCHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEecCCC--------cEEEEEEcCCC----CCHHH
Confidence 55555532 11 3577888999999999999997731 2455554432 67888988642 34456
Q ss_pred HHHHHhhC-CCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 417 VEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 417 l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+.+.|.++ ||.+++|..|..+. ...+++|+|++.. |.+|++++++.|
T Consensus 350 l~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~~-~~~~i~~~~~~l 397 (407)
T 2zc0_A 350 FANELMEREGVVVVPGKPFYTDE-------------------------------SGKNAIRLNFSRP-SKEEIPIGIKKL 397 (407)
T ss_dssp HHHHHHHHTCEECBCSGGGCSSS-------------------------------CCTTEEEEECSSS-CTTHHHHHHHHH
T ss_pred HHHHHHHhCCeEEECchhccCCC-------------------------------CCCCeEEEEeCCC-CHHHHHHHHHHH
Confidence 88888777 99999987654321 0257899999987 899999999999
Q ss_pred hhhhhh
Q 010538 496 FDFVNF 501 (508)
Q Consensus 496 ~~~~~~ 501 (508)
+++++-
T Consensus 398 ~~~l~~ 403 (407)
T 2zc0_A 398 AKLYKE 403 (407)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 119
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.95 E-value=4.5e-26 Score=237.62 Aligned_cols=315 Identities=10% Similarity=0.038 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+++++.+|+++|++ ++++++|+++|+++++.++ .++|++|+++..+|+++...+ ..++..|+++..++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~----~~i~~ssGt~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGA----GCVLFPCGAAAVANSILAF-IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred CchHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 455788999999999985 3455678899999999998 678999999999998877654 3456679999999764
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ ++| +++|++|++++++||+|.+.|+++|.++|++ . .
T Consensus 156 --------------------d~~~le--~ai------~~~tklV~~e~~~NptG~v~dl~~I~~la~~--------~--~ 197 (415)
T 2fq6_A 156 --------------------IGADIV--KHL------QPNTKIVFLESPGSITMEVHDVPAIVAAVRS--------V--V 197 (415)
T ss_dssp --------------------CGGGGG--GGC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH--------H--C
T ss_pred --------------------CHHHHH--Hhh------ccCCcEEEEECCCCCCCEeecHHHHHHHHHh--------h--c
Confidence 255667 444 4679999999999999999999999999983 0 1
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+|+++++|++|+.+.....+ .+++|+++.|+||+++++.+ .|+++.+++.++.+....
T Consensus 198 ~g~~livD~a~a~~~~~~p~-~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------------------- 257 (415)
T 2fq6_A 198 PDAIIMIDNTWAAGVLFKAL-DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------------------- 257 (415)
T ss_dssp TTCEEEEECTTTTTTSSCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-------------------
T ss_pred CCCEEEEECCCcccccCCcc-ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH-------------------
Confidence 69999999999865322222 35799999999999994433 699998887765554321
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc-----
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY----- 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~----- 393 (508)
....++.+....+.+..+++.+ ....++..+.++.+.+.|++.+ .++ +.-|.-.. .+
T Consensus 258 -----~~~G~~~~~~~a~~~~~~l~~l-----~~r~~~~~~n~~~l~~~L~~~~------~v~~v~~p~l~~-~~~~~~~ 320 (415)
T 2fq6_A 258 -----YLMGQMVDADTAYITSRGLRTL-----GVRLRQHHESSLKVAEWLAEHP------QVARVNHPALPG-SKGHEFW 320 (415)
T ss_dssp -----HHTTCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTSTT-STTHHHH
T ss_pred -----HhcCCCCCHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHcCC------CeeEEECCCCCC-CccHHHH
Confidence 0011222323233333444443 3445555667777777787753 343 22221100 00
Q ss_pred ----CCCCceEEEEeeCC-CCCccCHHHHHHHHhhCCCeeccCCCCCchH---HHhhcCCChhhhhh--hhhcCCccCCC
Q 010538 394 ----HDTGSMVSFNLKRP-DGSWFGYREVEKLASLSGIQLRTGCFCNPGA---CAKYLGLSHSDLLS--NIEAGHVCWDD 463 (508)
Q Consensus 394 ----~~~~~~v~~~~~~~-~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~---~~~~~~~~~s~~~~--~~~~~~~~~~~ 463 (508)
...+++++|.+++. +.. +...+...|+..++.++.|..|+... +. .+|+++. ++|.
T Consensus 321 ~~~~~~~g~i~sf~l~g~~~~~--~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~-----~~s~~~~~~~~g~------- 386 (415)
T 2fq6_A 321 KRDFTGSSGLFSFVLKKKLNNE--ELANYLDNFSLFSMAYSWGGYESLILANQPE-----HIAAIRPQGEIDF------- 386 (415)
T ss_dssp HHHCSCCCSEEEEEESSCCCHH--HHHHHHTTCSSCEECSCCCSSSCEEEEECHH-----HHHTTCTTCCCCC-------
T ss_pred HhhCCCCceEEEEEECCCCCHH--HHHHHHHhCCcCeEeccCCCCceeEEecCCC-----ccccccchhhcCC-------
Confidence 02478999999752 111 11123333344467789998887532 10 1233332 3433
Q ss_pred ccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 464 NDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 464 ~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
.++.||+|++.++++|+|+.+.++|+.+
T Consensus 387 -------~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 387 -------SGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp -------CSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred -------CCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 3689999999999999999999998753
No 120
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=5.6e-26 Score=235.93 Aligned_cols=321 Identities=15% Similarity=0.071 Sum_probs=231.1
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
.+|.+++++.+.+. . ++.....+..........++++++++++++.+. .+++ +++++|+..++.++ ..+|+.|
T Consensus 74 ~~p~v~~a~~~~l~-~-~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~---~i~~-~sGt~a~~~~l~~~-~~~gd~V 146 (409)
T 3kki_A 74 NHPLIKARLAKSLL-E-EQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE---CLLS-QSGWNANVGLLQTI-CQPNTNV 146 (409)
T ss_dssp TCHHHHHHHHHHHH-S-CCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE---EEEE-SCHHHHHHHHHHHH-CCTTCEE
T ss_pred CCHHHHHHHHHHHH-H-cCCCCCccccccCCcHHHHHHHHHHHHHhCCCe---EEEe-cchHHHHHHHHHHh-cCCCCEE
Confidence 47888888766543 2 222221222222233456678899999999863 3555 55579999999988 6889999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC 211 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~ 211 (508)
+++...|+++..... ..|.+++.++.. |+++++ +++. ..++++|++++++
T Consensus 147 l~~~~~~~~~~~~~~---~~g~~~~~~~~~--------------------d~~~le--~~l~-----~~~~~~vi~~~~~ 196 (409)
T 3kki_A 147 YIDFFAHMSLWEGAR---YANAQAHPFMHN--------------------NCDHLR--MLIQ-----RHGPGIIVVDSIY 196 (409)
T ss_dssp EEETTSCHHHHHHHH---HTTCEEEEECTT--------------------CHHHHH--HHHH-----HHCSCEEEEESBC
T ss_pred EECCCcCHHHHHHHH---HcCCeEEEecCC--------------------CHHHHH--HHHH-----hcCCeEEEECCCC
Confidence 999999988776544 358888877652 355666 4442 1246999999999
Q ss_pred CCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC---------CCCCCCCcEEEEeccccccCCCc
Q 010538 212 NFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP---------DLSKYPVDFVVMSFYKIFGYPTG 282 (508)
Q Consensus 212 n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~---------d~~~~~~D~~~~S~~K~~g~P~G 282 (508)
||||.+.|+++|.++|++ +|+++|+|++|+.+.... ++. .++|+++.|+||+++ +.|
T Consensus 197 nptG~~~~l~~l~~la~~------------~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~-~~g 262 (409)
T 3kki_A 197 STLGTIAPLAELVNISKE------------FGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFA-YRA 262 (409)
T ss_dssp TTTCCBCCHHHHHHHHHH------------HTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTC-SSC
T ss_pred CCCCCcCCHHHHHHHHHH------------cCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhC-CCc
Confidence 999999999999999998 999999999998754321 121 257999999999999 545
Q ss_pred ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 010538 283 LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLG 362 (508)
Q Consensus 283 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 362 (508)
|+++.++++++.+..... ... ..++.+...++++.++++.+.+. +.+++++.+++
T Consensus 263 -g~v~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~ 317 (409)
T 3kki_A 263 -GAIWCNNEVNRCVPFISY---------------------PAI-FSSTLLPYEAAGLETTLEIIESA--DNRRQHLDRMA 317 (409)
T ss_dssp -EEEEESSSGGGTHHHHCH---------------------HHH-HSBCCCHHHHHHHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred -eEEEECHHHHHHHHHhCc---------------------Ccc-ccCCCcHHHHHHHHHHHHHHhcC--HHHHHHHHHHH
Confidence 999999888765543211 001 12335666777888888887664 78889999999
Q ss_pred HHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhh
Q 010538 363 MYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKY 442 (508)
Q Consensus 363 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~ 442 (508)
+++.+.|+++ ++++.+ . ++++++.++... +..++.+.|.++||.++++..+..+
T Consensus 318 ~~l~~~L~~~-------g~~~~~--~--------~~~~~~~~~~~~----~~~~~~~~L~~~Gv~v~~~~~~~~~----- 371 (409)
T 3kki_A 318 RKLRIGLSQL-------GLTIRS--E--------SQIIGLETGDER----NTEKVRDYLESNGVFGSVFCRPATS----- 371 (409)
T ss_dssp HHHHHHHHTT-------TCCCCC--S--------SSEEEEEEESHH----HHHHHHHHHHHTTEECEEECTTSSC-----
T ss_pred HHHHHHHHHc-------CCccCC--C--------CCEEEEEeCCHH----HHHHHHHHHHHCCceEeeeCCCCcC-----
Confidence 9999999987 455442 1 788999886531 2235788888889999875432221
Q ss_pred cCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 443 LGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 443 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
...+++|++++.++|++|+++++++|+++++.
T Consensus 372 ---------------------------~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 372 ---------------------------KNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ---------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 12689999999999999999999999988764
No 121
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.95 E-value=3e-27 Score=247.65 Aligned_cols=371 Identities=11% Similarity=0.056 Sum_probs=236.7
Q ss_pred hHHHHHHhhccCC--CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCC-CCC---ccchhhhhhHHHHHHHHHHHHHcC-
Q 010538 26 IDQIRATEFKRLE--NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGN-PHS---QSDISLATCDIVRAAREQVLDYFN- 98 (508)
Q Consensus 26 ~~~~r~~~f~~~~--~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~r~~la~~~~- 98 (508)
|+.+..+.|.... .+.+.|+.+....+++.+.++ +.......... .+. ....++.......++++.++++++
T Consensus 23 ~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 101 (435)
T 3piu_A 23 WQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESW-LAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAE 101 (435)
T ss_dssp HHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHH-HHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCcccCCCCeEEeccccccccHHHHHHH-HHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHH
Confidence 5555222554432 457788887766654444443 34332211000 000 000111111223567788888777
Q ss_pred -------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccc
Q 010538 99 -------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSE 171 (508)
Q Consensus 99 -------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~ 171 (508)
++++ +|++|+|+++|+.+++.++ .++|+.|+++...|+++..... ...|.+++.+|.+..+..
T Consensus 102 ~~~~~~~~~~~--~v~~~~gg~~a~~~~~~~l-~~~gd~vl~~~p~~~~~~~~~~--~~~g~~~~~~~~~~~~~~----- 171 (435)
T 3piu_A 102 IRGNKVTFDPN--HLVLTAGATSANETFIFCL-ADPGEAVLIPTPYYPGFDRDLK--WRTGVEIVPIHCTSSNGF----- 171 (435)
T ss_dssp HTTTSSCCCGG--GEEEEEHHHHHHHHHHHHH-CCTTCEEEEEESCCTTHHHHTT--TTTCCEEEEEECCGGGTS-----
T ss_pred hhCCCCCCCHH--HEEEcCChHHHHHHHHHHh-cCCCCeEEECCCccccHHHHHH--HhcCCEEEEeeCCCccCC-----
Confidence 6677 8999999999999999998 6789999999988887765432 146999999998764322
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
..|+++++ +++++....++++++|++++++||||.++|.+++.++++ +|+++|+++|+|++
T Consensus 172 --------~~d~~~l~--~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~Dea 232 (435)
T 3piu_A 172 --------QITETALE--EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS---------FVEDKGIHLISDEI 232 (435)
T ss_dssp --------CCCHHHHH--HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECT
T ss_pred --------cCCHHHHH--HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHH---------HHHHcCCEEEEecc
Confidence 11577777 554321111347899999999999999999876666655 44559999999999
Q ss_pred ccCC----CCCCCCC----C---------CCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEeccc
Q 010538 252 KGCV----TQPPDLS----K---------YPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 252 ~~~g----~~~~d~~----~---------~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~ 311 (508)
|+.+ ....++. + .+.++++.|+||++| .+| +|++++++ .+.+.+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~~----------- 300 (435)
T 3piu_A 233 YSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKMS----------- 300 (435)
T ss_dssp TGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHHHG-----------
T ss_pred ccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC-CCceeEEEEEeCCHHHHHHHHHHh-----------
Confidence 9752 2222221 1 123388999999998 446 79999954 4444333210
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCC
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTS 389 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~ 389 (508)
..++.+.....++.++++... +..+++.++++.++++++.+.|++. +++++.+..
T Consensus 301 ---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~- 357 (435)
T 3piu_A 301 ---------------SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-------GISCLNGNA- 357 (435)
T ss_dssp ---------------GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------TCEECCCCS-
T ss_pred ---------------hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCCe-
Confidence 012233444444444444211 1135777889999999999999886 577765543
Q ss_pred CcccCCCCceEEEEeeCCCCC-cc-CHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccc
Q 010538 390 EVSYHDTGSMVSFNLKRPDGS-WF-GYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDI 466 (508)
Q Consensus 390 ~~~~~~~~~~v~~~~~~~~~~-~~-~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 466 (508)
+.++++.+++.... .. +..++.+.|.+ +||.+++|..|...
T Consensus 358 -------g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----------------------------- 401 (435)
T 3piu_A 358 -------GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT----------------------------- 401 (435)
T ss_dssp -------SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-----------------------------
T ss_pred -------eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC-----------------------------
Confidence 68899998753110 00 12346666654 49999998755432
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 467 IHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 467 ~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.++++||+++.. |.++++.+++.|+++++.+
T Consensus 402 ----~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 402 ----EPGWFRVCFANL-PERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp ----STTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHH
Confidence 268999999876 9999999999999887654
No 122
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.94 E-value=9.7e-27 Score=235.74 Aligned_cols=334 Identities=13% Similarity=0.036 Sum_probs=215.0
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
..+|+|+++..+.+++.+.+++.+. .. . ...|. ......++++++|+++|.+ ++++++|+|+|+.+
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~-~~----~-~~~y~----~~~~~~~l~~~la~~~g~~----~~~~~~~gt~a~~~ 68 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQA-EV----G-DDVYG----EDPTINELERLAAETFGKE----AALFVPSGTMGNQV 68 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTC-CC----C-CGGGT----CCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcC-CC----C-CcccC----CChHHHHHHHHHHHHhCCc----eEEEecCcHHHHHH
Confidence 4579999999988888777765321 11 1 11121 1234667899999999984 56888888999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPA 198 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~ 198 (508)
++.++ .++|++|+++...|++.+.....+...|++++.+ .+.++.+ |+++++ +++.+....
T Consensus 69 ~~~~~-~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~---------------d~~~l~--~~i~~~~~~ 129 (347)
T 1jg8_A 69 SIMAH-TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAM---------------DPDDVR--KAIRPRNIH 129 (347)
T ss_dssp HHHHH-CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEE---------------CHHHHH--HHSCCSCTT
T ss_pred HHHHh-cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCcc---------------CHHHHH--HHhcccccc
Confidence 88887 6789999999988876543223345568999888 4333333 678888 666321001
Q ss_pred CCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---CCCCCCCC--CCCcEEEEe
Q 010538 199 GDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---TQPPDLSK--YPVDFVVMS 272 (508)
Q Consensus 199 ~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---~~~~d~~~--~~~D~~~~S 272 (508)
.++|++|++++++||| |.++|.+++.++++ +|+++|+++++|++|..+ ..+.+... .++|.+++|
T Consensus 130 ~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~---------~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s 200 (347)
T 1jg8_A 130 FPRTSLIAIENTHNRSGGRVVPLENIKEICT---------IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFC 200 (347)
T ss_dssp SCCEEEEEEESSBTTTTSBCCCHHHHHHHHH---------HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEE
T ss_pred ccCceEEEEeccccccCCccCcHHHHHHHHH---------HHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEe
Confidence 1378999999999999 99999765554444 333499999999987542 11223221 257888999
Q ss_pred ccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh--hHHHHHHHHHHHHHhcC
Q 010538 273 FYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF--LSIASIRHGFNLINSLT 350 (508)
Q Consensus 273 ~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~--~~~~~l~~al~~~~~~g 350 (508)
+||++++|.| |+++.++++++.+...... ..++... ...++...+++.+
T Consensus 201 ~sK~l~~~~G-~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~---- 251 (347)
T 1jg8_A 201 LSKGLCAPVG-SVVVGDRDFIERARKARKM------------------------LGGGMRQAGVLAAAGIIALTKM---- 251 (347)
T ss_dssp SSSTTCCSSC-EEEEECHHHHHHHHHHHHH------------------------HTCCCSSTHHHHHHHHHHHHHS----
T ss_pred cccccCCCce-EEEEcCHHHHHHHHHHHHH------------------------cCCchhHHHHHHHHHHHHHHHH----
Confidence 9999985533 3556677776655432100 0111111 1112222234321
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 351 VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 351 ~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
.+.+ ++..+.++++.+.|+++ ++++..++. .++++++.++.. ..+..++.+.|.++||.+++
T Consensus 252 ~~~~-~~~~~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~ 313 (347)
T 1jg8_A 252 VDRL-KEDHENARFLALKLKEI-------GYSVNPEDV-------KTNMVILRTDNL---KVNAHGFIEALRNSGVLANA 313 (347)
T ss_dssp STTH-HHHHHHHHHHHHHHHHH-------TCBCCGGGC-------CSSEEEEECTTS---SSCHHHHHHHHHHHTEECEE
T ss_pred HHHH-HHHHHHHHHHHHHHHhc-------CceeccCCC-------cceEEEEEcccc---cCCHHHHHHHHHHCCCEEec
Confidence 2222 22345678888888765 344322211 268888888631 12345688888889999876
Q ss_pred CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 431 GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 431 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
+. .+.+|++++.++|.+|++++++.|+++++
T Consensus 314 ~~---------------------------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 314 VS---------------------------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp EE---------------------------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CC---------------------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 31 46799999999999999999999998764
No 123
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.94 E-value=3.6e-26 Score=240.15 Aligned_cols=319 Identities=14% Similarity=0.045 Sum_probs=221.2
Q ss_pred hhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEE
Q 010538 78 ISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAF 156 (508)
Q Consensus 78 ~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~ 156 (508)
.+.......+++++++++++|++ + .+++++|+ +|+++++.++ .++|++|+++...|+++..+.+ .++..|++++
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~-~--~v~~~sG~-~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~ 182 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE-S--TLLMASGM-CASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 182 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS-E--EEEESCHH-HHHHHHHHHH-SCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred ccCCCChHHHHHHHHHHHHhCCC-c--EEEeCCHH-HHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 33334567888999999999986 4 57766665 9999999988 5789999999999988877655 4566799999
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc-eEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY-NLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
.+|.+ |+++++ +++ +++| ++|++++++||||.+.|+++|.++|++
T Consensus 183 ~v~~~--------------------d~~~l~--~ai------~~~tv~lV~le~p~NptG~v~dl~~I~~la~~------ 228 (445)
T 1qgn_A 183 VIDPA--------------------DVGALE--LAL------NQKKVNLFFTESPTNPFLRCVDIELVSKLCHE------ 228 (445)
T ss_dssp EECSS--------------------CHHHHH--HHH------HHSCEEEEEEESSCTTTCCCCCHHHHHHHHHH------
T ss_pred EeCCC--------------------CHHHHH--HHh------ccCCCCEEEEeCCCCCCCcccCHHHHHHHHHH------
Confidence 99864 245566 333 3567 999999999999999999999999998
Q ss_pred cCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc---ceEEEEechhHhhhccccccCceEEecccc
Q 010538 236 ISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 236 ~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+|+++++|++|+.+... +...+++|+++.|+||++| +.| .|++++++++++.+.+..
T Consensus 229 ------~g~~livD~a~~~~~~~-~~~~~g~Div~~S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~~------------ 288 (445)
T 1qgn_A 229 ------KGALVCIDGTFATPLNQ-KALALGADLVLHSATKFLG-GHNDVLAGCISGPLKLVSEIRNLH------------ 288 (445)
T ss_dssp ------TTCEEEEECTTTCTTTC-CTTTTTCSEEEECTTTTTT-CSSSCCCEEEEECHHHHHHHHHHH------------
T ss_pred ------cCCEEEEECCCcccccC-CccccCCEEEEECCccccc-ccccceEEEEEECHHHHHHHHHHH------------
Confidence 99999999999877543 2335689999999999999 666 899999988876654321
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE-EEecCCCCCc
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVC-TIYGTYTSEV 391 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~-~~~~~~~~~~ 391 (508)
....++++....+.+..+++. +....++..+.++++.+.|++.+ ++ +++.|.-..
T Consensus 289 ------------~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p------~v~~v~~p~l~~- 344 (445)
T 1qgn_A 289 ------------HILGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAHP------KVRHVYYPGLQS- 344 (445)
T ss_dssp ------------HHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTSSS-
T ss_pred ------------HHhCCCCCHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCC------CceEEECCCCCC-
Confidence 011233444333333334443 33444555666888888998873 56 555542110
Q ss_pred cc---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH--HhhcCCChhhhhhhhhcCCcc
Q 010538 392 SY---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC--AKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 392 ~~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~--~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.+ ...+++++|.+++.. . ....+...|+..++.++.|..|+.... ...-.--+++.+.++|.
T Consensus 345 ~p~~~~~~~~~~g~g~ivsf~l~~~~-~--~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~---- 417 (445)
T 1qgn_A 345 HPEHHIAKKQMTGFGGAVSFEVDGDL-L--TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGI---- 417 (445)
T ss_dssp STTHHHHHHHCSCCCSEEEEEESSCH-H--HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTC----
T ss_pred CchHHHHHHhccCCCcEEEEEECCCH-H--HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCC----
Confidence 00 014899999997521 0 012244445445888999998875210 00000113455666765
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++.||+|++ .||++.+++.|++.++
T Consensus 418 ----------~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 418 ----------MDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp ----------CSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 2689999999 3689999988887664
No 124
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.94 E-value=2.2e-25 Score=228.26 Aligned_cols=298 Identities=13% Similarity=0.065 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHc-CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCcc
Q 010538 86 VRAAREQVLDYF-NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAV 164 (508)
Q Consensus 86 ~~~~r~~la~~~-~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~ 164 (508)
..++++.+++++ +++++ +|++|+|+|+|+.+++.++ .++|++|+++...|+++... ++..|++++.+|++...
T Consensus 65 ~~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~l-~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~ 138 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPE--QILQTNGATGANLLVLYSL-IEPGDHVISLYPTYQQLYDI---PKSLGAEVDLWQIEEEN 138 (375)
T ss_dssp CHHHHHHHHTTSSSCCGG--GEEEESHHHHHHHHHHHHH-CCTTCEEEEEESSCTHHHHH---HHHTTCEEEEEEEEGGG
T ss_pred hHHHHHHHHHHhccCChh--hEEEcCChHHHHHHHHHHh-cCCCCEEEEeCCCchhHHHH---HHHcCCEEEEEeccccC
Confidence 457789999988 57777 8999999999999999998 68899999998877766544 45579999999986432
Q ss_pred CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCccccccCCCCC
Q 010538 165 DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 165 ~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
.. ..|+++++ +++ ++++++|++++++||||.++| +++|.++|++
T Consensus 139 ~~-------------~~d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~------------ 185 (375)
T 3op7_A 139 GW-------------LPDLEKLR--QLI------RPTTKMICINNANNPTGAVMDRTYLEELVEIASE------------ 185 (375)
T ss_dssp TT-------------EECHHHHH--HHC------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHT------------
T ss_pred CC-------------CCCHHHHH--Hhh------ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHH------------
Confidence 21 12688888 555 467899999999999999999 7777777776
Q ss_pred CCeEEEEeccccCCCCC-C-C-CCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhh
Q 010538 242 GRWMVLIDAAKGCVTQP-P-D-LSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~-~-d-~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++|+|++|+..... . . ....+.++++.|++|.+| ++| +|++++++++++.+......
T Consensus 186 ~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~v~~~~~l~~~~~~~~~~-------------- 250 (375)
T 3op7_A 186 VGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYS-LPGIRIGWVAANHQVTDILRDYRDY-------------- 250 (375)
T ss_dssp TTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSS-CGGGCCEEEECCHHHHHHHTTTGGG--------------
T ss_pred cCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcC-CcccceEEEEeCHHHHHHHHHHHhh--------------
Confidence 99999999998764332 1 1 112356689999999998 446 69999988888776644211
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
...+.+....+++..+++.... .+++.++++.++++++.+.|++. +++.+..+..
T Consensus 251 ----------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~-------- 305 (375)
T 3op7_A 251 ----------TMICAGVFDDLVAQLALAHYQE-ILERNRHILEENLAILDQWIEEE------PLVSYIRPAV-------- 305 (375)
T ss_dssp ----------TTSCCCHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHC------TTEEECCCSS--------
T ss_pred ----------hccCCCcHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCC--------
Confidence 1123344455555556664333 36777888899999999999886 3687776543
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+.++++.++.. .+..++.+.| +++||.+++|..|.. ++++
T Consensus 306 ~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~~g~~~~~-----------------------------------~~~i 346 (375)
T 3op7_A 306 VSTSFVKIAVD----MPMEDFCLQLLQEHGVLLVPGNRFER-----------------------------------DGYV 346 (375)
T ss_dssp SSCEEEEECCS----SCHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEE
T ss_pred eEEEeEEcCCC----CCHHHHHHHHHHhCCEEEeChhhhCC-----------------------------------CCeE
Confidence 55666676532 2334566665 789999998764321 5789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|++++. +.++++.+++.|.++++.+.
T Consensus 347 Ri~~~~--~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 347 RLGFAC--EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp EECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 999885 45999999999998876543
No 125
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=3.5e-26 Score=239.90 Aligned_cols=362 Identities=11% Similarity=-0.001 Sum_probs=227.3
Q ss_pred CCCe-eeeCCCCCCCCHHHHHHHHHHhhccccCC-------CC-CccchhhhhhHHHHHHHHHHHHHc------CCCCCC
Q 010538 39 NGTV-YLDHAGATLYSELQMEAIFRDFTTNVYGN-------PH-SQSDISLATCDIVRAAREQVLDYF------NASMKD 103 (508)
Q Consensus 39 ~~~i-yld~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~r~~la~~~------~~~~~~ 103 (508)
++.| +|+.+.... ++.+.+++.+ .+.+.+.+ +. ..+..++......+++|+.+|+++ +++++
T Consensus 31 ~~~i~~l~~g~p~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~- 107 (444)
T 3if2_A 31 DQPVNMLGGGNPAK-IDAVNELFLE-TYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE- 107 (444)
T ss_dssp SSCCEECSCCCCCC-CHHHHHHHHH-HHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-
T ss_pred chhhhccCCCCCCc-ccchHHHHHH-HHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-
Confidence 6788 999876655 5555554433 22233334 32 111112222223566778888877 56777
Q ss_pred ceEEEcCChHHHHHHHHhhcCCCCCC--------------eEEEe-cccccchHHHHH---HHHhcCCeEEEEccCC-cc
Q 010538 104 YKCIFTSGATAALKLVGEAFPWSHQS--------------SYMYT-MENHNSVLGIRE---YALSQGAAAFAIDVEE-AV 164 (508)
Q Consensus 104 ~~i~~t~g~t~al~~~~~~l~~~~g~--------------~vl~~-~~~h~s~~~~~~---~~~~~G~~v~~v~~~~-~~ 164 (508)
+|++|+|+|+|+++++.++ ..+|+ +|+++ ..+|+++..... .+...|..+..++.+. ++
T Consensus 108 -~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 185 (444)
T 3if2_A 108 -NIALTNGSQNAFFYLFNLF-GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEG 185 (444)
T ss_dssp -GEEEESSHHHHHHHHHHHS-SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEE
T ss_pred -HEEEecCcHHHHHHHHHHH-hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccC
Confidence 8999999999999999998 56666 67765 667766654221 2234578888888764 22
Q ss_pred ----CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 165 ----DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 165 ----~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
.+ |+++++ +++.+ .++++++|++++++||||.++|.+++.++++ +|+
T Consensus 186 ~~~~~~---------------d~~~l~--~~l~~---~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~---------~a~ 236 (444)
T 3if2_A 186 FFKYRV---------------DFEALE--NLPAL---KEGRIGAICCSRPTNPTGNVLTDEEMAHLAE---------IAK 236 (444)
T ss_dssp EEEEEC---------------CHHHHH--TCHHH---HTTCEEEEEEESSCTTTCCCCCHHHHHHHHH---------HHH
T ss_pred ccccCC---------------CHHHHH--HHHHh---cCCCceEEEeCCCCCCCCCcCCHHHHHHHHH---------HHH
Confidence 23 688888 54210 2568999999999999999999554444433 333
Q ss_pred CCCeEEEEeccccCCCCC-----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccch
Q 010538 241 KGRWMVLIDAAKGCVTQP-----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~-----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
++|+++|+|++|+.+... ......+.++++.|+||+ +.| | +|+++.++++++.+......
T Consensus 237 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~-G~r~G~~~~~~~l~~~~~~~~~~----------- 303 (444)
T 3if2_A 237 RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLP-GMRTGIIVADAKVIEAVSAMNAV----------- 303 (444)
T ss_dssp HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCG-GGCCEEEECCHHHHHHHHHHHHH-----------
T ss_pred HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cCC-CCceEEEEECHHHHHHHHHHHHh-----------
Confidence 499999999999853222 222234678999999997 424 4 89999988887766543110
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHh-cChH-HHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCC
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS-LTVP-AICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSE 390 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~-~g~~-~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~ 390 (508)
...+.+.....++...++.... .... .+.+++.++++++.+.|.+ ++. -++.+..+..
T Consensus 304 -------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~-- 364 (444)
T 3if2_A 304 -------------VNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGD----YPLMIHKPEG-- 364 (444)
T ss_dssp -------------HHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS----SSEEEECCCB--
T ss_pred -------------ccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCceEecCCc--
Confidence 0112223333333333331100 0012 2555667777777777755 210 1466665543
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGK 470 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 470 (508)
+.++++.++... ++..++.+.|.++||.+++|..|..+... .| ...
T Consensus 365 ------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~~~~~~------~~-------------------~~~ 410 (444)
T 3if2_A 365 ------AIFLWLWFKDLP---ISTLDLYERLKAKGTLIVPSEYFFPGVDV------SD-------------------YQH 410 (444)
T ss_dssp ------SSEEEEEETTCS---SCHHHHHHHHHHTTEECEEGGGSCTTCCC------TT-------------------CSG
T ss_pred ------cEEEEEEcCCCC---CCHHHHHHHHHHCCeEEecchhhcCCCCC------cc-------------------ccc
Confidence 788888886421 34456888899999999999887653100 00 001
Q ss_pred CCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 471 PTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 471 ~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
..+++|||++. |.++++++++.|.++++.+
T Consensus 411 ~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 411 AHECIRMSIAA--DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp GGSEEEEESSS--CHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeC--CHHHHHHHHHHHHHHHHHH
Confidence 24789999997 9999999999999987654
No 126
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.94 E-value=5.9e-26 Score=240.66 Aligned_cols=344 Identities=13% Similarity=0.037 Sum_probs=222.2
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhh-HHHHHHHHHHHHHcCCCCCCc-eEEEcCChHHHHHHHHhh
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATC-DIVRAAREQVLDYFNASMKDY-KCIFTSGATAALKLVGEA 122 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~r~~la~~~~~~~~~~-~i~~t~g~t~al~~~~~~ 122 (508)
++.+++++.|++++...+ .+.+ ++|++.+..+.... .+.+.+++++++++|++++++ ..++++|+|+|+.+++.+
T Consensus 61 as~n~~~~~V~eA~~~~l-~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCL-NNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGG-GTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH-cCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 577778999999986644 3444 67877766665444 344478899999999987532 135666889999999999
Q ss_pred cCCCCCCeEEEecccccchHH--HH---HHHHhcCCeEE--EEccCC-ccCccccccccccccccccchhhhhcCCCCCC
Q 010538 123 FPWSHQSSYMYTMENHNSVLG--IR---EYALSQGAAAF--AIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 123 l~~~~g~~vl~~~~~h~s~~~--~~---~~~~~~G~~v~--~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+ .++||+|+++..+|.++.. .. ..+...|..+. .++++. .+.+ |+++++ +++.
T Consensus 140 l-~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~i---------------D~d~le--~~l~- 200 (490)
T 2a7v_A 140 L-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI---------------DYNQLA--LTAR- 200 (490)
T ss_dssp H-CCSCEECCC-------------------------------CCBCTTTCSB---------------CHHHHH--HHHH-
T ss_pred H-cCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCc---------------CHHHHH--HHHh-
Confidence 9 7899999999888865432 10 11122344333 344442 3444 688888 5442
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-----CCCCCCCCCCCcEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV-----TQPPDLSKYPVDFV 269 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g-----~~~~d~~~~~~D~~ 269 (508)
.+++++|++...+| |...|+++|.++|++ +|+++++|++|+.| ..+.++. ++|++
T Consensus 201 ----~~~~klIi~~~s~~--~~~~dl~~i~~ia~~------------~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv 260 (490)
T 2a7v_A 201 ----LFRPRLIIAGTSAY--ARLIDYARMREVCDE------------VKAHLLADMAHISGLVAAKVIPSPFK--HADIV 260 (490)
T ss_dssp ----HHCCSEEEECCSSC--CSCCCHHHHHHHHHH------------TTCEEEEECGGGHHHHHTTSSCCGGG--TCSEE
T ss_pred ----hcCCcEEEEcCCCC--CCcccHHHHHHHHHH------------cCCEEEEccccccccccCCcCCCCCC--CCCEE
Confidence 13568888776555 467899999999998 99999999999753 2333332 68999
Q ss_pred EEeccccccCCCcceEEEEechhH---------------hhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 270 VMSFYKIFGYPTGLGALIMRNDAA---------------KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~~~~---------------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
++|+||+++||.| |+++.+++.+ ++++..++ ....|+++..
T Consensus 261 ~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-----------------------~g~qggp~~~ 316 (490)
T 2a7v_A 261 TTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVF-----------------------PSLQGGPHNH 316 (490)
T ss_dssp EEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHT-----------------------TTTCCSCCHH
T ss_pred EECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHHHHhc-----------------------ccCCCCchHH
Confidence 9999998877987 9999987531 11111111 1123567888
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
.++++.+|+........++..+++.+++++|.+.|.+. |+++..+... .+++++.+.... ++.
T Consensus 317 ~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~-------G~~v~~~~t~-------t~lv~vdl~~~g---~~~ 379 (490)
T 2a7v_A 317 AIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-------GYSLVSGGTD-------NHLVLVDLRPKG---LDG 379 (490)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECTTTT---CCH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-------CcEEecCCCC-------CeEEEEEeCCCC---CCH
Confidence 88998888887654446888999999999999999986 6888754322 688888875421 344
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC----CCCCHHHHHH
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG----YMSTFEDAKV 490 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~----~~~t~eev~~ 490 (508)
.++.+.|++.||.+..+..+.... ...++.||++.. .-.+++|+++
T Consensus 380 ~~~~~~L~~~GI~v~~~~~p~d~~------------------------------p~~~~~iRig~~a~t~~g~~~~d~~~ 429 (490)
T 2a7v_A 380 ARAERVLELVSITANKNTCPGDRS------------------------------AITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp HHHHHHHHHTTEECEEECCTTCCC------------------------------SSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCeEEecCccCCCCC------------------------------CCCCCceEecccccccCCCCHHHHHH
Confidence 568899999999998654322110 112578999764 3468999999
Q ss_pred HHHhhhhhhhh
Q 010538 491 NRCSSFDFVNF 501 (508)
Q Consensus 491 l~~~~~~~~~~ 501 (508)
++++|.+.+.-
T Consensus 430 ~~~~i~~~l~~ 440 (490)
T 2a7v_A 430 VVDFIDEGVNI 440 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887753
No 127
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.94 E-value=2.8e-26 Score=238.07 Aligned_cols=349 Identities=15% Similarity=0.084 Sum_probs=235.3
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhh-hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLA-TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
.+.+-|.. +..++++.+++++.+.+ .+.+ ++|.+.+..+.. ...+.+.+++.+++++|++++ +|++++| |+|
T Consensus 25 ~~~i~l~~-~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~~~sG-t~a 99 (417)
T 3n0l_A 25 CEGLEMIA-SENFTLPEVMEVMGSIL-TNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA--NVQPNSG-SQA 99 (417)
T ss_dssp HHSEECCT-TCCCCCHHHHHHHTBGG-GGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHH
T ss_pred hcCeeeec-ccCCCCHHHHHHHhhhh-hccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc--ceEeccH-HHH
Confidence 34566654 34556888888875533 2222 334333332222 334455688899999999877 7888777 799
Q ss_pred HHHHHhhcCCCCCCeEEEecccccchHHHHHHHHh--cCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALS--QGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~--~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+.+++.++ .++|++|++....|+++......+.. .+..+..++.+.++.+ |+++++ +++.
T Consensus 100 ~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~ 161 (417)
T 3n0l_A 100 NQGVYAAL-INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRI---------------DYEKVR--EIAK 161 (417)
T ss_dssp HHHHHHHH-SCTTCEEEEECC----------------CCSEEEEECCCTTSSC---------------CHHHHH--HHHH
T ss_pred HHHHHHHh-cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCc---------------CHHHHH--HHHH
Confidence 99999998 78899999999888876542222222 3455666666644444 678887 5442
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCcE
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDF 268 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~ 268 (508)
.+++++|++++++| |.+.|+++|.++|++ +|+++|+|++|+.|.. +.++. ++|+
T Consensus 162 -----~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~~~~~~~~~~--~~di 220 (417)
T 3n0l_A 162 -----KEKPKLIVCGASAY--ARVIDFAKFREIADE------------IGAYLFADIAHIAGLVVAGEHPSPFP--YAHV 220 (417)
T ss_dssp -----HHCCSEEEECCSSC--CSCCCHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCCTT--TCSE
T ss_pred -----hcCCeEEEECCccc--CccCCHHHHHHHHHH------------cCCEEEEECccchhhhhcccCCCccc--cceE
Confidence 14678898887664 999999999999998 9999999999865433 43443 5799
Q ss_pred EEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 269 VVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++|+||++++|.| |+++.+ +++.+.+.+....+ ..++++...++++..++....
T Consensus 221 ~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~aa~~~a~~~~~ 276 (417)
T 3n0l_A 221 VSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPG-----------------------IQGGPLMHVIAAKAVGFKFNL 276 (417)
T ss_dssp EEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTT-----------------------TCSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCc-----------------------ccCCcHHHHHHHHHHHHHHHH
Confidence 99999998877875 999998 57766655432211 134667777788877777654
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
+.+++.+.+++.++++++.+.|.+. ++++..+... .+++++.+.... ++...+.+.|.++||.
T Consensus 277 ~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~ 339 (417)
T 3n0l_A 277 SDEWKVYAKQVRTNAQVLANVLMDR-------KFKLVSDGTD-------NHLVLMSFLDRE---FSGKDADLALGNAGIT 339 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECTTSS---SCHHHHHHHHHHTTEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhC-------CceeccCCCC-------ceEEEEEcccCC---CCHHHHHHHHHHcCeE
Confidence 4457889999999999999999884 6777653221 677877775321 3445688999999999
Q ss_pred eccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 428 LRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 428 v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
++.+....... .....+.+|+++... .|++|++++++.|.+.++.
T Consensus 340 v~~~~~~~~~~-----------------------------~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 340 ANKNTVPGEIR-----------------------------SPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp CEECCCTTCCS-----------------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred EeccccCCCCc-----------------------------ccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 98754221110 001246799998644 4699999999999988754
No 128
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.94 E-value=1.7e-26 Score=241.31 Aligned_cols=305 Identities=11% Similarity=0.075 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHcC--------CCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 86 VRAAREQVLDYFN--------ASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 86 ~~~~r~~la~~~~--------~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
..++++.++++++ ++++ +|++|+|+++++.+++.++ ..+|+.|+++...|+++.... ....|++++.
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~--~i~~~~G~~~ai~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~--~~~~g~~~~~ 159 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPE--RVVMAGGATGANETIIFCL-ADPGDAFLVPSPYYPAFNRDL--RWRTGVQLIP 159 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTT--SCEEEEHHHHHHHHHHHHH-CCTTCEEEEESSCCTTHHHHT--TTTTCCEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChh--hEEEccChHHHHHHHHHHh-CCCCCeEEEccCCCcchHHHH--HHhcCCEEEE
Confidence 3456677777765 6677 8999999999999999998 578899999998888765422 2246899999
Q ss_pred EccCCcc--CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC---HHHHHHHHcCCcc
Q 010538 158 IDVEEAV--DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN---LDLINIMKKNPER 232 (508)
Q Consensus 158 v~~~~~~--~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~---i~~i~~l~~~~~~ 232 (508)
+|.+.+. .+ |+++++ +++++.....+++++|++++++||||.++| +++|.++|++
T Consensus 160 v~~~~~~~~~~---------------d~~~l~--~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~--- 219 (428)
T 1iay_A 160 IHCESSNNFKI---------------TSKAVK--EAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQ--- 219 (428)
T ss_dssp ECCCTTTTTCC---------------CHHHHH--HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHT---
T ss_pred eecCCccCCcC---------------CHHHHH--HHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHH---
Confidence 9986421 23 567776 444210001347899999999999999999 6666666765
Q ss_pred ccccCCCCCCCeEEEEeccccCCC----CCCCCCC---------CCCc--EEEEeccccccCCCc--ceEEEE-echhHh
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK---------YPVD--FVVMSFYKIFGYPTG--LGALIM-RNDAAK 294 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~---------~~~D--~~~~S~~K~~g~P~G--~G~l~~-~~~~~~ 294 (508)
+|+++|+|++|+... ...++.. ++.| +++.|+||++| ++| +|++++ ++++++
T Consensus 220 ---------~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~ 289 (428)
T 1iay_A 220 ---------HNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVN 289 (428)
T ss_dssp ---------TTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHH
T ss_pred ---------CCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHH
Confidence 999999999998522 1122211 1257 88999999998 557 699999 566665
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
.+.... ...+.+.....++.++++... +..++++++++.++++++.+.|+++
T Consensus 290 ~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 343 (428)
T 1iay_A 290 CARKMS--------------------------SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV 343 (428)
T ss_dssp HHHHHH--------------------------TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH--------------------------hcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544220 012334444555555554311 1135778899999999999999886
Q ss_pred cCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-Cc-cCHHHHHHHHhhC-CCeeccCCCCCchHHHhhcCCChhh
Q 010538 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-SW-FGYREVEKLASLS-GIQLRTGCFCNPGACAKYLGLSHSD 449 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-~~~~~l~~~L~~~-gI~v~~g~~~~~~~~~~~~~~~~s~ 449 (508)
+++++.+.. +.++++++++... .. .+..++.+.|.++ ||.+++|..|...
T Consensus 344 -------g~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~------------ 396 (428)
T 1iay_A 344 -------GIKCLKNNA--------GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ------------ 396 (428)
T ss_dssp -------TCCBCCCSS--------SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS------------
T ss_pred -------CCcccCCCe--------eEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC------------
Confidence 455544322 7888999865210 00 0123467777665 9999987644221
Q ss_pred hhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 450 LLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++||+++ .+|.+++++++++|+++++
T Consensus 397 ---------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 397 ---------------------EPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp ---------------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence 1578999999 6899999999999998765
No 129
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=1.1e-25 Score=230.31 Aligned_cols=323 Identities=13% Similarity=0.074 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
....++++.++++++.+ ++++++|+|+|+.+++.++..++|++|+++...|+++... ++..|.+++.+|.+.+
T Consensus 38 ~~~~~l~~~la~~~~~~----~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 38 AELEKFEKRFAALHNAP----HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA---IVQAGATPVLVDSENG 110 (374)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH---HHHTTCEEEEECBCTT
T ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEecCCC
Confidence 45778899999999986 5788999999999999998667899999999888877654 4557999999998755
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
..+ |+++++ +++ ++++++|+ ++|+||.+.|+++|.++|++ +|
T Consensus 111 ~~~---------------d~~~l~--~~~------~~~~~~v~---~~n~~G~~~~~~~i~~~~~~------------~~ 152 (374)
T 3uwc_A 111 YVI---------------DPEKIE--AAI------TDKTKAIM---PVHYTGNIADMPALAKIAKK------------HN 152 (374)
T ss_dssp SSB---------------CGGGTG--GGC------CTTEEEEC---CBCGGGCCCCHHHHHHHHHH------------TT
T ss_pred CCc---------------CHHHHH--HhC------CCCceEEE---EeCCcCCcCCHHHHHHHHHH------------cC
Confidence 544 577888 554 45778877 77899999999999999998 99
Q ss_pred eEEEEeccccCCCCCCCCCCCC--CcEEEEecc--ccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhh
Q 010538 244 WMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--KIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+++|+|++|+.|.. ++....+ .|++++|+| |+++++...|+++.++ ++.+.+.+...++... .|
T Consensus 153 ~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~--- 221 (374)
T 3uwc_A 153 LHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RD--- 221 (374)
T ss_dssp CEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TT---
T ss_pred CEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cC---
Confidence 99999999998764 3433333 699999988 9998323367777765 4555455443322210 00
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcccCCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (508)
.....+.+. .+..+.+++.+....+++.+.++..++.+++.+.|.++ ++ +++...... ...
T Consensus 222 ------~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~-----~~~ 283 (374)
T 3uwc_A 222 ------VCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDL------SEFIDVPVRREG-----VYH 283 (374)
T ss_dssp ------EESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGG------TTTEECCCCCTT-----EEC
T ss_pred ------ccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCeEEeccCCCC-----Cce
Confidence 001111222 22334445555455567889999999999999999887 35 666433221 112
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC----CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF----CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
.++.+.+... +..++.+.|.++||.++++.. |.+.. ..+|+....+..+- ....+
T Consensus 284 ~~~~~~~~~~-----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------~~~~~ 342 (374)
T 3uwc_A 284 VFHIYVLRVK-----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAA--KSLGYQQGDFPMAE--------------KHGEA 342 (374)
T ss_dssp CCSSEEEEET-----THHHHHHHHHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSCHHHH--------------HHHHH
T ss_pred eeEEEEEEcC-----CHHHHHHHHHHCCCccccCCCCccccChhh--hhcCCccCCCccHH--------------HHHhC
Confidence 3233333322 234588999999999998751 11110 01111000000000 01137
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+|++++.++|++||+++++.|+++++.
T Consensus 343 ~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 343 VITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998764
No 130
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.94 E-value=1.3e-25 Score=230.15 Aligned_cols=320 Identities=14% Similarity=0.104 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE- 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~- 162 (508)
...+++++.+++++|.+ ++++++|+|+|+++++.++..++|++|+++..+|+++...++ ..|++++.++.+.
T Consensus 36 ~~~~~l~~~la~~~~~~----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~ 108 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN----YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVS---YTGAKPIFVEPDIR 108 (373)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHH---HHSCEEEEECEETT
T ss_pred chHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEecccc
Confidence 45788999999999985 589999999999999999866889999999999998766544 4599999999873
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
...+ |+++++ +++ ++++++|+ ++|+||...|+++|.++|++ +
T Consensus 109 ~~~~---------------d~~~l~--~~l------~~~~~~v~---~~n~~G~~~~l~~i~~l~~~------------~ 150 (373)
T 3frk_A 109 TYNI---------------DPSLIE--SAI------TEKTKAII---AVHLYGQPADMDEIKRIAKK------------Y 150 (373)
T ss_dssp TTEE---------------CGGGTG--GGC------CTTEEEEE---EECCTTCCCCHHHHHHHHHH------------H
T ss_pred ccCc---------------CHHHHH--Hhc------CCCCeEEE---EECCCcCcccHHHHHHHHHH------------c
Confidence 3444 577888 554 45788887 56799999999999999998 8
Q ss_pred CeEEEEeccccCCCCCCCCCCCC--CcEEEEecc--ccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--KIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|+++|+|++|+.|.. .+....+ .|++++|++ |+++++...|+++.+++ +.+.+.+...++... .+
T Consensus 151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~-------~~-- 220 (373)
T 3frk_A 151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEK-------KY-- 220 (373)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSB-------TT--
T ss_pred CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCccc-------CC--
Confidence 999999999998876 5555555 799999955 99983233577777654 555555544333210 00
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.....|. ++ .+..+.+++.+....+++.+.++.+++++++.+.|+++ ++.+...... ...
T Consensus 221 ------~~~~~g~-~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~-----~~~ 280 (373)
T 3frk_A 221 ------HHIYKGF-NS-RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINNP-------NVIIPVEADY-----AKH 280 (373)
T ss_dssp ------BCCSCCC-BC-CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT-------TEECCCCCTT-----EEC
T ss_pred ------ccccccc-cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------ceEeccCCCC-----Cce
Confidence 0011121 11 12233344444444467888999999999999999887 3555432211 113
Q ss_pred ceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC----CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 398 SMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF----CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 398 ~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~----~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
.+..|.+... +...+.+.|.++||.++.+.. |.+.. ..++.....+..+ .....+
T Consensus 281 ~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~ 339 (373)
T 3frk_A 281 VWYTFVIRSE-----KRDELQKYLNNNGIGTLIHYPIPIHLQQAY--KDLGFKTGNFPIA--------------EKIANE 339 (373)
T ss_dssp CCSSEEEEES-----SHHHHHHHHHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSSHHH--------------HHHHHH
T ss_pred eeEEEEEEeC-----CHHHHHHHHHHCCCCcccCcCCccccChHH--HhcCCCCCCCHHH--------------HHHHhC
Confidence 3333443322 234589999999999997642 21111 0111110000000 001237
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.+|++++.++|++||+++++.+++..
T Consensus 340 ~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 340 ILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999999988753
No 131
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.94 E-value=2.7e-25 Score=232.28 Aligned_cols=312 Identities=13% Similarity=0.080 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHcCCCC---------CCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCe
Q 010538 84 DIVRAAREQVLDYFNASM---------KDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA 154 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~---------~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~ 154 (508)
++.+++.+.+++..|.+. + +|++|+|+++|+.+++.++ ..+|++|++....|+++. ..++..|.+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~---~~~~~~g~~ 155 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQM--DLCVTSGSQQGLCKVFEMI-INPGDNVLLDEPAYSGTL---QSLHPLGCN 155 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCE--EEEEESSHHHHHHHHHHHH-CCTTCEEEEESSCCHHHH---HHHGGGTCE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcC--cEEEeCcHHHHHHHHHHHh-CCCCCEEEEeCCCcHHHH---HHHHHcCCE
Confidence 455566666666678764 4 8999999999999999998 678899998886666544 445567999
Q ss_pred EEEEccCCccCccccccccccccccccchhhhhcCCCCCCCC------CCCCCceEEEE-eCCCCCCccccCHHHHHHHH
Q 010538 155 AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERD------PAGDAYNLFAF-PSECNFSGSRFNLDLINIMK 227 (508)
Q Consensus 155 v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~------~~~~~t~lv~~-~~~~n~tG~~~~i~~i~~l~ 227 (508)
++.+|.+.++ + |+++++ +++++.. ...+++++|++ ++++||||.++|.+++.+++
T Consensus 156 ~~~v~~~~~~-~---------------d~~~l~--~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~ 217 (425)
T 2r2n_A 156 IINVASDESG-I---------------VPDSLR--DILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIY 217 (425)
T ss_dssp EEEECEETTE-E---------------CHHHHH--HHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHH
T ss_pred EEEeCcCCCC-C---------------CHHHHH--HHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHH
Confidence 9999986533 3 567777 5553110 01246788866 79999999999988444444
Q ss_pred cCCccccccCCCCCCCeEEEEeccccC----CCCCCCCCCC---CCcEEEEeccccccCCCc--ceEEEEechhHhhhcc
Q 010538 228 KNPERILEISPFSKGRWMVLIDAAKGC----VTQPPDLSKY---PVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKN 298 (508)
Q Consensus 228 ~~~~~~~~~~~~~~~g~~vivD~a~~~----g~~~~d~~~~---~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~ 298 (508)
+ +|+++|++||+|++|+. |..+.++..+ +.++++.|+||+++ | | +|++++++++++.+..
T Consensus 218 ~---------~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~-GlRiG~~~~~~~l~~~l~~ 286 (425)
T 2r2n_A 218 E---------LARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S-GLRIGFLTGPKPLIERVIL 286 (425)
T ss_dssp H---------HHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S-TTCCEEEEEEHHHHHHHHH
T ss_pred H---------HHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C-ccceEEEecCHHHHHHHHH
Confidence 4 33449999999999973 3333444332 45699999999998 7 6 7999999988776654
Q ss_pred ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHHHhcccC
Q 010538 299 TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS----LTVPAICRHIASLGMYVRKVLLSLRH 374 (508)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~----~g~~~i~~~~~~l~~~l~~~L~~l~~ 374 (508)
... ...++.+.....++.++++.+.+ ..++.+++++++.++++.+.|++..
T Consensus 287 ~~~------------------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 341 (425)
T 2r2n_A 287 HIQ------------------------VSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL- 341 (425)
T ss_dssp HHH------------------------TTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHH------------------------HhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 311 11234566666666666664321 2357778888999999999998731
Q ss_pred CCCCceE-EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 375 ENGADVC-TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 375 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
+++ .+..+.. +.++++++++.... ...+.+.|.++||.+++|..|..+.
T Consensus 342 ----~~~~~~~~p~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~gv~v~pg~~f~~~~--------------- 391 (425)
T 2r2n_A 342 ----TGLAEWHVPAA--------GMFLWIKVKGINDV---KELIEEKAVKMGVLMLPGNAFYVDS--------------- 391 (425)
T ss_dssp ----SSSEEECCCSB--------SSEEEEEETTCSCC---HHHHHTHHHHTTEECEEGGGGSSST---------------
T ss_pred ----CCCeEEeCCCc--------eEEEEEEeCCCCCH---HHHHHHHHHHCCcEEechhhhcCCC---------------
Confidence 244 4444433 78899998753111 1225778889999999987654321
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
....+++|||++. .+.++++++++.|+++++.
T Consensus 392 ---------------~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 392 ---------------SAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp ---------------TSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 0125789999984 5999999999999987753
No 132
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=2.3e-26 Score=238.22 Aligned_cols=311 Identities=13% Similarity=0.014 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
.....+++++.+|+++|++ + .+++++| |+|+++++. + .++|++|+++..+|++...+.. .++..|++++.+|.
T Consensus 53 ~~~~~~~lr~~la~~~g~~-~--~i~~~sG-t~a~~~al~-~-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 126 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ-Y--GLAFSSG-SATTATILQ-S-LPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND 126 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHH-T-SCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS
T ss_pred CChhHHHHHHHHHHHhCCC-c--EEEECCh-HHHHHHHHH-H-cCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence 3456888999999999987 3 4666555 899999999 6 6789999999989987666543 45667999999987
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ | ++++ +++ +++|++|++++++||||.++|+++|.++|++
T Consensus 127 ~--------------------d-~~l~--~~i------~~~t~lv~~~~~~nptG~~~~l~~i~~la~~----------- 166 (393)
T 1n8p_A 127 L--------------------L-NDLP--QLI------KENTKLVWIETPTNPTLKVTDIQKVADLIKK----------- 166 (393)
T ss_dssp H--------------------H-HHHH--HHS------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHH-----------
T ss_pred C--------------------h-HHHH--Hhc------ccCceEEEEECCCCCcceecCHHHHHHHHHH-----------
Confidence 4 2 3345 333 4578999999999999999999999999997
Q ss_pred CC----CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--c-eEEEEe-chhHhhhccccccCceEEecccc
Q 010538 241 KG----RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--L-GALIMR-NDAAKLLKNTYFSGGTVAASIAD 312 (508)
Q Consensus 241 ~~----g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~ 312 (508)
+ |+++|+|++|+.+... ++..+++|+++.|+||++| |.| + |+++++ +++++.+.+...
T Consensus 167 -~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~~----------- 232 (393)
T 1n8p_A 167 -HAAGQDVILVVDNTFLSPYIS-NPLNFGADIVVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQN----------- 232 (393)
T ss_dssp -HTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHH-----------
T ss_pred -hCCCCCCEEEEeCCccccccC-CHHHcCCeEEEEECccccc-CCCCceeEEEEeCCHHHHHHHHHHHH-----------
Confidence 8 9999999999876543 4445689999999999999 767 6 888885 566665543310
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EE-EecCCCCC
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CT-IYGTYTSE 390 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~-~~~~~~~~ 390 (508)
...++.+....+++..+++. +....++..+.++.+.+.|.+.+ . +. +..|.-.
T Consensus 233 -------------~~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~------~~l~~v~~p~l~- 287 (393)
T 1n8p_A 233 -------------AIGAIPSPFDAWLTHRGLKT-----LHLRVRQAALSANKIAEFLAADK------ENVVAVNYPGLK- 287 (393)
T ss_dssp -------------HHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTSCT------TTEEEEECTTST-
T ss_pred -------------hcCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHhCC------CCceEEECCCCC-
Confidence 01123333333333334433 34455666667777777777652 2 32 2222110
Q ss_pred ccc---------CC-C-CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhh------hhhh
Q 010538 391 VSY---------HD-T-GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSD------LLSN 453 (508)
Q Consensus 391 ~~~---------~~-~-~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~------~~~~ 453 (508)
..+ .. . +++++|.+++.. . +...+...|...++.++.|..|+.... + ..++| ++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~--~~~~~l~~l~~~~~~~s~G~~~s~~~~-p---~~~~h~~~~~~~~~~ 360 (393)
T 1n8p_A 288 THPNYDVVLKQHRDALGGGMISFRIKGGA-E--AASKFASSTRLFTLAESLGGIESLLEV-P---AVMTHGGIPKEAREA 360 (393)
T ss_dssp TSTTHHHHHHHSGGGCCCSEEEEEESSCH-H--HHHHHHHHCSSSEECSCCCCSSCEEEC-T---TTTTSCSSCTTTTTT
T ss_pred CCccHHHHHhhCCCCCCccEEEEEeCCcH-H--HHHHHHhhCCcceECCCCCCCcceeec-c---ccccccccCHHHHHh
Confidence 000 01 3 789999997521 0 112344445555677888877764320 0 01122 4555
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
||. .++.||+|++.++++++|+.+.++++++
T Consensus 361 ~g~--------------~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 361 SGV--------------FDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp TSC--------------CTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCC--------------CCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 654 2689999999999999999999998765
No 133
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.94 E-value=2e-25 Score=238.34 Aligned_cols=344 Identities=11% Similarity=0.006 Sum_probs=226.4
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC--CCCCCceEEEcCChHHHHHHHHhhcCCCCCC
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN--ASMKDYKCIFTSGATAALKLVGEAFPWSHQS 129 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~ 129 (508)
+|+.+++++.+.+ ....+.....|........+.+++.+.+.+..| ++++ +|++|+|+++|+.+++.++...+|+
T Consensus 107 ~p~~~~~~a~~~l-~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd 183 (500)
T 3tcm_A 107 FSADSISRAKQIL-AMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANAD--DIFLTDGASPGVHLMMQLLIRNEKD 183 (500)
T ss_dssp SCHHHHHHHHHHH-TTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG--GEEEESSSHHHHHHHHHHHCCSTTE
T ss_pred CCHHHHHHHHHHH-HcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc--cEEEcCCHHHHHHHHHHHHcCCCCC
Confidence 4666777664433 221110112233222233334444444444344 5666 8999999999999999998447899
Q ss_pred eEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC
Q 010538 130 SYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS 209 (508)
Q Consensus 130 ~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~ 209 (508)
.|+++...|+++... ++..|.+++.++++.+... ..|++.++ ++|++.....+++++|++++
T Consensus 184 ~Vlv~~p~y~~~~~~---~~~~g~~~~~~~~~~~~~~-------------~~d~~~l~--~~l~~~~~~~~~~k~ivl~~ 245 (500)
T 3tcm_A 184 GILVPIPQYPLYSAS---IALHGGALVPYYLNESTGW-------------GLETSDVK--KQLEDARSRGINVRALVVIN 245 (500)
T ss_dssp EEEEEESCCTHHHHH---HHHTTCEEEEEECBTTTTS-------------BCCHHHHH--HHHHHHHHTTCEEEEEEEES
T ss_pred EEEEeCCCcHhHHHH---HHHcCCEEEEEecccccCC-------------CCCHHHHH--HHHHHHHhcCCCceEEEEEC
Confidence 999999888766554 4456999999998764321 11677777 55532111123789999999
Q ss_pred CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCC---------CCCC-cEEEEecc
Q 010538 210 ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLS---------KYPV-DFVVMSFY 274 (508)
Q Consensus 210 ~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~---------~~~~-D~~~~S~~ 274 (508)
++||||.+++.+++.++++ +|+++|+++++|++|+.... ..++. ..++ .+++.|+|
T Consensus 246 p~NPtG~~~s~~~l~~i~~---------la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~S 316 (500)
T 3tcm_A 246 PGNPTGQVLAEENQYDIVK---------FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVS 316 (500)
T ss_dssp SCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESS
T ss_pred CCCCCcccCCHHHHHHHHH---------HHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCC
Confidence 9999999999888777755 45559999999999875322 22211 1122 26678999
Q ss_pred ccc-cCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH----
Q 010538 275 KIF-GYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN---- 344 (508)
Q Consensus 275 K~~-g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~---- 344 (508)
|.| | ++| +|++++ ++++++.+.... ....+++..+.+++..+++
T Consensus 317 K~~~g-~~G~R~G~~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~~~~q~~~~~~l~~~~~ 370 (500)
T 3tcm_A 317 KGYYG-ECGKRGGYFEITGFSAPVREQIYKIA-------------------------SVNLCSNITGQILASLVMNPPKA 370 (500)
T ss_dssp STTTC-CGGGCCEEEEEESCCTTHHHHHHHHH-------------------------HTTCCCCHHHHHHHHHHHSCCCS
T ss_pred ccCCC-CCccceEEEEEeCCCHHHHHHHHHHH-------------------------hcccCCCHHHHHHHHHHhcCccc
Confidence 988 6 556 799998 777776654321 0123456666666666654
Q ss_pred -------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-------
Q 010538 345 -------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------- 410 (508)
Q Consensus 345 -------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------- 410 (508)
+... .+.+.++++++++++.+.|+++ +++++..+.+ +.++++++.-....
T Consensus 371 ~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~------~g~~~~~~~g--------~~~~~~~~~lp~~~~~~~~~~ 434 (500)
T 3tcm_A 371 SDESYASYKAE--KDGILASLARRAKALEHAFNKL------EGITCNEAEG--------AMYVFPQICLPQKAIEAAKAA 434 (500)
T ss_dssp SSTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTS------TTEECCCCCB--------TTEECCEECCCHHHHHHHHHH
T ss_pred cchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC------CCcEEecCCe--------EEEEeeeecCchhhHHHHHhc
Confidence 3332 5778889999999999999987 4788876543 55555444311100
Q ss_pred cc--CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHH
Q 010538 411 WF--GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDA 488 (508)
Q Consensus 411 ~~--~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev 488 (508)
.. +...+.++|+++||.+.+|..|.... ..+.+|+|++ ++.+++
T Consensus 435 g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~--------------------------------g~~~iRis~~--~~~e~i 480 (500)
T 3tcm_A 435 NKAPDAFYALRLLESTGIVVVPGSGFGQVP--------------------------------GTWHFRCTIL--PQEDKI 480 (500)
T ss_dssp TSCHHHHHHHHHHHHHCEECEESTTTCCCT--------------------------------TCCBEEEESC--SCTTTH
T ss_pred CCCcHHHHHHHHHHHCCEEEEeCcccCCCC--------------------------------CCCEEEEEEC--CCHHHH
Confidence 00 01113477888999999998876421 2568999999 899999
Q ss_pred HHHHHhhhhhhhh
Q 010538 489 KVNRCSSFDFVNF 501 (508)
Q Consensus 489 ~~l~~~~~~~~~~ 501 (508)
+++++.|+++++.
T Consensus 481 ~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 481 PAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 134
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.94 E-value=2.9e-25 Score=227.28 Aligned_cols=318 Identities=13% Similarity=0.092 Sum_probs=219.1
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.+++.+ +++.+.+++.+.+ .. +.++...|. .....++++++++++|++ + ++++|+|+
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~-~~-~~~~~~~y~-----~~~~~~l~~~la~~~g~~-~--~v~~~~g~ 95 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQV-EK-LLHVSNLYE-----NPWQEELAHKLVKHFWTE-G--KVFFANSG 95 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHH-HH-CSCCCTTBC-----CHHHHHHHHHHHHTSSSC-E--EEEEESSH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHH-Hh-ccccCcccC-----CHHHHHHHHHHHhhcCCC-C--eEEEeCch
Confidence 5678999875432 6788888775544 22 223322332 234567899999999984 6 89999999
Q ss_pred HHHHHHHHhhcC--C---CCC-CeEEEecccccchHHHHHHHHh-----cCCe-----EEEEccCCccCccccccccccc
Q 010538 113 TAALKLVGEAFP--W---SHQ-SSYMYTMENHNSVLGIREYALS-----QGAA-----AFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 113 t~al~~~~~~l~--~---~~g-~~vl~~~~~h~s~~~~~~~~~~-----~G~~-----v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
|+|+.+++.++. . ++| ++|++....|+.+......+.. .|.. +..+|.
T Consensus 96 t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 159 (375)
T 2eh6_A 96 TESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL---------------- 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT----------------
T ss_pred HHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC----------------
Confidence 999999886531 2 456 8899888776655433222210 0111 222221
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
.|+++++ +++ .+++++|++++++|+||.+.| +++|.++|++ +|+++|+|++|
T Consensus 160 ----~d~~~l~--~~l------~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~------------~~~~li~De~~ 215 (375)
T 2eh6_A 160 ----NDIDSVY--KLL------DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE------------KDVLLIIDEVQ 215 (375)
T ss_dssp ----TCHHHHH--TTC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------HTCEEEEECTT
T ss_pred ----chHHHHH--HHh------cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHH------------hCCEEEEeccc
Confidence 1578888 555 357899999999999999988 8888888887 99999999999
Q ss_pred c-CCCCC--CCCCCCC--CcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 253 G-CVTQP--PDLSKYP--VDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 253 ~-~g~~~--~d~~~~~--~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+ ++..+ +++...+ .|++++| |+++++.++|++++++++++.+.+...+. .
