Query 010539
Match_columns 508
No_of_seqs 290 out of 3126
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 01:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 1.8E-53 3.9E-58 430.4 48.1 491 16-506 52-564 (567)
2 TIGR02731 phytoene_desat phyto 100.0 4.1E-43 8.9E-48 350.9 44.4 425 59-486 1-452 (453)
3 PLN02487 zeta-carotene desatur 100.0 3.8E-39 8.3E-44 321.4 44.5 432 56-495 74-558 (569)
4 TIGR02732 zeta_caro_desat caro 100.0 2.7E-39 5.9E-44 321.4 42.4 421 59-487 1-474 (474)
5 PRK07233 hypothetical protein; 100.0 7E-35 1.5E-39 291.5 39.7 404 59-491 1-432 (434)
6 PRK12416 protoporphyrinogen ox 100.0 2E-33 4.3E-38 281.9 34.0 400 58-490 2-461 (463)
7 TIGR00562 proto_IX_ox protopor 100.0 7.1E-33 1.5E-37 278.6 33.0 397 57-490 2-460 (462)
8 COG1232 HemY Protoporphyrinoge 100.0 2.6E-33 5.6E-38 267.5 26.2 388 58-487 1-443 (444)
9 PLN02576 protoporphyrinogen ox 100.0 9.2E-33 2E-37 279.8 31.8 405 54-491 9-488 (496)
10 COG3349 Uncharacterized conser 100.0 3E-33 6.5E-38 265.1 25.9 427 58-492 1-465 (485)
11 PRK11883 protoporphyrinogen ox 100.0 3.2E-32 7E-37 273.5 33.6 396 58-488 1-450 (451)
12 COG1231 Monoamine oxidase [Ami 100.0 1.3E-32 2.9E-37 255.4 25.4 407 55-491 5-448 (450)
13 PLN02268 probable polyamine ox 100.0 2.5E-32 5.4E-37 271.9 27.8 392 58-490 1-434 (435)
14 PRK07208 hypothetical protein; 100.0 2.2E-31 4.7E-36 268.5 34.3 404 56-489 3-460 (479)
15 TIGR03467 HpnE squalene-associ 100.0 1.3E-30 2.8E-35 259.7 38.8 394 71-487 1-418 (419)
16 PLN02676 polyamine oxidase 100.0 3.1E-31 6.8E-36 263.7 29.8 237 248-492 222-475 (487)
17 PLN02529 lysine-specific histo 100.0 8.1E-30 1.8E-34 259.3 33.3 395 55-493 158-601 (738)
18 PLN02568 polyamine oxidase 100.0 2.3E-30 5E-35 258.9 27.6 243 243-491 236-536 (539)
19 PLN02328 lysine-specific histo 100.0 1.6E-29 3.6E-34 258.0 32.6 245 240-496 428-685 (808)
20 KOG0029 Amine oxidase [Seconda 100.0 1.2E-29 2.5E-34 248.9 28.3 223 264-492 228-461 (501)
21 PLN03000 amine oxidase 100.0 1.7E-29 3.6E-34 257.4 29.8 241 240-493 372-626 (881)
22 PLN02976 amine oxidase 100.0 5.4E-29 1.2E-33 259.9 32.9 243 241-492 928-1188(1713)
23 TIGR02733 desat_CrtD C-3',4' d 100.0 3.7E-28 8E-33 245.4 37.8 408 58-488 2-490 (492)
24 TIGR02734 crtI_fam phytoene de 100.0 6.8E-28 1.5E-32 244.3 32.9 413 60-494 1-496 (502)
25 TIGR02730 carot_isom carotene 100.0 1.9E-27 4.1E-32 239.7 34.4 290 185-490 170-492 (493)
26 KOG0685 Flavin-containing amin 100.0 5.1E-27 1.1E-31 217.8 24.1 225 266-494 245-495 (498)
27 PF01593 Amino_oxidase: Flavin 99.9 2.9E-28 6.3E-33 245.0 9.4 230 252-487 211-450 (450)
28 KOG1276 Protoporphyrinogen oxi 99.9 1.6E-25 3.4E-30 204.4 22.9 402 56-487 10-490 (491)
29 KOG4254 Phytoene desaturase [C 99.9 1E-22 2.2E-27 186.8 28.1 249 236-493 251-549 (561)
30 COG1233 Phytoene dehydrogenase 99.9 7.3E-23 1.6E-27 204.4 24.1 402 56-489 2-482 (487)
31 COG2907 Predicted NAD/FAD-bind 99.9 9.6E-22 2.1E-26 174.7 19.9 262 56-340 7-303 (447)
32 COG3380 Predicted NAD/FAD-depe 99.9 2.1E-22 4.6E-27 173.0 12.7 218 255-490 109-331 (331)
33 PRK13977 myosin-cross-reactive 99.8 2E-17 4.3E-22 162.5 30.5 235 55-312 20-297 (576)
34 TIGR03329 Phn_aa_oxid putative 99.8 1.2E-17 2.5E-22 167.1 18.5 58 248-309 181-238 (460)
35 COG2081 Predicted flavoprotein 99.8 4.2E-17 9.2E-22 149.9 18.4 58 249-308 110-167 (408)
36 TIGR01373 soxB sarcosine oxida 99.7 5E-16 1.1E-20 153.6 22.0 202 248-488 181-384 (407)
37 PF01266 DAO: FAD dependent ox 99.7 7.5E-16 1.6E-20 150.1 18.8 61 248-310 145-205 (358)
38 KOG2820 FAD-dependent oxidored 99.7 4.4E-15 9.6E-20 132.3 18.4 65 249-313 152-217 (399)
39 PTZ00363 rab-GDP dissociation 99.7 9.6E-15 2.1E-19 142.6 22.0 248 55-306 2-288 (443)
40 PRK00711 D-amino acid dehydrog 99.7 7.4E-15 1.6E-19 145.9 19.9 60 248-309 199-258 (416)
41 PRK12409 D-amino acid dehydrog 99.6 3.5E-14 7.6E-19 140.6 22.8 60 248-309 195-259 (410)
42 PF03486 HI0933_like: HI0933-l 99.6 9.6E-15 2.1E-19 141.1 17.7 120 248-368 107-250 (409)
43 TIGR01377 soxA_mon sarcosine o 99.6 1.3E-13 2.8E-18 135.4 25.6 59 248-309 143-201 (380)
44 COG0665 DadA Glycine/D-amino a 99.6 3E-13 6.5E-18 133.2 27.2 61 248-311 154-215 (387)
45 PRK11259 solA N-methyltryptoph 99.6 6E-14 1.3E-18 137.6 21.6 59 248-309 147-205 (376)
46 PLN02464 glycerol-3-phosphate 99.6 1.6E-12 3.5E-17 133.7 27.5 61 248-308 230-296 (627)
47 PRK05714 2-octaprenyl-3-methyl 99.6 2.7E-12 5.7E-17 127.0 28.0 63 251-315 113-176 (405)
48 PRK08773 2-octaprenyl-3-methyl 99.6 5.7E-13 1.2E-17 131.2 23.0 62 250-313 113-175 (392)
49 PRK01747 mnmC bifunctional tRN 99.6 2.7E-13 5.8E-18 141.7 20.9 59 248-309 406-464 (662)
50 KOG2853 Possible oxidoreductas 99.6 2.4E-13 5.2E-18 121.2 17.2 211 248-488 241-481 (509)
51 PRK07045 putative monooxygenas 99.6 1.7E-12 3.6E-17 127.7 25.0 61 251-311 107-169 (388)
52 COG0644 FixC Dehydrogenases (f 99.6 2.2E-12 4.8E-17 126.5 25.6 64 250-314 95-159 (396)
53 PRK10157 putative oxidoreducta 99.5 4.7E-13 1E-17 132.4 20.7 56 251-308 109-164 (428)
54 PRK10015 oxidoreductase; Provi 99.5 3.4E-12 7.4E-17 126.1 25.9 56 251-308 109-164 (429)
55 PRK11101 glpA sn-glycerol-3-ph 99.5 1.8E-12 3.9E-17 131.8 23.6 61 248-309 147-212 (546)
56 PRK06847 hypothetical protein; 99.5 2.7E-12 6E-17 125.7 22.6 57 250-308 107-163 (375)
57 PLN02463 lycopene beta cyclase 99.5 9.3E-12 2E-16 122.4 26.0 57 249-308 113-169 (447)
58 TIGR03364 HpnW_proposed FAD de 99.5 3.5E-12 7.5E-17 124.4 23.0 59 248-314 143-202 (365)
59 PRK08020 ubiF 2-octaprenyl-3-m 99.5 5.1E-12 1.1E-16 124.5 24.3 62 251-314 113-176 (391)
60 PLN02697 lycopene epsilon cycl 99.5 2E-11 4.4E-16 121.9 28.5 57 250-308 192-248 (529)
61 TIGR01988 Ubi-OHases Ubiquinon 99.5 7.3E-12 1.6E-16 123.3 25.2 62 250-313 106-169 (385)
62 TIGR01984 UbiH 2-polyprenyl-6- 99.5 6.7E-12 1.5E-16 123.3 24.6 64 249-314 104-169 (382)
63 COG0579 Predicted dehydrogenas 99.5 3.2E-14 7E-19 135.8 7.4 87 248-345 151-240 (429)
64 PRK07608 ubiquinone biosynthes 99.5 1E-11 2.2E-16 122.3 25.4 63 249-314 110-174 (388)
65 PRK11728 hydroxyglutarate oxid 99.5 4.1E-13 8.9E-18 132.0 15.0 58 248-308 147-204 (393)
66 COG1635 THI4 Ribulose 1,5-bisp 99.5 3.4E-13 7.5E-18 113.2 12.0 138 56-307 29-177 (262)
67 PRK13369 glycerol-3-phosphate 99.5 3.2E-11 6.9E-16 121.9 28.3 60 248-309 153-216 (502)
68 PRK06185 hypothetical protein; 99.5 2.6E-11 5.7E-16 120.1 27.2 56 55-110 4-65 (407)
69 COG0654 UbiH 2-polyprenyl-6-me 99.5 2.6E-11 5.6E-16 118.8 26.8 63 250-314 104-169 (387)
70 PRK07364 2-octaprenyl-6-methox 99.5 3.5E-11 7.6E-16 119.6 28.1 55 56-110 17-79 (415)
71 PRK08850 2-octaprenyl-6-methox 99.5 1.8E-11 4E-16 120.9 25.6 56 56-111 3-69 (405)
72 PRK04176 ribulose-1,5-biphosph 99.5 3.6E-13 7.9E-18 122.7 11.6 60 249-308 103-173 (257)
73 PRK08849 2-octaprenyl-3-methyl 99.5 2.2E-11 4.9E-16 119.3 25.0 55 57-111 3-69 (384)
74 PRK07494 2-octaprenyl-6-methox 99.5 7E-12 1.5E-16 123.4 21.5 63 250-314 111-174 (388)
75 PRK07190 hypothetical protein; 99.5 3.2E-11 6.9E-16 120.9 26.4 61 252-314 111-172 (487)
76 PRK08243 4-hydroxybenzoate 3-m 99.5 3.3E-11 7.2E-16 118.5 25.9 54 57-110 2-63 (392)
77 PRK08013 oxidoreductase; Provi 99.5 9.2E-11 2E-15 115.6 29.1 62 251-314 112-175 (400)
78 PRK07333 2-octaprenyl-6-methox 99.5 3.5E-11 7.6E-16 119.1 26.1 63 250-314 111-174 (403)
79 PRK06184 hypothetical protein; 99.5 1.2E-11 2.6E-16 125.5 23.2 55 56-110 2-62 (502)
80 TIGR02032 GG-red-SF geranylger 99.5 2E-11 4.4E-16 115.5 23.4 62 250-313 91-154 (295)
81 PRK09126 hypothetical protein; 99.5 1.1E-11 2.3E-16 122.2 22.1 56 56-111 2-68 (392)
82 PF06100 Strep_67kDa_ant: Stre 99.5 4.1E-11 9E-16 114.5 24.8 236 57-312 2-278 (500)
83 COG0578 GlpA Glycerol-3-phosph 99.5 2.5E-12 5.5E-17 125.4 16.7 70 240-311 153-228 (532)
84 TIGR00292 thiazole biosynthesi 99.4 1.4E-12 3.1E-17 118.3 13.9 64 250-313 100-176 (254)
85 PRK12266 glpD glycerol-3-phosp 99.4 2.3E-11 5E-16 122.8 23.9 60 248-309 153-217 (508)
86 PRK06183 mhpA 3-(3-hydroxyphen 99.4 5.4E-11 1.2E-15 121.7 27.0 57 55-111 8-70 (538)
87 PRK06834 hypothetical protein; 99.4 1.4E-11 3.1E-16 123.6 22.1 62 251-314 101-163 (488)
88 PRK08244 hypothetical protein; 99.4 3.5E-11 7.7E-16 121.9 25.2 54 57-110 2-61 (493)
89 TIGR01790 carotene-cycl lycope 99.4 6.4E-11 1.4E-15 116.6 26.2 58 249-308 84-141 (388)
90 PRK07588 hypothetical protein; 99.4 1.5E-11 3.2E-16 121.1 21.1 59 251-312 104-163 (391)
91 TIGR00031 UDP-GALP_mutase UDP- 99.4 1.1E-11 2.4E-16 118.3 19.4 113 185-310 129-249 (377)
92 PF01494 FAD_binding_3: FAD bi 99.4 4.4E-12 9.6E-17 123.5 17.1 53 58-110 2-60 (356)
93 PLN00093 geranylgeranyl diphos 99.4 7.2E-11 1.6E-15 116.9 25.6 39 52-90 34-72 (450)
94 PTZ00383 malate:quinone oxidor 99.4 4.9E-13 1.1E-17 132.7 9.9 62 248-311 209-276 (497)
95 PRK06617 2-octaprenyl-6-methox 99.4 7.3E-11 1.6E-15 115.2 24.4 62 250-314 104-167 (374)
96 PRK05732 2-octaprenyl-6-methox 99.4 1.1E-10 2.4E-15 115.3 25.2 55 252-308 114-169 (395)
97 PRK06126 hypothetical protein; 99.4 7.5E-11 1.6E-15 121.1 24.4 57 55-111 5-67 (545)
98 PRK08132 FAD-dependent oxidore 99.4 1.9E-10 4.2E-15 118.0 27.3 59 53-111 19-83 (547)
99 PRK11445 putative oxidoreducta 99.4 9.9E-11 2.1E-15 113.1 23.7 52 57-109 1-62 (351)
100 TIGR01989 COQ6 Ubiquinone bios 99.4 2E-10 4.4E-15 114.4 25.8 64 251-314 118-190 (437)
101 PRK05192 tRNA uridine 5-carbox 99.4 7.4E-11 1.6E-15 117.8 21.8 60 249-310 99-159 (618)
102 PF01946 Thi4: Thi4 family; PD 99.4 2.8E-12 6.2E-17 108.7 9.6 59 249-307 95-164 (230)
103 PRK06996 hypothetical protein; 99.4 3.8E-10 8.3E-15 111.1 26.2 63 250-314 115-182 (398)
104 KOG2844 Dimethylglycine dehydr 99.4 2.2E-12 4.7E-17 125.0 8.7 87 215-308 155-243 (856)
105 TIGR02023 BchP-ChlP geranylger 99.4 4.4E-10 9.6E-15 110.3 25.3 32 58-89 1-32 (388)
106 TIGR02360 pbenz_hydroxyl 4-hyd 99.3 4.7E-10 1E-14 110.0 24.1 55 57-111 2-64 (390)
107 TIGR02028 ChlP geranylgeranyl 99.3 6.3E-10 1.4E-14 109.2 24.8 34 58-91 1-34 (398)
108 PRK07121 hypothetical protein; 99.3 8.2E-11 1.8E-15 119.0 19.1 60 249-308 176-239 (492)
109 PRK05868 hypothetical protein; 99.3 6.4E-10 1.4E-14 108.2 24.3 53 57-109 1-59 (372)
110 PRK06481 fumarate reductase fl 99.3 9.1E-11 2E-15 118.6 18.9 57 250-307 190-250 (506)
111 PRK08294 phenol 2-monooxygenas 99.3 1.7E-09 3.7E-14 111.8 27.5 57 55-111 30-93 (634)
112 PRK08274 tricarballylate dehyd 99.3 1.1E-10 2.5E-15 117.4 16.5 58 249-307 130-191 (466)
113 PRK07573 sdhA succinate dehydr 99.3 2.9E-10 6.4E-15 117.4 19.5 54 254-308 174-232 (640)
114 PLN02985 squalene monooxygenas 99.3 1.9E-09 4.1E-14 108.6 24.8 58 54-111 40-103 (514)
115 TIGR01813 flavo_cyto_c flavocy 99.3 7.5E-11 1.6E-15 117.8 14.4 59 250-308 130-192 (439)
116 PRK08163 salicylate hydroxylas 99.3 5.8E-11 1.2E-15 117.3 13.3 55 56-110 3-63 (396)
117 PRK06475 salicylate hydroxylas 99.3 1.3E-09 2.8E-14 107.5 22.5 53 58-110 3-61 (400)
118 PRK08958 sdhA succinate dehydr 99.3 4.5E-10 9.7E-15 115.1 19.7 59 250-308 143-206 (588)
119 PLN02661 Putative thiazole syn 99.2 1.1E-10 2.3E-15 108.8 13.5 40 55-94 90-130 (357)
120 PRK07538 hypothetical protein; 99.2 3.1E-09 6.8E-14 105.3 24.7 53 58-110 1-59 (413)
121 PF13738 Pyr_redox_3: Pyridine 99.2 2.8E-11 6E-16 107.6 8.9 56 251-308 83-138 (203)
122 TIGR00136 gidA glucose-inhibit 99.2 8.2E-10 1.8E-14 110.2 19.9 60 249-309 95-155 (617)
123 PRK07804 L-aspartate oxidase; 99.2 4.5E-10 9.8E-15 114.3 18.6 59 250-308 144-210 (541)
124 PRK13339 malate:quinone oxidor 99.2 2.2E-10 4.8E-15 113.5 15.8 62 248-310 182-249 (497)
125 PTZ00139 Succinate dehydrogena 99.2 4.4E-10 9.6E-15 115.7 18.4 59 250-308 166-229 (617)
126 TIGR01320 mal_quin_oxido malat 99.2 3.3E-11 7.2E-16 120.2 9.6 62 248-310 176-242 (483)
127 PLN00128 Succinate dehydrogena 99.2 4.5E-10 9.8E-15 115.6 18.1 59 250-308 187-250 (635)
128 PF05834 Lycopene_cycl: Lycope 99.2 2.6E-09 5.5E-14 104.0 22.5 56 250-308 87-142 (374)
129 PRK09078 sdhA succinate dehydr 99.2 3.5E-10 7.5E-15 116.3 17.2 59 250-308 149-212 (598)
130 PRK06175 L-aspartate oxidase; 99.2 4E-10 8.7E-15 111.5 17.0 57 250-307 128-188 (433)
131 PRK05257 malate:quinone oxidor 99.2 6.2E-11 1.3E-15 118.3 11.3 63 248-311 181-249 (494)
132 PRK07057 sdhA succinate dehydr 99.2 9.6E-10 2.1E-14 112.9 19.2 59 250-308 148-211 (591)
133 PF00890 FAD_binding_2: FAD bi 99.2 1.4E-10 3E-15 115.4 12.7 59 250-309 141-204 (417)
134 PRK07236 hypothetical protein; 99.2 3.1E-10 6.7E-15 111.4 14.6 56 55-110 4-66 (386)
135 PRK06452 sdhA succinate dehydr 99.2 1E-09 2.2E-14 112.2 17.7 58 250-308 136-198 (566)
136 PRK07395 L-aspartate oxidase; 99.2 5.1E-10 1.1E-14 113.7 15.0 58 250-307 134-196 (553)
137 PLN02815 L-aspartate oxidase 99.2 1E-09 2.2E-14 112.1 17.1 59 250-308 155-222 (594)
138 PLN02172 flavin-containing mon 99.2 3.8E-10 8.3E-15 111.9 13.1 43 55-97 8-50 (461)
139 TIGR03378 glycerol3P_GlpB glyc 99.2 4.7E-10 1E-14 107.5 13.1 81 233-314 242-328 (419)
140 PRK08401 L-aspartate oxidase; 99.1 8.1E-10 1.8E-14 110.6 15.3 57 250-309 120-176 (466)
141 PRK12845 3-ketosteroid-delta-1 99.1 1.9E-09 4.2E-14 109.7 17.9 58 250-308 217-278 (564)
142 COG2072 TrkA Predicted flavopr 99.1 9.2E-10 2E-14 108.7 15.0 45 54-98 5-50 (443)
143 TIGR01292 TRX_reduct thioredox 99.1 3.4E-10 7.3E-15 107.4 11.6 52 254-308 61-112 (300)
144 PLN02927 antheraxanthin epoxid 99.1 6.6E-09 1.4E-13 105.9 21.2 36 55-90 79-114 (668)
145 PF04820 Trp_halogenase: Trypt 99.1 4.9E-10 1.1E-14 111.1 12.8 59 249-308 153-211 (454)
146 COG3075 GlpB Anaerobic glycero 99.1 1.2E-09 2.5E-14 97.8 13.4 82 233-315 237-324 (421)
147 PRK08205 sdhA succinate dehydr 99.1 2.5E-09 5.5E-14 109.9 18.0 59 250-308 140-206 (583)
148 PRK12835 3-ketosteroid-delta-1 99.1 5.4E-09 1.2E-13 107.2 20.2 59 250-308 213-275 (584)
149 TIGR01812 sdhA_frdA_Gneg succi 99.1 2.4E-09 5.2E-14 110.2 17.7 58 250-308 129-191 (566)
150 TIGR02352 thiamin_ThiO glycine 99.1 2.8E-09 6E-14 102.9 17.2 201 248-488 135-335 (337)
151 PRK12844 3-ketosteroid-delta-1 99.1 1.8E-09 4E-14 110.1 16.5 58 250-308 208-269 (557)
152 PRK07803 sdhA succinate dehydr 99.1 2.8E-09 6.2E-14 110.1 18.0 39 56-94 7-45 (626)
153 PRK05945 sdhA succinate dehydr 99.1 2.2E-09 4.7E-14 110.3 17.1 58 250-308 135-197 (575)
154 PRK12839 hypothetical protein; 99.1 3.4E-09 7.3E-14 108.2 17.9 60 249-308 213-276 (572)
155 TIGR00551 nadB L-aspartate oxi 99.1 1.8E-09 3.9E-14 108.9 15.6 58 250-308 128-189 (488)
156 KOG2614 Kynurenine 3-monooxyge 99.1 5E-09 1.1E-13 97.4 17.1 39 57-95 2-40 (420)
157 PRK06134 putative FAD-binding 99.1 5.5E-09 1.2E-13 107.4 19.2 59 249-308 216-278 (581)
158 PRK06069 sdhA succinate dehydr 99.1 3.6E-09 7.8E-14 108.8 17.5 58 250-308 137-200 (577)
159 TIGR00275 flavoprotein, HI0933 99.1 1.1E-09 2.5E-14 107.3 13.1 57 249-308 104-160 (400)
160 PRK08275 putative oxidoreducta 99.1 4.7E-09 1E-13 107.4 18.0 58 251-308 138-200 (554)
161 PF00996 GDI: GDP dissociation 99.1 1.7E-08 3.8E-13 97.6 20.5 241 55-302 2-283 (438)
162 TIGR01811 sdhA_Bsu succinate d 99.1 5E-09 1.1E-13 107.7 17.8 58 250-307 129-195 (603)
163 PRK08626 fumarate reductase fl 99.1 2.5E-09 5.5E-14 110.8 15.5 57 251-308 159-220 (657)
164 PRK05329 anaerobic glycerol-3- 99.1 1.7E-09 3.6E-14 105.3 13.2 78 235-313 240-323 (422)
165 PRK06263 sdhA succinate dehydr 99.1 2.3E-09 5.1E-14 109.5 15.0 59 250-308 134-197 (543)
166 PTZ00367 squalene epoxidase; P 99.1 3.9E-08 8.5E-13 99.7 23.6 55 56-110 32-93 (567)
167 PRK05249 soluble pyridine nucl 99.1 1.5E-09 3.2E-14 109.3 13.2 61 250-312 216-276 (461)
