BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010539
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQN 101
S P +VVI GAG++GLS A LA+AGH+ +LEA + G +N
Sbjct: 44 SNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKTYRN 90
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
+ S P VV+ GAG++GLS A LA AGHK +LEA + G
Sbjct: 29 KTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGG 70
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90
S P VVI GAG+AGLS A LA AGH+ +LEA +
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 66
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 89/456 (19%), Positives = 171/456 (37%), Gaps = 78/456 (17%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQNLFGELGINDRLQWKEHS 118
K V+ GAGL GL +A L+ AGH+ + E + G + N+ +L
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQL---------SSG 52
Query: 119 MIFAMPNKPG----------EFS-----------RFDFPEVLPAPLNGILAILRNN--EM 155
+PN PG E S R + P + G I N+ +
Sbjct: 53 AFHXLPNGPGGPLACFLKEVEASVNIVRSEXTTVRVPLKKGNPDYVKGFKDISFNDFPSL 112
Query: 156 LTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALN-- 213
L++ ++ K A+ ++ G ++Q W++ Q V+ E I + +
Sbjct: 113 LSYKDRXKIALLIV------STRKNRPSGSSLQAWIKSQ-----VSDEWLIKFADSFCGW 161
Query: 214 --FINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL----GGEV 267
+ DE+ ++ + + + F PE C I++ ++++ GG++
Sbjct: 162 ALSLKSDEVPVEEVFEIIENXYR--------FGGTGIPEGGCKGIIDALETVISANGGKI 213
Query: 268 RLNSRVQKIELNDD---GTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFK 324
V KI + + G + + + + +++ + AT V L + + AYFK
Sbjct: 214 HTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHAATAV--LCSEALSKEADAAYFK 271
Query: 325 RLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELV 384
+ L I I + D L LL + ++ +++ E P + +
Sbjct: 272 XVGTLQPSAGIKICLAADEPLVGHTGVLLTPYTRRINGVNEVTQADPELAPPGKHLTXCH 331
Query: 385 FAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHV--VKTPRSVYKTIPN 442
A E + +SE I+ +++L ++FP + +Y V +++ +
Sbjct: 332 QYVAPENVKNLESE-IEXGLEDLKEIFPGK-----------RYEVLLIQSYHDEWPVNRA 379
Query: 443 CEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLS 478
P +P G Y+ GD K K +EG L
Sbjct: 380 ASGTDPGNETPFSGLYVVGDGAKGKGGIEVEGVALG 415
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQN 101
S P VV+ GAG++GLS A L+ AGH+ +LEA + G +N
Sbjct: 31 SNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRN 77
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQN 101
VV+ G G++GLS AK L + G L+LEARD + G I+N
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRN 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487
R PV + AG T K+ MEGAV +G+ A+ ++
Sbjct: 413 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVL 449
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQN 101
VV+ G G++GLS AK L + G L+LEARD + G I+N
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRN 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487
R PV + AG T K+ MEGAV +G+ A+ ++
Sbjct: 413 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVL 449
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQN 101
VV+ G G++GLS AK L + G L+LEARD + G I+N
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRN 57
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487
R PV + AG T K+ MEGAV +G+ A+ ++
Sbjct: 424 RQPVGRIFFAGTETATKWSGYMEGAVEAGERAAREVL 460
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P V++ G G GL+ + L AG K LLLEARD + G
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P V++ G G GL+ + L AG K LLLEARD + G
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P V++ G G GL+ + L AG K LLLEARD + G
Sbjct: 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 157
Query: 106 LG 107
LG
Sbjct: 158 LG 159
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 157
Query: 106 LG 107
LG
Sbjct: 158 LG 159
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 157
Query: 106 LG 107
LG
Sbjct: 158 LG 159
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 102/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V++++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVQYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 99 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 158
Query: 106 LG 107
LG
Sbjct: 159 LG 160
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 403 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 459
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 460 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 510
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 511 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 568
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 569 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 628
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 629 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 660
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 157
Query: 106 LG 107
LG
Sbjct: 158 LG 159
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 402 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 458
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 459 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 509
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 510 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 567
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 568 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 627
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 628 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 659
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 147 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 206
Query: 106 LG 107
LG
Sbjct: 207 LG 208
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 455 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 511
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 512 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 562
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 563 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 620