T Consensus 216 ~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~~~-----------------------~ 270 (375)
T 2eh6_A 216 TGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSHGS-----------------------T 270 (375)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSCCC-----------------------S
T ss_pred cCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCCCC-----------------------C
Confidence 8 55433 3344445 7888555 98885556999999998877665531111 1
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.++ +....+++.++++.+. .+.++++++++++.+.|+++. . ... +. .++++++.+++
T Consensus 271 ~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~------~-~~~-~~--------~g~~~~~~~~~- 327 (375)
T 2eh6_A 271 FGG-NPLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELG------K-GKV-KG--------RGLMLGLELER- 327 (375)
T ss_dssp STT-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTT------S-SEE-EE--------ETTEEEEECSS-
T ss_pred CCC-CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHh------c-CCc-eE--------EEEEEEEEEcC-
Confidence 123 3344444455666543 678889999999999998862 2 111 11 16888888864
Q ss_pred CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
+. .++.+.|.++||.++++. ++++|+++++.+|.+|
T Consensus 328 ~~-----~~~~~~l~~~gi~~~~~~---------------------------------------~~~iRi~~~~~~~~~~ 363 (375)
T 2eh6_A 328 EC-----KDYVLKALEKGLLINCTA---------------------------------------GKVLRFLPPLIIQKEH 363 (375)
T ss_dssp CC-----HHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHHH
T ss_pred cH-----HHHHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHHH
Confidence 22 347888888999987641 4789999999999999
Q ss_pred HHHHHHhhhhh
Q 010538 488 AKVNRCSSFDF 498 (508)
Q Consensus 488 v~~l~~~~~~~ 498 (508)
++++++.|+++
T Consensus 364 i~~~~~~l~~~ 374 (375)
T 2eh6_A 364 IDRAISVLREI 374 (375)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 135
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.94 E-value=2.4e-25 Score=229.64 Aligned_cols=312 Identities=12% Similarity=0.035 Sum_probs=219.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
.....++++.++++++.+ + .|++++| ++|+++++.++ .++|++|+++...|++..... ..++..|++++.+|.+
T Consensus 51 ~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~a~~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA-G--AVLTNTG-MSAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 125 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT
T ss_pred CccHHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHH-hCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC
Confidence 455788999999999987 4 6777666 89999999998 678899999999998766644 3446679999998864
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ .+++++|++++++|+||.+.|+++|.++|++
T Consensus 126 --------------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~------------ 165 (386)
T 1cs1_A 126 --------------------DEQALR--AAL------AEKPKLVLVESPSNPLLRVVDIAKICHLARE------------ 165 (386)
T ss_dssp --------------------CHHHHH--HHH------HTCCSEEEEECSCTTTCCCCCHHHHHHHHHH------------
T ss_pred --------------------CHHHHH--Hhh------ccCCcEEEEeCCCCCCCcccCHHHHHHHHHH------------
Confidence 245555 333 3568999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcc--eEEEEec-hhHhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGL--GALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++|+|++|+.+....++ ..++|+++.|+||++++|.+. |++++++ ++++.+.+...++
T Consensus 166 ~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~--------------- 229 (386)
T 1cs1_A 166 VGAVSVVDNTFLSPALQNPL-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--------------- 229 (386)
T ss_dssp TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH---------------
T ss_pred cCCEEEEECCCcccccCCcc-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc---------------
Confidence 99999999999987765444 467999999999999878663 9999987 6766665442211
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCc------
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEV------ 391 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~------ 391 (508)
.++.+....++...++++ +....++..+..+++.+.|++++ .++-+ .+.-...
T Consensus 230 ---------~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~------~l~~~~~~~l~~~~~~~~~ 289 (386)
T 1cs1_A 230 ---------GVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVKYLQTQP------LVKKLYHPSLPENQGHEIA 289 (386)
T ss_dssp ---------TCBCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHTTCT------TEEEEECTTSTTSTTHHHH
T ss_pred ---------CCCCCHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHHHhcCC------CeEEEECCCCCCCccHHHH
Confidence 123344433333334432 34556667777888888887763 33222 1110000
Q ss_pred --ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc---C------CCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 392 --SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT---G------CFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 392 --~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~---g------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.....+++++|.+++. ...+.+.|.++||.++. | +.|..... ...+++.+.++|.
T Consensus 290 ~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~----~~~~~~~~~~~g~---- 355 (386)
T 1cs1_A 290 ARQQKGFGAMLSFELDGD------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH----AGMAPEARAAAGI---- 355 (386)
T ss_dssp HHHCSSCCSEEEEEESSC------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT----TTSCHHHHHHHTC----
T ss_pred HHhcCCCceEEEEEECCC------HHHHHHHHHhCCcceEcccCCCcceeeeccccccc----ccCCHHHHHhcCC----
Confidence 0012378999998642 23478889999999974 3 22222110 0023445555554
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.++.+|+|++..+++++++++.++++++.
T Consensus 356 ----------~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 356 ----------SETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp ----------CTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred ----------CCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 25899999999999999999999987653
No 136
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=9.8e-25 Score=224.77 Aligned_cols=357 Identities=13% Similarity=0.050 Sum_probs=229.8
Q ss_pred CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCe
Q 010538 51 LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS 130 (508)
Q Consensus 51 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~ 130 (508)
.+++.+++++.+.+ ...+ +. ......++++.++++++.+ ++++|+|+|+|+.+++.++..++|++
T Consensus 17 ~~~~~~~~a~~~~~-~~~~------~~----~~~~~~~l~~~la~~~~~~----~~~~~~~gt~al~~~~~~~~~~~gd~ 81 (393)
T 1mdo_A 17 AMGAEELAAVKTVL-DSGW------IT----TGPKNQELEAAFCRLTGNQ----YAVAVSSATAGMHIALMALGIGEGDE 81 (393)
T ss_dssp CCCHHHHHHHHHHH-HHTC------CS----SSHHHHHHHHHHHHHHCCS----EEEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred CCCHHHHHHHHHHH-hcCC------cC----CChHHHHHHHHHHHHhCCC----cEEEecChHHHHHHHHHHcCCCCCCE
Confidence 35778877765543 2211 11 1245678999999999974 68999999999999999985678999
Q ss_pred EEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC
Q 010538 131 YMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS 209 (508)
Q Consensus 131 vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~ 209 (508)
|+++...|+++... ++..|++++.+|.+.+ ..+ |+++++ +++ ++++++|+++
T Consensus 82 Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~l------~~~~~~v~~~- 134 (393)
T 1mdo_A 82 VITPSMTWVSTLNM---IVLLGANPVMVDVDRDTLMV---------------TPEHIE--AAI------TPQTKAIIPV- 134 (393)
T ss_dssp EEEESSSCHHHHHH---HHHTTCEEEEECBCTTTCCB---------------CHHHHH--HHC------CTTEEEECCB-
T ss_pred EEeCCCccHhHHHH---HHHCCCEEEEEeccCCcCCC---------------CHHHHH--Hhc------CCCceEEEEe-
Confidence 99999888877644 4457999999998753 334 688888 555 3468888865
Q ss_pred CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCC-CcEEEEecc--ccccCCCcceEE
Q 010538 210 ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYP-VDFVVMSFY--KIFGYPTGLGAL 286 (508)
Q Consensus 210 ~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~-~D~~~~S~~--K~~g~P~G~G~l 286 (508)
+++|.+.|+++|.++|++ +|+++|+|++|+.|... +...++ .|++++|+| |+++ +...|++
T Consensus 135 --~~~G~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~-~~~~g~~ 198 (393)
T 1mdo_A 135 --HYAGAPADLDAIYALGER------------YGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNIT-CAEGGIV 198 (393)
T ss_dssp --CGGGCCCCHHHHHHHHHH------------HTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSC-SSSCEEE
T ss_pred --CCCCCcCCHHHHHHHHHH------------cCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccc-cccceEE
Confidence 479999999999999998 89999999999987543 222334 899999999 8888 4336888
Q ss_pred EEe-chhHhhhccccccCceEEecccchhhhhhccCcccccc---CCC-CChhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 010538 287 IMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE---DGT-ASFLSIASIRHGFNLINSLTVPAICRHIASL 361 (508)
Q Consensus 287 ~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~gt-~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l 361 (508)
+.+ +++++.+.+....+.... . +..........++ .|+ .....+. ...++..+. +++++.++.+++
T Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~g~~~~~~~~~-~a~~~~~l~--~~~~~~~~~~~~ 269 (393)
T 1mdo_A 199 VTDNPQFADKLRSLKFHGLGVD--A----WDRQSGGRAPQAEVLAPGYKYNLPDLN-AAIALAQLQ--KLDALNARRAAI 269 (393)
T ss_dssp EESCHHHHHHHHHHTBTTEECC-----------------CCEESSCCCBCCCCHHH-HHHHHHHHH--THHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhcCCccc--c----hhhhcccccccccccccCccCCCCHHH-HHHHHHHHH--HHHHHHHHHHHH
Confidence 886 677776665433221100 0 0000000011121 232 1122222 122223322 367888888999
Q ss_pred HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH--H
Q 010538 362 GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA--C 439 (508)
Q Consensus 362 ~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~--~ 439 (508)
++++.+.|.++ ++++..++... ....+.++++.+++.. ...+..++.+.|.++||.+++|..|.... .
T Consensus 270 ~~~l~~~L~~~-------~~~~~~~~~~~--~~~~~~~~~v~~~~~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~ 339 (393)
T 1mdo_A 270 AAQYHQAMADL-------PFQPLSLPSWE--HIHAWHLFIIRVDEAR-CGITRDALMASLKTKGIGTGLHFRAAHTQKYY 339 (393)
T ss_dssp HHHHHHHHHTS-------SCEECCCCSSC--EECCCSCEEEECCHHH-HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHH
T ss_pred HHHHHHHHhcC-------CcccccCCCCC--CCceeEEEEEEecccc-cccCHHHHHHHHHhCCCCcccccCccccChhh
Confidence 99999999887 36665432100 0012467888886200 00234568899999999999988763211 0
Q ss_pred HhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 440 AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 440 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.. |.+...+...- ....+.+|++++.++|.+|+++++++|+++++
T Consensus 340 ~~--~~~~~~~~~~~--------------~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 384 (393)
T 1mdo_A 340 RE--RFPTLTLPDTE--------------WNSERICSLPLFPDMTESDFDRVITALHQIAG 384 (393)
T ss_dssp HH--HSTTCCCHHHH--------------HHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred hc--cCCccCChhHH--------------HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 00000000000 00145899999999999999999999988764
No 137
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.94 E-value=1.1e-24 Score=226.95 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHHH--HHHhhcCC--CC--------CCeEEEecccccchHHHHHHHHhcCC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAALK--LVGEAFPW--SH--------QSSYMYTMENHNSVLGIREYALSQGA 153 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~--~~~~~l~~--~~--------g~~vl~~~~~h~s~~~~~~~~~~~G~ 153 (508)
..++|+.+|++++++++ +|++|+|++++++ +++.++.. ++ |++|++....|+++.. .++..|.
T Consensus 72 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~ 146 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAE--NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL---LLQTLGF 146 (423)
T ss_dssp CHHHHHHHHHHTTSCGG--GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH---HHHHHTC
T ss_pred hHHHHHHHHHHhCCChh--hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH---HHHHcCC
Confidence 56789999999999988 8999999999998 88888733 22 5899988766655544 4455699
Q ss_pred eEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEE-eCCCCCCccccCHHHHHHHHcCCcc
Q 010538 154 AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAF-PSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 154 ~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~-~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
+++.+|.+.++ + |+++++ +++++ ++++++|++ ++++||||.++|.+++.++++
T Consensus 147 ~~~~v~~~~~g-~---------------d~~~l~--~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~---- 200 (423)
T 3ez1_A 147 ELLTVDMQSDG-P---------------DVDAVE--RLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAG---- 200 (423)
T ss_dssp EEEEEEEETTE-E---------------CHHHHH--HHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHT----
T ss_pred EEEeccCCCCC-C---------------CHHHHH--HHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHH----
Confidence 99999987543 4 678888 55421 467898865 589999999999998888887
Q ss_pred ccccCCC-CCCCeEEEEeccccCCC-------CCCCC-------CCCCCcEEEEeccccccCC-CcceEEEEechhHhhh
Q 010538 233 ILEISPF-SKGRWMVLIDAAKGCVT-------QPPDL-------SKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLL 296 (508)
Q Consensus 233 ~~~~~~~-~~~g~~vivD~a~~~g~-------~~~d~-------~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l 296 (508)
+| +++|+++|+|++|+... .+.++ ...+.++++.|+||+++ | .++|++++++++++.+
T Consensus 201 -----~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G~r~G~~~~~~~~~~~~ 274 (423)
T 3ez1_A 201 -----LQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWL 274 (423)
T ss_dssp -----CCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SSSSCEEEEECHHHHHHH
T ss_pred -----HHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhcc-CCcceEEEEeCHHHHHHH
Confidence 67 78999999999998311 11222 13357799999999744 4 2489999999887766
Q ss_pred ccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH-HH--hcChHHHHHHHHHHHHHHHHHHhc-c
Q 010538 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL-IN--SLTVPAICRHIASLGMYVRKVLLS-L 372 (508)
Q Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~-~~--~~g~~~i~~~~~~l~~~l~~~L~~-l 372 (508)
...... ...+.+.....++..+++. .. ...++..++.+.+.++.+.+.|.+ +
T Consensus 275 ~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (423)
T 3ez1_A 275 SKYLGA------------------------QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAEL 330 (423)
T ss_dssp HHHHHH------------------------SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh------------------------hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 543111 1122333434444434432 00 012344445555555555555433 1
Q ss_pred cCCCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhh
Q 010538 373 RHENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDL 450 (508)
Q Consensus 373 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~ 450 (508)
+. .+ ++++..+.. +.++++.+++. +...+.+.|.++||.+++ |..|..+.
T Consensus 331 ~~---~~~~~~~~~p~~--------g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~g~~~~~~~------------ 382 (423)
T 3ez1_A 331 GE---GGEYATWTLPKG--------GYFISLDTAEP-----VADRVVKLAEAAGVSLTPAGATYPAGQ------------ 382 (423)
T ss_dssp TT---TTSSEEECCCSB--------SSCEEEEESSS-----CHHHHHHHHHHTTEECCCTTTTSSTTC------------
T ss_pred Cc---CCCceEEeCCCc--------cEEEEEECCCC-----cHHHHHHHHHHCCcEEecCcccccCCC------------
Confidence 10 01 366665543 78899998754 234588899999999998 65554211
Q ss_pred hhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 451 LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
...++++|||++.. |.++++++++.|.++++.+.
T Consensus 383 ------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 383 ------------------DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT 416 (423)
T ss_dssp ------------------CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 01268999999866 99999999999999887653
No 138
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.93 E-value=5e-25 Score=230.16 Aligned_cols=309 Identities=11% Similarity=0.038 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHH--HHHHhhcCC--C---------CCCeEEEecccccchHHHHHHHHhcC
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAAL--KLVGEAFPW--S---------HQSSYMYTMENHNSVLGIREYALSQG 152 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al--~~~~~~l~~--~---------~g~~vl~~~~~h~s~~~~~~~~~~~G 152 (508)
..++|+.+|++++++++ +|++|+|+++++ ++++.++.. + +|++|++....|+++ ...++..|
T Consensus 80 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~---~~~~~~~g 154 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVE--QVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRH---FSITERFG 154 (427)
T ss_dssp CHHHHHHHHHHHTSCGG--GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHH---HHHHHHTT
T ss_pred cHHHHHHHHHHhCCCcc--eEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHH---HHHHHHcC
Confidence 57789999999999988 899999999999 588887732 2 289999887666554 44555679
Q ss_pred CeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe-CCCCCCccccCHHHHHHHHcCCc
Q 010538 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP-SECNFSGSRFNLDLINIMKKNPE 231 (508)
Q Consensus 153 ~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~-~~~n~tG~~~~i~~i~~l~~~~~ 231 (508)
.+++.+|++.++ + |+++++ +++. .+++++|++. +++||||.++|.+++.++++
T Consensus 155 ~~~~~v~~~~~g-~---------------d~~~l~--~~l~-----~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~--- 208 (427)
T 3ppl_A 155 FEMISVPMNEDG-P---------------DMDAVE--ELVK-----NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSA--- 208 (427)
T ss_dssp CEEEEEEEETTE-E---------------CHHHHH--HHTT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHH---
T ss_pred CEEEEeCCCCCC-C---------------CHHHHH--HHHh-----cCCCeEEEECCCCCCCCCccCCHHHHHHHHH---
Confidence 999999987654 4 688888 5552 3578888764 89999999999998888877
Q ss_pred cccccCCC-CCCCeEEEEeccccC---CC---CCCCCC-------CCCCcEEEEeccccccCCC-cceEEEEechhHhhh
Q 010538 232 RILEISPF-SKGRWMVLIDAAKGC---VT---QPPDLS-------KYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLL 296 (508)
Q Consensus 232 ~~~~~~~~-~~~g~~vivD~a~~~---g~---~~~d~~-------~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l 296 (508)
+| +++|++||+|++|+. +. .++++. ..+.++++.|+||+++ |+ ++|++++++++++.+
T Consensus 209 ------~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~ 281 (427)
T 3ppl_A 209 ------METAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWY 281 (427)
T ss_dssp ------CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHH
T ss_pred ------HHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHH
Confidence 66 779999999999974 11 122321 3367899999999854 52 489999998887765
Q ss_pred ccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHH---HHhcChHHHHHHHHHHHHHHHHHHhccc
Q 010538 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL---INSLTVPAICRHIASLGMYVRKVLLSLR 373 (508)
Q Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 373 (508)
...... ...+.+.....++..+++. +.+ .++..++++.+.++++.+.|.+..
T Consensus 282 ~~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~l 336 (427)
T 3ppl_A 282 TGHAGI------------------------RGIGPNKVNQLAHARYFGDAEGVRA-VMRKHAASLAPKFNKVLEILDSRL 336 (427)
T ss_dssp HHHHHH------------------------HCSCCCHHHHHHHHHHHCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhc------------------------ccCCCCHHHHHHHHHHHhChhhHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 543110 1112233333333333331 111 245556666666666666664410
Q ss_pred CCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh
Q 010538 374 HENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN 453 (508)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~ 453 (508)
. ..+++++..|.. +.++++++++.+ ...+.+.|.++||.+++|..|.....
T Consensus 337 ~--~~~~~~~~~p~~--------g~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~g~~~~~~~-------------- 387 (427)
T 3ppl_A 337 A--EYGVAQWTVPAG--------GYFISLDVVPGT-----ASRVAELAKEAGIALTGAGSSYPLRQ-------------- 387 (427)
T ss_dssp G--GGTCCEECCCSB--------SSCEEEECSTTC-----HHHHHHHHHHTTEECCCTTTTSGGGC--------------
T ss_pred C--CCCceEEeCCCc--------cEEEEEECCcch-----HHHHHHHHHHCCCEEecCcCcCCCCC--------------
Confidence 0 001466655543 788999987642 34588889999999999554443210
Q ss_pred hhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 454 IEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+++|||++.. +.++++++++.|.++++.+
T Consensus 388 ---------------~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 388 ---------------DPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp ---------------CTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 01268999999765 9999999999999887654
No 139
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=1.4e-24 Score=223.78 Aligned_cols=358 Identities=13% Similarity=0.029 Sum_probs=229.9
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
++.+.|..+... +++.+.+++.+.+....+ . .......++++.++++++.+ ++++++|+|+|+.+
T Consensus 22 ~~~~~l~~~~p~-~~~~~~~a~~~~~~~~~~-------~---~~~~~~~~l~~~la~~~~~~----~~i~~~~gt~al~~ 86 (391)
T 3dr4_A 22 SDLPRISVAAPR-LDGNERDYVLECMDTTWI-------S---SVGRFIVEFEKAFADYCGVK----HAIACNNGTTALHL 86 (391)
T ss_dssp ------CCCCCC-CCSSHHHHHHHHHHHTCC-------S---SCSHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHH
T ss_pred CCCceeccCCCC-CCHHHHHHHHHHHHcCCc-------c---CCChHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHH
Confidence 566777766554 466777776554432211 1 01245788999999999986 47889999999999
Q ss_pred HHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
++.++..++|++|+++...|+++...+ +..|++++.++.+. +..+ |+++++ +++
T Consensus 87 ~l~~~~~~~gd~vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~~----- 141 (391)
T 3dr4_A 87 ALVAMGIGPGDEVIVPSLTYIASANSV---TYCGATPVLVDNDPRTFNL---------------DAAKLE--ALI----- 141 (391)
T ss_dssp HHHHHTCCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCTTTCSB---------------CGGGSG--GGC-----
T ss_pred HHHHcCCCCcCEEEECCCchHHHHHHH---HHCCCEEEEEecCccccCc---------------CHHHHH--Hhc-----
Confidence 999986678999999999998876554 45699999999873 3444 577888 554
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCC--CCCCCcEEEEe--c
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDL--SKYPVDFVVMS--F 273 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~--~~~~~D~~~~S--~ 273 (508)
++++++|+ ++|+||...|+++|.++|++ +|+++|+|++|+.|....+. ... .|+.++| .
T Consensus 142 -~~~~~~v~---~~n~tG~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~ 204 (391)
T 3dr4_A 142 -TPRTKAIM---PVHLYGQICDMDPILEVARR------------HNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFG 204 (391)
T ss_dssp -CTTEEEEC---CBCGGGCCCCHHHHHHHHHH------------TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBT
T ss_pred -CCCceEEE---EECCCCChhhHHHHHHHHHH------------cCCEEEEECcccccceECCeeeccc-CCEEEEECCC
Confidence 45788887 45799999999999999998 99999999999987654442 222 2566666 6
Q ss_pred cccccCCCcceEEEEech-hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH
Q 010538 274 YKIFGYPTGLGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP 352 (508)
Q Consensus 274 ~K~~g~P~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~ 352 (508)
||+++++ ..|+++.+++ +.+.+.+...++... . ..+. ....|. ++ .+..+.+++.+....+++
T Consensus 205 ~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~----~-~~~~--------~~~~g~-~~-~~~~l~aa~~~~~~~~~~ 268 (391)
T 3dr4_A 205 NAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDP----N-RRYW--------FPIVGF-NY-RMTNIQAAIGLAQLERVD 268 (391)
T ss_dssp TSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCT----T-STTC--------CSSCCC-BC-BCCHHHHHHHHHHHHTHH
T ss_pred CCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCC----C-Cccc--------cccccc-cc-CCCHHHHHHHHHHHHHHH
Confidence 6998843 3577777654 555555443322110 0 0000 000111 11 122333444444445678
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCceEEEecC--CCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc
Q 010538 353 AICRHIASLGMYVRKVLLSLRHENGADVCTIYGT--YTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT 430 (508)
Q Consensus 353 ~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 430 (508)
++.++.+++++++.+.|+++ ++++..+ .... .....++++.+++.. ..+..++.+.|.++||.+++
T Consensus 269 ~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~~~~---~~~~~~~~i~~~~~~--~~~~~~l~~~L~~~GI~v~~ 336 (391)
T 3dr4_A 269 EHLAARERVVGWYEQKLARL-------GNRVTKPHVALTG---RHVFWMYTVRLGEGL--STTRDQVIKDLDALGIESRP 336 (391)
T ss_dssp HHHHHHHHHHHHHHHHHGGG-------TTSEECCCCCTTS---CCCCSSEEEEECSSC--SSCHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHHHHhhcC-------CccccCcCCCCCC---cceeEEEEEEECCcc--chhHHHHHHHHHHCCCceee
Confidence 89999999999999999886 3555544 2210 112345677776421 14456789999999999998
Q ss_pred CC---CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 431 GC---FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 431 g~---~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
|. +|.+.... + ....+..+- ....+.+|++++.++|+|||+++++.|++++
T Consensus 337 ~~~p~~~~~~~~~--~--~~~~~~~~~--------------~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 337 VFHPMHIMPPYAH--L--ATDDLKIAE--------------ACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp CCCCGGGSGGGGG--G--CCTTCHHHH--------------HHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred cCCccccChhhhh--c--CcCCChHHH--------------HHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 85 33332110 0 000000000 0125789999999999999999999998764
No 140
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.93 E-value=3.2e-25 Score=230.48 Aligned_cols=311 Identities=13% Similarity=-0.000 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccCCc
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~~~ 163 (508)
...++++.+++++|.+ + .|++++| ++|+.+++. + .++|++|+++...|++..... ..++..|++++.+|.+
T Consensus 68 ~~~~l~~~la~~~g~~-~--~i~~~sG-~~ai~~~~~-l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-- 139 (403)
T 3cog_A 68 TRNCLEKAVAALDGAK-Y--CLAFASG-LAATVTITH-L-LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS-- 139 (403)
T ss_dssp HHHHHHHHHHHHHTCS-E--EEEESCH-HHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT--
T ss_pred hHHHHHHHHHHHhCCC-c--EEEECCH-HHHHHHHHH-H-hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC--
Confidence 3677899999999987 4 6777766 589999998 6 688999999999998766543 3456679999999875
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
|+++++ +++ .++|++|++++++||||.+.|+++|.++|++ +|
T Consensus 140 ------------------d~~~l~--~~i------~~~t~~v~~~~p~nptG~~~~l~~i~~la~~------------~g 181 (403)
T 3cog_A 140 ------------------KIKLLE--AAI------TPETKLVWIETPTNPTQKVIDIEGCAHIVHK------------HG 181 (403)
T ss_dssp ------------------SHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHTS------------SS
T ss_pred ------------------CHHHHH--Hhc------CcCCeEEEEECCCCCCCeeeCHHHHHHHHHH------------cC
Confidence 255666 444 4678999999999999999999999999998 89
Q ss_pred -eEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 244 -WMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 244 -~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++++|++++.+.....+. .++|+++.|+||++++|.| .|+++++ +++.+.+.+...++
T Consensus 182 ~~~livD~~~~~~~~~~~~~-~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~---------------- 244 (403)
T 3cog_A 182 DIILVVDNTFMSPYFQRPLA-LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSL---------------- 244 (403)
T ss_dssp CCEEEEECTTTCTTTCCTTT-TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHH----------------
T ss_pred CCEEEEECCCcccccCCccc-cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhc----------------
Confidence 9999999998875322222 5799999999999998876 4999996 56666655432211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCCc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSEV 391 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~~ 391 (508)
.++.+....+++..+++.+ ....++..+.+..+.+.+++.+. ....|++++..+..
T Consensus 245 --------g~~~~~~~~~~~~~~l~~l-----~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~--- 308 (403)
T 3cog_A 245 --------GAVPSPIDCYLCNRGLKTL-----HVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQC--- 308 (403)
T ss_dssp --------CCCCCHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC---
T ss_pred --------CCCCCHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcC---
Confidence 1234444444444455432 33344444555555555554310 00112333332221
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc---CC------CCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT---GC------FCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~---g~------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
...+++++|.+++.. ..+.+.|.+.||.++. |. +|+..... .-+++.+.++|.
T Consensus 309 --~~~g~~~~~~l~~~~------~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~----~~~~~~~~~~g~------ 370 (403)
T 3cog_A 309 --TGCTGMVTFYIKGTL------QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHA----SVLKNDRDVLGI------ 370 (403)
T ss_dssp --SCCCSEEEEEESSCH------HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTT----TSCHHHHHHHTC------
T ss_pred --CCCceEEEEEecCCH------HHHHHHHHhCCcceEccCCCCcceeeecccccccc----cCCHHHHHhcCC------
Confidence 123889999886421 2467788888996543 32 34322100 012233444543
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++.||+|++..+++++|+.+.++++++++
T Consensus 371 --------~~~~iRlSvg~e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 371 --------SDTLIRLSVGLEDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp --------CTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred --------CcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence 268999999999999999999999887654
No 141
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.93 E-value=6.5e-25 Score=226.56 Aligned_cols=330 Identities=12% Similarity=0.068 Sum_probs=224.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.+++ +++++.+.+++.+.+. . +......+ .....+++++.++++++++++ +|++|+|+
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~-~-~~~~~~~~-----~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 113 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAE-T-LMAMPQTL-----PTPMRGEFYRTLTAILPPELN--RVFPVNSG 113 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHH-H-CCCCCTTS-----CCHHHHHHHHHHHHTSCTTEE--EEEEESSH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHH-h-CCCCcccc-----CCHHHHHHHHHHHHhcCCCcC--EEEEcCcH
Confidence 56778888543 5578888888766443 2 11111111 245678899999999998777 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEeccccc-chHHHHHHHHhcCCeEE---EEccCCcc-Cccccccccccccccccchhhh
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHN-SVLGIREYALSQGAAAF---AIDVEEAV-DNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~v~---~v~~~~~~-~~~~l~~~~~~~~~~~~d~~~l 186 (508)
++|+.+++.++. +.+++.||+....|+ ++..+... .|.++. .+|+..+. .+. ..|++++
T Consensus 114 ~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~------------~~d~~~l 178 (395)
T 1vef_A 114 TEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSV---TWEPKYREPFLPLVEPVEFIP------------YNDVEAL 178 (395)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHT---CCCHHHHGGGCSCSSCEEEEC------------TTCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhh---cCCcccccccCCCCCCeeEeC------------CCcHHHH
Confidence 999999988762 245677777766554 45444432 344311 11221110 000 0157788
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCC----
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQ---- 257 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~---- 257 (508)
+ +++ ++++++|++++++|+||.+.| +++|.++|++ +|+++|+|++|+ ++..
T Consensus 179 ~--~~i------~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~------------~~~~li~Dea~~~~~~~g~~~ 238 (395)
T 1vef_A 179 K--RAV------DEETAAVILEPVQGEGGVRPATPEFLRAAREITQE------------KGALLILDEIQTGMGRTGKRF 238 (395)
T ss_dssp H--HHC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------HTCEEEEECTTTTTTTTSSSS
T ss_pred H--HHh------ccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEEecccCCccCCchh
Confidence 8 555 357899999998999999998 8999999997 999999999998 3321
Q ss_pred CCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHH
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIA 337 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 337 (508)
+++......|++ |+||+++++.++|++++++++++.+.+. +. ....+.+...++
T Consensus 239 ~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~---~~---------------------~~~~~~~~~~~~ 292 (395)
T 1vef_A 239 AFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKG---GH---------------------GTTFGGNPLAMA 292 (395)
T ss_dssp THHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTT---SS---------------------CCSSTTCHHHHH
T ss_pred HhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccC---Cc---------------------CCCcCCCHHHHH
Confidence 112223356876 6799988544599999999877665541 10 011245666777
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 338 SIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 338 ~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
++.++++.+.+ +.+.++++++++++.+.|+++.. +.+... ++ .++++++.+++. . .++
T Consensus 293 a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~-~~--------~g~~~~~~~~~~-~-----~~l 350 (395)
T 1vef_A 293 AGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPS----PKIREV-RG--------MGLMVGLELKEK-A-----APY 350 (395)
T ss_dssp HHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC----TTEEEE-EE--------ETTEEEEEESSC-S-----HHH
T ss_pred HHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc----CceEEE-EE--------EEEEEEEEEcCh-H-----HHH
Confidence 77778887654 45678899999999999988631 112111 11 268899988642 1 347
Q ss_pred HHHHh-hCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 418 EKLAS-LSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 418 ~~~L~-~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.+.|. ++||.++++. .+++|+++++.+|.+|++++++.|+
T Consensus 351 ~~~l~~~~gi~v~~~~---------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (395)
T 1vef_A 351 IARLEKEHRVLALQAG---------------------------------------PTVIRFLPPLVIEKEDLERVVEAVR 391 (395)
T ss_dssp HHHHHHHHCEECEESS---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEecCC---------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 78887 8999988741 4789999999999999999999998
Q ss_pred hhh
Q 010538 497 DFV 499 (508)
Q Consensus 497 ~~~ 499 (508)
+++
T Consensus 392 ~~l 394 (395)
T 1vef_A 392 AVL 394 (395)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 142
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.93 E-value=2.9e-24 Score=223.78 Aligned_cols=375 Identities=12% Similarity=0.019 Sum_probs=229.8
Q ss_pred CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC
Q 010538 50 TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS 129 (508)
Q Consensus 50 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~ 129 (508)
.++++.+++++.+.+....+.+ .....+ ...+.+++++.+++++|++ ++++++|+|+|+.+++.++..++|+
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~g--~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~~gd 83 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSNRWAI--SGYWTG--EESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIGEGD 83 (418)
T ss_dssp SCCCHHHHHHHHHHHHHTCCST--TSBCCS--SCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CCCCHHHHHHHHHHHhcCCccc--cCcccC--CHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCCCcC
Confidence 3457888888766443221110 111112 2455788999999999986 3567777899999999998557889
Q ss_pred eEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEe
Q 010538 130 SYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFP 208 (508)
Q Consensus 130 ~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~ 208 (508)
+|+++...|+++...+ +..|++++.+|.+. +..+ |+++++ +++ ++++++|+++
T Consensus 84 ~Vl~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i------~~~~~~v~~~ 137 (418)
T 2c81_A 84 EVIVPSLTWIATATAV---LNVNALPVFVDVEADTYCI---------------DPQLIK--SAI------TDKTKAIIPV 137 (418)
T ss_dssp EEEEESSSCTHHHHHH---HHTTCEEEEECBCTTTCSB---------------CHHHHG--GGC------CTTEEEECCB
T ss_pred EEEECCCccHhHHHHH---HHcCCEEEEEecCCCCCCc---------------CHHHHH--Hhh------CCCCeEEEEe
Confidence 9999999998876554 45699999999875 3444 688888 555 4578888754
Q ss_pred CCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-C-CCCCCCCCcEEEEec--cccccCCCcce
Q 010538 209 SECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-P-PDLSKYPVDFVVMSF--YKIFGYPTGLG 284 (508)
Q Consensus 209 ~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-~-~d~~~~~~D~~~~S~--~K~~g~P~G~G 284 (508)
|+||...|+++|.++|++ +|+++|+|++|+.+.. . ..+... .|+.+.|+ ||+++ +...|
T Consensus 138 ---~~~G~~~~~~~i~~~~~~------------~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~-~g~~g 200 (418)
T 2c81_A 138 ---HLFGSMANMDEINEIAQE------------HNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLT-AGEGG 200 (418)
T ss_dssp ---CCTTCCCCHHHHHHHHHH------------TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSC-SSSCE
T ss_pred ---CCcCCcccHHHHHHHHHH------------CCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccC-CCCeE
Confidence 589999999999999998 9999999999998763 1 112222 24555555 99999 63368
Q ss_pred EEEEe-chhHhhhccccccCceEEecccchhhhhhccCcccccc--CCCCChhH----HHHHHHHHHHHHhcChHHHHHH
Q 010538 285 ALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE--DGTASFLS----IASIRHGFNLINSLTVPAICRH 357 (508)
Q Consensus 285 ~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~----~~~l~~al~~~~~~g~~~i~~~ 357 (508)
+++.+ +++++.+.+....+....... . .....+. .++++..+ +-.+.+++......+++.+.++
T Consensus 201 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~ 271 (418)
T 2c81_A 201 IIVTKNPRLFELIQQLRADSRVYCDDS----S-----ELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAI 271 (418)
T ss_dssp EEEESCHHHHHHHHHHHBTTEEECSCG----G-----GCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCccccccc----c-----ccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 88885 566666665433322110000 0 0011111 11111111 1112223322222357888899
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEecCCC--CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhC-CCe---eccC
Q 010538 358 IASLGMYVRKVLLSLRHENGADVCTIYGTYT--SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLS-GIQ---LRTG 431 (508)
Q Consensus 358 ~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~-gI~---v~~g 431 (508)
.+++++++.+.|.++ +++++..++. .. ...+++.+.+++.....++..++.+.|.++ ||. ++.|
T Consensus 272 ~~~~~~~l~~~L~~~------~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~ 341 (418)
T 2c81_A 272 REKNAMFLNDALSKI------DGIKVMKRPPQVSR----QTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPP 341 (418)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECCCCTTEEE----CCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECC
T ss_pred HHHHHHHHHHHhccC------CCcccCCCCCCCcc----cccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccc
Confidence 999999999999887 4788875432 10 012466677763100013445688899888 999 9888
Q ss_pred CCCCchHHHhh---cCCCh----hhh-hhhhhcCCccCCCccccCCCCCceEEEecCCCC-CHHHHHHHHHhhhhhhhh
Q 010538 432 CFCNPGACAKY---LGLSH----SDL-LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS-TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 432 ~~~~~~~~~~~---~~~~~----s~~-~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-t~eev~~l~~~~~~~~~~ 501 (508)
..|.... +. ++... ++. ++.+..+ .|.. -.....+.||++++.++ |.|||++++++|+++++.
T Consensus 342 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 342 YLPVHKN--PLFCPWTKNRYLKSVRKTEAYWRGL-HYPV----SERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp CCCGGGC--TTCCGGGCTTSCHHHHCCHHHHHTC-CCHH----HHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred ccccccC--chhcccccccccccccccccccccC-CChH----HHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 6432110 00 00000 000 0000000 0000 00001368999999999 999999999999988764
No 143
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.93 E-value=1.2e-24 Score=224.00 Aligned_cols=354 Identities=12% Similarity=0.053 Sum_probs=227.1
Q ss_pred CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeE
Q 010538 52 YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 52 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+++.+.+++.+.+... + ..+. .....+++++.+++++|.+ + .|++++| |+|+++++.++..++|++|
T Consensus 15 ~~~~~~~a~~~~l~~~---~--~~~~----~~~~~~~l~~~la~~~~~~-~--~i~~~sG-t~al~~~l~~l~~~~gd~V 81 (388)
T 1b9h_A 15 YDDAERNGLVRALEQG---Q--WWRM----GGDEVNSFEREFAAHHGAA-H--ALAVTNG-THALELALQVMGVGPGTEV 81 (388)
T ss_dssp CCHHHHHHHHHHHHTS---C--CBTT----TCSHHHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcC---C--eeec----CCHHHHHHHHHHHHHhCCC-e--EEEeCCH-HHHHHHHHHHcCCCCcCEE
Confidence 4578888776644321 1 1111 1245778999999999986 3 6777766 8999999999855788999
Q ss_pred EEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC
Q 010538 132 MYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE 210 (508)
Q Consensus 132 l~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~ 210 (508)
+++..+|+++.... +..|++++.++++.+ +.+ |+++++ +++ +++|++|+ +
T Consensus 82 i~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~i------~~~~~~v~---~ 132 (388)
T 1b9h_A 82 IVPAFTFISSSQAA---QRLGAVTVPVDVDAATYNL---------------DPEAVA--AAV------TPRTKVIM---P 132 (388)
T ss_dssp EEESSSCTHHHHHH---HHTTCEEEEECBCTTTCCB---------------CHHHHH--HHC------CTTEEEEC---C
T ss_pred EECCCccHHHHHHH---HHcCCEEEEEecCCCcCCC---------------CHHHHH--Hhc------CcCceEEE---E
Confidence 99999998876544 456999999998753 444 688888 555 45678877 7
Q ss_pred CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCCCCCC-CcEEEEeccccccCCCcceEEE
Q 010538 211 CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDLSKYP-VDFVVMSFYKIFGYPTGLGALI 287 (508)
Q Consensus 211 ~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~~~~~-~D~~~~S~~K~~g~P~G~G~l~ 287 (508)
+|+||.+.|+++|.++|++ +|+++|+|++|+.|..+ .++..++ +++.++|.||+++++. .|+++
T Consensus 133 ~n~tG~~~~l~~i~~la~~------------~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~ 199 (388)
T 1b9h_A 133 VHMAGLMADMDALAKISAD------------TGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVV 199 (388)
T ss_dssp BCGGGCCCCHHHHHHHHHH------------HTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEE
T ss_pred eCCccCcCCHHHHHHHHHH------------cCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEE
Confidence 8999999999999999998 89999999999987654 3344444 4555555668887454 59998
Q ss_pred Eech-h--HhhhccccccCceEEecccchhhhhhccCcccc---ccCCC---CChhHHHHHHHHHHHHHhcChHHHHHHH
Q 010538 288 MRND-A--AKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL---FEDGT---ASFLSIASIRHGFNLINSLTVPAICRHI 358 (508)
Q Consensus 288 ~~~~-~--~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~gt---~~~~~~~~l~~al~~~~~~g~~~i~~~~ 358 (508)
.+++ + ++.+.... +.+.. ..... ...|+ ++....+++..+++ .+++..++.
T Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~-----~l~~~~~~~ 259 (388)
T 1b9h_A 200 FPDGETEKYETAFLRH-SCGRP--------------RDDRRYFHKIAGSNMRLNEFSASVLRAQLA-----RLDEQIAVR 259 (388)
T ss_dssp ECTTCHHHHHHHHHHT-BTTCC--------------TTCSSCCCCSCCCBCBCBHHHHHHHHHHHT-----THHHHHHHH
T ss_pred ECCHHHHHHHHHHHHH-hCCCC--------------ccCccceeecccccCCcCHHHHHHHHHHHH-----HHHHHHHHH
Confidence 8876 4 34443221 11100 00011 12233 33333333333322 256677888
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH
Q 010538 359 ASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA 438 (508)
Q Consensus 359 ~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 438 (508)
+++++++.+.|+++ +++++..+.... ....++++++.+++..+ .+..++.+.|.++||.++.+.......
T Consensus 260 ~~~~~~l~~~L~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~ 329 (388)
T 1b9h_A 260 DERWTLLSRLLGAI------DGVVPQGGDVRA--DRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRAIYRT 329 (388)
T ss_dssp HHHHHHHHHHHHTS------TTCEECCCCTTC--CBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCCGGGS
T ss_pred HHHHHHHHHHhccC------CCccccCCCcCC--CccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCccccC
Confidence 89999999999987 368777542100 00126889999865310 123458888989999998865321100
Q ss_pred -HHhhcCCCh---hhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC-CHHHHHHHHHhhhhhhh
Q 010538 439 -CAKYLGLSH---SDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS-TFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 439 -~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~-t~eev~~l~~~~~~~~~ 500 (508)
....+|.+. ..+..+|+.. .....+.+|++++..+ |++||+++++.|+++++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 330 DAFWELGAPDESVDAIARRCPNT----------DAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp HHHHHSSCCSSCHHHHHHTCHHH----------HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred hHhHhcCCCcccccccccCCHHH----------HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 000011100 0000011110 0012468999999999 99999999999998765
No 144
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.93 E-value=1.6e-25 Score=234.09 Aligned_cols=303 Identities=11% Similarity=0.070 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHc-----CCCCCCce---EEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHh-cCCeEE
Q 010538 86 VRAAREQVLDYF-----NASMKDYK---CIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALS-QGAAAF 156 (508)
Q Consensus 86 ~~~~r~~la~~~-----~~~~~~~~---i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~-~G~~v~ 156 (508)
..++++.+++++ +++++ + |++|+|+++|+++++.++ .++|++|+++...|+++. ..++. .|.+++
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~--~~~~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~y~~~~---~~~~~~~g~~~~ 163 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID--NMSRPIVTNALTHGLSLVGDLF-VNQDDTILLPEHNWGNYK---LVFNTRNGANLQ 163 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG--GBCCCEEESHHHHHHHHHHHHH-CCTTCEEEEESSCCTHHH---HHHTTTTCCEEE
T ss_pred CHHHHHHHHHHHhccCcccCCC--ccceEEEcCCchHHHHHHHHHH-hCCCCEEEEcCCcCccHH---HHHHHhcCCeEE
Confidence 466788888888 88887 8 999999999999999998 678899999887666554 44555 799999
Q ss_pred EEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccc
Q 010538 157 AIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILE 235 (508)
Q Consensus 157 ~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~ 235 (508)
.+|.+. +..+ |+++++ +++++ ..++++++++++++||||.++|.+.+.++++
T Consensus 164 ~~~~~~~~~~~---------------d~~~l~--~~l~~---~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~------- 216 (430)
T 2x5f_A 164 TYPIFDKDGHY---------------TTDSLV--EALQS---YNKDKVIMILNYPNNPTGYTPTHKEVTTIVE------- 216 (430)
T ss_dssp EECCBCTTSCB---------------CSHHHH--HHHHH---CCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-------
T ss_pred EEeccCccCCc---------------CHHHHH--HHHHh---cCCCCEEEEEcCCCCCCCCcCCHHHHHHHHH-------
Confidence 999865 2233 567777 54421 1237899999999999999999777766666
Q ss_pred cCCCCC-----CCeEEEEeccccCCCC----CC----CCCC-CCC---cEEEEeccccccCCCc--ceEEEE---echhH
Q 010538 236 ISPFSK-----GRWMVLIDAAKGCVTQ----PP----DLSK-YPV---DFVVMSFYKIFGYPTG--LGALIM---RNDAA 293 (508)
Q Consensus 236 ~~~~~~-----~g~~vivD~a~~~g~~----~~----d~~~-~~~---D~~~~S~~K~~g~P~G--~G~l~~---~~~~~ 293 (508)
+|++ +|+++|+|++|+.... .. ++.. .+. ++++.|+||++| ++| +|++++ +++++
T Consensus 217 --~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~ 293 (430)
T 2x5f_A 217 --AIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTK 293 (430)
T ss_dssp --HHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHH
T ss_pred --HHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHH
Confidence 5667 8999999999975321 11 2222 345 788999999998 557 799999 88887
Q ss_pred hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH----HHHhcChHHHHHHHHHHHHHHHHHH
Q 010538 294 KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN----LINSLTVPAICRHIASLGMYVRKVL 369 (508)
Q Consensus 294 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~----~~~~~g~~~i~~~~~~l~~~l~~~L 369 (508)
+.+...... ..+...++++....+++.++++ +... ++.+++++.++++++.+.|
T Consensus 294 ~~l~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~L 351 (430)
T 2x5f_A 294 EVLEAKVKG--------------------LIRSNISSGPLPTQSAVKHVLKNNKQFDKE--IEQNIQTLKERYEVTKEVV 351 (430)
T ss_dssp HHHHHHHHH--------------------HHHTTTSSCCHHHHHHHHHHHHSCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--------------------hhhcccCCCChHHHHHHHHHHccChHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 766543110 0011234566676777777776 3332 4668899999999999999
Q ss_pred hcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhh-CCCeeccCCCCCchHHHhhcCCChh
Q 010538 370 LSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASL-SGIQLRTGCFCNPGACAKYLGLSHS 448 (508)
Q Consensus 370 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~g~~~~~~~~~~~~~~~~s 448 (508)
++... ..++++..+.. +.++++.+++ .+..++.+.|.+ +||.+++|.
T Consensus 352 ~~~~~---~~g~~~~~~~~--------g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~---------------- 399 (430)
T 2x5f_A 352 YADQY---HSHWQAYDFNS--------GYFMAIKVHD-----VDPEALRKHLIDKYSIGVIALN---------------- 399 (430)
T ss_dssp TCGGG---TTTEEECCCCB--------SSEEEEEESS-----SCHHHHHHHHHHHHCEECEECS----------------
T ss_pred HhhCC---CCCceeeCCCc--------eEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecCC----------------
Confidence 83200 01577765432 5668888862 234567788876 999998861
Q ss_pred hhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 449 DLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+++|||++. ++.++++++++.|+++++.+
T Consensus 400 -----------------------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 400 -----------------------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp -----------------------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred -----------------------CCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 5789999995 59999999999999887643
No 145
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.93 E-value=7.9e-25 Score=241.88 Aligned_cols=324 Identities=12% Similarity=0.029 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
..+.++++.+|+++|++. .+++++|+|+|+.+++.++ .++|++||++...|+++... .+...|++++.++.+.+
T Consensus 173 ~~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al-~~pGD~VLv~~~~H~S~~~~--~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSAL-VSNGDLVLFDRNNHKSVYNS--ALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp THHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHH--HTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHh-cCCCCEEEEcCCchHHHHHH--HHHHCCCEEEEEeCCcc
Confidence 457889999999999974 4888999999999999998 68899999999999988765 13346999998876432
Q ss_pred -----cCccccccccccccccccchhhh-----hcCCCCCCCCCC---CCCc-eEEEEeCCCCCCccccCHHHHHHHHcC
Q 010538 164 -----VDNDGLSESLVTSTKISLLPIQR-----RKGASFPERDPA---GDAY-NLFAFPSECNFSGSRFNLDLINIMKKN 229 (508)
Q Consensus 164 -----~~~~~l~~~~~~~~~~~~d~~~l-----~~~~~l~~~~~~---~~~t-~lv~~~~~~n~tG~~~~i~~i~~l~~~ 229 (508)
+.+ |++++ + +++.++... .+++ ++++++++ |++|.+.|+++|.++|++
T Consensus 247 ~~~i~g~i---------------d~e~L~~~~le--~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~ 308 (730)
T 1c4k_A 247 PYGFIGGI---------------YDSDFDEKKIR--ELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGH 308 (730)
T ss_dssp TTCCEEEE---------------CGGGSCHHHHH--HHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGG
T ss_pred ccCccCCC---------------CHHHHhhhHHH--HHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHH
Confidence 112 45566 7 555421000 1112 88999987 689999999999999998
Q ss_pred CccccccCCCCCCCeEEEEeccccCC---------CCCCCCCCCCCc----EEEEeccccccCCCcceEEEEechhHhhh
Q 010538 230 PERILEISPFSKGRWMVLIDAAKGCV---------TQPPDLSKYPVD----FVVMSFYKIFGYPTGLGALIMRNDAAKLL 296 (508)
Q Consensus 230 ~~~~~~~~~~~~~g~~vivD~a~~~g---------~~~~d~~~~~~D----~~~~S~~K~~g~P~G~G~l~~~~~~~~~l 296 (508)
+|+++++|++|+.+ ..+++...+++| +++.|+||++++|.+.|+++++++.+..-
T Consensus 309 ------------~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~ 376 (730)
T 1c4k_A 309 ------------LCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ 376 (730)
T ss_dssp ------------GBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS
T ss_pred ------------cCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCc
Confidence 89999999999642 123455455788 99999999988787778998988764110
Q ss_pred ccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCC
Q 010538 297 KNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHE 375 (508)
Q Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~ 375 (508)
...+ +...+. .....+..+++++..++++.+|++++...+..+..+++.++++++++.|++ +
T Consensus 377 ~~~i----------~~~~~~----~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i--- 439 (730)
T 1c4k_A 377 LRYC----------DHKHFN----NSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG--- 439 (730)
T ss_dssp TTCC----------CHHHHH----HHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred cccc----------CHHHHH----HHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhC---
Confidence 0000 000111 012345578899999999999999876633456678899999999999988 5
Q ss_pred CCCceEEEecCCCCC--------------------cc--------cCC-CC------ceEEEEeeCC-------CCCccC
Q 010538 376 NGADVCTIYGTYTSE--------------------VS--------YHD-TG------SMVSFNLKRP-------DGSWFG 413 (508)
Q Consensus 376 ~~~~~~~~~~~~~~~--------------------~~--------~~~-~~------~~v~~~~~~~-------~~~~~~ 413 (508)
++++++.+.... .. ... .+ ..++|..++. ....++
T Consensus 440 ---~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~ 516 (730)
T 1c4k_A 440 ---SMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVP 516 (730)
T ss_dssp ---CSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCC
T ss_pred ---CCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCC
Confidence 368887653200 00 000 01 1156766431 112245
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.|.++||.+... ..+.+|++++.++|.+++++|++
T Consensus 517 ~~~l~~~L~e~GI~v~~~---------------------------------------~~~~ir~~~s~g~t~e~i~~Ll~ 557 (730)
T 1c4k_A 517 ATIVANYLRDHGIIPEKS---------------------------------------DLNSILFLMTPAETPAKMNNLIT 557 (730)
T ss_dssp HHHHHHHHHHTTCCCSEE---------------------------------------CSSEEEEECCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEEC---------------------------------------CCCeEEEEeCCCCCHHHHHHHHH
Confidence 667999999999987542 14689999999999999999999
Q ss_pred hhhhhhhhh
Q 010538 494 SSFDFVNFS 502 (508)
Q Consensus 494 ~~~~~~~~~ 502 (508)
+|.++.+..
T Consensus 558 aL~~i~~~~ 566 (730)
T 1c4k_A 558 QLLQLQRLI 566 (730)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999887543
No 146
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.93 E-value=2.5e-25 Score=230.90 Aligned_cols=342 Identities=14% Similarity=0.053 Sum_probs=222.3
Q ss_pred CCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhh-hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc
Q 010538 47 AGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLA-TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF 123 (508)
Q Consensus 47 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l 123 (508)
++..+++|.+++++.+.+ .+.+ ++|.+.+..+.. .....+.+++++++++|++++ .|++++| ++|+.+++.++
T Consensus 37 ~~~n~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~v~~~sG-s~a~~~a~~~~ 112 (420)
T 3gbx_A 37 ASENYTSPRVMQAQGSQL-TNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA--NVQPHSG-SQANFAVYTAL 112 (420)
T ss_dssp TTCCCCCHHHHHHHTSGG-GGCCC--------------CHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH-hcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc--eeEecCc-HHHHHHHHHHh
Confidence 334456888988875543 2223 455543332222 234455688999999999876 6666665 78999999988
Q ss_pred CCCCCCeEEEecccccchHH-HHHH-HHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 124 PWSHQSSYMYTMENHNSVLG-IREY-ALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 124 ~~~~g~~vl~~~~~h~s~~~-~~~~-~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
.++|++|++....|+++.. +... ....+..+..++.+.++.+ |+++++ +++.+ .+
T Consensus 113 -~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~~-----~~ 169 (420)
T 3gbx_A 113 -LQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKI---------------DYDEMA--KLAKE-----HK 169 (420)
T ss_dssp -CCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSC---------------CHHHHH--HHHHH-----HC
T ss_pred -cCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCc---------------CHHHHH--HHHHh-----cC
Confidence 6889999999988887442 2111 1112345555566544444 577887 55421 25
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCcEEEEecccc
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFVVMSFYKI 276 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~~~S~~K~ 276 (508)
+++|++++++|+ ...|+++|.++|++ +|+++|+|++|+.|.. +..+. .+|++++|+||+
T Consensus 170 ~~~v~~~~~~~~--~~~~l~~l~~l~~~------------~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~ 233 (420)
T 3gbx_A 170 PKMIIGGFSAYS--GVVDWAKMREIADS------------IGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKT 233 (420)
T ss_dssp CSEEEECCTTCC--SCCCHHHHHHHHHH------------TTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGG
T ss_pred CeEEEEecCccC--CccCHHHHHHHHHH------------cCCEEEEECCcchhceecccCCcccc--cCCEEEeecccC
Confidence 799998877764 58999999999998 9999999999875432 33333 389999999999
Q ss_pred ccCCCcceEEEEec---hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 277 FGYPTGLGALIMRN---DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 277 ~g~P~G~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
++||.| |+++.++ ++.+.+.+..+.+ ..++++...++++..++..+.+.++++
T Consensus 234 ~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~ 289 (420)
T 3gbx_A 234 LAGPRG-GLILAKGGDEELYKKLNSAVFPS-----------------------AQGGPLMHVIAGKAVALKEAMEPEFKV 289 (420)
T ss_dssp GCSCSC-EEEEESSCCHHHHHHHHHHHC---------------------------CCCCHHHHHHHHHHHHHTTSHHHHH
T ss_pred CCCCCc-eEEEEcCCcHHHHHHhhhhcCCC-----------------------CCCCcchhHHHHHHHHHHHHHhHhHHH
Confidence 966887 9999987 6655554432221 124566677777776766543445688
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.+++.++++++.+.|.+. +++++.+... ++++++.+.... .+...+.+.|.++||.+++...
T Consensus 290 ~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~ 352 (420)
T 3gbx_A 290 YQQQVAKNAKAMVEVFLNR-------GYKVVSGGTE-------NHLFLLDLVDKN---LTGKEADAALGRANITVNKNSV 352 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHTTEECEEECC
T ss_pred HHHHHHHHHHHHHHHHHhc-------CCeeccCCCC-------CeEEEEEcCCCC---CCHHHHHHHHHHCCcEeccccC
Confidence 8999999999999999875 6787764322 688888875421 2345688889999999987321
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
..... .....+.+|+++... .+++++++++++|++.++.
T Consensus 353 ~~~~~-----------------------------~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 353 PNDPK-----------------------------SPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp TTCSS-----------------------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcc-----------------------------ccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 11100 000134599999765 3589999999999887654
No 147
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.93 E-value=7e-24 Score=221.57 Aligned_cols=351 Identities=10% Similarity=0.056 Sum_probs=231.6
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|+.++. ..+|.+++++.+.+ .....++...+. .....+.++.++++++++++ +|+||+|+
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~-~~~~~~~~~~~~-----~~~~~~l~~~la~~~~~~~~--~v~~~~gg 112 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI-DAMSHVMFGGIT-----HAPAIELCRKLVAMTPQPLE--CVFLADSG 112 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHH-HHCSCCCCSSEE-----CHHHHHHHHHHHHHSCTTCC--EEEEESSH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHH-HhcccccccccC-----CHHHHHHHHHHHHhCCCCCC--EEEEeCCH
Confidence 567899986654 25788888876654 332222221221 23356677889999998888 99999999
Q ss_pred HHHHHHHHhhcC--CC----CCCeEEEecc-cccchHHHHHHHH-----h--c---CCeEEEEccCCc---cCccccccc
Q 010538 113 TAALKLVGEAFP--WS----HQSSYMYTME-NHNSVLGIREYAL-----S--Q---GAAAFAIDVEEA---VDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~--~~----~g~~vl~~~~-~h~s~~~~~~~~~-----~--~---G~~v~~v~~~~~---~~~~~l~~~ 172 (508)
++|+++++.++. .. +++.|++... .|++...+..... + . ...+..++.... .....+
T Consensus 113 tea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (429)
T 1s0a_A 113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER--- 189 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGG---
T ss_pred HHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHH---
Confidence 999999987652 11 4778887764 4544443332210 0 0 113455554311 001011
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
|+++++ +++++. .+++++|+++.+ +|+||.+.| +++|.++|++ +|+++|
T Consensus 190 ---------d~~~l~--~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~------------~~~~li 243 (429)
T 1s0a_A 190 ---------DMVGFA--RLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDR------------EGILLI 243 (429)
T ss_dssp ---------GGHHHH--HHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHH------------HTCEEE
T ss_pred ---------HHHHHH--HHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHH------------cCCEEE
Confidence 567777 554211 246788888888 899999888 8888888887 999999
Q ss_pred Eecccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 248 IDAAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 248 vD~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|++|+ +|... .+......|+++ ++|+++++ .++|++++++++++.+.+...++
T Consensus 244 ~De~~~~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~------------------ 303 (429)
T 1s0a_A 244 ADEIATGFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTLSATLTTREVAETISNGEAGC------------------ 303 (429)
T ss_dssp EECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCCEEEEECHHHHHHHHTSTTSS------------------
T ss_pred EeehhhCCcccchHHHhhhcCCCCCEEE--ecccccCCCccceEEEeCHHHHHHhhcCCCcc------------------
Confidence 999997 54322 122233567775 55988854 56899999998876654320000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.......+.|..++++..++++.+.+ +.+.++++++++++.+.|+++.. .+++..+.+. +.+++
T Consensus 304 -~~~~~t~~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~~~---------g~~~~ 367 (429)
T 1s0a_A 304 -FMHGPTFMGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPARD---AEMVADVRVL---------GAIGV 367 (429)
T ss_dssp -CSCCCTTTTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGG---CTTEEEEEEE---------TTEEE
T ss_pred -cccCCCCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhc---CCCEEEEEEe---------eEEEE
Confidence 00001123467777888888887765 35778899999999999987520 1244433221 57888
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+++. .+...+.+.|.++||.+++. .+.+|||+++
T Consensus 368 ~~~~~~----~~~~~l~~~l~~~Gi~v~~~----------------------------------------~~~iRis~~~ 403 (429)
T 1s0a_A 368 VETTHP----VNMAALQKFFVEQGVWIRPF----------------------------------------GKLIYLMPPY 403 (429)
T ss_dssp EEESSC----BCHHHHHHHHHHTTEECCCB----------------------------------------TTEEEECCCT
T ss_pred EEECCc----ccHHHHHHHHHHCCCEEecc----------------------------------------CCEEEEECCC
Confidence 888642 33456888888899998752 3689999999
Q ss_pred CCCHHHHHHHHHhhhhhhhhhhhcc
Q 010538 482 MSTFEDAKVNRCSSFDFVNFSQFLN 506 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~~~~~ 506 (508)
.+|.+|++++++.|+++++.+++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~~~~~~ 428 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQDETFFC 428 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGGGBC
T ss_pred CCCHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999887776655
No 148
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.93 E-value=2.5e-25 Score=230.21 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=200.8
Q ss_pred HHHHHHHHHHcCC-----CC-CCceEEEcCChHHHHHHHHhhcCCCCCC----eEEEecccccchHHHHHHHHhcCCeEE
Q 010538 87 RAAREQVLDYFNA-----SM-KDYKCIFTSGATAALKLVGEAFPWSHQS----SYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 87 ~~~r~~la~~~~~-----~~-~~~~i~~t~g~t~al~~~~~~l~~~~g~----~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
.++|+.+|++++. .+ + +|++|+|+++++.+++.++ ..+|+ +|+++...|+++.. .++..|++++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~--~i~~t~G~~~al~~~~~~l-~~~Gd~~~~~Vlv~~P~y~~~~~---~~~~~g~~~~ 144 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDR--YIVVGTGSTQLCQAAVHAL-SSLARSQPVSVVAAAPFYSTYVE---ETTYVRSGMY 144 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSS--EEEEEEHHHHHHHHHHHHH-HHTSSSSSEEEEECSSCCTHHHH---HHHTTCBTTE
T ss_pred HHHHHHHHHHHHhcCCCCCCCC--eEEEeCChHHHHHHHHHHh-cCCCCCCcceEEEcCCCchhHHH---HHHHcCCeEE
Confidence 6678888888772 33 5 8999999999999999998 57788 99999877776554 4455688888
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++++.+ .++ .+++++|++++++||||.+++ +| +++
T Consensus 145 ~~~~d~~---------------------~l~-----------~~~~k~v~l~~p~NPtG~~~~--~l---~~~------- 180 (391)
T 3bwn_A 145 KWEGDAW---------------------GFD-----------KKGPYIELVTSPNNPDGTIRE--TV---VNR------- 180 (391)
T ss_dssp EEEEEST---------------------TCC-----------CCSCEEEEEESSCTTTCCCCC--CC---C---------
T ss_pred EecCCHH---------------------HcC-----------CCCCEEEEECCCCCCCchhHH--HH---HHH-------
Confidence 8876431 112 246799999999999999996 33 221
Q ss_pred CCCCCCC--eEEEEeccccCCC-CCCCCCCCCCcEEEEeccccccCCCc--ceEEEE-echhHhhhccccccCceEEecc
Q 010538 237 SPFSKGR--WMVLIDAAKGCVT-QPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIM-RNDAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 237 ~~~~~~g--~~vivD~a~~~g~-~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~ 310 (508)
+++ ++||+|++|+.+. .++.. ..+.++++.|+||+|| ++| +|++++ ++++++.+.....
T Consensus 181 ----~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~l~~~l~~~~~--------- 245 (391)
T 3bwn_A 181 ----PDDDEAKVIHDFAYYWPHYTPITR-RQDHDIMLFTFSKITG-HAGSRIGWALVKDKEVAKKMVEYII--------- 245 (391)
T ss_dssp -------CCCEEEEECTTCSTTTSCCCC-CBCCSEEEEEHHHHHS-CGGGCEEEEEECCHHHHHHHHHHHH---------
T ss_pred ----hhcCCCEEEEeCCCCCCCCCcccc-CCCCeEEEEechhhcC-CCccceEEEEecCHHHHHHHHHHhc---------
Confidence 144 9999999998642 23332 3467899999999999 668 599998 7777766554311
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH---------hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceE
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN---------SLTVPAICRHIASLGMYVRKVLLSLRHENGADVC 381 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~---------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~ 381 (508)
....+.+.....++..+++... +..++.++++++++++++.+.|+++ +++
T Consensus 246 ---------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~ 304 (391)
T 3bwn_A 246 ---------------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES------DAF 304 (391)
T ss_dssp ---------------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC------SSE
T ss_pred ---------------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC------CCc
Confidence 1113345555556666666432 3357888999999999999999987 357
Q ss_pred EEecCCCCCcc-----cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhc
Q 010538 382 TIYGTYTSEVS-----YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456 (508)
Q Consensus 382 ~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~ 456 (508)
++..+.+.... ....+.++++.+++. .. +.+.|.++||.+++|..|..
T Consensus 305 ~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~--~~-----~~~~l~~~gV~v~pg~~fg~-------------------- 357 (391)
T 3bwn_A 305 TLPKYPEAFCNYFGKSLESYPAFAWLGTKEE--TD-----LVSELRRHKVMSRAGERCGS-------------------- 357 (391)
T ss_dssp ECCCCCCEEETTTTEEECCCCSEEEEEESSS--CC-----HHHHHHHTTEECEEGGGGTC--------------------
T ss_pred ccccCCccccccccccCCCcceEEEecCCcH--HH-----HHHHHHHCCEEEccCCCCCC--------------------
Confidence 66544321000 001245788888642 22 77888999999999876532
Q ss_pred CCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
..+++|||++. +.+++++++++|+++++
T Consensus 358 --------------~~~~iRis~~~--~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 358 --------------DKKHVRVSMLS--REDVFNVFLERLANMKL 385 (391)
T ss_dssp --------------CTTEEEEESCS--CHHHHHHHHHHHHSCC-
T ss_pred --------------CCCEEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 15789999994 89999999999988764
No 149
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.93 E-value=2.3e-24 Score=225.02 Aligned_cols=307 Identities=12% Similarity=0.048 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEcCChHHHH--HHHHhhcCCCC------------CCeEEEecccccchHHHHHHHHhc
Q 010538 86 VRAAREQVLDYFNASMKDYKCIFTSGATAAL--KLVGEAFPWSH------------QSSYMYTMENHNSVLGIREYALSQ 151 (508)
Q Consensus 86 ~~~~r~~la~~~~~~~~~~~i~~t~g~t~al--~~~~~~l~~~~------------g~~vl~~~~~h~s~~~~~~~~~~~ 151 (508)
..++|+.+|++++++++ +|++|+|+++++ .+++.++. ++ +++|++....|+++.. .++..
T Consensus 78 ~~~lr~~ia~~~~~~~~--~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~---~~~~~ 151 (422)
T 3d6k_A 78 IADIRELWAEALGLPAD--LVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFT---ITEHF 151 (422)
T ss_dssp CHHHHHHHHHHHTCCGG--GEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHH---HHHHH
T ss_pred CHHHHHHHHHHhCCChh--HEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHH---HHHHc
Confidence 56789999999999988 899999999997 67777773 33 3468888766665554 44556
Q ss_pred CCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEE-EeCCCCCCccccCHHHHHHHHcCC
Q 010538 152 GAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFA-FPSECNFSGSRFNLDLINIMKKNP 230 (508)
Q Consensus 152 G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~-~~~~~n~tG~~~~i~~i~~l~~~~ 230 (508)
|++++.+|.+.++ + |+++++ +++. .+++++|+ +++++||||.++|.+++.++++
T Consensus 152 g~~~~~v~~~~~g-~---------------d~~~l~--~~l~-----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~-- 206 (422)
T 3d6k_A 152 GFEMINVPMTDEG-P---------------DMGVVR--ELVK-----DPQVKGMWTVPVFGNPTGVTFSEQTCRELAE-- 206 (422)
T ss_dssp TCEEEEEEEETTE-E---------------CHHHHH--HHHT-----STTEEEEEECCSSCTTTCCCCCHHHHHHHHH--
T ss_pred CCEEEecCCCCCC-C---------------CHHHHH--HHHh-----cCCCeEEEEcCCCCCCCCCCCCHHHHHHHHH--
Confidence 9999999987543 4 577887 5542 13678888 6899999999999998888877
Q ss_pred ccccccCCCC-CCCeEEEEeccccC---CCC---CCCC-------CCCCCcEEEEeccccccCCCc--ceEEEEechhHh
Q 010538 231 ERILEISPFS-KGRWMVLIDAAKGC---VTQ---PPDL-------SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK 294 (508)
Q Consensus 231 ~~~~~~~~~~-~~g~~vivD~a~~~---g~~---~~d~-------~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~ 294 (508)
+|+ ++|++||+|++|+. +.. ..++ ...+.++++.|++|+.+ | | +|++++++++++
T Consensus 207 -------~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~-GlriG~~~~~~~l~~ 277 (422)
T 3d6k_A 207 -------MSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH-A-GSGVSFFASSKENIE 277 (422)
T ss_dssp -------CCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSC-T-TSSCEEEECCHHHHH
T ss_pred -------HHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcC-c-ccceEEEEeCHHHHH
Confidence 676 79999999999973 211 1122 23356799999999844 6 5 899999988877
Q ss_pred hhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHhcc
Q 010538 295 LLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN--SLTVPAICRHIASLGMYVRKVLLSL 372 (508)
Q Consensus 295 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l 372 (508)
.+..... ....+.+.....++.++++... ...++.+++++++.++++.+.|.+.
T Consensus 278 ~l~~~~~------------------------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (422)
T 3d6k_A 278 WYASHAN------------------------VRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSR 333 (422)
T ss_dssp HHHHHHH------------------------HHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------hhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6654311 0112334444444444543210 0124556666677777777776542
Q ss_pred cCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc-CCCCCchHHHhhcCCChhhhh
Q 010538 373 RHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT-GCFCNPGACAKYLGLSHSDLL 451 (508)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~ 451 (508)
.. ..+++++..|.. +.++++++++. +...+.+.|.++||.+++ |..|..+.