168 PRK08641 sdhA succinate dehydr 99.1 2.8E-09 6E-14 109.5 15.3 59 250-308 133-200 (589)
169 TIGR02485 CobZ_N-term precorri 99.1 3.7E-09 8E-14 105.3 15.7 57 250-306 123-181 (432)
170 PRK06753 hypothetical protein; 99.1 1.6E-09 3.5E-14 106.1 12.5 52 58-109 1-58 (373)
171 PRK08071 L-aspartate oxidase; 99.0 4.7E-09 1E-13 106.1 15.6 57 250-308 130-190 (510)
172 PRK06854 adenylylsulfate reduc 99.0 4.2E-09 9.1E-14 108.5 15.4 58 250-308 132-195 (608)
173 PRK07512 L-aspartate oxidase; 99.0 5.3E-09 1.2E-13 105.8 15.8 59 249-308 135-197 (513)
174 PRK12842 putative succinate de 99.0 7.5E-09 1.6E-13 106.4 17.0 58 250-308 214-275 (574)
175 PRK09231 fumarate reductase fl 99.0 1E-08 2.3E-13 105.1 17.7 58 250-308 133-196 (582)
176 PRK15317 alkyl hydroperoxide r 99.0 1.8E-09 3.9E-14 109.7 11.6 56 251-308 267-322 (517)
177 PRK12843 putative FAD-binding 99.0 1.5E-08 3.3E-13 104.1 18.5 60 249-309 220-283 (578)
178 PF13450 NAD_binding_8: NAD(P) 99.0 5.6E-10 1.2E-14 78.6 5.5 36 62-97 1-36 (68)
179 TIGR03140 AhpF alkyl hydropero 99.0 1.9E-09 4.1E-14 109.4 11.6 55 252-308 269-323 (515)
180 PRK07843 3-ketosteroid-delta-1 99.0 7.8E-09 1.7E-13 105.7 16.1 56 251-307 209-268 (557)
181 TIGR03219 salicylate_mono sali 99.0 3.1E-09 6.7E-14 105.4 12.5 53 58-110 1-60 (414)
182 KOG0042 Glycerol-3-phosphate d 99.0 2.3E-09 5E-14 102.0 10.7 99 237-345 211-316 (680)
183 COG2509 Uncharacterized FAD-de 99.0 2.3E-07 5E-12 87.5 23.6 57 250-307 173-229 (486)
184 TIGR01176 fum_red_Fp fumarate 99.0 1.3E-08 2.7E-13 104.3 16.8 58 250-308 132-195 (580)
185 PF12831 FAD_oxidored: FAD dep 99.0 6.8E-10 1.5E-14 109.8 7.4 65 249-314 89-156 (428)
186 PF00070 Pyr_redox: Pyridine n 99.0 5.9E-09 1.3E-13 76.8 10.4 34 59-92 1-34 (80)
187 PF01134 GIDA: Glucose inhibit 99.0 7.5E-09 1.6E-13 98.2 13.2 57 250-308 95-152 (392)
188 PF00743 FMO-like: Flavin-bind 99.0 3.3E-09 7.2E-14 106.7 11.5 40 58-97 2-41 (531)
189 TIGR03197 MnmC_Cterm tRNA U-34 99.0 1E-08 2.2E-13 100.6 14.3 60 248-310 133-192 (381)
190 PTZ00306 NADH-dependent fumara 99.0 1.5E-08 3.3E-13 111.8 17.2 41 55-95 407-447 (1167)
191 TIGR01424 gluta_reduc_2 glutat 99.0 6.2E-09 1.3E-13 104.0 12.9 40 57-97 2-41 (446)
192 PRK12837 3-ketosteroid-delta-1 99.0 2.7E-08 5.9E-13 100.9 17.7 40 55-95 5-44 (513)
193 KOG2852 Possible oxidoreductas 99.0 4.9E-09 1.1E-13 92.0 10.3 49 56-104 9-63 (380)
194 COG0492 TrxB Thioredoxin reduc 99.0 4.6E-09 1E-13 97.6 10.8 60 251-314 62-121 (305)
195 TIGR01421 gluta_reduc_1 glutat 99.0 2.1E-08 4.6E-13 100.1 16.3 62 250-312 207-269 (450)
196 PF13454 NAD_binding_9: FAD-NA 99.0 3E-08 6.4E-13 83.5 14.6 48 256-306 107-155 (156)
197 PRK12834 putative FAD-binding 98.9 2E-08 4.3E-13 102.8 15.9 40 56-95 3-44 (549)
198 PF06039 Mqo: Malate:quinone o 98.9 7.3E-09 1.6E-13 98.2 11.3 90 248-344 179-274 (488)
199 COG1249 Lpd Pyruvate/2-oxoglut 98.9 1.2E-07 2.5E-12 92.9 19.7 43 56-98 3-45 (454)
200 PRK09077 L-aspartate oxidase; 98.9 1.6E-08 3.5E-13 103.0 14.4 59 250-308 138-207 (536)
201 COG0029 NadB Aspartate oxidase 98.9 4.6E-08 9.9E-13 93.2 16.2 58 249-306 132-194 (518)
202 TIGR03143 AhpF_homolog putativ 98.9 6.7E-09 1.5E-13 106.2 11.3 35 56-90 3-37 (555)
203 PRK12831 putative oxidoreducta 98.9 1.7E-08 3.7E-13 100.8 13.8 42 54-95 137-178 (464)
204 TIGR02061 aprA adenosine phosp 98.9 5.4E-08 1.2E-12 99.5 17.4 58 251-308 127-191 (614)
205 PRK12779 putative bifunctional 98.9 2.2E-08 4.7E-13 107.4 15.2 41 55-95 304-344 (944)
206 KOG1335 Dihydrolipoamide dehyd 98.9 4E-08 8.8E-13 89.9 14.2 80 234-314 230-320 (506)
207 KOG2415 Electron transfer flav 98.9 9.2E-08 2E-12 88.5 16.5 57 250-306 183-254 (621)
208 PRK08010 pyridine nucleotide-d 98.9 6.6E-09 1.4E-13 103.8 10.1 59 250-311 199-257 (441)
209 TIGR01316 gltA glutamate synth 98.9 1.3E-07 2.8E-12 94.4 19.0 42 54-95 130-171 (449)
210 PRK06467 dihydrolipoamide dehy 98.9 6.2E-08 1.3E-12 97.3 16.5 42 56-97 3-44 (471)
211 PRK06116 glutathione reductase 98.9 3.7E-08 8.1E-13 98.7 14.8 41 56-97 3-43 (450)
212 TIGR01789 lycopene_cycl lycope 98.9 1.4E-07 2.9E-12 91.5 17.4 36 59-94 1-38 (370)
213 COG1252 Ndh NADH dehydrogenase 98.9 6.5E-08 1.4E-12 92.3 14.7 53 249-307 208-261 (405)
214 PF00732 GMC_oxred_N: GMC oxid 98.9 1.1E-07 2.4E-12 89.8 16.4 37 58-94 1-38 (296)
215 PRK06115 dihydrolipoamide dehy 98.8 2.5E-08 5.3E-13 100.1 12.2 42 56-97 2-43 (466)
216 PRK05976 dihydrolipoamide dehy 98.8 3.3E-08 7.1E-13 99.6 13.0 41 56-97 3-43 (472)
217 KOG1399 Flavin-containing mono 98.8 2.6E-08 5.6E-13 97.0 11.7 42 56-97 5-46 (448)
218 COG0562 Glf UDP-galactopyranos 98.8 1.2E-08 2.7E-13 91.2 8.4 40 57-96 1-40 (374)
219 PTZ00058 glutathione reductase 98.8 8.2E-08 1.8E-12 97.4 14.6 43 55-98 46-88 (561)
220 PRK06416 dihydrolipoamide dehy 98.8 1.2E-07 2.7E-12 95.3 15.8 42 56-98 3-44 (462)
221 PRK06327 dihydrolipoamide dehy 98.8 1.7E-07 3.6E-12 94.5 16.5 33 56-88 3-35 (475)
222 PLN02546 glutathione reductase 98.8 2.1E-07 4.7E-12 94.4 16.4 33 56-88 78-110 (558)
223 PRK12769 putative oxidoreducta 98.8 2.1E-07 4.6E-12 97.3 16.9 41 55-95 325-365 (654)
224 PRK06370 mercuric reductase; V 98.8 2E-07 4.3E-12 93.8 16.0 42 55-97 3-44 (463)
225 PRK09897 hypothetical protein; 98.8 1.3E-07 2.8E-12 94.8 14.5 52 253-306 110-164 (534)
226 PLN02507 glutathione reductase 98.8 2.3E-07 5E-12 93.6 16.0 34 55-88 23-56 (499)
227 KOG2404 Fumarate reductase, fl 98.8 1E-07 2.2E-12 85.2 11.6 59 250-309 139-207 (477)
228 PRK12778 putative bifunctional 98.8 8.3E-08 1.8E-12 102.0 13.3 41 55-95 429-469 (752)
229 PRK12775 putative trifunctiona 98.8 1.8E-07 3.9E-12 101.4 16.0 40 56-95 429-468 (1006)
230 KOG1298 Squalene monooxygenase 98.7 2.2E-07 4.8E-12 85.2 13.7 36 54-89 42-77 (509)
231 PRK13800 putative oxidoreducta 98.7 2.9E-07 6.3E-12 99.5 17.2 36 56-91 12-47 (897)
232 PRK10262 thioredoxin reductase 98.7 5.7E-08 1.2E-12 92.8 10.4 35 56-90 5-39 (321)
233 PRK11749 dihydropyrimidine deh 98.7 3.9E-07 8.5E-12 91.4 16.7 40 55-94 138-177 (457)
234 COG1249 Lpd Pyruvate/2-oxoglut 98.7 2E-07 4.4E-12 91.3 13.6 54 253-308 217-272 (454)
235 PRK09754 phenylpropionate diox 98.7 1.6E-07 3.5E-12 92.4 13.1 54 256-312 192-245 (396)
236 PF07992 Pyr_redox_2: Pyridine 98.7 5.9E-08 1.3E-12 86.0 9.0 32 59-90 1-32 (201)
237 PRK08255 salicylyl-CoA 5-hydro 98.7 1E-06 2.2E-11 93.7 19.6 35 58-92 1-37 (765)
238 TIGR01318 gltD_gamma_fam gluta 98.7 7.5E-08 1.6E-12 96.4 10.5 41 55-95 139-179 (467)
239 TIGR01350 lipoamide_DH dihydro 98.7 3.6E-07 7.7E-12 92.1 15.5 40 57-97 1-40 (461)
240 TIGR01372 soxA sarcosine oxida 98.7 3.8E-07 8.2E-12 99.5 16.0 69 240-312 343-415 (985)
241 PRK07251 pyridine nucleotide-d 98.7 2.4E-07 5.2E-12 92.6 13.5 41 56-96 2-43 (438)
242 PRK14989 nitrite reductase sub 98.7 1.6E-07 3.5E-12 99.8 12.8 56 255-310 192-247 (847)
243 PRK12810 gltD glutamate syntha 98.7 5.1E-07 1.1E-11 90.8 15.7 42 54-95 140-181 (471)
244 PRK12809 putative oxidoreducta 98.7 9.2E-08 2E-12 99.6 10.6 41 55-95 308-348 (639)
245 PRK09853 putative selenate red 98.7 5.8E-08 1.3E-12 102.8 8.9 40 55-94 537-576 (1019)
246 PRK14694 putative mercuric red 98.7 2.3E-07 5E-12 93.4 12.9 42 55-97 4-45 (468)
247 PRK06292 dihydrolipoamide dehy 98.7 1.7E-07 3.6E-12 94.4 12.0 41 56-97 2-42 (460)
248 TIGR02374 nitri_red_nirB nitri 98.7 2E-07 4.3E-12 99.2 12.6 51 256-308 188-238 (785)
249 PRK07845 flavoprotein disulfid 98.6 2.9E-07 6.3E-12 92.4 12.8 39 57-96 1-39 (466)
250 PRK04965 NADH:flavorubredoxin 98.6 3.8E-07 8.2E-12 89.3 12.6 51 256-308 189-239 (377)
251 KOG1336 Monodehydroascorbate/f 98.6 2.7E-07 5.9E-12 87.6 10.3 61 254-314 259-319 (478)
252 PRK09754 phenylpropionate diox 98.6 3.5E-07 7.6E-12 90.0 11.6 45 260-308 68-112 (396)
253 PRK07818 dihydrolipoamide dehy 98.6 8E-07 1.7E-11 89.5 13.7 40 57-97 4-43 (466)
254 PRK06370 mercuric reductase; V 98.6 1.2E-06 2.6E-11 88.1 14.3 35 58-92 172-206 (463)
255 PRK09564 coenzyme A disulfide 98.5 2.7E-07 5.8E-12 92.6 9.1 35 58-92 1-37 (444)
256 TIGR02462 pyranose_ox pyranose 98.5 1.8E-06 3.9E-11 86.6 14.6 37 58-94 1-37 (544)
257 PRK13748 putative mercuric red 98.5 3.4E-07 7.5E-12 94.6 9.9 42 56-98 97-138 (561)
258 COG1053 SdhA Succinate dehydro 98.5 2.1E-06 4.5E-11 86.7 14.9 41 55-95 4-44 (562)
259 PTZ00318 NADH dehydrogenase-li 98.5 5.8E-07 1.3E-11 89.2 10.9 39 54-92 7-45 (424)
260 PRK09564 coenzyme A disulfide 98.5 1.1E-06 2.4E-11 88.2 12.9 51 255-308 196-246 (444)
261 TIGR02053 MerA mercuric reduct 98.5 1.7E-06 3.6E-11 87.2 14.1 35 58-92 167-201 (463)
262 TIGR02053 MerA mercuric reduct 98.5 4.9E-07 1.1E-11 91.0 10.1 38 58-96 1-38 (463)
263 KOG2665 Predicted FAD-dependen 98.5 1E-06 2.2E-11 78.7 10.6 60 249-308 195-257 (453)
264 PRK02106 choline dehydrogenase 98.5 1.9E-06 4.1E-11 88.8 14.5 36 56-91 4-40 (560)
265 TIGR01810 betA choline dehydro 98.5 2.9E-06 6.2E-11 86.9 15.2 55 253-308 196-255 (532)
266 PRK14989 nitrite reductase sub 98.5 6.8E-07 1.5E-11 95.2 10.9 47 258-308 67-113 (847)
267 PRK07251 pyridine nucleotide-d 98.5 1.8E-06 3.9E-11 86.3 13.3 35 58-92 158-192 (438)
268 COG3573 Predicted oxidoreducta 98.5 2.4E-06 5.1E-11 77.1 12.3 37 56-92 4-40 (552)
269 TIGR03385 CoA_CoA_reduc CoA-di 98.5 1.4E-06 3E-11 86.9 12.3 49 256-308 185-233 (427)
270 PRK07845 flavoprotein disulfid 98.5 2.2E-06 4.8E-11 86.2 13.3 54 256-311 224-277 (466)
271 PTZ00052 thioredoxin reductase 98.5 2.1E-06 4.6E-11 86.8 13.1 32 57-88 5-36 (499)
272 PRK04965 NADH:flavorubredoxin 98.5 2.2E-06 4.8E-11 83.9 12.8 46 258-308 66-111 (377)
273 TIGR01423 trypano_reduc trypan 98.4 4.6E-06 9.9E-11 83.8 15.1 43 56-98 2-53 (486)
274 PRK05976 dihydrolipoamide dehy 98.4 2.1E-06 4.6E-11 86.6 12.9 54 256-309 227-282 (472)
275 PRK12771 putative glutamate sy 98.4 1.5E-05 3.3E-10 82.2 19.3 41 55-95 135-175 (564)
276 TIGR02374 nitri_red_nirB nitri 98.4 7.6E-07 1.6E-11 94.8 9.9 47 258-308 62-108 (785)
277 PTZ00153 lipoamide dehydrogena 98.4 2.7E-06 5.9E-11 87.7 13.2 41 56-96 115-156 (659)
278 PRK13512 coenzyme A disulfide 98.4 1.6E-06 3.6E-11 86.4 11.0 35 58-92 2-38 (438)
279 COG0445 GidA Flavin-dependent 98.4 5.5E-07 1.2E-11 86.9 7.2 56 255-312 105-162 (621)
280 PRK13984 putative oxidoreducta 98.4 8.3E-06 1.8E-10 84.9 16.5 42 54-95 280-321 (604)
281 TIGR03169 Nterm_to_SelD pyridi 98.4 9.5E-07 2.1E-11 86.1 9.0 49 256-309 60-108 (364)
282 PRK06912 acoL dihydrolipoamide 98.4 3.6E-06 7.7E-11 84.6 12.9 37 59-96 2-38 (458)
283 PRK06416 dihydrolipoamide dehy 98.4 2.5E-06 5.4E-11 85.9 11.9 55 256-312 219-276 (462)
284 TIGR01438 TGR thioredoxin and 98.4 8.7E-06 1.9E-10 82.0 15.6 33 57-89 2-34 (484)
285 TIGR01350 lipoamide_DH dihydro 98.4 2.8E-06 6E-11 85.7 12.1 51 256-308 217-269 (461)
286 PRK07846 mycothione reductase; 98.4 4.4E-06 9.6E-11 83.5 13.0 50 262-313 218-267 (451)
287 PRK06912 acoL dihydrolipoamide 98.4 5.4E-06 1.2E-10 83.3 13.6 35 58-92 171-205 (458)
288 COG4716 Myosin-crossreactive a 98.4 2.3E-06 4.9E-11 78.4 9.4 226 56-306 21-290 (587)
289 PRK06116 glutathione reductase 98.3 5.2E-06 1.1E-10 83.3 12.8 53 256-309 214-266 (450)
290 PLN02507 glutathione reductase 98.3 4.3E-06 9.4E-11 84.5 12.2 55 256-312 250-304 (499)
291 TIGR01424 gluta_reduc_2 glutat 98.3 4.6E-06 9.9E-11 83.5 12.2 51 256-308 213-263 (446)
292 PRK07818 dihydrolipoamide dehy 98.3 5.4E-06 1.2E-10 83.5 12.6 35 58-92 173-207 (466)
293 PRK06115 dihydrolipoamide dehy 98.3 7.4E-06 1.6E-10 82.4 13.0 36 57-92 174-209 (466)
294 TIGR03377 glycerol3P_GlpA glyc 98.3 4.9E-05 1.1E-09 77.6 18.7 62 248-310 126-192 (516)
295 PRK07846 mycothione reductase; 98.3 3.5E-06 7.7E-11 84.2 10.1 39 448-488 286-324 (451)
296 PTZ00058 glutathione reductase 98.3 8.1E-06 1.8E-10 83.0 12.8 36 57-92 237-272 (561)
297 COG4529 Uncharacterized protei 98.3 1.1E-05 2.4E-10 77.5 12.6 39 57-95 1-42 (474)
298 TIGR01423 trypano_reduc trypan 98.3 9.5E-06 2E-10 81.5 12.8 57 255-312 236-292 (486)
299 PRK12770 putative glutamate sy 98.3 1.2E-06 2.5E-11 84.9 6.1 39 56-94 17-55 (352)
300 PF13434 K_oxygenase: L-lysine 98.3 7.2E-06 1.6E-10 78.2 11.4 36 57-92 2-38 (341)
301 PLN02785 Protein HOTHEAD 98.3 3.4E-05 7.3E-10 79.2 16.7 37 54-91 52-88 (587)
302 TIGR03452 mycothione_red mycot 98.2 1.6E-05 3.5E-10 79.6 13.7 39 448-488 289-327 (452)
303 PRK14727 putative mercuric red 98.2 1.9E-05 4.2E-10 79.7 14.3 54 256-312 234-287 (479)
304 PRK13512 coenzyme A disulfide 98.2 9.1E-06 2E-10 81.1 11.4 47 256-308 195-241 (438)
305 PRK14694 putative mercuric red 98.2 3E-05 6.6E-10 78.1 15.1 55 256-313 224-278 (468)
306 KOG1439 RAB proteins geranylge 98.2 1.9E-05 4.2E-10 73.3 12.0 62 240-303 223-284 (440)
307 PRK06327 dihydrolipoamide dehy 98.2 1.2E-05 2.7E-10 81.0 11.8 35 58-92 184-218 (475)
308 KOG0405 Pyridine nucleotide-di 98.2 8.4E-07 1.8E-11 80.4 3.0 57 250-307 230-286 (478)
309 TIGR03315 Se_ygfK putative sel 98.2 2E-06 4.4E-11 91.8 5.8 41 56-96 536-576 (1012)
310 PRK06467 dihydrolipoamide dehy 98.2 2.8E-05 6.1E-10 78.3 13.4 35 58-92 175-209 (471)
311 PTZ00318 NADH dehydrogenase-li 98.2 1.7E-05 3.7E-10 78.8 11.5 47 255-307 233-279 (424)
312 PLN02852 ferredoxin-NADP+ redu 98.2 3E-06 6.4E-11 84.2 6.0 41 55-95 24-66 (491)
313 PTZ00153 lipoamide dehydrogena 98.1 2.9E-05 6.3E-10 80.2 13.2 35 58-92 313-347 (659)
314 COG0446 HcaD Uncharacterized N 98.1 2.3E-05 5E-10 78.0 12.3 53 255-308 183-237 (415)
315 COG2303 BetA Choline dehydroge 98.1 2E-05 4.2E-10 80.3 11.5 37 55-91 5-41 (542)
316 COG1148 HdrA Heterodisulfide r 98.1 4.4E-06 9.6E-11 79.2 6.2 45 56-100 123-167 (622)
317 PRK13748 putative mercuric red 98.1 4.4E-05 9.5E-10 79.0 14.2 54 256-312 316-369 (561)
318 PTZ00052 thioredoxin reductase 98.1 3.8E-05 8.2E-10 77.8 13.0 57 255-313 227-283 (499)
319 PRK05335 tRNA (uracil-5-)-meth 98.1 3.6E-06 7.9E-11 80.9 5.2 36 57-92 2-37 (436)
320 TIGR01438 TGR thioredoxin and 98.1 2.8E-05 6.2E-10 78.3 11.5 55 256-312 226-283 (484)
321 TIGR03452 mycothione_red mycot 98.1 3.3E-05 7.1E-10 77.4 11.9 50 262-313 221-270 (452)
322 KOG3923 D-aspartate oxidase [A 98.1 1.5E-05 3.3E-10 71.0 8.0 71 249-347 150-220 (342)
323 PLN02546 glutathione reductase 98.1 4.9E-05 1.1E-09 77.5 12.7 55 256-311 299-353 (558)
324 PRK06567 putative bifunctional 98.0 7E-06 1.5E-10 86.3 5.7 38 53-90 379-416 (1028)
325 TIGR03140 AhpF alkyl hydropero 98.0 5.5E-05 1.2E-09 77.1 11.3 34 57-90 352-385 (515)
326 PRK10262 thioredoxin reductase 98.0 6.4E-05 1.4E-09 71.9 11.0 35 56-90 145-179 (321)
327 COG3634 AhpF Alkyl hydroperoxi 98.0 1.6E-05 3.5E-10 72.2 6.2 66 251-316 267-333 (520)
328 PRK14727 putative mercuric red 98.0 9.7E-06 2.1E-10 81.8 5.5 44 55-98 14-57 (479)
329 KOG2960 Protein involved in th 97.9 1.7E-05 3.8E-10 66.8 5.7 41 57-97 76-118 (328)
330 PTZ00188 adrenodoxin reductase 97.9 1.5E-05 3.2E-10 78.1 5.8 40 56-95 38-78 (506)
331 COG5044 MRS6 RAB proteins gera 97.9 0.00072 1.6E-08 62.4 16.1 40 56-95 5-44 (434)
332 PRK06292 dihydrolipoamide dehy 97.9 9E-05 2E-09 74.7 11.7 36 57-92 169-204 (460)
333 PRK05675 sdhA succinate dehydr 97.9 0.00016 3.4E-09 74.5 13.2 59 250-308 126-189 (570)
334 KOG2311 NAD/FAD-utilizing prot 97.9 4E-05 8.7E-10 72.7 7.8 36 55-90 26-61 (679)
335 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.4E-05 3E-10 77.6 4.8 35 58-92 1-35 (433)
336 PRK12814 putative NADPH-depend 97.9 2E-05 4.3E-10 82.4 6.2 41 55-95 191-231 (652)
337 KOG0404 Thioredoxin reductase 97.9 0.00012 2.6E-09 62.5 9.3 62 251-316 71-132 (322)
338 PRK12770 putative glutamate sy 97.8 0.00018 3.9E-09 69.6 11.7 34 57-90 172-206 (352)