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 621 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 680
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 681 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 712
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 147 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 206
Query: 106 LG 107
LG
Sbjct: 207 LG 208
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 451 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 507
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 508 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 558
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 559 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 616
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 617 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 676
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 677 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 708
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 49 RTSPRPSKPL-KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ--NLFGE 105
R P P+K KV+I G+G++GL+ A+ L G LLEARD + G + N +
Sbjct: 269 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 328
Query: 106 LG 107
LG
Sbjct: 329 LG 330
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 101/272 (37%), Gaps = 47/272 (17%)
Query: 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDG----TVKNFLLTNGNVIDGDAYVFATPVDI 308
C+P+ + G +++LN+ V+++ G V + + DA + P+ +
Sbjct: 573 CVPVA---LAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGV 629
Query: 309 LKLQ---------LPENWKEMAY----FKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 355
LK Q LPE WK A F L K+V + FDR + +L
Sbjct: 630 LKQQPPAVQFVPPLPE-WKTSAVQRMGFGNLNKVV--------LCFDRVFWDPSVNLFGH 680
Query: 356 RSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWI-SCSDSEIIDATMKELAKLFPDE 414
S + ++ L Y P +L LV A + + SD I+ + L +F
Sbjct: 681 VGSTTASRGELFLFWNLYKAP--ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSS 738
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIPNCE---------------PCRPLQRSPVEGFYL 459
+ + ++ R Y + P P P+ +
Sbjct: 739 AVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFF 798
Query: 460 AGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491
AG++T + Y A++ GA+LSG A I ++
Sbjct: 799 AGEHTIRNYPATVHGALLSGLREAGRIADQFL 830
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95
P P +++I GAG+AGL L AGH +LEA VG
Sbjct: 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLL-LEARDVLVGAY--PNIQNLFGELGIN 109
+V++ GAG++G+S AK L++AG LL LEA D + G N + ELG N
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGAN 59
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 355 SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDE 414
SR V+ + K+Y + N ++ + + SD + M+ L K+FP +
Sbjct: 324 SRRGYYGVWQEFE---KQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIP---NCEPCRPLQRSPVEGFYLAGDYTKQKYLAS 471
D + + ++ + + + P N L R+PV Y G++T + Y
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQL-RAPVGRVYFTGEHTSEHYNGY 439
Query: 472 MEGAVLSGKLCAQAIV 487
+ GA LSG A+ ++
Sbjct: 440 VHGAYLSGIDSAEILI 455
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHKPLL-LEARDVLVGAY--PNIQNLFGELGIN 109
+V++ GAG++G+S AK L++AG LL LEA D + G N + ELG N
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGAN 59
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 7/136 (5%)
Query: 355 SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDE 414
SR V+ + K+Y + N ++ + + SD + M+ L K+FP +
Sbjct: 324 SRRGYYGVWQEFE---KQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGK 380
Query: 415 ISADQSKAKIVKYHVVKTPRSVYKTIP---NCEPCRPLQRSPVEGFYLAGDYTKQKYLAS 471
D + + ++ + + + P N L R+PV Y G++T + Y
Sbjct: 381 DVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQL-RAPVGRVYFTGEHTSEHYNGY 439
Query: 472 MEGAVLSGKLCAQAIV 487
+ GA LSG A+ ++
Sbjct: 440 VHGAYLSGIDSAEILI 455
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
K K++I GAG +G + LA+ GH+ +++ RD + G
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
K K++I GAG +G + LA+ GH+ +++ RD + G
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQN 101
VV+ G G++GL+ AK L++ L+LEARD + G ++N
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRN 65
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487
R PV Y AG T ++ MEGAV +G+ A+ ++
Sbjct: 432 RQPVGRIYFAGTETATQWSGYMEGAVEAGERAAREVL 468
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
K K++I GAG +G + LA+ GH+ +++ RD + G
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 61 VIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG-AYP----NIQNLFGELGINDRLQWK 115
++ G G +GL A+ L +AG K LLLE + L G AY N+ L E+G L K
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIG-GAYLHRK 63
Query: 116 EHSMIFAMPNKPGEFSRFDFP 136
H P E R+ P
Sbjct: 64 HH------PRLAAELDRYGIP 78
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 61 VIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG-AYP----NIQNLFGELGINDRLQWK 115
++ G G +GL A+ L +AG K LLLE + L G AY N+ L E+G L K
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIG-GAYLHRK 63
Query: 116 EHSMIFAMPNKPGEFSRFDFP 136
H P E R+ P
Sbjct: 64 HH------PRLAAELDRYGIP 78
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVGAYPNIQNLFG 104
P+K KV+I GAG+AGL A L G L+LEARD + G + G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQG 56
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVGAYPNIQNLFG 104
P+K KV+I GAG+AGL A L G L+LEARD + G + G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQG 56
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVGAYPNIQNLFG 104
P+K KV+I GAG+AGL A L G L+LEARD + G + G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQG 56
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVGAYPNIQNLFG 104
P+K KV+I GAG+AGL A L G L+LEARD + G + G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQG 56
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVGAYPNIQNLFG 104
P+K KV+I GAG+AGL A L G L+LEARD + G + G
Sbjct: 6 PAKK-KVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQG 56