T Consensus 334 l~--~~~~~~~~~p~~--------g~~~~~~~~~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~------------- 385 (422)
T 3d6k_A 334 LS--EYGVAKWTSPTG--------GYFISVDVVPG-----TASRVVELAKEAGIALTGAGSSFPLHN------------- 385 (422)
T ss_dssp HG--GGTCEEECCCSB--------SSCEEEEESTT-----CHHHHHHHHHHTTEECCCTTTTSGGGC-------------
T ss_pred cC--cCCceEEeCCCc--------ceEEEEECCCC-----CHHHHHHHHHHCCeEEEcCccccCCCC-------------
Confidence 10 001366665543 78899998753 234578889999999998 44443210
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
....+++|||++. +|.++++++++.|+++++.+
T Consensus 386 -----------------~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 386 -----------------DPNNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp -----------------CTTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 0025789999998 99999999999999887543
No 150
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.93 E-value=5.5e-24 Score=219.37 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=224.1
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++. ..+|.+.+++.+... ... .....+ .....+++++++++++| ++ ++++|+|+
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~-~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~~g 102 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQAN-RVT-LTSRAF-----HSDQLGPWYEKVAKLTN--KE--MVLPMNTG 102 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHT-TCS-CCCTTS-----EETTHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHH-hcc-cccccc-----CCHHHHHHHHHHHHhcC--CC--EEEEeCcH
Confidence 567799987632 247888888766442 221 111111 23446788899999998 55 79999999
Q ss_pred HHHHHHHHhhcCC---------CCCCeEEEecccccchHHHHHHHHhc-C---------CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW---------SHQSSYMYTMENHNSVLGIREYALSQ-G---------AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~---------~~g~~vl~~~~~h~s~~~~~~~~~~~-G---------~~v~~v~~~~~~~~~~l~~~~ 173 (508)
|+|+++++..+.. .++++|++....|++.......+... + ..+..++.+
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 170 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG------------ 170 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT------------
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc------------
Confidence 9999998886532 23678888887776554332221100 0 112233221
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|+++++ +++ .+++++|++++++||||.++| +++|.++|++ +|+++|+|
T Consensus 171 --------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~------------~~~~li~D 222 (392)
T 3ruy_A 171 --------DLEALK--AAI------TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKK------------ENVLFVAD 222 (392)
T ss_dssp --------CHHHHH--HHC------CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHT------------TTCEEEEE
T ss_pred --------cHHHHH--HHh------ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 467777 554 468999999999999999999 9999999998 99999999
Q ss_pred cccc-CCCC--CC--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQ--PP--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~--~~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|+ ++.. +. +......|++++| |.+++- ..+|++++++++++.+.+...+.
T Consensus 223 e~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~~~~G~~~~~~~~~~~~~~~~~~~-------------------- 280 (392)
T 3ruy_A 223 EIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGVFPISCAAANRDILGVFEPGSHGS-------------------- 280 (392)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTTSCCEEEEECHHHHTTCCTTSSCC--------------------
T ss_pred echhCCCccccchhhhccCCCCCEEEEc--hhhhCChhhhEEEEECHHHHhhhccCCcCC--------------------
Confidence 9995 3321 12 2223346887665 988730 13899999998876665442211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
..+.+...++++.++++.+.. +++.++++++++++.+.|+++.. +.+....+. ++++++.
T Consensus 281 ----~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~---------g~~~~~~ 340 (392)
T 3ruy_A 281 ----TFGGNPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDN----PMITEVRGK---------GLFIGIE 340 (392)
T ss_dssp ----SSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCC----TTEEEEEEE---------TTEEEEE
T ss_pred ----CCCCCHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcC----CCceEEEee---------eeEEEEE
Confidence 124566777777788887654 67788999999999999988621 234433322 6788888
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
+++ +. .++.+.|.++||.+++|. .+++|+++++.+
T Consensus 341 ~~~-~~-----~~l~~~l~~~gi~v~~~~---------------------------------------~~~iRi~~~~~~ 375 (392)
T 3ruy_A 341 LNE-PA-----RPYCEQLKAAGLLCKETH---------------------------------------ENVIRIAPPLVI 375 (392)
T ss_dssp ESS-CS-----HHHHHHHHTTTEECCCBT---------------------------------------TTEEEECCCTTC
T ss_pred Ecc-hH-----HHHHHHHHHCCcEEecCC---------------------------------------CCEEEEECCCCC
Confidence 765 22 358888889999998752 578999999999
Q ss_pred CHHHHHHHHHhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFV 499 (508)
Q Consensus 484 t~eev~~l~~~~~~~~ 499 (508)
|.+|++++++.|++++
T Consensus 376 ~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 376 SEEDLEWAFQKIKAVL 391 (392)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998865
No 151
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.93 E-value=1.5e-24 Score=225.11 Aligned_cols=308 Identities=11% Similarity=0.046 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHc------CCCCCCceEEEcCChHHHHHHHHhhcCCCCCC-----eEEEe-cccccchHHHHHHH---Hh
Q 010538 86 VRAAREQVLDYF------NASMKDYKCIFTSGATAALKLVGEAFPWSHQS-----SYMYT-MENHNSVLGIREYA---LS 150 (508)
Q Consensus 86 ~~~~r~~la~~~------~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~-----~vl~~-~~~h~s~~~~~~~~---~~ 150 (508)
..++|+.+|+++ +++++ +|++|+|+|+|+++++.++ .++|+ +|+++ ...|+++....... ..
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~t~al~~~~~~l-~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQ--NIALTNGSQSAFFYLFNLF-AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGG--GEEEESCHHHHHHHHHHHH-SBC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc--cEEEeCCcHHHHHHHHHHH-cCCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 556777788776 56777 8999999999999999998 56665 78876 66666554332211 11
Q ss_pred cCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcC
Q 010538 151 QGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKN 229 (508)
Q Consensus 151 ~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~ 229 (508)
.+..+..++.+. ...+ |+++++ .++++++|++++++||||.++|.+++.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~---------------d~~~l~----------~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~- 207 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHV---------------DFEHLH----------IGEETGMICVSRPTNPTGNVITDEELMKLDR- 207 (417)
T ss_dssp CCCEEEEEGGGEEEEEC---------------CGGGCC----------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-
T ss_pred ccCcccccCCccccccc---------------CHHHhc----------cccCceEEEECCCCCCCCCccCHHHHHHHHH-
Confidence 234455555432 1122 344443 2467899999999999999999554444443
Q ss_pred CccccccCCCCCCCeEEEEeccccCCCCCC-----CCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhcccccc
Q 010538 230 PERILEISPFSKGRWMVLIDAAKGCVTQPP-----DLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFS 302 (508)
Q Consensus 230 ~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-----d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g 302 (508)
+|+++|+++|+|++|+...... .....+.++++.|+|| ++ ++| +|++++++++++.+......
T Consensus 208 --------~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~-~~G~r~G~~~~~~~~~~~~~~~~~~ 277 (417)
T 3g7q_A 208 --------LANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LG-LPGSRCGIIIANDKTITAIANMNGI 277 (417)
T ss_dssp --------HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GT-CTTSCCEEEECCHHHHHHHHHHHHH
T ss_pred --------HHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-cc-CCCcceEEEEeCHHHHHHHHHhhcc
Confidence 3334999999999997532221 1122367899999999 45 445 89999998887766543111
Q ss_pred CceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChH----H-HHHHHHHHHHHHHHHHhc-ccCCC
Q 010538 303 GGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVP----A-ICRHIASLGMYVRKVLLS-LRHEN 376 (508)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~----~-i~~~~~~l~~~l~~~L~~-l~~~~ 376 (508)
...+.+.....++.+.++ ...+. + ++++++++++++.+.|.+ ++.
T Consensus 278 ------------------------~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-- 328 (417)
T 3g7q_A 278 ------------------------ISLAPGGMGPAMMCEMIK---RNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSE-- 328 (417)
T ss_dssp ------------------------HCCCCCSHHHHHHHHHHH---TTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCT--
T ss_pred ------------------------eeeCCCcHHHHHHHHHHc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 112223333333333333 22222 2 566677788888888866 320
Q ss_pred CCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhc
Q 010538 377 GADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEA 456 (508)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~ 456 (508)
-++++..+.. +.++++.++... ++..++.+.|.++||.+++|..|..+... .
T Consensus 329 --~~~~~~~~~~--------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~~~~-----~---------- 380 (417)
T 3g7q_A 329 --ERCLIHKPEG--------AIFLWLWFKDLP---ITTELLYQRLKARGVLMVPGHYFFPGLDK-----P---------- 380 (417)
T ss_dssp --TTCEEECCCB--------SSEEEEECTTCS---SCHHHHHHHHHHTTEECEEGGGGCTTBSS-----C----------
T ss_pred --CCceeeCCCc--------ceEEEEEcCCCC---CCHHHHHHHHHHCCEEEECchhhCCCCcc-----c----------
Confidence 0366665543 788888886421 34456888899999999999877553200 0
Q ss_pred CCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 457 GHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
. ....+++|||++. |.++++++++.|.++++.+
T Consensus 381 ----------~-~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 381 ----------W-PHTHQCMRMNYVP--EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp ----------C-GGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred ----------c-ccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 0 0015799999995 9999999999999887654
No 152
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.93 E-value=3e-23 Score=213.99 Aligned_cols=355 Identities=12% Similarity=0.080 Sum_probs=229.3
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhc-----
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAF----- 123 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l----- 123 (508)
...+++.+++++.+.+. ..+ +. .....+++++.+++++|.+ ++++++|+|+|+++++.++
T Consensus 10 ~~~~~~~~~~a~~~~~~-~~~------~~----~~~~~~~l~~~la~~~~~~----~~i~~~sGt~a~~~al~~~~~~~~ 74 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLD-SKM------FT----MGEYVKQYETQFAKTFGSK----YAVMVSSGSTANLLMIAALFFTKK 74 (390)
T ss_dssp CCCCCHHHHHHHHHHHH-HTC------CS----SCHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHH-cCC------CC----CChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHHHhhhh
Confidence 44568888888765442 211 11 1345788999999999986 4677888889999999998
Q ss_pred -CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCC
Q 010538 124 -PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA 201 (508)
Q Consensus 124 -~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~ 201 (508)
..++|++|+++..+|+++...+. ..|++++.+|++.+ +.+ |+++++ +++ +++
T Consensus 75 ~~~~~g~~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i------~~~ 128 (390)
T 3b8x_A 75 PRLKKGDEIIVPAVSWSTTYYPLQ---QYGLRVKFVDIDINTLNI---------------DIESLK--EAV------TDS 128 (390)
T ss_dssp CSCCTTCEEEEESSSCHHHHHHHH---HTTCEEEEECBCTTTCSB---------------CHHHHH--HHC------CTT
T ss_pred cCCCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEecCccccCc---------------CHHHHH--HHh------CcC
Confidence 46788999999999988776544 46999999998754 444 688888 555 457
Q ss_pred ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCC--cEEEEe---cccc
Q 010538 202 YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPV--DFVVMS---FYKI 276 (508)
Q Consensus 202 t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~--D~~~~S---~~K~ 276 (508)
|++|++++ ++|...|+++|.++|++ +|+++|+|++|+.|..+ +....++ |+.++| +||+
T Consensus 129 ~~~v~~~~---~~g~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~ 192 (390)
T 3b8x_A 129 TKAILTVN---LLGNPNNFDEINKIIGG------------RDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHI 192 (390)
T ss_dssp EEEEEEEC---GGGCCCCHHHHHHHHTT------------SCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSS
T ss_pred CeEEEEEC---CccChhhHHHHHHHHHH------------cCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCC
Confidence 89998874 67999999999999998 99999999999988765 5554554 666654 3554
Q ss_pred ccCCCcceEEEEec-hhHhhhccccccC--ceEE-e---c--ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 277 FGYPTGLGALIMRN-DAAKLLKNTYFSG--GTVA-A---S--IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 277 ~g~P~G~G~l~~~~-~~~~~l~~~~~g~--~~~~-~---~--~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
.+ |.| |+++.++ ++.+.+++...++ .... . . .....+..........+..++.++...+++.. ++.
T Consensus 193 ~~-g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~-- 267 (390)
T 3b8x_A 193 AT-MEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKK-- 267 (390)
T ss_dssp CS-SSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHH--
T ss_pred cc-CCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH-HHH--
Confidence 44 556 8988887 5555555543322 1000 0 0 00000000000000112233556665555553 443
Q ss_pred hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCe
Q 010538 348 SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQ 427 (508)
Q Consensus 348 ~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~ 427 (508)
++++.++.+++++++.+.|+++ +++++..+... .....+++.++... ..+..++.+.|.++||.
T Consensus 268 ---l~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~~-----~~~~~~~i~~~~~~--~~~~~~l~~~L~~~gI~ 331 (390)
T 3b8x_A 268 ---LPRFISVRRKNAEYFLDKFKDH------PYLDVQQETGE-----SSWFGFSFIIKKDS--GVIRKQLVENLNSAGIE 331 (390)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTC------SSEEECCCCSB-----CCCCEEEEEECTTS--CCCHHHHHHHHHHTTBC
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCC------CCcccCCCCCC-----cccEEEEEEecCcC--cccHHHHHHHHHHCCCC
Confidence 4578888999999999999887 47887654311 01223555665211 13445689999999999
Q ss_pred ecc---CCCCCc-hHHHhhcCCChhhh-hhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 428 LRT---GCFCNP-GACAKYLGLSHSDL-LSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 428 v~~---g~~~~~-~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
++. |+.|.. +...+ .++. +.+|+.. .....+.+|++++.++|.+||+++++.|+
T Consensus 332 v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 332 CRPIVTGNFLKNTDVLKY-----FDYTVHNNVDNA----------EYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CBCSTTSSGGGCHHHHTT-----CEEEESSCCHHH----------HHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred eeeecCCchhhcchhhhc-----CCCCCcCCChHH----------HHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 997 555655 43210 0010 1112110 00124689999999999999999998863
No 153
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=7.1e-25 Score=227.85 Aligned_cols=348 Identities=15% Similarity=0.054 Sum_probs=220.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccc-cCCCCCccchhhhh-hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNV-YGNPHSQSDISLAT-CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+-|. ++..+++|.+++++.+.+...+ .+++...+..+... ....+.+++.+++++|++.. .++++|+++|+.+
T Consensus 34 ~i~l~-~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~v~~~~Gs~a~~~ 109 (425)
T 3ecd_A 34 QVELI-ASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHA---NVQPHSGAQANGA 109 (425)
T ss_dssp SEECC-TTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHH
T ss_pred ceeee-cccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCc---eeecCchHHHHHH
Confidence 34443 4455568888888755432221 23343333322222 23344567889999998754 4568888999999
Q ss_pred HHhhcCCCCCCeEEEecccccchH-HHHHHHHhcCC--eEEEEccCCc-cCccccccccccccccccchhhhhcCCCCCC
Q 010538 119 VGEAFPWSHQSSYMYTMENHNSVL-GIREYALSQGA--AAFAIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 119 ~~~~l~~~~g~~vl~~~~~h~s~~-~~~~~~~~~G~--~v~~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
++.++ .++|++|++....|++.. .... ....|. ++..++.+.+ ..+ |+++++ +++.
T Consensus 110 al~~~-~~~gd~Vi~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i~- 169 (425)
T 3ecd_A 110 VMLAL-AKPGDTVLGMSLDAGGHLTHGAK-PALSGKWFNALQYGVSRDTMLI---------------DYDQVE--ALAQ- 169 (425)
T ss_dssp HHHHH-CCTTCEEEEECC-------------------CEEEEECCCTTTSSC---------------CHHHHH--HHHH-
T ss_pred HHHHc-cCCCCEEEEcccccccceecchh-hhhcccceeeeecCCCcccCcc---------------CHHHHH--HHHh-
Confidence 99988 788999999998888732 2222 112243 5555665532 333 577787 4442
Q ss_pred CCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC-----CCCCCCCCCcEE
Q 010538 195 RDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ-----PPDLSKYPVDFV 269 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~-----~~d~~~~~~D~~ 269 (508)
.+++++|++++++| |...++++|.++|++ +|+++|+|++|+.|.. +..+. .+|++
T Consensus 170 ----~~~~~~v~~~~~~~--~~~~~l~~i~~l~~~------------~~~~li~De~~~~g~~~~~~~~~~~~--~~di~ 229 (425)
T 3ecd_A 170 ----QHKPSLIIAGFSAY--PRKLDFARFRAIADS------------VGAKLMVDMAHIAGVIAAGRHANPVE--HAHVV 229 (425)
T ss_dssp ----HHCCSEEEEECSCC--CSCCCHHHHHHHHHH------------HTCEEEEECGGGHHHHHTTSSCCGGG--TCSEE
T ss_pred ----hcCCcEEEEccccC--CCcCCHHHHHHHHHH------------cCCEEEEECcChHhhhhcccccCchh--cCcEE
Confidence 14678999987766 678999999999998 9999999999865432 11122 37999
Q ss_pred EEeccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 270 VMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 270 ~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
++|+||++++|.| |+++.++ .+.+.+.+....+ ..++++...++++..++..+.+
T Consensus 230 ~~s~sK~l~g~~~-g~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~a~~~~~~ 285 (425)
T 3ecd_A 230 TSTTHKTLRGPRG-GFVLTNDEEIAKKINSAVFPG-----------------------LQGGPLMHVIAGKAVAFGEALT 285 (425)
T ss_dssp EEESSGGGCCCSC-EEEEESCHHHHHHHHHHHC----------------------------CCCHHHHHHHHHHHHHHTS
T ss_pred EecCCcccCCCCc-EEEEeCCHHHHHHHHhhhCcc-----------------------ccCCccHHHHHHHHHHHHHHHH
Confidence 9999999877865 9999885 4544444432211 1235566667777777665544
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
.+++.+.++..++++++.+.|.+. ++++..+... ++++++.++... .+...+.+.|.++||.+
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v 348 (425)
T 3ecd_A 286 DDFKTYIDRVLANAQALGDVLKAG-------GVDLVTGGTD-------NHLLLVDLRPKG---LKGAQVEQALERAGITC 348 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT---CCHHHHHHHHHHTTEEC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhC-------CCeeccCCCC-------ceEEEEEeCCCC---CCHHHHHHHHHHcCCEe
Confidence 457889999999999999999885 6777765332 688888876421 23456888999999999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC----HHHHHHHHHhhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST----FEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t----~eev~~l~~~~~~~~~~~ 502 (508)
+.+..+.... .....+.+|++++.+++ +++++++++.|++.++..
T Consensus 349 ~~~~~p~~~~-----------------------------~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 349 NKNGIPFDPE-----------------------------KPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp EECCCTTCSS-----------------------------CTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCC-----------------------------CCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 8653211100 00124689999665554 999999999999887654
No 154
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.93 E-value=1.1e-23 Score=217.58 Aligned_cols=308 Identities=13% Similarity=0.039 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~v~~v~~~ 161 (508)
....+++++.+++++|++ + +++++|+++|+.+++.++ .++|++|+++...|+++...+ ..++..|++++.+|..
T Consensus 58 ~~~~~~l~~~la~~~g~~-~---~i~~~sG~~ai~~~~~~~-~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 132 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA-G---SAAFGSGMGAISSSTLAF-LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTS 132 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHTTT-CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred ChHHHHHHHHHHHHhCCC-e---EEEeCCHHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 456788999999999986 3 455566779999999988 688999999999998766543 3467789999999863
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||||.+.|+++|.++|++
T Consensus 133 --------------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~------------ 172 (389)
T 3acz_A 133 --------------------DVEKVK--AAW------KPNTKMVYLESPANPTCKVSDIKGIAVVCHE------------ 172 (389)
T ss_dssp --------------------CHHHHH--HTC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH------------
T ss_pred --------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCeecCHHHHHHHHHH------------
Confidence 367777 554 4578999999999999999999999999998
Q ss_pred CCeEEEEeccccCCC--CCCCCCCCCCcEEEEeccccccCCCc--ceEEEEec-hhHhhhccccccCceEEecccchhhh
Q 010538 242 GRWMVLIDAAKGCVT--QPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 242 ~g~~vivD~a~~~g~--~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++++|++++.+. .|++ .++|+++.|+||++++|.+ .|++++++ ++++.+.+....
T Consensus 173 ~~~~livD~~~~~~~~~~~~~---~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~-------------- 235 (389)
T 3acz_A 173 RGARLVVDATFTSPCFLKPLE---LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD-------------- 235 (389)
T ss_dssp HTCEEEEECTTTCTTTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--------------
T ss_pred cCCEEEEECCCccccccCccc---cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh--------------
Confidence 899999999998765 3443 5799999999999887876 49999998 887766544210
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYT 388 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~ 388 (508)
..++.+....+.+..+++. +....++..+.++.+.+.+++.+. ....++++++.+..
T Consensus 236 ----------~g~~~~~~~~~~~~~~l~~-----l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~ 300 (389)
T 3acz_A 236 ----------AGSLMAPMDAFLCARGMKT-----LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQM 300 (389)
T ss_dssp ----------HCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHC
T ss_pred ----------cCCCCCHHHHHHHHcCccH-----HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC
Confidence 1122333223322333332 344455666677777777766521 00011111111110
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeecc---C------CCCCchHHHhhcCCChhhhhhhhhcCCc
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRT---G------CFCNPGACAKYLGLSHSDLLSNIEAGHV 459 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~---g------~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 459 (508)
...+++++|.+++ . ..+.+.|.+.||.++. | +.|+..... . -+++.+..+|.
T Consensus 301 -----~g~g~~~~~~l~~--~-----~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~---~-~~~~~~~~~g~--- 361 (389)
T 3acz_A 301 -----TGYGSTFLFEMKS--F-----EAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHA---A-VPENIMRKQGI--- 361 (389)
T ss_dssp -----SSCCSEEEEEESS--H-----HHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTS---S-SCHHHHHHHTC---
T ss_pred -----CCCCeEEEEEECC--H-----HHHHHHHHhCCCcEECcCCCCcccEeeCCcccccc---c-CCHHHHHhcCC---
Confidence 0137899999864 1 2477888889998877 5 666553210 0 12234445543
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.++.||+|++..++++.++.+.+++..
T Consensus 362 -----------~~~~iRlsvg~~~~~~li~~l~~al~~ 388 (389)
T 3acz_A 362 -----------TPELVRISVGIENVDDIIADLKQALEL 388 (389)
T ss_dssp -----------CTTEEEEECCSSCHHHHHHHHHHHHTC
T ss_pred -----------CcCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 268999999999999988888887653
No 155
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.93 E-value=3.1e-24 Score=222.17 Aligned_cols=318 Identities=11% Similarity=0.007 Sum_probs=218.4
Q ss_pred cchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HHHHhcCCe
Q 010538 76 SDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EYALSQGAA 154 (508)
Q Consensus 76 ~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~~~~~G~~ 154 (508)
+..+.......+++++.+++++|.+ ++++++|+++|+++++.++ .++|++|+++...|+++.... ..++..|++
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~~----~~~~~~sGt~A~~~al~~~-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~ 132 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDAA----FGRAFSSGMAAADCALRAM-LRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence 3334444566888999999999986 4788888899999999988 688999999999998776654 344667999
Q ss_pred EEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccc
Q 010538 155 AFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 155 v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
+..+|.+ |+++++ +++ .++|++|++++++|+||.+.|+++|.++|++
T Consensus 133 ~~~v~~~--------------------d~~~l~--~~i------~~~~~~v~~~~~~nptG~~~~l~~i~~la~~----- 179 (392)
T 3qhx_A 133 YTPVALA--------------------DLDAVR--AAI------RPTTRLIWVETPTNPLLSIADIAGIAQLGAD----- 179 (392)
T ss_dssp EEEECTT--------------------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH-----
T ss_pred EEEeCCC--------------------CHHHHH--Hhh------CCCCeEEEEECCCCCCcEEecHHHHHHHHHH-----
Confidence 9999874 256677 444 4689999999999999999999999999998
Q ss_pred ccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc---ceEEEEec-hhHhhhccccccCceEEecc
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG---LGALIMRN-DAAKLLKNTYFSGGTVAASI 310 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~ 310 (508)
+|+++|+|++|+.+.. .+....++|+++.|+||++| +.| .|+++.++ ++.+.+.....
T Consensus 180 -------~g~~li~D~~~~~~~~-~~~~~~~~di~~~S~sK~lg-~~g~~~~G~v~~~~~~~~~~l~~~~~--------- 241 (392)
T 3qhx_A 180 -------SSAKVLVDNTFASPAL-QQPLSLGADVVLHSTTKYIG-GHSDVVGGALVTNDEELDQSFAFLQN--------- 241 (392)
T ss_dssp -------HTCEEEEECTTTCTTT-CCGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHHH---------
T ss_pred -------cCCEEEEECCCccccc-CChHHhCCcEEEEcCccccC-CCCCceEEEEEECcHHHHHHHHHHHH---------
Confidence 8999999999986633 23335589999999999999 444 78888874 55544433211
Q ss_pred cchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCC
Q 010538 311 ADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTS 389 (508)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~ 389 (508)
....+.+....+.+...++. +....++..++++++.+.|++.+ .+. +..|.-.
T Consensus 242 ---------------~~g~~~~~~~~~~~~~~l~~-----l~~~~~~~~~~~~~l~~~L~~~~------~v~~v~~p~l~ 295 (392)
T 3qhx_A 242 ---------------GAGAVPGPFDAYLTMRGLKT-----LVLRMQRHSENAAAVAEFLAEHP------AISTVLYPGLP 295 (392)
T ss_dssp ---------------HHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTST
T ss_pred ---------------hcCCCCCHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHhcCC------CcceEECCCCC
Confidence 01122333323322223332 45556777888888888888763 453 3333211
Q ss_pred Cccc---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhh-hhcCCc
Q 010538 390 EVSY---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSN-IEAGHV 459 (508)
Q Consensus 390 ~~~~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~-~~~~~~ 459 (508)
. .+ ...+++++|.+++.. .....+...|+..|+.++.|..|+.... +. ...++.+... +
T Consensus 296 ~-~~~~~~~~~~~~g~g~~~~~~l~~~~---~~~~~~~~~l~~~~~~~s~G~~~sl~~~-~~-~~~~~~~~~~~~----- 364 (392)
T 3qhx_A 296 S-HPGHAVAARQMRGFGGMVSVRMRAGR---TAAEQLCAKTNIFILAESLGSVESLIEH-PS-AMTHASTAGSQL----- 364 (392)
T ss_dssp T-STTHHHHHHHCSSCCSEEEEEETTCH---HHHHHHHHHCSSSEECSCCCCSSCEEEC-GG-GTSCGGGBTTBC-----
T ss_pred C-CCCHHHHHHhCCCCceEEEEEeCCcH---HHHHHHHHhCCCceECCCCCCCCceeeC-cc-cccccccCHHHc-----
Confidence 0 00 012789999997521 1123466677778899999987754210 00 0012222221 1
Q ss_pred cCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 460 CWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 460 ~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+..++.||+|++..+++++++.+.++|
T Consensus 365 ---------g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 365 ---------EVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp ---------CCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ---------CCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 224789999999999999999988876
No 156
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.92 E-value=8e-24 Score=219.13 Aligned_cols=358 Identities=13% Similarity=0.061 Sum_probs=226.2
Q ss_pred eeeeCCCCCC-CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHH
Q 010538 42 VYLDHAGATL-YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVG 120 (508)
Q Consensus 42 iyld~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~ 120 (508)
-|+|.....+ .++.+.+++.+.+... .+.. .....++++.++++++.+ ++++++|+|+|+.+++
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-------~y~~----~~~~~~l~~~la~~~~~~----~~v~~~~Gt~a~~~~l 95 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-------RYLL----GPELEGFEAEFAAYCETD----HAVGVNSGMDALQLAL 95 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-------CCSS----SHHHHHHHHHHHHHTTSS----EEEEESCHHHHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-------CCCC----chhHHHHHHHHHHHHCCC----eEEEecCHHHHHHHHH
Confidence 4555543332 2366777665543211 1111 244678899999999986 4677888899999999
Q ss_pred hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 121 EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 121 ~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
.++..++|++|+++...|+++... ++..|++++.+|.+. ...+ |+++++ +++ +
T Consensus 96 ~~~~~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~---------------d~~~l~--~~i------~ 149 (399)
T 2oga_A 96 RGLGIGPGDEVIVPSHTYIASWLA---VSATGATPVPVEPHEDHPTL---------------DPLLVE--KAI------T 149 (399)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHHH---HHHTTCEEEEECBCSSSSSB---------------CHHHHH--HHC------C
T ss_pred HHhCCCCcCEEEECCCccHHHHHH---HHHCCCEEEEEecCCCCCCc---------------CHHHHH--Hhc------C
Confidence 998557889999999888876544 445699999999875 2334 688888 555 3
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCC--CcEEEEecc--c
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFY--K 275 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~--K 275 (508)
+++++|+ ++|+||.+.|+++|.++|++ +|+++|+|++|+.|... +....+ .|++++|+| |
T Consensus 150 ~~~~~v~---~~n~tG~~~~l~~i~~l~~~------------~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK 213 (399)
T 2oga_A 150 PRTRALL---PVHLYGHPADMDALRELADR------------HGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGK 213 (399)
T ss_dssp TTEEEEC---CBCGGGCCCCHHHHHHHHHH------------HTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTS
T ss_pred CCCeEEE---EeCCcCCccCHHHHHHHHHH------------cCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCc
Confidence 4678877 46789999999999999998 89999999999987542 333333 699999995 9
Q ss_pred cccCCCc-ceEEEEe-chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHH
Q 010538 276 IFGYPTG-LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPA 353 (508)
Q Consensus 276 ~~g~P~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~ 353 (508)
+++ |.| .|+++.+ +++++.+.+....+... .|. ..... ...+.+....+++.++++.+ +.
T Consensus 214 ~~~-~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-------~~~----~~~~g-~~~~~~~~~~a~~~~~l~~~-----~~ 275 (399)
T 2oga_A 214 NLG-CFGDGGAVVTGDPELAERLRMLRNYGSRQ-------KYS----HETKG-TNSRLDEMQAAVLRIRLAHL-----DS 275 (399)
T ss_dssp SSC-CSSCCEEEEESCHHHHHHHHHHHBTTCSS-------TTC----CCSCC-CBCCCCHHHHHHHHHHHHTH-----HH
T ss_pred cCC-cCCceEEEEeCCHHHHHHHHHHHhcCccc-------ccc----ccccc-cCCCcCHHHHHHHHHHHHHH-----HH
Confidence 999 544 6788876 67766665543222110 000 00000 01234455555555555543 45
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCC
Q 010538 354 ICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCF 433 (508)
Q Consensus 354 i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 433 (508)
+.++..++++++.+.|.+++ ++++...+.. ....++.|.+... +..++.+.|.++||.++.+..
T Consensus 276 ~~~~~~~~~~~l~~~L~~~~------g~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~ 339 (399)
T 2oga_A 276 WNGRRSALAAEYLSGLAGLP------GIGLPVTAPD-----TDPVWHLFTVRTE-----RRDELRSHLDARGIDTLTHYP 339 (399)
T ss_dssp HHHHHHHHHHHHHHHTTTCT------TCBCCCCCTT-----EECCCSSEEEECS-----SHHHHHHHHHHTTBCCBCSCS
T ss_pred HHHHHHHHHHHHHHHhccCC------CccccCCCCC-----CcceeEEEEEECC-----CHHHHHHHHHHCCCceecCCC
Confidence 67788888999999998873 5655432221 0011223444332 234588899999999987531
Q ss_pred CCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 434 CNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 434 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+... .++...+|...... +. ......+.+||+++.++|.+|+++++++|+++++-+
T Consensus 340 -~~~~~--------~~~~~~~~~~~~~~-p~--~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 340 -VPVHL--------SPAYAGEAPPEGSL-PR--AESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp -SCGGG--------SHHHHTTSCCTTSC-HH--HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred -Ccccc--------chhhcccCCCCCCC-hh--HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11000 01111111100000 00 000013789999999999999999999999887543
No 157
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.92 E-value=4.5e-24 Score=220.72 Aligned_cols=334 Identities=11% Similarity=0.040 Sum_probs=223.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+++++.+|+++|. + ++++|+|+|+|+++++.++..++|++|+++...|+++...+.. .|++++.+|.+.+
T Consensus 32 ~~~~~l~~~la~~~~~--~--~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~ 104 (394)
T 1o69_A 32 EFVNRFEQSVKDYSKS--E--NALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICY---LKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHHCC--S--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH---TTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHHhCC--C--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHH---cCCEEEEEEeCCC
Confidence 3577899999999998 4 7999999999999999998567889999999999998765543 6999999998755
Q ss_pred cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCC
Q 010538 164 VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGR 243 (508)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g 243 (508)
+.+ |+++++ +++.+. .+++++|++++ ++|...|+++|.++|++ +|
T Consensus 105 ~~~---------------d~~~l~--~~i~~~---~~~~~~v~~~~---~~G~~~~l~~i~~l~~~------------~~ 149 (394)
T 1o69_A 105 YNI---------------DVDLLK--LAIKEC---EKKPKALILTH---LYGNAAKMDEIVEICKE------------ND 149 (394)
T ss_dssp SSB---------------CHHHHH--HHHHHC---SSCCCEEEEEC---GGGCCCCHHHHHHHHHH------------TT
T ss_pred CCc---------------CHHHHH--HHHhcc---cCCceEEEEEC---CCCChhhHHHHHHHHHH------------cC
Confidence 445 577777 554210 12678998875 79999999999999998 89
Q ss_pred eEEEEeccccCCCCCCCCC--C-CCCcEEEEeccccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhhhc
Q 010538 244 WMVLIDAAKGCVTQPPDLS--K-YPVDFVVMSFYKIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 244 ~~vivD~a~~~g~~~~d~~--~-~~~D~~~~S~~K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+++|+|++|+.|....+.. . .++|++++|.||.++ |.++|+++++ +++++.+.+....+.. .. ..+
T Consensus 150 ~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~----~~-~~~---- 219 (394)
T 1o69_A 150 IVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARE----NC-LHY---- 219 (394)
T ss_dssp CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCC----SS-SSC----
T ss_pred CEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccc----cC-ccc----
Confidence 9999999999765443321 1 357888889999998 7679999996 6777766554222110 00 000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
.....++..++++....+++.. +++ ++++.++.+++++++.+.|+++ ++++.+.... ....++
T Consensus 220 ~~~~~g~~~~~~~~~aa~~l~~-l~~-----l~~~~~~~~~~~~~l~~~L~~~--------~~~~~~~~~~---~~~~~~ 282 (394)
T 1o69_A 220 EHLDYGYNYRLSNVLGAIGVAQ-MEV-----LEQRVLKKREIYEWYKEFLGEY--------FSFLDELENS---RSNRWL 282 (394)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHH-HTT-----HHHHHHHHHHHHHHHHHHHTTT--------EECCCCCTTE---ECCCSS
T ss_pred cccccCcccCcCHHHHHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHhccc--------ccccCCCCCC---cceeEE
Confidence 1123344555666666555542 333 4567788999999999999763 4444332110 001236
Q ss_pred EEEEeeCCC-----------------CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 400 VSFNLKRPD-----------------GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 400 v~~~~~~~~-----------------~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
+++.++... ...++..++.+.|.++||.+++|..|... ++.+ ..++.. +-
T Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~--~p~~--------~~~~~~---~~ 349 (394)
T 1o69_A 283 STALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHT--QEVF--------KGAKAY---LN 349 (394)
T ss_dssp EEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGG--CGGG--------TTCEEE---EC
T ss_pred EEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCcccc--chhh--------hccCCC---CC
Confidence 778875310 00123456889999999999998655221 0011 000000 00
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.. .......+|+..+.++|.+|+++++++|+++++-
T Consensus 350 ~~~--~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 350 GNS--ELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp SHH--HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred hHH--HHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 000 0001256777779999999999999999987643
No 158
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=230.76 Aligned_cols=312 Identities=12% Similarity=-0.019 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHc-CC--CCCCceEEEcCChHHHHHHHHhhcCCCCC----CeEEEecccccchHHHHHHHHhcCCeEE
Q 010538 84 DIVRAAREQVLDYF-NA--SMKDYKCIFTSGATAALKLVGEAFPWSHQ----SSYMYTMENHNSVLGIREYALSQGAAAF 156 (508)
Q Consensus 84 ~~~~~~r~~la~~~-~~--~~~~~~i~~t~g~t~al~~~~~~l~~~~g----~~vl~~~~~h~s~~~~~~~~~~~G~~v~ 156 (508)
.+.+++.+.+++.. |. +++ +|++|+|+++|+.+++.++ ..+| +.|+++...|+++.... +..|.+++
T Consensus 133 ~lr~~ia~~~~~~~gG~~~~~~--~i~~t~G~~~ai~~~~~~l-~~~gd~~~d~Vlv~~p~y~~~~~~~---~~~g~~~v 206 (498)
T 3ihj_A 133 CIREDVAAYITRRDGGVPADPD--NIYLTTGASDGISTILKIL-VSGGGKSRTGVMIPIPQYPLYSAVI---SELDAIQV 206 (498)
T ss_dssp HHHHHHHHHHHHHTTTCCCCGG--GEEEESSHHHHHHHHHHHH-CCCCGGGSEEEEEEESCCTHHHHHH---HHTTCEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCcc--cEEEcCCHHHHHHHHHHHH-cCCCCCCCCEEEEeCCCchhHHHHH---HHcCCEEE
Confidence 34444444444444 34 566 8999999999999999998 4555 49999998888766554 44699999
Q ss_pred EEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccccc
Q 010538 157 AIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEI 236 (508)
Q Consensus 157 ~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~ 236 (508)
.++.+.+..+ .+|+++++ +++++.. ...++++|++++++||||.+++.+.+.++++
T Consensus 207 ~~~~~~~~~~-------------~~d~~~le--~~l~~~~-~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~-------- 262 (498)
T 3ihj_A 207 NYYLDEENCW-------------ALNVNELR--RAVQEAK-DHCDPKVLCIINPGNPTGQVQSRKCIEDVIH-------- 262 (498)
T ss_dssp EEECBGGGTT-------------BCCHHHHH--HHHHHHT-TTSEEEEEEEESSCTTTCCCCCHHHHHHHHH--------
T ss_pred EeeccccccC-------------CCCHHHHH--HHHHhhh-ccCCCeEEEEECCCCCCCCcCCHHHHHHHHH--------
Confidence 9998764322 12677777 5553211 0126899999999999999999887666665
Q ss_pred CCCCCCCeEEEEeccccCCCC-----CCCCCCC----------CC-cEEEEeccccccCCCc--ceEEEE---echhHhh
Q 010538 237 SPFSKGRWMVLIDAAKGCVTQ-----PPDLSKY----------PV-DFVVMSFYKIFGYPTG--LGALIM---RNDAAKL 295 (508)
Q Consensus 237 ~~~~~~g~~vivD~a~~~g~~-----~~d~~~~----------~~-D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~ 295 (508)
+|+++|+++|+|++|+.... ..++... ++ .+++.|+||.|.|++| +||+++ ++++++.
T Consensus 263 -la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~ 341 (498)
T 3ihj_A 263 -FAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQ 341 (498)
T ss_dssp -HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHH
T ss_pred -HHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHH
Confidence 45559999999999975332 2222211 12 2677899998832556 799884 6666665
Q ss_pred hccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHH-----------HHHhcChHHHHHHHHHHHHH
Q 010538 296 LKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFN-----------LINSLTVPAICRHIASLGMY 364 (508)
Q Consensus 296 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~-----------~~~~~g~~~i~~~~~~l~~~ 364 (508)
+.... . ...+++....+++..+++ ++.. ...+.+++.+++++
T Consensus 342 l~~~~------------------------~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~--~~~~~~~l~~~~~~ 394 (498)
T 3ihj_A 342 LVKLL------------------------S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSRE--KESVLGNLAKKAKL 394 (498)
T ss_dssp HHHHH------------------------H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH------------------------h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHH--HHHHHHHHHHHHHH
Confidence 54321 0 112345555556555542 2222 46778889999999
Q ss_pred HHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC-------CccCHHH--HHHHHhhCCCeeccCCCCC
Q 010538 365 VRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-------SWFGYRE--VEKLASLSGIQLRTGCFCN 435 (508)
Q Consensus 365 l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~--l~~~L~~~gI~v~~g~~~~ 435 (508)
+.+.|+++ +++++..+.+ +.++++++..... ..++... +.++|+++||.+.+|..|.
T Consensus 395 l~~~L~~~------~g~~~~~p~g--------g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~ 460 (498)
T 3ihj_A 395 TEDLFNQV------PGIHCNPLQG--------AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFG 460 (498)
T ss_dssp HHHHHHTS------TTEECCCCCB--------SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTC
T ss_pred HHHHHhcC------CCcEecCCCe--------EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccC
Confidence 99999987 4788776543 4556555532100 0122223 4677888999999998775
Q ss_pred chHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 436 PGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 436 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
... ..+.+|+|+. .+.++++.+++.|+++++.
T Consensus 461 ~~~--------------------------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 461 QRE--------------------------------GTYHFRMTIL--PPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CCT--------------------------------TCCBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCC--------------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 421 2568999995 7999999999999988753
No 159
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.92 E-value=1.3e-22 Score=210.90 Aligned_cols=314 Identities=15% Similarity=0.051 Sum_probs=208.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++.+++++|.+ ++++++|+++|+.+++.++ .++|++|+++...|+++...+. .++..|++++.+|.+
T Consensus 61 ~~~~~~l~~~ia~~~g~~----~~i~~~~g~~ai~~~~~~l-~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 135 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE----ACVATSSGMGAIAATVLTI-LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA 135 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHHH-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred ChHHHHHHHHHHHHhCCC----cEEEeCChHHHHHHHHHHH-hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 455778999999999985 3566666789999999988 6789999999999988766433 466789999999875
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+ +++++ +++ .++|++|++++++||||.++|+++|.++|++ .
T Consensus 136 ---d-----------------~~~l~--~~i------~~~t~~v~l~~p~NptG~v~~l~~i~~la~~--------~--- 176 (404)
T 1e5e_A 136 ---I-----------------PGEVK--KHM------KPNTKIVYFETPANPTLKIIDMERVCKDAHS--------Q--- 176 (404)
T ss_dssp ---S-----------------TTHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHT--------S---
T ss_pred ---C-----------------HHHHH--Hhc------CCCCcEEEEECCCCCCCcccCHHHHHHHHHh--------h---
Confidence 1 34555 333 4578999999999999999999999999984 0
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHh-hhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++++|++|+.+.....+ ..++|+++.|+||++++|.+ .|+++++++.++ .+.+...++
T Consensus 177 ~~~~li~De~~~~~~~~~~~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~--------------- 240 (404)
T 1e5e_A 177 EGVLVIADNTFCSPMITNPV-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI--------------- 240 (404)
T ss_dssp TTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC---------------
T ss_pred cCCEEEEECCCchhhhCCcc-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC---------------
Confidence 69999999999987633222 35799999999999987865 499999998876 665542211
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccC--------CCCCceEEEecCCCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRH--------ENGADVCTIYGTYTSE 390 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~--------~~~~~~~~~~~~~~~~ 390 (508)
..++.+....++...+++. .+...++..+..+.+.+.+++.+. ....|+++++.+..
T Consensus 241 --------~g~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~-- 305 (404)
T 1e5e_A 241 --------TGSVISPHDAWLITRGLST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM-- 305 (404)
T ss_dssp --------CCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHC--
T ss_pred --------CCCCCCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhC--
Confidence 0123343334444444432 344555566677777777766520 00011222222111
Q ss_pred cccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccC---------CCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 391 VSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTG---------CFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 391 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g---------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
...+++++|++++. ...+.+.+.+.||.+... ++|+..... .-++..+...|.
T Consensus 306 ---~~~g~~~~~~~~~~------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~----~~~~~~~~~~g~----- 367 (404)
T 1e5e_A 306 ---RMYGSMITFILKSG------FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHA----VVPKEEREAAGI----- 367 (404)
T ss_dssp ---SSCCSEEEEEETTH------HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTT----TSCHHHHHHTTC-----
T ss_pred ---CCCceEEEEEeCCC------HHHHHHHHHhCCCceeccCCCCcceeeecccccccc----cCCHHHHHhcCC-----
Confidence 01378899987542 123677888899954431 223321100 001111222222
Q ss_pred CCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.++.+|+|++. ||++.+++.|++.++.+
T Consensus 368 ---------~~~~iRis~g~----e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 368 ---------TDGMIRLSVGI----EDADELIADFKQGLDAL 395 (404)
T ss_dssp ---------CTTEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred ---------CCCeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence 25899999997 88888888888876543
No 160
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.92 E-value=5.9e-24 Score=236.72 Aligned_cols=321 Identities=12% Similarity=0.031 Sum_probs=230.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+...++.+++++|.+. .+++++|+++|+++++.++ .++|+.|+++...|+++...+.. .|++++.++.+.
T Consensus 204 ~g~v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al-~~~GD~Vlv~~~~h~s~~~~~~~---~G~~~v~v~~~~ 276 (755)
T 2vyc_A 204 TGAFGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQAC-MTDNDVVVVDRNCHKSIEQGLML---TGAKPVYMVPSR 276 (755)
T ss_dssp CHHHHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHHHHHHHHH---HCCEEEEECCCB
T ss_pred ccHHHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHH---cCCEEEEEeCCC
Confidence 3457788999999999973 5888999999999999998 68899999999999998776544 599999998753
Q ss_pred c--c---CccccccccccccccccchhhhhcCCCCCCC-C---CCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccc
Q 010538 163 A--V---DNDGLSESLVTSTKISLLPIQRRKGASFPER-D---PAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERI 233 (508)
Q Consensus 163 ~--~---~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~-~---~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~ 233 (508)
+ + .++ .=..|+++++ +++++. . ....++++++++++ |++|.+.|+++|.++|++
T Consensus 277 ~~~g~~g~i~----------~~~~d~e~le--~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~---- 339 (755)
T 2vyc_A 277 NRYGIIGPIY----------PQEMQPETLQ--KKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEK---- 339 (755)
T ss_dssp CTTSCBCCCC----------GGGGSHHHHH--HHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTT----
T ss_pred CccccccccC----------cCCCCHHHHH--HHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHH----
Confidence 2 1 110 0001467776 555321 0 01234458999986 799999999999999998
Q ss_pred cccCCCCCCCeEEEEeccccCCCC--CC--CCCC-CC--CcE------EEEeccccccCCCcceEEEEech--hHhhhcc
Q 010538 234 LEISPFSKGRWMVLIDAAKGCVTQ--PP--DLSK-YP--VDF------VVMSFYKIFGYPTGLGALIMRND--AAKLLKN 298 (508)
Q Consensus 234 ~~~~~~~~~g~~vivD~a~~~g~~--~~--d~~~-~~--~D~------~~~S~~K~~g~P~G~G~l~~~~~--~~~~l~~ 298 (508)
+|+++++|++|+.+.. +. +... .+ +|+ ++.|+||++++|.|.|+++++++ .+....
T Consensus 340 --------~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~- 410 (755)
T 2vyc_A 340 --------TSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSR- 410 (755)
T ss_dssp --------TCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHH-
T ss_pred --------cCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHH-
Confidence 9999999999975311 10 1111 34 566 99999999988887899998876 211000
Q ss_pred ccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 299 TYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
+. .....+..+++++..++++.+|++++...|.+++.+++.++++++++.|++++
T Consensus 411 ----------------~~----~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~----- 465 (755)
T 2vyc_A 411 ----------------FN----QAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY----- 465 (755)
T ss_dssp ----------------HH----HHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ----------------HH----HHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 00 01234567889999999999999988776567888999999999999998873
Q ss_pred ce---------EEEecCCCCCc--------------------------------------ccC---CCCceEEEEeeCC-
Q 010538 379 DV---------CTIYGTYTSEV--------------------------------------SYH---DTGSMVSFNLKRP- 407 (508)
Q Consensus 379 ~~---------~~~~~~~~~~~--------------------------------------~~~---~~~~~v~~~~~~~- 407 (508)
+ ++++++..... ... --...++|.+++.
T Consensus 466 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~ 544 (755)
T 2vyc_A 466 -KEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMG 544 (755)
T ss_dssp -HHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBC
T ss_pred -ccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCC
Confidence 5 66766542100 000 0124677777642
Q ss_pred -CC----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 408 -DG----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 408 -~~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
++ ..++...+.+.|+++||.+... ..+.+|++++++
T Consensus 545 ~~G~~~~~g~~~~~l~~~L~~~gI~~e~~---------------------------------------~~~~v~~~~~~g 585 (755)
T 2vyc_A 545 EDGELEETGVPAALVTAWLGRHGIVPTRT---------------------------------------TDFQIMFLFSMG 585 (755)
T ss_dssp TTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------------------------------------CSSEEEEECCTT
T ss_pred CCCCccccCCcHHHHHHHHHHCCCEEeec---------------------------------------CCCeEEEEECCC
Confidence 22 1245567999999999987531 157899999999
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
+|.+++++|+++|.+|.+.
T Consensus 586 ~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 586 VTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp CCTTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998654
No 161
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.92 E-value=5.5e-24 Score=221.38 Aligned_cols=299 Identities=10% Similarity=-0.013 Sum_probs=202.1
Q ss_pred HHHHHHHHHHc----CCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 87 RAAREQVLDYF----NASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 87 ~~~r~~la~~~----~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
.++++.+++++ +.+..+ +|++|+|+++|+.+++.++ ..+|++|+++...|+++.. .++..|.+++.+|++.
T Consensus 83 ~~lr~~ia~~~~~~~~~~~~~-~i~~t~g~~~al~~~~~~l-~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 83 PDFLCAAEKECFGNFRPEGHI-RSIATAGGTGGIHHLIHNY-TEPGDEVLTADWYWGAYRV---ICSDTGRTLVTYSLFD 157 (418)
T ss_dssp HHHHHHHHHHHHGGGCCSSEE-EEEEESHHHHHHHHHHHHH-SCTTCEEEEESSCCTHHHH---HHHHTTCEEEEECSBC
T ss_pred HHHHHHHHHHHhcccCccccc-cEEECCchHHHHHHHHHHh-cCCCCEEEECCCCchhHHH---HHHHcCCEEEEEeeeC
Confidence 34455555544 433211 6999999999999999998 6889999999877766554 4455799999999853
Q ss_pred -ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCce-EEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 163 -AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYN-LFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 163 -~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~-lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
+..+ |++.++ +++.+. ..++++ +++++++ +||||.++|.+++.++++ +|
T Consensus 158 ~~~~~---------------d~~~l~--~~l~~~--~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~---------~~ 209 (418)
T 3rq1_A 158 EHNNF---------------NHEAFQ--NRVNEL--AAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILN---------FL 209 (418)
T ss_dssp TTSSB---------------CHHHHH--HHHHHH--HHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH---------HH
T ss_pred CCCCc---------------CHHHHH--HHHHHh--hccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH---------HH
Confidence 3344 577777 444210 001345 8888888 999999999998888887 44
Q ss_pred C------CCCeEEEEeccccCCCCC--------CCCCCCCCc---EEEEeccccccCCCc--ceEEEE---echhHhhhc
Q 010538 240 S------KGRWMVLIDAAKGCVTQP--------PDLSKYPVD---FVVMSFYKIFGYPTG--LGALIM---RNDAAKLLK 297 (508)
Q Consensus 240 ~------~~g~~vivD~a~~~g~~~--------~d~~~~~~D---~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~ 297 (508)
+ ++|+++|+|++|...... ......+.| +++.|+||.+| ++| +|++++ ++++++.+.
T Consensus 210 ~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~ 288 (418)
T 3rq1_A 210 KDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFT-MYGQRVGAMIGISDDEEIADEFF 288 (418)
T ss_dssp HHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTT-CCSSCCEEEEEEESSHHHHHHHH
T ss_pred HHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-CcCCcceEEEEEeCCHHHHHHHH
Confidence 4 599999999997531110 011112233 78889999998 556 799998 788777665
Q ss_pred cccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHH------HhcChHHHHHHHHHHHHHHHHHHhc
Q 010538 298 NTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLI------NSLTVPAICRHIASLGMYVRKVLLS 371 (508)
Q Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~------~~~g~~~i~~~~~~l~~~l~~~L~~ 371 (508)
..... ..+....+++.....++..+++.. .+ ..+.+++++.++++++.+.|++
T Consensus 289 ~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 347 (418)
T 3rq1_A 289 EVNKS--------------------TSRATWSNICRPAMRTMANIVADPAKFKEYEA-ERNCYYQLIRDRADIFKQEAAQ 347 (418)
T ss_dssp HHHHH--------------------HHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------HHhhccCCCchHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 43100 000011234555555555454321 11 2456778888999999999987
Q ss_pred ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhh
Q 010538 372 LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLL 451 (508)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~ 451 (508)
+ +++++.+.. +.++++.+. +..++.+.|.++||.+++|
T Consensus 348 ~-------g~~~~~~~~--------~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g-------------------- 385 (418)
T 3rq1_A 348 V-------GLPMLPYRG--------GFFITIPTD-------SANAICEELKKEHIYVIAL-------------------- 385 (418)
T ss_dssp H-------TCCCCCCCS--------SSEEEEECT-------THHHHHHHHHHTTEECEEC--------------------
T ss_pred c-------CCCCCCCCc--------eEEEEcCCC-------CHHHHHHHHHhCCEEEecC--------------------
Confidence 6 466554432 456665553 2245788899999999885
Q ss_pred hhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 452 SNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
.+++|||++ ..|.++++++++.|+++++.++
T Consensus 386 --------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 386 --------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp --------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHTT
T ss_pred --------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHHh
Confidence 357999987 5699999999999999886554
No 162
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.92 E-value=1.1e-24 Score=234.46 Aligned_cols=365 Identities=15% Similarity=0.124 Sum_probs=225.7
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-C---CC-CCCceEEEcCChHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-N---AS-MKDYKCIFTSGATAA 115 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~---~~-~~~~~i~~t~g~t~a 115 (508)
.+.|..+.....++.+++++.+......+..|... ...+.+.+.+.+++.. + .. ++ +|++|+|+|+|
T Consensus 105 ~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g------~~~lr~~ia~~l~~~~~~~~~~~~~~--~i~~t~G~t~a 176 (533)
T 3f6t_A 105 AVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRC------LVNTEKIINYFLQELSYKDANLAEQT--DLFPTEGGTAA 176 (533)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSC------CHHHHHHHHHHHHHHHTTTCCCGGGE--EEEEEEHHHHH
T ss_pred heeccCCCCCcCCcHHHHHHHHHHHhCCCCCCccc------HHHHHHHHHHHHHHhcCCCCCCCCcc--eEEEECCHHHH
Confidence 45566666665677888877766653322222211 2233333444443331 2 22 34 89999999999
Q ss_pred HHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC----ccCccccccccccccccccchhhhh
Q 010538 116 LKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE----AVDNDGLSESLVTSTKISLLPIQRR 187 (508)
Q Consensus 116 l~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~----~~~~~~l~~~~~~~~~~~~d~~~l~ 187 (508)
+.+++.++ ...+|++|+++...|+++... ++..|.+++.++++. +..+ |+++++
T Consensus 177 l~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~~~---------------d~~~l~ 238 (533)
T 3f6t_A 177 IVYAFHSLAENHLLKKGDKIAINEPIFTPYLRI---PELKDYELVEVDLHSYEKNDWEI---------------EPNEIE 238 (533)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTS---GGGGGSEEEEECCCEETTTTSEE---------------CHHHHH
T ss_pred HHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHH---HHHcCCeEEEEEecCCcccCCCC---------------CHHHHH
Confidence 99999982 268899999999888766544 334588999998863 1222 678888
Q ss_pred cCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC-CCCeEEEEeccccCCCC-CCCCCC--
Q 010538 188 KGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS-KGRWMVLIDAAKGCVTQ-PPDLSK-- 263 (508)
Q Consensus 188 ~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~-~~g~~vivD~a~~~g~~-~~d~~~-- 263 (508)
+++ ++++++|++++++||||.++|.+++.++++ +|+ ++|+++|+|++|+.... ..++..
T Consensus 239 --~~l------~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~---------la~~~~~~~li~De~y~~~~~~~~~~~~~~ 301 (533)
T 3f6t_A 239 --KLK------DPSIKALIVVNPTNPTSKEFDTNALNAIKQ---------AVEKNPKLMIISDEVYGAFVPNFKSIYSVV 301 (533)
T ss_dssp --HHS------CTTEEEEEEESSCTTTCBCCCHHHHHHHHH---------HHHHCTTCEEEEECTTGGGSTTCCCHHHHS
T ss_pred --HHh------CCCCeEEEEeCCCCCCccccCHHHHHHHHH---------HHHhCCCCEEEEcCCccccccCccCHhhcC
Confidence 444 568999999999999999999996666665 344 48999999999874221 222211
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEEech-----hHhhhcccc-------ccCceEEecccchhhhhh---ccCccccc
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIMRND-----AAKLLKNTY-------FSGGTVAASIADIDFVKR---RQGVEELF 326 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-----~~~~l~~~~-------~g~~~~~~~~~~~~~~~~---~~~~~~~~ 326 (508)
.+.++++.|+||.+| ++| +|+++++++ +++.+.+.. .+... ..+....|... ........
T Consensus 302 ~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~--~~p~~~~~i~rl~~~~~~~~~~ 378 (533)
T 3f6t_A 302 PYNTMLVYSYSKLFG-CTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVV--LDPDKMKFIDRLCADSRSIGLY 378 (533)
T ss_dssp GGGEEEEEESHHHHT-CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTC--SCGGGCCHHHHHHHHHTTTTTG
T ss_pred CCCEEEEecCcccCC-CcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccc--cCcchhhhHHHHHHHHHHHHHh
Confidence 135699999999999 668 899999887 544332110 00000 00000000000 00001222
Q ss_pred cCCCCChhHHHHHH-HHHHHHH--------hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 327 EDGTASFLSIASIR-HGFNLIN--------SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 327 ~~gt~~~~~~~~l~-~al~~~~--------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
..++.+.+..+++. .++..+. ...++.+++++++.++++.+.|. + ++.+..+.. +
T Consensus 379 ~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-------~~~~~~~~~--------g 442 (533)
T 3f6t_A 379 HTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-------PKDETDTNT--------H 442 (533)
T ss_dssp GGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-------CCCCSTTBC--------C
T ss_pred cccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-------CccccCCCc--------e
Confidence 23344444444422 1233332 12357788889999999999996 5 344443332 6
Q ss_pred ceEEEEeeCC----CCC--------ccCH-HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCc
Q 010538 398 SMVSFNLKRP----DGS--------WFGY-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDN 464 (508)
Q Consensus 398 ~~v~~~~~~~----~~~--------~~~~-~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 464 (508)
.++++.++.. .+. ..+. ..+.++++++||.+.+|..|..+
T Consensus 443 ~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~--------------------------- 495 (533)
T 3f6t_A 443 YYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK--------------------------- 495 (533)
T ss_dssp SEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS---------------------------
T ss_pred EEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC---------------------------
Confidence 7777777531 000 0011 23456667899999999877542
Q ss_pred cccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 465 DIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 465 ~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+++|+|++. .+.++++.+++.|.++++..
T Consensus 496 -------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 496 -------PGELRVSQAN-LPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp -------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred -------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHH
Confidence 5789999965 57899999999999887653
No 163
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.92 E-value=4.5e-24 Score=219.50 Aligned_cols=341 Identities=15% Similarity=0.029 Sum_probs=218.0
Q ss_pred chHHHHHHhhccCCCC-CeeeeCCC---CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC
Q 010538 25 SIDQIRATEFKRLENG-TVYLDHAG---ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS 100 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~-~iyld~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~ 100 (508)
.++.+|. ..+.. .. .+| |+++ .+++++.+++++. . +.+| ....+.+++.+++++|++
T Consensus 14 ~~~~~~~-~i~~~-g~~~v~-~~~~~~~~~~~~~~v~~a~~-~-----~~~~----------~~~~~~~~~~~a~~~g~~ 74 (374)
T 2aeu_A 14 ARKIILE-ILNEK-GRDALY-DLSGLSGGFLIDEKDKALLN-T-----YIGS----------SYFAEKVNEYGLKHLGGD 74 (374)
T ss_dssp HHHHHHH-HHHHT-CGGGCE-ECSSCCCCCCCCHHHHHHHT-S-----TTHH----------HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHH-HHhcc-Ccccee-eecccCCCCCCCHHHHHHHH-H-----hcCc----------hHHHHHHHHHHHHHhCCC
Confidence 4556776 66654 22 356 6443 4677888877763 1 1111 122356677778999984
Q ss_pred -CCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccc
Q 010538 101 -MKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI 179 (508)
Q Consensus 101 -~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~ 179 (508)
++ ++++++|+|+|+++++.++ +|++|+++...|++...+...++..|++++.+ .
T Consensus 75 ~~~--~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~------------------- 129 (374)
T 2aeu_A 75 END--KCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-D------------------- 129 (374)
T ss_dssp TTE--EEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-S-------------------
T ss_pred Ccc--eEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-C-------------------
Confidence 35 7999999999999999987 78999999988877666555666789998887 1
Q ss_pred ccchhhhhcCCCCCCCCCCCCCceE-EEEeCCCCCCc-cccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCC
Q 010538 180 SLLPIQRRKGASFPERDPAGDAYNL-FAFPSECNFSG-SRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 180 ~~d~~~l~~~~~l~~~~~~~~~t~l-v~~~~~~n~tG-~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~ 257 (508)
|+++++ ++ +++|++ |++++++|||| ...++++|.++|++ +|+++|+|++++.+..
T Consensus 130 --d~~~l~--~~-------~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~------------~~~~li~De~~~~~~~ 186 (374)
T 2aeu_A 130 --KVGEIL--NK-------IDKDTLVIITGSTMDLKVIELENFKKVINTAKN------------KEAIVFVDDASGARVR 186 (374)
T ss_dssp --CHHHHH--TT-------CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHH------------HTCCEEEECTTHHHHH
T ss_pred --CHHHHH--hc-------CCCccEEEEEccCCCCCCCCcccHHHHHHHHHH------------cCCEEEEECCcccccc
Confidence 366777 32 357899 99999999999 88999999999997 8999999999876531
Q ss_pred -CC-C--CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCCh
Q 010538 258 -PP-D--LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASF 333 (508)
Q Consensus 258 -~~-d--~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 333 (508)
+. . ...+++|++++|+||++++| ++|++++++++++.+..... ...++++.
T Consensus 187 ~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~ 241 (374)
T 2aeu_A 187 LLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEGT------------------------KFGLEAQP 241 (374)
T ss_dssp HHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHHH------------------------TTTCBCCH
T ss_pred cccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhhc------------------------cccCCCCH
Confidence 11 1 12246899999999998866 67999999988876654310 01124555
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHH----HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 334 LSIASIRHGFNLINSLTVPAICRHIASL----GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 334 ~~~~~l~~al~~~~~~g~~~i~~~~~~l----~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
...+++.++++.+....++...++.+.+ .+.+.+.|..+. ...++.+..++. +.++ +.....+.
T Consensus 242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~g~~~~~~~~--------g~~~-~~~~~~~~ 309 (374)
T 2aeu_A 242 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAID---DNINIVYERTPT--------GFVI-KRVYKDDT 309 (374)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTC---TTEEEEEEECSS--------EEEE-EEEESSHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCcceeeCCc--------eEEE-Eeeccccc
Confidence 5666666676653110122233333333 355555554430 002555543322 3332 22221100
Q ss_pred Ccc-CHH-HHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC-CCCHH
Q 010538 410 SWF-GYR-EVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY-MSTFE 486 (508)
Q Consensus 410 ~~~-~~~-~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~-~~t~e 486 (508)
... +.. ...++++++||.+++|..+.. ..+++||+++. ..+++
T Consensus 310 ~~~~~~~~~~~~ll~~~gV~v~~g~~~~~----------------------------------~~~~lRi~~~~~~~~~~ 355 (374)
T 2aeu_A 310 INIKKLIEIGFNLLKNYGIITITVAGMPG----------------------------------ASKSLRIDLTSRDAERI 355 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCEECSTTSSSCS----------------------------------SCCSEEEETTSGGGGGS
T ss_pred ccccchHHHHHHHHHhCCEEEecCCCCCC----------------------------------CCCeEEEEcCCchHHHH
Confidence 000 000 123566788999998753311 14689999974 23444
Q ss_pred HHHHHHHhhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~~ 503 (508)
+++++.+++++.++-++
T Consensus 356 ~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 356 DDNYIIKAIVESIKMAF 372 (374)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 58999999988877665
No 164
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.92 E-value=1e-23 Score=220.30 Aligned_cols=334 Identities=11% Similarity=-0.016 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEE-cc
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAI-DV 160 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v-~~ 160 (508)
....+++++.+++++|.+ . .+++++ +++|+++++.++ .++|++|+++..+|+++...+. .++..|++++.+ +.
T Consensus 57 ~~~~~~l~~~la~~~g~~-~--~v~~~s-Gt~A~~~~l~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK-A--ALATAS-GHAAQFLALTTL-AQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS-E--EEEESS-HHHHHHHHHHHH-CCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred ChHHHHHHHHHHHHhCCC-c--eEEecC-HHHHHHHHHHHH-hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 456788999999999986 3 455555 599999999988 6889999999999988765443 356689999998 66
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ |+++++ +++ .++|++|++++++|++|.+.|+++|.++|++
T Consensus 132 ~--------------------d~~~l~--~~i------~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~----------- 172 (421)
T 2ctz_A 132 E--------------------RPEEFL--ALT------DEKTRAWWVESIGNPALNIPDLEALAQAARE----------- 172 (421)
T ss_dssp C--------------------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH-----------
T ss_pred C--------------------CHHHHH--Hhh------ccCCeEEEEECCCCCCCcccCHHHHHHHHHH-----------
Confidence 3 256667 444 4689999999999999999999999999998
Q ss_pred CCCeEEEEeccc-cCCCCCCCCCCCCCcEEEEeccccccCCCc-ceEEEEec---hh----HhhhccccccCceEEecc-
Q 010538 241 KGRWMVLIDAAK-GCVTQPPDLSKYPVDFVVMSFYKIFGYPTG-LGALIMRN---DA----AKLLKNTYFSGGTVAASI- 310 (508)
Q Consensus 241 ~~g~~vivD~a~-~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G-~G~l~~~~---~~----~~~l~~~~~g~~~~~~~~- 310 (508)
+|+++|+|++| +.|... +....++|++++|+||++++|.+ +|++++.+ ++ .+.+.+...++.......
T Consensus 173 -~g~~livD~~~~~~g~~~-~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~ 250 (421)
T 2ctz_A 173 -KGVALIVDNTFGMGGYLL-RPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEA 250 (421)
T ss_dssp -HTCEEEEECGGGGGGTSC-CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHH
T ss_pred -cCCEEEEECCcccccccC-CccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhh
Confidence 89999999999 877532 22245799999999999996653 78888852 12 334555444432211100
Q ss_pred -cchhhhhhccCcccccc----CC-CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe
Q 010538 311 -ADIDFVKRRQGVEELFE----DG-TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY 384 (508)
Q Consensus 311 -~~~~~~~~~~~~~~~~~----~g-t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~ 384 (508)
....|.. ..+++ .| ..+....+.....++. +..+.++..++++++.+.|++. ++++.+
T Consensus 251 ~~~~~~~~-----~~r~~~~~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~------p~v~~v 314 (421)
T 2ctz_A 251 FGELAFIV-----KARVDGLRDQGQALGPFEAWVVLLGMET-----LSLRAERHVENTLHLAHWLLEQ------PQVAWV 314 (421)
T ss_dssp HGGGHHHH-----HHHHTHHHHHCCCCCHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHHHHTC------TTEEEE
T ss_pred cchhHHHH-----HHHHHHHHhcCCCCCHHHHHHHHcCcch-----HHHHHHHHHHhHHHHHHHHHhC------CCeeEE
Confidence 0000100 01111 12 3333333333333332 3445566668999999999987 468776
Q ss_pred cCCCCCccc----------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchH-HHhhcC-CChhhhhh
Q 010538 385 GTYTSEVSY----------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGA-CAKYLG-LSHSDLLS 452 (508)
Q Consensus 385 ~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~-~~~~~~-~~~s~~~~ 452 (508)
..+.....+ ...+++++|.+++. .. ....+...+...++.++.|..|+... +..... .-+...+.