339 TIGR01292 TRX_reduct thioredox 97.8 0.00024 5.1E-09 67.2 12.3 35 56-90 140-174 (300)
340 COG1251 NirB NAD(P)H-nitrite r 97.8 7.3E-05 1.6E-09 75.2 7.8 51 256-308 193-243 (793)
341 PRK15317 alkyl hydroperoxide r 97.7 0.00023 4.9E-09 72.7 11.3 35 56-90 350-384 (517)
342 TIGR01317 GOGAT_sm_gam glutama 97.7 5.1E-05 1.1E-09 76.5 5.8 39 56-94 142-180 (485)
343 PF13434 K_oxygenase: L-lysine 97.7 0.00026 5.7E-09 67.6 10.3 37 55-91 188-226 (341)
344 COG0493 GltD NADPH-dependent g 97.7 5.7E-05 1.2E-09 74.4 5.1 40 56-95 122-161 (457)
345 PF07156 Prenylcys_lyase: Pren 97.6 0.0012 2.5E-08 63.4 13.5 114 184-308 69-187 (368)
346 TIGR03862 flavo_PP4765 unchara 97.6 0.00045 9.6E-09 66.3 10.5 57 248-308 84-141 (376)
347 TIGR03169 Nterm_to_SelD pyridi 97.6 0.00071 1.5E-08 66.0 11.5 47 256-308 197-243 (364)
348 KOG3851 Sulfide:quinone oxidor 97.5 8.4E-05 1.8E-09 66.9 3.7 37 54-90 36-74 (446)
349 KOG0399 Glutamate synthase [Am 97.5 0.00011 2.3E-09 76.6 4.9 40 56-95 1784-1823(2142)
350 KOG1238 Glucose dehydrogenase/ 97.5 0.0024 5.2E-08 64.0 13.6 39 54-92 54-93 (623)
351 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00021 4.6E-09 66.1 4.9 41 56-96 19-61 (468)
352 KOG1336 Monodehydroascorbate/f 97.4 0.00098 2.1E-08 64.0 9.4 44 259-306 136-179 (478)
353 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00028 6.2E-09 64.0 3.9 36 57-92 3-38 (439)
354 TIGR03143 AhpF_homolog putativ 97.2 0.0041 8.8E-08 64.1 12.1 35 56-90 142-176 (555)
355 TIGR01816 sdhA_forward succina 97.1 0.0091 2E-07 61.6 13.6 58 250-308 119-181 (565)
356 KOG1346 Programmed cell death 97.1 0.0017 3.7E-08 60.9 7.3 63 250-314 393-455 (659)
357 KOG4405 GDP dissociation inhib 97.1 0.041 8.9E-07 51.9 16.0 122 179-305 217-342 (547)
358 KOG3855 Monooxygenase involved 97.0 0.0064 1.4E-07 57.3 10.6 49 263-311 166-220 (481)
359 KOG4716 Thioredoxin reductase 97.0 0.00071 1.5E-08 61.7 3.8 62 249-311 237-303 (503)
360 KOG2495 NADH-dehydrogenase (ub 96.9 0.0028 6E-08 60.0 7.2 48 256-307 279-328 (491)
361 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0032 6.9E-08 63.8 7.7 53 259-315 68-120 (793)
362 PRK09853 putative selenate red 96.9 0.01 2.3E-07 63.9 12.0 35 56-90 667-703 (1019)
363 COG3486 IucD Lysine/ornithine 96.8 0.017 3.7E-07 54.6 11.2 38 55-92 3-41 (436)
364 PRK12814 putative NADPH-depend 96.7 0.018 3.8E-07 60.6 12.1 35 56-90 322-357 (652)
365 KOG2755 Oxidoreductase [Genera 96.7 0.0016 3.5E-08 57.2 3.4 52 59-110 1-56 (334)
366 TIGR03315 Se_ygfK putative sel 96.5 0.024 5.1E-07 61.5 11.5 35 56-90 665-701 (1012)
367 COG3486 IucD Lysine/ornithine 96.5 0.039 8.5E-07 52.3 11.4 44 263-307 291-339 (436)
368 TIGR01317 GOGAT_sm_gam glutama 96.5 0.03 6.4E-07 56.7 11.5 37 56-92 282-319 (485)
369 PF01210 NAD_Gly3P_dh_N: NAD-d 96.4 0.0034 7.3E-08 52.8 3.8 32 59-90 1-32 (157)
370 PRK05249 soluble pyridine nucl 96.4 0.0064 1.4E-07 61.4 6.1 38 57-94 175-212 (461)
371 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0045 9.7E-08 53.3 4.2 33 59-91 1-33 (180)
372 PRK01438 murD UDP-N-acetylmura 96.3 0.0058 1.3E-07 62.0 5.7 52 56-109 15-66 (480)
373 PLN02172 flavin-containing mon 96.3 0.013 2.8E-07 58.6 7.8 35 56-90 203-237 (461)
374 COG0492 TrxB Thioredoxin reduc 96.1 0.058 1.3E-06 50.6 10.6 35 56-90 142-176 (305)
375 PF03721 UDPG_MGDP_dh_N: UDP-g 96.0 0.0069 1.5E-07 52.3 3.6 34 58-91 1-34 (185)
376 PRK02705 murD UDP-N-acetylmura 96.0 0.0081 1.7E-07 60.6 4.6 34 59-92 2-35 (459)
377 PF00743 FMO-like: Flavin-bind 95.9 0.025 5.4E-07 57.6 7.7 35 56-90 182-216 (531)
378 PF02558 ApbA: Ketopantoate re 95.9 0.01 2.2E-07 49.6 4.2 31 60-90 1-31 (151)
379 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.012 2.6E-07 55.7 4.7 34 58-91 3-36 (308)
380 COG0569 TrkA K+ transport syst 95.8 0.013 2.8E-07 52.4 4.6 35 58-92 1-35 (225)
381 PRK07066 3-hydroxybutyryl-CoA 95.7 0.016 3.5E-07 54.6 5.2 36 56-91 6-41 (321)
382 TIGR01316 gltA glutamate synth 95.7 0.025 5.4E-07 56.7 6.5 35 56-90 271-305 (449)
383 PRK12831 putative oxidoreducta 95.6 0.026 5.6E-07 56.8 6.4 35 56-90 280-314 (464)
384 TIGR01421 gluta_reduc_1 glutat 95.6 0.018 3.9E-07 57.8 5.3 37 58-94 167-203 (450)
385 KOG2495 NADH-dehydrogenase (ub 95.5 0.039 8.5E-07 52.5 6.7 38 54-91 52-89 (491)
386 PRK07819 3-hydroxybutyryl-CoA 95.5 0.021 4.5E-07 53.3 4.9 35 58-92 6-40 (286)
387 PF01262 AlaDh_PNT_C: Alanine 95.5 0.023 4.9E-07 48.4 4.8 35 56-90 19-53 (168)
388 PRK06249 2-dehydropantoate 2-r 95.4 0.027 5.9E-07 53.5 5.4 35 56-90 4-38 (313)
389 COG0446 HcaD Uncharacterized N 95.3 0.094 2E-06 52.0 9.3 45 261-310 64-108 (415)
390 PRK08010 pyridine nucleotide-d 95.3 0.04 8.7E-07 55.3 6.5 37 58-94 159-195 (441)
391 PRK08293 3-hydroxybutyryl-CoA 95.2 0.025 5.5E-07 52.9 4.6 33 58-90 4-36 (287)
392 PRK09260 3-hydroxybutyryl-CoA 95.2 0.026 5.6E-07 52.9 4.6 34 58-91 2-35 (288)
393 PF13738 Pyr_redox_3: Pyridine 95.2 0.023 5.1E-07 50.1 4.0 35 56-90 166-200 (203)
394 PRK14106 murD UDP-N-acetylmura 95.1 0.028 6E-07 56.6 5.0 35 56-90 4-38 (450)
395 PRK07530 3-hydroxybutyryl-CoA 95.0 0.034 7.4E-07 52.3 4.9 35 57-91 4-38 (292)
396 PLN02852 ferredoxin-NADP+ redu 95.0 0.22 4.8E-06 50.0 10.6 28 56-83 165-192 (491)
397 PF01488 Shikimate_DH: Shikima 94.9 0.056 1.2E-06 44.0 5.3 45 56-106 11-56 (135)
398 COG1252 Ndh NADH dehydrogenase 94.9 0.02 4.4E-07 55.3 3.1 56 56-111 154-227 (405)
399 cd01080 NAD_bind_m-THF_DH_Cycl 94.8 0.051 1.1E-06 45.9 4.9 35 55-89 42-77 (168)
400 PRK05708 2-dehydropantoate 2-r 94.8 0.044 9.6E-07 51.7 5.0 34 57-90 2-35 (305)
401 TIGR01470 cysG_Nterm siroheme 94.7 0.052 1.1E-06 47.7 4.9 34 56-89 8-41 (205)
402 PRK05808 3-hydroxybutyryl-CoA 94.7 0.048 1E-06 51.0 4.9 34 58-91 4-37 (282)
403 PRK06567 putative bifunctional 94.6 0.28 6.1E-06 52.8 10.7 50 259-308 649-728 (1028)
404 PRK06035 3-hydroxyacyl-CoA deh 94.6 0.044 9.6E-07 51.4 4.5 34 58-91 4-37 (291)
405 PRK06718 precorrin-2 dehydroge 94.5 0.066 1.4E-06 47.0 5.0 33 56-88 9-41 (202)
406 COG1004 Ugd Predicted UDP-gluc 94.5 0.048 1E-06 51.6 4.3 34 58-91 1-34 (414)
407 PRK12778 putative bifunctional 94.5 0.079 1.7E-06 57.0 6.5 35 56-90 569-604 (752)
408 COG0686 Ald Alanine dehydrogen 94.4 0.037 8E-07 50.3 3.3 35 56-90 167-201 (371)
409 PRK11064 wecC UDP-N-acetyl-D-m 94.4 0.053 1.1E-06 53.6 4.6 35 57-91 3-37 (415)
410 PRK06522 2-dehydropantoate 2-r 94.4 0.055 1.2E-06 51.2 4.7 32 59-90 2-33 (304)
411 PF13241 NAD_binding_7: Putati 94.3 0.038 8.2E-07 42.6 2.8 35 56-90 6-40 (103)
412 PRK04148 hypothetical protein; 94.3 0.048 1E-06 43.7 3.4 34 57-91 17-50 (134)
413 TIGR01763 MalateDH_bact malate 94.3 0.068 1.5E-06 50.3 5.1 34 58-91 2-36 (305)
414 PRK06719 precorrin-2 dehydroge 94.3 0.078 1.7E-06 44.4 4.9 32 56-87 12-43 (157)
415 PRK08229 2-dehydropantoate 2-r 94.3 0.061 1.3E-06 51.9 4.8 32 58-89 3-34 (341)
416 PRK12921 2-dehydropantoate 2-r 94.2 0.065 1.4E-06 50.8 4.7 30 59-88 2-31 (305)
417 PLN02545 3-hydroxybutyryl-CoA 94.2 0.069 1.5E-06 50.2 4.8 33 58-90 5-37 (295)
418 cd05292 LDH_2 A subgroup of L- 94.2 0.069 1.5E-06 50.4 4.8 32 59-90 2-35 (308)
419 TIGR02354 thiF_fam2 thiamine b 94.1 0.076 1.6E-06 46.5 4.6 35 56-90 20-55 (200)
420 KOG2304 3-hydroxyacyl-CoA dehy 94.1 0.06 1.3E-06 46.5 3.8 39 54-92 8-46 (298)
421 PRK11749 dihydropyrimidine deh 94.1 0.12 2.5E-06 52.2 6.5 53 56-108 272-326 (457)
422 TIGR00518 alaDH alanine dehydr 94.0 0.08 1.7E-06 51.3 4.9 35 56-90 166-200 (370)
423 COG1748 LYS9 Saccharopine dehy 93.9 0.077 1.7E-06 51.0 4.6 34 57-90 1-35 (389)
424 PRK06130 3-hydroxybutyryl-CoA 93.9 0.084 1.8E-06 50.1 4.9 34 57-90 4-37 (311)
425 KOG4716 Thioredoxin reductase 93.8 0.16 3.5E-06 46.9 6.1 37 58-94 199-235 (503)
426 PF03446 NAD_binding_2: NAD bi 93.8 0.085 1.8E-06 44.6 4.2 34 57-90 1-34 (163)
427 COG0771 MurD UDP-N-acetylmuram 93.7 0.075 1.6E-06 52.1 4.1 36 57-92 7-42 (448)
428 PRK14619 NAD(P)H-dependent gly 93.6 0.11 2.4E-06 49.2 5.1 35 56-90 3-37 (308)
429 PRK08268 3-hydroxy-acyl-CoA de 93.6 0.11 2.4E-06 52.7 5.2 37 56-92 6-42 (507)
430 PRK14618 NAD(P)H-dependent gly 93.5 0.1 2.2E-06 50.0 4.7 33 58-90 5-37 (328)
431 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.5 0.098 2.1E-06 52.9 4.7 36 57-92 5-40 (503)
432 TIGR03026 NDP-sugDHase nucleot 93.4 0.089 1.9E-06 52.1 4.3 33 59-91 2-34 (411)
433 PRK00094 gpsA NAD(P)H-dependen 93.4 0.1 2.3E-06 49.8 4.6 33 58-90 2-34 (325)
434 PF00056 Ldh_1_N: lactate/mala 93.4 0.15 3.4E-06 41.8 4.9 33 58-90 1-36 (141)
435 PRK04690 murD UDP-N-acetylmura 93.3 0.11 2.3E-06 52.5 4.6 35 57-91 8-42 (468)
436 PTZ00082 L-lactate dehydrogena 93.3 0.14 3E-06 48.6 5.1 37 56-92 5-42 (321)
437 PF02254 TrkA_N: TrkA-N domain 93.3 0.13 2.8E-06 40.6 4.2 33 60-92 1-33 (116)
438 PF00899 ThiF: ThiF family; I 93.2 0.14 3.1E-06 41.6 4.6 34 57-90 2-36 (135)
439 cd05311 NAD_bind_2_malic_enz N 93.2 0.14 3.1E-06 45.8 4.8 36 56-91 24-62 (226)
440 PRK09424 pntA NAD(P) transhydr 93.1 0.13 2.7E-06 51.8 4.7 47 56-109 164-210 (509)
441 COG1250 FadB 3-hydroxyacyl-CoA 93.1 0.13 2.8E-06 47.9 4.4 36 57-92 3-38 (307)
442 PRK14620 NAD(P)H-dependent gly 93.1 0.12 2.6E-06 49.4 4.5 32 59-90 2-33 (326)
443 cd05293 LDH_1 A subgroup of L- 93.0 0.16 3.5E-06 47.9 5.1 35 56-90 2-38 (312)
444 PRK02472 murD UDP-N-acetylmura 93.0 0.13 2.7E-06 51.8 4.8 34 57-90 5-38 (447)
445 COG3634 AhpF Alkyl hydroperoxi 93.0 0.087 1.9E-06 48.7 3.2 37 54-90 351-387 (520)
446 PRK06223 malate dehydrogenase; 93.0 0.15 3.3E-06 48.3 4.9 34 58-91 3-37 (307)
447 PRK04308 murD UDP-N-acetylmura 93.0 0.15 3.2E-06 51.3 5.1 35 57-91 5-39 (445)
448 PRK01710 murD UDP-N-acetylmura 92.9 0.14 2.9E-06 51.7 4.8 34 57-90 14-47 (458)
449 cd01075 NAD_bind_Leu_Phe_Val_D 92.8 0.18 4E-06 44.2 4.9 35 56-90 27-61 (200)
450 PRK07531 bifunctional 3-hydrox 92.8 0.13 2.9E-06 52.1 4.5 34 58-91 5-38 (495)
451 PRK03369 murD UDP-N-acetylmura 92.8 0.15 3.2E-06 51.8 4.7 33 57-89 12-44 (488)
452 PRK11730 fadB multifunctional 92.7 0.14 3.1E-06 54.3 4.8 37 56-92 312-348 (715)
453 PRK12549 shikimate 5-dehydroge 92.7 0.17 3.8E-06 47.1 4.8 35 56-90 126-161 (284)
454 TIGR02437 FadB fatty oxidation 92.7 0.16 3.4E-06 53.9 5.0 37 56-92 312-348 (714)
455 cd05191 NAD_bind_amino_acid_DH 92.6 0.27 5.8E-06 36.3 4.8 33 56-88 22-55 (86)
456 PRK07417 arogenate dehydrogena 92.5 0.15 3.2E-06 47.6 4.1 32 59-90 2-33 (279)
457 PRK00421 murC UDP-N-acetylmura 92.5 0.16 3.5E-06 51.2 4.6 36 56-91 6-42 (461)
458 PRK12779 putative bifunctional 92.4 0.25 5.4E-06 54.1 6.3 36 56-91 446-481 (944)
459 cd00401 AdoHcyase S-adenosyl-L 92.4 0.19 4.1E-06 49.1 4.7 35 56-90 201-235 (413)
460 PLN02353 probable UDP-glucose 92.3 0.18 3.9E-06 50.4 4.6 35 58-92 2-38 (473)
461 PRK15057 UDP-glucose 6-dehydro 92.2 0.18 3.9E-06 49.2 4.4 33 59-92 2-34 (388)
462 PTZ00117 malate dehydrogenase; 92.2 0.23 5.1E-06 47.1 5.1 36 56-91 4-40 (319)
463 PRK08306 dipicolinate synthase 92.1 0.24 5.1E-06 46.5 5.0 35 56-90 151-185 (296)
464 cd05291 HicDH_like L-2-hydroxy 92.1 0.22 4.7E-06 47.1 4.8 33 59-91 2-36 (306)
465 TIGR02441 fa_ox_alpha_mit fatt 92.1 0.2 4.3E-06 53.3 4.8 37 56-92 334-370 (737)
466 TIGR01915 npdG NADPH-dependent 92.0 0.23 5.1E-06 44.3 4.6 32 59-90 2-34 (219)
467 COG1893 ApbA Ketopantoate redu 91.9 0.2 4.3E-06 47.2 4.2 34 58-91 1-34 (307)
468 PRK12475 thiamine/molybdopteri 91.9 0.23 5.1E-06 47.4 4.7 35 56-90 23-58 (338)
469 PRK07688 thiamine/molybdopteri 91.9 0.24 5.2E-06 47.3 4.8 35 56-90 23-58 (339)
470 TIGR02853 spore_dpaA dipicolin 91.8 0.25 5.4E-06 46.0 4.7 35 56-90 150-184 (287)
471 TIGR00561 pntA NAD(P) transhyd 91.8 0.24 5.2E-06 49.7 4.8 45 57-108 164-208 (511)
472 PRK15116 sulfur acceptor prote 91.7 0.28 6E-06 44.9 4.8 35 56-90 29-64 (268)
473 cd01078 NAD_bind_H4MPT_DH NADP 91.7 0.3 6.6E-06 42.6 4.9 34 56-89 27-61 (194)
474 TIGR02356 adenyl_thiF thiazole 91.5 0.31 6.7E-06 42.8 4.8 35 56-90 20-55 (202)
475 PRK01368 murD UDP-N-acetylmura 91.5 0.22 4.7E-06 50.0 4.2 32 57-89 6-37 (454)
476 PRK00683 murD UDP-N-acetylmura 91.5 0.25 5.4E-06 49.1 4.6 34 57-90 3-36 (418)
477 PRK12548 shikimate 5-dehydroge 91.5 0.34 7.3E-06 45.3 5.2 35 56-90 125-160 (289)
478 PRK00066 ldh L-lactate dehydro 91.5 0.32 7E-06 46.0 5.1 36 56-91 5-42 (315)
479 cd01339 LDH-like_MDH L-lactate 91.5 0.22 4.8E-06 46.9 4.0 32 60-91 1-33 (300)
480 cd01487 E1_ThiF_like E1_ThiF_l 91.4 0.32 6.9E-06 41.6 4.6 32 59-90 1-33 (174)
481 PRK00141 murD UDP-N-acetylmura 91.4 0.26 5.7E-06 49.7 4.8 33 57-89 15-47 (473)
482 TIGR02440 FadJ fatty oxidation 91.3 0.35 7.7E-06 51.2 5.8 37 56-92 303-340 (699)
483 PRK02006 murD UDP-N-acetylmura 91.2 0.26 5.7E-06 50.2 4.6 34 57-90 7-40 (498)
484 PF13478 XdhC_C: XdhC Rossmann 91.2 0.24 5.2E-06 40.2 3.4 33 60-92 1-33 (136)
485 cd05290 LDH_3 A subgroup of L- 91.1 0.3 6.5E-06 45.9 4.5 32 59-90 1-34 (307)
486 TIGR00507 aroE shikimate 5-deh 91.1 0.34 7.4E-06 44.9 4.9 35 56-90 116-150 (270)
487 PRK08644 thiamine biosynthesis 91.1 0.38 8.1E-06 42.6 4.9 35 56-90 27-62 (212)
488 PRK11199 tyrA bifunctional cho 91.1 0.33 7.1E-06 47.3 4.9 36 55-90 96-132 (374)
489 TIGR01505 tartro_sem_red 2-hyd 91.1 0.24 5.2E-06 46.5 3.8 32 59-90 1-32 (291)
490 TIGR02355 moeB molybdopterin s 91.0 0.35 7.5E-06 43.8 4.7 35 56-90 23-58 (240)
491 cd01065 NAD_bind_Shikimate_DH 90.9 0.42 9.2E-06 39.9 4.9 35 56-90 18-53 (155)
492 KOG1335 Dihydrolipoamide dehyd 90.9 0.2 4.4E-06 47.1 3.0 40 57-96 211-250 (506)
493 PRK11154 fadJ multifunctional 90.8 0.31 6.6E-06 51.8 4.7 36 56-91 308-344 (708)
494 KOG1346 Programmed cell death 90.8 0.81 1.8E-05 43.7 6.8 43 262-308 269-311 (659)
495 PRK03803 murD UDP-N-acetylmura 90.6 0.29 6.4E-06 49.1 4.3 34 57-90 6-39 (448)
496 PRK12810 gltD glutamate syntha 90.6 0.54 1.2E-05 47.6 6.1 39 451-491 427-465 (471)
497 PRK05690 molybdopterin biosynt 90.6 0.41 8.9E-06 43.5 4.8 35 56-90 31-66 (245)
498 PLN02695 GDP-D-mannose-3',5'-e 90.6 0.5 1.1E-05 46.1 5.7 37 54-90 18-55 (370)
499 PRK15461 NADH-dependent gamma- 90.5 0.35 7.6E-06 45.4 4.4 33 58-90 2-34 (296)
500 cd01483 E1_enzyme_family Super 90.5 0.42 9.2E-06 39.3 4.4 32 59-90 1-33 (143)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.8e-53 Score=430.41 Aligned_cols=491 Identities=88% Similarity=1.394 Sum_probs=403.8
Q ss_pred CCCCcccccccCCCCCCCCCcchhhhccccCCCCCCCCCCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC-
Q 010539 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG- 94 (508)
Q Consensus 16 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g- 94 (508)
+..|+..-|+++|.|....+.+|-........+...|.+....+|+|||||++||+||++|+++|++|+|+|++++++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 3458899999999999888888887666556666666666778999999999999999999999999999999887644
Q ss_pred ---------------------CChhHHHHHHHcCCCCccccccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcC
Q 010539 95 ---------------------AYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 153 (508)
Q Consensus 95 ---------------------~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (508)
.++++.++++++|++..+.+......+.++...+.+..+.++...|.++..+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 35678899999999887777766666666655555555566555677777777877776
Q ss_pred CCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHh
Q 010539 154 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 233 (508)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (508)
..+++.++++......+............+..++.+|+++.+.+..+.+.++.++....++.+++++++...+..+..++