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89
+ V++ GAGL GLSTA +LA G + L++E R
Sbjct: 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERR 37
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
VVI GAG +GL+ A+ L AG +LEARD + G
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGG 44
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGHMEGAVEAGERAAREILH 452
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 414 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 452
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 414 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILH 451
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P+ V I GAG++GL+ A L AG ++EARD + G
Sbjct: 2 PTLQRDVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGWMEGAVEAGERAAREILH 452
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGFMEGAVEAGERAAREILH 452
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL--VGAYPNIQ----NLFGELG 107
S+P+ ++IAGAG+ GLS A L AG K LLE+ + +G NIQ ELG
Sbjct: 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG 61
Query: 108 IN 109
+
Sbjct: 62 LG 63
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488
R PV+ Y AG T + MEGAV +G+ A+ I+
Sbjct: 415 RQPVDRIYFAGTETATHWSGLMEGAVEAGERAAREILH 452
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL--VGAYPNIQ----NLFGELG 107
S+P+ ++IAGAG+ GLS A L AG K LLE+ + +G NIQ ELG
Sbjct: 2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG 61
Query: 108 IN 109
+
Sbjct: 62 LG 63
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90
S V++ GAG G++ YLA G K LL+++ D
Sbjct: 1 STHFDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFD 36
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 31 DIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHK 82
D T+ + AA+L++ + + + + +KVV+ G G AG + K+L D G K
Sbjct: 157 DQQGTAVVVSAAFLNA-LKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK 207
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87
+ P +I GAG G+ A L++AG K LLLE
Sbjct: 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLE 37
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90
S + ++ GAG+ GL+ A+ LA GH+ L+ EA +
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37
>pdb|3NLC|A Chain A, Crystal Structure Of The Vp0956 Protein From Vibrio
Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr147
Length = 549
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 260 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 303
I LGGE+R ++RV + +DG + L+NG I V A
Sbjct: 230 IIELGGEIRFSTRVDDLHX-EDGQITGVTLSNGEEIKSRHVVLA 272
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89
VV+ G G AGL +A L AG+K +LEAR
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEAR 43
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P+ V I GAG +GL+ A L AG ++EARD + G
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P+ V I GAG +GL+ A L AG ++EARD + G
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94
P+ V I GAG +GL+ A L AG ++EARD + G
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87
P +I GAG G+ A L++AG K LLLE
Sbjct: 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLE 32
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 31 DIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHK 82
D T+ + AA+L++ + + + + +KVV+ G G AG + K+L D G K
Sbjct: 167 DQQGTAVVVSAAFLNA-LKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK 217
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLE-ARDVLVGA--YPNIQNLFGELGINDRLQWKE 116
V++ G G +GLS A +LA AG K L+L+ R + G PN L E + L+ E
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLE 63
Query: 117 -HSMIFAMPNKPG 128
H+ + +PG
Sbjct: 64 AHARRYGAEVRPG 76
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/232 (19%), Positives = 92/232 (39%), Gaps = 34/232 (14%)
Query: 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 315
+VE I+ ++ + +L+ G+ + L NG +D D+ + P L
Sbjct: 237 LVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGML-- 294
Query: 316 NWKEMAYFKRLEKLVGVPVINIHIWFDR---KLKNTYDHLLFSRSSLLSVYADMSLTCKE 372
E+ L+ + V N+ + F ++++ + SR+S ++ A + T K+
Sbjct: 295 --SELPAISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITA-CTWTNKK 351
Query: 373 YYNP---NQSMLELVFAPA--EEWISCSDSEIIDATMKELAKLF-----PDEISADQSKA 422
+ + +++L A E + SD++II+ +++L K+ P+ +
Sbjct: 352 WPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNINGEPEMTCVTRWHE 411
Query: 423 KIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEG 474
+ +YHV R + R S G Y+ G AS EG
Sbjct: 412 SMPQYHVGHKQR--------IKELREALASAYPGVYMTG--------ASFEG 447
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 60 VVIAGAGLAGLSTAKYLADAGHKPLLLE 87
+ I G G+AGLS A+ L AGH+ L +
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHLFD 32
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 23/77 (29%)
Query: 59 KVVIAGAGLAGLSTAKYLADAGHK-------------------PLLLEARDVLVGAYPNI 99
+++I G G AG AK++ DAG K P LL+ RD ++ +
Sbjct: 223 RIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRD----SFGMV 278
Query: 100 QNLFGELGINDRLQWKE 116
NLF ++ N+ L K+
Sbjct: 279 TNLFTDVITNEELLEKD 295
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 25 VDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPL 84
+D P D+DN + + + + VV+ G+G G+ A+ A AG K
Sbjct: 118 LDIPGKDLDNIY-LMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 85 LLEARDVLVGAY 96
+++ D +G Y
Sbjct: 177 VIDILDRPLGVY 188
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 25 VDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPL 84
+D P D+DN + + + + VV+ G+G G+ A+ A AG K
Sbjct: 118 LDIPGKDLDNIY-LMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT 176
Query: 85 LLEARDVLVGAY 96
+++ D +G Y
Sbjct: 177 VIDILDRPLGVY 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,499,104
Number of Sequences: 62578
Number of extensions: 666073
Number of successful extensions: 1999
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1859
Number of HSP's gapped (non-prelim): 153
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)