T Consensus 315 ~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~-~~--~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~ 391 (421)
T 2ctz_A 315 NYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG-YE--AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQA 391 (421)
T ss_dssp ECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH-HH--HHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHH
T ss_pred ECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC-HH--HHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHH
Confidence 422110000 12488999999652 00 11223344444556677774443211 000000 00011233
Q ss_pred hhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 453 NIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
++|. .++.||+|++.++.++.++.+.+++
T Consensus 392 ~~g~--------------~~~~vRlS~g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 392 QAGV--------------SPEMVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp HHTC--------------CTTEEEEECCSSCHHHHHHHHHHHT
T ss_pred hcCC--------------CCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 4443 3689999999877666666665554
No 165
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=9.7e-24 Score=222.13 Aligned_cols=353 Identities=14% Similarity=0.036 Sum_probs=232.8
Q ss_pred CCeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHHH-HHHHHHHcCCCCCCceEEEcCChHHHH
Q 010538 40 GTVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRAA-REQVLDYFNASMKDYKCIFTSGATAAL 116 (508)
Q Consensus 40 ~~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-r~~la~~~~~~~~~~~i~~t~g~t~al 116 (508)
+.+-|. ++..+++|.+++++.+.+ .+.+ ++|.+.+..+....+..++. ++++++++|++.. .++++|+++|+
T Consensus 46 ~~i~l~-~~~~~~~~~v~~a~~~~~-~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~---~v~~~sGs~a~ 120 (447)
T 3h7f_A 46 DTLEMI-ASENFVPRAVLQAQGSVL-TNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFA---NVQPHSGAQAN 120 (447)
T ss_dssp HSEECC-TTCCCCCHHHHHHHTSGG-GGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHH
T ss_pred CceeEe-cCCCCCCHHHHHHHHHHh-cCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCce---EEEeCCHHHHH
Confidence 456664 445667999998876544 2222 33444433343334444544 4999999999754 44367778899
Q ss_pred HHHHhhcCCCCCCeEEEecccccchH-HH--HHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCC
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVL-GI--REYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~-~~--~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
..++.++ .++|++|++....|+++. .. .... ..+..+..++++. ++.+ |+++++ +++
T Consensus 121 ~~a~~~~-~~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~---------------d~~~l~--~~i 181 (447)
T 3h7f_A 121 AAVLHAL-MSPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGVDPATHLI---------------DMDAVR--ATA 181 (447)
T ss_dssp HHHHHHH-CCTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECCCTTTCSC---------------CHHHHH--HHH
T ss_pred HHHHHHh-cCCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCcCcccCCc---------------CHHHHH--HHH
Confidence 9999998 688999999998887732 11 1111 1245666677653 3334 577787 444
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCCCCCcE
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSKYPVDF 268 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~~~~D~ 268 (508)
. ..++++|+++.++|+++. ++++|.++|++ +|+++|+|++|+.|. ...+.. .++|+
T Consensus 182 ~-----~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~------------~g~lli~Dea~~~g~~~~g~~~~~~-~~~di 241 (447)
T 3h7f_A 182 L-----EFRPKVIIAGWSAYPRVL--DFAAFRSIADE------------VGAKLLVDMAHFAGLVAAGLHPSPV-PHADV 241 (447)
T ss_dssp H-----HHCCSEEEEECSSCCSCC--CHHHHHHHHHH------------HTCEEEEECTTTHHHHHTTSSCCST-TTCSE
T ss_pred H-----hcCCeEEEEcCCCCCCcc--CHHHHHHHHHH------------cCCEEEEECCchhhhhcCCCCCCCC-CCCcE
Confidence 2 235688888888888876 99999999998 899999999986542 112211 25799
Q ss_pred EEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHh
Q 010538 269 VVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINS 348 (508)
Q Consensus 269 ~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~ 348 (508)
+++|+||+++||.| |+++.++++.+.+.+.... ...++++...++++.+++..+.+
T Consensus 242 ~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~-----------------------~~~~~~~~~~~~a~~~a~~~~~~ 297 (447)
T 3h7f_A 242 VSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP-----------------------GQQGGPLMHVIAGKAVALKIAAT 297 (447)
T ss_dssp EEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT-----------------------TTCSSCCHHHHHHHHHHHHHTTS
T ss_pred EEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC-----------------------cccCCccHHHHHHHHHHHHHhhC
Confidence 99999999888987 9999998877666543221 12355666667777777776544
Q ss_pred cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCee
Q 010538 349 LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQL 428 (508)
Q Consensus 349 ~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v 428 (508)
.+++.+.+++.++++++.+.|.+... ..++++++.+... .+++++.+.... ++...+.+.|+++||.+
T Consensus 298 ~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~g~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~GI~v 365 (447)
T 3h7f_A 298 PEFADRQRRTLSGARIIADRLMAPDV--AKAGVSVVSGGTD-------VHLVLVDLRDSP---LDGQAAEDLLHEVGITV 365 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHH--HHTTCEEGGGSCS-------SSEEEEECTTSS---CCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cCCCeEEecCCCC-------CCEEEEEcCCCC---CCHHHHHHHHHHCCeEE
Confidence 35688899999999999999976400 0014677653222 677777775321 34456788888899999
Q ss_pred ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CCHHHHHHHHHhhhhhhhh
Q 010538 429 RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 429 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t~eev~~l~~~~~~~~~~ 501 (508)
+....+.... +...++.+|+++... .|++|++++++.|.+.++-
T Consensus 366 ~~~~i~~~~~-----------------------------~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 366 NRNAVPNDPR-----------------------------PPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp BC------------------------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred ecccCCCCCC-----------------------------CCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 8322111000 001256799998755 5799999999999887643
No 166
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.91 E-value=2.6e-23 Score=214.75 Aligned_cols=327 Identities=14% Similarity=0.066 Sum_probs=214.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+.+++.+.+ .. +.+....+ .....+++++.+++++| ++ ++++|+|+
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~-~~-~~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~gg 106 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQA-EK-LIHCSNLF-----WNRPQMELAELLSKNTF--GG--KVFFANTG 106 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-HH-CSCCCTTS-----EEHHHHHHHHHHHHTTT--SC--EEEEESSH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHH-Hh-cccCcccc-----CCHHHHHHHHHHHHhcC--CC--eEEEeCCH
Confidence 56778888543 445788888876644 22 22221111 23557788999999998 45 79999999
Q ss_pred HHHHHHHHhhcCC------CCCCeEEEecc-cccchHHHHHHHHhcCCe------------EEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW------SHQSSYMYTME-NHNSVLGIREYALSQGAA------------AFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~------~~g~~vl~~~~-~h~s~~~~~~~~~~~G~~------------v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++.. .+++.|++... .|+++..+... .|.+ +..+|.+
T Consensus 107 ~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~------------ 171 (397)
T 2ord_A 107 TEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTA---TGQPKYQKPFEPLVPGFEYFEFN------------ 171 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHH---SBCHHHHGGGCSCCTTEEEECTT------------
T ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhc---cCChhhccccCCCCCCeeEecCC------------
Confidence 9999999988732 23456666644 44555544443 3443 5555542
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcc-ccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS-RFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~-~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ ++++++|++++++||||. +++.+.+.++++ +|+++|+++|+|++|
T Consensus 172 --------d~~~l~--~~l------~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~---------l~~~~~~~li~De~~ 226 (397)
T 2ord_A 172 --------NVEDLR--RKM------SEDVCAVFLEPIQGESGIVPATKEFLEEARK---------LCDEYDALLVFDEVQ 226 (397)
T ss_dssp --------CHHHHH--HHC------CTTEEEEEECSEECTTTCEECCHHHHHHHHH---------HHHHHTCEEEEECTT
T ss_pred --------CHHHHH--HHh------hcCeEEEEEecccCCCCcccCCHHHHHHHHH---------HHHHcCCEEEEEecc
Confidence 467777 444 357899999999999999 666554444443 333499999999999
Q ss_pred c-CCCC--CCCCCCC--CCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 253 G-CVTQ--PPDLSKY--PVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 253 ~-~g~~--~~d~~~~--~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+ ++.. +.++... ..|++ |++|+++++.++|+++++++++ .+.+... ..
T Consensus 227 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~~------------------------~~ 279 (397)
T 2ord_A 227 CGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGDH------------------------GT 279 (397)
T ss_dssp TTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCTTSS------------------------CC
T ss_pred cCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCCCCc------------------------CC
Confidence 7 2211 2222222 36866 5579998323489999998764 4332100 01
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
..+.+....+++.++++.+.+ +++.++++++++++.+.|+++.. +.+.+....+ .++++++.+++.
T Consensus 280 ~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~---------~g~~~~~~~~~~ 345 (397)
T 2ord_A 280 TFGGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKE--EYDVVADVRG---------MGLMIGIQFREE 345 (397)
T ss_dssp SSTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHH--hCCceEEEEE---------EeEEEEEEECCh
Confidence 123456667777778887654 56788899999999999877510 0011211111 168888888642
Q ss_pred CCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 408 DGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
.+..++.+.|.++||.+++|. ++.+|+++++.+|.+|
T Consensus 346 ----~~~~~l~~~l~~~gi~v~~~~---------------------------------------~~~iRis~~~~~~~e~ 382 (397)
T 2ord_A 346 ----VSNREVATKCFENKLLVVPAG---------------------------------------NNTIRFLPPLTVEYGE 382 (397)
T ss_dssp ----SCHHHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHHH
T ss_pred ----HHHHHHHHHHHHCCCEEccCC---------------------------------------CCEEEEECCcCCCHHH
Confidence 234568888888999988751 4689999999999999
Q ss_pred HHHHHHhhhhhhh
Q 010538 488 AKVNRCSSFDFVN 500 (508)
Q Consensus 488 v~~l~~~~~~~~~ 500 (508)
++++++.|+++++
T Consensus 383 i~~~~~~l~~~l~ 395 (397)
T 2ord_A 383 IDLAVETLKKVLQ 395 (397)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 167
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.91 E-value=8.5e-24 Score=216.35 Aligned_cols=319 Identities=12% Similarity=0.044 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEA 163 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~ 163 (508)
...+++++.+++++|.+ ++++++|+|+|+.+++.++..++|++|+++...|+++.... +..|++++.++++.+
T Consensus 35 ~~~~~l~~~la~~~~~~----~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~---~~~G~~~~~~~~~~~ 107 (367)
T 3nyt_A 35 PEVTELEDRLADFVGAK----YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETV---ALLGAKPVYVDIDPR 107 (367)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH---HHTTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHH---HHcCCEEEEEecCCc
Confidence 34778899999999986 58999999999999999986788999999999998876554 456999999998754
Q ss_pred -cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 164 -VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 164 -~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
..+ |+++++ +++ ++++++|+ ++|++|...|+++|.++|++ +
T Consensus 108 ~~~~---------------d~~~l~--~~i------~~~~~~v~---~~~~~G~~~~~~~i~~la~~------------~ 149 (367)
T 3nyt_A 108 TYNL---------------DPQLLE--AAI------TPRTKAII---PVSLYGQCADFDAINAIASK------------Y 149 (367)
T ss_dssp TCSB---------------CGGGTG--GGC------CTTEEEEC---CBCGGGCCCCHHHHHHHHHH------------T
T ss_pred cCCc---------------CHHHHH--Hhc------CcCCcEEE---eeCCccChhhHHHHHHHHHH------------c
Confidence 444 678888 554 46788887 67799999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCC--cEEEEec--cccccCCCc-ceEEEEe-chhHhhhccccccCceEEecccchhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPV--DFVVMSF--YKIFGYPTG-LGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~--D~~~~S~--~K~~g~P~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
|+++|+|++|+.|.. .+....+. |++++|+ ||+++ +.| .|+++.+ +++.+.+.+....+.. . .+.
T Consensus 150 ~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~-~~g~gg~~~~~~~~l~~~~~~~~~~g~~-~------~~~ 220 (367)
T 3nyt_A 150 GIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLG-CYGDGGAIFTNDDELATAIRQIARHGQD-R------RYH 220 (367)
T ss_dssp TCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCCEEEEESCHHHHHHHHHHTBTTEE-E------TTE
T ss_pred CCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCC-CcCceeEEEeCCHHHHHHHHHHHhcCCC-c------Cce
Confidence 999999999998765 23222233 9999995 89999 534 5777774 4555555554332221 0 000
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCC
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
.....+ ....+....+ .++..+. .++.+.++.+++++++.+.|+++ ++.+....... ...
T Consensus 221 ----~~~~g~-~~~~~~~~aa---~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~---~~~ 280 (367)
T 3nyt_A 221 ----HIRVGV-NSRLDTLQAA---ILLPKLE--IFEEEIALRQKVAAEYDLSLKQV-------GIGTPFIEVNN---ISV 280 (367)
T ss_dssp ----ECSCCC-BCCCCHHHHH---HHHHHHH--THHHHHHHHHHHHHHHHHHHHHT-------TCCCCCCCTTE---ECC
T ss_pred ----eeccCc-CCCccHHHHH---HHHHHHH--HHHHHHHHHHHHHHHHHHHhccC-------CeeccCCCCCC---cee
Confidence 000000 0112222222 2222222 35777788899999999999886 33332221110 011
Q ss_pred CceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 397 GSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
..++.+.+++ ...+.+.|.++||.++.+..+.. ..++.++.. ...++. ........+|
T Consensus 281 ~~~~~~~~~~-------~~~l~~~L~~~GI~~~~~~~~~~-~~~~~~~~~----~~~~~~----------~~~~~~~~l~ 338 (367)
T 3nyt_A 281 YAQYTVRMDN-------RESVQASLKAAGVPTAVHYPIPL-NKQPAVADE----KAKLPV----------GDKAATQVMS 338 (367)
T ss_dssp CSSEEEECSS-------HHHHHHHHHHHTCCCBCSCSSCG-GGSGGGCCT----TCCCHH----------HHHHHHHEEE
T ss_pred eEEEEEEeCC-------HHHHHHHHHHCCCceeccCCCcc-ccChhhhcc----CCCChH----------HHHHHhCeEE
Confidence 2344444431 24588999999999987642111 111111100 000000 0011357899
Q ss_pred EecCCCCCHHHHHHHHHhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~ 498 (508)
++++..+|++||+++++.+++.
T Consensus 339 lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 339 LPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ECCCTTCCHHHHHHHHHHHHC-
T ss_pred ccCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 168
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.91 E-value=3.7e-24 Score=221.31 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=205.3
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC------CCCceEEE--cCChH
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS------MKDYKCIF--TSGAT 113 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~------~~~~~i~~--t~g~t 113 (508)
+|+|+.+.+++.+.+.+++.+ .... ..+.......+ ..++|+.++++++.. ++ +|++ |+|+|
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~-~~~~-~~~~~Y~~~~g------~~~lr~~ia~~~~~~~~~~~~~~--~i~~v~t~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAM-IAAK-KMDKEYLPIAG------LADFTRASAELALGENSEAFKSG--RYVTVQGISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHH-HHHT-TCCCCCCCTTC------CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHH
T ss_pred eEECCCCCEechHHHHHHHHH-hccc-ccccCCCCCCC------CHHHHHHHHHHhcCCCccccccC--ceEEEecCcch
Confidence 355666666666777766543 3221 11222111112 456677777777643 67 7877 99999
Q ss_pred HHHHHHHhhcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC--ccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVGEAFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~--~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+++++.++. .++|++|+++...|+++.... +..|.+++.+|++. +..+ |++.++
T Consensus 107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~---------------d~~~l~-- 166 (401)
T 7aat_A 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF---RDAGLQLQAYRYYDPKTCSL---------------DFTGAM-- 166 (401)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH---HHTTCEEEEEECEETTTTEE---------------CHHHHH--
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH---HHcCCeeEeeeeeccccCcc---------------CHHHHH--
Confidence 99998887652 377999999988887776554 45699999999853 3333 566444
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC-CCC-----CC--
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT-QPP-----DL-- 261 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~-~~~-----d~-- 261 (508)
+.+++ ..++++++++++++||||.+++.+++.++++ +|+++|+++++|+++.... .+. .+
T Consensus 167 ~~l~~---~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~---------~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~ 234 (401)
T 7aat_A 167 EDISK---IPEKSIILLHACAHNPTGVDPRQEQWKELAS---------VVKKRNLLAYFDMAYQGFASGDINRDAWALRH 234 (401)
T ss_dssp HHHTT---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred HHHHh---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHhCCcEEEEccccccccCCCccccHHHHHH
Confidence 33322 3567899999999999999999776666655 4555999999999976422 211 01
Q ss_pred --CCCCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 262 --SKYPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 262 --~~~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
...+..+++.|+||.|| ++| +|++++ +++..+.+....... .+... ..++..
T Consensus 235 ~~~~~~~~i~~~S~sK~~~-~~G~RiG~l~~~~~~~~~~~~~~~~~~~~-------------------~~~~~-~~~~~~ 293 (401)
T 7aat_A 235 FIEQGIDVVLSQSYAKNMG-LYGERAGAFTVICRDAEEAKRVESQLKIL-------------------IRPMY-SNPPMN 293 (401)
T ss_dssp HHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHHHH-------------------HHHHH-SSCCHH
T ss_pred HHhcCCcEEEEecCCcccc-cccCceEEEEEEeCCHHHHHHHHHHHHHH-------------------HHhcc-CCCChH
Confidence 12245689999999999 668 799987 333221111110000 00111 122222
Q ss_pred HHHHHHHHHHH--H-H--hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 335 SIASIRHGFNL--I-N--SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 335 ~~~~l~~al~~--~-~--~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
....+..+++. + . ...++..+++++++++++.+.|+++.. .+++++..+.. +.+++..+
T Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~~--------~~~~~~~~----- 357 (401)
T 7aat_A 294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGS---SHNWQHITDQI--------GMFCFTGL----- 357 (401)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSCCHHHHHCC--------SSEEECCC-----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCceecCCc--------ceEEecCC-----
Confidence 22222222210 0 0 112577888999999999999987620 01244444432 44444332
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
+...+..+++++||.+.+ .+|+|++.+++++ |+
T Consensus 358 ---~~~~~~~ll~~~gi~v~~-------------------------------------------~~Ris~~~~~~~~-i~ 390 (401)
T 7aat_A 358 ---KPEQVERLTKEFSIYMTK-------------------------------------------DGRISVAGVASSN-VG 390 (401)
T ss_dssp ---CHHHHHHHHHHHCEECCT-------------------------------------------TCEEEGGGCCTTT-HH
T ss_pred ---CHHHHHHHHHhCCEeccC-------------------------------------------CCeEEeccCChhh-HH
Confidence 223466666888999753 2799999776665 99
Q ss_pred HHHHhhhhhh
Q 010538 490 VNRCSSFDFV 499 (508)
Q Consensus 490 ~l~~~~~~~~ 499 (508)
++++.|++.+
T Consensus 391 ~~~~~l~~~~ 400 (401)
T 7aat_A 391 YLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 169
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.91 E-value=5e-22 Score=207.31 Aligned_cols=327 Identities=14% Similarity=0.072 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE- 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~- 162 (508)
....++++.++++++.+ ++++|+|+|+|+.+++.++. +|++|+++...|+++.... +..|++++.++++.
T Consensus 52 ~~~~~l~~~la~~~~~~----~v~~~~ggt~al~~~l~~l~--~gd~Vlv~~~~~~~~~~~~---~~~G~~~~~v~~~~~ 122 (424)
T 2po3_A 52 PLVREFEERVAGLAGVR----HAVATCNATAGLQLLAHAAG--LTGEVIMPSMTFAATPHAL---RWIGLTPVFADIDPD 122 (424)
T ss_dssp HHHHHHHHHHHHHHTSS----EEEEESCHHHHHHHHHHHHT--CCSEEEEESSSCTHHHHHH---HHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHhCCC----eEEEeCCHHHHHHHHHHHcC--CCCEEEECCCccHHHHHHH---HHcCCEEEEEecCCC
Confidence 45778999999999973 79999999999999999983 5799999999998876543 45699999999875
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
...+ |+++++ +++ ++++++|++++ +||...++++|.++|++ +
T Consensus 123 ~~~~---------------d~~~l~--~~i------~~~~~~v~~~~---~tG~~~~l~~i~~la~~------------~ 164 (424)
T 2po3_A 123 TGNL---------------DPDQVA--AAV------TPRTSAVVGVH---LWGRPCAADQLRKVADE------------H 164 (424)
T ss_dssp TSSB---------------CHHHHG--GGC------CTTEEEEEEEC---GGGCCCCHHHHHHHHHH------------T
T ss_pred cCCc---------------CHHHHH--Hhh------CcCCcEEEEEC---CCCCcCCHHHHHHHHHH------------c
Confidence 3334 688888 555 45789988764 79999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCC--CCcEEEEecc--ccccCCCcceEEEEe-chhHhhhccccccCceEEecccchhhhh
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKY--PVDFVVMSFY--KIFGYPTGLGALIMR-NDAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~--~~D~~~~S~~--K~~g~P~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
|+++|+|++|+.|.. .+.... ..|++++|+| |+++ +...|+++.+ +++++.+.+....+... .+.
T Consensus 165 ~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~-~~~~G~~v~~~~~l~~~l~~~~~~~~~~-------~~~- 234 (424)
T 2po3_A 165 GLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVN-AFEGGAVVTDDADLAARIRALHNFGFDL-------PGG- 234 (424)
T ss_dssp TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHHBTTTTC-------TTC-
T ss_pred CCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCcc-CCCCeEEEeCCHHHHHHHHHHHhcCccc-------ccc-
Confidence 999999999997554 222111 1589999988 7887 4347999988 67777666543221110 000
Q ss_pred hccCccccccCCCC-ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC-CCCcccCC
Q 010538 318 RRQGVEELFEDGTA-SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY-TSEVSYHD 395 (508)
Q Consensus 318 ~~~~~~~~~~~gt~-~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~-~~~~~~~~ 395 (508)
.. ..|.. .+..+ +...++..+. +++.+.++..++++++.+.|.++ ++++++.++ ... .
T Consensus 235 -----~~--~~g~~~~~~~~-~aa~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~~----~ 294 (424)
T 2po3_A 235 -----SP--AGGTNAKMSEA-AAAMGLTSLD--AFPEVIDRNRRNHAAYREHLADL------PGVLVADHDRHGL----N 294 (424)
T ss_dssp -----CT--TCCCBCCCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSC------TTEEECCGGGGSC----C
T ss_pred -----cc--ccCcCCCcCHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccC------CCccccCCCCCCc----c
Confidence 00 01111 11222 2222222222 36778888999999999999887 368887632 210 0
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHH-HhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGAC-AKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
...++++.+++.. ..++..++.+.|.++||.+++ .|.++.. .+.+ ..+|... | +. ........
T Consensus 295 ~~~~~~i~~~~~~-~~~~~~~l~~~L~~~gI~v~~--~~~~~~~~~~~~--------~~~g~~~-~--~~--~~r~~~~~ 358 (424)
T 2po3_A 295 NHQYVIVEIDEAT-TGIHRDLVMEVLKAEGVHTRA--YFSPGCHELEPY--------RGQPHAP-L--PH--TERLAARV 358 (424)
T ss_dssp CCCCEEEEECHHH-HSSCHHHHHHHHHHTTEECBC--TTCSCGGGSTTT--------TTSCCCC-C--HH--HHHHHTTE
T ss_pred ccEEEEEEECCcc-chhhHHHHHHHHHHCCCceec--ccCCccccchhh--------hhcCCCC-C--hh--HHHHhcCE
Confidence 1256667775200 002345688899999999987 3332110 0000 0000000 0 00 00001345
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
+|++++.++|.+|++++++.|+++++...
T Consensus 359 l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 359 LSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999998876543
No 170
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.91 E-value=7.7e-24 Score=223.82 Aligned_cols=316 Identities=14% Similarity=0.062 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccCC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVEE 162 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~~ 162 (508)
...+++++++++++|++ ++++++|+++|+.+++. + .++|++|+++...|+++...+. .++..|++++.+|.+
T Consensus 133 ~~~~~l~~~la~~~g~~----~~i~~~sGt~al~~~l~-~-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 205 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD----RAFCFTSGMAALSAVTH-L-IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT- 205 (464)
T ss_dssp HHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHT-T-SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-
T ss_pred HHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHH-H-hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 36788999999999975 46666777889998886 4 5789999999988988765443 345679999999874
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKG 242 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~ 242 (508)
|+++++ +++ +++|++|++++++||||.++|+++|.++|++ +
T Consensus 206 -------------------d~~~l~--~~i------~~~tk~v~l~~p~NptG~v~~l~~i~~la~~------------~ 246 (464)
T 1ibj_A 206 -------------------KLDEVA--AAI------GPQTKLVWLESPTNPRQQISDIRKISEMAHA------------Q 246 (464)
T ss_dssp -------------------SHHHHH--HHC------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHT------------T
T ss_pred -------------------CHHHHH--HHh------ccCceEEEEeCCCCCCCEeecHHHHHHHHHH------------c
Confidence 256677 444 4679999999999999999999999999998 9
Q ss_pred CeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCcc--eEEEEec-hhHhhhccccccCceEEecccchhhhhhc
Q 010538 243 RWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTGL--GALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 243 g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|+++|+|++|+.|.....+ ..++|+++.|+||++++|.|+ |++++++ ++++.+.+...
T Consensus 247 gi~livDea~~~g~~~~~~-~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~------------------ 307 (464)
T 1ibj_A 247 GALVLVDNSIMSPVLSRPL-ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQN------------------ 307 (464)
T ss_dssp TCEEEEECTTTCTTTCCGG-GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHH------------------
T ss_pred CCEEEEECCCcccccCChh-hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHH------------------
Confidence 9999999999887642122 257999999999998878775 9999986 66655543310
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH--hcc--cCCCCCceEEEecCCCCCcccCC
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVL--LSL--RHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L--~~l--~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
...++.+....++..++++.+.. .++...+....+.+++.+.- .+. +.....++++++.+... .
T Consensus 308 ------~~g~~~~~~~~~a~~~al~~~~~-r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~-----g 375 (464)
T 1ibj_A 308 ------SEGSGLAPFDCWLCLRGIKTMAL-RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAK-----G 375 (464)
T ss_dssp ------HTTCBCCHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCS-----C
T ss_pred ------hcCCCCCHHHHHHHHhchhhHHH-HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCC-----C
Confidence 01122233333333334432111 12222233333333333210 000 00011234555444321 1
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC----CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC----FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
.+++++|.+++.+ ....+.+.|...||.++.|. .|.+.... ..+. +++.+.++ +..
T Consensus 376 ~g~~~~~~l~~~~----~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~-~~~~-~~~~~~~~--------------g~~ 435 (464)
T 1ibj_A 376 AGSVFSFITGSVA----LSKHLVETTKYFSIAVSFGSVKSLISMPCFMS-HASI-PAEVREAR--------------GLT 435 (464)
T ss_dssp CCSEEEEECSCHH----HHHHHHHHCSSSEECSCCCSSSCEEECTTTTT-TCSC-CSSSSSSS--------------SCC
T ss_pred CceEEEEEECCHH----HHHHHHHhcCcceEeecCCCCceeeecccccc-cccC-CHHHHHhc--------------CCC
Confidence 3789999984310 11236666777899999886 33321100 0000 00011111 123
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
++.+|+|++. ||++.+++.|++.++
T Consensus 436 ~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 436 EDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp TTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred cCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 5789999996 889999999887764
No 171
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=2.4e-23 Score=216.24 Aligned_cols=277 Identities=12% Similarity=0.013 Sum_probs=186.5
Q ss_pred eEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccch
Q 010538 105 KCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLP 183 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~ 183 (508)
+|++|+|+++|+.+++.++ .++|++|+++...|+++.... +..|.+++.+|+.. +..+ |+
T Consensus 103 ~i~~t~g~~~al~~~~~~~-~~~gd~Vl~~~p~~~~~~~~~---~~~g~~~~~~~~~~~~~~~---------------d~ 163 (413)
T 3t18_A 103 SAIATPGGTGAIRSAIFSY-LDEGDPLICHDYYWAPYRKIC---EEFGRNFKTFEFFTDDFAF---------------NI 163 (413)
T ss_dssp EEEEESHHHHHHHHHHHHH-CCSSCEEEEESSCCTHHHHHH---HHHTCEEEEECCBCTTSSB---------------CH
T ss_pred cEEEcCccHHHHHHHHHHh-cCCCCEEEECCCCcccHHHHH---HHhCCeEEEeeccCCCCCc---------------CH
Confidence 7999999999999999998 688999999987777665544 44599999999843 3344 57
Q ss_pred hhhhcCCCCCCCCCCCCCce-EEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCCC------CCCeEEEEeccccC-
Q 010538 184 IQRRKGASFPERDPAGDAYN-LFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPFS------KGRWMVLIDAAKGC- 254 (508)
Q Consensus 184 ~~l~~~~~l~~~~~~~~~t~-lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~------~~g~~vivD~a~~~- 254 (508)
++++ +++.+. ..++++ +++++++ +||||.++|.+++.++++ +|+ ++|+++|+|++|+.
T Consensus 164 ~~l~--~~l~~~--~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~---------~~~~~~~~~~~~~~li~De~y~~~ 230 (413)
T 3t18_A 164 DVYK--EAIDEG--IRDSDRIASLINSPGNNPTGYSLSDEEWDEVIT---------FLKEKAEDKDKKITLIVDVAYLEF 230 (413)
T ss_dssp HHHH--HHHHHH--HHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTTSTTCEEEEEEECTTGGG
T ss_pred HHHH--HHHHHH--hhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHHhhccCCcEEEEEecccccc
Confidence 7777 444210 001456 7888888 999999999999888877 444 59999999999753
Q ss_pred CCCC---CCC----CCCCCc---EEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhc
Q 010538 255 VTQP---PDL----SKYPVD---FVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 255 g~~~---~d~----~~~~~D---~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+... ..+ ...+.+ +++.|+||.+| ++| +|++++ ++++++.+......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~----------------- 292 (413)
T 3t18_A 231 AGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHT-AYGLRSGAAVGISSSKEIIEEFEASLAH----------------- 292 (413)
T ss_dssp SSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEEESCHHHHHHHHHHHHH-----------------
T ss_pred cCChhhHHHHHHHHhhcCCCeeEEEEEecCccCC-CcCcCcEEEEEecCCHHHHHHHHHHHHH-----------------
Confidence 2111 111 111223 77889999999 557 899998 78887766543110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLIN----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
..+....+++.....++..+++... ....+.+++++.++++++.+.|+++ ++++..+..
T Consensus 293 ---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~~------- 355 (413)
T 3t18_A 293 ---SARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKEN-------KLTMIPYFG------- 355 (413)
T ss_dssp ---HHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCBCCCS-------
T ss_pred ---hhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCccCCCc-------
Confidence 0000112345555555554443211 1125677888999999999999886 566654433
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+.++++.+. +..++.+.|.++||.+++| .+++
T Consensus 356 -~~~~~~~~~-------~~~~~~~~l~~~gv~v~~g----------------------------------------~~~i 387 (413)
T 3t18_A 356 -GFFTFIPTD-------KAFDIVKDLEKENIFTIPS----------------------------------------AKGI 387 (413)
T ss_dssp -SSCEEEECS-------CHHHHHHHHHHTTEECEEC----------------------------------------SSEE
T ss_pred -eEEEEeCCC-------CHHHHHHHHHhCCEEEecC----------------------------------------CCce
Confidence 456665542 2345788899999999885 3679
Q ss_pred EEecCCCCCHHHHHHHHHhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~ 496 (508)
|||++..++.+.++++.++++
T Consensus 388 Ris~~~~~~~~~l~~l~~~l~ 408 (413)
T 3t18_A 388 RVAICGVGEEKIPKLVQRLAF 408 (413)
T ss_dssp EECTTTSCGGGHHHHHHHHHH
T ss_pred EEEEeeCCHHHHHHHHHHHHH
Confidence 999996666665444444443
No 172
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.91 E-value=8.4e-23 Score=212.90 Aligned_cols=316 Identities=15% Similarity=0.057 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV 160 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~ 160 (508)
.....+++++++++++|.+ ++++++|+++|+.+++.++ .++|++|+++...|+++..... .++..|++++.+|.
T Consensus 79 ~~p~~~~l~~~la~~~g~~----~~~~~~sG~~Ai~~al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 153 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAP----AAFATASGMAAVFTSLGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG 153 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHHHHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CChHHHHHHHHHHHHHCCC----cEEEECCHHHHHHHHHHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC
Confidence 3456788999999999973 5788899999999999998 7889999999988887766544 35668999999987
Q ss_pred CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 161 EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+ |+++++ +++ .++|++|++++++||||.+.|+++|.++|++
T Consensus 154 ~--------------------d~~~l~--~ai------~~~t~~v~le~p~NptG~~~~l~~i~~la~~----------- 194 (414)
T 3ndn_A 154 D--------------------DLSQWE--RAL------SVPTQAVFFETPSNPMQSLVDIAAVTELAHA----------- 194 (414)
T ss_dssp T--------------------CHHHHH--HHT------SSCCSEEEEESSCTTTCCCCCHHHHHHHHHH-----------
T ss_pred C--------------------CHHHHH--Hhc------CCCCeEEEEECCCCCCCccccHHHHHHHHHH-----------
Confidence 5 256667 444 4678999999999999999999999999998
Q ss_pred CCCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCCc---ceEEEEechhHh-hhccccccCceEEecccchhhh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAK-LLKNTYFSGGTVAASIADIDFV 316 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~ 316 (508)
+|+++|+|++|+.|.....+ ..++|+++.|++|+++ +.| .|+++++++.+. .++...
T Consensus 195 -~g~~livDe~~~~~~~~~~~-~~g~div~~S~sK~l~-~~G~~~~G~vv~~~~~~~~~l~~~~---------------- 255 (414)
T 3ndn_A 195 -AGAKVVLDNVFATPLLQQGF-PLGVDVVVYSGTKHID-GQGRVLGGAILGDREYIDGPVQKLM---------------- 255 (414)
T ss_dssp -TTCEEEEECTTTHHHHCCCG-GGTCSEEEEETTTTTT-CSSCCCCEEEEECHHHHTTHHHHHH----------------
T ss_pred -cCCEEEEECCCcccccCCch-hcCCCeEeccCCcccc-CCCCceEEEEEECHHHHHHHHHHHH----------------
Confidence 99999999999866433323 4578999999999999 545 699999887754 333211
Q ss_pred hhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCccc--
Q 010538 317 KRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSY-- 393 (508)
Q Consensus 317 ~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~-- 393 (508)
....++.+....+.+...++. +....++..+.++++.+.|++.+ .++ +..|.-. ..+
T Consensus 256 --------~~~g~~~~~~~a~~~~~~l~~-----l~~r~~~~~~~a~~l~~~L~~~p------~v~~v~~p~l~-~~p~~ 315 (414)
T 3ndn_A 256 --------RHTGPAMSAFNAWVLLKGLET-----LAIRVQHSNASAQRIAEFLNGHP------SVRWVRYPYLP-SHPQY 315 (414)
T ss_dssp --------HHHCCCCCHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHHHHHHTCT------TEEEEECTTST-TSTTH
T ss_pred --------HHcCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCC------CEeEEECCCCC-CCcCH
Confidence 001122232222222222222 45566777888889999998873 454 3333210 000
Q ss_pred -------CCCCceEEEEeeCCCC-CccCHHHHHHHHhhCCCeeccCCCCCch---HHHhhcCCChhhhhhhhhcCCccCC
Q 010538 394 -------HDTGSMVSFNLKRPDG-SWFGYREVEKLASLSGIQLRTGCFCNPG---ACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 394 -------~~~~~~v~~~~~~~~~-~~~~~~~l~~~L~~~gI~v~~g~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
...+++++|.+++... ..-....+.+.|+..++.++.|..|+.. ... ....-++....++|.
T Consensus 316 ~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~-~~~~~~~~~~~~~g~------ 388 (414)
T 3ndn_A 316 DLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATT-THRAMGPEGRAAIGL------ 388 (414)
T ss_dssp HHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGT-TTCTTHHHHHHHTTC------
T ss_pred HHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCcccc-ccccCCHHHHHhcCC------
Confidence 0137899999975300 0011234667777778888888766541 110 000011222333443
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
.++.||+|++..+.++-++.+.++|
T Consensus 389 --------~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 389 --------GDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp --------CTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred --------CCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 4789999999877666666665554
No 173
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.91 E-value=5.5e-24 Score=224.62 Aligned_cols=367 Identities=14% Similarity=0.093 Sum_probs=219.8
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+..|+|+.+..+. +.+.+++.+.+.. ....|.. .....+++++++++++. + +++||+|+|+|+++
T Consensus 41 ~g~~ylD~~~~~~~-~~v~~a~~~~~~~-----~~~~y~~----~~~~~~l~~~la~~~~~--~--~v~~t~ggt~A~~~ 106 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-NAMSDHQWAAMIT-----GDEAYAG----SRNYYDLKDKAKELFNY--D--YIIPAHQGRGAENI 106 (467)
T ss_dssp GGGCSEECSCSSSC-CCEEHHHHHHHHT-----CCCCSSS----CHHHHHHHHHHHHHHCC--C--EEEEESSHHHHHHH
T ss_pred CCceeeecccCcCC-HHHHHHHHHHHhh-----ccccccc----CccHHHHHHHHHHHcCC--C--cEEEcCCcHHHHHH
Confidence 45679999777654 5555555443321 1111211 12356789999999987 4 79999999999999
Q ss_pred HHhhcCCC----CCCe---EEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCC
Q 010538 119 VGEAFPWS----HQSS---YMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 119 ~~~~l~~~----~g~~---vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
++.++ .. +|+. |+++...|+++. ..+...|.+++.++.......+. .....-..|+++++ ++
T Consensus 107 al~~~-~~~~~~~Gd~~~~viv~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~le--~~ 175 (467)
T 1ax4_A 107 LFPVL-LKYKQKEGKAKNPVFISNFHFDTTA---AHVELNGCKAINIVTEKAFDSET-----YDDWKGDFDIKKLK--EN 175 (467)
T ss_dssp HHHHH-HHHHHHTTCCSSCEEEESSCCHHHH---HHHHHTTCEEEECBCGGGGCTTS-----CCTTTTCBCHHHHH--HH
T ss_pred HHHHH-HHhhccCCCccceEEEeccccchhh---HHHhccCCceecccccccccccc-----cCCcccccCHHHHH--HH
Confidence 99988 45 7887 887743334433 33444688888776432100000 00000012678887 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----------CCCCC
Q 010538 192 FPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----------VTQPP 259 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----------g~~~~ 259 (508)
+.+. ..++|++|++++++|++ |.++|.+.+.++++ +|++||+++|+|++|+. +...+
T Consensus 176 i~~~--~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~---------la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~ 244 (467)
T 1ax4_A 176 IAQH--GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYE---------IAKQHGIFVVMDSARFCENAYFIKARDPKYKNA 244 (467)
T ss_dssp HHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHH---------HHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC
T ss_pred HHhc--CCCCeeEEEEeccccCCCccCCChhHHHHHHH---------HHHHcCCEEEEEchhhhhcchhccccccccCCC
Confidence 5321 01368999999999999 89888765444444 34449999999998765 44444
Q ss_pred CCCC------CCCcEEEEeccccccCCCcceEEEEe-c-hhHhhhccccc--cCceEEecccchhhhhhccCccccccCC
Q 010538 260 DLSK------YPVDFVVMSFYKIFGYPTGLGALIMR-N-DAAKLLKNTYF--SGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 260 d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~-~-~~~~~l~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
++.. ..+|++++|+||++|.|.| |+++.+ + ++++.+..... ++. ...+
T Consensus 245 ~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~~---------------------~~~~ 302 (467)
T 1ax4_A 245 TIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF---------------------VTYG 302 (467)
T ss_dssp CHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS---------------------TTTT
T ss_pred chhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhccccccc---------------------cccC
Confidence 4322 2378999999999984535 677677 5 66655443211 110 1123
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC---
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR--- 406 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 406 (508)
+.+...+.++..+++.+.+ ++..++..++++++.+.|++. ++++..+.. +.++++.+..
T Consensus 303 ~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~--------~~~~~~~~~~~~~ 364 (467)
T 1ax4_A 303 GLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREA-------GIPIQYPTG--------GHAVFVDCKKLVP 364 (467)
T ss_dssp TCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC--------SSEEEEESTTTCT
T ss_pred CccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhC-------CCCcccCCC--------ceEEEEehhhhcc
Confidence 4444445555545543211 223344457778888888763 465554432 6788887311
Q ss_pred -CCCCccCHHHHHHHH-hhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-
Q 010538 407 -PDGSWFGYREVEKLA-SLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM- 482 (508)
Q Consensus 407 -~~~~~~~~~~l~~~L-~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~- 482 (508)
.....++..++.+.| .++||.+.+ |..+.... ++ -|. + .....+.+|+|+..+
T Consensus 365 ~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~--------~~-----~g~-----~-----~~~~~~~iRls~~~~~ 421 (467)
T 1ax4_A 365 QIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD--------PA-----TGE-----Q-----KHADMEFMRLTIARRV 421 (467)
T ss_dssp TSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC--------TT-----TCS-----B-----CCCSCCEEEEECCTTS
T ss_pred ccccCCCCHHHHHHHHHHhcCceeeecCccccccc--------cc-----ccc-----c-----cccccceEEEeccccc
Confidence 111112345577777 899999987 54211100 00 000 0 001147899999954
Q ss_pred CCHHHHHHHHHhhhhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNFSQF 504 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~~~~ 504 (508)
+|.+|++++++.|+++++.++.
T Consensus 422 ~t~e~i~~~~~~l~~~~~~~~~ 443 (467)
T 1ax4_A 422 YTNDHMDYIADALIGLKEKFAT 443 (467)
T ss_dssp SCHHHHHHHHHHHHTTHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999998876544
No 174
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.90 E-value=3.4e-22 Score=208.11 Aligned_cols=350 Identities=11% Similarity=0.030 Sum_probs=220.2
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g 111 (508)
++..|+|..+ .+.++|.+++++.+.+ .. .......+ .......++++.++++++.+. + +|++|+|
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~-~~-~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g 110 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQL-KK-LSHTCFQV----LAYEPYLELCEIMNQKVPGDFAK--KTLLVTT 110 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHT-TT-CSCCCTTT----EECHHHHHHHHHHHHHSSCSSCE--EEEEESS
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHH-Hh-CCCccccc----cCCHHHHHHHHHHHHhCCccccc--EEEEeCc
Confidence 4567888753 3446888888876644 22 11111111 123457789999999994333 5 8999999
Q ss_pred hHHHHHHHHh---hcCCCCCCeEEEecccc-cchHHHHHHHHh-------cCC---eEEEEccCCccCcccccccccccc
Q 010538 112 ATAALKLVGE---AFPWSHQSSYMYTMENH-NSVLGIREYALS-------QGA---AAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~---~l~~~~g~~vl~~~~~h-~s~~~~~~~~~~-------~G~---~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+++|+++++. ++ ..++ .|++....| .....+...... .+. .++.+|.+.+.....
T Consensus 111 ~~~a~~~~~~~a~~~-~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~--------- 179 (426)
T 1sff_A 111 GSEAVENAVKIARAA-TKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS--------- 179 (426)
T ss_dssp HHHHHHHHHHHHHHH-HTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC---------
T ss_pred hHHHHHHHHHHHHHh-hCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccc---------
Confidence 9999999987 55 3455 666655444 445445443210 011 266777653110000
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
-..|+++++ +++++. ...+++++|+++...+.||.+.+ +++|.++|++ +|+++|+|++|+
T Consensus 180 -~~~d~~~l~--~~l~~~-~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~------------~~~~li~De~~~ 243 (426)
T 1sff_A 180 -EDDAIASIH--RIFKND-AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE------------HGIMLIADEVQS 243 (426)
T ss_dssp -HHHHHHHHH--HHHHHT-CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHH------------HTCEEEEECTTT
T ss_pred -hHHHHHHHH--HHHHhc-cCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEechhh
Confidence 011566776 444210 01146788888554444997777 7788888886 999999999998
Q ss_pred -CCCCC----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 254 -CVTQP----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 254 -~g~~~----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
++... ++.....+|++ |++|+++ + | +|++++++++++.+.+...+
T Consensus 244 ~~~~~g~~~~~~~~~~~~di~--s~sK~~~-~-GlriG~~~~~~~~~~~l~~~~~~------------------------ 295 (426)
T 1sff_A 244 GAGRTGTLFAMEQMGVAPDLT--TFAKSIA-G-GFPLAGVTGRAEVMDAVAPGGLG------------------------ 295 (426)
T ss_dssp TTTTTSSSSGGGGTTSCCSEE--EECGGGG-T-SSCCEEEEEEHHHHTTSCTTSBC------------------------
T ss_pred ccCcccchhhhhhcCCCCCEE--EEccccc-C-CCceEEEEEcHHHHhhhccCCcC------------------------
Confidence 32211 12222346765 6779999 7 7 69999999887655432100
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
...+.+....+++.++++++.+. .+.+++.++++++.+.|+++.. ..+.+....+ .++++++.+.+
T Consensus 296 ~~~~~~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 361 (426)
T 1sff_A 296 GTYAGNPIACVAALEVLKVFEQE---NLLQKANDLGQKLKDGLLAIAE--KHPEIGDVRG---------LGAMIAIELFE 361 (426)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--TCTTEEEEEE---------ETTEEEEEEBG
T ss_pred cCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEE---------EEEEEEEEEec
Confidence 11234666777778888887653 5678888899999988876410 0022322222 16889998853
Q ss_pred CC----CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 407 PD----GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 407 ~~----~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.. ....+..++.+.|.++||.+++|.. ..+++|+++++.
T Consensus 362 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-------------------------------------~~~~iRi~~~~~ 404 (426)
T 1sff_A 362 DGDHNKPDAKLTAEIVARARDKGLILLSCGP-------------------------------------YYNVLRILVPLT 404 (426)
T ss_dssp GGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------------------------------------TSCEEEECCCTT
T ss_pred CccccCCChHHHHHHHHHHHHCCcEEecCCC-------------------------------------CCCEEEEECCcc
Confidence 10 0112334578888889999988642 147899999999
Q ss_pred CCHHHHHHHHHhhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~~ 502 (508)
+|.+|++++++.|+++++.+
T Consensus 405 ~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 405 IEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887644
No 175
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.90 E-value=2.7e-24 Score=221.74 Aligned_cols=334 Identities=12% Similarity=0.020 Sum_probs=212.8
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-CC--CCCCceEEE-
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-NA--SMKDYKCIF- 108 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~--~~~~~~i~~- 108 (508)
++.+.|..+. ..++++.+.+++.+.. .. .. ...|... ....++|+.+++++ +. +++ +|++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~-~~--~~-~~~y~~~----~g~~~lr~~la~~~~~~~~~~~--~v~~~ 95 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRML-ET--ET-TKTYAGL----SGEPEFQKAMGELILGDGLKSE--TTATL 95 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHH-HH--CC-CCCCCCS----SCCHHHHHHHHHHHHGGGCCGG--GEEEE
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhc-CC--cc-cCCCCCC----CCcHHHHHHHHHHHhCCCCCcc--cEEEE
Confidence 4566666554 2355677777664432 21 01 1112111 11456778888886 54 566 7999
Q ss_pred -cCChHHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchh
Q 010538 109 -TSGATAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPI 184 (508)
Q Consensus 109 -t~g~t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~ 184 (508)
|+|+++|+++++.++. +.+|++|+++...|+++.. .++..|.+++.+|.+ .+..+ |++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~---------------d~~ 157 (394)
T 2ay1_A 96 ATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS---IMNFMGLPVQTYRYFDAETRGV---------------DFE 157 (394)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH---HHHHHTCCEEEEECEETTTTEE---------------CHH
T ss_pred ecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---HHHHcCCceEEEecccccCCcc---------------CHH
Confidence 9999999999987763 2478899988766665544 445569999999985 22333 567
Q ss_pred hhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC------
Q 010538 185 QRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP------ 258 (508)
Q Consensus 185 ~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~------ 258 (508)
+++ +++++. .++++++++++++||||.++|.+++.++++ +|+++|+++|+|++|+.....
T Consensus 158 ~l~--~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~---------~~~~~~~~li~De~~~~~~~~~~~~~~ 223 (394)
T 2ay1_A 158 GMK--ADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIAS---------ILEKTGALPLIDLAYQGFGDGLEEDAA 223 (394)
T ss_dssp HHH--HHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEECCTTSSSCHHHHHH
T ss_pred HHH--HHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEecCccccccCcccchH
Confidence 777 555321 235788889999999999999876655554 344499999999999864321
Q ss_pred -CC-CCCCC-CcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCC
Q 010538 259 -PD-LSKYP-VDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGT 330 (508)
Q Consensus 259 -~d-~~~~~-~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 330 (508)
+. +...+ .++++.|+||++| ++| +|++++ +++.++.+...+.. ..+...++
T Consensus 224 ~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~ 282 (394)
T 2ay1_A 224 GTRLIASRIPEVLIAASCSKNFG-IYRERTGCLLALCADAATRELAQGAMAF--------------------LNRQTYSF 282 (394)
T ss_dssp HHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSS
T ss_pred HHHHHhhcCCCEEEEEeccCCCc-CcCCccceEEEEeCCHHHHHHHHHHHHH--------------------HHhhhcCC
Confidence 21 21222 3477889999998 668 599998 55554333221100 00111123
Q ss_pred CChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 331 ASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 331 ~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
++....+++.++++... ..+++.+.++++++++++.+.|+++.. ..++++..+.. +.++++.++
T Consensus 283 ~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------g~~~~~~~~ 351 (394)
T 2ay1_A 283 PPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSG---SDRFGFVAEHR--------GMFSRLGAT 351 (394)
T ss_dssp CCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---SSTTTHHHHCC--------SSEEECCCC
T ss_pred CChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCeeEEcCCc--------eEEEeeCCC
Confidence 34555555555555320 124788899999999999999987620 00244443332 566665442
Q ss_pred CCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 406 RPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 406 ~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
...+.+.|.++||.+++ .+|+|++ .+|.
T Consensus 352 --------~~~~~~~l~~~gi~v~~-------------------------------------------~~Ris~~-~~~~ 379 (394)
T 2ay1_A 352 --------PEQVKRIKEEFGIYMVG-------------------------------------------DSRINIA-GLND 379 (394)
T ss_dssp --------HHHHHHHHHHHCEECCT-------------------------------------------TCEEEGG-GCCT
T ss_pred --------HHHHHHHHHhCCEEecC-------------------------------------------CCeEEee-cCCH
Confidence 12477888889999764 1699999 5899
Q ss_pred HHHHHHHHhhhhh
Q 010538 486 EDAKVNRCSSFDF 498 (508)
Q Consensus 486 eev~~l~~~~~~~ 498 (508)
+|+++++++|++.
T Consensus 380 ~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 380 NTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc
Confidence 9999999998864
No 176
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.90 E-value=4e-22 Score=209.03 Aligned_cols=363 Identities=10% Similarity=0.064 Sum_probs=218.4
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcC----
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFP---- 124 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~---- 124 (508)
...+++.+++++.+.+. ..+ +.. .....++++.+++++|++ ++++++|+|+|+++++.++.
T Consensus 38 ~~~~~~~~~~a~~~~~~-~~~------~~~----~~~~~~l~~~la~~~g~~----~~i~~~sGt~a~~~al~~l~~~~~ 102 (437)
T 3bb8_A 38 GKVIGTKELQLMVEASL-DGW------LTT----GRFNDAFEKKLGEYLGVP----YVLTTTSGSSANLLALTALTSPKL 102 (437)
T ss_dssp CCCCCHHHHHHHHHHHH-HCC------CBS----CHHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCGGG
T ss_pred CCCCCHHHHHHHHHHHH-cCC------cCC----ChHHHHHHHHHHHHHCCC----cEEEeCCHHHHHHHHHHHhhhccc
Confidence 34457788888766543 211 121 234788999999999986 46888888899999999884
Q ss_pred ----CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCCCCCCCCCC
Q 010538 125 ----WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAG 199 (508)
Q Consensus 125 ----~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~ 199 (508)
.++|++|+++..+|+++...+. ..|++++.++.+. ++.+ |+++++ +++ +
T Consensus 103 ~~~~~~~gd~Vi~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~~~---------------d~~~l~--~~i------~ 156 (437)
T 3bb8_A 103 GVRALKPGDEVITVAAGFPTTVNPTI---QNGLIPVFVDVDIPTYNV---------------NASLIE--AAV------S 156 (437)
T ss_dssp GGGSCCTTCEEEECSSSCHHHHHHHH---HTTCEEEECCEETTTTEE---------------CGGGHH--HHC------C
T ss_pred ccccCCCcCEEEECCCCcHHHHHHHH---HcCCEEEEEeccCccCCc---------------CHHHHH--Hhc------C
Confidence 5778999999999988876544 4699999998864 3444 577887 444 4
Q ss_pred CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCC--CcEEEEeccccc
Q 010538 200 DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYP--VDFVVMSFYKIF 277 (508)
Q Consensus 200 ~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~--~D~~~~S~~K~~ 277 (508)
++|++|++++ ++|...|+++|.++|++ +|+++|+|++|+.|..+ +...++ .|+++.|++|..
T Consensus 157 ~~~~~v~~~~---~~g~~~~~~~i~~l~~~------------~~~~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k 220 (437)
T 3bb8_A 157 DKTKAIMIAH---TLGNLFDLAEVRRVADK------------YNLWLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAK 220 (437)
T ss_dssp TTEEEEEEEC---GGGCCCCHHHHHHHHHH------------HTCEEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTS
T ss_pred CCCeEEEEeC---CCCChhcHHHHHHHHHH------------cCCEEEEECccccCceE-CCeecccccCEEEEECcCCc
Confidence 5789999876 46888999999999998 89999999999988765 555555 799888875543
Q ss_pred cCCCc-ceEEEEechhHhhhccccccCceE------EecccchhhhhhccCccccc-c----------CCCCChhHHHHH
Q 010538 278 GYPTG-LGALIMRNDAAKLLKNTYFSGGTV------AASIADIDFVKRRQGVEELF-E----------DGTASFLSIASI 339 (508)
Q Consensus 278 g~P~G-~G~l~~~~~~~~~l~~~~~g~~~~------~~~~~~~~~~~~~~~~~~~~-~----------~gt~~~~~~~~l 339 (508)
+.|.| .|+++.+++.+..+.+....++.. ........+.......+.++ + .++.++...+++
T Consensus 221 ~l~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l 300 (437)
T 3bb8_A 221 HITMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL 300 (437)
T ss_dssp SSCCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHH
Confidence 32333 478777766544332211111110 00000000000000000011 1 112233333333
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc--eEEEEeeCCCCCccCHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS--MVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l 417 (508)
. +++. +++..++.+++++++.+.|++++ ++.++..... .+..+ .+.+.++...+ .+..++
T Consensus 301 ~-~l~~-----~~~~~~~~~~~~~~l~~~L~~~~------g~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~l 362 (437)
T 3bb8_A 301 A-QLER-----IEEFVEKRKANFKYLKDALQSCA------DFIELPEATE----NSDPSWFGFPITLKEDSG--VSRIDL 362 (437)
T ss_dssp H-HHHH-----HHHHHHHHHHHHHHHHHHGGGGT------TTEECCCCCT----TEECCCSSEEEEECGGGS--SCHHHH
T ss_pred H-HHHH-----HHHHHHHHHHHHHHHHHHhhccC------CccccCCCCC----CCceeeEEEEEEECCcCc--CcHHHH
Confidence 2 2332 24555566889999999998873 4555432110 00112 22233321101 234568
Q ss_pred HHHHhhCCCeeccCCC--CCc-hHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 418 EKLASLSGIQLRTGCF--CNP-GACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 418 ~~~L~~~gI~v~~g~~--~~~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
.+.|.++||.++.+.. |.. +.. +.++. ..+.+|+.. .....+.+|++++.++|.+||+++++.
T Consensus 363 ~~~L~~~GI~v~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~----------~~~~~~~lrl~~~~~~t~~di~~i~~~ 428 (437)
T 3bb8_A 363 VKFLDEAKVGTRLLFAGNLTRQPYF-HDVKY---RVVGELTNT----------DRIMNQTFWIGIYPGLTHDHLDYVVSK 428 (437)
T ss_dssp HHHHHHTTBCCBCCTTSSGGGSGGG-SSCCC---EECSCCHHH----------HHHHHHEEEECCSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCceeccCCcccccCchh-hccCc---cccCCCcHH----------HHHhcCEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999998754 211 110 00000 000111100 001246799999999999999999999
Q ss_pred hhhhhh
Q 010538 495 SFDFVN 500 (508)
Q Consensus 495 ~~~~~~ 500 (508)
|+++++
T Consensus 429 l~~~~~ 434 (437)
T 3bb8_A 429 FEEFFG 434 (437)
T ss_dssp HHHHTT
T ss_pred HHHHHc
Confidence 988764
No 177
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.90 E-value=4.2e-24 Score=220.28 Aligned_cols=323 Identities=12% Similarity=-0.007 Sum_probs=206.6
Q ss_pred CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc---C---CCCCCceEEE--cCChHHHHHHHH
Q 010538 49 ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF---N---ASMKDYKCIF--TSGATAALKLVG 120 (508)
Q Consensus 49 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~---~---~~~~~~~i~~--t~g~t~al~~~~ 120 (508)
..++++.+.+++.+.+ ... .. ..|.. .....++|+.+++++ + ++++ +|++ |+|+++|+++++
T Consensus 42 ~~~~~~~v~~a~~~~~-~~~--~~-~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~~--~v~~~~~~g~~~a~~~~~ 111 (396)
T 2q7w_A 42 KTPVLTSVKKAEQYLL-ENE--TT-KNYLG----IDGIPEFGRCTQELLFGKGSALINDK--RARTAQTPGGTGALRVAA 111 (396)
T ss_dssp CCCCCHHHHHHHHHHH-HHC--CC-CCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEEESHHHHHHHHHH
T ss_pred CccCcHHHHHHHHhhc-Ccc--cc-cCCCC----CCCCHHHHHHHHHHHhcCCCCccccc--cEEEEecccchhhHHHHH
Confidence 3466788887765433 211 11 11211 112466788888887 2 2466 7888 999999999998
Q ss_pred hhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchhhhhcCCCCCCCCC
Q 010538 121 EAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDP 197 (508)
Q Consensus 121 ~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~ 197 (508)
.++. +.+|++|++....|+++. ..++..|.+++.+|.+ .+..+ |+++++ +++++.
T Consensus 112 ~~~~~~~~gd~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~l~~~-- 169 (396)
T 2q7w_A 112 DFLAKNTSVKRVWVSNPSWPNHK---SVFNSAGLEVREYAYYDAENHTL---------------DFDALI--NSLNEA-- 169 (396)
T ss_dssp HHHHHHSCCCEEEEEESCCTHHH---HHHHHTTCEEEEEECEETTTTEE---------------CHHHHH--HHHTTC--
T ss_pred HHHHHhCCCCEEEEcCCCchhHH---HHHHHcCCceEEEecccCCCCCc---------------CHHHHH--HHHHhC--
Confidence 7653 357899998887666654 4455579999999984 22333 577777 555321
Q ss_pred CCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-----CCCC---C-CCCcE
Q 010538 198 AGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-----PDLS---K-YPVDF 268 (508)
Q Consensus 198 ~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-----~d~~---~-~~~D~ 268 (508)
.++++++++++++||||.++|.+++.++++ +|+++|+++|+|++|+..... .++. . .+.++
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQ---------LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 245789999999999999999876555554 344599999999998753221 1221 1 13468
Q ss_pred EEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHH
Q 010538 269 VVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGF 343 (508)
Q Consensus 269 ~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al 343 (508)
++.|+||++| ++| +|++++ +++.++.+...+.. ..+...++++.....++.+++
T Consensus 240 ~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l 298 (396)
T 2q7w_A 240 VASSYSXNFG-LYNERVGACTLVAADSETVDRAFSQMKA--------------------AIRANYSNPPAHGASVVATIL 298 (396)
T ss_dssp EEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCHHHHHHHHHHH
T ss_pred EEEecccccc-ccccccceEEEEcCCHHHHHHHHHHHHH--------------------HHhhccCCCCcHHHHHHHHHh
Confidence 8999999999 778 699997 45433322211100 001112334555555555555
Q ss_pred HHH-----HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCc-eEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHH
Q 010538 344 NLI-----NSLTVPAICRHIASLGMYVRKVLLSLRHENGAD-VCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREV 417 (508)
Q Consensus 344 ~~~-----~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 417 (508)
+.. -..+++++.+++.++++++.+.|+++.. + ++++..+.. +.++++.++ ...+
T Consensus 299 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~--------~~~~~~~~~--------~~~~ 358 (396)
T 2q7w_A 299 SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA----NRDFSFIIKQN--------GMFSFSGLT--------KEQV 358 (396)
T ss_dssp TSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTC----CSCCTHHHHCC--------SSEEECCCC--------HHHH
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcceecCCC--------ceEEEecCC--------HHHH
Confidence 422 0124677888999999999999988620 0 244444332 455554332 2347
Q ss_pred HHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 418 EKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 418 ~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
.+.|.++||.+++ .+|||++.. |.+|+++++++|++
T Consensus 359 ~~~l~~~gv~v~~-------------------------------------------~~Ris~~~~-~~e~i~~~~~~l~~ 394 (396)
T 2q7w_A 359 LRLREEFGVYAVA-------------------------------------------SGRVNVAGM-TPDNMAPLCEAIVA 394 (396)
T ss_dssp HHHHHHHCEECCT-------------------------------------------TCEEEGGGC-CTTTHHHHHHHHHH
T ss_pred HHHHHhcCeeecC-------------------------------------------CceEEEeec-CHHHHHHHHHHHHh
Confidence 7788889999764 269999954 99999999999886
Q ss_pred h
Q 010538 498 F 498 (508)
Q Consensus 498 ~ 498 (508)
.
T Consensus 395 ~ 395 (396)
T 2q7w_A 395 V 395 (396)
T ss_dssp H
T ss_pred c
Confidence 5
No 178
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.90 E-value=1.6e-23 Score=217.41 Aligned_cols=340 Identities=14% Similarity=0.021 Sum_probs=217.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-CC-----CCCCceE
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF-NA-----SMKDYKC 106 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~-----~~~~~~i 106 (508)
++.+.|..+.. .++++.+.+++.+ .... ... ...|.. .....++|+.+++++ +. +++ +|
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~-~~~~-~~~-~~~y~~----~~g~~~lr~~la~~~~~~~~~~~~~~--~v 100 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQR-IANN-SSL-NHEYLP----ILGLAEFRTCASRLALGDDSPALQEK--RV 100 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHH-HHTC-TTC-CCCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTT--CE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHH-hhhC-hhh-ccCCCC----CCCCHHHHHHHHHHHhcCCCCccCCC--cE
Confidence 45666666542 3456777776644 3311 001 111211 112466788888888 43 667 89
Q ss_pred EE--cCChHHHHHHHHhhcC-CCCC-----CeEEEecccccchHHHHHHHHhcCCe-EEEEccC--CccCcccccccccc
Q 010538 107 IF--TSGATAALKLVGEAFP-WSHQ-----SSYMYTMENHNSVLGIREYALSQGAA-AFAIDVE--EAVDNDGLSESLVT 175 (508)
Q Consensus 107 ~~--t~g~t~al~~~~~~l~-~~~g-----~~vl~~~~~h~s~~~~~~~~~~~G~~-v~~v~~~--~~~~~~~l~~~~~~ 175 (508)
++ |+|+++|+.+++..+. ..+| ++|+++...|+++. ..++..|.+ ++.+|.+ .+..+
T Consensus 101 ~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~--------- 168 (412)
T 1ajs_A 101 GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHN---GVFTTAGFKDIRSYRYWDTEKRGL--------- 168 (412)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHH---HHHHHTTCSCEEEEECEETTTTEE---------
T ss_pred EEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHH---HHHHHcCCceeEEEeeecCCCCcc---------
Confidence 99 9999999999864321 3577 89998887777654 444557999 9999884 22223
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC- 254 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~- 254 (508)
|+++++ +++.+ ..++++++++++++||||.++|.+.+.++++ +|+++|+++|+|++++.
T Consensus 169 ------d~~~l~--~~l~~---~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~y~~~ 228 (412)
T 1ajs_A 169 ------DLQGFL--SDLEN---APEFSIFVLHACAHNPTGTDPTPEQWKQIAS---------VMKRRFLFPFFDSAYQGF 228 (412)
T ss_dssp ------CHHHHH--HHHHH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTT
T ss_pred ------CHHHHH--HHHHh---CCCCcEEEEECCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEEcccccc
Confidence 577777 55532 1346789989999999999999876555554 34449999999999653
Q ss_pred CCC-----CCCCC----CCCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhcc
Q 010538 255 VTQ-----PPDLS----KYPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 255 g~~-----~~d~~----~~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
+.. ...+. ..+.++++.|+||.+| |+| +|++++ +++.++.+...+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~------------------ 289 (412)
T 1ajs_A 229 ASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFG-LYNERVGNLTVVAKEPDSILRVLSQMQK------------------ 289 (412)
T ss_dssp TTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHHH------------------
T ss_pred cCCcccccchHHHHHhccCCcEEEEEecccccC-CCCcceEEEEEecCCHHHHHHHHHHHHH------------------
Confidence 322 11121 1133488999999999 778 799999 66643332111000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCC
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHD 395 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 395 (508)
..+...++++....+++.++++... ...++.++++++++++++.+.|+++.. +.++++..+..
T Consensus 290 --~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~------- 357 (412)
T 1ajs_A 290 --IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT---PGTWNHITDQI------- 357 (412)
T ss_dssp --HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---SSCCHHHHHCC-------
T ss_pred --HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCeeEEcCCC-------
Confidence 0111123345555666666766432 224688899999999999999988620 01255444332
Q ss_pred CCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 396 TGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 396 ~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
+.++++.++ ...+.+.+.++||.+++ .+
T Consensus 358 -~~~~~~~~~--------~~~~~~~l~~~gv~v~~-------------------------------------------~~ 385 (412)
T 1ajs_A 358 -GMFSFTGLN--------PKQVEYLINQKHIYLLP-------------------------------------------SG 385 (412)
T ss_dssp -SSEEECCCC--------HHHHHHHHHTTCEECCT-------------------------------------------TS
T ss_pred -ceEEEeCCC--------HHHHHHHHHhCCEEecC-------------------------------------------Cc
Confidence 455544332 23466778889999764 16
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|+|++. .|.+|++++++.|+++++.+|
T Consensus 386 Ris~~~-~~~~~i~~~~~~l~~~l~~~~ 412 (412)
T 1ajs_A 386 RINMCG-LTTKNLDYVATSIHEAVTKIQ 412 (412)
T ss_dssp EEEGGG-CCTTTHHHHHHHHHHHHHHCC
T ss_pred EEEeee-CCHHHHHHHHHHHHHHHHhcC
Confidence 999994 589999999999998876543
No 179
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.83 E-value=1.3e-25 Score=231.73 Aligned_cols=338 Identities=10% Similarity=0.014 Sum_probs=218.9
Q ss_pred CCeeeeCCCCC-CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHH----cC--CCCCCceEEEcCCh
Q 010538 40 GTVYLDHAGAT-LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDY----FN--ASMKDYKCIFTSGA 112 (508)
Q Consensus 40 ~~iyld~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~~--~~~~~~~i~~t~g~ 112 (508)
+.+.|..+... ++++.+.+++.+.. .. ....|... ..++++.++++ +| ++++ +|++|+|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~-~~----~~~~y~~~------~~~l~~~la~~l~~~~g~~~~~~--~v~~~~g~ 98 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYA-EQ----LVYGYTYA------SDELLQAVLDWEKSEHQYSFDKE--DIVFVEGV 98 (392)
Confidence 55666655543 23455656554433 11 11112111 33445555554 45 5666 89999999
Q ss_pred HHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-ccCccccccccccccccccchhhhhcCCC
Q 010538 113 TAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE-AVDNDGLSESLVTSTKISLLPIQRRKGAS 191 (508)
Q Consensus 113 t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~~~ 191 (508)
++|+.+++.++ .++|++|++....|+++... ++..|.+++.+|.+. ++.. ..|+++++ ++
T Consensus 99 ~~a~~~~~~~~-~~~gd~vl~~~p~~~~~~~~---~~~~g~~~~~~~~~~~~g~~-------------~~d~~~l~--~~ 159 (392)
T 3b1d_A 99 VPAISIAIQAF-TKEGEAVLINSPVYPPFARS---VRLNNRKLVSNSLKEENGLF-------------QIDFEQLE--ND 159 (392)
Confidence 99999999998 67889999888777766544 344588888888752 2211 11567777 55
Q ss_pred CCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCC----CCCCCCC----
Q 010538 192 FPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVT----QPPDLSK---- 263 (508)
Q Consensus 192 l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~----~~~d~~~---- 263 (508)
+. .+++++|++++++||||.++|.+.+.++++ +|+++|+++|+|++|+... .+.++..
T Consensus 160 l~-----~~~~~~v~~~~~~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 225 (392)
T 3b1d_A 160 IV-----ENDVKLYLLCNPHNPGGRVWEREVLEQIGH---------LCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPD 225 (392)
Confidence 53 146788999999999999999666555555 4555999999999997622 2223321
Q ss_pred -CCCcEEEEeccccccCCCc--ceEEEEech-hHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 264 -YPVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 264 -~~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
.+.++++.|++|++| .+| +|+++++++ +++.+...... +..++++....+++
T Consensus 226 ~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~a~ 281 (392)
T 3b1d_A 226 FKDFALVLSSATKTFN-IAGTKNSYAIIENPTLCAQFKHQQLV-----------------------NNHHEVSSLGYIAT 281 (392)
Confidence 345688999999997 445 799998754 66555433111 11123444445555
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc-ccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHH
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLS-LRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVE 418 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 418 (508)
.++++.. +..++++++++.++++++.+.|++ + +++++..+.+ +.+++++++... .+..++.