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l 291 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL 291 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH
Confidence 77788888877655443333333344456789999999999999999999999999899999999999999888777777
Q ss_pred hhccCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhc
Q 010539 234 QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 313 (508)
Q Consensus 234 ~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll 313 (508)
....++.+.+..|+.+..+++.|.+.+++.|++|++|++|++|+.++++.+++|.+.+|+++.||+||+|+|+..+..|+
T Consensus 292 ~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll 371 (567)
T PLN02612 292 QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLL 371 (567)
T ss_pred hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhC
Confidence 77778888888887668899999999999999999999999999866776767888888889999999999999999998
Q ss_pred CcchhccHHHHHHhhcCCcCEEEEEEEecccccccccccccccCccceeecccccccccccCCCccEEEEEecCchhhcC
Q 010539 314 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWIS 393 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (508)
+....+.++.+.+.++.+.++.+++++|++++|...+.+++...+..+.+.+++...+.+.+++..++.+++.++.+|..
T Consensus 372 ~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~ 451 (567)
T PLN02612 372 PDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWIS 451 (567)
T ss_pred cchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhc
Confidence 87555556777888888889999999999998776666677666666667777666666777777777777777889999
Q ss_pred CChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHH
Q 010539 394 CSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASME 473 (508)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~ 473 (508)
.+++++++.++++|.++||....+......+..+.+...|.+.|.+.++...+++.+++|++|||||||++...|.++|+
T Consensus 452 ~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~sme 531 (567)
T PLN02612 452 RSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASME 531 (567)
T ss_pred CCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHH
Confidence 99999999999999999997644433456678888999999999888887777888999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCC
Q 010539 474 GAVLSGKLCAQAIVQDYVLLAARGKGRLAEASM 506 (508)
Q Consensus 474 gA~~sg~~aA~~il~~l~~~~~~~~~~~~~~~~ 506 (508)
||+.||++||++|+++++....+...+.++++-
T Consensus 532 GAv~SG~~AA~~I~~~~~~~~~~~~~~~~~~~~ 564 (567)
T PLN02612 532 GAVLSGKLCAQSIVQDYELLAARGPRKLSEATV 564 (567)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 999999999999999998777777777766653
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=4.1e-43 Score=350.90 Aligned_cols=425 Identities=73% Similarity=1.190 Sum_probs=319.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC----------------------ChhHHHHHHHcCCCCcccccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA----------------------YPNIQNLFGELGINDRLQWKE 116 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~----------------------~~~~~~l~~~lg~~~~~~~~~ 116 (508)
+|+|||||++||+||+.|+++|++|+|+|++++++|. ++++.++++++|+...+.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 5899999999999999999999999999999877552 467789999999877665555
Q ss_pred ccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHcCC
Q 010539 117 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 196 (508)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 196 (508)
....+......+....+.++. .+.++..+..++.....+++.+++++............+.....+++++.+|+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 159 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCC
Confidence 444444433333333333332 4455555555554444567777777665443322222233344578899999999999
Q ss_pred ChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEE
Q 010539 197 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 276 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I 276 (508)
+..+.+.++.++...++..+++++|..+.+..+..++....|....+..|+.+..+++.|.+.+++.|++|++|++|++|
T Consensus 160 ~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I 239 (453)
T TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEE
Confidence 99999999999999999999999999998887777666566666666666556789999999999999999999999999
Q ss_pred EEcCCCcEEEEEEcCCc-----EEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEEecccccccccc
Q 010539 277 ELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 351 (508)
Q Consensus 277 ~~~~~g~~~~V~~~~g~-----~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 351 (508)
..++++.+++|++.+|+ ++.||.||+|+++..+.+|++.......+.+.+.++.+.++.+++++++++++... +
T Consensus 240 ~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-~ 318 (453)
T TIGR02731 240 VLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVD-H 318 (453)
T ss_pred EECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCC-c
Confidence 87566767778886664 79999999999999999999765333456677778888899999999999876432 3
Q ss_pred cccccCccceeecccccccccccCCCccEEEEEecCchhhcCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEee
Q 010539 352 LLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVK 431 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 431 (508)
+++...+......+.+.......+++..++.+++.....+...+++++++.++++|.++||...... ....+..+.|.+
T Consensus 319 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~-~~~~~~~~~~~~ 397 (453)
T TIGR02731 319 LLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD-SPAKILKYKVVK 397 (453)
T ss_pred eeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCC-CCceEEEEEEEE
Confidence 3444444333333333333344455667777766666778889999999999999999998631100 123466778889
Q ss_pred cCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHH
Q 010539 432 TPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAI 486 (508)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~i 486 (508)
.|.+.|...|+.....+.+++|++||||||++++..|+++||||+.||++||++|
T Consensus 398 ~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 398 TPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 9998876677766677788999999999999999999899999999999999987
No 3
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=3.8e-39 Score=321.43 Aligned_cols=432 Identities=34% Similarity=0.578 Sum_probs=313.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC----------------------CChhHHHHHHHcCCCCccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG----------------------AYPNIQNLFGELGINDRLQ 113 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g----------------------~~~~~~~l~~~lg~~~~~~ 113 (508)
+.++|+|||||++||++|+.|+++|++|+|+|+++..+| .++++.++++++|+...+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 446999999999999999999999999999999987754 2466889999999987655
Q ss_pred cccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcch--hhHhc------CcchhhcccCc
Q 010539 114 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAIIG------GQAYVEAQDGL 185 (508)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~ 185 (508)
+......+. ...+....+.+....+.++..+..++. ...+.+.++++...... +.... ........++.
T Consensus 154 ~~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~-~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~ 230 (569)
T PLN02487 154 VKDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLT-TNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDI 230 (569)
T ss_pred ccccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHc-CCCCCHHHHHhhcccccccchhhhccCccccccccccccCC
Confidence 433222121 111111112211123344433333333 35566777776643331 11010 11223345678
Q ss_pred cHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcCC
Q 010539 186 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGG 265 (508)
Q Consensus 186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~ 265 (508)
++.+|+++++.+....+.+++++....++.+++++|+......+..+.....++...++.|+....|.+.+.+.++++|+
T Consensus 231 sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 231 SFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999999988777999999999999999999999999887776433324445567788877334699999999999999
Q ss_pred EEEeCceeeEEEEcC--CC--cEEEEEE---cCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEE
Q 010539 266 EVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIH 338 (508)
Q Consensus 266 ~i~~~~~V~~I~~~~--~g--~~~~V~~---~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~ 338 (508)
+|+++++|.+|..+. ++ .+++|++ .+++++.+|.||+|++++.+.+|+|+.....+.+..+..+.+.+++.++
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~ 390 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQ 390 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEE
Confidence 999999999999853 33 3678888 3445689999999999999999999875555668888999899999999
Q ss_pred EEecccccccc--------------cccccccCccceeecccccccc--cccCCCccEEEEEecCchhhcCCChHHHHHH
Q 010539 339 IWFDRKLKNTY--------------DHLLFSRSSLLSVYADMSLTCK--EYYNPNQSMLELVFAPAEEWISCSDSEIIDA 402 (508)
Q Consensus 339 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (508)
++||+++.... +.+.+.......++.+.....+ .+.+....++.+++.+.+.+..++++++++.
T Consensus 391 L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~ 470 (569)
T PLN02487 391 LRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEK 470 (569)
T ss_pred EEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHH
Confidence 99998663211 1111111111111222111111 1122334667788888888999999999999
Q ss_pred HHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHH
Q 010539 403 TMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 482 (508)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~a 482 (508)
++++|.+++|..... .+....+.+.+++.|...||....+|.++++++|||+||||+..+|+.+||||+.||.+|
T Consensus 471 ~~~~L~~~~p~~~~~-----~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~A 545 (569)
T PLN02487 471 VHKQVLELFPSSRGL-----EVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQA 545 (569)
T ss_pred HHHHHHHhCcccccC-----ceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHHHHHHHH
Confidence 999999999884321 255668899999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 010539 483 AQAIVQDYVLLAA 495 (508)
Q Consensus 483 A~~il~~l~~~~~ 495 (508)
|+.|+++......
T Consensus 546 A~~i~~~~~~~~~ 558 (569)
T PLN02487 546 AAYICEAGEELAG 558 (569)
T ss_pred HHHHHHHhhhhhh
Confidence 9999998866443
No 4
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2.7e-39 Score=321.42 Aligned_cols=421 Identities=36% Similarity=0.639 Sum_probs=303.8
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC----------------------ChhHHHHHHHcCCCCcccccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA----------------------YPNIQNLFGELGINDRLQWKE 116 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~----------------------~~~~~~l~~~lg~~~~~~~~~ 116 (508)
+|+|||||++||+||+.|+++|++|+|+|+++.++|. ++++.++++++|+...+.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 5899999999999999999999999999999887552 355778899999887655443
Q ss_pred ccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcch--hhHhc------CcchhhcccCccHH
Q 010539 117 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAIIG------GQAYVEAQDGLTVQ 188 (508)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~ 188 (508)
....+. ...+....+.+....+.++.....+++ ...+++.++++...... +.... ........+++++.
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFV--NKGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEE--cCCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 322222 111222222222224445444555553 46677888777655432 11110 01122234678999
Q ss_pred HHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcCCEEE
Q 010539 189 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 268 (508)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~ 268 (508)
+|+++++.+..+.+.+++++....++.+++++|+.+.+..+..+.....++.+.++.|+....+.+.+.+.+++.|++|+
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~ 237 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFH 237 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEE
Confidence 99999988888899999999999999999999998887655544445667778888776444577889999999999999
Q ss_pred eCceeeEEEEcC--CC--cEEEEEEcCC---cEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEEe
Q 010539 269 LNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWF 341 (508)
Q Consensus 269 ~~~~V~~I~~~~--~g--~~~~V~~~~g---~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 341 (508)
++++|++|..++ ++ .+++|.+.+| +++.||+||+|++++.+..|+++.....+....+.++.+.++.+|+++|
T Consensus 238 ~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~ 317 (474)
T TIGR02732 238 LRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRY 317 (474)
T ss_pred CCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEe
Confidence 999999998743 23 2667777544 5689999999999999999998754444567788889999999999999
Q ss_pred ccccccc--------------ccccccccCccceeecccccccc-cccCCCc-cEEEEEecCchhhcCCChHHHHHHHHH
Q 010539 342 DRKLKNT--------------YDHLLFSRSSLLSVYADMSLTCK-EYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMK 405 (508)
Q Consensus 342 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (508)
+++.... .+.+++........+.+.....+ .+.+++. .++..++.+..++..++++++++.+++
T Consensus 318 ~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 397 (474)
T TIGR02732 318 DGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDK 397 (474)
T ss_pred ccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHH
Confidence 9765321 11111111100111222221112 2333333 445566666677878999999999999
Q ss_pred HHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHH
Q 010539 406 ELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 485 (508)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~ 485 (508)
+|.++||.... .++....+.+.+++.|...||+.+.+|..+++++|||+||||+..+|+.+||||+.||++||+.
T Consensus 398 ~L~~~~p~~~~-----~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~ 472 (474)
T TIGR02732 398 QVRALFPSSKN-----LKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAA 472 (474)
T ss_pred HHHHhCccccC-----CceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHH
Confidence 99999996322 1355567889999999999998888899999999999999999999999999999999999998
Q ss_pred HH
Q 010539 486 IV 487 (508)
Q Consensus 486 il 487 (508)
|+
T Consensus 473 i~ 474 (474)
T TIGR02732 473 IL 474 (474)
T ss_pred hC
Confidence 74
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=7e-35 Score=291.51 Aligned_cols=404 Identities=25% Similarity=0.351 Sum_probs=272.7
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC---------------------ChhHHHHHHHcCCCCccccccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA---------------------YPNIQNLFGELGINDRLQWKEH 117 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~---------------------~~~~~~l~~~lg~~~~~~~~~~ 117 (508)
+|+|||||++||+||+.|+++|++|+|||+++++||. ++++.++++++|+.....+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~ 80 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRET 80 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccC
Confidence 6999999999999999999999999999999998664 3456788899998765444332
Q ss_pred cceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHcCCC
Q 010539 118 SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVP 197 (508)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (508)
...+.+.+ ... ++.....++.. ..+...+++........... .......+..++.+|+.+. ..