T Consensus 282 ~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~--------~~~~~i~~~~~~---~~~~~l~ 343 (392)
T 3b1d_A 282 ETAYRYG-KPWLVALKAVLEENIQFAVEYFAQEA------PRLKVMKPQG--------TYLIWLDFSDYG---LTDDALF 343 (392)
Confidence 5566532 234678888899999999999987 5 3676665442 455567775420 1122366
Q ss_pred HHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhh
Q 010538 419 KLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFD 497 (508)
Q Consensus 419 ~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~ 497 (508)
+.| +++||.+++|..|... .++++|++++. +.++++.+++.|++
T Consensus 344 ~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 344 TLLHDQAKVILNRGSDYGSE---------------------------------GELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 777 4789999998755321 25789999885 68999999998887
Q ss_pred hhh
Q 010538 498 FVN 500 (508)
Q Consensus 498 ~~~ 500 (508)
.++
T Consensus 389 ~l~ 391 (392)
T 3b1d_A 389 CLP 391 (392)
Confidence 653
No 180
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=8.1e-24 Score=215.21 Aligned_cols=296 Identities=10% Similarity=0.007 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCe--EEEecccccchHHHHHHHHhcCCeEEEEccC
Q 010538 84 DIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSS--YMYTMENHNSVLGIREYALSQGAAAFAIDVE 161 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~--vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~ 161 (508)
...++++++++++++.+.. ++++|+++|+.+++.++. .+|+. |+++...|++...........|.+++.+|.+
T Consensus 48 ~~~~~l~~~la~~~~~~~~----i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQSA----VFFPSGTMAQQIALRIWA-DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA 122 (359)
T ss_dssp HHHHHHHHHHHHHHTCSEE----EEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT
T ss_pred HHHHHHHHHHHHHhCCCcE----EEeCCHHHHHHHHHHHHH-hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCc
Confidence 4578899999999998643 555888899999998884 44444 6666666654432222223358999998873
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
++.+ |+++++ ++ .+++++|++++++|++ |.++|.+++.++++ +|+
T Consensus 123 -~~~~---------------d~~~l~--~~-------~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~---------~~~ 168 (359)
T 3pj0_A 123 -NQLL---------------TIDDIK--SL-------REPVSSVLIELPQREIGGQLPAFEELEKISE---------YCH 168 (359)
T ss_dssp -TSCC---------------CHHHHH--TC-------SSCCSEEEEESSBGGGTSBCCCHHHHHHHHH---------HHH
T ss_pred -CCCc---------------CHHHHH--hc-------cCCceEEEEEecccCCCcccCCHHHHHHHHH---------HHH
Confidence 3444 688898 33 4678999999999988 79999888844444 333
Q ss_pred CCCeEEEEeccccCCC------CCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc--ccCceEEecccc
Q 010538 241 KGRWMVLIDAAKGCVT------QPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY--FSGGTVAASIAD 312 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~------~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~ 312 (508)
++|+++|+|+++..+. .+.++. .++|+++.|+||++++|.| |+++.++++++.+.... .++.
T Consensus 169 ~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~-------- 238 (359)
T 3pj0_A 169 EQGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGD-------- 238 (359)
T ss_dssp HHTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC--------
T ss_pred HcCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCC--------
Confidence 4999999999876433 111121 2579999999998887866 88888988877665421 1110
Q ss_pred hhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEec-CCCCCc
Q 010538 313 IDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYG-TYTSEV 391 (508)
Q Consensus 313 ~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~-~~~~~~ 391 (508)
..+.+....+++ .+++.. . +..++..++++++.+.|+++ +++++.. +..
T Consensus 239 ---------------~~~~~~~~~a~~-~~l~~~----~-~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~--- 288 (359)
T 3pj0_A 239 ---------------LISLYPYILSAD-YYFEKR----I-GKMAEYFEAAKGLAERFNSC------SGVKTVPEVPV--- 288 (359)
T ss_dssp ---------------CSCCHHHHHHHH-HHHHHH----G-GGHHHHHHHHHHHHHHHHTS------TTEEEESSSCS---
T ss_pred ---------------cchhHHHHHHHH-HHHHHH----H-HHhHHHHHHHHHHHHHHhhC------CCceeeccCCc---
Confidence 011112222222 233322 2 33345678889999999987 4788753 332
Q ss_pred ccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 392 SYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 392 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
++++++.++.... .+...+.+.|.++||.+++|..+..+ .
T Consensus 289 -----~~~~~~~~~~~~~--~~~~~l~~~l~~~GV~v~~g~~~~~~---------------------------------~ 328 (359)
T 3pj0_A 289 -----SNMFHVYFENSAD--EIGAILTKIQDETGVGISGYLQEKSA---------------------------------D 328 (359)
T ss_dssp -----SSEEEEEESSCHH--HHHHHHHHHHHHHCEECCSCCEEEET---------------------------------T
T ss_pred -----ceEEEEEecCccc--hhHHHHHHHHHhcCcEecCCccccCC---------------------------------C
Confidence 7888888864311 12345888999999999998543221 2
Q ss_pred CceEEEecCC---CCCHHHHHHHHHhhhhh
Q 010538 472 TGAIRVSFGY---MSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 472 ~~~iRis~~~---~~t~eev~~l~~~~~~~ 498 (508)
.+++|++++. ..+.++++..++.|.+.
T Consensus 329 ~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 329 VCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 5789998863 35788888888887653
No 181
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.90 E-value=3.1e-23 Score=213.83 Aligned_cols=329 Identities=15% Similarity=0.056 Sum_probs=206.8
Q ss_pred eCCCCCCCCHHHHHHHHH-HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC------CCCCceEEEcCChHHHHH
Q 010538 45 DHAGATLYSELQMEAIFR-DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA------SMKDYKCIFTSGATAALK 117 (508)
Q Consensus 45 d~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~~i~~t~g~t~al~ 117 (508)
|..+.+++++.+.+++.+ ... .. . ...|... ....++|+.++++++. +++..+|++|+|+|+|++
T Consensus 38 d~~~~~~~~~~v~~a~~~~~~~-~~-~--~~~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~ 109 (397)
T 3fsl_A 38 NEDGIIPQLQAVAEAEARLNAQ-PH-G--ASLYLPM----EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALK 109 (397)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHS-CC-C--CCCCCCT----TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHhhccC-cc-c--cccCCCC----CchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHH
Confidence 444566666888888765 442 10 0 1112111 1135567777777754 333114899999999999
Q ss_pred HHHh--hcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchhhhhcCCCCC
Q 010538 118 LVGE--AFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPIQRRKGASFP 193 (508)
Q Consensus 118 ~~~~--~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~ 193 (508)
+++. ++ ..+|++|+++...|+++. ..++..|.+++.+|.. ++..+ |+++++ ++++
T Consensus 110 ~~~~~~~~-~~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~---------------d~~~l~--~~l~ 168 (397)
T 3fsl_A 110 VGADFLKR-YFPESGVWVSDPTWENHV---AIFAGAGFEVSTYPWYDEATNGV---------------RFNDLL--ATLK 168 (397)
T ss_dssp HHHHHHHH-HCTTCCEEEESSCCHHHH---HHHHHTTCCEEEECCEETTTTEE---------------CHHHHH--HHHT
T ss_pred HHHHHHHh-cCCCCeEEEeCCCchhHH---HHHHHcCCceEEEeeeeccCCcC---------------cHHHHH--HHHH
Confidence 9853 44 578899998886666554 4455679999999983 23333 577887 6664
Q ss_pred CCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC-----CC----CCC
Q 010538 194 ERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP-----DL----SKY 264 (508)
Q Consensus 194 ~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-----d~----~~~ 264 (508)
+ ..++++++++++++||||.+++.+++.++++ +|+++|+++|+|++++...... .+ ...
T Consensus 169 ~---~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 236 (397)
T 3fsl_A 169 T---LQAGSIVLLHPCCHNPTGADLTNDQWDAVIE---------ILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAG 236 (397)
T ss_dssp T---CCTTCEEEECSSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred h---CCCCCEEEEeCCCCCCCCcCCCHHHHHHHHH---------HHHhCCEEEEEecCchhhccCcccccHHHHHHHhcC
Confidence 2 1367899999999999999999885555554 3445999999999987544321 11 122
Q ss_pred CCcEEEEeccccccCCCc--ceEEEEe---chhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 265 PVDFVVMSFYKIFGYPTG--LGALIMR---NDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 265 ~~D~~~~S~~K~~g~P~G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+..+++.|++|.+| ++| +|++++. ++.++.+...... ..+...++++.....++
T Consensus 237 ~~~i~~~S~SK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 295 (397)
T 3fsl_A 237 LPALVSNSFSKIFS-LYGERVGGLSVMCEDAEAAGRVLGQLKA--------------------TVRRNYSSPPNFGAQVV 295 (397)
T ss_dssp CCEEEEEECTTTTT-CGGGCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHH
T ss_pred CCEEEEeccccccc-CcCCCeeEEEEecCCHHHHHHHHHHHHH--------------------HHHhccCCCCHHHHHHH
Confidence 45688999999999 767 7998863 3333322211000 00011123333334444
Q ss_pred HHHHHHH-----HhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 340 RHGFNLI-----NSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 340 ~~al~~~-----~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
..++... ....+++++++++++++++.+.|+++.. ..++++..+.. +.++++.++ .
T Consensus 296 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------~~~~~~~~~--------~ 356 (397)
T 3fsl_A 296 AAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMP---ERNFDYLLNQR--------GMFSYTGLS--------A 356 (397)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---TSCCTHHHHCC--------SSEEECCCC--------H
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCceeecCCc--------eEEEecCCC--------H
Confidence 3333311 0223678889999999999999988631 00354444432 455554432 2
Q ss_pred HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHh
Q 010538 415 REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCS 494 (508)
Q Consensus 415 ~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~ 494 (508)
..+.+.|.++||.+++| + |+|++..+ .++|+++++.
T Consensus 357 ~~~~~~l~~~gi~v~~g-----------------------------------------~--Ris~~~~~-~~~i~~~~~~ 392 (397)
T 3fsl_A 357 AQVDRLREEFGVYLIAS-----------------------------------------G--RMCVAGLN-TANVQRVAKA 392 (397)
T ss_dssp HHHHHHHHTTCEECCTT-----------------------------------------C--EEEGGGCC-TTTHHHHHHH
T ss_pred HHHHHHHHhCCEEECCC-----------------------------------------C--eEEEEecC-HhhHHHHHHH
Confidence 34778888999998763 2 99997554 4679999999
Q ss_pred hhhh
Q 010538 495 SFDF 498 (508)
Q Consensus 495 ~~~~ 498 (508)
|++.
T Consensus 393 l~~~ 396 (397)
T 3fsl_A 393 FAAV 396 (397)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8765
No 182
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.90 E-value=1.4e-21 Score=201.97 Aligned_cols=331 Identities=13% Similarity=0.079 Sum_probs=219.5
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++.+ .+|.+.+++.+.. ......+ ..+ ......+++++++++++.+ ++++|+|+
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~-~~~~~~~-~~~-----~~~~~~~l~~~la~~~~~~----~v~~~~gg 105 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQA-SKFWHTG-NGY-----TNEPVLRLAKKLIDATFAD----RVFFCNSG 105 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-TTCSCCC-TTS-----CCHHHHHHHHHHHHHSSCS----EEEEESSH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHH-Hhccccc-CCc-----CCHHHHHHHHHHHhhCCCC----eEEEeCcH
Confidence 5677999876522 3788888876644 3222111 111 1345678899999999754 69999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccch-HHHHHHHHhc---------CCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSV-LGIREYALSQ---------GAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~-~~~~~~~~~~---------G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
|+|+.+++.++.. .+++.|++....|+.+ ..+....... +..+..+|.
T Consensus 106 ~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 170 (406)
T 4adb_A 106 AEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY--------------- 170 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT---------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC---------------
Confidence 9999999988732 3337777776555554 3333221000 012222322
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc--C---HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF--N---LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~--~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
.|+++++ +++ .+++++|+++ ++|++|.++ + +++|.++|++ +|+++|+|+
T Consensus 171 -----~d~~~l~--~~l------~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~------------~~~~li~De 224 (406)
T 4adb_A 171 -----NDINSAS--ALI------DDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNR------------HNALLIFDE 224 (406)
T ss_dssp -----TCHHHHH--TTC------STTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHH------------TTCEEEEEC
T ss_pred -----CcHHHHH--HHh------cCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 1578888 555 4678999999 789999877 4 5566666665 999999999
Q ss_pred ccc-CCCCC--C--CCCCCCCcEEEEeccccccCCC-cceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPT-GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+|+ ++... + +......|++ ++||+++ |+ .+|++++++++++.+.+...+.
T Consensus 225 ~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~--------------------- 280 (406)
T 4adb_A 225 VQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLATEECARVMTVGTHGT--------------------- 280 (406)
T ss_dssp TTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHHTCCTTSSCC---------------------
T ss_pred cccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEcHHHHhhhccCCcCC---------------------
Confidence 996 32221 1 1112346777 4589998 52 2899999999887766542111
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
..+.+....+++.++++.+.. +++.++++++++++.+.|+++.. .+.++.... ..+.++++.+
T Consensus 281 ---~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~------~~g~~~~~~~ 343 (406)
T 4adb_A 281 ---TYGGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINH-----RYGLFSEVR------GLGLLIGCVL 343 (406)
T ss_dssp ---SSTTCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH-----HHCCEEEEE------EETTEEEEEE
T ss_pred ---CCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH-----hCCCceEEE------EEEEEEEEEE
Confidence 123455666666777776533 78889999999999999987521 111111110 1268889988
Q ss_pred eCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCC
Q 010538 405 KRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMST 484 (508)
Q Consensus 405 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t 484 (508)
++... .+..++.+.|.++||.++++. .+++|+++++.+|
T Consensus 344 ~~~~~--~~~~~~~~~l~~~gi~v~~~~---------------------------------------~~~iRi~~~~~~~ 382 (406)
T 4adb_A 344 NADYA--GQAKQISQEAAKAGVMVLIAG---------------------------------------GNVVRFAPALNVS 382 (406)
T ss_dssp CTTTT--TCHHHHHHHHHHTTEECEESS---------------------------------------TTEEEECCCTTCC
T ss_pred eCCcH--HHHHHHHHHHHHCCcEEeecC---------------------------------------CCeEEEECCCCCC
Confidence 75321 134568888988999988742 5789999999999
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~~ 503 (508)
.+|++++++.|+++++.++
T Consensus 383 ~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 383 EEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 183
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.90 E-value=9.6e-24 Score=219.13 Aligned_cols=329 Identities=12% Similarity=0.012 Sum_probs=211.2
Q ss_pred eeeCCCCCCCCHHHHHHHHH-HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC------CCCCCceEEE--cCChH
Q 010538 43 YLDHAGATLYSELQMEAIFR-DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN------ASMKDYKCIF--TSGAT 113 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~~i~~--t~g~t 113 (508)
|+|+++.+++++.+.+++.+ .+ .. .. ...|.. .....++|+.++++++ ++++ +|++ |+|++
T Consensus 39 ~~d~~~~~~~~~~v~~a~~~~~~-~~--~~-~~~y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~t~g~~ 108 (412)
T 1yaa_A 39 YRDDNGKPWVLPSVKAAEKLIHN-DS--SY-NHEYLG----ITGLPSLTSNAAKIIFGTQSDALQED--RVISVQSLSGT 108 (412)
T ss_dssp CBCTTSCBCCCHHHHHHHHHHHT-CT--TC-CCCCCC----TTCCHHHHHHHHHHHHCTTCHHHHTT--CEEEEEEEHHH
T ss_pred eeCCCCCCCCcHHHHHHHHhhhc-Cc--cc-ccCCCC----CCCcHHHHHHHHHHHhcCCCCCCCcc--eEEEEeccchH
Confidence 33444445677888777654 33 21 00 111211 1124567788888773 2566 7999 99999
Q ss_pred HHHHHHH--hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEcc-CC-ccCccccccccccccccccchhhhhcC
Q 010538 114 AALKLVG--EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDV-EE-AVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 114 ~al~~~~--~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~-~~-~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
+|+++++ ..+ +.+|++|+++...|+++.. .++..|.+++.+|. +. +..+ |+++++
T Consensus 109 ~a~~~~~~~~~~-~~~gd~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~-- 167 (412)
T 1yaa_A 109 GALHISAKFFSK-FFPDKLVYLSKPTWANHMA---IFENQGLKTATYPYWANETKSL---------------DLNGFL-- 167 (412)
T ss_dssp HHHHHHHHHHHH-HCTTCCEEEEESCCTTHHH---HHHTTTCCEEEEECEETTTTEE---------------CHHHHH--
T ss_pred hHHHHHHHHHHH-hCCCCEEEEeCCCCccHHH---HHHHcCceEEEEeeecCCCCcc---------------CHHHHH--
Confidence 9999873 222 3578999999877777654 44556999999998 32 2333 577777
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC-CC-------CC-C
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV-TQ-------PP-D 260 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g-~~-------~~-d 260 (508)
+++++. .+.+.++++++++||||.++|.+++.++++ +|+++|+++|+|++|+.. .. ++ +
T Consensus 168 ~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~---------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 235 (412)
T 1yaa_A 168 NAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVD---------AIASKNHIALFDTAYQGFATGDLDKDAYAVRL 235 (412)
T ss_dssp HHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHTTCEEEEEESCTTTSSSCHHHHTHHHHH
T ss_pred HHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCCEEEEecccccccCCcccchhHHHHH
Confidence 555321 123567777999999999999776655554 344599999999998532 11 11 2
Q ss_pred CCCCC----CcEEEEeccccccCCCc--ceEEE--E-----ech----hHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 261 LSKYP----VDFVVMSFYKIFGYPTG--LGALI--M-----RND----AAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 261 ~~~~~----~D~~~~S~~K~~g~P~G--~G~l~--~-----~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+...+ .++++.|+||.+| |+| +|+++ . +++ +++.+...
T Consensus 236 ~~~~~~~~~~~i~~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~------------------------ 290 (412)
T 1yaa_A 236 GVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI------------------------ 290 (412)
T ss_dssp HHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH------------------------
T ss_pred HHhcCCCCcceEEEeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH------------------------
Confidence 22122 4688999999999 878 69998 6 444 44333321
Q ss_pred ccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCc
Q 010538 324 ELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGS 398 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
.+...++++.....++.++++... +.++++++++++++++++.+.|+++.. ..+++++.+.. +.
T Consensus 291 ~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------~~ 359 (412)
T 1yaa_A 291 IRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGT---PGNWDHIVNQC--------GM 359 (412)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSCCTHHHHCC--------SS
T ss_pred HhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCeeeeccCc--------eE
Confidence 011123445555666666665431 124788899999999999999988620 00255544432 34
Q ss_pred eEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEe
Q 010538 399 MVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVS 478 (508)
Q Consensus 399 ~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis 478 (508)
++++.+ +...+.+.+.++||.+++ .+|||
T Consensus 360 ~~~~~~--------~~~~~~~~l~~~gi~v~~-------------------------------------------~~Ris 388 (412)
T 1yaa_A 360 FSFTGL--------TPQMVKRLEETHAVYLVA-------------------------------------------SGRAS 388 (412)
T ss_dssp EEECCC--------CHHHHHHHHHHHCEECCT-------------------------------------------TSEEE
T ss_pred EEeeCC--------CHHHHHHHHHhCCEEecc-------------------------------------------CcEEE
Confidence 444322 223476777788999753 37999
Q ss_pred cCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 479 FGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 479 ~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
++. .|.+++++++++|+++++++
T Consensus 389 ~~~-~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 389 IAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp GGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred Ecc-CCHhHHHHHHHHHHHHHHhh
Confidence 985 59999999999999988764
No 184
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.90 E-value=6e-23 Score=213.99 Aligned_cols=332 Identities=13% Similarity=-0.005 Sum_probs=207.9
Q ss_pred eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCC------CCCCceEEEcCChHHHH
Q 010538 43 YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNA------SMKDYKCIFTSGATAAL 116 (508)
Q Consensus 43 yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~~i~~t~g~t~al 116 (508)
|+|..+.+++++.+.+++.+.+... ....|.... ...++|+.++++++. +++..+|++|+|+|+|+
T Consensus 59 y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~----g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al 130 (420)
T 4f4e_A 59 YTNEDGKIPLLRAVRDAEKARVEAG----LPRGYLPID----GIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGAL 130 (420)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTC----CCCCCCCTT----CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred eECCCCCccCcHHHHHHHHHHhccC----CCCCCCCCC----CcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHH
Confidence 3344456666688888876544220 111122111 134566777776643 23201589999999999
Q ss_pred HHHH--hhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC--CccCccccccccccccccccchhhhhcCCCC
Q 010538 117 KLVG--EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE--EAVDNDGLSESLVTSTKISLLPIQRRKGASF 192 (508)
Q Consensus 117 ~~~~--~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~--~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l 192 (508)
.+++ .++ ..+|++|+++...|+++. ..++..|.+++.+|.. .+..+ |+++++ +++
T Consensus 131 ~~~~~~~~~-~~~gd~Vlv~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~---------------d~~~l~--~~l 189 (420)
T 4f4e_A 131 KIGADFLRT-LNPKAKVAISDPSWENHR---ALFDMAGFEVVAYPYYDAKTNGV---------------NFDGML--AAL 189 (420)
T ss_dssp HHHHHHHHH-HCTTCCEEEEESCCHHHH---HHHHHTTCCEEEEECEETTTTEE---------------CHHHHH--HHH
T ss_pred HHHHHHHHH-hCCCCEEEEeCCCcHhHH---HHHHHcCCeEEEeeeeccccCcc---------------CHHHHH--HHH
Confidence 9984 444 578899998886666654 4455579999999983 23333 577777 665
Q ss_pred CCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCC-----CC----CC
Q 010538 193 PERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPP-----DL----SK 263 (508)
Q Consensus 193 ~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~-----d~----~~ 263 (508)
++ ..++++++++++++||||.+++.+++.++++ +|+++|+++|+|++++...... .+ ..
T Consensus 190 ~~---~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~---------~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~ 257 (420)
T 4f4e_A 190 NG---YEPGTIVVLHACCHNPTGVDLNDAQWAQVVE---------VVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAA 257 (420)
T ss_dssp TT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHT
T ss_pred Hh---CCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCcEEEEccccccccCCcchhhHHHHHHHhc
Confidence 32 1367899999999999999999886666655 4555999999999986533221 11 12
Q ss_pred CCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 264 YPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
.+.++++.|++|.|| ++| +|++++ +++.++.+...... ..+....+++.....+
T Consensus 258 ~~~~i~~~S~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 316 (420)
T 4f4e_A 258 NLNVFVSSSFSKSFS-LYGERVGALSIITDSKDEAARVLSQLKR--------------------VIRTNYSNPPTHGGAI 316 (420)
T ss_dssp TCCEEEEEECTTTTT-CGGGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHH
T ss_pred CCCEEEEEeCCccCc-CcCCCcEEEEEEcCCHHHHHHHHHHHHH--------------------HHhcccCCCCHHHHHH
Confidence 356799999999999 768 899875 23433322111000 0001112233333333
Q ss_pred HHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccC
Q 010538 339 IRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFG 413 (508)
Q Consensus 339 l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 413 (508)
+..++.... +..++.++++++++++++.+.|+++.. .+++.+..+.. +.++++.+ +
T Consensus 317 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~--------g~~~~~~~--------~ 377 (420)
T 4f4e_A 317 VAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGI---ERDFSFINAQR--------GMFSYSGL--------T 377 (420)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---SSCCTHHHHSC--------SSEEECCC--------C
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCceeECCCc--------cEEEEeCC--------C
Confidence 333333210 123688889999999999999988621 01454444432 45555443 2
Q ss_pred HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHH
Q 010538 414 YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRC 493 (508)
Q Consensus 414 ~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~ 493 (508)
...+.+.+.++||.+.++ .|+|++.. |.++++++++
T Consensus 378 ~~~~~~~l~~~gI~v~~~-------------------------------------------~Ris~~~~-~~~~i~~~~~ 413 (420)
T 4f4e_A 378 SAQVDRLREEFGIYAVST-------------------------------------------GRICVAAL-NTRNLDVVAN 413 (420)
T ss_dssp HHHHHHHHHHHCEECCTT-------------------------------------------SEEEGGGC-CTTTHHHHHH
T ss_pred HHHHHHHHHhCCEEecCC-------------------------------------------CeEEEecC-CHHHHHHHHH
Confidence 234778888999998652 29999754 5566999999
Q ss_pred hhhhhh
Q 010538 494 SSFDFV 499 (508)
Q Consensus 494 ~~~~~~ 499 (508)
+|++++
T Consensus 414 ~l~~~l 419 (420)
T 4f4e_A 414 AIAAVL 419 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 185
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.89 E-value=1.2e-21 Score=204.94 Aligned_cols=335 Identities=10% Similarity=-0.022 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEccC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDVE 161 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~~ 161 (508)
....+++++++|+++|.+. .++++++++|+.+++.++ .++|++|+++...|+++..... .++..|++++.++.+
T Consensus 81 ~p~~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~al-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGALG----VLALGSGMAAISTAILTL-ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp CHHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred CHHHHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHH-hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 4567889999999999853 355556679999999988 7889999999999988776544 667789999999875
Q ss_pred CccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 162 EAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
|+++++ +++ +++|++|++++++||+|.+.|+++|.++|++
T Consensus 156 --------------------d~~~l~--~ai------~~~t~~v~~e~p~NptG~~~dl~~i~~la~~------------ 195 (430)
T 3ri6_A 156 --------------------DSLAVE--HAC------DETTKLLFLETISNPQLQVADLEALSKVVHA------------ 195 (430)
T ss_dssp --------------------CHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHT------------
T ss_pred --------------------CHHHHH--Hhh------CCCCeEEEEECCCCCCCeecCHHHHHHHHHH------------
Confidence 256667 444 4689999999999999999999999999998
Q ss_pred CCeEEEEeccccCCCCCCCCCCCCCcEEEEeccccccCCC-cceEEEE-echh-HhhhccccccCceEEecccchhhhhh
Q 010538 242 GRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFGYPT-GLGALIM-RNDA-AKLLKNTYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 242 ~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g~P~-G~G~l~~-~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|+++|+|++++.+.. .+....++|+++.|++|++++|. ++|.+++ +.+. ... ...+..-.. ......+...
T Consensus 196 ~g~~livD~a~~~~~~-~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~-~~~~~~l~~---~~g~~~~i~~ 270 (430)
T 3ri6_A 196 KGIPLVVDTTMTPPYL-LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS-LPSLAPYYA---KAGPMAFLYK 270 (430)
T ss_dssp TTCCEEEECTTSCTTT-CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGG-STTTHHHHH---HHGGGHHHHH
T ss_pred cCCEEEEECCCccccc-CChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhh-ccchhhhhh---hhchhhHHHH
Confidence 9999999999998765 44556689999999999999542 1444444 3221 100 000000000 0000000000
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcccC---
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVSYH--- 394 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~--- 394 (508)
......+...++.+....+.+...++. +..+.++..+.++++.+.|++.+ .++ +..|.-. ..+.
T Consensus 271 ~~~~~~~~~g~~~~~~~a~l~l~~l~~-----l~~r~~~~~~na~~la~~L~~~p------~v~~V~~P~l~-~~p~~~~ 338 (430)
T 3ri6_A 271 ARKEVFQNLGPSLSPHNAYLQSLGLET-----MALRIERSCQNAQELAHWLLSIP------QVKCVNHPSLP-DSPFYAI 338 (430)
T ss_dssp HHHTHHHHHCCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCT------TCEEEECTTST-TSTTHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHhCCC------CccEEECCCCC-CCccHHH
Confidence 000001112233333333322334443 34555677888889999998874 565 4434311 0000
Q ss_pred -----CCCc-eEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 395 -----DTGS-MVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 395 -----~~~~-~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
..++ +++|.+++. .....+.+.|+..++.++.|..++.-.. +.+.....+. .+...-.
T Consensus 339 ~~~~~g~Gg~~lsf~l~~~----~~~~~~~~~l~~~~~~~s~G~~~sli~~------p~~~~h~~~~------~~~~~~~ 402 (430)
T 3ri6_A 339 AKRQFRYAGSILTFELESK----EASYRFMDALKLIRRATNIHDNKSLILS------PYHVIYALNS------HEERLKL 402 (430)
T ss_dssp HHHHCSSCCSEEEEECSSH----HHHHHHHHHCSSSEECSCCSCSSCEEEC------TGGGC---------------CGG
T ss_pred HHHhCCCCceEEEEEECCH----HHHHHHHHhCCcceecCCCCCCCceeeC------CcccccccCC------HHHHHhc
Confidence 0155 999999732 1123455556556677777765542100 0000001010 0000011
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSS 495 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~ 495 (508)
+..++.||+|++.-+.++-++.+.++|
T Consensus 403 g~~~~liRlsvG~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 403 EISPAMMRLSVGIEEIEDLKEDILQAL 429 (430)
T ss_dssp GSCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence 234789999999866555555554443
No 186
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.89 E-value=1.6e-23 Score=220.98 Aligned_cols=363 Identities=13% Similarity=0.028 Sum_probs=212.5
Q ss_pred CCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHH
Q 010538 39 NGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKL 118 (508)
Q Consensus 39 ~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~ 118 (508)
.+..|+|+.+..++ +.+.+++.+.+.. + ...|.. .....+++++++++++. + +++||+|+|+|+++
T Consensus 39 ~~~~ylD~~~~~~~-~~v~~a~~~~l~~---~--~~~y~~----~~~~~~l~~~la~~~~~--~--~v~~t~~gt~A~~~ 104 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-GAVTQSMQAAMMR---G--DEAYSG----SRSYYALAESVKNIFGY--Q--YTIPTHQGRGAEQI 104 (467)
T ss_dssp GGGCSEECSCCSSC-SCCCHHHHHHTTS---C--CCCSSS----CHHHHHHHHHHHHHHCC--S--EEEEEC--CCSHHH
T ss_pred CCCeeEecccCCCc-HHHHHHHHHHhcc---C--cceecc----CchhHHHHHHHHHHhCc--C--cEEEcCCcHHHHHH
Confidence 56789999877765 6677776554321 1 111211 22356788999999987 4 79999999999999
Q ss_pred HHhhcCCCC-----C----CeEEEecccc-cchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 119 VGEAFPWSH-----Q----SSYMYTMENH-NSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 119 ~~~~l~~~~-----g----~~vl~~~~~h-~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
++.++ ..+ | ++|++.. .| +++.... ...|..+...+.......+. .....-..|+++++
T Consensus 105 al~~~-~~~~~~~~G~~~~d~Ii~~~-~h~~t~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~Le- 173 (467)
T 2oqx_A 105 YIPVL-IKKREQEKGLDRSKMVAFSN-YFFDTTQGHS---QINGCTVRNVYIKEAFDTGV-----RYDFKGNFDLEGLE- 173 (467)
T ss_dssp HHHHH-HHHHHHHHCCCTTTCEEEES-SCCHHHHHHH---HHTTCEEEECBCTTTTCTTS-----CCTTTTCBCHHHHH-
T ss_pred HHHHH-hccccccCCCCccceEEecc-cccccchhhh---hccCcceeeccccccccCCC-----CCCccCCcCHHHHH-
Confidence 99887 344 6 7777764 44 3333332 23466655432110000000 00000112678888
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHH---HHHHHHcCCccccccCCCCCCCeEEEEeccccC----------
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFS-GSRFNLD---LINIMKKNPERILEISPFSKGRWMVLIDAAKGC---------- 254 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~---~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---------- 254 (508)
+++.+.. .++|++|++++++|++ |.++|.+ +|.++|++ ||+++|+|++|+.
T Consensus 174 -~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~------------~gi~li~D~a~~~e~~~~~~~~~ 238 (467)
T 2oqx_A 174 -RGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK------------YDIPVVMDSARFAENAYFIKQRE 238 (467)
T ss_dssp -HHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH------------TTCCEEEECTTHHHHHHHHHHHC
T ss_pred -HHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH------------cCCEEEEEchhhhhhhhhccccc
Confidence 5553110 1478999999999998 8888765 55555555 9999999988765
Q ss_pred -CCCCCCCCC------CCCcEEEEeccccccCCCcceEEEEech-hHh---hhcccc-ccCceEEecccchhhhhhccCc
Q 010538 255 -VTQPPDLSK------YPVDFVVMSFYKIFGYPTGLGALIMRND-AAK---LLKNTY-FSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 255 -g~~~~d~~~------~~~D~~~~S~~K~~g~P~G~G~l~~~~~-~~~---~l~~~~-~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
+....+... ..+|++++|+||++|.|.| |+++.+++ +++ .+++.. .+++.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 300 (467)
T 2oqx_A 239 AEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF----------------- 300 (467)
T ss_dssp GGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS-----------------
T ss_pred ccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc-----------------
Confidence 333333322 2378889999999985645 77777766 333 333321 11110
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...++.+...++++..+++.. . -+...++..++++++.+.|+++ ++.+. +.. +.++++
T Consensus 301 ---~~~~~~~~~~~~al~~~l~~~--~-~~~~~~~~~~~~~~l~~~L~~~-------~~~~~-~~~--------~~~~~~ 358 (467)
T 2oqx_A 301 ---PTYGGLEGGAMERLAVGLYDG--M-NLDWLAYRIAQVQYLVDGLEEI-------GVVCQ-QAG--------GHAAFV 358 (467)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHHHHHHHHT-------TCCEE-EEC--------SSCEEE
T ss_pred ---ccccchhhhHHHHHHHhhHhh--h-hHHHHHHHHHHHHHHHHHHHHC-------CCeee-cCC--------ceEEEE
Confidence 112344444444443332211 1 1234455678889999999876 35555 432 678888
Q ss_pred EeeC----CCCCccCHHHHHHHH-hhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 403 NLKR----PDGSWFGYREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 403 ~~~~----~~~~~~~~~~l~~~L-~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
.+.. .+...++...+.+.| .++||.+.++..|..+. .++. |. ......+.+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~-------~~~~-----g~----------~~~~~~~~iRl 416 (467)
T 2oqx_A 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGR-------DPKT-----GK----------QLPCPAELLRL 416 (467)
T ss_dssp EHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB-------CTTT-----CS----------BCCCSCCEEEE
T ss_pred echhhcccCCcccccHHHHHHHHHHhcCceecccccccccc-------cccc-----cc----------cccCccCeEEE
Confidence 8742 222222123457777 88999998743221110 0000 00 00011478999
Q ss_pred ecCCC-CCHHHHHHHHHhhhhhhhhhh
Q 010538 478 SFGYM-STFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 478 s~~~~-~t~eev~~l~~~~~~~~~~~~ 503 (508)
+++.. +|.+|++++++.|+++++.++
T Consensus 417 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 417 TIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred EecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999 999999999999998876554
No 187
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.89 E-value=1.2e-22 Score=213.86 Aligned_cols=334 Identities=13% Similarity=0.033 Sum_probs=210.8
Q ss_pred eeeeCCCCCCCCHHHHHHHHHHhhc-cccCCCCCccchhhhhhHHHHHHHHHHHHHc-CCC-----CCCceEEE--cCCh
Q 010538 42 VYLDHAGATLYSELQMEAIFRDFTT-NVYGNPHSQSDISLATCDIVRAAREQVLDYF-NAS-----MKDYKCIF--TSGA 112 (508)
Q Consensus 42 iyld~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~~~-----~~~~~i~~--t~g~ 112 (508)
+|+|+.+.+++.+.+.+++.+ +.. ....+.......+ ..++|+.+++++ |.+ ++ +|++ |+|+
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~-~~~~~~~~~~~Y~~~~G------~~~lr~~ia~~l~g~~~~~~~~~--~i~~~~t~gg 128 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAI-ISSDLSKYNKEYPPVAG------FPLFLEAAQFLMFGKDSKAAQEG--RIASCQSLSG 128 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHH-HHHCTTTTCCSCCCTTC------CHHHHHHHHHHHHCTTCHHHHTT--CEEEEEESHH
T ss_pred cccCCCCCEechHHHHHHHHH-HhhcccCCCCCCCCCcc------hHHHHHHHHHHhcCCCccccCcC--cEEEEECCcH
Confidence 467877778878877776432 321 1111111111112 466788888887 876 56 8999 9999
Q ss_pred HHHHHHH--HhhcCCCCCCeEEEecccccchHHHHH-HHHhcCCeEEEEcc-CCc--cCccccccccccccccccchhhh
Q 010538 113 TAALKLV--GEAFPWSHQSSYMYTMENHNSVLGIRE-YALSQGAAAFAIDV-EEA--VDNDGLSESLVTSTKISLLPIQR 186 (508)
Q Consensus 113 t~al~~~--~~~l~~~~g~~vl~~~~~h~s~~~~~~-~~~~~G~~v~~v~~-~~~--~~~~~l~~~~~~~~~~~~d~~~l 186 (508)
|+|++++ +.++ ..+|++|+++...|+++....+ +++..|.+++.+|. +.+ ..+ |++++
T Consensus 129 t~al~l~~~~~~~-~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~---------------d~e~l 192 (448)
T 3meb_A 129 TGSLHIGFEFLHL-WMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEI---------------DFSNT 192 (448)
T ss_dssp HHHHHHHHHHHHH-HCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSB---------------CHHHH
T ss_pred HHHHHHHHHHHHH-hCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCc---------------CHHHH
Confidence 9999884 4444 4688999999988877765544 12257999999998 443 344 67788
Q ss_pred hcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-CCCCCC-----
Q 010538 187 RKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-VTQPPD----- 260 (508)
Q Consensus 187 ~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-g~~~~d----- 260 (508)
+ +++++ ..++++++++++++||||.++|.+++.++++ +|+++|+++++|+++.. +..+.+
T Consensus 193 ~--~~l~~---~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~---------l~~~~~~~li~Deay~~~~~~~~~~~~~~ 258 (448)
T 3meb_A 193 K--KDIQS---APEKSIFLFHACAHNPSGIDFTEAQWKELLP---------IMKEKKHIAFFDSAYQGFATGSFEADAFA 258 (448)
T ss_dssp H--HHHHH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred H--HHHHh---CCCCcEEEEeCCCCCCCCcCCCHHHHHHHHH---------HHHHCCCEEEEecccccccCCCcccCchh
Confidence 7 55532 1246789999999999999999887555544 34459999999999763 322211
Q ss_pred C----CCCCCcEEEEeccccccCCCc--ceEE--EE--------ec-----hhHhhhccccccCceEEecccchhhhhhc
Q 010538 261 L----SKYPVDFVVMSFYKIFGYPTG--LGAL--IM--------RN-----DAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 261 ~----~~~~~D~~~~S~~K~~g~P~G--~G~l--~~--------~~-----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+ ......+++.|+||.|| ++| +|++ ++ ++ ++++.+...
T Consensus 259 ~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~-------------------- 317 (448)
T 3meb_A 259 VRMFVDAGVEVLVAQSFSKNFG-LYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ-------------------- 317 (448)
T ss_dssp HHHHHHTTCCEEEEEECTTTSC-CGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHhhcCCcEEEEecccccCC-CccccceeeeeeeccccccccCCHHHHHHHHHHHHHH--------------------
Confidence 1 11123477999999999 667 7998 55 33 233222211
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHHHhcccCCCCCce------EEEecCCC
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKVLLSLRHENGADV------CTIYGTYT 388 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~------~~~~~~~~ 388 (508)
.+....+++.....++..++.... ...++.+++++.++++++.+.|+++. .++ +....+..
T Consensus 318 ----~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~~~~~~~~~ 389 (448)
T 3meb_A 318 ----IRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK----TPGPGSKGTWDHILTAI 389 (448)
T ss_dssp ----HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCSTTTCCCTHHHHCC
T ss_pred ----HhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCcCcccccceeCCCc
Confidence 111122344444444444433110 01267888999999999999998761 122 33333322
Q ss_pred CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccC
Q 010538 389 SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIH 468 (508)
Q Consensus 389 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 468 (508)
+.+++..++ ...+..+++++||.+.+|.
T Consensus 390 --------g~~~~~~~~--------~~~~~~ll~~~gV~v~~G~------------------------------------ 417 (448)
T 3meb_A 390 --------GMFTFTGLT--------PEHVDYLKEKWSIYLVKAG------------------------------------ 417 (448)
T ss_dssp --------SSEEECCCC--------HHHHHHHHHHHCEEECSGG------------------------------------
T ss_pred --------eEEEecCCC--------HHHHHHHHHhCCEEEeCCC------------------------------------
Confidence 444443332 2235566688899997752
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 469 GKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 469 ~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.|||++..+ .++|++++++|+++++-+
T Consensus 418 ------gRis~a~~~-~~~i~~~~~~l~~~l~~~ 444 (448)
T 3meb_A 418 ------GRMSMCGLT-ESNCDYVAEAIHDAVTKL 444 (448)
T ss_dssp ------GEEEGGGCC-TTTHHHHHHHHHHHHHHS
T ss_pred ------cEEEEecCC-HHHHHHHHHHHHHHHHhc
Confidence 299997554 455999999999888743
No 188
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.89 E-value=4e-21 Score=198.26 Aligned_cols=328 Identities=11% Similarity=0.067 Sum_probs=216.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++ +..+|.+++++.+... .... ....+ .....++++++++++++ ++ +++||+|+
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~-~~~~~-----~~~~~~~l~~~la~~~~--~~--~v~~~~gg 102 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-KLLH-TSNLY-----YNENIAAAAKNLAKASA--LE--RVFFTNSG 102 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-TCSC-CCTTS-----BCHHHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-hccc-ccccc-----CCHHHHHHHHHHHHhcC--CC--eEEEeCCH
Confidence 56779998665 2247888888766543 2111 11111 24567788899999998 45 89999999
Q ss_pred HHHHHHHHhhcCC------CCCCeEEEecccccchH-HHHHHH---------HhcCCeEEEEccCCccCccccccccccc
Q 010538 113 TAALKLVGEAFPW------SHQSSYMYTMENHNSVL-GIREYA---------LSQGAAAFAIDVEEAVDNDGLSESLVTS 176 (508)
Q Consensus 113 t~al~~~~~~l~~------~~g~~vl~~~~~h~s~~-~~~~~~---------~~~G~~v~~v~~~~~~~~~~l~~~~~~~ 176 (508)
++|+.+++.++.. .+++.|++....|.+.. ...... ...+..+..+|.+
T Consensus 103 ~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 167 (395)
T 3nx3_A 103 TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN--------------- 167 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT---------------
T ss_pred HHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC---------------
Confidence 9999998877631 34677877766654433 222110 0112334444432
Q ss_pred cccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 177 TKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 177 ~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
|+++++ +++ .+++++|++..++|++|.+.+ +++|.++|++ +|+++|+|++|
T Consensus 168 -----d~~~l~--~~l------~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~Dev~ 222 (395)
T 3nx3_A 168 -----DISSVE--KLV------NEKTCAIILESVQGEGGINPANKDFYKALRKLCDE------------KDILLIADEIQ 222 (395)
T ss_dssp -----CHHHHH--TTC------CTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHH------------HTCEEEEECTT
T ss_pred -----CHHHHH--Hhc------cCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEEecc
Confidence 477888 555 467899999999999999988 8888888887 99999999998
Q ss_pred c-CCCCC--C--CCCCCCCcEEEEeccccccCCCcceEEEEechh-HhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 253 G-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDA-AKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 253 ~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
+ +|... . +......|+++ ++|.++++.++|+++++++. .+.+.+...+..
T Consensus 223 ~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~---------------------- 278 (395)
T 3nx3_A 223 CGMGRSGKFFAYEHAQILPDIMT--SAKALGCGLSVGAFVINQKVASNSLEAGDHGST---------------------- 278 (395)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEEE--ECGGGTTTSCCEEEEECHHHHHHHSCTTCCSSC----------------------
T ss_pred cCCCcCCcchhHHhcCCCCCEEE--ecccccCCCceEEEEEchhhhhhhcCCcccCCC----------------------
Confidence 7 44322 1 11122456665 45988743358999999998 776665422211
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
.+.|....++..++++.+.+ +.+.++.+++.+++++.|.++.. ..+.+....+ .+.++++.+++
T Consensus 279 --~~~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~---------~g~~~~~~~~~ 342 (395)
T 3nx3_A 279 --YGGNPLVCAGVNAVFEIFKE---EKILENVNKLTPYLEQSLDELIN--EFDFCKKRKG---------LGFMQGLSLDK 342 (395)
T ss_dssp --BSCCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEECT
T ss_pred --CCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEe---------EEEEEEEEeCC
Confidence 12355566666677776644 34556666666666666654310 0022333221 16888888865
Q ss_pred CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 407 PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
.. +...+.+.|.++||.++++. .+++|+++++..|.+
T Consensus 343 ~~----~~~~~~~~l~~~Gi~v~~~~---------------------------------------~~~iRi~~~~~~t~e 379 (395)
T 3nx3_A 343 SV----KVAKVIQKCQENALLLISCG---------------------------------------ENDLRFLPPLILQKE 379 (395)
T ss_dssp TS----CHHHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHH
T ss_pred cc----hHHHHHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHH
Confidence 31 23468888999999988742 578999999999999
Q ss_pred HHHHHHHhhhhhhh
Q 010538 487 DAKVNRCSSFDFVN 500 (508)
Q Consensus 487 ev~~l~~~~~~~~~ 500 (508)
|+++++++|+++++
T Consensus 380 ~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 380 HIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 189
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.89 E-value=1e-22 Score=207.06 Aligned_cols=294 Identities=9% Similarity=0.013 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCC--eEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 85 IVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQS--SYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 85 ~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~--~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...++++++++++|.+. .++++|+++|+.+++.++. .+|+ +|++++..|++...........|++++.+|.+
T Consensus 48 ~~~~l~~~la~~~~~~~----~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~- 121 (357)
T 3lws_A 48 IIEPFEQKFADVLGMDD----AVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAA- 121 (357)
T ss_dssp THHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCT-
T ss_pred HHHHHHHHHHHHhCCCc----EEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhccCcEEEEecCC-
Confidence 46778999999999853 3555778889999888873 4455 78888777766544322334468999888853
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCC-ccccCHHHHHHHHcCCccccccCCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFS-GSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~t-G~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
++.+ |+++++ ++ +++++|++++++||| |.++|.+++.++++ +|++
T Consensus 122 ~~~~---------------d~~~l~--~~--------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~---------~~~~ 167 (357)
T 3lws_A 122 DRLM---------------TLDEIK--AL--------PDIACLLLELPQREIGGVAPAFSELETISR---------YCRE 167 (357)
T ss_dssp TSCC---------------CHHHHH--TC--------CSCSEEEEESSBGGGTSBCCCHHHHHHHHH---------HHHH
T ss_pred CCCc---------------CHHHHh--cC--------cCcceEEEEcccccCCceeCCHHHHHHHHH---------HHHH
Confidence 3344 688898 33 237999999999998 99998554444443 3334
Q ss_pred CCeEEEEeccccC------CCCCCCCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhcccc--ccCceEEecccch
Q 010538 242 GRWMVLIDAAKGC------VTQPPDLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTY--FSGGTVAASIADI 313 (508)
Q Consensus 242 ~g~~vivD~a~~~------g~~~~d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~ 313 (508)
+|++||+|++|.. +....++. ...|+++.|+||++++|.| |+++.++++++.+.... .++.
T Consensus 168 ~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~--------- 236 (357)
T 3lws_A 168 RGIRLHLDGARLFEMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYGGD--------- 236 (357)
T ss_dssp TTCEEEEEETTHHHHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC---------
T ss_pred cCCEEEEECchhhhhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhcCC---------
Confidence 9999999998761 22111111 2478899999999966988 99999988877665321 1100
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEe-cCCCCCcc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIY-GTYTSEVS 392 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~-~~~~~~~~ 392 (508)
..+.+....+++ .+++.+ .+. .++..+.++++.+.|+++ +++++. .++.
T Consensus 237 --------------~~~~~~~~~~~~-~~l~~~----~~~-~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~---- 286 (357)
T 3lws_A 237 --------------LISLYPYIVSAD-YYYELR----KDR-MGQYYEQAKQLAEQFNAL------PGVHTTPEVPV---- 286 (357)
T ss_dssp --------------CSCCHHHHHHHH-HHHHHH----TTC-HHHHHHHHHHHHHHHHTS------TTEEEESSSCS----
T ss_pred --------------cccchHHHHHHH-HHHHHH----HHH-HHHHHHHHHHHHHHHHhC------CCCeeccCCCc----
Confidence 011122222222 344432 122 234577788999999987 478874 3333
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
+++++++++.... .+..++.+.|.++||.+++|..+.+ ..
T Consensus 287 ----~~~~~~~~~~~~~--~~~~~~~~~l~~~Gi~v~~g~~~~~----------------------------------~~ 326 (357)
T 3lws_A 287 ----SNMFHLHFDGQAA--DISPKLEQVQEETGLGFVGYLVDKD----------------------------------GY 326 (357)
T ss_dssp ----SSEEEEEEESCHH--HHHHHHHHHHHHHCEESCSCCEECS----------------------------------SE
T ss_pred ----ceEEEEEecCChH--HHHHHHHHHHHhcCeEEecccccCC----------------------------------Cc
Confidence 7899999875310 1124578889999999998843221 14
Q ss_pred ceEEEecCCC---CCHHHHHHHHHhhhhhh
Q 010538 473 GAIRVSFGYM---STFEDAKVNRCSSFDFV 499 (508)
Q Consensus 473 ~~iRis~~~~---~t~eev~~l~~~~~~~~ 499 (508)
+.+|++++.. .+.++++..++.|.+.+
T Consensus 327 ~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 327 CSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 6899998844 58888888888876543
No 190
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.89 E-value=9.3e-21 Score=197.68 Aligned_cols=328 Identities=13% Similarity=0.064 Sum_probs=214.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+.. ... ......+ .....+++++++++++| .+ +|+||+|+
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~-~~~-~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~gg 123 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQG-ETL-WHTSNVF-----TNEPALRLGRKLIDATF--AE--RVLFMNSG 123 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHH-TTC-CCCCTTS-----CCHHHHHHHHHHHHHSS--CS--EEEEESSH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHH-Hhc-ccccCcc-----CCHHHHHHHHHHHhhCC--CC--eEEEeCCH
Confidence 56789998543 445788888876654 322 1211111 23567788999999997 35 79999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEeccccc-chHHHHHHHHhcCCe------------EEEEccCCccCccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHN-SVLGIREYALSQGAA------------AFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~------------v~~v~~~~~~~~~~l~~~ 172 (508)
++|+.+++.++.. .+++.||+....|+ ....+... .|.+ +..+|.+
T Consensus 124 teA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~---~g~~~~~~~~~p~~~~~~~~~~~----------- 189 (420)
T 2pb2_A 124 TEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSV---GGQPKYSDGFGPKPADIIHVPFN----------- 189 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHH---SSCHHHHTTSSSCCSCEEEECTT-----------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHh---cCCccccccCCCCCCCeEEecCC-----------
Confidence 9999999988732 23357777765554 44444332 2222 4444431
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcc-ccC---HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGS-RFN---LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~-~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
|+++++ +++ ++++++|++++++|++|. .+| +++|.++|++ +|+++|+
T Consensus 190 ---------d~~~le--~~i------~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~------------~gi~lI~ 240 (420)
T 2pb2_A 190 ---------DLHAVK--AVM------DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE------------HQALLVF 240 (420)
T ss_dssp ---------CHHHHH--HHC------CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH------------TTCEEEE
T ss_pred ---------CHHHHH--HHh------ccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 467777 554 357899999999888885 344 5566666665 9999999
Q ss_pred ecccc-CCCCC--C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 249 DAAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 249 D~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
|++|+ ++... + +......|++ |++|++++...+|++++++++++.+.+...+.
T Consensus 241 Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~~-------------------- 298 (420)
T 2pb2_A 241 DEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHGS-------------------- 298 (420)
T ss_dssp ECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECHHHHTTCC----CC--------------------
T ss_pred EcCCcCcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEEEEhHHHHHhhcCCCcCc--------------------
Confidence 99996 22211 1 1122346877 56799882223899999988766554321100
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
..+.|....++..++++.+.+ +.+.++++++++++.+.|+++.. +.+.+....+ .+.++++.
T Consensus 299 ----t~~~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~---------~g~~~~v~ 360 (420)
T 2pb2_A 299 ----TYGGNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDE--QFDIFSDIRG---------MGLLIGAE 360 (420)
T ss_dssp ----EECCCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEE---------ETTEEEEE
T ss_pred ----ccCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEe---------cceEEEEE
Confidence 013455566666777887644 57888999999999999977510 0012322211 16888888
Q ss_pred eeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 404 LKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 404 ~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
++.... .+..++.+.|.++||.++++. ++.+|+++++.+
T Consensus 361 ~~~~~~--~~~~~l~~~l~~~Gi~v~~~~---------------------------------------~~~iRl~~~~~~ 399 (420)
T 2pb2_A 361 LKPKYK--GRARDFLYAGAEAGVMVLNAG---------------------------------------ADVMRFAPSLVV 399 (420)
T ss_dssp ECGGGT--TCHHHHHHHHHHTTEECEESS---------------------------------------TTEEEECCCTTC
T ss_pred ECCCch--HHHHHHHHHHHHCCCEEEeCC---------------------------------------CCEEEEECCCCC
Confidence 864210 124568888888999988742 468999999999
Q ss_pred CHHHHHHHHHhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~ 501 (508)
|.+|++++++.|+++++.
T Consensus 400 t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 400 EEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987754
No 191
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.89 E-value=9.3e-22 Score=206.98 Aligned_cols=359 Identities=13% Similarity=0.066 Sum_probs=215.1
Q ss_pred CCCeeeeCCCC---CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHH
Q 010538 39 NGTVYLDHAGA---TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAA 115 (508)
Q Consensus 39 ~~~iyld~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~a 115 (508)
.+..|+|+.+. .++++.+.+++.. ....+. ......++++.++++++.+ ++++|+|+|+|
T Consensus 40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~---------~~~~y~----~~~~~~~l~~~la~~~~~~----~~~~~~~gt~a 102 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAMSDKQWAGMMM---------GDEAYA----GSENFYHLERTVQELFGFK----HIVPTHQGRGA 102 (456)
T ss_dssp GGGCSEECSCSSSCCCCCHHHHHHHTT---------CCCCSS----SCHHHHHHHHHHHHHHCCS----EEEEESSHHHH
T ss_pred cccceeeeccccCCccCCHHHHHHhhc---------chhhcc----cChhHHHHHHHHHHHhCCC----cEEEeCCcHHH
Confidence 56778998653 2556766665421 011121 1234677899999999874 68999999999
Q ss_pred HHHHHhhcCCCCCCeEEEecccc-cchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCC
Q 010538 116 LKLVGEAFPWSHQSSYMYTMENH-NSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPE 194 (508)
Q Consensus 116 l~~~~~~l~~~~g~~vl~~~~~h-~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~ 194 (508)
+.+++.++ ..+|+ +++...| +++... +...|++++.++++.+...+.. .......|+++++ +++.+
T Consensus 103 ~~~al~~l-~~~gd--i~~~~~~~~~~~~~---~~~~G~~~~~v~~~~~~~~~~~-----~~~~~~~d~~~l~--~~i~~ 169 (456)
T 2ez2_A 103 ENLLSQLA-IKPGQ--YVAGNMYFTTTRYH---QEKNGAVFVDIVRDEAHDAGLN-----IAFKGDIDLKKLQ--KLIDE 169 (456)
T ss_dssp HHHHHHHH-CCTTC--EEEESSCCHHHHHH---HHHTTCEEEECBCGGGGCTTCC-----CSCTTCBCHHHHH--HHHHH
T ss_pred HHHHHHHh-CCCCC--EeccccccchhHHH---HHHcCCEEEEeccccccccccc-----ccccCCCCHHHHH--HHHHh
Confidence 99999998 67788 4455555 665443 4456999999988632000000 0000012678887 55521
Q ss_pred CCCCCCCceEEEEeCCCC-CCccccC---HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCC---------CCCCCC
Q 010538 195 RDPAGDAYNLFAFPSECN-FSGSRFN---LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCV---------TQPPDL 261 (508)
Q Consensus 195 ~~~~~~~t~lv~~~~~~n-~tG~~~~---i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g---------~~~~d~ 261 (508)
+ ..+.+++|++++++| +||.++| +++|.++|++ +|+++|+|++|+.| ......
T Consensus 170 ~--t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~------------~~i~li~De~~~~g~~~~~~~~~~~~~g~ 235 (456)
T 2ez2_A 170 K--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEA------------HGIKVFYDATRCVENAYFIKEQEQGFENK 235 (456)
T ss_dssp H--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH------------TTCCEEEECTTHHHHHHHHHHHSTTCTTS
T ss_pred c--cccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHH------------cCCeEEEEccccccccccccccccccCCc
Confidence 1 002348999998888 9999998 6677777776 99999999999874 211111
Q ss_pred C--------CCCCcEEEEeccccccCCCcceEEEE-echhHhhhcccccc-CceEEecccchhhhhhccCccccccCCCC
Q 010538 262 S--------KYPVDFVVMSFYKIFGYPTGLGALIM-RNDAAKLLKNTYFS-GGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 262 ~--------~~~~D~~~~S~~K~~g~P~G~G~l~~-~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
. ....|++++|+||+++ ++..|+++. ++++++.+...... .+. ...++.
T Consensus 236 ~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~ 294 (456)
T 2ez2_A 236 SIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFLCMNDDEMFSSAKELVVVYEGM--------------------PSYGGL 294 (456)
T ss_dssp CHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEEEESCHHHHHHHHHHHHHHTCC--------------------TTTTTC
T ss_pred chhhhhhhhcccCCEEEEeCcccCC-CCceeEEEECCHHHHHHHHHHHhhccCc--------------------ccccCc
Confidence 1 1236888889999877 433588888 56676655432110 000 001122
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee----CC
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK----RP 407 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~ 407 (508)
+...+.++ ++..+.... +...++..++.+++.+.|++. ++++..|.. ++++++.+. +.
T Consensus 295 ~~~~~~a~--a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~~--------~~~~~~~~~~~~~~~ 356 (456)
T 2ez2_A 295 AGRDMEAM--AIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA-------GVPIVEPVG--------GHAVFLDARRFCEHL 356 (456)
T ss_dssp CHHHHHHH--HHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC--------SSEEEEEHHHHTTTS
T ss_pred chhHHHHH--HHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC-------CCccccCCC--------ceEEEEEhHHhcCCC
Confidence 32233331 222222222 466777788889999999875 455555432 678888763 22
Q ss_pred CCCccCHHHHHHHH-hhCCCeecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC-CC
Q 010538 408 DGSWFGYREVEKLA-SLSGIQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM-ST 484 (508)
Q Consensus 408 ~~~~~~~~~l~~~L-~~~gI~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~-~t 484 (508)
+...+....+.+.| .++||.+.+ |..|.+.. +.+| . ......+.+|+|++.+ +|
T Consensus 357 ~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~--~~~g-----------~----------~~~~~~~~iRis~~~~~~t 413 (456)
T 2ez2_A 357 TQDEFPAQSLAASIYVETGVRSMERGIISAGRN--NVTG-----------E----------HHRPKLETVRLTIPRRVYT 413 (456)
T ss_dssp CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBC--TTTC-----------S----------BCCCSCCEEEEECCTTTCC
T ss_pred ChhhccHHHHHHHHHHhcCeeeecccccccccC--cccc-----------c----------cccCCCCeEEEEeCCCCCC
Confidence 22222112235555 788998644 44331100 0000 0 0001136899999987 89
Q ss_pred HHHHHHHHHhhhhhhhhhh
Q 010538 485 FEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 485 ~eev~~l~~~~~~~~~~~~ 503 (508)
.+|++++++.|+++++-..
T Consensus 414 ~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 414 YAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp HHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999999876543
No 192
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.88 E-value=2.3e-21 Score=208.95 Aligned_cols=311 Identities=15% Similarity=0.095 Sum_probs=194.2
Q ss_pred eEEEcCChHHHHHHHHhhc----CCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCccccccccccccccc
Q 010538 105 KCIFTSGATAALKLVGEAF----PWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 105 ~i~~t~g~t~al~~~~~~l----~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
+|++|+|+++++.+++.++ ...+|+.|+++...|+.+..... +...|++++.+|.+.++.+ .
T Consensus 167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~-~~~~g~~~~~v~~~~~~~~-------------~ 232 (546)
T 2zy4_A 167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPE-LAQYALEEVAINADPSLNW-------------Q 232 (546)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHH-STTSCCEEEEEECBGGGTT-------------B
T ss_pred eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHH-HcCCCcEEEEEecCcccCC-------------C
Confidence 8999999999999998873 25789999999877777665433 2235789999988754432 1
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC--CCCCeEEEEeccccCCCC-
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF--SKGRWMVLIDAAKGCVTQ- 257 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~--~~~g~~vivD~a~~~g~~- 257 (508)
.|+++++ +++ .+++++|++++++||||.++|.+++.++++ +| +++|++||+|++++....
T Consensus 233 ~d~~~l~--~~~------~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~---------~a~~~~~~~~ii~De~y~~~~~~ 295 (546)
T 2zy4_A 233 YPDSELD--KLK------DPAIKIFFCVNPSNPPSVKMDQRSLERVRN---------IVAEHRPDLMILTDDVYGTFADD 295 (546)
T ss_dssp CCHHHHG--GGG------STTEEEEEEESSCSSSCBCCCHHHHHHHHH---------HHHHTCTTCEEEEECTTGGGSTT
T ss_pred CCHHHHH--Hhh------CCCCeEEEEECCCCCCCccCCHHHHHHHHH---------HHHhccCCcEEEEeCcchhhccc
Confidence 2678888 443 467899999999999999999887766655 44 459999999999985332
Q ss_pred CCCCCCC--CCcEEEEeccccccCCCc--ceEEEEech-hHhhhcccc------------ccCceEEecccchhhhhhcc
Q 010538 258 PPDLSKY--PVDFVVMSFYKIFGYPTG--LGALIMRND-AAKLLKNTY------------FSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 258 ~~d~~~~--~~D~~~~S~~K~~g~P~G--~G~l~~~~~-~~~~l~~~~------------~g~~~~~~~~~~~~~~~~~~ 320 (508)
+.++... +.++++.|++|++| .+| +|+++++++ +++.+.... ..+.. .+....|.....
T Consensus 296 ~~s~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~---~p~~~~~~~~~~ 371 (546)
T 2zy4_A 296 FQSLFAICPENTLLVYSFSKYFG-ATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLP---DVRSLKFIDRLV 371 (546)
T ss_dssp CCCHHHHCGGGEEEEEESTTTTT-CGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCS---CGGGCCHHHHHH
T ss_pred CcCHHHhCCCCEEEEEeCccccC-CCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccc---cccchhhhhhhh
Confidence 2222211 46799999999998 558 799999886 665542110 00000 000000000000
Q ss_pred Cc---cccccCCCCChhHHHHHH--HHHHHHHh--cChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCccc
Q 010538 321 GV---EELFEDGTASFLSIASIR--HGFNLINS--LTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 321 ~~---~~~~~~gt~~~~~~~~l~--~al~~~~~--~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 393 (508)
.. .......+.+.+...++. +...++.+ ...+.+++.+++.++++.+.|. . ++....+.
T Consensus 372 ~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-------~~~~~~~~------ 437 (546)
T 2zy4_A 372 ADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-------PPLRDENA------ 437 (546)
T ss_dssp HHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-------SCCCCTTB------
T ss_pred hhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-------CcccCCCC------
Confidence 00 000111233333333321 12233332 2245666777777777777664 3 23222222
Q ss_pred CCCCceEEEEeeCC----CCC--------cc-CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 394 HDTGSMVSFNLKRP----DGS--------WF-GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 394 ~~~~~~v~~~~~~~----~~~--------~~-~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
.+.+++++++.. .+. .. +...+.+.+.++||.+.+|..|..
T Consensus 438 --~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~------------------------ 491 (546)
T 2zy4_A 438 --VDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS------------------------ 491 (546)
T ss_dssp --CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC------------------------
T ss_pred --eeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC------------------------
Confidence 266778887531 000 00 113367788899999999986643
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++++|||++ ..++++++++++.|+++++.
T Consensus 492 ----------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 492 ----------NRPSGRASLA-NLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp ----------SSCEEEEESS-SSCHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEec-cCCHHHHHHHHHHHHHHHHH
Confidence 1578999998 45899999999999987654
No 193
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.88 E-value=2.8e-20 Score=194.91 Aligned_cols=330 Identities=11% Similarity=0.049 Sum_probs=212.6
Q ss_pred CCCeeeeCCC---C---CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG---A---TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~---~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ . +..+|.+++++.+.. ... ......+ ......++++.++++++ .+ +|+|++|+
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~-~~~-~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~sG 131 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQA-KNL-TICSRAF-----FSVPLGICERYLTNLLG--YD--KVLMMNTG 131 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHH-TTC-SCCCTTS-----EEHHHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHH-HhC-CCccCCc-----CCHHHHHHHHHHHhhcC--CC--eEEEeCCH
Confidence 5678999755 1 225788888876654 222 1111111 23456778889999997 45 79999999
Q ss_pred HHHHHHHHhhcC--------CCCC-CeEEEecccccc-hHHHHHHHHh----cC-----CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP--------WSHQ-SSYMYTMENHNS-VLGIREYALS----QG-----AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~--------~~~g-~~vl~~~~~h~s-~~~~~~~~~~----~G-----~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++. ..+| +.||+.+..|.+ +..+...... .+ ..+..+|.+
T Consensus 132 seA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------------ 199 (433)
T 1z7d_A 132 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD------------ 199 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT------------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC------------
Confidence 999999888752 1345 788877655443 3333332210 00 234444432
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc----CHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF----NLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~----~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|+++++ ++++ ++++++|+++.+++++|.+. ++++|.++|++ +|+++|+|
T Consensus 200 --------d~~~le--~~l~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~g~llI~D 252 (433)
T 1z7d_A 200 --------DLEALE--EELK-----DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK------------YNVLFVAD 252 (433)
T ss_dssp --------CHHHHH--HHHT-----STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEE
T ss_pred --------CHHHHH--HHhC-----CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 356666 4442 35789999988888899876 67888888887 99999999
Q ss_pred cccc-CCCCCC----CCCCCCCcEEEEeccccccCCC--cceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 250 AAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYPT--GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 250 ~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
++|+ +|.... +.....+|++ |++|+++ +. .+|++++++++++.+.+...+
T Consensus 253 Ev~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~-------------------- 309 (433)
T 1z7d_A 253 EVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALS-GGHYPISAVLANDDIMLVIKPGEHG-------------------- 309 (433)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEECHHHHTTCCTTCCC--------------------
T ss_pred cCccCCCcCCcchhhHhcCCCCCEE--EECcccc-CCCCCeEEEEECHHHHhhhcccccc--------------------
Confidence 9997 332111 1112346877 5669988 52 289999999887665542111
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
...+.|....++..++++.+.+ +.+.+++.++++++.+.|+++.. +.+.+..+.+ .+.++++
T Consensus 310 ----~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~---------~g~~~~i 371 (433)
T 1z7d_A 310 ----STYGGNPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKRELK--DSKIVRDVRG---------KGLLCAI 371 (433)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT--TCTTEEEEEE---------ETTEEEE
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEe---------eeeEEEE
Confidence 0113455666677778887765 25678888999999999876510 0122222211 2788889
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+++.. .+...+.+.|.++||.++++. .+.+|+++++.
T Consensus 372 ~~~~~~---~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~iRi~~~~~ 409 (433)
T 1z7d_A 372 EFKNEL---VNVLDICLKLKENGLITRDVH---------------------------------------DKTIRLTPPLC 409 (433)
T ss_dssp EECTTT---CCHHHHHHHHHHTTEECCEET---------------------------------------TTEEEECCCTT
T ss_pred EEccCh---hHHHHHHHHHHHCCeEEecCC---------------------------------------CCEEEEECCcC
Confidence 886431 123468888888999987631 46899999999
Q ss_pred CCHHHHHHHHHhhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~~ 501 (508)
+|++|++++++.|+++++.