T Consensus 81 ~~~~~~~~---~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~l~~~-~~ 143 (434)
T PRK07233 81 KTGYYVDG---KLY----------PLGTPLELLRF-PHLSLIDKFRLGLLTLLARR--IKDWRALDKVPAEEWLRRW-SG 143 (434)
T ss_pred ceEEEECC---eEe----------cCCCHHHHHcC-CCCCHHHHHHhHHHHHhhhh--cccccccccccHHHHHHHh-cC
Confidence 22222211 000 01111111111 12233344333222111100 0112234568999999987 46
Q ss_pred hhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhc---cCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceee
Q 010539 198 DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQ 274 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~ 274 (508)
....+.++.++....++.++++++..+.+..+....... ....+.++.|| ...+++.|.+.+++.|++|+++++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V~ 222 (434)
T PRK07233 144 EGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPVT 222 (434)
T ss_pred HHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCee
Confidence 667788999999999999999999887665544321110 12346667776 78999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEEeccccccccccccc
Q 010539 275 KIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLF 354 (508)
Q Consensus 275 ~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 354 (508)
+|+.++ +.++.+. .+++++.||+||+|+|+..+..|+++.. ....+.+.++.+.+..++++.+++++.+.+ ...+
T Consensus 223 ~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 297 (434)
T PRK07233 223 SVVIDG-GGVTGVE-VDGEEEDFDAVISTAPPPILARLVPDLP--ADVLARLRRIDYQGVVCMVLKLRRPLTDYY-WLNI 297 (434)
T ss_pred EEEEcC-CceEEEE-eCCceEECCEEEECCCHHHHHhhcCCCc--HHHHhhhcccCccceEEEEEEecCCCCCCc-eeee
Confidence 999744 4443344 4566899999999999999999986532 244567788888899999999998764311 1111
Q ss_pred cc--CccceeecccccccccccCCCccEEE-EEe-cCchhhcCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEe
Q 010539 355 SR--SSLLSVYADMSLTCKEYYNPNQSMLE-LVF-APAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVV 430 (508)
Q Consensus 355 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (508)
.. .++...+ ..+..++...+++.+++. .++ .+...+...+++++++.++++|.+++|.... ..+....+.
T Consensus 298 ~~~~~~~~~~~-~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~-----~~~~~~~~~ 371 (434)
T PRK07233 298 NDPGAPFGGVI-EHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDR-----DDVRAVRIS 371 (434)
T ss_pred cCCCCCcceEE-EecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCCh-----hheeeEEEE
Confidence 12 2233332 223334444445555433 223 3333344678899999999999999985321 125667788
Q ss_pred ecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010539 431 KTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491 (508)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~ 491 (508)
+++.+.+.+.+++....+.++++++||||||+++...+.++|++|+.||++||++|+..++
T Consensus 372 r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 372 RAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred EeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 8888888777777667777788899999999954443345999999999999999998764
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=2e-33 Score=281.89 Aligned_cols=400 Identities=16% Similarity=0.197 Sum_probs=263.6
Q ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEeccccCCCC---------------------ChhHHHHHHHcCCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLVGA---------------------YPNIQNLFGELGIND 110 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~------g~~V~vlE~~~~~~g~---------------------~~~~~~l~~~lg~~~ 110 (508)
++|+|||||++||+||++|++. |++|+|||+++++||. ++++.++++++|++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE 81 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence 5799999999999999999986 3799999999999654 456779999999886
Q ss_pred ccccccccceeecCCCCCCcccccCCC--CCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHH
Q 010539 111 RLQWKEHSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 188 (508)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (508)
...+......+.+. .+....+.... .+|.. +..++ ....+++..+++.+....... ....+++++.
T Consensus 82 ~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~p~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~sv~ 149 (463)
T PRK12416 82 EMVYNETGISYIYS--DNTLHPIPSDTIFGIPMS---VESLF-SSTLVSTKGKIVALKDFITKN------KEFTKDTSLA 149 (463)
T ss_pred ceecCCCCceEEEE--CCeEEECCCCCeecCCCC---hHHhh-cCCcCCHHHHHHhhhhhccCC------CCCCCCCCHH
Confidence 65443322211111 11111111000 01111 11111 123334444444433322110 0113578999
Q ss_pred HHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhh-----------------hccCCeEEeecCCcccc
Q 010539 189 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----------------EKHGSKMAFLDGNPPER 251 (508)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~~~~~~g~~~~~ 251 (508)
+|+++. +...+.+.++.++...++..++++++....+..+..+.. ...+..+.++.|| +..
T Consensus 150 ~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~ 227 (463)
T PRK12416 150 LFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGG-LST 227 (463)
T ss_pred HHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCC-HHH
Confidence 999986 677888899999999999999999987654433221110 0112234456565 788
Q ss_pred chHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCC
Q 010539 252 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVG 331 (508)
Q Consensus 252 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 331 (508)
|++.|.+.+.+ ++|+++++|++|+.++++ +.|++.+|+++.||+||+|+|+..+..|++++. ....+.++.+
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~----l~~~~~~~~~ 299 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAPHDIAETLLQSNE----LNEQFHTFKN 299 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCCHHHHHhhcCCcc----hhHHHhcCCC
Confidence 88888888754 689999999999985544 357777887899999999999999999987542 2355677888
Q ss_pred cCEEEEEEEecccccc-ccc--ccccccCccc---eeecccccccccccCCCccEEEEEecC----chhhcCCChHHHHH
Q 010539 332 VPVINIHIWFDRKLKN-TYD--HLLFSRSSLL---SVYADMSLTCKEYYNPNQSMLELVFAP----AEEWISCSDSEIID 401 (508)
Q Consensus 332 ~~~~~v~~~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 401 (508)
.++.++++.|+++.+. ... +++..+.... ++. ..+..++...+++..++.+++.+ .+++.+++++++.+
T Consensus 300 ~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~-~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~ 378 (463)
T PRK12416 300 SSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACT-WTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVR 378 (463)
T ss_pred CceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEE-eecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHH
Confidence 8999999999976532 111 2222222211 112 12223334444455555545432 35567889999999
Q ss_pred HHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCC----CCCCCCCCCceEEecccccCCCCCcHHHHHH
Q 010539 402 ATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVL 477 (508)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~ 477 (508)
.++++|.+++|.... +..+.+.+|..+.+.|..++... .+.+..+.++|||||+++.+ .+|++|+.
T Consensus 379 ~~~~~L~~~lG~~~~-------p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g---~~i~~ai~ 448 (463)
T PRK12416 379 VALYDIEKSLGIKGE-------PEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG---VGIGACIG 448 (463)
T ss_pred HHHHHHHHHhCCCCC-------ceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc---ccHHHHHH
Confidence 999999999986432 35677888888888876664222 12234456899999999887 68999999
Q ss_pred HHHHHHHHHHHHH
Q 010539 478 SGKLCAQAIVQDY 490 (508)
Q Consensus 478 sg~~aA~~il~~l 490 (508)
||+++|++|++.+
T Consensus 449 sg~~aA~~i~~~~ 461 (463)
T PRK12416 449 NGKNTANEIIATL 461 (463)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999765
No 7
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=7.1e-33 Score=278.58 Aligned_cols=397 Identities=20% Similarity=0.284 Sum_probs=266.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCceEEEeccccCCCC---------------------ChhHHHHHHHcCCCCc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLVGA---------------------YPNIQNLFGELGINDR 111 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~----g~~V~vlE~~~~~~g~---------------------~~~~~~l~~~lg~~~~ 111 (508)
++||+|||||++||+||++|+++ |++|+|+|+++++||. ++++.++++++|++..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence 47999999999999999999999 9999999999998654 3557889999998765
Q ss_pred cccccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHH
Q 010539 112 LQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM 191 (508)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (508)
.........+.... .+.+.. .|. .+..++. .....+.+++........ .. ....++++.+|+
T Consensus 82 ~~~~~~~~~~~~~~-~g~~~~------~p~---~~~~~~~-~~~~~~~~~~~~~~~~~~---~~----~~~~d~s~~e~l 143 (462)
T TIGR00562 82 LVSDATGQRYVLVN-RGKLMP------VPT---KIAPFVK-TGLFSLGGKLRAGMDFIR---PA----SPGKDESVEEFV 143 (462)
T ss_pred cccCCCCceEEEEC-CCceec------CCC---ChHHHhc-CCCCCchhhHHhhhhhcc---CC----CCCCCcCHHHHH
Confidence 43311111111100 011110 111 1112221 123344444443321110 00 012358999999
Q ss_pred HHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHH-----------hhhc--------------cCCeEEeecC
Q 010539 192 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQEK--------------HGSKMAFLDG 246 (508)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~--------------~g~~~~~~~g 246 (508)
++. +...+.+.++.++..+++..+++++++.+.+..+... .... .|..+..+.+
T Consensus 144 ~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 222 (462)
T TIGR00562 144 RRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLAT 222 (462)
T ss_pred HHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecch
Confidence 987 6778888999999999999999999988665433211 0000 1111233333
Q ss_pred CccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHH
Q 010539 247 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRL 326 (508)
Q Consensus 247 ~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~ 326 (508)
| ...|.+.|.+.+. .++|+++++|++|+.++++ +.|++.+|+++.||+||+|+|+..+..|+++.. ....+++
T Consensus 223 G-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~--~~~~~~l 295 (462)
T TIGR00562 223 G-LETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPHKAAAGLLSELS--NSASSHL 295 (462)
T ss_pred h-HHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCHHHHHHHhcccC--HHHHHHH
Confidence 3 5566677766663 2789999999999975444 347777887899999999999999999987633 2567788
Q ss_pred hhcCCcCEEEEEEEeccccccc-cccc--ccccC---ccceeecccccccccccCCCccEEEEEecCc--hhhcCCChHH
Q 010539 327 EKLVGVPVINIHIWFDRKLKNT-YDHL--LFSRS---SLLSVYADMSLTCKEYYNPNQSMLELVFAPA--EEWISCSDSE 398 (508)
Q Consensus 327 ~~~~~~~~~~v~~~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 398 (508)
.++.+.++.++.+.|++++|.. ..++ +.... .+.++.++. ...+...+++..++.+++++. .++.+.++++
T Consensus 296 ~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s-~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee 374 (462)
T TIGR00562 296 DKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTS-KLFPNRAPPGKTLLTAYIGGATDESIVDLSENE 374 (462)
T ss_pred hcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEc-cccCCcCCCCcEEEEEEeCCCCCccccCCCHHH
Confidence 8999999999999998876532 2222 22221 234444433 334555666767666655543 4566789999
Q ss_pred HHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCC----CCCCCCceEEecccccCCCCCcHHH
Q 010539 399 IIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL----QRSPVEGFYLAGDYTKQKYLASMEG 474 (508)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~aG~~~~~~~~~~~~g 474 (508)
+.+.++++|.++++.... +....+.+|..+.+.|.+++....+. +..+.++||+||++..+ .+|++
T Consensus 375 ~~~~v~~~L~~~~gi~~~-------p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g---~~i~~ 444 (462)
T TIGR00562 375 IINIVLRDLKKVLNINNE-------PEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG---VGIPD 444 (462)
T ss_pred HHHHHHHHHHHHhCCCCC-------CcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC---CcHHH
Confidence 999999999999975322 34567888999888888875332222 23446799999999875 69999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010539 475 AVLSGKLCAQAIVQDY 490 (508)
Q Consensus 475 A~~sg~~aA~~il~~l 490 (508)
|+.||+.+|++|++.+
T Consensus 445 ~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 445 CIDQGKAAASDVLTFL 460 (462)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998876
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-33 Score=267.53 Aligned_cols=388 Identities=22% Similarity=0.315 Sum_probs=271.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CceEEEeccccCCCC---------------------ChhHHHHHHHcCCCCcccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLVGA---------------------YPNIQNLFGELGINDRLQW 114 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g--~~V~vlE~~~~~~g~---------------------~~~~~~l~~~lg~~~~~~~ 114 (508)
+.|+|||||++||+|||+|+|++ .+|+|||+.+++||. -..+.++++++|++..+.+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~ 80 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLW 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhcc
Confidence 46999999999999999999998 999999999998653 2567789999999988876
Q ss_pred ccccce-eecCCCCCCcccccCCCC--CCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHH
Q 010539 115 KEHSMI-FAMPNKPGEFSRFDFPEV--LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM 191 (508)
Q Consensus 115 ~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (508)
.....- +... +++..+..... +|..... +.......+..... .......++.++.+|+
T Consensus 81 ~~~~~~~i~~~---gkl~p~P~~~i~~ip~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~~~d~sv~~f~ 141 (444)
T COG1232 81 NSTARKYIYYD---GKLHPIPTPTILGIPLLLLS-----------SEAGLARALQEFIR-----PKSWEPKQDISVGEFI 141 (444)
T ss_pred CCcccceEeeC---CcEEECCccceeecCCcccc-----------chhHHHHHHHhhhc-----ccCCCCCCCcCHHHHH
Confidence 543322 1111 11111111100 0000000 00111111111111 0111223578999999
Q ss_pred HHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCe------------------EEeecCCccccch
Q 010539 192 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSK------------------MAFLDGNPPERLC 253 (508)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------------------~~~~~g~~~~~l~ 253 (508)
+++ ++..+.+.++.++..++|..+.+++|+.......... ...+++. +.+..|| ...|+
T Consensus 142 r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~-e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l~ 218 (444)
T COG1232 142 RRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARA-ERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSLI 218 (444)
T ss_pred HHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhh-hhhhcchhhhhhhccCcccccccccccccCcc-HHHHH
Confidence 998 8889999999999999999999999998433322221 1122222 3333444 78888
Q ss_pred HHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcC
Q 010539 254 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 333 (508)
Q Consensus 254 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 333 (508)
++|.+.+... |+++++|++|.++..+. .+++.+|+.+.||.||+|++++.+..++++. ...+.+.++.+.+
T Consensus 219 ~al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~s 289 (444)
T COG1232 219 EALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYTS 289 (444)
T ss_pred HHHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhccccc
Confidence 8888888654 99999999999853343 3666778789999999999999999999883 4457888899999
Q ss_pred EEEEEEEeccc----ccccccccccccCc-cceeecccccccccccCCCccEEEEEecCc--hhhcCCChHHHHHHHHHH
Q 010539 334 VINIHIWFDRK----LKNTYDHLLFSRSS-LLSVYADMSLTCKEYYNPNQSMLELVFAPA--EEWISCSDSEIIDATMKE 406 (508)
Q Consensus 334 ~~~v~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 406 (508)
..+|.+.++++ ..+.++.++..+++ +.+++ -.+..++...|.+.+++.+.+... +....++++|+++.++++
T Consensus 290 ~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~-~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~ 368 (444)
T COG1232 290 VVTVVVGLDEKDNPALPDGYGLLIADDDPYILAIT-FHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDD 368 (444)
T ss_pred eEEEEEEeccccccCCCCceEEEEecCCCcceeEE-EecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHH
Confidence 99999999986 34444444444445 44444 345667777777888888766543 333467799999999999
Q ss_pred HHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCC----CCCCCceEEecccccCCCCCcHHHHHHHHHHH
Q 010539 407 LAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQ----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLC 482 (508)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~a 482 (508)
|.++++...++ ..+.+.+|+.+++.|..|+.+....+ ....++|+++|.+... -|+++|+.+|..|
T Consensus 369 L~~~~~~~~~~-------~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~I~~g~~a 438 (444)
T COG1232 369 LKKLGGINGDP-------VFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDCIAAGKEA 438 (444)
T ss_pred HHHHcCcCcch-------hheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHHHHHHHHH
Confidence 99999886554 26788899999999999865443332 3234789999998876 4999999999999
Q ss_pred HHHHH
Q 010539 483 AQAIV 487 (508)
Q Consensus 483 A~~il 487 (508)
|++|+
T Consensus 439 a~~l~ 443 (444)
T COG1232 439 AEQLL 443 (444)
T ss_pred HHHhh
Confidence 99986
No 9
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=9.2e-33 Score=279.76 Aligned_cols=405 Identities=19% Similarity=0.272 Sum_probs=259.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHc-CCceEEEeccccCCCCC---------------------hhHHHHHHHcCCCCc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLVGAY---------------------PNIQNLFGELGINDR 111 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~-g~~V~vlE~~~~~~g~~---------------------~~~~~l~~~lg~~~~ 111 (508)
.+.++||+|||||++||+||++|+++ |++|+|||+++++||.. +.+..++++ |+...
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~ 87 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDD 87 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhh
Confidence 34667999999999999999999999 99999999999997752 223344444 55544
Q ss_pred cccccc-cceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHH
Q 010539 112 LQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 190 (508)
Q Consensus 112 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (508)
+.+... ...+.+. .+.... + |.. ...++ ....+++.++++........... ....+++++.+|
T Consensus 88 ~~~~~~~~~~~~~~--~g~~~~--~----p~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~sv~~~ 151 (496)
T PLN02576 88 LVFPDPQAPRYVVW--NGKLRP--L----PSN---PIDLP-TFDLLSAPGKIRAGLGAFGWKRP----PPPGREESVGEF 151 (496)
T ss_pred eecCCCCceEEEEE--CCEEEE--c----CCC---hHHhc-CcCcCChhHHHHHhHHHhhccCC----CCCCCCCcHHHH
Confidence 332211 1111100 111110 1 110 11111 12344555555443332211000 011357899999
Q ss_pred HHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHH-----------hhh-------------------ccCCe
Q 010539 191 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQE-------------------KHGSK 240 (508)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------------------~~g~~ 240 (508)
+.+. ++..+.+.++.++..++++.++++++....+..+... +.. ..+..
T Consensus 152 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (496)
T PLN02576 152 VRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQT 230 (496)
T ss_pred HHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCe
Confidence 9987 8889999999999999999999999998765443221 000 01122
Q ss_pred EEeecCCccccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCC-cEEEEEEcCC-cEEEccEEEEccChHHHhhhcCcch
Q 010539 241 MAFLDGNPPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDG-TVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPENW 317 (508)
Q Consensus 241 ~~~~~g~~~~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g-~~~~V~~~~g-~~i~ad~VI~A~~~~~~~~ll~~~~ 317 (508)
...+.+| +..|.+.|++.+ + .+|++|++|++|+..+++ ..+.+.+.+| +++.||+||+|+|+..+..|+++..
T Consensus 231 ~~~~~gG-~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~ 306 (496)
T PLN02576 231 VGSFRGG-LQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS 306 (496)
T ss_pred eEeccch-HHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC
Confidence 2333444 667777777665 3 589999999999985554 2222333355 3699999999999999999987532
Q ss_pred hccHHHHHHhhcCCcCEEEEEEEeccccccc-------cccccc---ccC--ccceeecccccccccccCCCccEEEEEe
Q 010539 318 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNT-------YDHLLF---SRS--SLLSVYADMSLTCKEYYNPNQSMLELVF 385 (508)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (508)
. .....+.++.+.++.+|++.|++++|.. ..++.+ ... ...++.++ +...+.+.+++..++..++
T Consensus 307 ~--~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~-s~~~p~~~~~~~~~l~~~~ 383 (496)
T PLN02576 307 P--AAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYS-SSLFPDRAPEGRVLLLNYI 383 (496)
T ss_pred H--HHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEee-cCcCCCCCCCCCEEEEEEE
Confidence 2 4567788899999999999999877643 111111 111 12223222 2334455555655555555
Q ss_pred cC--chhhcCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCC---CCC--CceE
Q 010539 386 AP--AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR---SPV--EGFY 458 (508)
Q Consensus 386 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~l~ 458 (508)
++ ...+.+.+++++++.++++|.+++|....+. +......+|..+.+.|.+++....+..+ ... ++||
T Consensus 384 ~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~-----p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~ 458 (496)
T PLN02576 384 GGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPP-----PKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLF 458 (496)
T ss_pred CCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCC-----CcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEE
Confidence 43 3566778999999999999999998532111 1233466788888888887533222111 222 7999
Q ss_pred EecccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010539 459 LAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491 (508)
Q Consensus 459 ~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~ 491 (508)
+||+++.+ .++++|+.||+++|++|+..+.
T Consensus 459 ~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 459 LGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred EeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999986 6999999999999999998864
No 10
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3e-33 Score=265.07 Aligned_cols=427 Identities=38% Similarity=0.550 Sum_probs=338.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC----------------------CCChhHHHHHHHcCCCCccccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV----------------------GAYPNIQNLFGELGINDRLQWK 115 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~----------------------g~~~~~~~l~~~lg~~~~~~~~ 115 (508)
++|+|+|||+|||+||+.|+++|++|+|+|+++++| |+|.++..++++++.+..+.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 479999999999999999999999999999999984 4588999999999999887777
Q ss_pred ccccee-ecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHc
Q 010539 116 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 194 (508)
Q Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (508)
.....+ ..+...+.+.++.... .|.+...+..++... .....++++++...............+++..++.+||++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRLP-QLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhcc-ccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 666655 6666667776676655 445555555555543 5666777777665554433224556778899999999999
Q ss_pred CCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhc-cCCeEEeecCCccccchHHHHHHHHHcCCEEEeCcee
Q 010539 195 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 273 (508)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V 273 (508)
+......+..+.++.....+..++..+.......+..++-.. .++.....++++.+.++..+.+.+.+.|.+++.+.+|
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv 238 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPV 238 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecccee
Confidence 999999999999999999999999999977776666655444 6666777888888999999999999999999999999
Q ss_pred eEEEEcC---CCcEEEEEEcCC--cEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEEeccccccc
Q 010539 274 QKIELND---DGTVKNFLLTNG--NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT 348 (508)
Q Consensus 274 ~~I~~~~---~g~~~~V~~~~g--~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 348 (508)
+.|..+. +..++++..... +.+.++.++.+.+...+..++|..+.+...++.+..+...++.+++++|+...+..
T Consensus 239 ~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~ 318 (485)
T COG3349 239 KELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTEL 318 (485)
T ss_pred eeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccc
Confidence 9999754 345667766522 34566677778888888888999888777788888888899999999999644321
Q ss_pred --------ccccccccCccceeecccccccccccCCCc-cEEEEEecCchhhcCCChHHHHHHHHHHHHHhCCCCccccc
Q 010539 349 --------YDHLLFSRSSLLSVYADMSLTCKEYYNPNQ-SMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQ 419 (508)
Q Consensus 349 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (508)
.+...++.....+.+.+....++.+..++. ..+.....+...|....++++.....+.+.+.+|......
T Consensus 319 ~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~- 397 (485)
T COG3349 319 TDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAK- 397 (485)
T ss_pred cccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhccc-
Confidence 122224555666666666665556666665 4444556777888888899999999999999998765432
Q ss_pred ccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 010539 420 SKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 492 (508)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~~ 492 (508)
...+....+++.+...|+....+|.+.+|++|++++||++.-.|.++||+|..||++||..|++.+..
T Consensus 398 -----~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 398 -----LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred -----ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhhh
Confidence 45677888999999999999999999999999999999999989899999999999999999998874
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=3.2e-32 Score=273.48 Aligned_cols=396 Identities=20% Similarity=0.252 Sum_probs=256.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CceEEEeccccCCCC---------------------ChhHHHHHHHcCCCCcccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLVGA---------------------YPNIQNLFGELGINDRLQW 114 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g--~~V~vlE~~~~~~g~---------------------~~~~~~l~~~lg~~~~~~~ 114 (508)
++|+|||||+|||+||+.|+++| ++|+|||+++++||. ++++.++++++|+......
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~ 80 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVA 80 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceec
Confidence 47999999999999999999987 899999999998653 3457789999998754332
Q ss_pred cc-ccceeecCCCCCCcccccCCC--CCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHH
Q 010539 115 KE-HSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM 191 (508)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 191 (508)
.. ....+.. .+.+..+.... ..+.. +..++ ........+++...... ........+++++.+|+
T Consensus 81 ~~~~~~~~~~---~g~~~~~p~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~l 147 (451)
T PRK11883 81 NTTGQSYIYV---NGKLHPIPPGTVMGIPTS---IAPFL-FAGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAFF 147 (451)
T ss_pred CCCCcceEEE---CCeEEECCCCCeeccCCC---chhhh-cCCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHHH
Confidence 21 1111111 11111110000 01110 11111 11222322333322111 00111223568999999
Q ss_pred HHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhh----------h-------ccCCeEEeecCCccccchH
Q 010539 192 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ----------E-------KHGSKMAFLDGNPPERLCL 254 (508)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-------~~g~~~~~~~g~~~~~l~~ 254 (508)
.+. +...+.+.++.++....+..++++++.......+..... . ..+..+..+.+| ...+.+
T Consensus 148 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~~ 225 (451)
T PRK11883 148 RRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG-LQSLIE 225 (451)
T ss_pred HHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH-HHHHHH
Confidence 875 777888899999999999999999988765433321110 0 112334455555 677777
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCE
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPV 334 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 334 (508)
.|.+.+... +|+++++|++|+.++++ +.|.+.+|+++.||+||+|+|+..+..++.++ +..+++..+.+.++
T Consensus 226 ~l~~~l~~~--~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~ 297 (451)
T PRK11883 226 ALEEKLPAG--TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSV 297 (451)
T ss_pred HHHHhCcCC--eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCce
Confidence 777766443 89999999999975443 34777788889999999999999999987653 33577788899999
Q ss_pred EEEEEEecccccccc--cccccc-cC--ccceeecccccccccccCCCccEEEEEecC-c-hhhcCCChHHHHHHHHHHH
Q 010539 335 INIHIWFDRKLKNTY--DHLLFS-RS--SLLSVYADMSLTCKEYYNPNQSMLELVFAP-A-EEWISCSDSEIIDATMKEL 407 (508)
Q Consensus 335 ~~v~~~~~~~~~~~~--~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l 407 (508)
.++++.|+++++... .++++. +. ++..+.++ +..++...|++..++...++. . ......+++++++.++++|
T Consensus 298 ~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 376 (451)
T PRK11883 298 ATVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADL 376 (451)
T ss_pred EEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHH
Confidence 999999998852211 223333 22 22233222 333455566666666554432 2 2335678999999999999
Q ss_pred HHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCC----CCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHH
Q 010539 408 AKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC----RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCA 483 (508)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA 483 (508)
.++++.... .....+.+|..+.+.+.+++... ++.+.. +++|||||+++.+ .++++|+.||+++|
T Consensus 377 ~~~~g~~~~-------~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~g---~~i~~av~sg~~~a 445 (451)
T PRK11883 377 SKVMGITGD-------PEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFEG---VGLPDCIAQAKRAA 445 (451)
T ss_pred HHHhCCCCC-------ceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccCC---ccHHHHHHHHHHHH
Confidence 999975322 23566777887777676664221 222233 6799999999874 68999999999999
Q ss_pred HHHHH
Q 010539 484 QAIVQ 488 (508)
Q Consensus 484 ~~il~ 488 (508)
++|++
T Consensus 446 ~~i~~ 450 (451)
T PRK11883 446 ARLLA 450 (451)
T ss_pred HHHHh
Confidence 99975
No 12
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=255.42 Aligned_cols=407 Identities=19% Similarity=0.145 Sum_probs=239.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh---------------------hHHHHHHHcCCCCccc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP---------------------NIQNLFGELGINDRLQ 113 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~---------------------~~~~l~~~lg~~~~~~ 113 (508)
++.+||||||||++||+||+.|.+.|++|+|||++++++|++. .+..+++++|+.....
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~f 84 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPF 84 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCce
Confidence 5789999999999999999999999999999999999977632 2345555666554433
Q ss_pred cccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHH
Q 010539 114 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 193 (508)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (508)
......+.......... |.........+.. ...+....+...............+.+.+++..| +.
T Consensus 85 i~~g~~~~~~~~~~~~~---------p~~~~~~~~d~~~----~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~~ 150 (450)
T COG1231 85 IRDGDNVIGYVGSSKST---------PKRSLTAAADVRG----LVAELEAKARSAGELDPGLTPEDRELDLESLAAW-KT 150 (450)
T ss_pred eccCccccccccccccc---------chhccchhhhhcc----hhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-hh
Confidence 33222221111100000 1100000010000 0001111111111111122222333445566666 10
Q ss_pred cCCChhhHHHHHHHHHhhccc--CCCCcchHHH------HHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcCC
Q 010539 194 QGVPDRVTTEVFIAMSKALNF--INPDELSMQC------ILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGG 265 (508)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~ 265 (508)
. .. +.+-......+.. .+..+..+.. ....+...+............|| +..|.+++.+.+ |-
T Consensus 151 ~--~~---~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GG-md~la~Afa~ql---~~ 221 (450)
T COG1231 151 S--SL---RGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGG-MDQLAEAFAKQL---GT 221 (450)
T ss_pred c--cc---cccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCcc-HHHHHHHHHHHh---hc
Confidence 0 00 0000000001111 1122221111 11111111111222222222233 555555555444 66
Q ss_pred EEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEEecccc
Q 010539 266 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKL 345 (508)
Q Consensus 266 ~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 345 (508)
.|+++.+|.+|.++++|+ .|++.+..++.+|+||+|+|+.++..+--++..+..+++++..+.|.+..++.+.|+++|
T Consensus 222 ~I~~~~~V~rI~q~~~gV--~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpF 299 (450)
T COG1231 222 RILLNEPVRRIDQDGDGV--TVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPF 299 (450)
T ss_pred eEEecCceeeEEEcCCeE--EEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecCchh
Confidence 899999999999877764 488887347999999999999999998666555557788888999999999999999999
Q ss_pred ccccc---ccccccCccceeecccccccccccCCCccEEEE-Ee--cCchhhcCCChHHHHHHHHHHHHHhCCCCccccc
Q 010539 346 KNTYD---HLLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL-VF--APAEEWISCSDSEIIDATMKELAKLFPDEISADQ 419 (508)
Q Consensus 346 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (508)
|+..+ +..+.+..+..++.+.. ....|..++.- +. ..+..|..+++++..+.++..+.++||+......
T Consensus 300 Wee~~~l~G~~~tD~~~~~i~~~s~-----~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f 374 (450)
T COG1231 300 WEEAGILGGESLTDLGLGFISYPSA-----PFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPF 374 (450)
T ss_pred hhhcccCCceEeecCCcceEecCcc-----ccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhcccc
Confidence 97544 55566666444433222 12234444443 22 3368899999999999999999999996443222
Q ss_pred ccceEEEeeEeecCCceecc-CCC-CCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010539 420 SKAKIVKYHVVKTPRSVYKT-IPN-CEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491 (508)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~ 491 (508)
.-....+|.-..|..+.+.+ .++ .....+.+..|.++|||||....+.+.++++||++||++||.+|...+.
T Consensus 375 ~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 375 DYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred ccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 11123344444444453333 333 4566777889999999999666677889999999999999999988663
No 13
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2.5e-32 Score=271.90 Aligned_cols=392 Identities=20% Similarity=0.228 Sum_probs=224.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh-----------------------hHHHHHHHcCCCCcccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP-----------------------NIQNLFGELGINDRLQW 114 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~-----------------------~~~~l~~~lg~~~~~~~ 114 (508)
.+|+|||||+|||+||+.|.+.|++|+|||+++++||... .+.++++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 4799999999999999999999999999999999976521 24466667776432110
Q ss_pred ccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHc
Q 010539 115 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 194 (508)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (508)
. ...+........+..+. ....+.+......+. ..+..+....... .....+++++.+|+++.
T Consensus 81 ~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~ 143 (435)
T PLN02268 81 G--DNSVLYDHDLESYALFD-MDGNQVPQELVTKVG---------ETFERILEETEKV-----RDEHEEDMSLLQAISIV 143 (435)
T ss_pred C--Cccccccccccccceec-CCCCCCCHHHHHHHH---------HHHHHHHHHHHHH-----HhccCCCcCHHHHHHHH
Confidence 0 00000000000000000 000011111110000 0000000000000 00123567888887653
Q ss_pred CCC------hhhHHHHHHHH---HhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcCC
Q 010539 195 GVP------DRVTTEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGG 265 (508)
Q Consensus 195 ~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~ 265 (508)
... ..+.+.++..+ ...++..++++++...... . ....|.. ..+.+| +..+ .+.+. .++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~---~~~~g~~-~~~~~G-~~~l----~~~l~-~~~ 211 (435)
T PLN02268 144 LERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--E---ELLEGGH-GLMVRG-YDPV----INTLA-KGL 211 (435)
T ss_pred hhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--c---cccCCCc-eeecCC-HHHH----HHHHh-ccC
Confidence 111 11333333322 2345566788877643100 0 0001111 122222 3333 33433 367
Q ss_pred EEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh--cCcchhccHHHHHHhhcCCcCEEEEEEEecc
Q 010539 266 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ--LPENWKEMAYFKRLEKLVGVPVINIHIWFDR 343 (508)
Q Consensus 266 ~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l--l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 343 (508)
+|+++++|++|..++++. .|++.+|+++.||+||+|+|+..++.+ ...+..+....++++++.+....|+.+.|++
T Consensus 212 ~i~~~~~V~~i~~~~~~v--~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~ 289 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGV--KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDS 289 (435)
T ss_pred ceeCCCeeEEEEEcCCcE--EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCC
Confidence 899999999999865553 478888878999999999999999753 2223344455778889999999999999999
Q ss_pred cccccccccc--cccCccceeecccccccccccCCCccEEEEEecC--chhhcCCChHHHHHHHHHHHHHhCCCCccccc
Q 010539 344 KLKNTYDHLL--FSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISADQ 419 (508)
Q Consensus 344 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (508)
++|+....+. .........+.+. ...++..++..+.++ +..+.+++++++++.++++|.+++|....+
T Consensus 290 ~fw~~~~~~g~~~~~~~~~~~~~~~------~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p-- 361 (435)
T PLN02268 290 VFWPNVEFLGVVAPTSYGCSYFLNL------HKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEP-- 361 (435)
T ss_pred CCCCCCceeeccCCCCCCceEEEec------ccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCc--
Confidence 9986432111 1111111111111 112344455444444 366778999999999999999999863332
Q ss_pred ccceEEEeeEeecCC--ceeccC-CCC-CCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 010539 420 SKAKIVKYHVVKTPR--SVYKTI-PNC-EPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDY 490 (508)
Q Consensus 420 ~~~~~~~~~~~~~~~--~~~~~~-~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l 490 (508)
.. ...+.|...|. |.|.+. |+. ....+.++.|+++|||||++++..|+++|+||+.||++||++|++.|
T Consensus 362 ~~--~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 362 VQ--YLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cE--EEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 21 22223333333 444432 332 22334567889999999999999888999999999999999999765
No 14
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-31 Score=268.52 Aligned_cols=404 Identities=19% Similarity=0.249 Sum_probs=261.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC---------------------ChhHHHHHHHcCCCCcccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA---------------------YPNIQNLFGELGINDRLQW 114 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~---------------------~~~~~~l~~~lg~~~~~~~ 114 (508)
+++||+|||||++||+||+.|+++|++|+|+|+++++||. ++.+.+++++++....+..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~~ 82 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFLL 82 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCcccc
Confidence 5679999999999999999999999999999999998663 3456788888875332222
Q ss_pred ccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHc
Q 010539 115 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 194 (508)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (508)
......+.. .+.+.. + | .. ....+. .+.+....+.......... ....+.+++.+|+.+.
T Consensus 83 ~~~~~~~~~---~g~~~~--~----p--~~-~~~~l~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~e~l~~~ 142 (479)
T PRK07208 83 RPRLSRIYY---RGKFFD--Y----P--LK-AFDALK---NLGLWRTAKCGASYLKARL-----RPRKEEDSFEDWVINR 142 (479)
T ss_pred ccccceEEE---CCEEec--C----C--cc-hhHHHH---hCCHhHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHh
Confidence 111111111 111111 1 1 00 011111 1122222222221111100 0112468999999986
Q ss_pred CCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHH---------HHHhhhc-------------cCCeEEeecCCccccc
Q 010539 195 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIAL---------NRFLQEK-------------HGSKMAFLDGNPPERL 252 (508)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-------------~g~~~~~~~g~~~~~l 252 (508)
+...+.+.++.++...+|..++++++..+....+ ...+... ....+.++.|| ...+
T Consensus 143 -~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~~l 220 (479)
T PRK07208 143 -FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLG-PGQL 220 (479)
T ss_pred -hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCC-cchH
Confidence 6778899999999999999999999987644221 1111110 01235566665 7899
Q ss_pred hHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--CCc--EEEccEEEEccChHHHhhhcCcchhccHHHHHHhh
Q 010539 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 328 (508)
Q Consensus 253 ~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~ 328 (508)
.+.|.+.+++.|++|+++++|++|..++++.++.++.. +|+ ++.||+||+|+|++.+..++++. .+......+..
T Consensus 221 ~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~~ 299 (479)
T PRK07208 221 WETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAAG 299 (479)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHhC
Confidence 99999999999999999999999998655544444442 342 58999999999999888887632 22355666778
Q ss_pred cCCcCEEEEEEEeccccccccccccccc-CccceeecccccccccccCCCcc-EEEE-Ee-cCchhhcCCChHHHHHHHH
Q 010539 329 LVGVPVINIHIWFDRKLKNTYDHLLFSR-SSLLSVYADMSLTCKEYYNPNQS-MLEL-VF-APAEEWISCSDSEIIDATM 404 (508)
Q Consensus 329 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~ 404 (508)
+.+.++.++++.++++........++.+ ....+.....+...+...|++.+ .+.. ++ ....+...++++++++.++
T Consensus 300 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~ 379 (479)
T PRK07208 300 LRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAI 379 (479)
T ss_pred CCcceeEEEEEEecCCCCCCCceEEecCCCCccceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHH
Confidence 8888999999999987532222222222 11112221223333455566663 3322 22 2223344788999999999
Q ss_pred HHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCC---CCCCCCceEEecccccCCCCCcHHHHHHHHHH
Q 010539 405 KELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPL---QRSPVEGFYLAGDYTKQKYLASMEGAVLSGKL 481 (508)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~ 481 (508)
++|.++... . ...+....+.+++.+.+.|..++....+. +.++.+|||+||++....| .++++|+.||..
T Consensus 380 ~~L~~l~~~-~-----~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~a~~sg~~ 452 (479)
T PRK07208 380 QELARLGLI-R-----PADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDHSMLTAML 452 (479)
T ss_pred HHHHHcCCC-C-----hhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhHHHHHHHH
Confidence 999997432 1 12266777888999998888775433222 2356789999999887666 599999999999
Q ss_pred HHHHHHHH
Q 010539 482 CAQAIVQD 489 (508)
Q Consensus 482 aA~~il~~ 489 (508)
+|++|++.
T Consensus 453 ~a~~i~~~ 460 (479)
T PRK07208 453 AVENIIAG 460 (479)
T ss_pred HHHHHhcC
Confidence 99998876
No 15
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=1.3e-30 Score=259.67 Aligned_cols=394 Identities=28% Similarity=0.398 Sum_probs=262.4
Q ss_pred HHHHHHHHcCCceEEEeccccCCCC-----------------------ChhHHHHHHHcCCCCccccccccceeecCCCC
Q 010539 71 STAKYLADAGHKPLLLEARDVLVGA-----------------------YPNIQNLFGELGINDRLQWKEHSMIFAMPNKP 127 (508)
Q Consensus 71 saA~~L~~~g~~V~vlE~~~~~~g~-----------------------~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~ 127 (508)
+||+.|+++|++|+|||+++++||. ++++.++++++|++...........+..+ .
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~--~ 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDP--G 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecC--C
Confidence 5899999999999999999999654 35667889999987654321111111111 1
Q ss_pred CCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHcCCChhhHHHHHHH
Q 010539 128 GEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIA 207 (508)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 207 (508)
+....+.. ...+.+...... +.....++..++.++...+....... ....+..++.+|+++.+.+..+.+.++.+
T Consensus 79 ~~~~~~~~-~~~~~p~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~p 153 (419)
T TIGR03467 79 GRLSRLRL-SRLPAPLHLARG-LLRAPGLSWADKLALARALLALRRTR---FRALDDTTVGDWLQAAGQSERLIERLWEP 153 (419)
T ss_pred CCceeecC-CCCCCCHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHhcC---ccccCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 11111111 112223222222 22234455555555443322211111 12346789999999988888888889999
Q ss_pred HHhhcccCCCCcchHHHHHHHHHHHh-hhccCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEE
Q 010539 208 MSKALNFINPDELSMQCILIALNRFL-QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN 286 (508)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~ 286 (508)
+...++..++++++..+....+...+ ....+..+.++.+|....+.+.|.+.+++.|++|++|++|++|+.++++..+
T Consensus 154 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~- 232 (419)
T TIGR03467 154 LLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRA- 232 (419)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceE-
Confidence 99999999999999887766554322 2223345667776633334455888998899999999999999985554332
Q ss_pred EEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEEecccccccccccccccCccceeeccc
Q 010539 287 FLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADM 366 (508)
Q Consensus 287 V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (508)
+...+|+++.||.||+|+|+..+..|+++. .....+.++.+.++.++++.|++++|...+...+.......++ +.
T Consensus 233 ~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 307 (419)
T TIGR03467 233 LVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLVGGLAQWLF-DR 307 (419)
T ss_pred EEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeecCCceeEEE-EC
Confidence 223466679999999999999999998763 3346778889999999999999998644333222222222111 21
Q ss_pred ccccccccCCCccEEEEEecCchhhcCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCC
Q 010539 367 SLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPC 446 (508)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (508)
+. . ++...++.+++.+.+.+...+++++.+.++++|.+++|...... +....+.++..+.|.+.++....