T Consensus 410 ~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 410 ITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 194
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=4.6e-21 Score=199.84 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=212.6
Q ss_pred CCCeeeeCCCCC---C---C-CHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcC
Q 010538 39 NGTVYLDHAGAT---L---Y-SELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTS 110 (508)
Q Consensus 39 ~~~iyld~~~~~---~---~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~ 110 (508)
++..|+|..++. + . +|.+++++.+.+. .........+. .....+.++.++++++++ ++ +|+||+
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~-~~~~~~~~~~~-----~~~~~~l~~~la~~~~~~~~~--~v~~~~ 111 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ-KLAHAAANDFY-----NIPQLELAKKLVTYSPGNFQK--KVFFSN 111 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT-TSCCCSCSCSC-----CHHHHHHHHHHHHHSSCSSCE--EEEEES
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHh-hCccccccccC-----CHHHHHHHHHHHHhCCCCcCC--EEEEeC
Confidence 567899986543 2 2 7888888866542 22100001111 234566778999999998 77 899999
Q ss_pred ChHHHHHHHHhhcCCCCCCeEEEecc-cccchHHHHHHH-----Hhc-----CCeEEEEccCCccCcc-cccccc-cccc
Q 010538 111 GATAALKLVGEAFPWSHQSSYMYTME-NHNSVLGIREYA-----LSQ-----GAAAFAIDVEEAVDND-GLSESL-VTST 177 (508)
Q Consensus 111 g~t~al~~~~~~l~~~~g~~vl~~~~-~h~s~~~~~~~~-----~~~-----G~~v~~v~~~~~~~~~-~l~~~~-~~~~ 177 (508)
|+++|+++++.++....|+.||+... .|+.+....... .+. +..++.+|.+...... ..+... +...
T Consensus 112 gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~ 191 (419)
T 2eo5_A 112 SGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSEL 191 (419)
T ss_dssp SHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHH
T ss_pred chHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhh
Confidence 99999999988652212777777764 444554444321 111 2357777775321100 000000 0000
Q ss_pred ccccchhhhh-cCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccc
Q 010538 178 KISLLPIQRR-KGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAK 252 (508)
Q Consensus 178 ~~~~d~~~l~-~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~ 252 (508)
.- .|+++++ + ++++ ....+++++|+++.++|+||.+.+ +++|.++|++ +|+++|+|++|
T Consensus 192 ~~-~~~~~l~~~--~i~~-~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~------------~~~~li~DE~~ 255 (419)
T 2eo5_A 192 VN-RVIEFIEDY--IFVN-LVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKK------------YGILLVDDEVQ 255 (419)
T ss_dssp HH-HHHHHHHHT--HHHH-TCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------HTCEEEEECTT
T ss_pred HH-HHHHHHHHH--HHhh-ccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccc
Confidence 00 0233332 1 0100 000146788888877788998777 7888888887 99999999999
Q ss_pred c-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccc
Q 010538 253 G-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELF 326 (508)
Q Consensus 253 ~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (508)
+ +|... .+......|++ |++|.++++ .++|+++++++++ .+ +. . . .
T Consensus 256 ~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~---~-~--------------------~ 307 (419)
T 2eo5_A 256 MGLGRTGKLFAIENFNTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PG---M-H--------------------S 307 (419)
T ss_dssp TTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC------------------------------
T ss_pred cCCccCcchhhHHhcCCCCCEE--EecccccCCccceEEEEEchHhh-cC-Cc---c-c--------------------C
Confidence 8 54322 12222346766 566988843 4589999998865 33 21 0 0 0
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeC
Q 010538 327 EDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKR 406 (508)
Q Consensus 327 ~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 406 (508)
...+.|..++++..++++.+.+ +.+++++++++|.+.|+++ +..+.+ .++++++.+..
T Consensus 308 ~t~~~n~~~~~aa~aal~~~~~-----~~~~~~~~~~~l~~~L~~~--------~~~~~~---------~g~~~~i~~~~ 365 (419)
T 2eo5_A 308 NTFGGNALACAIGSKVIDIVKD-----LLPHVNEIGKIFAEELQGL--------ADDVRG---------IGLAWGLEYNE 365 (419)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTS--------SSEEEE---------ETTEEEEECSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh--------hhheEe---------eeEEEEEEEec
Confidence 1123466677777778886543 7788999999999999764 111111 16788887731
Q ss_pred CCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 407 PDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 407 ~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
. . -... +.+.|.++||.++++. .+++||++++.+|.+
T Consensus 366 ~-~--~~~~-~~~~l~~~Gv~v~~~~---------------------------------------~~~lRis~~~~~t~e 402 (419)
T 2eo5_A 366 K-K--VRDR-IIGESFKRGLLLLPAG---------------------------------------RSAIRVIPPLVISEE 402 (419)
T ss_dssp H-H--HHHH-HHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHH
T ss_pred C-c--cHHH-HHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHH
Confidence 0 0 0123 6777778999998741 468999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNF 501 (508)
Q Consensus 487 ev~~l~~~~~~~~~~ 501 (508)
|++++++.|+++++.
T Consensus 403 ~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 403 EAKQGLDILKKVIKV 417 (419)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 195
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.88 E-value=1.9e-21 Score=200.12 Aligned_cols=324 Identities=12% Similarity=0.021 Sum_probs=202.2
Q ss_pred HHHHHHHHH-HHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC-
Q 010538 85 IVRAAREQV-LDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE- 162 (508)
Q Consensus 85 ~~~~~r~~l-a~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~- 162 (508)
..+++++.+ |+++|. .+ ++++++|+|+|+++++.++..++|++|+++...|+++.... ...|++++.++++.
T Consensus 37 ~~~~l~~~~~a~~~g~-~~--~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~---~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQN-RG--AVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAA---IWCGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHHTSTT-CS--EEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHH---HHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHhCC-CC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH---HHcCCEEEEEecCCc
Confidence 367889999 999993 34 68999999999999999976789999999999998876554 45699999999873
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCC--ceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDA--YNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFS 240 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~--t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~ 240 (508)
+..+ |+++++ +++. +++ |++|+ ++|++|...|+++|.++|+
T Consensus 111 ~~~~---------------d~~~l~--~~i~-----~~~~~tk~v~---~~~~~G~~~~~~~i~~la~------------ 153 (377)
T 3ju7_A 111 DWYM---------------DKTVLW--DKIE-----ELKEEVAIVV---PYATFGSWMNLEEYEELEK------------ 153 (377)
T ss_dssp TCSB---------------CHHHHH--HHHH-----HHGGGEEEEC---CBCGGGBCCCCHHHHHHHH------------
T ss_pred cCCc---------------CHHHHH--HHHh-----cCCCCceEEE---EECCCCCccCHHHHHHHHh------------
Confidence 4444 678887 4431 234 88887 4578999999999999888
Q ss_pred CCCeEEEEeccccCCCCCCCCCCC---CCcEEEEe--ccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchh
Q 010538 241 KGRWMVLIDAAKGCVTQPPDLSKY---PVDFVVMS--FYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADID 314 (508)
Q Consensus 241 ~~g~~vivD~a~~~g~~~~d~~~~---~~D~~~~S--~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~ 314 (508)
+|++||+|++|++|... +.... ..|+.++| .||+++ +...|+++.++ ++.++++.....+... .
T Consensus 154 -~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~-~g~gG~~~~~~~~l~~~~~~~~~~g~~~-------~ 223 (377)
T 3ju7_A 154 -KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFG-IGEGGLIYSKNEEDIQRIKRMGNFGFDT-------N 223 (377)
T ss_dssp -TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSC-CBSCEEEEESCHHHHHHHHHHTBTTBCT-------T
T ss_pred -cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCC-CCCcEEEEECCHHHHHHHHHHHhcCCCC-------C
Confidence 69999999999988642 22222 14555555 679998 42246666654 4555555443322110 0
Q ss_pred hhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEE-ecCCCCCccc
Q 010538 315 FVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTI-YGTYTSEVSY 393 (508)
Q Consensus 315 ~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~-~~~~~~~~~~ 393 (508)
+ ......+..+..++...+++. .+ ..++.+.++.+++++++.+.|++++ ++++ +.+....
T Consensus 224 ~----~~~~~g~~~~~~~~~aa~~~~-~l-----~~l~~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~~~~--- 284 (377)
T 3ju7_A 224 R----ECTMMGFNCKMSEYAAAIGIA-TM-----KKWDDKLKERTRISEWYKQLLQSNG------LMKKGWQLQKTE--- 284 (377)
T ss_dssp S----CBCSSCCBCCCCHHHHHHHHH-HH-----HTHHHHHHHHHHHHHHHHHHHHHTT------TTTTTCBCCCCS---
T ss_pred C----ceeeccccCCCCHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHhcCCC------CccccccCCCCC---
Confidence 0 000111111222222222111 22 2367778888999999999998863 2211 1111110
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCC--CCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCC
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGC--FCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKP 471 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 471 (508)
..-..++.+.+++. .+...+.+.|.++||.++.+. .|.... .+. ++.+..++. -....
T Consensus 285 ~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~~~~~~~~~~~~~~---~~~---~~~~~~~p~----------~~~~~ 344 (377)
T 3ju7_A 285 AVIQQFMPILCPEE----VRNKQVIEDLKKQKIEARLYFSPSCHQQV---LFR---NYKSTDLTR----------TNKIA 344 (377)
T ss_dssp CBCCSSEEEECCTT----SCHHHHHHHHHTTTBCCBCTTSSCGGGSG---GGT---TSCBSCCHH----------HHHHH
T ss_pred cceEEEEEEEeCCh----hhHHHHHHHHHHCCCceecccCCccccch---hhh---cCCCCCCHH----------HHHHH
Confidence 00122345565542 124568999999999998875 232211 111 000000100 00113
Q ss_pred CceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 472 TGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 472 ~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.+.||++++...|++|++++++.|++++.
T Consensus 345 ~~~l~lp~~~~~t~~di~~v~~~l~~~~~ 373 (377)
T 3ju7_A 345 KRIVSLPLWEGMTKEIVEQIVICLGQKVV 373 (377)
T ss_dssp HHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred hCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999988764
No 196
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.88 E-value=7.5e-21 Score=198.63 Aligned_cols=357 Identities=10% Similarity=-0.030 Sum_probs=207.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++ +..+|.+++++.+... .. ...... ........+++++++++++.+.+ +|+||+|+
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~~~----~~~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 98 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAA-RL-PFVHGS----QFSSDVLEEYAGRLARFVGLPTF--RFWAVSGG 98 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHH-HC-CCCCTT----TCEEHHHHHHHHHHHHHTTCTTC--EEEEESSH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHH-hc-cccccc----ccCCHHHHHHHHHHHHhCCCCCC--EEEEeCcH
Confidence 56778998763 2238888888766543 21 111110 11234567788999999998888 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHhc-CC-----------eEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALSQ-GA-----------AAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~~-G~-----------~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++.. .+++.|++.+..|+.+......+... .. .+..+|.......
T Consensus 99 ~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 171 (430)
T 3i4j_A 99 SEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN------- 171 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSC-------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccch-------
Confidence 9999998887632 34678888776665543322211110 00 2222332211000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCC-CCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECN-FSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n-~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
-..|+++++ +++.+. ..+++++|++..+++ ++|.+.+ +++|.++|++ +|+++|+
T Consensus 172 -----~~~~~~~le--~~l~~~--~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~ 230 (430)
T 3i4j_A 172 -----GAEDAEGLR--ALLERE--GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDE------------AGIIFIA 230 (430)
T ss_dssp -----HHHHHTHHH--HHHHHH--CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHH------------HTCEEEE
T ss_pred -----hhHHHHHHH--HHHHhc--CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 001345565 444210 014678888888888 9999888 8888888887 9999999
Q ss_pred ecccc-CCCCC--CCCC---CCCCcEEEEeccccccCCCc---ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 249 DAAKG-CVTQP--PDLS---KYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 249 D~a~~-~g~~~--~d~~---~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
|++|+ ++... .... ....|+++ ++|.++ + | +|++++++++++.+.+.-..
T Consensus 231 DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~-~-G~~r~G~~~~~~~i~~~~~~~~~~----------------- 289 (430)
T 3i4j_A 231 DEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLA-A-GYAPLAGLLAAPQVYETVMGGSGA----------------- 289 (430)
T ss_dssp ECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGT-T-TSSCCEEEEECHHHHHHHHHTTCB-----------------
T ss_pred echhhCCCcccchhhhhhhcCCCCcEEE--Eccccc-C-CccccEEEEECHHHHHHHhccCCc-----------------
Confidence 99987 43221 1111 22356665 559988 4 5 79999999987766542000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCce
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSM 399 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (508)
.......+.|...+++..++++.+.+ +.+.++++++.+++++.|.++.. ..+++..+.+. +.+
T Consensus 290 ---~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~---------g~~ 352 (430)
T 3i4j_A 290 ---FMHGFTYAGHPVSVAAGLSVLDIVER---EDLTGAAKERGAQLLAGLQALQA--RFPQMMQVRGT---------GLL 352 (430)
T ss_dssp ---CCCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEEE---------TTE
T ss_pred ---ccccCCCCCCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEEE---------EEE
Confidence 00001123455666666777887655 34455666666666666554310 00245444332 678
Q ss_pred EEEEeeCCCCCc-----cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 400 VSFNLKRPDGSW-----FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 400 v~~~~~~~~~~~-----~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+++.+.+..... -...++.+.|.++||.++++..+..+. .+++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--------------------------------~~~~ 400 (430)
T 3i4j_A 353 LGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNG--------------------------------RGDH 400 (430)
T ss_dssp EEEEEC------------CHHHHHHHHHHTTEECC-------------------------------------------CE
T ss_pred EEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCC--------------------------------CCCE
Confidence 888875422110 012457888889999999864332221 2578
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+||++++..|.+|+++++++|+++++.
T Consensus 401 iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 401 LLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 197
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.88 E-value=7.3e-22 Score=205.13 Aligned_cols=309 Identities=11% Similarity=0.060 Sum_probs=210.2
Q ss_pred HHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEE
Q 010538 28 QIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCI 107 (508)
Q Consensus 28 ~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~ 107 (508)
.++. +|+.+ +..++.|. ..+++++.+.......-++.+.+..+.. ..+++++.+|+++|++.. ++
T Consensus 15 ~~~~-~~~~~-~~~~~~n~-------~~vl~a~~~~~~~~~~~~~~~~~~y~~~---~~~~Le~~lA~l~g~e~a---lv 79 (409)
T 3jzl_A 15 QIDD-LQNKT-DEIAEFNQ-------AKVLDAFQENKVSDFHFHPSTGYGYDDE---GRDTLERVYATVFKTEAA---LV 79 (409)
T ss_dssp HHHH-HHHHH-HHHHHHHH-------HHHHHHHHHTTCCGGGGCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EE
T ss_pred HHHH-HHHHH-HHHHHhhH-------HHHHHHHHHhhhhhhccCCCcCCCCChh---HHHHHHHHHHHHhCCCcE---EE
Confidence 4666 78877 67777773 5677777664332222233333333322 266788999999999744 55
Q ss_pred E--cCChHHHHHHHHhhcCCCCCCeEEEec-ccccchHHHH-------HHHHhcCCeEEEEccCCccCcccccccccccc
Q 010538 108 F--TSGATAALKLVGEAFPWSHQSSYMYTM-ENHNSVLGIR-------EYALSQGAAAFAIDVEEAVDNDGLSESLVTST 177 (508)
Q Consensus 108 ~--t~g~t~al~~~~~~l~~~~g~~vl~~~-~~h~s~~~~~-------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~ 177 (508)
+ ++|+++|+.+++.++ .++|++|+++. ..|+++.... ..++..|++++.+|.+.++.+
T Consensus 80 ~p~~~sGt~Ai~~al~al-l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~----------- 147 (409)
T 3jzl_A 80 RPQIISGTHAISTVLFGI-LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDV----------- 147 (409)
T ss_dssp ETTSCSHHHHHHHHHHHH-CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCC-----------
T ss_pred ECCCccHHHHHHHHHHHh-cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCc-----------
Confidence 4 888999999999998 78899999997 7777776554 345667999999998766656
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeC----CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPS----ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~----~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
|+++++ +++ +++|++|++++ ++|+||.+.|+++|.++|++ ..+|+++++|++++
T Consensus 148 ----d~e~l~--~ai------~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~----------~~~~~~livD~a~~ 205 (409)
T 3jzl_A 148 ----DFPRIA--KKM------TPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKN----------INPEVIVFVDNCYG 205 (409)
T ss_dssp ----CHHHHH--HHC------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHH----------HCTTCEEEEECTTC
T ss_pred ----CHHHHH--Hhc------cCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHh----------hCCCCEEEEeCCcc
Confidence 688888 555 46899999999 99999999999999999984 01699999999998
Q ss_pred CCCCCCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 254 CVTQPPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 254 ~g~~~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.+....+....++|++++|+||++|++.. .|+++.++++++.+.......+ .....|..
T Consensus 206 ~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~-------------------~g~~~g~~ 266 (409)
T 3jzl_A 206 EFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPG-------------------IGREAGAS 266 (409)
T ss_dssp TTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTT-------------------TGGGCCCC
T ss_pred cccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccc-------------------cccccccc
Confidence 77644444556899999999999984321 3999999988887764311100 00111211
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCc
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSW 411 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 411 (508)
.....++...++. ...+.++..+.+.++.+.|+++ +++++..+.. .++..+++|.+++.+
T Consensus 267 -~~~~~~~l~gl~~-----~~~r~~~~~~~a~~la~~L~~~-------g~~v~p~~~~----~~~~~i~~i~l~~~~--- 326 (409)
T 3jzl_A 267 -LYSLLEMYQGFFL-----APHVTAQAIKGARFTAAMLAEF-------GVEADPVWDA----PRTDLIQSVSFHNKE--- 326 (409)
T ss_dssp -TTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHT-------TCEEESCTTS----CCSSSCCEEECSCHH---
T ss_pred -HHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCCC----CCccEEEEEEeCCHH---
Confidence 1112223333333 3556777888999999999987 4666432211 123448888886321
Q ss_pred cCHHHHHHHHhhCC
Q 010538 412 FGYREVEKLASLSG 425 (508)
Q Consensus 412 ~~~~~l~~~L~~~g 425 (508)
....+.+.|++..
T Consensus 327 -~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 327 -KMVAFAQAIQAAS 339 (409)
T ss_dssp -HHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHhcC
Confidence 2234667777664
No 198
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.87 E-value=6.7e-21 Score=200.23 Aligned_cols=361 Identities=11% Similarity=-0.002 Sum_probs=223.3
Q ss_pred CCCeeeeCC------CCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHA------GATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|.. ..+..+|.+++++.+.+ .... ... .. ........++++.++++++.+++ +|+||+|+
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~-~~~~--~~~-~~--~~~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 119 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQL-STLD--YSP-GF--QYGHPLSFQLAEKITDLTPGNLN--HVFFTDSG 119 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHT-TTCS--CCC-SS--SCCCHHHHHHHHHHHTTSSTTEE--EEEEESSH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHH-HhCC--Ccc-cc--ccCCHHHHHHHHHHHHhCCCCCC--EEEEcCcH
Confidence 567889985 23445788888876654 3221 111 10 01234567888999999988777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccc-cchHHHHHHHH----hcC-----CeEEEEccCCccCc--ccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENH-NSVLGIREYAL----SQG-----AAAFAIDVEEAVDN--DGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h-~s~~~~~~~~~----~~G-----~~v~~v~~~~~~~~--~~l~~~~ 173 (508)
++|+++++.++.. ++++.||+....| .....+..... +.+ ..+..++....... ..++
T Consensus 120 sea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d--- 196 (449)
T 3a8u_X 120 SECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGM--- 196 (449)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSS---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCC---
Confidence 9999999887631 1567787765444 44444443311 001 13445544311000 0000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
....-..++++++ ++|++. ..+++++|+++.++++||.+.| +++|.++|++ +|+++|+|
T Consensus 197 -~~~~~~~~~~~le--~~l~~~--~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~------------~~~~li~D 259 (449)
T 3a8u_X 197 -PKEGGIALADELL--KLIELH--DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQ------------HNILLVFD 259 (449)
T ss_dssp -CSSSHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------HTCEEEEE
T ss_pred -hHHHHHHHHHHHH--HHHHhc--CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHH------------hCCEEEEe
Confidence 0000000166666 444211 0146788888888888999998 9999999997 99999999
Q ss_pred cccc-CCCCC--CCCC--CCCCcEEEEeccccccCCCc---ceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 250 AAKG-CVTQP--PDLS--KYPVDFVVMSFYKIFGYPTG---LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 250 ~a~~-~g~~~--~d~~--~~~~D~~~~S~~K~~g~P~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
++|+ +|... ..+. ....|++ |++|+++ + | +|++++++++++.+.+...+... .
T Consensus 260 ev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~~G~~~~~~~~~~~l~~~~~~~~~---------------~ 320 (449)
T 3a8u_X 260 EVITGFGRTGSMFGADSFGVTPDLM--CIAKQVT-N-GAIPMGAVIASTEIYQTFMNQPTPEYA---------------V 320 (449)
T ss_dssp CTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-T-TSSCCEEEEEEHHHHHHHHTCSSCTTS---------------C
T ss_pred ccccCccccCcchhhhhcCCCCCEE--EEccccc-C-CCCceEEEEECHHHHHHhhccCccccc---------------c
Confidence 9994 66432 1112 2246876 5669988 5 5 89999998887766542100000 0
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
........+.|..++++..++++.+.+. .+.++++++.+++++.|+++.. .+.+..+.+ .+.+++
T Consensus 321 ~~~~~~t~~~~~~~~aa~~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~~---------~g~~~~ 385 (449)
T 3a8u_X 321 EFPHGYTYSAHPVACAAGLAALCLLQKE---NLVQSVAEVAPHFEKALHGIKG---AKNVIDIRN---------FGLAGA 385 (449)
T ss_dssp SSCCCCTTTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHTTTT---STTEEEEEE---------ETTEEE
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhc---CCCeEEEee---------eEEEEE
Confidence 0000011234566677777788877653 5678889999999999987521 122222111 278899
Q ss_pred EEeeCCCCCc-cCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecC
Q 010538 402 FNLKRPDGSW-FGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFG 480 (508)
Q Consensus 402 ~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~ 480 (508)
+.++...... .+..++.+.|.++||.++++ .+.+||+++
T Consensus 386 i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRis~~ 425 (449)
T 3a8u_X 386 IQIAPRDGDAIVRPFEAGMALWKAGFYVRFG----------------------------------------GDTLQFGPT 425 (449)
T ss_dssp EEECCBTTBSSHHHHHHHHHHHHHTEECEEE----------------------------------------TTEEEECCC
T ss_pred EEEecCcccccccHHHHHHHHHHCCcEEecC----------------------------------------CCEEEEECC
Confidence 9886432110 01124778888889998874 257999999
Q ss_pred CCCCHHHHHHHHHhhhhhhhh
Q 010538 481 YMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 481 ~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.+|.+|+++++++|+++++.
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 199
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.87 E-value=8.6e-20 Score=191.55 Aligned_cols=328 Identities=12% Similarity=0.080 Sum_probs=217.6
Q ss_pred CCCeeeeCCCC---CC---CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA---TL---YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~---~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. .. .+|.+++++.+... .. ......+ ......++++.++++++ .+ +++|++|+
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~-~~-~~~~~~~-----~~~~~~~l~~~la~~~g--~~--~v~~~~sG 142 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD-KL-TLTSRAF-----YNNVLGEYEEYITKLFN--YH--KVLPMNTG 142 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHT-TC-SCCCTTS-----EESSHHHHHHHHHHHHT--CS--EEEEESSH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHH-hc-CcccCcc-----CCHHHHHHHHHHHHhcC--CC--EEEEeCCH
Confidence 56789997662 22 67888888766542 21 1111111 12345677888999987 45 79999999
Q ss_pred HHHHHHHHhhcC--------CCCC-CeEEEecccc-cchHHHHHHHH----hcC-----CeEEEEccCCccCcccccccc
Q 010538 113 TAALKLVGEAFP--------WSHQ-SSYMYTMENH-NSVLGIREYAL----SQG-----AAAFAIDVEEAVDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~--------~~~g-~~vl~~~~~h-~s~~~~~~~~~----~~G-----~~v~~v~~~~~~~~~~l~~~~ 173 (508)
++|+.+++.++. ..+| +.||+.+..| .++........ +.+ ..+..+|.+
T Consensus 143 seA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~------------ 210 (439)
T 2oat_A 143 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN------------ 210 (439)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS------------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC------------
Confidence 999999888752 1234 6777776444 44444433210 011 345555542
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCcccc----CHHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRF----NLDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~----~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
|+++++ ++++ ++++++|++..+++++|.+. ++++|.++|++ +|+++|+|
T Consensus 211 --------d~~~le--~~l~-----~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~gillI~D 263 (439)
T 2oat_A 211 --------DLPALE--RALQ-----DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR------------HQVLFIAD 263 (439)
T ss_dssp --------CHHHHH--HHTT-----STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEE
T ss_pred --------CHHHHH--HHhC-----CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 366777 5552 35689999988888899877 68888888887 99999999
Q ss_pred cccc-CCCCC--C--CCCCCCCcEEEEeccccccCCC--cceEEEEechhHhhhccccccCceEEecccchhhhhhccCc
Q 010538 250 AAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPT--GLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGV 322 (508)
Q Consensus 250 ~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (508)
++|. +|... . +......|++ |++|+++ +. .+|++++++++++.+.+...+.
T Consensus 264 Ev~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~------------------- 321 (439)
T 2oat_A 264 EIQTGLARTGRWLAVDYENVRPDIV--LLGKALS-GGLYPVSAVLCDDDIMLTIKPGEHGS------------------- 321 (439)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEECHHHHTTSCTTSSCC-------------------
T ss_pred ccccCCccCCcchhHHHhCCCCcEE--Eeccccc-CCCCCeEEEEECHHHHhccCCCCccc-------------------
Confidence 9995 33211 1 2222346876 6679888 41 2899999998876655421110
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 323 EELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 323 ~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
..+.|....++..++++.+.+. .+.+++.++++++.+.|+++.. +.+..+.+ .+.++++
T Consensus 322 -----t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~l~~----~~~~~~~~---------~g~~~~v 380 (439)
T 2oat_A 322 -----TYGGNPLGCRVAIAALEVLEEE---NLAENADKLGIILRNELMKLPS----DVVTAVRG---------KGLLNAI 380 (439)
T ss_dssp -----SSTTCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTSCT----TTEEEEEE---------ETTEEEE
T ss_pred -----CCCcCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHhcC----CCcEEEEe---------eeeEEEE
Confidence 1133556666777788877653 5678899999999999987621 22211111 2688888
Q ss_pred EeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 403 NLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 403 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
.+++..+ .+..++.+.|.++||.++++. .+.+|+++++.
T Consensus 381 ~l~~~~~--~~~~~l~~~l~~~Gv~v~~~~---------------------------------------~~~iRi~~~~~ 419 (439)
T 2oat_A 381 VIKETKD--WDAWKVCLRLRDNGLLAKPTH---------------------------------------GDIIRFAPPLV 419 (439)
T ss_dssp EECCCSS--CCHHHHHHHHHHTTEECCBSS---------------------------------------SSEEEECCCTT
T ss_pred EEecCcc--HHHHHHHHHHHHCCeEEecCC---------------------------------------CCEEEEECccC
Confidence 8864311 234568888888999987631 57899999999
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
+|++|++++++.|+++++
T Consensus 420 ~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 420 IKEDELRESIEIINKTIL 437 (439)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 200
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.87 E-value=8e-21 Score=198.75 Aligned_cols=289 Identities=10% Similarity=-0.038 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHcC------CCCCCceEEEcCChHHHHHHHHhhcC-------CCCCCeEEEecccccchHHHHHHHHhcC
Q 010538 86 VRAAREQVLDYFN------ASMKDYKCIFTSGATAALKLVGEAFP-------WSHQSSYMYTMENHNSVLGIREYALSQG 152 (508)
Q Consensus 86 ~~~~r~~la~~~~------~~~~~~~i~~t~g~t~al~~~~~~l~-------~~~g~~vl~~~~~h~s~~~~~~~~~~~G 152 (508)
..++|+.+|++++ ++++ +|++|+|+++++.+++.++. ..+|+.|+++...|+++.... +..|
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~--~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~---~~~g 176 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDR--YIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQT---KYFD 176 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTC--EEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHH---HHSC
T ss_pred hHHHHHHHHHHHHHhCCcCCCCC--EEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHH---HHcC
Confidence 3566777777775 6777 89999999999999999983 578999999987777665444 4457
Q ss_pred CeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcc
Q 010538 153 AAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 153 ~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
.+++... + |++.++ +++ ++++++|++++++||||.+++ + +++
T Consensus 177 ~~~~~~~------~---------------d~~~l~--~~~------~~~~k~v~l~~p~NPtG~~~~-~----~l~---- 218 (427)
T 2hox_A 177 KKGYVWA------G---------------NAANYV--NVS------NPEQYIEMVTSPNNPEGLLRH-A----VIK---- 218 (427)
T ss_dssp BTTEEEE------E---------------EGGGGT--TCS------CGGGEEEEEESSCTTTCCCCC-C----SST----
T ss_pred Ceeeeec------C---------------CHHHHH--Hhh------cCCceEEEEcCCCCCcccccH-H----HHc----
Confidence 7765332 2 466777 444 457899999999999999999 4 223
Q ss_pred ccccCCCCCCCeEEEEeccccCCCCC-CCCCCCCCcEEEEeccccccCCCc--ceEEEEe-chhHhhhccccccCceEEe
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVTQP-PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMR-NDAAKLLKNTYFSGGTVAA 308 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~~~-~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~ 308 (508)
++..++|.++.....+ .++. .+.++++.|+||.+| ++| +|+++++ +++++.+.....
T Consensus 219 ----------~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~l~~~l~~~~~------- 279 (427)
T 2hox_A 219 ----------GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYMT------- 279 (427)
T ss_dssp ----------TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHHH-------
T ss_pred ----------CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCC-CCCceEEEEEECCHHHHHHHHHHHH-------
Confidence 3467888776432211 2222 467999999999998 667 8999995 777766654311
Q ss_pred cccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH----------hcChHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 010538 309 SIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN----------SLTVPAICRHIASLGMYVRKVLLSLRHENGA 378 (508)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~----------~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~ 378 (508)
....+++.+. ..++..+++... +..++..+++++++++++.+.|++.+
T Consensus 280 ----------------~~~~~~~~~~-q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----- 337 (427)
T 2hox_A 280 ----------------KNTEGTPRET-QLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSD----- 337 (427)
T ss_dssp ----------------HHTSSCCHHH-HHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSS-----
T ss_pred ----------------hcCCCCCHHH-HHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCc-----
Confidence 0112233333 333333444311 12245677888999999999998873
Q ss_pred ceEEE--ec-CCC---CCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhh
Q 010538 379 DVCTI--YG-TYT---SEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLS 452 (508)
Q Consensus 379 ~~~~~--~~-~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~ 452 (508)
++.+ +. +.. ......+.+.++++++++ +..++ ..++++++||.+++|..|..
T Consensus 338 -g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~----~~~ll~~~gI~v~pg~~f~~---------------- 395 (427)
T 2hox_A 338 -RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKD----CYQTFQNGRINTQNGVGFEA---------------- 395 (427)
T ss_dssp -SEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCS----HHHHHHHTTEECEEGGGGTS----------------
T ss_pred -CccccccccccccccccccCCCCceEEEEECCC-cHHHH----HHHHHHHCCEEEcCCCccCC----------------
Confidence 5654 22 210 000001227888889865 22221 44456789999999875522
Q ss_pred hhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 453 NIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.++++|||++. +.++++.+++.|+++++
T Consensus 396 ------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 396 ------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp ------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred ------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 15789999994 89999999999888764
No 201
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.86 E-value=1.6e-20 Score=197.74 Aligned_cols=350 Identities=11% Similarity=0.061 Sum_probs=217.5
Q ss_pred CCCeeeeCCC------CCCCCHHHH-H-HHHH---HhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcC-CCCCCceE
Q 010538 39 NGTVYLDHAG------ATLYSELQM-E-AIFR---DFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFN-ASMKDYKC 106 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~-~-a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~-~~~~~~~i 106 (508)
++..|+|..+ .+..+|.++ + ++.+ .... .. .....+ ......++.+.++++++ .+++ +|
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~-~~-~~~~~~-----~~~~~~~la~~la~~~~~~~~~--~v 122 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAAL-NK-PSNSDV-----YSVAMARFVETFARVLGDPALP--HL 122 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHT-CC-CCTTTC-----CCHHHHHHHHHHHHHHCCTTCC--EE
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHh-cC-CCCccc-----CCHHHHHHHHHHHHhcCCCCCC--EE
Confidence 5778999733 234588888 8 7766 4322 11 000111 23446677888999997 5666 89
Q ss_pred EEcCChHHHHHHHHhhcC--CC-----------CCCeEEEecccccc-hHHHHHHH-----HhcCC-----eEEEEccCC
Q 010538 107 IFTSGATAALKLVGEAFP--WS-----------HQSSYMYTMENHNS-VLGIREYA-----LSQGA-----AAFAIDVEE 162 (508)
Q Consensus 107 ~~t~g~t~al~~~~~~l~--~~-----------~g~~vl~~~~~h~s-~~~~~~~~-----~~~G~-----~v~~v~~~~ 162 (508)
+||+|+++|++.++..+. .. +++.||+....|.+ ...+.... .+.+. .+..+|.+.
T Consensus 123 ~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 202 (449)
T 2cjg_A 123 FFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMR 202 (449)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred EEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCC
Confidence 999999999999886542 11 27788888754443 33222111 11222 455565533
Q ss_pred ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCC
Q 010538 163 AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISP 238 (508)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~ 238 (508)
.+ .+. ..+ ...-..++++++ +.+++ ..+++++|++..++|++|.+.+ +++|.++|++
T Consensus 203 ~~-~~~-~~~---~~~~~~~~~~le--~~i~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~--------- 263 (449)
T 2cjg_A 203 PG-LDE-PAM---AALEAEALRQAR--AAFET---RPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE--------- 263 (449)
T ss_dssp TT-CCH-HHH---HHHHHHHHHHHH--HHHHH---STTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHH---------
T ss_pred ch-hhc-ccc---chhhHHHHHHHH--HHHHh---cCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH---------
Confidence 00 000 000 000001445566 44421 1357899999998999998777 7777777776
Q ss_pred CCCCCeEEEEecccc-CCCCCC--C--CCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccch
Q 010538 239 FSKGRWMVLIDAAKG-CVTQPP--D--LSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 239 ~~~~g~~vivD~a~~-~g~~~~--d--~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
+|+++|+|++|+ +|.... . ......|+++ ++|++ | +|++++++++++.+.+.+.+..
T Consensus 264 ---~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l--~--iG~~~~~~~~~~~l~~~~~~~~--------- 325 (449)
T 2cjg_A 264 ---FDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVA--FGKKT--Q--VCGVMAGRRVDEVADNVFAVPS--------- 325 (449)
T ss_dssp ---TTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGG--S--SEEEEECGGGGGSTTCTTTSTT---------
T ss_pred ---CCcEEEEeccccCCCccCcceeecccCCCceEEE--ecCcc--c--EEEEEECHHHhhhhhhcccCCc---------
Confidence 999999999998 443211 1 1123568775 45988 5 7999999988776554321110
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-EEEecCCCCCcc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV-CTIYGTYTSEVS 392 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~-~~~~~~~~~~~~ 392 (508)
. .....+.|...+++..++++.+.+ +.+.+++.++++++++.|+++.. ..+. +..+.+
T Consensus 326 ---------~-~~~t~~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~~------ 384 (449)
T 2cjg_A 326 ---------R-LNSTWGGNLTDMVRARRILEVIEA---EGLFERAVQHGKYLRARLDELAA--DFPAVVLDPRG------ 384 (449)
T ss_dssp ---------S-SCCSSSSCHHHHHHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHH--HSTTTSEEEEE------
T ss_pred ---------c-cccCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--hCCCceeeEee------
Confidence 0 001123456667777788887765 45678889999999999876410 0012 322222
Q ss_pred cCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 393 YHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 393 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
.+.++.+.+++. .+..++.+.|.++||.++++. .
T Consensus 385 ---~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~v~~~g---------------------------------------~ 418 (449)
T 2cjg_A 385 ---RGLMCAFSLPTT----ADRDELIRQLWQRAVIVLPAG---------------------------------------A 418 (449)
T ss_dssp ---ETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET---------------------------------------T
T ss_pred ---ccEEEEEEECCh----HHHHHHHHHHHHCCeEEecCC---------------------------------------C
Confidence 167888877542 112357777878999988741 4
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+.+|+++++.+|.+|++++++.|+++++.
T Consensus 419 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 419 DTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987653
No 202
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.86 E-value=2.5e-20 Score=194.67 Aligned_cols=360 Identities=9% Similarity=0.016 Sum_probs=220.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++ +..+|.+++++.+... .. ......+ ......++++.++++++.+++ +|+||+|+
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~~~~-----~~~~~~~l~~~la~~~~~~~~--~v~~~~gg 111 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAG-KL-DHLFSEM-----LSRPVVDLATRLANITPPGLD--RALLLSTG 111 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHH-HC-CCCCTTC-----CCHHHHHHHHHHHHHSCTTCC--EEEEESCH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHH-hC-ccccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeCch
Confidence 56789998442 2347888888766543 21 1111111 124466778889999998887 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEeccc-ccchHHHHHHHH--------hcCCeEEEEccCCcc--Cccccccccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMEN-HNSVLGIREYAL--------SQGAAAFAIDVEEAV--DNDGLSESLVTSTKIS 180 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~-h~s~~~~~~~~~--------~~G~~v~~v~~~~~~--~~~~l~~~~~~~~~~~ 180 (508)
++|+.+++.++. ..+++.|++.... |+.......... .....+..++..... ...+ .....-.
T Consensus 112 ~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~ 186 (433)
T 1zod_A 112 AESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER-----NGAYDYL 186 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEE-----TTEECHH
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCC-----chhhhHH
Confidence 999999987642 2345677777644 444443332110 001234445442110 0000 0000001
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CV 255 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g 255 (508)
.|+++++ +++++. ..+++++|+++.++|+||.+.+ +++|.++|++ +|+++|+|++|+ +|
T Consensus 187 ~d~~~le--~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DEv~~~~g 250 (433)
T 1zod_A 187 AELDYAF--DLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA------------RGMLLILDEAQTGVG 250 (433)
T ss_dssp HHHHHHH--HHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHH------------HTCEEEEECTTTTTT
T ss_pred HHHHHHH--HHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH------------hCCEEEEeccccCCC
Confidence 1467777 554311 0146788888877899998877 8888888887 999999999998 54
Q ss_pred CCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC
Q 010538 256 TQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA 331 (508)
Q Consensus 256 ~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 331 (508)
.... +......|++ |++|.+++.-++|++++++++++.+.+.... . ....+.
T Consensus 251 ~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~---------------------~-~~t~~~ 306 (433)
T 1zod_A 251 RTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSAAIEERAHELGYL---------------------F-YTTHVS 306 (433)
T ss_dssp TTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECHHHHHHHHHTTCC---------------------C-CCTTTT
T ss_pred cCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhHHHHHhhccCCCC---------------------C-CCCCCc
Confidence 3221 1112345665 5669888322389999999887766542000 0 011223
Q ss_pred ChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC--
Q 010538 332 SFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG-- 409 (508)
Q Consensus 332 ~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 409 (508)
|....++..++++.+.+. .+.++++++++++++.|+++.. ..+.+..+.+ .+.++++.+++...
T Consensus 307 ~~~~~~a~~aal~~~~~~---~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~~~---------~g~~~~i~~~~~~~~~ 372 (433)
T 1zod_A 307 DPLPAAVGLRVLDVVQRD---GLVARANVMGDRLRRGLLDLME--RFDCIGDVRG---------RGLLLGVEIVKDRRTK 372 (433)
T ss_dssp CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEEEEETTTT
T ss_pred CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEE---------EEEEEEEEEecCcccc
Confidence 566667777788877653 4567888888888888876410 0012332222 16788888753110
Q ss_pred --CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHH
Q 010538 410 --SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFED 487 (508)
Q Consensus 410 --~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ee 487 (508)
.......+.+.|.++||.+++|..+. .++++||++++.+|.+|
T Consensus 373 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-----------------------------------~~~~lRi~~~~~~t~~~ 417 (433)
T 1zod_A 373 EPADGLGAKITRECMNLGLSMNIVQLPG-----------------------------------MGGVFRIAPPLTVSEDE 417 (433)
T ss_dssp EECTTHHHHHHHHHHHTTEECCEECCTT-----------------------------------SCCEEEECCCTTCCHHH
T ss_pred CCChHHHHHHHHHHHHCCCeEeccCCCC-----------------------------------CCCEEEEECCcCCCHHH
Confidence 00123457788888999998864210 14789999999999999
Q ss_pred HHHHHHhhhhhhhh
Q 010538 488 AKVNRCSSFDFVNF 501 (508)
Q Consensus 488 v~~l~~~~~~~~~~ 501 (508)
++++++.|++.++-
T Consensus 418 i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 418 IDLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 203
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.86 E-value=7.7e-20 Score=191.47 Aligned_cols=350 Identities=13% Similarity=-0.002 Sum_probs=218.2
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCC-CCceEEEcCC
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASM-KDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~~~i~~t~g 111 (508)
++.-|+|..++.+ .+|.+++++.+... .. .... ..........+++++++++++... + +++||+|
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~-~~~~----~~~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g 112 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAA-NP-AGAT----ILSASNAPAVTLAERLLASFPGEGTH--KIWFGHS 112 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHH-SC-SCSC----SSSSEEHHHHHHHHHHHHTTTCTTTE--EEEEESS
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHH-hc-cCcc----ccccCCHHHHHHHHHHHHhCCCCCCC--EEEEeCC
Confidence 5677899877655 68888888766543 22 1111 111134567888999999997665 5 8999999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEe-cccccchHHHHHHHHhcC--C---------eEEEEccCCccCccccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYT-MENHNSVLGIREYALSQG--A---------AAFAIDVEEAVDNDGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~-~~~h~s~~~~~~~~~~~G--~---------~v~~v~~~~~~~~~~l~~~~~~~~~ 178 (508)
+++|+..++.++. ..+++.||+. ...|..+........... . .+..+|.+...... .
T Consensus 113 gsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 182 (439)
T 3dxv_A 113 GSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP----------T 182 (439)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT----------T
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc----------c
Confidence 9999999988741 1234455544 455555544332211100 0 11222322110000 0
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
-..|+++++ +++++ ...+++++|++..+++++|.+.| +++|.++|++ ||+++|+|++|+
T Consensus 183 ~~~d~~~le--~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DE~~~g 246 (439)
T 3dxv_A 183 GDAILTLLT--EKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRA------------HGILVVCDEVKVG 246 (439)
T ss_dssp SHHHHHHHH--HHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEECTTTC
T ss_pred HHHHHHHHH--HHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccC
Confidence 001467777 55521 11457899999999999999999 9999999997 999999999996
Q ss_pred CCCC----CCCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 254 CVTQ----PPDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 254 ~g~~----~~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+|.. ..+......|++ |++|.++ + | +|++++++++++.+.+...+ .
T Consensus 247 ~g~~g~~~~~~~~~~~~di~--s~sK~~~-~-G~riG~~~~~~~~~~~~~~~~~~------------------------~ 298 (439)
T 3dxv_A 247 LARSGRLHCFEHEGFVPDIL--VLGKGLG-G-GLPLSAVIAPAEILDCASAFAMQ------------------------T 298 (439)
T ss_dssp TTTTSSSSGGGGTTCCCSEE--EECGGGG-T-TSCCEEEEEEHHHHTSCSSSSCC------------------------T
T ss_pred CCcCchhhHHHhcCCCCCEE--EEcchhc-C-CcceEEEEECHHHHhhhcCCCcC------------------------C
Confidence 3221 112223346776 6679888 5 4 79999999887766543111 0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.. .+...+++..++++.+.+ +.+.++++++.+++++.|.++.. ..+.+....+. +.++++.+...
T Consensus 299 t~-~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~---------g~~~~~~~~~~ 363 (439)
T 3dxv_A 299 LH-GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGLSELAK--RHPLIGDIRGR---------GLACGMELVCD 363 (439)
T ss_dssp TT-TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEEE---------TTEEEEEEEEE
T ss_pred Cc-ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEEEE---------EEEEEEEEecC
Confidence 11 345556666667776654 44566777777777777765410 00233333221 67888877321
Q ss_pred CC----CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCC
Q 010538 408 DG----SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMS 483 (508)
Q Consensus 408 ~~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~ 483 (508)
.. .......+.+.|.++||.++++.. ..+++||++++..
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~ 406 (439)
T 3dxv_A 364 RQSREPARAETAKLIYRAYQLGLVVYYVGM-------------------------------------NGNVLEFTPPLTI 406 (439)
T ss_dssp TTTTEECHHHHHHHHHHHHHHTEECEEEST-------------------------------------TSCEEEECCCTTC
T ss_pred ccccCCCHHHHHHHHHHHHHCCcEEeecCC-------------------------------------CCCEEEEECCCCC
Confidence 00 001234577888888999987520 1578999999999
Q ss_pred CHHHHHHHHHhhhhhhhhh
Q 010538 484 TFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 484 t~eev~~l~~~~~~~~~~~ 502 (508)
|.+|++++++.|+++++.+
T Consensus 407 t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 407 TETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTG
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 204
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.85 E-value=9.7e-21 Score=197.51 Aligned_cols=293 Identities=14% Similarity=0.055 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE--cCChHHHHHHHHhhcCCCCCCeE
Q 010538 54 ELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF--TSGATAALKLVGEAFPWSHQSSY 131 (508)
Q Consensus 54 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~--t~g~t~al~~~~~~l~~~~g~~v 131 (508)
+.+++++.+........++.+.+..+.. ..+.+++.+|+++|++.. +++ ++|+++|+.+++.++ .++|++|
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~a---lv~p~~~sGt~Ai~~al~al-l~pGD~V 118 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDI---GRDSLDAVYARVFNTESA---LVRPHFVNGTHALGAALFGN-LRPGNTM 118 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EEETTCCSHHHHHHHHHHHH-CCTTCEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHH---HHHHHHHHHHHHhCCcce---EEeCCCccHHHHHHHHHHHH-hCCCCEE
Confidence 5677777553322222233334433322 267788999999999754 554 788899999999998 6889999
Q ss_pred EEec-ccccchHHHH--------HHHHhcCCeEEEEccCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCc
Q 010538 132 MYTM-ENHNSVLGIR--------EYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAY 202 (508)
Q Consensus 132 l~~~-~~h~s~~~~~--------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t 202 (508)
+++. ..|+++.... ..++..|++++.+|.+.++.+ |+++++ +++++ .++|
T Consensus 119 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~---------------D~e~l~--~~l~~----~~~t 177 (427)
T 3i16_A 119 LSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKP---------------NLEEIE--KVLKE----DESI 177 (427)
T ss_dssp EESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSC---------------CHHHHH--HHHHT----CTTE
T ss_pred EEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCc---------------CHHHHH--HHhhC----CCCC
Confidence 9998 7888776555 445667999999998766655 678888 55521 1689
Q ss_pred eEEEEeC----CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCCCCCCCcEEEEecccccc
Q 010538 203 NLFAFPS----ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDLSKYPVDFVVMSFYKIFG 278 (508)
Q Consensus 203 ~lv~~~~----~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~~~~~~D~~~~S~~K~~g 278 (508)
++|++++ ++||||.+.|+++|.++|++ ..+|+++++|++|+.+....+....++|++++|+||++|
T Consensus 178 klV~i~~s~~~p~nptg~i~dl~~i~~la~~----------~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lg 247 (427)
T 3i16_A 178 TLVHIQRSTGYGWRRALLIEDIKSIVDCVKN----------IRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIG 247 (427)
T ss_dssp EEEEEECSCCSSSSCCCCHHHHHHHHHHHHH----------HCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGG
T ss_pred EEEEEEcCCCCCCCCcccHHHHHHHHHHHHH----------hCCCCEEEEECCCccccccCCccccCCeEEEecCcccCC
Confidence 9999999 99999999999999999984 016999999999987764444445689999999999999
Q ss_pred C---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHH
Q 010538 279 Y---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAIC 355 (508)
Q Consensus 279 ~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~ 355 (508)
+ |. .|+++.+++++++++......+ -....+ +.+.....+...++. ...+.
T Consensus 248 g~g~~~-gG~i~~~~~li~~l~~~~~~~~-------------------~g~~~~-~~~~~a~~~l~gl~~-----~~~r~ 301 (427)
T 3i16_A 248 GGIAPT-GGYLAGTKDCIEKTSYRLTVPG-------------------IGGECG-STFGVVRSMYQGLFL-----APHIS 301 (427)
T ss_dssp TTTCCS-CEEEEECHHHHHHHHHHHSCTT-------------------TGGGCC-CCTTCHHHHHHHHHH-----HHHHH
T ss_pred CCCCce-EEEEEECHHHHHHHHHhcccCc-------------------cCccCC-ccHHHHHHHHHHHHH-----HHHHH
Confidence 5 33 3999999998887765321100 000111 111112222223333 35667
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCC
Q 010538 356 RHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSG 425 (508)
Q Consensus 356 ~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~g 425 (508)
++..+.+.++.+.|+++ +++++..+.. .++.-+++|.+.+.+ ....+.+.|+...
T Consensus 302 ~~~~~~a~~la~~L~~~-------g~~V~p~~~~----~~~~~i~~i~l~~~~----~~~~f~~~l~~~~ 356 (427)
T 3i16_A 302 MEALKGAILCSRIMELA-------GFEVMPKYDE----KRSDIIQSIKFNDKD----KLIEFCKGIQTGS 356 (427)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCEEESCTTS----CCSSSCEEEECSSHH----HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhC-------CCeecCCCCC----CCccEEEEEEECCHH----HHHHHHHHHhhcC
Confidence 88888999999999987 4566432211 122338888886421 1234666676653
No 205
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.85 E-value=6e-20 Score=190.42 Aligned_cols=312 Identities=12% Similarity=0.027 Sum_probs=199.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHH-HH-HHhcCCeEEEEc
Q 010538 82 TCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIR-EY-ALSQGAAAFAID 159 (508)
Q Consensus 82 ~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-~~-~~~~G~~v~~v~ 159 (508)
.....+++++.++++.|.+ .+++++|+++|+.++ .++ .++|++|+++...|++..... .. ++..|++++.++
T Consensus 65 ~~p~~~~l~~~la~l~g~~----~~~~~~sG~~Ai~~~-~~l-~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGT----RAFAFASGMAATSTV-MEL-LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCS----EEEEESSHHHHHHHH-HTT-SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCC----CEEEecCHHHHHHHH-HHH-cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 3455778899999999976 345556669999884 455 578999999998888555443 33 566799999998
Q ss_pred cCCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCC
Q 010538 160 VEEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPF 239 (508)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~ 239 (508)
.+ |+++++ +++ .++|++|++++++||+|.+.|+++|.++|++
T Consensus 139 ~~--------------------d~~~l~--~~i------~~~~~~v~~e~~~np~G~~~~l~~i~~la~~---------- 180 (400)
T 3nmy_A 139 LT--------------------DPAAFK--AAI------RADTKMVWIETPTNPMLKLVDIAAIAVIARK---------- 180 (400)
T ss_dssp TT--------------------SHHHHH--HHC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH----------
T ss_pred CC--------------------CHHHHH--HHh------ccCCCEEEEECCCCCCCeeecHHHHHHHHHH----------
Confidence 74 256677 444 4678999999999999999999999999998
Q ss_pred CCCCeEEEEeccccCCC--CCCCCCCCCCcEEEEeccccccCCC-cc-e-EEEE-echhHhhhccccccCceEEecccch
Q 010538 240 SKGRWMVLIDAAKGCVT--QPPDLSKYPVDFVVMSFYKIFGYPT-GL-G-ALIM-RNDAAKLLKNTYFSGGTVAASIADI 313 (508)
Q Consensus 240 ~~~g~~vivD~a~~~g~--~~~d~~~~~~D~~~~S~~K~~g~P~-G~-G-~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~ 313 (508)
+|+++|+|++++.+. .|++ .++|+++.|++|++++|. .+ | ++++ ++++.+.+.....
T Consensus 181 --~g~~livDe~~~~~~~~~~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~------------ 243 (400)
T 3nmy_A 181 --HGLLTVVDNTFASPMLQRPLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN------------ 243 (400)
T ss_dssp --TTCEEEEECTTTHHHHCCGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH------------
T ss_pred --cCCEEEEECCCcccccCChhh---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH------------
Confidence 999999999997543 3333 479999999999998663 24 4 3444 4445544433211
Q ss_pred hhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEE-EecCCCCCcc
Q 010538 314 DFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCT-IYGTYTSEVS 392 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~-~~~~~~~~~~ 392 (508)
...++.+....+. ++..+. .+..+.++..+.++++.+.|++.+ .++ +..|.-. ..
T Consensus 244 ------------~~g~~~~~~~a~~---~l~~l~--~l~~r~~~~~~~a~~l~~~L~~~p------~v~~V~~p~l~-~~ 299 (400)
T 3nmy_A 244 ------------SIGGVQGPFDSFL---ALRGLK--TLPLRMRAHCENALALAQWLETHP------AIEKVIYPGLA-SH 299 (400)
T ss_dssp ------------HHCCBCCHHHHHH---HHHHHT--THHHHHHHHHHHHHHHHHHHTTCT------TEEEEECTTST-TS
T ss_pred ------------hcCCCCCHHHHHH---HHHhHh--HHHHHHHHHHHHHHHHHHHHHcCC------CEeEEECCCCC-CC
Confidence 0112222222222 233222 245667777888899999998763 454 3333210 00
Q ss_pred c---------CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCc---hHHHhhcCCChhhhhhhhhcCCcc
Q 010538 393 Y---------HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNP---GACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 393 ~---------~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
+ ...+++++|.+++.. . ....+.+.|+..++.++.|..++. +... ....-++....++|.
T Consensus 300 ~~~~~~~~~~~g~G~~~~~~l~~~~-~--~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~-~~~~~~~~~~~~~gi---- 371 (400)
T 3nmy_A 300 PQHVLAKRQMSGFGGIVSIVLKGGF-D--AAKRFCEKTELFTLAESLGGVESLVNHPAVM-THASIPVARREQLGI---- 371 (400)
T ss_dssp TTHHHHHHHCSSCCSEEEEEETTHH-H--HHHHHHHHCSSSEECSCCCSSSCEEECTTTT-TTTTSCHHHHHHHTC----
T ss_pred cCHHHHHHhCCCCCceEEEEeCCcH-H--HHHHHHHcCCcceEecCCCCCcceeeCcccc-ccccCCHHHHHhcCC----
Confidence 0 013789999996421 0 112345555555666666654432 1100 000001122334443
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSF 496 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~ 496 (508)
.++.+|+|++..++++.++.+.++|.
T Consensus 372 ----------~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 372 ----------SDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp ----------CTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred ----------CcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 37899999999888888877777664
No 206
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.85 E-value=6.9e-21 Score=198.62 Aligned_cols=308 Identities=12% Similarity=0.081 Sum_probs=206.3
Q ss_pred HHHHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhcc-ccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCce
Q 010538 27 DQIRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTN-VYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYK 105 (508)
Q Consensus 27 ~~~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~ 105 (508)
.+++. +|+.+ +..++.|+ +.+++++.+..... .+.+ ...+..+.. ..+++++.+|+++|++..
T Consensus 29 ~~~~~-~~~~~-~~i~~~n~-------~~Vl~a~~~~~~~~~~~~~-~~gy~Y~~~---g~~~Le~~lA~l~g~e~a--- 92 (427)
T 3hvy_A 29 NDVEK-EFKYY-DEIREYNQ-------LKVLKAFQEERISESHFTN-SSGYGYNDI---GRDSLDRVYANIFNTESA--- 92 (427)
T ss_dssp HHHHH-HHHHH-HHHHHHHH-------HHHHHHHHHTTCCGGGSCC-CCTTCTTCH---HHHHHHHHHHHHHTCSEE---
T ss_pred HHHHH-HHHHH-HHHHHhhH-------HHHHHHHHHHHHHHHhccc-CcCCCCCch---hHHHHHHHHHHHhCCCce---
Confidence 45777 88888 78888886 67888775533221 1222 223332221 267788999999999754
Q ss_pred EEE--cCChHHHHHHHHhhcCCCCCCeEEEec-ccccchHHHH--------HHHHhcCCeEEEEccCCccCccccccccc
Q 010538 106 CIF--TSGATAALKLVGEAFPWSHQSSYMYTM-ENHNSVLGIR--------EYALSQGAAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 106 i~~--t~g~t~al~~~~~~l~~~~g~~vl~~~-~~h~s~~~~~--------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
+++ ++|+++|+.+++.++ .++||+|++.. ..|+++.... ..++..|++++.+|. +++.+
T Consensus 93 lv~p~~~sGt~A~~~al~al-l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~-------- 162 (427)
T 3hvy_A 93 FVRPHFVNGTHAIGAALFGN-LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKV-------- 162 (427)
T ss_dssp EEETTCCSHHHHHHHHHHHT-CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBC--------
T ss_pred EEeCCCCcHHHHHHHHHHHh-cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCc--------
Confidence 554 788899999999998 78999999998 7777766444 345567999999998 44545
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeC----CCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS----ECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~----~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++++ .++|++|++++ ++||||.+.|+++|.++|++ ..+|+++++|+
T Consensus 163 -------d~e~l~--~~i~~----~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~----------~~~g~~livD~ 219 (427)
T 3hvy_A 163 -------DINTVK--EELKK----DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIRE----------VNENVIVFVDN 219 (427)
T ss_dssp -------CHHHHH--HHHHH----CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHH----------HCSSSEEEEEC
T ss_pred -------CHHHHH--HHhhC----CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHH----------hCCCCEEEEEC
Confidence 678888 55421 16899999999 99999999999999999984 01599999999
Q ss_pred cccCCCCCCCCCCCCCcEEEEeccccccC---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccccc
Q 010538 251 AKGCVTQPPDLSKYPVDFVVMSFYKIFGY---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFE 327 (508)
Q Consensus 251 a~~~g~~~~d~~~~~~D~~~~S~~K~~g~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (508)
+++.+....+....++|++++|+||++|+ |.| |+++.+++++++++......+ -...
T Consensus 220 a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~~~~~~~~-------------------~g~~ 279 (427)
T 3hvy_A 220 CYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVPG-------------------IGGE 279 (427)
T ss_dssp TTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHHHHHSCTT-------------------TGGG
T ss_pred CccccccCCCCcccCCeEEEECCcccccccccceE-EEEEECHHHHHHHHHHhhcCC-------------------cccc
Confidence 99887633333456799999999999995 444 999999998887765321100 0011
Q ss_pred CCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCC
Q 010538 328 DGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRP 407 (508)
Q Consensus 328 ~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 407 (508)
.+ +++.....+...++. ...+.++..+.+.++.+.|+++ +++++..+.. .++..+++|.+.+.
T Consensus 280 ~~-~~~~~a~~~~~gl~~-----~~~r~~~~~~~a~~la~~L~~~-------g~~V~p~~~~----~~~~li~~~~l~~~ 342 (427)
T 3hvy_A 280 CG-STFGVMRSLYEGLFM-----APHVTIEAVKGAVFCARIMELA-------GFDVLPKYND----KRTDIIQAIKFNDE 342 (427)
T ss_dssp CC-CCTTCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHT-------TCEEESCTTS----CCSSSEEEEECSSH
T ss_pred cC-CCHHHHHHHHHhHhH-----HHHHHHHHHHHHHHHHHHHHhC-------CCeecCCCCC----CCceEEEEEeCCCH
Confidence 11 111112222233333 2456778888999999999887 4566432211 12234888888532
Q ss_pred CCCccCHHHHHHHHhhC
Q 010538 408 DGSWFGYREVEKLASLS 424 (508)
Q Consensus 408 ~~~~~~~~~l~~~L~~~ 424 (508)
+ ....+.+.|+..
T Consensus 343 ~----~~~~f~~~l~~~ 355 (427)
T 3hvy_A 343 K----KLIDFIKGIQTA 355 (427)
T ss_dssp H----HHHHHHHHHHHT
T ss_pred H----HHHHHHHHhccc
Confidence 1 112355555553
No 207
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.84 E-value=1.9e-19 Score=189.91 Aligned_cols=347 Identities=12% Similarity=0.033 Sum_probs=221.9
Q ss_pred CCC--eeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcC
Q 010538 39 NGT--VYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTS 110 (508)
Q Consensus 39 ~~~--iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~ 110 (508)
++. -|+|..++ +..+|.+++++.+... .........+ ......+++++++++++...+ +|+||+
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~~~-----~~~~~~~L~e~la~~~~~~~~--~v~~~~ 142 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR-VMNHVMFGGL-----THEPAARLAKLLVDITPAGLD--TVFFSD 142 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH-HCSCCCSSSE-----ECHHHHHHHHHHHHHSSTTEE--EEEEES
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH-hccCcccccc-----CCHHHHHHHHHHHHhCCCCcC--EEEEeC
Confidence 455 79998653 3358888888766543 2211111111 234567889999999988777 899999
Q ss_pred ChHHHHHHHHhhcCC-------CCCCeEEEecccccc-hHHHHHH----------HHhcCCeEEEEccCCccCccccccc
Q 010538 111 GATAALKLVGEAFPW-------SHQSSYMYTMENHNS-VLGIREY----------ALSQGAAAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 111 g~t~al~~~~~~l~~-------~~g~~vl~~~~~h~s-~~~~~~~----------~~~~G~~v~~v~~~~~~~~~~l~~~ 172 (508)
|+++|+.+++..+.. .+++.||+....|.. ....... .......+..+|...... .
T Consensus 143 sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~----- 216 (457)
T 3tfu_A 143 SGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDY-D----- 216 (457)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSC-C-----
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCccc-C-----
Confidence 999999998887632 344577776555433 2222111 001112233333321110 0
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
..|+++++ ++|++. .+++++|++.. ++|++|.+.| +++|.++|++ +|+++|
T Consensus 217 -------~~d~~~le--~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~------------~gillI 272 (457)
T 3tfu_A 217 -------PAYSAAFE--AQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRR------------YEVLLI 272 (457)
T ss_dssp -------HHHHHHHH--HHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHH------------HTCEEE
T ss_pred -------HHHHHHHH--HHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHH------------cCCEEE
Confidence 01567777 554211 25789999998 9999999997 7888888887 999999
Q ss_pred Eecccc-CCCCCC----CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 248 IDAAKG-CVTQPP----DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 248 vD~a~~-~g~~~~----d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
+|++|+ +|.... +......|++ |++|.+++. ..+|++++++++.+.+...-.+.
T Consensus 273 ~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~------------------ 332 (457)
T 3tfu_A 273 FDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGA------------------ 332 (457)
T ss_dssp EECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCS------------------
T ss_pred EEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCc------------------
Confidence 999987 432211 1112246777 556988742 14899999999887663110000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.......+.|....++..++++.+.+ +.+.++++++.+++++.|+++.. .+++..+.. .+.+++
T Consensus 333 -~~~~~t~~~n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~vr~---------~G~~~~ 396 (457)
T 3tfu_A 333 -LMHGPTFMANPLACAVSVASVELLLG---QDWRTRITELAAGLTAGLDTARA---LPAVTDVRV---------CGAIGV 396 (457)
T ss_dssp -CCCCCTTTTCHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHHHGGGGG---STTEEEEEE---------CSSCEE
T ss_pred -eeEecCCCcCHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhc---CCCeeeeec---------CCeEEE
Confidence 00001123455666677778887765 35678888899999999887621 123433322 267888
Q ss_pred EEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCC
Q 010538 402 FNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGY 481 (508)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~ 481 (508)
+.+.+. .+..++.+.|.++||.+++. .+.+|+++.+
T Consensus 397 i~l~~~----~~~~~~~~~l~~~Gv~v~~~----------------------------------------~~~lRi~p~~ 432 (457)
T 3tfu_A 397 IECDRP----VDLAVATPAALDRGVWLRPF----------------------------------------RNLVYAMPPY 432 (457)
T ss_dssp EEESSC----CCHHHHHHHHHHTTEECCCB----------------------------------------TTEEEECCCT
T ss_pred EEECCc----ccHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEECCC
Confidence 888653 23456888898999998762 4689999999
Q ss_pred CCCHHHHHHHHHhhhhhhhhhh
Q 010538 482 MSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 482 ~~t~eev~~l~~~~~~~~~~~~ 503 (508)
..|.||+++++++|+++++.+.
T Consensus 433 ~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 433 ICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887654
No 208
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.84 E-value=7e-19 Score=185.02 Aligned_cols=361 Identities=9% Similarity=0.017 Sum_probs=217.2
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++ +..+|.+++++.+.+. .. ...... .......+++++++++++.+. +|+||+|+
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~-~~~~~~-----~~~~~~~~la~~l~~~~~~~~---~v~~~~gg 116 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-TL-SYFPMS-----QSHEPAIKLAEKLNEWLGGEY---VIFFSNSG 116 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-TC-CCCCTT-----SEEHHHHHHHHHHHHHHTSCE---EEEEESSH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHH-hc-CCcccc-----cCCHHHHHHHHHHHHhCCCCc---eEEEeCch
Confidence 66778998554 3347888888766553 21 111111 124556788899999988654 49999999
Q ss_pred HHHHHHHHhhcCC----C---CCCeEEEecccccchHHHHHHHHhcC------------CeEEEEccCCccCc--ccccc
Q 010538 113 TAALKLVGEAFPW----S---HQSSYMYTMENHNSVLGIREYALSQG------------AAAFAIDVEEAVDN--DGLSE 171 (508)
Q Consensus 113 t~al~~~~~~l~~----~---~g~~vl~~~~~h~s~~~~~~~~~~~G------------~~v~~v~~~~~~~~--~~l~~ 171 (508)
|+|++.++..+.. . +++.|++....|.........+ .| ..+..++....... .+-
T Consensus 117 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (452)
T 3n5m_A 117 SEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAA--TGQAQRRYQYEPFASGFLHVTPPDCYRMPGIER-- 192 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHS--CCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTT--
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhc--CCchhhccccCCCCCCCeEeCCCccccCccCCc--
Confidence 9999998888731 3 6778888876665543222211 11 12334443111000 000
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
....-..++++++ +++.+ ...+++++|++..+ +| +|.+.| +++|.++|++ ||+++
T Consensus 193 ---~~~~~~~~~~~le--~~l~~--~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~------------~~~ll 252 (452)
T 3n5m_A 193 ---ENIYDVECVKEVD--RVMTW--ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQK------------HGALL 252 (452)
T ss_dssp ---SCGGGCHHHHHHH--HHHHH--HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHH------------HTCEE
T ss_pred ---hhhHHHHHHHHHH--HHHHh--cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHH------------cCCEE
Confidence 0000001256676 44421 11256788999888 89 999997 8888888887 99999
Q ss_pred EEecccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhcc
Q 010538 247 LIDAAKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQ 320 (508)
Q Consensus 247 ivD~a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 320 (508)
|+|++|+ +|... .+......|+++ ++|.+++. ..+|++++++++++.+.+......
T Consensus 253 I~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~---------------- 314 (452)
T 3n5m_A 253 ISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAYLPLSATAVKREIYEAFKGKGEYEF---------------- 314 (452)
T ss_dssp EEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCS----------------
T ss_pred EEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCCcceEEEEECHHHHHHHhhccCCCC----------------
Confidence 9999987 43221 122223467765 45977732 347999999998877643100000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceE
Q 010538 321 GVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMV 400 (508)
Q Consensus 321 ~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 400 (508)
.......+.|..++++..++++.+.+ +.+.++++++.+++++.|+++.. ..+.+..+.+. +.++
T Consensus 315 --~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~---------g~~~ 378 (452)
T 3n5m_A 315 --FRHINTFGGNPAACALALKNLEIIEN---ENLIERSAQMGSLLLEQLKEEIG--EHPLVGDIRGK---------GLLV 378 (452)
T ss_dssp --CCCCCSSTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHT--TCTTEEEEEES---------SSCE
T ss_pred --ccccCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEEEE---------EEEE
Confidence 00001122355566666677887654 34556667777777777655310 01234333222 5677
Q ss_pred EEEeeCC-CCC-ccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 401 SFNLKRP-DGS-WFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 401 ~~~~~~~-~~~-~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
++.+... ... .++ ...+.+.|.++||.++++..+..+ .++.+
T Consensus 379 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~---------------------------------~~~~i 425 (452)
T 3n5m_A 379 GIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAG---------------------------------YNNIL 425 (452)
T ss_dssp EEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTT---------------------------------CCCEE
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCC---------------------------------CCCEE
Confidence 7776421 111 011 134778888999999987654321 25889
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~ 500 (508)
||++++.+|.+|++++++.|+++++
T Consensus 426 Ri~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 426 TLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 209
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.84 E-value=9.1e-19 Score=184.76 Aligned_cols=365 Identities=11% Similarity=-0.005 Sum_probs=216.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.+.........+...+ ......++.++++++++.+.+ +|+||+|+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~--~v~~~~gG 121 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGH-----GTEASITLAKMIIDRAPKGMS--RVYFGLSG 121 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTC-----CCHHHHHHHHHHHHHSCTTEE--EEEEESSH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccccccc-----CCHHHHHHHHHHHhhCCCCcC--EEEEeCch
Confidence 56778997643 344788888876654321111111111 234567788999999888777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHH----------hcCCeEEEEccCCccCcc--cccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYAL----------SQGAAAFAIDVEEAVDND--GLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~----------~~G~~v~~v~~~~~~~~~--~l~~~~ 173 (508)
++|+..++.++.. .+++.|++....|.........+. .....+..+|.......+ ..