T Consensus 308 ~~----~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~ 377 (419)
T TIGR03467 308 GQ----L-AGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAK-----PLWARVIKEKRATFAATPGLNRL 377 (419)
T ss_pred Cc----C-CCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCC-----ccceEEEEccCCccccCCccccc
Confidence 11 1 12224444455556677788999999999999999998642211 22334555666666666766556
Q ss_pred CCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 010539 447 RPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487 (508)
Q Consensus 447 ~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il 487 (508)
++.+..|+++||||||+++++++++|+||+.||.+||++|+
T Consensus 378 ~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 378 RPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 67677889999999999999887899999999999999986
No 16
>PLN02676 polyamine oxidase
Probab=100.00 E-value=3.1e-31 Score=263.68 Aligned_cols=237 Identities=18% Similarity=0.174 Sum_probs=163.4
Q ss_pred ccccchHHHHHHHHHc------CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh--hcCcchhc
Q 010539 248 PPERLCLPIVEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKE 319 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~------g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~--ll~~~~~~ 319 (508)
+...|++.|.+.+.+. +.+|++|++|++|+.++++. .|++.+|+++.||+||+|+|+.+++. +...+..+
T Consensus 222 G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV--~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP 299 (487)
T PLN02676 222 GYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGV--TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP 299 (487)
T ss_pred CHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcE--EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCC
Confidence 3678888888776433 36799999999999865553 48888998899999999999999986 54444455
Q ss_pred cHHHHHHhhcCCcCEEEEEEEecccccccc-ccc--ccccCccceeecccccccccccCCCccEEEEEecC--chhhcCC
Q 010539 320 MAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHL--LFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISC 394 (508)
Q Consensus 320 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 394 (508)
....++++.+.+....|+++.|+++||+.- ... .+.+... +.+..+.. . ....++..++..++.+ +..+...
T Consensus 300 ~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~l~~~~~g~~a~~~~~~ 376 (487)
T PLN02676 300 DWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERR-GYYPFWQH-L-ENEYPGSNVLFVTVTDEESRRIEQQ 376 (487)
T ss_pred HHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeecccc-ccchhhhh-c-ccCCCCCCEEEEEechHHHHHHHhC
Confidence 566788889999999999999999999751 111 1111100 00000000 0 0112333444444443 4667789
Q ss_pred ChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCC--ceecc-CCCC-CCCCCCCCCCCCceEEecccccCCCCC
Q 010539 395 SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR--SVYKT-IPNC-EPCRPLQRSPVEGFYLAGDYTKQKYLA 470 (508)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~~~~l~~aG~~~~~~~~~ 470 (508)
++++..+.+++.|.++||.... .+ .....+.|...|. |.|.+ .|+. ....+.++.|+++|||||++++..|++
T Consensus 377 s~e~~~~~vl~~L~~~~g~~~~-~p--~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g 453 (487)
T PLN02676 377 PDSETKAEIMEVLRKMFGPNIP-EA--TDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNG 453 (487)
T ss_pred CHHHHHHHHHHHHHHHhCCCCC-Cc--ceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccccccc
Confidence 9999999999999999985321 11 1233334444444 44443 3342 233456678999999999999998899
Q ss_pred cHHHHHHHHHHHHHHHHHHHHH
Q 010539 471 SMEGAVLSGKLCAQAIVQDYVL 492 (508)
Q Consensus 471 ~~~gA~~sg~~aA~~il~~l~~ 492 (508)
+|+||+.||++||++|++.++.
T Consensus 454 ~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 454 YVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred chHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998754
No 17
>PLN02529 lysine-specific histone demethylase 1
Probab=99.98 E-value=8.1e-30 Score=259.34 Aligned_cols=395 Identities=18% Similarity=0.182 Sum_probs=222.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh--------------------------HHHHHHHcCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN--------------------------IQNLFGELGI 108 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~--------------------------~~~l~~~lg~ 108 (508)
...+||+|||||++||+||..|+++|++|+|||++++++|.... +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 45689999999999999999999999999999999988665322 2233334443
Q ss_pred CCccccccccceeecCCCCCCcccccCCCCCCCchh---HHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCc
Q 010539 109 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN---GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGL 185 (508)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (508)
+.... .....+|. .++.+.... .+...+ ...++......... . ...++.
T Consensus 238 ~~~~~-~~~~~~~~-------------~~G~~v~~~~~~~~~~~~--------~~~l~~~~~l~~~~----~--~~~~d~ 289 (738)
T PLN02529 238 PLHKV-RDNCPLYK-------------PDGALVDKEIDSNIEFIF--------NKLLDKVTELRQIM----G--GFANDI 289 (738)
T ss_pred Ccccc-CCCceEEe-------------CCCcCcchhhhhhHHHHH--------HHHHHHHHHHHHhc----c--cCccCC
Confidence 22110 00000111 111111000 000000 00000000000000 0 123467
Q ss_pred cHHHHHHHcCC-----ChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHH
Q 010539 186 TVQEWMRKQGV-----PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 260 (508)
Q Consensus 186 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l 260 (508)
++.+|+++... .......++..............++......... ......+.....+.|| +.+|++.|++
T Consensus 290 Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~-~~~~e~~G~~~~i~GG-~~~Li~aLA~-- 365 (738)
T PLN02529 290 SLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQ-DDPYEMGGDHCFLAGG-NWRLINALCE-- 365 (738)
T ss_pred CHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhh-ccccccCCceEEECCc-HHHHHHHHHh--
Confidence 88888875421 1111223344333333333444443322221111 1111223344445555 5566666654
Q ss_pred HHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh--hcCcchhccHHHHHHhhcCCcCEEEEE
Q 010539 261 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIH 338 (508)
Q Consensus 261 ~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~~~~~~~~v~ 338 (508)
++.|++|++|++|.++++++ .|++ +++++.||+||+|+|+.+++. +...+..+....+++.++.+.++.||+
T Consensus 366 ---~L~IrLnt~V~~I~~~~dGV--tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~ 439 (738)
T PLN02529 366 ---GVPIFYGKTVDTIKYGNDGV--EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVA 439 (738)
T ss_pred ---cCCEEcCCceeEEEEcCCeE--EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEE
Confidence 45799999999999865553 3655 445799999999999999984 333333444667889999999999999
Q ss_pred EEecccccccc-ccccc--ccCccceee-cccccccccccCCCccEEEEEecC--chhhcCCChHHHHHHHHHHHHHhCC
Q 010539 339 IWFDRKLKNTY-DHLLF--SRSSLLSVY-ADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLFP 412 (508)
Q Consensus 339 ~~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (508)
+.|++++|+.. +.+.+ ......+.+ ...+ ....++..++..++.+ +..+..++++++++.++++|.++|+
T Consensus 440 L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~----~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifg 515 (738)
T PLN02529 440 MVFPSVFWGEELDTFGCLNESSNKRGEFFLFYG----YHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYN 515 (738)
T ss_pred EEeCCccccCCCCceEEEeccCCCCceEEEEec----CCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 99999998642 22111 111111111 0001 0111233344444433 3667788999999999999999997
Q ss_pred CCc--ccccccceEEEeeEeecCC--ceeccCC-C-CCCCCCCCCCC-CCceEEecccccCCCCCcHHHHHHHHHHHHHH
Q 010539 413 DEI--SADQSKAKIVKYHVVKTPR--SVYKTIP-N-CEPCRPLQRSP-VEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 485 (508)
Q Consensus 413 ~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~-~-~~~~~~~~~~~-~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~ 485 (508)
... .+.+.. +..+.|...|. |.|.+.. + .......+..| .++|||||++++..|+++|+||+.||++||++
T Consensus 516 p~~~~vp~Pi~--~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~e 593 (738)
T PLN02529 516 PKGINVPDPIQ--TICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASR 593 (738)
T ss_pred ccccccCCceE--EEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHH
Confidence 421 112221 22233333333 4454432 2 11111233455 57999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010539 486 IVQDYVLL 493 (508)
Q Consensus 486 il~~l~~~ 493 (508)
|++.+++.
T Consensus 594 Il~~l~~~ 601 (738)
T PLN02529 594 ILHVARSQ 601 (738)
T ss_pred HHHHHhhh
Confidence 99988663
No 18
>PLN02568 polyamine oxidase
Probab=99.98 E-value=2.3e-30 Score=258.94 Aligned_cols=243 Identities=19% Similarity=0.218 Sum_probs=159.3
Q ss_pred eecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh------hcCcc
Q 010539 243 FLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL------QLPEN 316 (508)
Q Consensus 243 ~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~------ll~~~ 316 (508)
.+.+| ...|++.|.+.+. +.+|+++++|++|..++++ +.|++.+|+++.||+||+|+|+.+++. +...+
T Consensus 236 ~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P 310 (539)
T PLN02568 236 TIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP--VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSP 310 (539)
T ss_pred EECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecC
Confidence 34444 6677888877763 3479999999999985444 348888888899999999999999985 23334
Q ss_pred hhccHHHHHHhhcCCcCEEEEEEEecccccccccc------c--ccccCcc------ceeecccccccccccCCCccEEE
Q 010539 317 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH------L--LFSRSSL------LSVYADMSLTCKEYYNPNQSMLE 382 (508)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 382 (508)
..+....++++.+.+..+.||++.|++++|..... + ++.++.. ...+......... ...+..++.
T Consensus 311 ~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vL~ 389 (539)
T PLN02568 311 PLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP-IHKNSSVLL 389 (539)
T ss_pred CCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc-cCCCCCEEE
Confidence 44446678999999999999999999998742111 1 1111100 0000000000000 112344554
Q ss_pred EEecC--chhhcCCChHHHHHHHHHHHHHhCCCCccc-------------------ccccceEEEeeEeecCC--ceecc
Q 010539 383 LVFAP--AEEWISCSDSEIIDATMKELAKLFPDEISA-------------------DQSKAKIVKYHVVKTPR--SVYKT 439 (508)
Q Consensus 383 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~--~~~~~ 439 (508)
.++.+ +..+.+++++++++.+++.|.++||..... ......+....|...|. |.|.+
T Consensus 390 ~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~ 469 (539)
T PLN02568 390 SWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSY 469 (539)
T ss_pred EEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCC
Confidence 45444 477888999999999999999999853210 01112233333443344 55555
Q ss_pred C-CCC-CCCCCCCCCCCC-------------ceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010539 440 I-PNC-EPCRPLQRSPVE-------------GFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491 (508)
Q Consensus 440 ~-~~~-~~~~~~~~~~~~-------------~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~ 491 (508)
. ++. ......++.|++ +|||||++|+..|+++|+||+.||+++|++|+..++
T Consensus 470 ~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 470 VAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 4 342 222334455553 799999999999999999999999999999998764
No 19
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.97 E-value=1.6e-29 Score=257.99 Aligned_cols=245 Identities=17% Similarity=0.179 Sum_probs=160.6
Q ss_pred eEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh--hcCcch
Q 010539 240 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENW 317 (508)
Q Consensus 240 ~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~--ll~~~~ 317 (508)
....+.|| ...|++.|++.+ .|+++++|++|.+.++++ .| +.+|+++.||+||+|+|+.+++. +...+.
T Consensus 428 ~~~~v~GG-~~~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV--~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~ 498 (808)
T PLN02328 428 DHCFIPGG-NDTFVRELAKDL-----PIFYERTVESIRYGVDGV--IV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE 498 (808)
T ss_pred eEEEECCc-HHHHHHHHHhhC-----CcccCCeeEEEEEcCCeE--EE-EeCCeEEEcCEEEECCCHHHHhhcccccCCC
Confidence 34455555 677777777654 499999999999865553 24 45677899999999999999984 322333
Q ss_pred hccHHHHHHhhcCCcCEEEEEEEecccccccc-ccc--ccccCccceeecccccccccccCCCccEEEEEecC--chhhc
Q 010539 318 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHL--LFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWI 392 (508)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 392 (508)
.+....++++++.+..+.||++.|++++|+.. +.+ +..+....+.+..+... ....+..++..++.+ +..+.
T Consensus 499 LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~---s~~~G~~vLvafv~G~~A~~~e 575 (808)
T PLN02328 499 LPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSY---SSVSGGPLLIALVAGDAAVKFE 575 (808)
T ss_pred CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecC---CCCCCCcEEEEEecChhhHHHh
Confidence 44466788999999999999999999998743 211 12222222221100000 011334455555444 36677
Q ss_pred CCChHHHHHHHHHHHHHhCCCC--cccccccceEEEeeEeecCCceeccC-CCC-CCCCCCCCCCC--CceEEecccccC
Q 010539 393 SCSDSEIIDATMKELAKLFPDE--ISADQSKAKIVKYHVVKTPRSVYKTI-PNC-EPCRPLQRSPV--EGFYLAGDYTKQ 466 (508)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~--~~l~~aG~~~~~ 466 (508)
+++++++++.++++|.++|+.. ..+.+....+.+|.-..+..|.|.+. ++. ....+.+..|+ ++|||||++++.
T Consensus 576 ~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 576 TLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 8899999999999999999742 11222222222333223333455443 232 12233445554 589999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010539 467 KYLASMEGAVLSGKLCAQAIVQDYVLLAAR 496 (508)
Q Consensus 467 ~~~~~~~gA~~sg~~aA~~il~~l~~~~~~ 496 (508)
.|+++|+||+.||+++|.+|++.++..+.+
T Consensus 656 ~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~ 685 (808)
T PLN02328 656 QYPATMHGAFLSGMREAANILRVARRRSLC 685 (808)
T ss_pred CCCeEhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 888999999999999999999998775443
No 20
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.2e-29 Score=248.90 Aligned_cols=223 Identities=25% Similarity=0.317 Sum_probs=166.3
Q ss_pred CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh--hcCcchhccHHHHHHhhcCCcCEEEEEEEe
Q 010539 264 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHIWF 341 (508)
Q Consensus 264 g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 341 (508)
|++|+++..|.+|.+.+++. +.+++.++..+.+|+||+|++..+++. +...++.+....++|+++....+.+|.+.|
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F 306 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEF 306 (501)
T ss_pred CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEe
Confidence 89999999999999976665 235556665699999999999999988 666666777889999999999999999999
Q ss_pred cccccc-ccccccc--ccCccce--eecccccccccccCCCccEEEEEecC-chhhcCCChHHHHHHHHHHHHHhCCCCc
Q 010539 342 DRKLKN-TYDHLLF--SRSSLLS--VYADMSLTCKEYYNPNQSMLELVFAP-AEEWISCSDSEIIDATMKELAKLFPDEI 415 (508)
Q Consensus 342 ~~~~~~-~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 415 (508)
++.+|+ ..+.+.. ......+ .+.++. ..+ ....++....+. ++.+.+++++++++.++..|.++|+...
T Consensus 307 ~~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~----~~~-~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~ 381 (501)
T KOG0029|consen 307 PRVFWDQDIDFFGIVPETSVLRGLFTFYDCK----PVA-GHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEE 381 (501)
T ss_pred ccccCCCCcCeEEEccccccccchhhhhhcC----ccC-CCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCc
Confidence 999995 2222221 1111112 111111 111 112344433333 5778899999999999999999999545
Q ss_pred ccccccceEEEeeEeecCCceeccCC-CCCCC-CCCCCCCCCc-eEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 010539 416 SADQSKAKIVKYHVVKTPRSVYKTIP-NCEPC-RPLQRSPVEG-FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVL 492 (508)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~-l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~~ 492 (508)
.+.+....+.+|.......+.|.+.+ +.... ...++.|+.+ +||||++|.-.|.++|+||+.||.++|..|++.+..
T Consensus 382 ~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 382 VPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred CCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 56666777778877777777777644 22111 2455778877 999999999999999999999999999999999985
No 21
>PLN03000 amine oxidase
Probab=99.97 E-value=1.7e-29 Score=257.40 Aligned_cols=241 Identities=17% Similarity=0.234 Sum_probs=162.9
Q ss_pred eEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh--hhcCcch
Q 010539 240 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENW 317 (508)
Q Consensus 240 ~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~--~ll~~~~ 317 (508)
....+.|| ...|++.|++.+ .|+++++|++|.+++++. .|++.+ +++.||+||+|+|+.+++ .+...+.
T Consensus 372 ~~~~v~GG-~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV--~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~Pp 442 (881)
T PLN03000 372 DHCFLPGG-NGRLVQALAENV-----PILYEKTVQTIRYGSNGV--KVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPE 442 (881)
T ss_pred ceEEeCCC-HHHHHHHHHhhC-----CcccCCcEEEEEECCCeE--EEEECC-cEEEeceEEEcCCHHHHhhCceeeCCC
Confidence 34445555 678888777655 499999999999865553 366654 479999999999999999 3443344
Q ss_pred hccHHHHHHhhcCCcCEEEEEEEecccccccc-ccc--ccccCccceeecccccccccccC-CCccEEEEEecC--chhh
Q 010539 318 KEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHL--LFSRSSLLSVYADMSLTCKEYYN-PNQSMLELVFAP--AEEW 391 (508)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 391 (508)
.+....+++.++.+..+.||++.|+++||+.- +.+ +..+....+.++. +..+.+ .+..++..++.+ +..+
T Consensus 443 LP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~----f~s~sp~~G~pVLvafv~Gd~A~~l 518 (881)
T PLN03000 443 LPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFL----FYSYAPVAGGPLLIALVAGEAAHKF 518 (881)
T ss_pred CCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEE----EeCCCCCCCCcEEEEEecCchhHHh
Confidence 44466789999999999999999999999643 222 1111111111110 111222 344455444444 3678
Q ss_pred cCCChHHHHHHHHHHHHHhCCCC-c-ccccccceEEEeeEeecCCceeccC-CC-CCCCCCCCCCCC--CceEEeccccc
Q 010539 392 ISCSDSEIIDATMKELAKLFPDE-I-SADQSKAKIVKYHVVKTPRSVYKTI-PN-CEPCRPLQRSPV--EGFYLAGDYTK 465 (508)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~l~~aG~~~~ 465 (508)
.+++++++++.++++|.++|+.. . .+.+....+.+|.-..+-.|.|.+. ++ .......+..|+ ++|||||++++
T Consensus 519 e~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs 598 (881)
T PLN03000 519 ETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATT 598 (881)
T ss_pred hcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHh
Confidence 88999999999999999999732 1 1223322333333333344555553 33 222334456675 58999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 010539 466 QKYLASMEGAVLSGKLCAQAIVQDYVLL 493 (508)
Q Consensus 466 ~~~~~~~~gA~~sg~~aA~~il~~l~~~ 493 (508)
..|+++|+||+.||++||.+|++.++..
T Consensus 599 ~~~~GTVhGAieSGlRAA~eIl~~l~~~ 626 (881)
T PLN03000 599 RRYPATMHGAFVTGLREAANMAQSAKAR 626 (881)
T ss_pred CCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence 9899999999999999999999999774
No 22
>PLN02976 amine oxidase
Probab=99.97 E-value=5.4e-29 Score=259.86 Aligned_cols=243 Identities=16% Similarity=0.161 Sum_probs=164.7
Q ss_pred EEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcC--------CCcEEEEEEcCCcEEEccEEEEccChHHHh--
Q 010539 241 MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--------DGTVKNFLLTNGNVIDGDAYVFATPVDILK-- 310 (508)
Q Consensus 241 ~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~--------~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~-- 310 (508)
...+.|| +..|++.|++.+ .|++|++|++|.+.. ++.-+.|++.+|+++.||+||+|+|+.+++
T Consensus 928 ~~rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 928 HCMIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred eEEeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 3344454 667777776543 599999999999841 112235888899889999999999999987
Q ss_pred hhcCcchhccHHHHHHhhcCCcCEEEEEEEecccccccc-ccccc--ccCccceeecccccccccccCCCccEEEEEecC
Q 010539 311 LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY-DHLLF--SRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP 387 (508)
Q Consensus 311 ~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (508)
.+...+..+.....++..+.+....||++.|+++||+.. +.+.. .+....+.++. .+....+.+..++..++.+
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~---~wnlr~psG~pVLVafv~G 1078 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFM---FWNVKKTVGAPVLIALVVG 1078 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEE---eccCCCCCCCCEEEEEecc
Confidence 354445555566788999999999999999999999752 22211 11112222110 1111222343444444443
Q ss_pred --chhhcCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccC-CCC-CCCCCCCCCCCCc-eEEecc
Q 010539 388 --AEEWISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTI-PNC-EPCRPLQRSPVEG-FYLAGD 462 (508)
Q Consensus 388 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-l~~aG~ 462 (508)
+..+..++++++++.+++.|.++||....+.+....+.+|....+-.|.|.|. ||. ......+..|+++ |||||+
T Consensus 1079 ~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGE 1158 (1713)
T PLN02976 1079 KAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGE 1158 (1713)
T ss_pred HhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEeh
Confidence 35677889999999999999999996432333333333333333344556554 442 2233456778776 999999
Q ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 010539 463 YTKQKYLASMEGAVLSGKLCAQAIVQDYVL 492 (508)
Q Consensus 463 ~~~~~~~~~~~gA~~sg~~aA~~il~~l~~ 492 (508)
+++..|+++|+||+.||+++|.+|+..+..
T Consensus 1159 ATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1159 ATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred hhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998854
No 23
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=3.7e-28 Score=245.38 Aligned_cols=408 Identities=21% Similarity=0.247 Sum_probs=234.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC-----------------------hhHHHHHHHcCCCCc-cc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY-----------------------PNIQNLFGELGINDR-LQ 113 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~-----------------------~~~~~l~~~lg~~~~-~~ 113 (508)
.||||||||++||+||..|+++|++|+|||+++.+||+. .....+++++|+... +.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 689999999999999999999999999999999986641 124477888887532 11
Q ss_pred cccccceeecCCCCCCcccccCCCC-----------CCCch---hHHHHHHh-------cCCC---CChHHHHHHhhcch
Q 010539 114 WKEHSMIFAMPNKPGEFSRFDFPEV-----------LPAPL---NGILAILR-------NNEM---LTWPEKVKFAIGLL 169 (508)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~-------~~~~---~~~~~~~~~~~~~~ 169 (508)
..........+. +. ..+.+..+ .|... ..+..... .... ....+....+....