T Consensus 122 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---- 197 (460)
T 3gju_A 122 SDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSM---- 197 (460)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCcccc----
Confidence 9999999887732 356788877666654433322220 011234455532110000 00
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
........++++++ +++.+. ..+++++|++..+++++|.+.+ +++|.++|++ ||+++|+|
T Consensus 198 ~~~~~~~~~~~~le--~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI~D 261 (460)
T 3gju_A 198 SEEQFSQHCADKLE--EMILAE--GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKK------------YDVLLVAD 261 (460)
T ss_dssp CHHHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCEEEEE
T ss_pred ChhHHHHHHHHHHH--HHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEe
Confidence 00000001145666 444210 1246789999999999999777 7788888887 99999999
Q ss_pred cccc-CCCCC--C--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++|+ +|... . +......|++++ +|.+++. -.+|++++++++++.+......+.. .
T Consensus 262 Ev~~g~gr~g~~~~~~~~~~~pdi~t~--sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~-----------------~ 322 (460)
T 3gju_A 262 EVVTGFGRLGTMFGSDHYGIKPDLITI--AKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGS-----------------L 322 (460)
T ss_dssp CTTTTTTTTSSSCHHHHHTCCCSEEEE--CGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCS-----------------C
T ss_pred ccccCCCcccccchHhhcCCCCCeeee--ehhhcCCCCCeEEEEECHHHHHHHhcccccccc-----------------c
Confidence 9987 44322 1 111224677755 4988842 1379999999988776421000000 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLT-VPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSF 402 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 402 (508)
......+.|....++..++++.+.+.. ++.+++....+++.|.+.+.+. +.+..+.+. +.++.+
T Consensus 323 ~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~---------g~~~~~ 387 (460)
T 3gju_A 323 GHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGH------KNVGEVRGD---------GMLAAV 387 (460)
T ss_dssp SCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS------TTEEEEEEE---------TTEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC------CCeEEEeee---------eEEEEE
Confidence 000112345556666677888765532 2344444444444444444444 234443322 678888
Q ss_pred EeeCCCCCc--c-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceE
Q 010538 403 NLKRPDGSW--F-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAI 475 (508)
Q Consensus 403 ~~~~~~~~~--~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 475 (508)
.+....... + ....+.+.|.++||.++++. ..+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------------------~~~~i 429 (460)
T 3gju_A 388 EFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--------------------------------------QGDIL 429 (460)
T ss_dssp EECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--------------------------------------SSCEE
T ss_pred EEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--------------------------------------CCCEE
Confidence 775421110 0 02357788888999988742 14789
Q ss_pred EEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 476 RVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 476 Ris~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
||++++..|.+|+++++++|+++++.+
T Consensus 430 Ri~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 430 GFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
No 210
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.84 E-value=1.3e-20 Score=195.41 Aligned_cols=291 Identities=14% Similarity=0.043 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHc-CCC-----CCCceEE--EcCChHHHHHHHH---hhcCCCCCCeEEEecccccchHHHHHHHHhcCCe
Q 010538 86 VRAAREQVLDYF-NAS-----MKDYKCI--FTSGATAALKLVG---EAFPWSHQSSYMYTMENHNSVLGIREYALSQGAA 154 (508)
Q Consensus 86 ~~~~r~~la~~~-~~~-----~~~~~i~--~t~g~t~al~~~~---~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~ 154 (508)
..++|+.+++++ +.. ++ +|. .|.+++.++.++. .++ .++|+.|+++...|+++... ++..|.+
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~--~i~~~~~~~g~ga~~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~---~~~~g~~ 154 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDG--RIASCQTLGGTGALRIGGDLLNRF-VANCNRIYGPDVGYPNHESI---FAKAGME 154 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTT--CEEEEEESHHHHHHHHHHHHGGGT-SSSCCEEEEESSCCTHHHHH---HHHTTCE
T ss_pred cHHHHHHHHHHHcCCCchhhccC--ceeeeecccchHHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHH---HHHcCCe
Confidence 356788888875 655 55 674 4899999988754 334 57889999998777766544 4456999
Q ss_pred EEEEccCC--ccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcc
Q 010538 155 AFAIDVEE--AVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPER 232 (508)
Q Consensus 155 v~~v~~~~--~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~ 232 (508)
++.+|++. +..+ |+++++ +++++. .+.++++++++++||||.+++.+++.++++
T Consensus 155 ~~~~~~~~~~~~~~---------------d~~~l~--~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~---- 210 (409)
T 4eu1_A 155 LTPYSYYDPATKGL---------------NLAGML--ECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCD---- 210 (409)
T ss_dssp EEEECCEETTTTEE---------------CHHHHH--HHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH----
T ss_pred EEEEEeecCcCCcC---------------cHHHHH--HHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHH----
Confidence 99999842 2233 577777 555321 235678888999999999999887555544
Q ss_pred ccccCCCCCCCeEEEEeccccCCC-CC-----CC---C-CCCCCcEEEEeccccccCCCc--ceEE--EEe-ch----hH
Q 010538 233 ILEISPFSKGRWMVLIDAAKGCVT-QP-----PD---L-SKYPVDFVVMSFYKIFGYPTG--LGAL--IMR-ND----AA 293 (508)
Q Consensus 233 ~~~~~~~~~~g~~vivD~a~~~g~-~~-----~d---~-~~~~~D~~~~S~~K~~g~P~G--~G~l--~~~-~~----~~ 293 (508)
+|+++|+++|+|++++... .+ .. + ...+..+++.|++|.+| ++| +|++ ++. ++ ++
T Consensus 211 -----~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~riG~~~~v~~~~~~~~~l~ 284 (409)
T 4eu1_A 211 -----VIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG-LYGHRCGALHISTASAEEAKRLV 284 (409)
T ss_dssp -----HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS-CGGGCCEEEEEECSSHHHHHHHH
T ss_pred -----HHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc-CccCCceEEEEEeCCHHHHHHHH
Confidence 3445999999999976432 11 11 1 11233478899999998 557 7987 554 44 33
Q ss_pred hhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH-----hcChHHHHHHHHHHHHHHHHH
Q 010538 294 KLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN-----SLTVPAICRHIASLGMYVRKV 368 (508)
Q Consensus 294 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~-----~~g~~~i~~~~~~l~~~l~~~ 368 (508)
+.+.... +....+++.....++..+++... ...++.+++++.++++++.+.
T Consensus 285 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 285 SQLALLI------------------------RPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp HHHHHHH------------------------HHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------hhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222210 01112333444445554554210 112678889999999999999
Q ss_pred HhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChh
Q 010538 369 LLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHS 448 (508)
Q Consensus 369 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s 448 (508)
|+++.. +..+++..+.. +.+++..+ +...+.++++++||.+.+|
T Consensus 341 L~~~g~---~~~~~~~~~~~--------~~~~~~~~--------~~~~~~~ll~~~gv~v~p~----------------- 384 (409)
T 4eu1_A 341 LKACGS---VHDWSHIERQV--------GMMAYTGL--------TREQVELLRSEYHIYMTLN----------------- 384 (409)
T ss_dssp HHHTTC---CSCCHHHHHSC--------SSEEECCC--------CHHHHHHHHHHHCEECCTT-----------------
T ss_pred HHhcCC---CCCcceecCCc--------eEEEEeCC--------CHHHHHHHHHcCCEEEcCC-----------------
Confidence 988620 01144444432 44444322 1223556667789998652
Q ss_pred hhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhh
Q 010538 449 DLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFV 499 (508)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~ 499 (508)
.||+++.. |.+|+++++++|++++
T Consensus 385 --------------------------~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 --------------------------GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp --------------------------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred --------------------------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 38888755 4566999999998765
No 211
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.84 E-value=1.2e-19 Score=199.25 Aligned_cols=323 Identities=15% Similarity=0.083 Sum_probs=216.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCC
Q 010538 83 CDIVRAAREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEE 162 (508)
Q Consensus 83 ~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~ 162 (508)
...+.++++.+|+++|++.. +++++|++.|+..++.++ .++||.|+++...|.|+...+. ..|++++.++.+.
T Consensus 194 ~g~i~eaE~~lA~~fGa~~a---~~v~nGts~An~~ai~al-~~pGD~VLv~r~~H~S~~~~l~---lsGa~pv~v~~~~ 266 (715)
T 3n75_A 194 SGPHKEAEQYIARVFNADRS---YMVTNGTSTANKIVGMYS-APAGSTILIDRNCHKSLTHLMM---MSDVTPIYFRPTR 266 (715)
T ss_dssp BTHHHHHHHHHHHHHTCSEE---EEESSHHHHHHHHHHHHH-CCTTCEEEEESSCCHHHHHHHH---HSCCEEEEECCCB
T ss_pred cHHHHHHHHHHHHHhCCCCc---eEECcHHHHHHHHHHHHh-CCCCCEEEECCCccHHHHHHHH---HcCCEEEEEeccc
Confidence 34578899999999999753 777888889999999998 7899999999999999887644 4699999998753
Q ss_pred cc-CccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCC
Q 010538 163 AV-DNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSK 241 (508)
Q Consensus 163 ~~-~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~ 241 (508)
+. .+.. ....-..|+++++ +++.++ ...+.+++++++++ |++|.+.|+++|.++|++
T Consensus 267 ~~~gi~~------~i~~~~~d~e~Le--~~l~~~-~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~------------ 324 (715)
T 3n75_A 267 NAYGILG------GIPQSEFQHATIA--KRVKET-PNATWPVHAVITNS-TYDGLLYNTDFIKKTLDV------------ 324 (715)
T ss_dssp CTTCCBC------CCCGGGGSHHHHH--HHHHHS-TTCCSCSEEEEESS-CTTSEEECHHHHHHHCCC------------
T ss_pred ccccccc------CcccccCCHHHHH--HHHhhC-cCccCceEEEEECC-CCCCccCCHHHHHHHhCc------------
Confidence 21 1100 0000011577777 665421 11112348888988 999999999999999986
Q ss_pred CCeEEEEeccccCCC--CC----CC-CCC-CCCcEE---EEeccccccCCCcceEEEEechhHh-hhccccccCceEEec
Q 010538 242 GRWMVLIDAAKGCVT--QP----PD-LSK-YPVDFV---VMSFYKIFGYPTGLGALIMRNDAAK-LLKNTYFSGGTVAAS 309 (508)
Q Consensus 242 ~g~~vivD~a~~~g~--~~----~d-~~~-~~~D~~---~~S~~K~~g~P~G~G~l~~~~~~~~-~l~~~~~g~~~~~~~ 309 (508)
++ +++|++|+.+. .+ .+ +.. .++|++ +.|+||++++|++.|+++++++... .+...
T Consensus 325 ~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~---------- 392 (715)
T 3n75_A 325 KS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEA---------- 392 (715)
T ss_dssp SE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHH----------
T ss_pred Cc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHH----------
Confidence 54 79999998653 11 11 111 125765 9999999998877899999876211 11111
Q ss_pred ccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce--EEEecCC
Q 010538 310 IADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV--CTIYGTY 387 (508)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~--~~~~~~~ 387 (508)
...+.+++++++.++++.+|++++....-.++.+++.++++++++.|+++++. .++ ++++++.
T Consensus 393 -------------~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~--~~~~~~~~~~~~ 457 (715)
T 3n75_A 393 -------------YMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTE--SDGWFFDVWQPD 457 (715)
T ss_dssp -------------HHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SSSCCCEESSCS
T ss_pred -------------HHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhh--cccceeeccCcc
Confidence 22345678999999999999998864223567899999999999999887310 001 4555443
Q ss_pred CCCc------cc--C-------------CCCceEEEEeeCCC--C----CccCHHHHHHHHhhCCCeeccCCCCCchHHH
Q 010538 388 TSEV------SY--H-------------DTGSMVSFNLKRPD--G----SWFGYREVEKLASLSGIQLRTGCFCNPGACA 440 (508)
Q Consensus 388 ~~~~------~~--~-------------~~~~~v~~~~~~~~--~----~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~ 440 (508)
.... .+ . --..=+++..++.+ + ..+....+.+.|+++||.+--.
T Consensus 458 ~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~--------- 528 (715)
T 3n75_A 458 HIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKT--------- 528 (715)
T ss_dssp CCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEE---------
T ss_pred cccchhhhccCcccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEec---------
Confidence 1000 00 0 00112344444321 1 1244556888998889986432
Q ss_pred hhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 441 KYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 441 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
....|=+-++..+|.+++++|+++|.+|-+
T Consensus 529 ------------------------------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 529 ------------------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp ------------------------------ETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 145677778888999999999999998764
No 212
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.83 E-value=9.7e-19 Score=184.47 Aligned_cols=353 Identities=10% Similarity=-0.008 Sum_probs=215.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..++ +..+|.+++++.+.+.......+...+ ......++.++++++++.+.+ +|+||+|+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~--~v~~~~gg 120 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKT-----THPAVVELSSLLAEVTPAGFD--RVFYTNSG 120 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSS-----CCHHHHHHHHHHHHHSCTTCC--EEEEESSH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCch
Confidence 66789998653 334788988887655321111111111 234567888999999998888 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHh----------cCCeEEEEccCCc---cC-cccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALS----------QGAAAFAIDVEEA---VD-NDGLSE 171 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~----------~G~~v~~v~~~~~---~~-~~~l~~ 171 (508)
++|+..++..+.. .+++.||+....|.+.......+.. ....+..++.... .. .+.
T Consensus 121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~--- 197 (459)
T 4a6r_A 121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTP--- 197 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCH---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCH---
Confidence 9999999888742 2567888877666654433322210 0113334442110 00 000
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEE
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVL 247 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vi 247 (508)
......++++++ +.+.+. ..+++++|++..+++++|.+.+ +++|.++|++ +|+++|
T Consensus 198 ----~~~~~~~~~~le--~~i~~~--~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~llI 257 (459)
T 4a6r_A 198 ----DEFGVVAARWLE--EKILEI--GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRK------------YDVLLV 257 (459)
T ss_dssp ----HHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------TTCEEE
T ss_pred ----HHHHHHHHHHHH--HHHHHc--CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEE
Confidence 000001145666 444210 1146788888888888899887 8888888887 999999
Q ss_pred Eecccc-CCCCC--C--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhcc---ccccCceEEecccchhhhhh
Q 010538 248 IDAAKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKN---TYFSGGTVAASIADIDFVKR 318 (508)
Q Consensus 248 vD~a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~---~~~g~~~~~~~~~~~~~~~~ 318 (508)
+|++|+ +|... . +......|++++| |.+++. -.+|++++++++++.+.. ...+.
T Consensus 258 ~DEv~~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~--------------- 320 (459)
T 4a6r_A 258 ADEVICGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGF--------------- 320 (459)
T ss_dssp EECTTTTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHH---------------
T ss_pred EeccccCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHHHHHHhhcCCCcccCC---------------
Confidence 999987 43322 1 1112246777655 987733 248999999998776652 11110
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHH-hcccCCCCCceEEEecCCCCCcccCCC
Q 010538 319 RQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIA-SLGMYVRKVL-LSLRHENGADVCTIYGTYTSEVSYHDT 396 (508)
Q Consensus 319 ~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~-~l~~~l~~~L-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 396 (508)
..+.|....++..++++.+.+. .+.++++ ++.+++++.| +.+.. .+.+..+.+.
T Consensus 321 ---------t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~--------- 376 (459)
T 4a6r_A 321 ---------TYSGHPVCAAVAHANVAALRDE---GIVQRVKDDIGPYMQKRWRETFSR---FEHVDDVRGV--------- 376 (459)
T ss_dssp ---------HHCSCHHHHHHHHHHHHHHHHT---CHHHHHHHTHHHHHHHHHHHHHTT---CTTEEEEEEE---------
T ss_pred ---------CCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEEE---------
Confidence 1123455566666678876543 3344555 5555555555 33210 1234444322
Q ss_pred CceEEEEeeCCCCCc--c-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 397 GSMVSFNLKRPDGSW--F-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 397 ~~~v~~~~~~~~~~~--~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
+.++.+.+....... + ....+.+.|.++||.++++
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------------------- 418 (459)
T 4a6r_A 377 GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC-------------------------------------- 418 (459)
T ss_dssp TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE--------------------------------------
T ss_pred EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC--------------------------------------
Confidence 678888775421110 0 0345778888899998873
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
.+++||++++..|.+|+++++++|++.++-+
T Consensus 419 --g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 419 --GDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999999999887654
No 213
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.83 E-value=2e-18 Score=181.43 Aligned_cols=364 Identities=12% Similarity=-0.011 Sum_probs=212.6
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+..+|.+++++.+.........+. .+ ......++.++++++++...+ +|+||+|+
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-~~-----~~~~~~~la~~l~~~~~~~~~--~v~~~~sG 113 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL-GM-----TNVPATQLAETLIDISPKKLT--RVFYSDSG 113 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS-SS-----EEHHHHHHHHHHHHHSCTTEE--EEEEESSH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc-cc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCch
Confidence 6678999865 2334788888876654321111111 11 234567788999999987767 89999999
Q ss_pred HHHHHHHHhhcCC----CC---CCeEEEecccccchHHHHHHHHh----------cCCeEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEAFPW----SH---QSSYMYTMENHNSVLGIREYALS----------QGAAAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~----~~---g~~vl~~~~~h~s~~~~~~~~~~----------~G~~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+..++..+.. .+ ++.|++....|.+.......+.. ....+..+|.......... ..
T Consensus 114 seA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 189 (448)
T 3dod_A 114 AEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESG----DP 189 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSC----CH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCcc----ch
Confidence 9999999887732 22 48888887665443221111100 0112333443221110000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCC-CCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSEC-NFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~-n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
...-..|+++++ ++|.+ ..+++++|++..++ +++|.+.+ +++|.++|++ ||+++|+|+
T Consensus 190 ~~~~~~d~~~le--~~l~~---~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~lI~DE 252 (448)
T 3dod_A 190 DECRDQCLRELA--QLLEE---HHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTT------------YDVLMIVDE 252 (448)
T ss_dssp HHHHHHHHHHHH--HHHHH---HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred hhhhHHHHHHHH--HHHHh---CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHH------------hCCEEEEec
Confidence 000001356666 44421 12467888888888 99998887 8888888887 999999999
Q ss_pred ccc-CCCCC----CCCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccc
Q 010538 251 AKG-CVTQP----PDLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEE 324 (508)
Q Consensus 251 a~~-~g~~~----~d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (508)
+|+ +|... .+......|++++ +|.+++. ..+|++++++++++.+.+....... ..
T Consensus 253 v~~g~g~~g~~~a~~~~~~~~di~t~--sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~-----------------~~ 313 (448)
T 3dod_A 253 VATGFGRTGKMFACEHENVQPDLMAA--GKGITGGYLPIAVTFATEDIYKAFYDDYENLKT-----------------FF 313 (448)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC-----------------CC
T ss_pred cccCCCcccchhhhhhcCCCCCEEEe--cccccCCcCceEEEEECHHHHHHhhhccccCCc-----------------cc
Confidence 987 43221 1122224576655 5988732 1479999999988776651100000 00
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 325 LFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 325 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
.....+.+...+++..++++.+.+ +.+.++++++.+++++.|.++.. .+.+....+ .+.++++.+
T Consensus 314 ~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~---------~g~~~~~~~ 378 (448)
T 3dod_A 314 HGHSYTGNQLGCAVALENLALFES---ENIVEQVAEKSKKLHFLLQDLHA---LPHVGDIRQ---------LGFMCGAEL 378 (448)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHTT---STTEEEEEE---------ETTEEEEEE
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEe---------eeEEEEEEE
Confidence 001123355566666778887654 34556666666666666654210 122332221 167888887
Q ss_pred eCCCCCc--cC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEE
Q 010538 405 KRPDGSW--FG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRV 477 (508)
Q Consensus 405 ~~~~~~~--~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRi 477 (508)
....... +. ...+.+.|.++||.++++ .+.+|+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----------------------------------------~~~iRi 418 (448)
T 3dod_A 379 VRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL----------------------------------------GDVIAF 418 (448)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----------------------------------------TTEEEE
T ss_pred ccCcccccccchhhHHHHHHHHHHHHCCcEEecc----------------------------------------CCEEEE
Confidence 6421110 00 235778888899998763 368999
Q ss_pred ecCCCCCHHHHHHHHHhhhhhhhhhhhc
Q 010538 478 SFGYMSTFEDAKVNRCSSFDFVNFSQFL 505 (508)
Q Consensus 478 s~~~~~t~eev~~l~~~~~~~~~~~~~~ 505 (508)
++++..|.+|++++++.|+++++.+..+
T Consensus 419 ~~~~~~t~e~i~~~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 419 LPPLASTAEELSEMVAIMKQAIHEVTSL 446 (448)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998776554
No 214
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.82 E-value=6.5e-19 Score=184.15 Aligned_cols=353 Identities=12% Similarity=0.022 Sum_probs=208.8
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|+.++. ..+|.+++++.+.... .. .. .++ .....+++++++++++ .++ +|+||+|+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~--~~-~~~-----~~~~~~l~~~la~~~~-~~~--~v~~~~sG 120 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN-GV--LY-GTP-----TALEVKFAKMLKEAMP-ALD--KVRFVNSG 120 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHH-CS--CC-SSC-----CHHHHHHHHHHHHHCT-TCS--EEEEESSH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh-Cc--CC-CCC-----CHHHHHHHHHHHHhCC-CCC--EEEEeCch
Confidence 677899987653 2488888887665432 11 11 111 2345667888999987 566 89999999
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEE--ccCCccCccccccccccccccccchhhhhcC
Q 010538 113 TAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAI--DVEEAVDNDGLSESLVTSTKISLLPIQRRKG 189 (508)
Q Consensus 113 t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v--~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~~ 189 (508)
|+|+++++..+.. .++++|++....|.........+ .|..+..+ |...........+....+ -.|+++++
T Consensus 121 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~le-- 193 (434)
T 3l44_A 121 TEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVA--AGSGPSTLGTPDSAGVPQSIAQEVITVP---FNNVETLK-- 193 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC---------CCCBSSTTCCHHHHTTEEEEC---TTCHHHHH--
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhh--cCCcccccCCCCcCCCCCcCCCceEecC---cccHHHHH--
Confidence 9999998877632 35678888766554432211110 11111111 110000000000000000 00456666
Q ss_pred CCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccC---CCCC-CCC
Q 010538 190 ASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC---VTQP-PDL 261 (508)
Q Consensus 190 ~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~---g~~~-~d~ 261 (508)
+++.+ ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++|+. |... .+.
T Consensus 194 ~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~illI~DEv~~g~~~g~~~~~~~ 258 (434)
T 3l44_A 194 EALDK---WGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHE------------AGALVIYDEVITAFRFMYGGAQDL 258 (434)
T ss_dssp HHHHH---HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHT------------TTCEEEEECTTTTTTSSSSCHHHH
T ss_pred HHHHh---CCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHH------------cCCEEEEeccccceeccccHHHHH
Confidence 44421 1246789999988889999998 8899999997 9999999999973 2110 111
Q ss_pred CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHH
Q 010538 262 SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRH 341 (508)
Q Consensus 262 ~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~ 341 (508)
.....|+++ ++|.++++-.+|++++++++++.+.+.-. .......+.|...+++..+
T Consensus 259 ~~~~~di~t--~sK~~~~G~~iG~~~~~~~i~~~~~~~~~---------------------~~~~~t~~~~~~a~aaa~a 315 (434)
T 3l44_A 259 LGVTPDLTA--LGKVIGGGLPIGAYGGKKEIMEQVAPLGP---------------------AYQAGTMAGNPASMASGIA 315 (434)
T ss_dssp HTCCCSEEE--EEGGGGTTSSCEEEEECHHHHTTBTTTSS---------------------BCCCCTTTTCHHHHHHHHH
T ss_pred cCCCCCeee--hhhhhcCCcCeeeEEEcHHHHHhhccCCC---------------------cccCCCCCcCHHHHHHHHH
Confidence 122356665 55988743348999999988776654200 0000112345566666777
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC---------cc
Q 010538 342 GFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS---------WF 412 (508)
Q Consensus 342 al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~ 412 (508)
+++.+.+ +++.++++++.+++++.|+++... .+.+..... .+.++++.+.+.... ..
T Consensus 316 al~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (434)
T 3l44_A 316 CLEVLQQ---EGLYEKLDELGATLEKGILEQAAK--HNIDITLNR---------LKGALTVYFTTNTIEDYDAAQDTDGE 381 (434)
T ss_dssp HHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEE---------ETTEEEEEESSSCCCSHHHHHHSCHH
T ss_pred HHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEEe---------eccEEEEEEecCcccchhhccccCHH
Confidence 7887644 456677778888888877664100 011111111 267888887532110 00
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
....+.+.|.++||.++++. .+.+|++ +..|.+|+++++
T Consensus 382 ~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~rl~--~~~t~e~i~~~l 420 (434)
T 3l44_A 382 MFGKFFKLMLQEGVNLAPSK---------------------------------------YEAWFLT--TEHTKEDIEYTI 420 (434)
T ss_dssp HHHHHHHHHHHTTEECCSST---------------------------------------TCCEECC--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEeecC---------------------------------------CCcEEEe--cccCHHHHHHHH
Confidence 11347788888999998752 3468886 467999999999
Q ss_pred Hhhhhhhhhhh
Q 010538 493 CSSFDFVNFSQ 503 (508)
Q Consensus 493 ~~~~~~~~~~~ 503 (508)
++|+++++.++
T Consensus 421 ~~l~~~l~~~~ 431 (434)
T 3l44_A 421 EAVGRAFAALA 431 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 215
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.82 E-value=7.9e-19 Score=179.50 Aligned_cols=347 Identities=13% Similarity=0.056 Sum_probs=224.0
Q ss_pred CeeeeCCCCCCCCHHHHHHHHHHhhcccc--CCCCCccchhhhhhHHHHH-HHHHHHHHcCCCCCCceE-EEcCChHHHH
Q 010538 41 TVYLDHAGATLYSELQMEAIFRDFTTNVY--GNPHSQSDISLATCDIVRA-AREQVLDYFNASMKDYKC-IFTSGATAAL 116 (508)
Q Consensus 41 ~iyld~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~r~~la~~~~~~~~~~~i-~~t~g~t~al 116 (508)
.|-|= ++-...++.|++++ ...+.+.| +.|+..|+.|.+..+.+|. +++++.++||++..++-| +=..|++.|+
T Consensus 56 ~ieLI-ASEN~~S~aV~~a~-gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN 133 (490)
T 3ou5_A 56 GLELI-ASENFCSRAALEAL-GSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPAN 133 (490)
T ss_dssp SEECC-TTCCCCCHHHHHHH-TSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHH
T ss_pred CceEe-cCCCcCCHHHHHHh-cCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHH
Confidence 44443 66777899998886 44555655 5788888888777777776 788899999998763212 2235777899
Q ss_pred HHHHhhcCCCCCCeEEEecccccchHHHH-----HHHHhcCCeEEEE--ccCC-ccCccccccccccccccccchhhhhc
Q 010538 117 KLVGEAFPWSHQSSYMYTMENHNSVLGIR-----EYALSQGAAAFAI--DVEE-AVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 117 ~~~~~~l~~~~g~~vl~~~~~h~s~~~~~-----~~~~~~G~~v~~v--~~~~-~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
..++.++ .+|||+|+..+..|.+.+.-- ......|.-...+ +++. ++.+ |.++++
T Consensus 134 ~avy~Al-l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~I---------------Dyd~~~- 196 (490)
T 3ou5_A 134 LAVYTAL-LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLI---------------DYNQLA- 196 (490)
T ss_dssp HHHHHHH-CC-CCCEECBC----------------------------CBCEETTTTEE---------------CHHHHH-
T ss_pred HHHHHHH-cCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcc---------------cHHHHH-
Confidence 9999999 799999998887766543211 1111123222333 3342 3444 577776
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEeccccC-----CCCCCCCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAAKGC-----VTQPPDLSK 263 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~-----g~~~~d~~~ 263 (508)
+..+ ..++++|++-. +..-..+|.+++.++|++ .|+++++|.+|-. |..|-++..
T Consensus 197 -~~A~-----~~kPklIi~G~--SaY~r~id~~~~reIAd~------------vGA~Lm~DmAHiaGLVA~g~~psP~~~ 256 (490)
T 3ou5_A 197 -LTAR-----LFRPRLIIAGT--SAYARLIDYARMREVCDE------------VKAHLLADMAHISGLVAAKVIPSPFKH 256 (490)
T ss_dssp -HHHH-----HHCCSEEEECC--SSCCSCCCHHHHHHHHHH------------HTCEEEEECGGGHHHHHTTSSCCGGGT
T ss_pred -HHHh-----hcCCCeEEECC--ccCccccCHHHHHHHHhh------------cccEEEechhhhhhhhcccccCCcccc
Confidence 3322 34678888755 334578899999999998 8999999999964 555555553
Q ss_pred CCCcEEEEeccccccCCCcceEEEEechh---------------HhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 264 YPVDFVVMSFYKIFGYPTGLGALIMRNDA---------------AKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 264 ~~~D~~~~S~~K~~g~P~G~G~l~~~~~~---------------~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
+|++++|+||+|.||+| |+++.+++. .+++...+|.|. -
T Consensus 257 --ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~-----------------------q 310 (490)
T 3ou5_A 257 --ADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL-----------------------Q 310 (490)
T ss_dssp --CSEEEEESSSTTCSCSC-EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTT-----------------------C
T ss_pred --ceEEeccccccccCCCc-eEEEeccccccccccccchhHHHHHHHHHhhcCccc-----------------------c
Confidence 89999999998888997 888888742 223333333222 2
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
|.|....+++.+.++....+...+...+++.++++.|.+.|.+. |+++++..+. .+++.+++....
T Consensus 311 ggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-------G~~vvsGgTd-------nHlvLvDl~~~g 376 (490)
T 3ou5_A 311 GGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-------GYSLVSGGTD-------NHLVLVDLRPKG 376 (490)
T ss_dssp SSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-------TCEEGGGSCS-------SSEEEEECGGGT
T ss_pred ccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-------CCeeecCCCC-------ceEEEEeccccC
Confidence 56677788888888886555457899999999999999999886 8999976554 788888875432
Q ss_pred CCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC----CC
Q 010538 409 GSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM----ST 484 (508)
Q Consensus 409 ~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~----~t 484 (508)
++..+..+.|++.||.+.--..+. |+ ....++.|||+.... -.
T Consensus 377 ---~tG~~ae~~Le~agItvNkN~iP~--------------------------D~----sp~~~SGiRiGTpa~TtRG~~ 423 (490)
T 3ou5_A 377 ---LDGARAERVLELVSITANKNTCPG--------------------------DR----SAITPGGLRLGAPALTSRQFR 423 (490)
T ss_dssp ---CCHHHHHHHHHHTTEECEEECCTT--------------------------CC----CSSSCSEEEEESHHHHHTTCC
T ss_pred ---CCHHHHHHHHHHcCcEECCCCCCC--------------------------CC----CCCCCCeeEECCHHHHhCCCC
Confidence 455678999999999975322111 10 011367899997543 47
Q ss_pred HHHHHHHHHhhhhhh
Q 010538 485 FEDAKVNRCSSFDFV 499 (508)
Q Consensus 485 ~eev~~l~~~~~~~~ 499 (508)
++|++.+.++|.+.+
T Consensus 424 e~dm~~IA~~I~~~l 438 (490)
T 3ou5_A 424 EDDFRRVVDFIDEGV 438 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999988887655
No 216
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.81 E-value=2.6e-19 Score=187.26 Aligned_cols=310 Identities=14% Similarity=0.081 Sum_probs=198.8
Q ss_pred HHHHhhccCCCCCeeeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEE
Q 010538 29 IRATEFKRLENGTVYLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIF 108 (508)
Q Consensus 29 ~r~~~f~~~~~~~iyld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~ 108 (508)
++. +|..+ +.....+ .+.+++++.+........++...+..+ ....+++++.+++++|++....++++
T Consensus 22 ~~~-~~~~~-~~~~~~n-------~~~vl~A~~~~~~~~~~~~~~~g~~y~---~~~~~~l~~~la~~~g~~~~~~~i~~ 89 (431)
T 3ht4_A 22 ITE-VHKRA-DEVIESN-------QFRVLESFGKHKISDSHFIPTTGYGYD---DIGRDTLEKVYADVFGAEAGLVRPQI 89 (431)
T ss_dssp THH-HHHHH-HHHHHHH-------HHHHHHHHHHTTCCGGGSCCCCTTCCS---CHHHHHHHHHHHHHTTCSEECCBTTS
T ss_pred HHH-HHHHH-HHHHHHH-------HHHHHHHHHHhchhhhhcCCCCCCCCC---hhhHHHHHHHHHHHhCCCccccccee
Confidence 344 56555 3444444 356777665533222222333333322 12367889999999999754101225
Q ss_pred cCChHHHHHHHHhhcCCCCCCeEEEec-ccccchHHHH-------HHHHhcCCeEEEEccCCccCccccccccccccccc
Q 010538 109 TSGATAALKLVGEAFPWSHQSSYMYTM-ENHNSVLGIR-------EYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKIS 180 (508)
Q Consensus 109 t~g~t~al~~~~~~l~~~~g~~vl~~~-~~h~s~~~~~-------~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~ 180 (508)
+ |+|+|+.+++.++ .++|++|+++. ..|+++...+ ..++..|++++.+|.+.++.+
T Consensus 90 ~-sGt~Ai~~al~al-~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~-------------- 153 (431)
T 3ht4_A 90 I-SGTHAISTALFGI-LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLV-------------- 153 (431)
T ss_dssp C-SHHHHHHHHHHTT-CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSB--------------
T ss_pred e-CHHHHHHHHHHHh-CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCc--------------
Confidence 5 6689999999998 68899999998 7888777655 334557999999999776655
Q ss_pred cchhhhhcCCCCCCCCCCCCCceEEEEeC-CCCCCccccCHHHHHHHHcCCccccccCCCCC--CCeEEEEeccccCCCC
Q 010538 181 LLPIQRRKGASFPERDPAGDAYNLFAFPS-ECNFSGSRFNLDLINIMKKNPERILEISPFSK--GRWMVLIDAAKGCVTQ 257 (508)
Q Consensus 181 ~d~~~l~~~~~l~~~~~~~~~t~lv~~~~-~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~--~g~~vivD~a~~~g~~ 257 (508)
|+++++ +++ +++|++|++++ ++||+|...+++.+.++++ +|++ +|+++++|++++.+..
T Consensus 154 -d~e~l~--~~l------~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~---------la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 154 -DFEAVA--AAI------HSNTKMIGIQRSKGYATRPSFTISQIKEMIA---------FVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp -CHHHHH--HHC------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHH---------HHHHHCTTCEEEEECTTCTTSS
T ss_pred -CHHHHH--hhc------CCCCeEEEEECCCCCCCCCcCCHHHHHHHHH---------HHHhhCCCCEEEEeCCChhhcc
Confidence 688898 555 46899999995 7777777776666666655 4556 8999999999998765
Q ss_pred CCCCCCCCCcEEEEeccccccC---CCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChh
Q 010538 258 PPDLSKYPVDFVVMSFYKIFGY---PTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFL 334 (508)
Q Consensus 258 ~~d~~~~~~D~~~~S~~K~~g~---P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 334 (508)
..+....++|++++|+||++|+ |.| |++++++++++.++......+ .....+. ++.
T Consensus 216 ~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~-------------------~g~~~~~-~~~ 274 (431)
T 3ht4_A 216 EQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPG-------------------IGAEAGA-SLY 274 (431)
T ss_dssp SCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTT-------------------TTTSCSC-CCS
T ss_pred CCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCC-------------------cccccCc-cHH
Confidence 4455556899999999998664 677 999999998887765321110 0001111 111
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCCccCH
Q 010538 335 SIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGY 414 (508)
Q Consensus 335 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 414 (508)
....+..+++. ...+.++..+.++++.+.|+++ +++++..... .+...++.+.+++.+ ..
T Consensus 275 ~~~~~~~~l~~-----~~~~~~~~~~~a~~l~~~L~~~-------g~~v~p~~~~----~~~~li~~i~l~~~~----~~ 334 (431)
T 3ht4_A 275 SLQEMYQGFFL-----APHVAGQALKGAIFTAAFLEKL-------GMNTSPAWNA----PRTDLIQSVQFDDKD----RM 334 (431)
T ss_dssp CSHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-------TCCEESCTTS----CCSSSCCEEECCCHH----HH
T ss_pred HHHHHHhHhhh-----HHHHHHHHHHHHHHHHHHHHhC-------cCEecCCCCC----CCccEEEEEEeCCHH----HH
Confidence 11222334443 2556677888899999999887 4555432221 133458888886321 12
Q ss_pred HHHHHHHhhCC
Q 010538 415 REVEKLASLSG 425 (508)
Q Consensus 415 ~~l~~~L~~~g 425 (508)
..+.+.|++..
T Consensus 335 ~~~~~~l~~~~ 345 (431)
T 3ht4_A 335 IAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 34666776653
No 217
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.81 E-value=4.4e-18 Score=180.19 Aligned_cols=357 Identities=10% Similarity=0.009 Sum_probs=219.3
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.++...-.+..+...+ ......++.++++++++.+.+ +|+|++|+
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~-----~~~~~~~lae~l~~~~~~~~~--~v~~~~sG 125 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKT-----THVPAIALAQKLAELAPGDLN--HVFFAGGG 125 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSE-----ECHHHHHHHHHHHHHSCTTEE--EEEEESSH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccccc-----CCHHHHHHHHHHHHhCCCCCC--EEEEeCCH
Confidence 67789998653 445789998886655321111111111 234567788999999987777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHh---------cCCeEEEEccCCccC-cccccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALS---------QGAAAFAIDVEEAVD-NDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~---------~G~~v~~v~~~~~~~-~~~l~~~~~~ 175 (508)
++|+..++..+.. .+++.||+....|.........+.. ....+..+|...... .+.. ..
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~----~~ 201 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDM----DP 201 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTC----CH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCccc----CH
Confidence 9999998887732 2466777776555443322221100 011344454321000 0000 00
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
......++++++ +.+.+. ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++
T Consensus 202 ~~~~~~~~~~le--~~i~~~--~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~------------~gillI~DEv 265 (472)
T 3hmu_A 202 EEFGLARARELE--EAILEL--GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDK------------YDILLIADEV 265 (472)
T ss_dssp HHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHH------------TTCEEEEECT
T ss_pred HHHHHHHHHHHH--HHHHhc--CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEEcc
Confidence 000001145555 443210 1246789999999999999998 8888888887 9999999999
Q ss_pred cc-CCCCC--C--CCCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|+ +|... . +......|++++| |.+++. -.+|++++++++++.+.+..+..
T Consensus 266 ~~gfgr~G~~~a~~~~~v~pdi~t~s--K~l~gg~~plG~v~~~~~i~~~~~~~~~~~---------------------- 321 (472)
T 3hmu_A 266 ICGFGRTGNWFGTQTMGIRPHIMTIA--KGLSSGYAPIGGSIVCDEVAHVIGKDEFNH---------------------- 321 (472)
T ss_dssp TTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTTTSSCCEEEEEEHHHHHHHTTSCBCC----------------------
T ss_pred ccCCcccCccchhHHhCCCCceeeec--hhhhcCCcceEEEEECHHHHHhcccCCccc----------------------
Confidence 97 44322 1 1112246888665 988743 13799999999887763210000
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHH-HHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIA-SLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~-~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
....+.|....++..++++.+.+ +.+.++++ ++.+++++.|+++.. .+.+..+.+ .+.++.+.+
T Consensus 322 ~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~vr~---------~G~~~~i~~ 386 (472)
T 3hmu_A 322 GYTYSGHPVAAAVALENLRILEE---ENILDHVRNVAAPYLKEKWEALTD---HPLVGEAKI---------VGMMASIAL 386 (472)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHTHHHHHHHHHHGGGG---STTEEEEEE---------ETTEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEe---------cCceEEEEE
Confidence 00122345566666778887655 35667777 788888888866521 123433322 167888887
Q ss_pred eCCCCC--cc------CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 405 KRPDGS--WF------GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 405 ~~~~~~--~~------~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
...... .+ ....+.+.|.++||.++++ .+++|
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iR 426 (472)
T 3hmu_A 387 TPNKASRAKFASEPGTIGYICRERCFANNLIMRHV----------------------------------------GDRMI 426 (472)
T ss_dssp CSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE----------------------------------------TTEEE
T ss_pred ecCccccccccchhHHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEE
Confidence 532110 00 0345778888899998763 26899
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
|++++..|.+|+++++++|+++++-
T Consensus 427 i~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 427 ISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 218
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.80 E-value=2.6e-17 Score=174.49 Aligned_cols=359 Identities=9% Similarity=0.020 Sum_probs=219.0
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +..+|.+++++.+......+..+. . .......++.++++++++.+.+ .|+|++|+
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~-~-----~~~~~~~~la~~l~~~~~~~~~--~v~~~~sG 123 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW-Y-----MATSPAARLAEKIATLTPGDLN--RIFFTTGG 123 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT-T-----CBCHHHHHHHHHHHTTSSTTCC--EEEEESSH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC-c-----cCCHHHHHHHHHHHhcCCCCcC--EEEEeCch
Confidence 56778997543 445888988887655321111111 1 1234567788999999987777 89999999
Q ss_pred HHHHHHHHhhcCC-------CCCCeEEEecccccchHHHHHHHHhcC------------CeEEEEccCCc-cCccccccc
Q 010538 113 TAALKLVGEAFPW-------SHQSSYMYTMENHNSVLGIREYALSQG------------AAAFAIDVEEA-VDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~l~~-------~~g~~vl~~~~~h~s~~~~~~~~~~~G------------~~v~~v~~~~~-~~~~~l~~~ 172 (508)
++|+..++..+.. .+++.||+....|.........+ .| ..+..++.... ...+.-
T Consensus 124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--- 198 (476)
T 3i5t_A 124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC--TGRTGNWPNFDIAQDRISFLSSPNPRHAGNRS--- 198 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHT--CCCGGGCTTSCCCCTTEEEECCCCGGGCTTSC---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccc--cCChhhccccCCCCCCcEEeCCCcccccCCCc---
Confidence 9999998887632 34567777765555443222211 11 11223332110 000000
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
........+++++ +.+.+. ..+++++|++..+++++|.+.+ +++|.++|++ +|+++|+
T Consensus 199 --~~~~~~~~~~~le--~~i~~~--~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~------------~gillI~ 260 (476)
T 3i5t_A 199 --QEAFLDDLVQEFE--DRIESL--GPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEK------------HDILYIS 260 (476)
T ss_dssp --HHHHHHHHHHHHH--HHHHHH--CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------TTCEEEE
T ss_pred --hHHHHHHHHHHHH--HHHHhc--CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHH------------cCCEEEE
Confidence 0000000045555 443210 1146799999999999998776 7788888887 9999999
Q ss_pred ecccc-CCCCC--C--C-CCCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccC
Q 010538 249 DAAKG-CVTQP--P--D-LSKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQG 321 (508)
Q Consensus 249 D~a~~-~g~~~--~--d-~~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (508)
|++|+ +|... . . ......|++++| |.+++. ..+|++++++++.+.+.+.......
T Consensus 261 DEv~~g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~---------------- 322 (476)
T 3i5t_A 261 DEVVTGFGRCGEWFASEKVFGVVPDIITFA--KGVTSGYVPLGGLAISEAVLARISGENAKGSW---------------- 322 (476)
T ss_dssp ECTTTTTTTTSSSCHHHHTTCCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTSGGGCTTCE----------------
T ss_pred EecccCCccccCceeeecccCCCcchhhhh--hhhcCCCcCeEEEEECHHHHHHHhcCCccccc----------------
Confidence 99987 43221 1 1 222346887655 988742 2379999999988766543100000
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 322 VEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 322 ~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
-......+.|...+++..++++.+.+ +.+.++++++.+++++.|+++. ..+.+..+.+. +.++.
T Consensus 323 -~~~~~t~~~np~a~aAa~aaL~~~~~---~~~~~~~~~~~~~l~~~L~~l~---~~~~v~~v~~~---------G~~~~ 386 (476)
T 3i5t_A 323 -FTNGYTYSNQPVACAAALANIELMER---EGIVDQAREMADYFAAALASLR---DLPGVAETRSV---------GLVGC 386 (476)
T ss_dssp -ECCCCTTTTCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHTTT---TSTTEEEEEEE---------TTEEE
T ss_pred -ccccCCCCcCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHh---cCCCeEEEEec---------CceeE
Confidence 00001123455666677778887655 4567888888899998887652 11334433222 67778
Q ss_pred EEeeCCCCCc--c-----CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDGSW--F-----GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~~~--~-----~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+....... + ....+.+.|.++||.+++. .+.
T Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~ 426 (476)
T 3i5t_A 387 VQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL----------------------------------------GDL 426 (476)
T ss_dssp EEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE----------------------------------------TTE
T ss_pred EEEecCccccccccchhHHHHHHHHHHHHCCCEEEec----------------------------------------CCE
Confidence 8775421110 0 0235777888899998762 368
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+||++.+..|.+|+++++++|+++++-+
T Consensus 427 iRi~p~l~~t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 427 CVISPPLIISRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887553
No 219
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.80 E-value=3.3e-19 Score=186.01 Aligned_cols=330 Identities=14% Similarity=0.107 Sum_probs=205.6
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..++. ..+|.+++++.+... .. .+..+ ......++.++++++++ +++ +|+|++|+
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~---~~~~~-----~~~~~~~la~~l~~~~~-~~~--~v~~~~gg 117 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAME-KG---TSFGA-----PCALENVLAEMVNDAVP-SIE--MVRFVNSG 117 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT-TC---SCCSS-----CCHHHHHHHHHHHHHST-TCS--EEEEESSH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHH-hC---CCcCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCH
Confidence 567789986643 238888888766542 21 11111 23456778889999998 667 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHH----HHhcC------------CeEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREY----ALSQG------------AAAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~----~~~~G------------~~v~~v~~~~~~~~~~l~~~~~ 174 (508)
++|+.+++.... ..+++.||+....|.+ ....... ....+ ..+..+|.+
T Consensus 118 sea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 184 (427)
T 3fq8_A 118 TEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN------------- 184 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------------
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------------
Confidence 999999884321 1344566665544433 2211000 00000 012222221
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++.+ ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|+
T Consensus 185 -------d~~~le--~~l~~---~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DE 240 (427)
T 3fq8_A 185 -------DLEAVK--ALFAE---NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLE------------HDALLVFDE 240 (427)
T ss_dssp -------CHHHHH--HHHHH---STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred -------CHHHHH--HHHHh---CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEec
Confidence 356666 44422 1347899999999999999999 9999999997 999999999
Q ss_pred cccCCCCC-----CCCCCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 251 AKGCVTQP-----PDLSKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 251 a~~~g~~~-----~d~~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
+|+ |... .+......|+.+ ++|.++ + | +|++++++++++.+.+.-
T Consensus 241 v~~-g~~~g~~~~~~~~~~~~di~t--~sK~~~-~-G~~~G~~~~~~~~~~~~~~~~----------------------- 292 (427)
T 3fq8_A 241 VIT-GFRIAYGGVQEKFGVTPDLTT--LGKIIG-G-GLPVGAYGGKREIMQLVAPAG----------------------- 292 (427)
T ss_dssp TTT-BTTTBTTHHHHHTTCCCSEEE--ECGGGG-T-TSSCEEEEECHHHHTTBTTTS-----------------------
T ss_pred ccc-ccccCcchhhHhcCCCCChhh--hhhhhh-C-CcceEEEEEcHHHHHhhccCC-----------------------
Confidence 997 2210 111222457654 459988 5 5 899999998877665420
Q ss_pred ccccCC--CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDG--TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~g--t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+ +.|...+++..++++.+.+ +.+.++++++.+++++.|+++.... ++... ... .+.+++
T Consensus 293 ~~~~~~t~~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~-~~~-------~g~~~~ 358 (427)
T 3fq8_A 293 PMYQAGTLSGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDGLLAIAQET---GHAAC-GGQ-------VSGMFG 358 (427)
T ss_dssp SBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHT---TCCCE-EEE-------ETTEEE
T ss_pred CccccCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhC---CCCeE-EEE-------eeeEEE
Confidence 001112 2366667777777877644 4566777888888888776641000 01000 111 267888
Q ss_pred EEeeCCCCC---------ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 402 FNLKRPDGS---------WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 402 ~~~~~~~~~---------~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
+.+.+.... ......+.+.|.++||.++++. .
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~---------------------------------------~ 399 (427)
T 3fq8_A 359 FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ---------------------------------------F 399 (427)
T ss_dssp EESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------------------------T
T ss_pred EEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC---------------------------------------C
Confidence 887643211 0012357788888999988742 1
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~~~ 500 (508)
.|++++..+|.+|+++++++|+++++
T Consensus 400 --~r~~~~~~~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 400 --EAGFTSLAHTEEDIDATLAAARTVMS 425 (427)
T ss_dssp --SCEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred --CCEEeeCcCCHHHHHHHHHHHHHHHH
Confidence 25666778899999999999998765
No 220
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.80 E-value=2.1e-17 Score=173.96 Aligned_cols=355 Identities=10% Similarity=-0.008 Sum_probs=212.8
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|+|..++ +..+|.+++++.+... .. ..... .........++.++++++++.. .+ +|+||+|
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~-~~-~~~~~----~~~~~~~~~~la~~l~~~~~~~~~~--~v~~~~s 130 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVG-DF-THTCF----MVTPYEGYVAVCEQLNRLTPVRGDK--RSALFNS 130 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHT-TC-SCCTT----TTSCCHHHHHHHHHHHHHSSCCSSE--EEEEESS
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHH-hc-ccccC----CccCCHHHHHHHHHHHHhCCcCCCC--EEEEeCc
Confidence 66789998653 3348888888766543 21 11110 1112345667888999998754 35 8999999
Q ss_pred hHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHh-----------cCCeEEEEccCCccC-----ccccccccc
Q 010538 112 ATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALS-----------QGAAAFAIDVEEAVD-----NDGLSESLV 174 (508)
Q Consensus 112 ~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~-----------~G~~v~~v~~~~~~~-----~~~l~~~~~ 174 (508)
+|+|+.+++..... .+++.|++....|.+.......+.. ....+..+|...... .+.
T Consensus 131 GseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------ 204 (451)
T 3oks_A 131 GSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKEL------ 204 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTT------
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccccc------
Confidence 99999998876532 3557788776666554433222210 012456666541100 000
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
......+++.++ +.|++ ....+++++|++..+++..|.+.+ +++|.++|++ ||+++|+|+
T Consensus 205 -~~~~~~~~~~~~--~~l~~-~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~------------~g~~lI~DE 268 (451)
T 3oks_A 205 -ATDGELAAKRAI--TVIDK-QIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRK------------NDVVFIADE 268 (451)
T ss_dssp -TTCHHHHHHHHH--HHHHH-HTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------TTCEEEEEC
T ss_pred -chhhHHHHHHHH--HHHHh-hcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEEe
Confidence 000000122222 11110 001246788888888778888887 8888888887 999999999
Q ss_pred ccc-CCCCC--C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 251 AKG-CVTQP--P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 251 a~~-~g~~~--~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+|+ +|... . +......|++ |++|.+++.-.+|++++++++++.+.+...+.
T Consensus 269 v~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~---------------------- 324 (451)
T 3oks_A 269 VQTGFARTGAMFACEHEGIDPDLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGG---------------------- 324 (451)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCC----------------------
T ss_pred cccCCCccccchhhhhcCCCCCee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCC----------------------
Confidence 987 33221 1 1112245776 55598883123899999999877665432111
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
..+.|....++..++++.+.+. .+.++.+++.+++++.|.++.. ..+.+..+.. .+.++++.+.
T Consensus 325 --t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~---------~G~~~~~~~~ 388 (451)
T 3oks_A 325 --TYGGNPIACAAALATIETIESE---GLVARAQQIEKIMKDRLGRLQA--EDDRIGDVRG---------RGAMIAMELV 388 (451)
T ss_dssp --SSSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEEE---------ETTEEEEEEB
T ss_pred --CCCCCHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEEE---------eeEEEEEEEe
Confidence 1234555566666778876553 4556666667777666654310 0023333222 1678888875
Q ss_pred CCCC---CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCC
Q 010538 406 RPDG---SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYM 482 (508)
Q Consensus 406 ~~~~---~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~ 482 (508)
+... .......+.+.|.++||.++++.. ..+.+|+++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~ 431 (451)
T 3oks_A 389 KAGTTEPDADLTKALCAGAHAAGVIVLSCGT-------------------------------------YGNVVRFLPPLS 431 (451)
T ss_dssp STTSCCBCHHHHHHHHHHHHHTTEECEEECT-------------------------------------TSCEEEECCCTT
T ss_pred cCccCCCCHHHHHHHHHHHHhCCcEEecCCC-------------------------------------CCCEEEEECCCC
Confidence 3110 111234578888899999887421 146899999999
Q ss_pred CCHHHHHHHHHhhhhhhh
Q 010538 483 STFEDAKVNRCSSFDFVN 500 (508)
Q Consensus 483 ~t~eev~~l~~~~~~~~~ 500 (508)
.|.+|+++++++|+++++
T Consensus 432 ~t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 432 IGDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999988764
No 221
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.80 E-value=1.4e-17 Score=175.39 Aligned_cols=356 Identities=10% Similarity=0.044 Sum_probs=214.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++.-|+|..++ +..+|.+++++.+.+. ........ ........+++++++++++.+ .+ +|+||+|
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~-~~~~~~~~-----~~~~~~~~~la~~l~~~~~~~~~~--~v~~~~s 133 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQAT-HFTHTCFM-----VTPYEQYVQVAELLNALTPGDHDK--RTALFNS 133 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH-HCSCCTTT-----TSCCHHHHHHHHHHHHHSSCSSCE--EEEEESS
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHH-hccccccC-----cCCCHHHHHHHHHHHHhCCCCCCc--EEEEeCc
Confidence 66789998653 3348888888766543 22111111 112345677889999999865 45 8999999
Q ss_pred hHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHh-----------cCCeEEEEccCCcc-Cccccccccccccc
Q 010538 112 ATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALS-----------QGAAAFAIDVEEAV-DNDGLSESLVTSTK 178 (508)
Q Consensus 112 ~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~-----------~G~~v~~v~~~~~~-~~~~l~~~~~~~~~ 178 (508)
+|+|+++++..... .+++.|++....|.........+.. ....+..+|..... +.... .....
T Consensus 134 GseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~ 209 (453)
T 4ffc_A 134 GAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGL----TGEEA 209 (453)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTC----CHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcccc----chHHH
Confidence 99999998876522 3557787776665544333222210 01145556553110 00000 00011
Q ss_pred cccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-
Q 010538 179 ISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG- 253 (508)
Q Consensus 179 ~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~- 253 (508)
+..+.+.++ +++. .+++++|++..+++..|.+.+ +++|.++|++ ||+++|+|++|+
T Consensus 210 ~~~~~~~l~--~~i~-----~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~------------~~~llI~DEv~~g 270 (453)
T 4ffc_A 210 ARRAISRIE--TQIG-----AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE------------NGVVFIADEVQTG 270 (453)
T ss_dssp HHHHHHHHH--HHTC-----GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH------------HTCEEEEECTTTT
T ss_pred HHHHHHHHH--HhcC-----CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEecCccC
Confidence 122345666 3331 235677777777667777877 7888888887 999999999987
Q ss_pred CCCCCC----CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCC
Q 010538 254 CVTQPP----DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDG 329 (508)
Q Consensus 254 ~g~~~~----d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 329 (508)
+|.... +......|++++ +|.+++.-.+|++++++++++.+.+...+. ..
T Consensus 271 ~g~~g~~~a~~~~~~~pdi~t~--sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~------------------------t~ 324 (453)
T 4ffc_A 271 FARTGAWFASEHEGIVPDIVTM--AKGIAGGMPLSAVTGRAELMDAVYAGGLGG------------------------TY 324 (453)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEE--CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC------------------------SS
T ss_pred CCcccccchhhhcCCCcchHhh--hhhhcCCcCeEEEEECHHHHhhhcccCcCC------------------------CC
Confidence 332211 111223566654 598883113899999999877666542111 12
Q ss_pred CCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCC
Q 010538 330 TASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDG 409 (508)
Q Consensus 330 t~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 409 (508)
+.|....++..++++.+.+. .+.++++++.+++++.|+++.. ..+.+..+.. .+.++++.+.+...
T Consensus 325 ~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~---------~g~~~~~~~~~~~~ 390 (453)
T 4ffc_A 325 GGNPVTCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAE--EVDIIGEVRG---------RGAMLAIEIVKPGT 390 (453)
T ss_dssp SSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHH--HCSSEEEEEE---------ETTEEEEEEBCTTS
T ss_pred CcCHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEEe---------eceEEEEEEecCcc
Confidence 23455566666677766543 4556666666666666654310 0023333322 16788888754110
Q ss_pred ---CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHH
Q 010538 410 ---SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFE 486 (508)
Q Consensus 410 ---~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~e 486 (508)
.......+.+.|.++||.++++.. ..+.+|+++++..|.+
T Consensus 391 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e 433 (453)
T 4ffc_A 391 LEPDAALTKSIAAEALSQGVLILTCGT-------------------------------------FGNVIRLLPPLVIGDD 433 (453)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECCEECT-------------------------------------TSCEEEECCCTTCCHH
T ss_pred cCCCHHHHHHHHHHHHhCCCEEecCCC-------------------------------------CCCEEEEECCCCCCHH
Confidence 111234577888899999987421 1478999999999999
Q ss_pred HHHHHHHhhhhhhhhh
Q 010538 487 DAKVNRCSSFDFVNFS 502 (508)
Q Consensus 487 ev~~l~~~~~~~~~~~ 502 (508)
|++++++.|+++++-+
T Consensus 434 ~i~~~l~~l~~~l~~~ 449 (453)
T 4ffc_A 434 LLDEGITALSDIIRAK 449 (453)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 222
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.80 E-value=1.3e-18 Score=180.71 Aligned_cols=347 Identities=12% Similarity=0.007 Sum_probs=206.8
Q ss_pred chHHHHHHhhccCC-CCCeeeeCCC------CCCCCHHHHHHHHHHhh-ccccCCCCCccchhhhhhHHHHHHHHHHHHH
Q 010538 25 SIDQIRATEFKRLE-NGTVYLDHAG------ATLYSELQMEAIFRDFT-TNVYGNPHSQSDISLATCDIVRAAREQVLDY 96 (508)
Q Consensus 25 ~~~~~r~~~f~~~~-~~~iyld~~~------~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 96 (508)
.+..+.+ .|.... ++.|.|.-|. ..++++.+.++. . .. .. .....|....+ ..+.|+.++++
T Consensus 15 ~i~~~~~-~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~-~-~~~~~---~~~~~Y~~~~G----~~~lr~aia~~ 84 (405)
T 3k7y_A 15 NILKTAR-EFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNAD-K-LVTEN---YKEKPYLLGNG----TEDFSTLTQNL 84 (405)
T ss_dssp HHHHHHH-HHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHH-H-HHHHH---CCCCCCCTTSS----CHHHHHHHHHH
T ss_pred hHHHHHH-HHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHH-H-HhcCC---CCCCCCCCCCC----cHHHHHHHHHH
Confidence 3556666 666542 5788888664 123455555553 3 32 11 01112222222 34455555555
Q ss_pred c----CC--CCCCceEEEcCChHHHHHHHHhhcCC-CCCCeEEEecccccchHHHHHHHHhcCCeEEEEccC-C-ccCcc
Q 010538 97 F----NA--SMKDYKCIFTSGATAALKLVGEAFPW-SHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVE-E-AVDND 167 (508)
Q Consensus 97 ~----~~--~~~~~~i~~t~g~t~al~~~~~~l~~-~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~-~-~~~~~ 167 (508)
+ +. +++..++++|+|+++|+.+++.++.. .+ ++|+++...|+++. ..++..|.+++.+|+. . +..+
T Consensus 85 ~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~- 159 (405)
T 3k7y_A 85 IFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHV---NMIESRGFNLKYINFFDYNLIDI- 159 (405)
T ss_dssp HHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHH---HHHHTTTCEEEEECCEETTTTEE-
T ss_pred HcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHH---HHHHHcCCeEEEEeccccccCCc-
Confidence 4 22 23311369999999999999988732 26 99998886666554 4455679999999983 2 2233
Q ss_pred ccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCC-CCCCccccCHHHHHHHHcCCccccccCCCCCCCeEE
Q 010538 168 GLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSE-CNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMV 246 (508)
Q Consensus 168 ~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~-~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~v 246 (508)
|+++++ +++.+ .+++++++++.+ |||||.+++.+++.++++ +|++++++|
T Consensus 160 --------------d~~~l~--~~l~~----~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~---------~~~~~~~~v 210 (405)
T 3k7y_A 160 --------------NYDLFL--NDLRN----IPNGSSVILQISCYNPCSVNIEEKYFDEIIE---------IVLHKKHVI 210 (405)
T ss_dssp --------------CHHHHH--HHHHH----SCSSCEEEECCSSCTTTCCCCCHHHHHHHHH---------HHHHHCCEE
T ss_pred --------------CHHHHH--HHHHh----CCCCeEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHHCCeEE
Confidence 677777 54421 145678887654 899999999998887776 566699999
Q ss_pred EEeccccCCC-CCCC-----C----CCCCCcEEEEeccccccCCCc--ceEEEE---echhHhhhccccccCceEEeccc
Q 010538 247 LIDAAKGCVT-QPPD-----L----SKYPVDFVVMSFYKIFGYPTG--LGALIM---RNDAAKLLKNTYFSGGTVAASIA 311 (508)
Q Consensus 247 ivD~a~~~g~-~~~d-----~----~~~~~D~~~~S~~K~~g~P~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~ 311 (508)
|+|.++..-. ...+ + ...+.-+++.|++|.|+ .+| +||+++ +++.++.+...+..
T Consensus 211 i~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~~~l~~--------- 280 (405)
T 3k7y_A 211 IFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS-LYGERAGALHIVCKNQEEKKIVFNNLCF--------- 280 (405)
T ss_dssp EEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC-CTTTTEEEEEEECSSHHHHHHHHHHHHH---------
T ss_pred EEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC-CccccceEEEEEeCCHHHHHHHHHHHHH---------
Confidence 9999886311 1110 1 11123478899999999 667 899875 34444333221100
Q ss_pred chhhhhhccCccccccCCCCChhHHHHHHHHHHH------HHhcChHHHHHHHHHHHHHHHHHHh----cccCCCCCceE
Q 010538 312 DIDFVKRRQGVEELFEDGTASFLSIASIRHGFNL------INSLTVPAICRHIASLGMYVRKVLL----SLRHENGADVC 381 (508)
Q Consensus 312 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~------~~~~g~~~i~~~~~~l~~~l~~~L~----~l~~~~~~~~~ 381 (508)
..+.....++..+..++..++.. +.+ .+..+++++++.++++.+.|+ ++.. ..++
T Consensus 281 -----------~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~l~~~~~~~~~~R~~l~~~L~~~~~~~g~---~~~~ 345 (405)
T 3k7y_A 281 -----------IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIK-ELSQLSQRITNNRILFFNKLETYQKKYNL---NYDW 345 (405)
T ss_dssp -----------HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHGGGGTC---CCCG
T ss_pred -----------HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCC
Confidence 00011122333333333333321 111 256777889999999999998 6520 0113
Q ss_pred EEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccC
Q 010538 382 TIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCW 461 (508)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 461 (508)
++..+++ +.++++.++. . ....|+++||.+.+|
T Consensus 346 ~~~~p~g--------g~f~~~~l~~---~------~~~~L~~~gV~v~p~------------------------------ 378 (405)
T 3k7y_A 346 NVYKKQR--------GLFSFVPLLA---K------IAEHLKTHHIYIINN------------------------------ 378 (405)
T ss_dssp GGGSSCC--------SSEEECGGGG---G------GTTTTTTTTEECCTT------------------------------
T ss_pred ccccCCc--------eEEEecCCCH---H------HHHHHHHCCEeecCC------------------------------
Confidence 4444432 5677665543 1 224457889998762
Q ss_pred CCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 462 DDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 462 ~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
+ |||++. .+.+++++++++|++.++.
T Consensus 379 -----------~--Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 -----------G--RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp -----------S--EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred -----------C--eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 2 999973 3568999999999988753
No 223
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.79 E-value=1.5e-18 Score=181.44 Aligned_cols=336 Identities=11% Similarity=-0.001 Sum_probs=206.4
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+... .. . ...+ ......+++++++++++ .++ +|+||+|+
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~-~~--~-~~~~-----~~~~~~~l~~~la~~~~-~~~--~v~~~~sg 121 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALA-RG--W-LYGA-----PGEAEVLLAEKILGYVK-RGG--MIRFVNSG 121 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH-TC--S-CCSS-----CCHHHHHHHHHHHHHHC-TTC--EEEEESSH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHH-hC--C-CCCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCH
Confidence 56778887643 3357888888766543 21 1 1111 23456778899999986 456 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHH----------HhcCC------eEEEEccCCccCccccccccc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYA----------LSQGA------AAFAIDVEEAVDNDGLSESLV 174 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~----------~~~G~------~v~~v~~~~~~~~~~l~~~~~ 174 (508)
|+|+.+++.+.. ..+++.||+....|.+ ........ ...|+ .+..+|.+
T Consensus 122 seA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~------------- 188 (434)
T 2epj_A 122 TEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN------------- 188 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-------------
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-------------
Confidence 999999888611 1234556655544433 22111000 00122 23334321
Q ss_pred cccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEec
Q 010538 175 TSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDA 250 (508)
Q Consensus 175 ~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~ 250 (508)
|+++++ +++++. .+++++|+++.+++++|.+.| +++|.++|++ +|+++|+|+
T Consensus 189 -------d~~~le--~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~g~~lI~DE 244 (434)
T 2epj_A 189 -------DVEALE--RVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRE------------SGALLILDE 244 (434)
T ss_dssp -------CHHHHH--HHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHH------------HTCEEEEEE
T ss_pred -------CHHHHH--HHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHH------------cCCEEEEEc
Confidence 355666 444210 146789999888888999998 8889998887 999999999
Q ss_pred cccCCCCC---C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 251 AKGCVTQP---P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 251 a~~~g~~~---~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
+|+ |... . +......|++ |++|++++.-.+|++++++++++.+.+. +. ...
T Consensus 245 v~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~--~~-------------------~~~ 300 (434)
T 2epj_A 245 VVT-GFRLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGSREVMSLLTPQ--GK-------------------VFN 300 (434)
T ss_dssp TTT-TTTSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTT--SS-------------------BCC
T ss_pred chh-ceeCCcchhhHHhCCCCCee--eecchhcCCcceeeeeecHHHHHhhccC--CC-------------------ccc
Confidence 998 3311 0 0111246775 5569888311279999999887665542 00 000
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEee
Q 010538 326 FEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLK 405 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 405 (508)
....+.|...+++..++++.+.+ +.+.+++.++++++++.|+++... .++....+. .+.++++.++
T Consensus 301 ~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~--------~g~~~~i~~~ 366 (434)
T 2epj_A 301 AGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDR---TGLPYTINR--------VESMMQLFIG 366 (434)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHH---HTCCEEEEE--------ETTEEEEEET
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhh---CCCcEEEEE--------eeeEEEEEEe
Confidence 01123456667777778887765 356788888889998888764100 012111111 2688888886
Q ss_pred CCCC---------CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEE
Q 010538 406 RPDG---------SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIR 476 (508)
Q Consensus 406 ~~~~---------~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iR 476 (508)
+... ......++.+.|.++||.++++. ...+|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~~ 407 (434)
T 2epj_A 367 VEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN---------------------------------------LEAVF 407 (434)
T ss_dssp CSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------------------------TSCEE
T ss_pred CCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC---------------------------------------CCcEE
Confidence 4110 00123457788888999998752 12355
Q ss_pred EecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 477 VSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 477 is~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+ ++.+|.+|++++++.|+++++.+
T Consensus 408 ~--~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 408 T--GLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp C--CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred E--eccCCHHHHHHHHHHHHHHHHHH
Confidence 4 46789999999999999887643
No 224
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.78 E-value=1.2e-17 Score=174.25 Aligned_cols=351 Identities=12% Similarity=0.033 Sum_probs=204.0
Q ss_pred CCCeeeeCCCCCC------CCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGATL------YSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|+.++.. .+|.+++++.+... ... ...+ ......++.++++++++ .++ +++||+|+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~~---~~~~-----~~~~~~~la~~l~~~~~-~~~--~v~~~~sG 118 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVE-RGL---SFGA-----PTEMEVKMAQLVTDLVP-TMD--MVRMVNSG 118 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT-TCS---CCSS-----CCHHHHHHHHHHHHHST-TCS--EEEEESSH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHH-hCc---ccCC-----CCHHHHHHHHHHHhhCC-CCC--EEEEeCcH
Confidence 6788999876542 47889888766543 211 1111 12456677889999987 566 89999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccCcccccccccccccc-ccchhhhhcCC
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVDNDGLSESLVTSTKI-SLLPIQRRKGA 190 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~-~~d~~~l~~~~ 190 (508)
|+|+++++.... ..+++.|++....|.+.....-.....+......|....... .. ......+ -.|+++++ +
T Consensus 119 sea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~d~~~le--~ 192 (429)
T 4e77_A 119 TEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPT-DF---AKHTLTCTYNDLASVR--Q 192 (429)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCG-GG---GTTEEEECTTCHHHHH--H
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCC-cc---CCceeecCCCCHHHHH--H
Confidence 999999887432 234566666654444332211111011111111111110000 00 0000000 01466676 5
Q ss_pred CCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc---CCCCC-CCCC
Q 010538 191 SFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG---CVTQP-PDLS 262 (508)
Q Consensus 191 ~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~---~g~~~-~d~~ 262 (508)
++++ ..+++++|++..+++.+|.+.| +++|.++|++ +|+++|+|++|+ .|... .+..
T Consensus 193 ~l~~---~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~------------~~~lli~DEv~~g~r~g~~~~~~~~ 257 (429)
T 4e77_A 193 AFEQ---YPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDE------------FGALLIIDEVMTGFRVALAGAQDYY 257 (429)
T ss_dssp HHHH---STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH------------HTCEEEEEETTTBTTTBTTCHHHHT
T ss_pred HHHh---cCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEeccccCcccCcchHHHhc
Confidence 5532 1356788888888888899988 8999999997 999999999998 22210 1111
Q ss_pred CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHH
Q 010538 263 KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHG 342 (508)
Q Consensus 263 ~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~a 342 (508)
....|++ |++|.+++...+|++++++++++.+.+.-. .......+.|...+++..++
T Consensus 258 ~~~pdi~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~---------------------~~~~~t~~~~~~~~aaa~aa 314 (429)
T 4e77_A 258 HVIPDLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGP---------------------VYQAGTLSGNPIAMAAGFAC 314 (429)
T ss_dssp TCCCSEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSS---------------------BCC--CCCCCHHHHHHHHHH
T ss_pred CCCCCee--eecccccCCCCeEEEEECHHHHHHhccCCC---------------------ccccCCCCCCHHHHHHHHHH
Confidence 2235775 555988832248999999988776654200 00011124566677777778
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC-c---------c
Q 010538 343 FNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS-W---------F 412 (508)
Q Consensus 343 l~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~---------~ 412 (508)
++.+.+ +.+.++++++.+++++.|+++... .++....+ ..+.++++.+.+.+.. . .
T Consensus 315 l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
T 4e77_A 315 LTEISQ---VGVYETLTELTDSLATGLRHAAKE---ENIPLVVN--------HVGGMFGLFFTNADTVTCYQDVMNCDVE 380 (429)
T ss_dssp HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH---TTCCCEEE--------EETTEEEEECCSSSCCCSHHHHHTSCHH
T ss_pred HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh---CCCceEEE--------EeeeEEEEEEccCcccccccccccccHH
Confidence 887643 456677778888888877654100 01111111 1278888888653210 0 0
Q ss_pred CHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHH
Q 010538 413 GYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNR 492 (508)
Q Consensus 413 ~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~ 492 (508)
....+.+.|.++||.++++. ...+|+ +..+|.+|+++++
T Consensus 381 ~~~~~~~~l~~~Gi~v~~~~---------------------------------------~~~~~~--~~~~t~e~i~~~l 419 (429)
T 4e77_A 381 RFKRFFHLMLEEGVYLAPSA---------------------------------------FEAGFM--SLAHSNEDIQKTV 419 (429)
T ss_dssp HHHHHHHHHHHTTEECCSST---------------------------------------TSCEEC--CTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEeecC---------------------------------------CCCEEE--eccCCHHHHHHHH
Confidence 11457788888999988752 233554 5678999999999
Q ss_pred Hhhhhhhh
Q 010538 493 CSSFDFVN 500 (508)
Q Consensus 493 ~~~~~~~~ 500 (508)
+.|+++++
T Consensus 420 ~~l~~~l~ 427 (429)
T 4e77_A 420 NAARRCFA 427 (429)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998764
No 225
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.78 E-value=3.8e-18 Score=180.70 Aligned_cols=352 Identities=12% Similarity=0.026 Sum_probs=207.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+ .+..+|.+++++.+........... .+.. ....++.+++.+.++++++...+ .|+|++|+
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~-~~~~-~~~~~l~~~la~~l~~~~~~~~~--~v~f~~sG 136 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP-ALGI-LPPENFVEKLRESLLSVAPKGMS--QLITMACG 136 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC-CTTT-SCBTTHHHHHHHTGGGGCCTTCC--EEEEESSH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc-cccc-ccHHHHHHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 6788999854 2445889998886643211111111 1110 11234455555556667765666 89999999
Q ss_pred HHHHHHHHhhcC--------C----------------CCC---CeEEEecccccc-hHHHHHHH-----HhcCCeE---E
Q 010538 113 TAALKLVGEAFP--------W----------------SHQ---SSYMYTMENHNS-VLGIREYA-----LSQGAAA---F 156 (508)
Q Consensus 113 t~al~~~~~~l~--------~----------------~~g---~~vl~~~~~h~s-~~~~~~~~-----~~~G~~v---~ 156 (508)
++|+..++..+. . .+| +.||+.+..|.+ ........ +..|..+ .
T Consensus 137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (472)
T 1ohv_A 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 216 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence 999999887652 0 024 678777655544 44333221 1112211 1
Q ss_pred EEccCCc-cCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCc
Q 010538 157 AIDVEEA-VDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPE 231 (508)
Q Consensus 157 ~v~~~~~-~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~ 231 (508)
.+++... ...... .-.-...-..|+++++ ++|.+.....+++++|++..++|++|.+.| +++|.++|++
T Consensus 217 ~~~~p~~~~~~~~~--~~~~~~~~~~d~~~l~--~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~-- 290 (472)
T 1ohv_A 217 IAPFPRLKYPLEEF--VKENQQEEARCLEEVE--DLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRK-- 290 (472)
T ss_dssp EECCCCCCSSGGGC--HHHHHHHHHHHHHHHH--HHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHH--
T ss_pred ccCCCcccCccccc--cccchhHHHHHHHHHH--HHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHH--
Confidence 1222110 000000 0000000011567777 555210000127899999989999999888 8888888887
Q ss_pred cccccCCCCCCCeEEEEecccc-CCCCC--CCCCCCC----CcEEEEecccc-ccCCCcceEEEEechhHhhhccccccC
Q 010538 232 RILEISPFSKGRWMVLIDAAKG-CVTQP--PDLSKYP----VDFVVMSFYKI-FGYPTGLGALIMRNDAAKLLKNTYFSG 303 (508)
Q Consensus 232 ~~~~~~~~~~~g~~vivD~a~~-~g~~~--~d~~~~~----~D~~~~S~~K~-~g~P~G~G~l~~~~~~~~~l~~~~~g~ 303 (508)
+|+++|+|++|+ +|... +.+...+ +|++++| |. ++ | |+++ ++++ ..+.+.
T Consensus 291 ----------~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---G-G~~~-~~~~-~~~~~~---- 348 (472)
T 1ohv_A 291 ----------HGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---G-GFFH-KEEF-RPNAPY---- 348 (472)
T ss_dssp ----------TTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---E-EEEE-CGGG-SCSSSS----
T ss_pred ----------hCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc---C-CccC-chhh-cccccc----
Confidence 999999999998 45432 2333334 7877555 98 55 4 6665 4443 111111
Q ss_pred ceEEecccchhhhhhccCccccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCce-
Q 010538 304 GTVAASIADIDFVKRRQGVEELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADV- 380 (508)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~- 380 (508)
...+| .|...+++..++++.+.+ +.+.+++.+++++|++.|+++.. ..++
T Consensus 349 ----------------------~~~~T~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~--~~~~~ 401 (472)
T 1ohv_A 349 ----------------------RIFNTWLGDPSKNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQA--RYPQF 401 (472)
T ss_dssp ----------------------SSCCSSSSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH--HCTTT
T ss_pred ----------------------cccCccCccHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHh--hCCCc
Confidence 11122 356667777788888766 34678889999999999877510 0011
Q ss_pred EEEecCCCCCcccCCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCcc
Q 010538 381 CTIYGTYTSEVSYHDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVC 460 (508)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 460 (508)
+..+.+ .+.++.|.+.+. .....+.+.|.++||.+.++.
T Consensus 402 v~~~~~---------~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~g---------------------------- 440 (472)
T 1ohv_A 402 ISRVRG---------RGTFCSFDTPDE----SIRNKLISIARNKGVMLGGCG---------------------------- 440 (472)
T ss_dssp CEEEEE---------ETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET----------------------------
T ss_pred EEeecC---------CceEEEEEeCCh----hHHHHHHHHHHHCCeEEecCC----------------------------
Confidence 221211 167787776431 122357777878999987631
Q ss_pred CCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 461 WDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 461 ~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.+.||+++++.+|++||+++++.|+++++.
T Consensus 441 -----------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 441 -----------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp -----------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999987653
No 226
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.77 E-value=4.6e-17 Score=171.20 Aligned_cols=332 Identities=14% Similarity=0.044 Sum_probs=198.9
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+... .. . ...+ ..+..+++.+++++.++ .++ +|+||+|+
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~-~~--~-~~~~-----~~~~~~~la~~l~~~~~-~~~--~v~~~~gg 122 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-HG--V-QYAA-----SHPLEVRWAERIVAAFP-SIR--KLRFTGSG 122 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT-TT--C-SSCS-----SCHHHHHHHHHHHHHCT-TCS--EEEEESCH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHH-hC--C-CCCC-----CCHHHHHHHHHHHhhCC-CCC--EEEEeCCH
Confidence 55678888544 3357888888766542 21 1 1111 24556777888888886 666 89999999
Q ss_pred HHHHHHHHhh---cCCCCCCeEEEecccccchHH-HHHHHH-------hcCC------eEEEEccCCccCcccccccccc
Q 010538 113 TAALKLVGEA---FPWSHQSSYMYTMENHNSVLG-IREYAL-------SQGA------AAFAIDVEEAVDNDGLSESLVT 175 (508)
Q Consensus 113 t~al~~~~~~---l~~~~g~~vl~~~~~h~s~~~-~~~~~~-------~~G~------~v~~v~~~~~~~~~~l~~~~~~ 175 (508)
++|+.+++.+ + .. ++.||+.+..|++... ...... ..|+ .+..+|.+
T Consensus 123 ~eA~~~al~~ar~~-~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------- 186 (453)
T 2cy8_A 123 TETTLLALRVARAF-TG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPD-------------- 186 (453)
T ss_dssp HHHHHHHHHHHHHH-HC-CCEEEEECC----------------------------CGGGEEEECTT--------------
T ss_pred HHHHHHHHHHHHHh-hC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCC--------------
Confidence 9999999887 5 23 3556666544443222 211110 0122 12222221
Q ss_pred ccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 176 STKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 176 ~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
|+++++ +++++. .+++++|+++.++++||.+.| +++|.++|++ +|+++|+|++
T Consensus 187 ------d~~~le--~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~------------~g~~lI~DEv 243 (453)
T 2cy8_A 187 ------DIEGMR--EVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQ------------YGALFILDEV 243 (453)
T ss_dssp ------CHHHHH--HHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHH------------TTCEEEEECT
T ss_pred ------CHHHHH--HHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHH------------cCCEEEEecC
Confidence 456666 444210 146788988888888999988 8888888887 9999999999
Q ss_pred ccCCCCCCC----C--CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcccc
Q 010538 252 KGCVTQPPD----L--SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEEL 325 (508)
Q Consensus 252 ~~~g~~~~d----~--~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (508)
|+ |. ... + .....|++ |++|++++...+|++++++++++.+.+...+. ...
T Consensus 244 ~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~-------------------~~~ 300 (453)
T 2cy8_A 244 IS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRK-------------------VLH 300 (453)
T ss_dssp TT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC-------------------------
T ss_pred cc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhccccCCC-------------------cee
Confidence 98 33 111 1 11235766 56698883224899999998876665410000 000
Q ss_pred ccCCCCChhHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEe
Q 010538 326 FEDGTASFLSIASIRHGFNL-INSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNL 404 (508)
Q Consensus 326 ~~~gt~~~~~~~~l~~al~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 404 (508)
....+.|...+++..++++. + . +.+.+++.++++++++.|+++... .+.+..+.+ .+.++++.+
T Consensus 301 ~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~i~~ 365 (453)
T 2cy8_A 301 QGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFAR--KGLNWLAYG---------RFSGFHLMP 365 (453)
T ss_dssp ---CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEC---------CTTEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhh--CCCcEEEEE---------eeeEEEEEE
Confidence 01123455666677777876 5 3 456788888899998888764100 011111211 167889988
Q ss_pred eC-----C-------CC---CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCC
Q 010538 405 KR-----P-------DG---SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHG 469 (508)
Q Consensus 405 ~~-----~-------~~---~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 469 (508)
++ . +. ......++.+.|.++||.++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-------------------------------------- 407 (453)
T 2cy8_A 366 GLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR-------------------------------------- 407 (453)
T ss_dssp TSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT--------------------------------------
T ss_pred eccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC--------------------------------------
Confidence 64 1 00 0011345778888899998431
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 470 KPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 470 ~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+.+|+ +..+|.+|++++++.|+++++.+
T Consensus 408 ---~~~~l--~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 408 ---GSVFL--SAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp ---TEEEC--CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEe--eccCCHHHHHHHHHHHHHHHHHH
Confidence 23665 46789999999999999887654
No 227
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.77 E-value=5e-18 Score=177.30 Aligned_cols=349 Identities=10% Similarity=0.009 Sum_probs=204.2
Q ss_pred CCCeeeeCCCCC------CCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGAT------LYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|+.++. ..+|.+++++.+... ... ...+ ......+++++++++++ .++ +|+||+|+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~~---~~~~-----~~~~~~~l~~~la~~~~-~~~--~v~~~~~G 118 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE-RGT---SFGA-----PTEIENKLAKLVIERVP-SIE--IVRMVNSG 118 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH-HCS---CCSS-----CCHHHHHHHHHHHHHST-TCS--EEEEESSH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHh-hCc---CcCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCh
Confidence 677899987653 248889888766543 211 1111 12345667888999987 566 89999999
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEeccccc-chHHHHHHHHhcCCeEEEEccCCccCccc-c-ccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFPW-SHQSSYMYTMENHN-SVLGIREYALSQGAAAFAIDVEEAVDNDG-L-SESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~~-~~g~~vl~~~~~h~-s~~~~~~~~~~~G~~v~~v~~~~~~~~~~-l-~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|+..++..+.. .+++.|++....|. ....... ..|..+..++......+.. + .+..... -.|+++++
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~le- 191 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLI---KAGSGVATLGLPDSPGVPEGVAKNTITVA---YNDLESVK- 191 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCS---SCCTTC-----CCCTTCCHHHHTTEEEEE---TTCHHHHH-
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHH---hcCCcccccCCCCcCCCCCcccCceeecC---CCCHHHHH-
Confidence 9999998877632 35567776654443 3322111 1121111111110000000 0 0000000 00456666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC-----C
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP-----P 259 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~-----~ 259 (508)
+++.+ ..+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++|.. ... .
T Consensus 192 -~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~------------~~~~li~DEv~~g-~~~g~~~~~ 254 (429)
T 3k28_A 192 -YAFEQ---FGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQ------------NGALLIFDEVMTG-FRVAYNCGQ 254 (429)
T ss_dssp -HHHHH---HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHH------------HTCEEEEECTTTT-TTSSTTHHH
T ss_pred -HHHHh---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH------------cCCEEEEeccccc-cccCcchHH
Confidence 44421 1246788999988889999999 8999999997 9999999999962 111 0
Q ss_pred CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHH
Q 010538 260 DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASI 339 (508)
Q Consensus 260 d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l 339 (508)
+......|+++ ++|.+++...+|++++++++++.+.+.-.. ......+.|...+++.
T Consensus 255 ~~~~~~~di~t--~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~---------------------~~~~t~~~~~~a~aaa 311 (429)
T 3k28_A 255 GYYGVTPDLTC--LGKVIGGGLPVGAYGGKAEIMRQVAPSGPI---------------------YQAGTLSGNPLAMAAG 311 (429)
T ss_dssp HHHTCCCSEEE--ECGGGGTTSCCEEEEECHHHHTTBTTTSSB---------------------CCCCTTTTCHHHHHHH
T ss_pred HHhCCCCceeh--hhhhhcCCCCeEEEEEcHHHHhhhccCCCc---------------------cccCCCCCChHHHHHH
Confidence 01122356655 559887333489999999887766532000 0001123344555555
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC---------
Q 010538 340 RHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS--------- 410 (508)
Q Consensus 340 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------- 410 (508)
.++++.+ . +++.++++++++++++.|+++... .+.+..+.. .+.++++.+.+....
T Consensus 312 ~aal~~~---~-~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~ 376 (429)
T 3k28_A 312 YETLVQL---T-PESYVEFERKAEMLEAGLRKAAEK--HGIPHHINR---------AGSMIGIFFTDEPVINYDAAKSSN 376 (429)
T ss_dssp HHHHHTC---C-HHHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEE---------ETTEEEEESSSSCCCSHHHHTTSC
T ss_pred HHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHhh--CCCCEEEEe---------eccEEEEEEecCCccccccccccc
Confidence 5555543 2 778888999999999988764100 011111111 267888877532210
Q ss_pred ccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHH
Q 010538 411 WFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKV 490 (508)
Q Consensus 411 ~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~ 490 (508)
......+.+.|.++||.++++. .+.+|++ +.+|.+|+++
T Consensus 377 ~~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~~r~~--~~~t~e~i~~ 415 (429)
T 3k28_A 377 LQFFAAYYREMVEQGVFLPPSQ---------------------------------------FEGLFLS--TVHSDADIEA 415 (429)
T ss_dssp HHHHHHHHHHHHHTTEECCSST---------------------------------------TSCBCCC--TTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCeEEecCC---------------------------------------CCCEEEE--CCCCHHHHHH
Confidence 0012457778888999988742 3457875 4679999999
Q ss_pred HHHhhhhhhhhh
Q 010538 491 NRCSSFDFVNFS 502 (508)
Q Consensus 491 l~~~~~~~~~~~ 502 (508)
++++|+++++.+
T Consensus 416 ~l~~l~~~l~~~ 427 (429)
T 3k28_A 416 TIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 228
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.76 E-value=9.3e-18 Score=174.33 Aligned_cols=330 Identities=12% Similarity=0.048 Sum_probs=203.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCCCCceEEEcCChHHHHH-HHHhhcC--CCCCCeEEEecccccchHHHHHHHHhcCCeEEE
Q 010538 81 ATCDIVRAAREQVLDYFNASMKDYKCIFTSGATAALK-LVGEAFP--WSHQSSYMYTMENHNSVLGIREYALSQGAAAFA 157 (508)
Q Consensus 81 ~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~t~al~-~~~~~l~--~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~ 157 (508)
......+.+..++.+++|.+... ...+++|+|.+.+ +++.+.. ..+++.|+++...|.|+...+.++ |+..+.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp~~~-~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---Gl~p~~ 170 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCc-eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---CCeeEE
Confidence 34566778889999999997652 5688899885444 4444432 113688999999999998877765 999888
Q ss_pred Ecc---CCccCccccccccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCcccc
Q 010538 158 IDV---EEAVDNDGLSESLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERIL 234 (508)
Q Consensus 158 v~~---~~~~~~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~ 234 (508)
|+. +..+.+ |+++++ ++|++.. .+.+.+|+.+..++.+|.+.|+++|.++||+
T Consensus 171 v~~~~~~~~~~i---------------d~~~le--~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~----- 226 (450)
T 3bc8_A 171 IENVLEGDELRT---------------DLKAVE--AKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICAN----- 226 (450)
T ss_dssp ECCEEETTEEEC---------------CHHHHH--HHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHH-----
T ss_pred EEeeecCccCCc---------------CHHHHH--HHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHH-----
Confidence 865 333444 788888 7775421 1245566666555556799999999999998
Q ss_pred ccCCCCCCCeEEEEeccccCCCCCCC-C--C--C-CCCcEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEE
Q 010538 235 EISPFSKGRWMVLIDAAKGCVTQPPD-L--S--K-YPVDFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVA 307 (508)
Q Consensus 235 ~~~~~~~~g~~vivD~a~~~g~~~~d-~--~--~-~~~D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~ 307 (508)
+|++++||+||+.-..... + . + .++|+++.|+|||+..|.|.+++++++ +.++.+...+.+.
T Consensus 227 -------~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~---- 295 (450)
T 3bc8_A 227 -------YDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR---- 295 (450)
T ss_dssp -------HTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC----
T ss_pred -------CCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcC----
Confidence 9999999999985332211 1 1 1 268999999999988899999999864 3443333322111
Q ss_pred ecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCC
Q 010538 308 ASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTY 387 (508)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~ 387 (508)
..++| .+.++.++..+...++.+..++..++++++++.|+++.. .-+.++++.+
T Consensus 296 -------------------~s~Sp----sL~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~---~~g~~~l~~~ 349 (450)
T 3bc8_A 296 -------------------ASASP----SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAE---AHNERLLQTP 349 (450)
T ss_dssp -------------------BCSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTCCBCCCT
T ss_pred -------------------CcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---hcCceecCCc
Confidence 11111 133444444334556777888889999999999987720 0045666543
Q ss_pred CCCcccCCCCceEEEEeeCCC-CCccCHHHHHHHHhhCC---Ceecc-CCCCCchHHHhhcCCChhhhhhhhhcCCccCC
Q 010538 388 TSEVSYHDTGSMVSFNLKRPD-GSWFGYREVEKLASLSG---IQLRT-GCFCNPGACAKYLGLSHSDLLSNIEAGHVCWD 462 (508)
Q Consensus 388 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~~L~~~g---I~v~~-g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 462 (508)
.. +.-..+.+.... ....+..++.-.+...| ..+.+ |.. +.++ . +.++.+|...+
T Consensus 350 ~~-------~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~-------~~~~--~-~~l~~~gi~~E--- 409 (450)
T 3bc8_A 350 HN-------PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV-------QTVS--G-HTFRGFMSHAD--- 409 (450)
T ss_dssp TC-------SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE-------EEET--T-EEEETTTTTSS---
T ss_pred cC-------CCcceeecccccccccCCCceeEEEecCCCCccceeeecccc-------cchh--H-HHHHHcCCeee---
Confidence 21 111223333211 11134445555554444 33321 000 0000 0 11122222211
Q ss_pred CccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 463 DNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 463 ~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
-....+|=+.++..+|.+|+++|+++|+++.+.
T Consensus 410 ------~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 410 ------NYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp ------CCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------cCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 123578999999999999999999999998653
No 229
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.76 E-value=3.3e-17 Score=170.67 Aligned_cols=330 Identities=15% Similarity=0.063 Sum_probs=202.1
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++..|+|..+. +..+|.+++++.+... .. ....+ ......++.+.++++++ .++ +|+|++|+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~---~~~~~-----~~~~~~~l~~~l~~~~~-~~~--~v~~~~~g 117 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLE-RG---LTFGA-----PSPLEVALAKKVKRAYP-FVD--LVRFVNSG 117 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH-TC---SCCSS-----CCHHHHHHHHHHHHHCT-TCC--EEEEESSH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHH-hC---CCCCC-----CCHHHHHHHHHHHHhCC-CCC--EEEEeCCH
Confidence 56678887643 4457888888766543 21 11111 23456778889999986 566 89999999
Q ss_pred HHHHHHHHhh---cCCCCCCeEEEecccccch-HHHHHHHH----------hcCC------eEEEEccCCccCccccccc
Q 010538 113 TAALKLVGEA---FPWSHQSSYMYTMENHNSV-LGIREYAL----------SQGA------AAFAIDVEEAVDNDGLSES 172 (508)
Q Consensus 113 t~al~~~~~~---l~~~~g~~vl~~~~~h~s~-~~~~~~~~----------~~G~------~v~~v~~~~~~~~~~l~~~ 172 (508)
++|+.+++.. + .+++.||+.+..|++. ........ ..|+ .+..+|..
T Consensus 118 ~ea~~~al~~ar~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~----------- 184 (424)
T 2e7u_A 118 TEATMSALRLARGY--TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN----------- 184 (424)
T ss_dssp HHHHHHHHHHHHHH--HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----------
T ss_pred HHHHHHHHHHHHHh--hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----------
Confidence 9999998875 4 2345566665444432 21111000 0121 23333321
Q ss_pred cccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEE
Q 010538 173 LVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLI 248 (508)
Q Consensus 173 ~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~viv 248 (508)
|+++++ +.+++. .+++++|+++.+++++|.+.| +++|.++ ++ +|+++|+
T Consensus 185 ---------d~~~le--~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~------------~g~~lI~ 237 (424)
T 2e7u_A 185 ---------DPEGLR--EVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KA------------YGVLLIA 237 (424)
T ss_dssp ---------CHHHHH--HHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GG------------GTCEEEE
T ss_pred ---------CHHHHH--HHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HH------------cCCEEEE
Confidence 355666 444210 146788888777777999887 7778877 76 9999999
Q ss_pred eccccCCCCC---C--CCCCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 249 DAAKGCVTQP---P--DLSKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 249 D~a~~~g~~~---~--d~~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
|++|+ |... . +......|++ |++|++++.-.+|++++++++++.+.+.. . .
T Consensus 238 DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~--~-------------------~ 293 (424)
T 2e7u_A 238 DEVMT-GFRLAFGGATELLGLKPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLG--P-------------------V 293 (424)
T ss_dssp ECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTS--S-------------------B
T ss_pred ecCcc-ccccchhHHHHHhCCCcchh--hhhhhhhCCcceEEEEEcHHHHhhhcccC--C-------------------c
Confidence 99998 3311 0 0111235765 66799883113799999998877665420 0 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEE
Q 010538 324 ELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFN 403 (508)
Q Consensus 324 ~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 403 (508)
......+.|...+++..++++.+.+ .+++.+++.++++++++.|+++... .+....+.+ .+.++++.
T Consensus 294 ~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~---------~g~~~~i~ 360 (424)
T 2e7u_A 294 YQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKE--KGLPHTVNR---------VGSMITVF 360 (424)
T ss_dssp CCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEE---------ETTEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHh--CCCceEEEe---------eceEEEEE
Confidence 0001123455667777778887765 2678899999999999998765100 011111111 16788888
Q ss_pred eeCCCC---------CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 404 LKRPDG---------SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 404 ~~~~~~---------~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+... ......++.+.|.++||.++++. ...
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------------------~~~ 401 (424)
T 2e7u_A 361 FTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN---------------------------------------FEA 401 (424)
T ss_dssp SSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS---------------------------------------SSC
T ss_pred EeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC---------------------------------------CCc
Confidence 864110 00112357778888999998752 123
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+|++ ..+|.+|+++++++|++.
T Consensus 402 ~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 402 AFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp EECC--TTCCHHHHHHHHHHHHHH
T ss_pred eEee--ccCCHHHHHHHHHHHHHh
Confidence 5554 678999999999998865
No 230
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.72 E-value=3.9e-17 Score=170.00 Aligned_cols=357 Identities=12% Similarity=0.009 Sum_probs=204.1
Q ss_pred chHHHHHHhhccCCCCCe------eeeCCCCCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHc-
Q 010538 25 SIDQIRATEFKRLENGTV------YLDHAGATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYF- 97 (508)
Q Consensus 25 ~~~~~r~~~f~~~~~~~i------yld~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~- 97 (508)
.+-.+-+ .|.....+.| |.|..+.+++.+.|.++. ....... .. ..|.+..+ ..+.|+.+++++
T Consensus 31 ~i~~l~~-~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~-~~~~~~~--~~-~~Y~p~~G----~p~lr~aia~~~~ 101 (420)
T 4h51_A 31 VIFDLAK-RAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAE-QLLLDMN--LD-YEYLPISG----YQPFIDEAVKIIY 101 (420)
T ss_dssp HHHHHHH-HHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHH-HHHHHTT--CC-CCCCCTTC----CHHHHHHHHHHHH
T ss_pred hHHHHHH-HHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHH-HHHhcCC--CC-CCCCCcCC----hHHHHHHHHHHhc
Confidence 4555655 5654423344 556566677778777665 3333221 11 12222222 345566666654
Q ss_pred CC--CCCCceEEEcCChHHHHHHHHhhcC---CCCCCeEEEecccccchHHHHHHHHhcCCe-EEEEccCCccCcccccc
Q 010538 98 NA--SMKDYKCIFTSGATAALKLVGEAFP---WSHQSSYMYTMENHNSVLGIREYALSQGAA-AFAIDVEEAVDNDGLSE 171 (508)
Q Consensus 98 ~~--~~~~~~i~~t~g~t~al~~~~~~l~---~~~g~~vl~~~~~h~s~~~~~~~~~~~G~~-v~~v~~~~~~~~~~l~~ 171 (508)
|- +.+....+-|.|+|.|+..++..+. ..+|++|++++..++++....+. .|.+ |...+.......
T Consensus 102 g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~---aG~~~V~~~~~~~~~~~----- 173 (420)
T 4h51_A 102 GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA---AGWKNICTYAYYDPKTV----- 173 (420)
T ss_dssp C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH---TTCCCEEEEECEEGGGT-----
T ss_pred CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH---cCCeEEEeecccccccc-----
Confidence 32 2221123457888888766554432 46899999999888887766554 4776 444444322111
Q ss_pred ccccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCeEEEEecc
Q 010538 172 SLVTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRWMVLIDAA 251 (508)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a 251 (508)
.+|.+.+. +.+. ...++++++..+.++||||..++.+++.++++ +|++++++++.|.+
T Consensus 174 --------~~d~~~~~--~~l~---~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~---------~~~~~~~~~~~D~~ 231 (420)
T 4h51_A 174 --------SLNFEGMK--KDIL---AAPDGSVFILHQCAHNPTGVDPSQEQWNEIAS---------LMLAKHHQVFFDSA 231 (420)
T ss_dssp --------EECHHHHH--HHHH---HSCSSCEEEEESSSCTTTCCCCCHHHHHHHHH---------HHHHHTCEEEEEES
T ss_pred --------CCCHHHHH--HHHh---ccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH---------HHHhcCceEeeehh
Confidence 01333433 2221 12567899999999999999999998888877 56679999999998
Q ss_pred ccC-CCCCCCC---------CCCCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhc
Q 010538 252 KGC-VTQPPDL---------SKYPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRR 319 (508)
Q Consensus 252 ~~~-g~~~~d~---------~~~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 319 (508)
+.. .....+. .....-+++.|++|.|+ .+| +|++++..+..+........- .
T Consensus 232 Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RvG~~~~~~~~~~~~~~~~~~l------------~--- 295 (420)
T 4h51_A 232 YQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYSERAGTLSLLLKDKTKRADVKSVM------------D--- 295 (420)
T ss_dssp CTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGGGCEEEEEEECSCHHHHHHHHHHH------------H---
T ss_pred hhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-cccCceEEEEecccCHHHHHHHHHHH------------H---
Confidence 753 2111110 11123478889999999 667 899998766544332211000 0
Q ss_pred cCccccccCCCCChhHHHHHHHHHH------HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCccc
Q 010538 320 QGVEELFEDGTASFLSIASIRHGFN------LINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSY 393 (508)
Q Consensus 320 ~~~~~~~~~gt~~~~~~~~l~~al~------~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 393 (508)
. ..+.....++..+.......+. .+.+ .++.+++++.++++.|.+.|+++.. ...+..+.++.
T Consensus 296 -~-~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~-~~~~m~~r~~~~R~~l~~~L~~~g~---~~~~~~i~~q~----- 364 (420)
T 4h51_A 296 -S-LIREEYTCPPAHGARLAHLILSNNELRKEWEA-ELSAMAERIRTMRRTVYDELLRLQT---PGSWEHVINQI----- 364 (420)
T ss_dssp -H-HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTC---SSCCTHHHHCC-----
T ss_pred -H-hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC---CCCCCeecCCC-----
Confidence 0 1111122333333333332222 1111 2678889999999999999988621 00122222321
Q ss_pred CCCCceEEEEeeCCCCCccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCc
Q 010538 394 HDTGSMVSFNLKRPDGSWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTG 473 (508)
Q Consensus 394 ~~~~~~v~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (508)
+.+.+. +. +. +..++|+++||.+.+ .|
T Consensus 365 ---GmF~~~---gl-----s~-e~v~~L~e~~Vy~~~-----------------------------------------~g 391 (420)
T 4h51_A 365 ---GMFSFL---GL-----SK-AQCEYCQNHNIFITV-----------------------------------------SG 391 (420)
T ss_dssp ---SSEEEC---CC-----CH-HHHHHHHHTTEECCT-----------------------------------------TC
T ss_pred ---ceEEec---Cc-----CH-HHHHHHHhCCEEEcC-----------------------------------------CC
Confidence 444332 22 22 245788899998654 23
Q ss_pred eEEEecCCCCCHHHHHHHHHhhhhhhhhhh
Q 010538 474 AIRVSFGYMSTFEDAKVNRCSSFDFVNFSQ 503 (508)
Q Consensus 474 ~iRis~~~~~t~eev~~l~~~~~~~~~~~~ 503 (508)
|||+.. .|.++|++++++|.+.++.++
T Consensus 392 --Ris~Ag-l~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 392 --RANMAG-LTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp --EEEGGG-CCHHHHHHHHHHHHHHHC---
T ss_pred --EEEecc-CCHHHHHHHHHHHHHHHHHhh
Confidence 999874 478999999999999887664
No 231
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.67 E-value=8.3e-16 Score=157.94 Aligned_cols=323 Identities=12% Similarity=0.043 Sum_probs=203.6
Q ss_pred HHHHHHHHcCCCCCCceEEEcCChHHHHHHHHhhcCCC---CCCeEEEecccccchHHHHHHHHhcCCeEEEEccCCccC
Q 010538 89 AREQVLDYFNASMKDYKCIFTSGATAALKLVGEAFPWS---HQSSYMYTMENHNSVLGIREYALSQGAAAFAIDVEEAVD 165 (508)
Q Consensus 89 ~r~~la~~~~~~~~~~~i~~t~g~t~al~~~~~~l~~~---~g~~vl~~~~~h~s~~~~~~~~~~~G~~v~~v~~~~~~~ 165 (508)
+..++..+ |.+... ...+++|+|.++.+++.+...+ +++.||++...|-|++..+.++ |+++++|+...+..
T Consensus 122 ~ld~L~~~-G~~~~~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---Gl~Pv~V~p~~d~~ 196 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVA-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGD 196 (501)
T ss_dssp HHHHHHHT-TCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECEEEETT
T ss_pred HHHHHHHc-CCCCCC-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---CCeEEEEeeeeccc
Confidence 44555555 887642 6888899997766555544222 3589999999999998887765 99999997632111
Q ss_pred ccccccccccccccccchhhhhcCCCCCCCCCCC-CCceEEEEeCCCCCCccccCHHHHHHHHcCCccccccCCCCCCCe
Q 010538 166 NDGLSESLVTSTKISLLPIQRRKGASFPERDPAG-DAYNLFAFPSECNFSGSRFNLDLINIMKKNPERILEISPFSKGRW 244 (508)
Q Consensus 166 ~~~l~~~~~~~~~~~~d~~~l~~~~~l~~~~~~~-~~t~lv~~~~~~n~tG~~~~i~~i~~l~~~~~~~~~~~~~~~~g~ 244 (508)
.+..|+++++ ++|++. + +...+|+.+..++..|...|+++|.++||+ +|+
T Consensus 197 ------------~~~id~e~le--~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~------------~gI 247 (501)
T 3hl2_A 197 ------------ELRTDLKAVE--AKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICAN------------YDI 247 (501)
T ss_dssp ------------EEEECHHHHH--HHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHH------------HTC
T ss_pred ------------ccCCCHHHHH--HHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHH------------cCC
Confidence 1122788888 777542 2 233444444444545677999999999998 999
Q ss_pred EEEEeccccCCCCCC-----CCCCCC-CcEEEEeccccccCCCcceEEEEec-hhHhhhccccccCceEEecccchhhhh
Q 010538 245 MVLIDAAKGCVTQPP-----DLSKYP-VDFVVMSFYKIFGYPTGLGALIMRN-DAAKLLKNTYFSGGTVAASIADIDFVK 317 (508)
Q Consensus 245 ~vivD~a~~~g~~~~-----d~~~~~-~D~~~~S~~K~~g~P~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~ 317 (508)
+++||+||+.-.... ..-+.+ +|+++.|.||++-.|-|.|+++.++ ++++++...+.
T Consensus 248 pllVDeAhGah~~~~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP---------------- 311 (501)
T 3hl2_A 248 PHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP---------------- 311 (501)
T ss_dssp CEEEECTTCTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----------------
T ss_pred eEEEeCcchhhhhhhhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhCC----------------
Confidence 999999997633211 111235 9999999999777687755665654 45554433322
Q ss_pred hccCccccccCCCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCC
Q 010538 318 RRQGVEELFEDGTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTG 397 (508)
Q Consensus 318 ~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
|+.+....+.+..++..+...|+.++.++..++.++|++.|+++.. .-+-+++..+. ..
T Consensus 312 -----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~---~~ge~ll~~~~-------n~ 370 (501)
T 3hl2_A 312 -----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSE---AYNERLLHTPH-------NP 370 (501)
T ss_dssp -----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTCCBCCCTT-------CS
T ss_pred -----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChhhcCCCC-------Cc
Confidence 3334445666667777777888999999999999999999998642 11233443321 13
Q ss_pred ceEEEEeeCCCCCc-cCHHHHHHHHhhCCCe---e-ccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCC
Q 010538 398 SMVSFNLKRPDGSW-FGYREVEKLASLSGIQ---L-RTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPT 472 (508)
Q Consensus 398 ~~v~~~~~~~~~~~-~~~~~l~~~L~~~gI~---v-~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 472 (508)
--+.+.+....... -....+-..|-.++|. | .+|..-. -.++. -..+|.++ ..+..
T Consensus 371 is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~-i~g~~---------f~~~g~h~---------~~~~~ 431 (501)
T 3hl2_A 371 ISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQT-VSGYT---------FRGFMSHT---------NNYPC 431 (501)
T ss_dssp SEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEE-ETTEE---------ESSTTTTS---------SCCSS
T ss_pred eeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceE-ECCee---------ecCcccCC---------CCCCc
Confidence 34555554432211 1223466677666553 2 2222000 00000 11222211 12346
Q ss_pred ceEEEecCCCCCHHHHHHHHHhhhhhhhh
Q 010538 473 GAIRVSFGYMSTFEDAKVNRCSSFDFVNF 501 (508)
Q Consensus 473 ~~iRis~~~~~t~eev~~l~~~~~~~~~~ 501 (508)
.++-++...-.+.+|||.+++.|.+.+.-
T Consensus 432 ~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 432 AYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999987643
No 232
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.35 E-value=1.9e-16 Score=166.71 Aligned_cols=334 Identities=13% Similarity=0.053 Sum_probs=200.6
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +-.+|.+++++.++.. ... ...+ ......++.++++++++ ..+ .++|++|+
T Consensus 98 dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~-~~~---~~~~-----~~~~~~~Lae~L~~~~p-~~~--~v~~~nSG 165 (465)
T 2yky_A 98 DGHAYVNFLGEYTAGLFGHSHPVIRAAVERALA-VGL---NLST-----QTENEALFAEAVCDRFP-SID--LVRFTNSG 165 (465)
Confidence 55668887542 2236778877755432 210 1111 23445667888888885 345 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHHHhcCC--eEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYALSQGA--AAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~~~~G~--~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
++|+..++.... ..+++.||+.+..|.+ ......-....|+ .+..+|.+ |+++++
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~--------------------d~~~l~- 224 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYN--------------------DVEGTA- 224 (465)
Confidence 999999987653 3455777776644432 2222200011233 22223321 355666
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCC--CCCC
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQP--PDLS 262 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~--~d~~ 262 (508)
+++++. .+++++|++..+++++|.+.| +++|.++|++ +|+++|+|++|+ +... ....
T Consensus 225 -~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~------------~g~llI~DEv~~-~r~g~~~a~~ 287 (465)
T 2yky_A 225 -DLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASR------------CGALLIFDEVMT-SRLSGGGAQE 287 (465)
Confidence 565321 257889998887778998887 6777777776 999999999998 4211 1111
Q ss_pred C--CCCcEEEEeccccccCCCc--ceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHH
Q 010538 263 K--YPVDFVVMSFYKIFGYPTG--LGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIAS 338 (508)
Q Consensus 263 ~--~~~D~~~~S~~K~~g~P~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 338 (508)
. ...|++ +++|++| + | +|++++++++++.+.+...+.. ......+.|...+++
T Consensus 288 ~~gv~pDi~--t~sK~lg-~-G~piG~v~~~~~i~~~l~~~~~g~~-------------------~~~~T~~~npla~aA 344 (465)
T 2yky_A 288 MLGISADLT--TLGKYIG-G-GMSFGAFGGRRDLMERFDPARDGAF-------------------AHAGTFNNNILTMSA 344 (465)
Confidence 1 235655 5679998 4 4 7999999998776665200100 000011234445556
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC--C-------
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD--G------- 409 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~------- 409 (508)
..++++.+.+ +.+.+++.++.+++++.|+++.. ...+..... ..+.++++.+.+.+ .
T Consensus 345 a~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~-----~~~~~~~v~------g~G~~~~i~~~~~~~~~~~~~~~~ 410 (465)
T 2yky_A 345 GHAALTQIYT---RQAASDLSASGDRFRANLNRIAV-----ENQAPLQFT------GLGSLGTIHFSRAPIRSAGDVRAA 410 (465)
Confidence 6667887655 45778889999999999877621 112211111 12778888775310 0
Q ss_pred CccCHHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 410 SWFGYREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 410 ~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
..-....+.+.|.++||.+.++. .+. +++.+|++|++
T Consensus 411 d~~~~~~~~~~ll~~GV~v~p~~---------------------------------------~~~----~s~~~t~edid 447 (465)
T 2yky_A 411 DQQLKELFFFHMLRKGIYLAPRG---------------------------------------MYA----LSLEIADAGRD 447 (465)
Confidence 00002346777778999987642 011 55568999999
Q ss_pred HHHHhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFS 502 (508)
Q Consensus 490 ~l~~~~~~~~~~~ 502 (508)
++++++.++++.+
T Consensus 448 ~~l~~l~~~l~~~ 460 (465)
T 2yky_A 448 AFAEALADFIGEQ 460 (465)
Confidence 9999999887654
No 233
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.49 E-value=2.1e-12 Score=135.09 Aligned_cols=334 Identities=15% Similarity=0.109 Sum_probs=196.7
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|+|..+. +--+|.+++++.++... .. . ..... ....++.+.+++.+.. .+ .+.|++++
T Consensus 85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~-~~-~-~~~~~------~~~~~lae~l~~~~p~-~~--~v~f~~SG 152 (454)
T 4ao9_A 85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQG-GI-N-LTGHN------LLEGRLARLICERFPQ-IE--QLRFTNSG 152 (454)
T ss_dssp TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHT-CS-C-CCSEE------SSHHHHHHHHHHHSTT-CS--EEEEESSH
T ss_pred CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhc-CC-C-ccCCc------HHHHHHHHHHHHhCCC-CC--EEEEeCch
Confidence 78889998542 44589999988665532 11 1 11111 1133456778887763 44 79999999
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEecccccc-hHHHHHHH--HhcCCeEEEEccCCccCccccccccccccccccchhhhhc
Q 010538 113 TAALKLVGEAFP-WSHQSSYMYTMENHNS-VLGIREYA--LSQGAAAFAIDVEEAVDNDGLSESLVTSTKISLLPIQRRK 188 (508)
Q Consensus 113 t~al~~~~~~l~-~~~g~~vl~~~~~h~s-~~~~~~~~--~~~G~~v~~v~~~~~~~~~~l~~~~~~~~~~~~d~~~l~~ 188 (508)
|+|++.++.... ..+.+.|+.....|-. .......- .........+|.+ |++.++
T Consensus 153 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n--------------------d~~~l~- 211 (454)
T 4ao9_A 153 TEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN--------------------DAQTAR- 211 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT--------------------CHHHHH-
T ss_pred HHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc--------------------hHHHHH-
Confidence 999998876542 2344667666544322 11110000 0001223333332 234444
Q ss_pred CCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEeccccCCCCCCCC---
Q 010538 189 GASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKGCVTQPPDL--- 261 (508)
Q Consensus 189 ~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~~g~~~~d~--- 261 (508)
+.+++ ..+++..|++..+....|.+.| +++|.++|++ +|+++|+|++++ |..-.-.
T Consensus 212 -~~l~~---~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~------------~g~lLI~DEV~t-GR~G~~~a~e 274 (454)
T 4ao9_A 212 -AQIER---HGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ------------VGALLVFDEVMT-SRLAPHGLAN 274 (454)
T ss_dssp -HHHHH---TGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH------------HTCEEEEECTTG-GGGSTTCHHH
T ss_pred -HHHhh---cCCceEEEEeccccCCCCccCCchhhHHHHHHHHhh------------cCCEEEEECCCc-CCCccccchh
Confidence 33322 2457889999999999999998 7788888887 999999999997 3211111
Q ss_pred -CCCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCC--ChhHHHH
Q 010538 262 -SKYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTA--SFLSIAS 338 (508)
Q Consensus 262 -~~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~~ 338 (508)
-....|+++++ |.+|+-..+|.+.++++..+.+.|..- ..+..+|. |...+++
T Consensus 275 ~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~~----------------------~~~h~~T~~gnPla~AA 330 (454)
T 4ao9_A 275 KLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRTG----------------------PLAHSGTFNNNVMTMAA 330 (454)
T ss_dssp HHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTTC----------------------SCCCCCTTTTCHHHHHH
T ss_pred ccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhccC----------------------CccccCCCCCCHHHHHH
Confidence 01236998877 866632238999999999876654310 01123333 3445555
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC------cc
Q 010538 339 IRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS------WF 412 (508)
Q Consensus 339 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~ 412 (508)
..++|+.+.+ +++.+++.++.++|++.|+++....+.+ ..+.+ .+.++.+.+.+.+.. ..
T Consensus 331 ala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~-~~vrg----------~G~m~gi~f~~~~~~~~~~~~~~ 396 (454)
T 4ao9_A 331 GYAGLTKLFT---PEAAGALAERGEALRARLNALCANEGVA-MQFTG----------IGSLMNAHFVQGDVRSSEDLAAV 396 (454)
T ss_dssp HHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHHTBS-CEEEE----------ETTEEEEESCCSCCCSGGGGTTC
T ss_pred HHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHhhCCCC-EEEee----------eceEEEEEEecCCCCCHHHHHhh
Confidence 5566666543 6778888899999998887642100000 11211 256666665332111 01
Q ss_pred CH---HHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHH
Q 010538 413 GY---REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAK 489 (508)
Q Consensus 413 ~~---~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~ 489 (508)
+. ..+...+.++||.+.+. +.+.+ ..-+|++|||
T Consensus 397 d~~~~~~~~~~ll~~Gv~~~p~-----------------------------------------~~~~~--s~~~T~~dId 433 (454)
T 4ao9_A 397 DGRLRQLLFFHLLNEDIYSSPR-----------------------------------------GFVVL--SLPLTDADID 433 (454)
T ss_dssp CHHHHHHHHHHHHHTTEECCTT-----------------------------------------CEEEC--CTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEcCC-----------------------------------------CCEEE--eCCCCHHHHH
Confidence 11 23455667889987652 33444 4447999999
Q ss_pred HHHHhhhhhhhhhh
Q 010538 490 VNRCSSFDFVNFSQ 503 (508)
Q Consensus 490 ~l~~~~~~~~~~~~ 503 (508)
++++++++++.-..
T Consensus 434 ~~l~al~~~l~~~~ 447 (454)
T 4ao9_A 434 RYVAAIGSFIGGHG 447 (454)
T ss_dssp HHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.42 E-value=1.3e-10 Score=121.87 Aligned_cols=359 Identities=11% Similarity=0.036 Sum_probs=206.3
Q ss_pred CCCeeeeCCC------CCCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCC-CCCceEEEcCC
Q 010538 39 NGTVYLDHAG------ATLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNAS-MKDYKCIFTSG 111 (508)
Q Consensus 39 ~~~iyld~~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~~~i~~t~g 111 (508)
++..|||..+ .|--+|.+++++.++.. .... ...... ..+...++.+++++++..+ .+ .+.|+++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-~~~~-~~~~~~----~~~~~~~lae~L~~~~p~~~~~--~v~f~~s 133 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAA-HFTH-TCFMVT----PYEGYVAVTEQLNRLTPGDHAK--RTVLFNS 133 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHH-HCSC-CTTTTS----CCHHHHHHHHHHHHHSSCSSCE--EEEEESS
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHh-hccC-cccCcc----CcHHHHHHHHHHHHhCCCCCCc--EEEEeCC
Confidence 7788999743 34558999988766443 2211 111111 1122334556778887654 34 7899999
Q ss_pred hHHHHHHHHhhcC-CCCCCeEEEeccccc-chHHHHHHHHh-------c---CCeEEEEccCCccC--cccccccccccc
Q 010538 112 ATAALKLVGEAFP-WSHQSSYMYTMENHN-SVLGIREYALS-------Q---GAAAFAIDVEEAVD--NDGLSESLVTST 177 (508)
Q Consensus 112 ~t~al~~~~~~l~-~~~g~~vl~~~~~h~-s~~~~~~~~~~-------~---G~~v~~v~~~~~~~--~~~l~~~~~~~~ 177 (508)
+|+|+..++.... ..+...|+.....|- ........... . ...+..+|...... ..+. ....
T Consensus 134 GsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~----~~~~ 209 (456)
T 4atq_A 134 GAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEI----TGAE 209 (456)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTC----CHHH
T ss_pred hHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcc----cHHH
Confidence 9999988775532 234566776654443 33333221100 0 12345555431100 0000 0000
Q ss_pred ccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc
Q 010538 178 KISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG 253 (508)
Q Consensus 178 ~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~ 253 (508)
......+.++ ..+ ..+++..|++.-+....|.+.| ++.+.++|++ ||+++|+|++|+
T Consensus 210 ~~~~~~~~~e--~~~-----~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~------------~gillI~DEV~t 270 (456)
T 4atq_A 210 AAKRAITMIE--KQI-----GGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKE------------KGIVFIADEVQS 270 (456)
T ss_dssp HHHHHHHHHH--HHT-----CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHH------------HTCEEEEECTTT
T ss_pred HHHHHHHHHH--Hhh-----cCCceEEEEeccccCCCCccccchhhhHHHHHHHhh------------cCCceEeccccc
Confidence 0011122233 111 2356888999888888898887 5677777776 999999999987
Q ss_pred C-CCCCC--CCC--CCCCcEEEEeccccccCCCcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccC
Q 010538 254 C-VTQPP--DLS--KYPVDFVVMSFYKIFGYPTGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFED 328 (508)
Q Consensus 254 ~-g~~~~--d~~--~~~~D~~~~S~~K~~g~P~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (508)
. |..-. -.. ....|+++++ |.+|+-.-+|.++++++..+.+.+...++.
T Consensus 271 G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~~~~~~~~T------------------------ 324 (456)
T 4atq_A 271 GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAITGRADLLDAVHPGGLGGT------------------------ 324 (456)
T ss_dssp TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSCTTSSCCS------------------------
T ss_pred ccCCccccccccccCCCCchhhhh--hcccCcCCceeeEecHHHHhcccccCCCCC------------------------
Confidence 4 32211 111 1247999887 865532228999999998776655422211
Q ss_pred CCCChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCC
Q 010538 329 GTASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPD 408 (508)
Q Consensus 329 gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 408 (508)
.+-|..+.++..++++.+.+. ++.++..++.++|.+.|+++..........++++-.. ++.++.+.+....
T Consensus 325 f~gnpla~aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG------~Gl~~giel~~~~ 395 (456)
T 4atq_A 325 YGGNPVACAAALAAIDTMEQH---DLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRG------RGAMLAIELVQPG 395 (456)
T ss_dssp SSSCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEE------ETTEEEEEEBCTT
T ss_pred CCCChHHHHhhHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeee------cceEEEEEEecCC
Confidence 122455666667788887764 4567777778888777765421000000111221111 2677788875432
Q ss_pred CCccC---HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCH
Q 010538 409 GSWFG---YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTF 485 (508)
Q Consensus 409 ~~~~~---~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~ 485 (508)
....+ ...+.+.+.++|+.+.+.- + ..+.||+.+.+-.|+
T Consensus 396 ~~~~~~~~~~~v~~~~~~~Gvl~~~~g---~----------------------------------~~~~irl~PpL~it~ 438 (456)
T 4atq_A 396 SKEPNAELTKAVAAACLKEGVIILTCG---T----------------------------------YGNVIRLLPPLVISD 438 (456)
T ss_dssp SCCBCHHHHHHHHHHHHHTTEECEEEC---T----------------------------------TSCEEEECCCTTCCH
T ss_pred CCCcCHHHHHHHHHHHHHCCCEEEecC---C----------------------------------CCCEEEEECCCCCCH
Confidence 22111 1347778888999986521 0 157899999999999
Q ss_pred HHHHHHHHhhhhhhh
Q 010538 486 EDAKVNRCSSFDFVN 500 (508)
Q Consensus 486 eev~~l~~~~~~~~~ 500 (508)
+|++++++.+.+.++
T Consensus 439 ~~id~~l~~l~~al~ 453 (456)
T 4atq_A 439 ELLIDGLEVLAAAIK 453 (456)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.40 E-value=7.2e-11 Score=124.36 Aligned_cols=360 Identities=11% Similarity=0.045 Sum_probs=204.5
Q ss_pred CCCeeeeCCCC------CCCCHHHHHHHHHHhhccccCCCCCccchhhhhhHHHHHHHHHHHHHcCCCCCCceEEEcCCh
Q 010538 39 NGTVYLDHAGA------TLYSELQMEAIFRDFTTNVYGNPHSQSDISLATCDIVRAAREQVLDYFNASMKDYKCIFTSGA 112 (508)
Q Consensus 39 ~~~iyld~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~~i~~t~g~ 112 (508)
++.-|||..+. +--+|.+++++.+++. .... .+..+ +. ..+...++-++++++...+.+ .|.|++|+
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~-~l~~-~~~~~--~~-~~~~~~~lAe~L~~~~p~~~~--~v~f~~sG 137 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYE-RFPG-YHAFF--GR-MSDQTVMLSEKLVEVSPFDSG--RVFYTNSG 137 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHH-HCCC-CCCCT--TE-EEHHHHHHHHHHHHHSSCSSC--EEEEESSH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHH-hccc-ccccc--cc-cCHHHHHHHHHHHhhCCCCcc--EEEEeCch
Confidence 77889997543 4447888888766543 2211 11111 00 112234456778888877777 89999999
Q ss_pred HHHHHHHHhhcC------C-CCCCeEEEecccc-cchHHHHHHHH-----hcC---CeEEEEccCCc---cCcccccccc
Q 010538 113 TAALKLVGEAFP------W-SHQSSYMYTMENH-NSVLGIREYAL-----SQG---AAAFAIDVEEA---VDNDGLSESL 173 (508)
Q Consensus 113 t~al~~~~~~l~------~-~~g~~vl~~~~~h-~s~~~~~~~~~-----~~G---~~v~~v~~~~~---~~~~~l~~~~ 173 (508)
|+|+..++.... . .....||.....| ........... ..+ ..+..++.... ......+
T Consensus 138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--- 214 (473)
T 4e3q_A 138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE--- 214 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh---
Confidence 999988876531 1 2234566665444 33333322210 011 11223322110 0000000
Q ss_pred ccccccccchhhhhcCCCCCCCCCCCCCceEEEEeCCCCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEe
Q 010538 174 VTSTKISLLPIQRRKGASFPERDPAGDAYNLFAFPSECNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLID 249 (508)
Q Consensus 174 ~~~~~~~~d~~~l~~~~~l~~~~~~~~~t~lv~~~~~~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD 249 (508)
........++++ +.+. ....+++..|++.-+....|.+.| ++++.++|++ +|+++|+|
T Consensus 215 --~~~~~~~~~~l~--~~i~--~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~------------~gilLI~D 276 (473)
T 4e3q_A 215 --EQFVARLARELE--ETIQ--REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRK------------YDIPVISD 276 (473)
T ss_dssp --HHHHHHHHHHHH--HHHH--HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHH------------TTCCEEEE
T ss_pred --hHHHHHHHHHHH--HHHH--hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcc------------cceEEecc
Confidence 000000112222 2221 112356788999999998899888 5566666665 99999999
Q ss_pred ccccC-CCCCCCC----CCCCCcEEEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCcc
Q 010538 250 AAKGC-VTQPPDL----SKYPVDFVVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVE 323 (508)
Q Consensus 250 ~a~~~-g~~~~d~----~~~~~D~~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (508)
++++. |..-.-+ -....|+++.+ |.+++- .-+|.++++++..+.+.+......
T Consensus 277 EV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~------------------- 335 (473)
T 4e3q_A 277 EVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEAIE------------------- 335 (473)
T ss_dssp CTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHHHS-------------------
T ss_pred CccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCcccccccHHHHHHhcccccccc-------------------
Confidence 99874 3221111 12247999887 965521 128999999998766543211000
Q ss_pred ccccCCC--CChhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEE
Q 010538 324 ELFEDGT--ASFLSIASIRHGFNLINSLTVPAICRHIASLGMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVS 401 (508)
Q Consensus 324 ~~~~~gt--~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 401 (508)
.....+| -|..+.++..++++.+.+. .+.++..++.++|.+.|+++.. .+.+.-+ .+ ++.++.
T Consensus 336 ~~~hg~T~~Gnpla~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~---~~~v~~v--RG-------~Gl~~g 400 (473)
T 4e3q_A 336 EFPHGFTASGHPVGCAIALKAIDVVMNE---GLAENVRRLAPRFEERLKHIAE---RPNIGEY--RG-------IGFMWA 400 (473)
T ss_dssp CCCCCCTTTTCHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHHHHHHHTT---STTEEEE--EE-------ETTEEE
T ss_pred ccccCCCCCCCcchhhhhhhhhhhhccc---cHHHHHHHHHHHHHHHHHHHhc---CCCeeEE--ee-------cceEEE
Confidence 0011122 2445566666678877664 4567778888899888877631 1233211 11 266777
Q ss_pred EEeeCCCCC--ccC-----HHHHHHHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCce
Q 010538 402 FNLKRPDGS--WFG-----YREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGA 474 (508)
Q Consensus 402 ~~~~~~~~~--~~~-----~~~l~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (508)
+.+...... .++ ...+.+.+.++|+.+++. .+.
T Consensus 401 ielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------g~~ 440 (473)
T 4e3q_A 401 LEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------------------------------------GQS 440 (473)
T ss_dssp EEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------------------------------------TTE
T ss_pred EEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------------------------------------CCE
Confidence 776322111 011 235778888999998752 467
Q ss_pred EEEecCCCCCHHHHHHHHHhhhhhhhhh
Q 010538 475 IRVSFGYMSTFEDAKVNRCSSFDFVNFS 502 (508)
Q Consensus 475 iRis~~~~~t~eev~~l~~~~~~~~~~~ 502 (508)
+|+++.+..|++|+|.+++.+.+.++.+
T Consensus 441 i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 441 VVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877643
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.08 E-value=4e-09 Score=118.31 Aligned_cols=217 Identities=10% Similarity=0.014 Sum_probs=130.5
Q ss_pred CCCceEEEEeCC-CCCCccccC----HHHHHHHHcCCccccccCCCCCCCeEEEEecccc-CCCCCCCCC----CCCCcE
Q 010538 199 GDAYNLFAFPSE-CNFSGSRFN----LDLINIMKKNPERILEISPFSKGRWMVLIDAAKG-CVTQPPDLS----KYPVDF 268 (508)
Q Consensus 199 ~~~t~lv~~~~~-~n~tG~~~~----i~~i~~l~~~~~~~~~~~~~~~~g~~vivD~a~~-~g~~~~d~~----~~~~D~ 268 (508)
.+++..|++..+ ++..|.+.+ +++|.++|++ +|+++|+|++++ +|....-+. ....|+
T Consensus 592 ~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~------------~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi 659 (831)
T 4a0g_A 592 SAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRN------------RKIPVIFDEVFTGFWRLGVETTTELLGCKPDI 659 (831)
T ss_dssp -CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHH------------TTCCEEEECTTTTTTTTSBSSTHHHHSSCCSE
T ss_pred CCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHH------------cCCeEEEEcCccccccCCCchhhHhcCCCCcE
Confidence 356888888886 888888886 6777777776 999999999886 333221111 124688
Q ss_pred EEEeccccccCC-CcceEEEEechhHhhhccccccCceEEecccchhhhhhccCccccccCCCCChhHHHHHHHHHHHHH
Q 010538 269 VVMSFYKIFGYP-TGLGALIMRNDAAKLLKNTYFSGGTVAASIADIDFVKRRQGVEELFEDGTASFLSIASIRHGFNLIN 347 (508)
Q Consensus 269 ~~~S~~K~~g~P-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~ 347 (508)
+++| |.+++- .-+|++++++++.+.+.+.-.... | ...+ ..+.|....++..++++.+.
T Consensus 660 itls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~~~----------~-------~hg~-T~~g~Pla~Aaala~L~~i~ 719 (831)
T 4a0g_A 660 ACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKLKA----------L-------LHGH-SYSAHAMGCATAAKAIQWFK 719 (831)
T ss_dssp EEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGGGS----------C-------CCCC-TTTTCHHHHHHHHHHHHHHH
T ss_pred EEEe--cccccCccCcEEEEECHHHHHHHhccccccc----------c-------eeec-CCcccHHHHHHHHHHHHHHH
Confidence 7654 977631 026999999998776653210000 0 0000 11234556666777888876
Q ss_pred hcChH-HHHHHHHHH----HHHHHHHHhcccCCCCCceEEEecCCCCCcccCCCCceEEEEeeCCCCC----ccCHHHHH
Q 010538 348 SLTVP-AICRHIASL----GMYVRKVLLSLRHENGADVCTIYGTYTSEVSYHDTGSMVSFNLKRPDGS----WFGYREVE 418 (508)
Q Consensus 348 ~~g~~-~i~~~~~~l----~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~l~ 418 (508)
+.++. .+.+....+ .+.+.+.+.+.+ .+.-+.. .+.++.+.+...... ......+.
T Consensus 720 ~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~------~v~~vrg---------~Gl~~~iel~~~~~~~~~~~~~a~~~~ 784 (831)
T 4a0g_A 720 DPETNHNITSQGKTLRELWDEELVQQISSHS------AVQRVVV---------IGTLFALELKADASNSGYASLYAKSLL 784 (831)
T ss_dssp CTTTCTTBCTTSSBBCCCSCHHHHHHHHHST------TEEEEEE---------ETTEEEEEEC---------CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CceeEee---------cccEEEEEEecCccccccchHHHHHHH
Confidence 54321 111111111 223444555542 3433321 167777777432110 01123577
Q ss_pred HHHhhCCCeeccCCCCCchHHHhhcCCChhhhhhhhhcCCccCCCccccCCCCCceEEEecCCCCCHHHHHHHHHhhhhh
Q 010538 419 KLASLSGIQLRTGCFCNPGACAKYLGLSHSDLLSNIEAGHVCWDDNDIIHGKPTGAIRVSFGYMSTFEDAKVNRCSSFDF 498 (508)
Q Consensus 419 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~eev~~l~~~~~~~ 498 (508)
+.|.++||.++++ .+.||+++.+.+|.+||+++++.|.+.
T Consensus 785 ~~l~e~Gv~v~p~----------------------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~ 824 (831)
T 4a0g_A 785 IMLREDGIFTRPL----------------------------------------GNVIYLMCGPCTSPEICRRLLTKLYKR 824 (831)
T ss_dssp HHHHHTTEECCCB----------------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8888999998763 468999999999999999999999887
Q ss_pred hhhh
Q 010538 499 VNFS 502 (508)
Q Consensus 499 ~~~~ 502 (508)
++.+
T Consensus 825 l~~l 828 (831)
T 4a0g_A 825 LGEF 828 (831)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 6543
No 237
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=22.70 E-value=3.6e+02 Score=25.82 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHcC--CCCCCceEEEcCChHH-HHHHHHhhcCCCCCCeEEEecccccchHH--HHHHHHhcCCeEEEEccC
Q 010538 89 AREQVLDYFN--ASMKDYKCIFTSGATA-ALKLVGEAFPWSHQSSYMYTMENHNSVLG--IREYALSQGAAAFAIDVE 161 (508)
Q Consensus 89 ~r~~la~~~~--~~~~~~~i~~t~g~t~-al~~~~~~l~~~~g~~vl~~~~~h~s~~~--~~~~~~~~G~~v~~v~~~ 161 (508)
+++.+++.-- .+.. ++++|.|.+. ++..+..+......-+|++. +..|..-+ ....+...|+.+..|+-.
T Consensus 107 a~~~I~~~~~~~I~~g--~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~-EsrP~~qG~~la~~L~~~gI~vtli~Ds 181 (315)
T 3ecs_A 107 SRNKIADLCHTFIKDG--ATILTHAYSRVVLRVLEAAVAAKKRFSVYVT-ESQPDLSGKKMAKALCHLNVPVTVVLDA 181 (315)
T ss_dssp HHHHHHHHHGGGCCTT--EEEEECSCCHHHHHHHHHHHTTTCCEEEEEE-CCTTTTHHHHHHHHHHTTTCCEEEECGG
T ss_pred HHHHHHHHHHHHcCCC--CEEEEcCCcHHHHHHHHHHHHcCCeEEEEEe-cCCCcchHHHHHHHHHHcCCCEEEEehh
Confidence 4445554322 2444 6777755444 44445444422222345555 34554322 344456679999888643
No 238
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=22.50 E-value=1.3e+02 Score=29.44 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCceE-EEcCC--------hHHHHHHHHhhcC--CCCCCeEEEeccccc
Q 010538 84 DIVRAAREQVLDYFNASMKDYKC-IFTSG--------ATAALKLVGEAFP--WSHQSSYMYTMENHN 139 (508)
Q Consensus 84 ~~~~~~r~~la~~~~~~~~~~~i-~~t~g--------~t~al~~~~~~l~--~~~g~~vl~~~~~h~ 139 (508)
.-.+.+++.+.+.+|.+++ +| +++.. +...|..++.-|. .+++|.+++.-..|.
T Consensus 75 nDA~~m~~~L~~~~Gf~~~--~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~pgD~llfYFSGHG 139 (350)
T 4f6o_A 75 NDAHNIFNFLTNGYGYSSD--DIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQPNDSLFLHYSGHG 139 (350)
T ss_dssp HHHHHHHHHHHHHSCCCGG--GEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCCTTCEEEEEEESCE
T ss_pred HHHHHHHHHHHHhcCCCcc--ceeeecccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEEEcCCc
Confidence 3455677777777898876 55 44542 3334444444442 356888887666664
Done!