T Consensus 82 ~~d~~~~~~~~d--g~-~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (492)
T TIGR02733 82 ILDPACAVDLPD--GS-EPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALR 158 (492)
T ss_pred cCCCCcEEEECC--Cc-eEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcC
Confidence 111111111111 10 00110000 11110 00000000 0000 00111111110000
Q ss_pred hhHhcCcchhhcccCccHHHHHHHcC-CChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCc
Q 010539 170 PAIIGGQAYVEAQDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNP 248 (508)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 248 (508)
+. ..........++.+|+++.+ +.....+.++......+...++++.+..+....+ .+..... ...++.||
T Consensus 159 ~~----~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--G~~~~~GG- 230 (492)
T TIGR02733 159 PD----TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVL-QMAQAPH--GLWHLHGS- 230 (492)
T ss_pred hh----hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHh-hccccCC--CceeecCc-
Confidence 00 00011123468888988764 3334444455443322333444455544432211 1111112 23456666
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-----cEEEccEEEEccChHHHhhhcCcchhccHHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYF 323 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~ 323 (508)
.+.|++.|.+.+++.|++|+++++|++|..+ ++.+++|.+.+| +++.||+||+++++..+..|+++...+....
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~ 309 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYR 309 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHH
Confidence 7899999999999999999999999999984 444445665444 5799999999999999988987644444566
Q ss_pred HHHhhcCCcC-EEEEEEEecccccc-cc-cc--cccccCccceeecccccccccccCCCccEEEE-EecCchhhcCC---
Q 010539 324 KRLEKLVGVP-VINIHIWFDRKLKN-TY-DH--LLFSRSSLLSVYADMSLTCKEYYNPNQSMLEL-VFAPAEEWISC--- 394 (508)
Q Consensus 324 ~~~~~~~~~~-~~~v~~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--- 394 (508)
+.++++.+.+ .+.+++.+++...+ .. .. ..+.... .+|...+..++..+|+|..++.+ ...+...|...
T Consensus 310 ~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~ 387 (492)
T TIGR02733 310 KRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQG--SLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEE 387 (492)
T ss_pred HHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCc--eEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHH
Confidence 6777777665 55889999873311 11 11 1222211 33433333456778888877643 34454444321
Q ss_pred ----ChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCC----------c-eeccCCC---CCCCCCCCCCCCCc
Q 010539 395 ----SDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPR----------S-VYKTIPN---CEPCRPLQRSPVEG 456 (508)
Q Consensus 395 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~---~~~~~~~~~~~~~~ 456 (508)
-++++.+.+++.|.+.+|+..+. + ......+|. | .|+.... ...+++..+++++|
T Consensus 388 ~y~~~k~~~~~~il~~le~~~p~l~~~------i-~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~g 460 (492)
T TIGR02733 388 DYTAKKKQYTQTIIERLGHYFDLLEEN------W-VHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKG 460 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccc------E-EEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCC
Confidence 24568899999999999874321 2 222233333 2 2222221 11233334789999
Q ss_pred eEEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 010539 457 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488 (508)
Q Consensus 457 l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~ 488 (508)
|||||++++++ +|+.||+.||+.+|++|+.
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 461 LWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred eEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 99999999986 7999999999999999985
No 24
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.97 E-value=6.8e-28 Score=244.25 Aligned_cols=413 Identities=19% Similarity=0.207 Sum_probs=233.4
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC--------------------hhHHHHHHHcCCC--Cccccccc
Q 010539 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY--------------------PNIQNLFGELGIN--DRLQWKEH 117 (508)
Q Consensus 60 VvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~--------------------~~~~~l~~~lg~~--~~~~~~~~ 117 (508)
|||||||++||+||.+|++.|++|+|||+++++||+. ..+.++++++|++ ..+.+...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~ 80 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVPL 80 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEEC
Confidence 6999999999999999999999999999999997752 1245667777743 23333332
Q ss_pred cceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchh-----hH-----------hc-Ccchhh
Q 010539 118 SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLP-----AI-----------IG-GQAYVE 180 (508)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~-~~~~~~ 180 (508)
+..+.+....+. .+.+..+.......+..+... ....+...++....... .+ .. ......
T Consensus 81 ~~~~~~~~~~g~--~~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (502)
T TIGR02734 81 DPFYRLCWEDGS--QLDVDNDQEELEAQIARFNPG-DVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLA 157 (502)
T ss_pred CCceEEECCCCC--EEEecCCHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhh
Confidence 222211111111 122211111000111111000 00000000000000000 00 00 000111
Q ss_pred cccCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHH
Q 010539 181 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 260 (508)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l 260 (508)
.....++.+|+++. +.....+.++.. ...+++.++.+.+..+.+.... . .. ....++.|| ...+++.|.+.+
T Consensus 158 ~~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~---~-~~-~g~~~~~gG-~~~l~~al~~~~ 229 (502)
T TIGR02734 158 LLAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALISAL---E-RE-WGVWFPRGG-TGALVAAMAKLA 229 (502)
T ss_pred ccCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHHHHH---H-hh-ceEEEcCCC-HHHHHHHHHHHH
Confidence 22356788888775 333333333331 2223445666666544332211 1 11 233456665 689999999999
Q ss_pred HHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH-HHhhhcCcchhccHHHHHHhhcCC-cCEEEEE
Q 010539 261 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVG-VPVINIH 338 (508)
Q Consensus 261 ~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~-~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~v~ 338 (508)
++.|++|+++++|++|.. +++.+++|.+.+|+++.||.||+|+++. +...|++....+....+.+.+..+ .+.++++
T Consensus 230 ~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~ 308 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLY 308 (502)
T ss_pred HHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEE
Confidence 999999999999999997 4566678999888889999999999985 445677654433223344455553 3677889
Q ss_pred EEec---cccccc-ccccccccCc---------------cceeec-ccccccccccCCCccEEEEE-ecCch-----hhc
Q 010539 339 IWFD---RKLKNT-YDHLLFSRSS---------------LLSVYA-DMSLTCKEYYNPNQSMLELV-FAPAE-----EWI 392 (508)
Q Consensus 339 ~~~~---~~~~~~-~~~~~~~~~~---------------~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~ 392 (508)
+.++ +++... ...+++..+. -..+|. ..+..++..+|+|..++.+. ..+.+ .|.
T Consensus 309 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~ 388 (502)
T TIGR02734 309 FGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWS 388 (502)
T ss_pred EeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcH
Confidence 9998 343211 1112221100 011222 23455678888888766543 33322 233
Q ss_pred CCChHHHHHHHHHHHHHh-CCCCcccccccceEEEeeEeecCCc-----------eeccCC---CCCCCCCC-CCCCCCc
Q 010539 393 SCSDSEIIDATMKELAKL-FPDEISADQSKAKIVKYHVVKTPRS-----------VYKTIP---NCEPCRPL-QRSPVEG 456 (508)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~-~~~~~~~ 456 (508)
. ..+++.+++++.|.+. +|+..+. + .+....+|.. .|+..+ +...+++. .+++++|
T Consensus 389 ~-~k~~~~~~il~~l~~~~~p~l~~~------i-~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~g 460 (502)
T TIGR02734 389 V-EGPRYRDRILAYLEERAIPGLRDR------I-VVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDN 460 (502)
T ss_pred H-HHHHHHHHHHHHHHHhcCCChhHh------e-EEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCC
Confidence 2 2567899999999998 8874321 2 2233333332 222211 12234443 3678999
Q ss_pred eEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 010539 457 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLLA 494 (508)
Q Consensus 457 l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~~~~ 494 (508)
|||||++++++ +|+.+|+.||+.||++|+.+++...
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 461 LYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred EEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999986 7999999999999999999876543
No 25
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.97 E-value=1.9e-27 Score=239.67 Aligned_cols=290 Identities=18% Similarity=0.275 Sum_probs=178.2
Q ss_pred ccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcC
Q 010539 185 LTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLG 264 (508)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g 264 (508)
.++.+++++.... .....++......+...++.+.+.......+. ...+ ..+.++.|| ...+++.|.+.++++|
T Consensus 170 ~s~~~~~~~~~~~-~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~-~g~~~~~gG-~~~l~~~L~~~~~~~G 243 (493)
T TIGR02730 170 QNAGDIARRYIRD-PGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHY-GGINYPKGG-VGQIAESLVKGLEKHG 243 (493)
T ss_pred ccHHHHHHHhcCC-HHHHHHHHHHHHhccCCCcccchhhhHHHhhc---cccc-ceEecCCCh-HHHHHHHHHHHHHHCC
Confidence 5677777765333 33333333222212112234544433322211 1112 234566666 5789999999999999
Q ss_pred CEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH-HHhhhcCcchhccHHHHHHhhcCCc-CEEEEEEEec
Q 010539 265 GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVGV-PVINIHIWFD 342 (508)
Q Consensus 265 ~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 342 (508)
++|+++++|++|.. +++.+.+|.+.+|+++.||.||+|++++ ++.+|++....+......++++... +..++++.++
T Consensus 244 ~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~ 322 (493)
T TIGR02730 244 GQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVK 322 (493)
T ss_pred CEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEec
Confidence 99999999999987 4567788999889889999999999875 5556887654433444444555544 5888999998
Q ss_pred ccccc---ccccccccc-----Cccceeecc-cccccccccCCCccEEEEEe-cCchhhcCC-------ChHHHHHHHHH
Q 010539 343 RKLKN---TYDHLLFSR-----SSLLSVYAD-MSLTCKEYYNPNQSMLELVF-APAEEWISC-------SDSEIIDATMK 405 (508)
Q Consensus 343 ~~~~~---~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~ 405 (508)
.+... ....+++.+ ..-..++.. .+..++..+|+|.+++.+.. .+...|... .++++.+.+++
T Consensus 323 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~ 402 (493)
T TIGR02730 323 ADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIID 402 (493)
T ss_pred CccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHH
Confidence 75421 111122110 000112222 24456778888888776543 223333211 24668999999
Q ss_pred HHHHhCCCCcccccccceEEEeeEeecCC----------ceeccCCCC---CCCC-CCCCCCCCceEEecccccCCCCCc
Q 010539 406 ELAKLFPDEISADQSKAKIVKYHVVKTPR----------SVYKTIPNC---EPCR-PLQRSPVEGFYLAGDYTKQKYLAS 471 (508)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~---~~~~-~~~~~~~~~l~~aG~~~~~~~~~~ 471 (508)
.|.+++|+..+. + .+....+|. |.|...+.. ...+ +..+++++||||||++++++ +|
T Consensus 403 ~l~~~~p~l~~~------I-~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG--~G 473 (493)
T TIGR02730 403 RLEKIFPGLDSA------I-DYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPG--QG 473 (493)
T ss_pred HHHHHCCChhhc------E-EEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCC--CC
Confidence 999999874321 2 222233333 333221111 1111 34578999999999999986 79
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010539 472 MEGAVLSGKLCAQAIVQDY 490 (508)
Q Consensus 472 ~~gA~~sg~~aA~~il~~l 490 (508)
+.+|+.||+.||++|+.++
T Consensus 474 v~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 474 LNAVAFSGFACAHRVAADL 492 (493)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999865
No 26
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=5.1e-27 Score=217.84 Aligned_cols=225 Identities=20% Similarity=0.266 Sum_probs=154.5
Q ss_pred EEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh---cCcchhccHHHHHHhhcCCcCEEEEEEEec
Q 010539 266 EVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ---LPENWKEMAYFKRLEKLVGVPVINIHIWFD 342 (508)
Q Consensus 266 ~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l---l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 342 (508)
+++++++|.+|...+++.+ .|++.||+.+.||+||+++...++++- +..+..|.....+|..+..+++.|+++.|.
T Consensus 245 ~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E 323 (498)
T KOG0685|consen 245 RIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFE 323 (498)
T ss_pred hhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEcc
Confidence 5666799999998655655 599999999999999999999999882 233445557789999999999999999999
Q ss_pred cccccc-ccccc--cccCc---ccee---ecccccccccccCCCccEEEEEecC--chhhcCCChHHHHHHHHHHHHHhC
Q 010539 343 RKLKNT-YDHLL--FSRSS---LLSV---YADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAKLF 411 (508)
Q Consensus 343 ~~~~~~-~~~~~--~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~ 411 (508)
+++|+. ...+. +.+.. +... +++-...+... .....++..++.+ ++...+++++++.+.+...|++++
T Consensus 324 ~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v-~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl 402 (498)
T KOG0685|consen 324 EPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPV-SWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFL 402 (498)
T ss_pred CCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEc-CcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhc
Confidence 999864 33222 22222 1000 00000000000 1112455555544 467779999999999999999999
Q ss_pred CCCcccccccceEEEeeEeecCC--ceeccCC-CCCC--------CCC-CCCCCCCceEEecccccCCCCCcHHHHHHHH
Q 010539 412 PDEISADQSKAKIVKYHVVKTPR--SVYKTIP-NCEP--------CRP-LQRSPVEGFYLAGDYTKQKYLASMEGAVLSG 479 (508)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~--------~~~-~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg 479 (508)
++...|.+ .++.+..|...|. |.|.|.. +... ..| ....+-+.|.|||++|+..|+.+++||++||
T Consensus 403 ~n~~iP~p--~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG 480 (498)
T KOG0685|consen 403 KNPEIPKP--KKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSG 480 (498)
T ss_pred CCCCCCCc--hhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhh
Confidence 86444433 3345555555554 7777744 2111 111 1223456799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 010539 480 KLCAQAIVQDYVLLA 494 (508)
Q Consensus 480 ~~aA~~il~~l~~~~ 494 (508)
+|.|++|+..+....
T Consensus 481 ~REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 481 WREADRLLEHYESST 495 (498)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999776544
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.95 E-value=2.9e-28 Score=244.97 Aligned_cols=230 Identities=31% Similarity=0.487 Sum_probs=153.2
Q ss_pred chHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh--hcCcchhccHHHHHHhhc
Q 010539 252 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKL 329 (508)
Q Consensus 252 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~--ll~~~~~~~~~~~~~~~~ 329 (508)
+...+...+...|++|+++++|++|+.++ +.+ .|++.+|+++.||+||+|+|...+.. +.+.... ....+++.+
T Consensus 211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~--~~~~a~~~~ 286 (450)
T PF01593_consen 211 LSLALALAAEELGGEIRLNTPVTRIERED-GGV-TVTTEDGETIEADAVISAVPPSVLKNILLLPPLPE--DKRRAIENL 286 (450)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEEEES-SEE-EEEETTSSEEEESEEEE-S-HHHHHTSEEESTSHH--HHHHHHHTE
T ss_pred hhHHHHHHHhhcCceeecCCcceeccccc-ccc-ccccccceEEecceeeecCchhhhhhhhhcccccc--ccccccccc
Confidence 34444455555678999999999999854 444 48888998999999999999999995 4444332 456777888
Q ss_pred CCcCEEEEEEEecccccccc---cccccccC-ccceeecccccccccccCCCccEEEEEecCc-hhhcCCChHHHHHHHH
Q 010539 330 VGVPVINIHIWFDRKLKNTY---DHLLFSRS-SLLSVYADMSLTCKEYYNPNQSMLELVFAPA-EEWISCSDSEIIDATM 404 (508)
Q Consensus 330 ~~~~~~~v~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 404 (508)
.+.++.+|++.|++++|... .++++.+. .....+.+.+. .+.. +++..++.++..+. ..+...+++++.+.++
T Consensus 287 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 364 (450)
T PF01593_consen 287 PYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSK-FPGR-PGGGVLTSYVGGPDAPEWDDLSDEEILERVL 364 (450)
T ss_dssp EEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECC-TTSC-TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred ccCcceeEEEeeecccccccccccceecccCcccccccccccc-Cccc-ccCCcceeeeeccccchhcccchhhhHHHHH
Confidence 99999999999999998652 33344443 12222222221 1112 23334443444433 6788899999999999
Q ss_pred HHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCC--CCCCCCCCC-CceEEecccccCCCCCcHHHHHHHHHH
Q 010539 405 KELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEP--CRPLQRSPV-EGFYLAGDYTKQKYLASMEGAVLSGKL 481 (508)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~l~~aG~~~~~~~~~~~~gA~~sg~~ 481 (508)
++|.++++....+.+....+..|....++.+.+.+...... ..+.++.|+ +||||||+++++.+.++++||+.||++
T Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~ 444 (450)
T PF01593_consen 365 DDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRR 444 (450)
T ss_dssp HHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHH
Confidence 99999999522222221222333333344454544433222 445567787 699999999999877899999999999
Q ss_pred HHHHHH
Q 010539 482 CAQAIV 487 (508)
Q Consensus 482 aA~~il 487 (508)
||++||
T Consensus 445 aA~~il 450 (450)
T PF01593_consen 445 AAEEIL 450 (450)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999986
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=204.36 Aligned_cols=402 Identities=19% Similarity=0.229 Sum_probs=256.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc--eEEEeccccCCCC-------------------------ChhHHHHHHHcCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLVGA-------------------------YPNIQNLFGELGI 108 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~--V~vlE~~~~~~g~-------------------------~~~~~~l~~~lg~ 108 (508)
..++|+|+|||++||++||+|++++.+ |+|+|+.++++|. .....+++.++|+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl 89 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGL 89 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCc
Confidence 458999999999999999999999765 5669999999664 1256789999999
Q ss_pred CCccccccccceeecCCCCCCcccccCCCC----CCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccC
Q 010539 109 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEV----LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDG 184 (508)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (508)
+..+....... .....++.+..+ .|..+.....+. +..+...+... +..... ....-....+
T Consensus 90 ~~e~~~i~~~~-------paaknr~l~~~~~L~~vP~sl~~s~~~~----l~p~~k~L~~a--~l~e~f-r~~~~~~~~d 155 (491)
T KOG1276|consen 90 EDELQPIDISH-------PAAKNRFLYVPGKLPTVPSSLVGSLKFS----LQPFGKPLLEA--FLRELF-RKKVSDPSAD 155 (491)
T ss_pred cceeeecCCCC-------hhhhheeeccCcccccCCcccccccccc----cCcccchhHHH--HHhhhc-cccCCCCCcc
Confidence 76543221110 000111111111 111111100000 00000000000 000000 0000122347
Q ss_pred ccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCe------------------------
Q 010539 185 LTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSK------------------------ 240 (508)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------------------------ 240 (508)
+++.+|++++ +..++.+..+++++.++++.|+.++|++..+..+... +..+|+.
T Consensus 156 ESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~-Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~ 233 (491)
T KOG1276|consen 156 ESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKV-EQKHGSIILGTIRAKFARKRTKKAETALSAQ 233 (491)
T ss_pred ccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHH-HHhccchhHHHHHHHHHhhcCCCccchhhhh
Confidence 8999999987 7788999999999999999999999999877655321 2222221
Q ss_pred -------EEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCC-cEEEEEEcCCc-EEEccEEEEccChHHHhh
Q 010539 241 -------MAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGN-VIDGDAYVFATPVDILKL 311 (508)
Q Consensus 241 -------~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g-~~~~V~~~~g~-~i~ad~VI~A~~~~~~~~ 311 (508)
+.-..| +.+.+.+.+.+.|.+..+.|.+.-++..+.....+ ....++..++. .+..+++..+.++..+.+
T Consensus 234 ~~~e~~~~~sl~g-Gle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ 312 (491)
T KOG1276|consen 234 AKKEKWTMFSLKG-GLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK 312 (491)
T ss_pred hcccccchhhhhh-hHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh
Confidence 111122 35677888888888778999999999999876555 33334444453 345566667999999999
Q ss_pred hcCcchhccHHHHHHhhcCCcCEEEEEEEecccc----cccccccccc----cCccceeecccccccccccCCCccEEEE
Q 010539 312 QLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKL----KNTYDHLLFS----RSSLLSVYADMSLTCKEYYNPNQSMLEL 383 (508)
Q Consensus 312 ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (508)
|++.... ....++.++.|.++..|++.|.++- .+.++.++.+ ....+++++| +..++.+.+....++..
T Consensus 313 ll~~~~~--sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifd-S~~Fp~~~~s~~vtvm~ 389 (491)
T KOG1276|consen 313 LLRGLQN--SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFD-SMLFPDRSPSPKVTVMM 389 (491)
T ss_pred hccccch--hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEee-cccCCCCCCCceEEEEe
Confidence 9987544 3457788999999999999999852 2445555552 2345677766 44556666555433333
Q ss_pred EecCchhh--cCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCC-----CCCCc
Q 010539 384 VFAPAEEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQR-----SPVEG 456 (508)
Q Consensus 384 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 456 (508)
..++..++ ...+.+++++.+.++|.++++....+. ...+..|+.+.+.|..|+.+....++ .+-.+
T Consensus 390 gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~-------~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~ 462 (491)
T KOG1276|consen 390 GGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPV-------SVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLG 462 (491)
T ss_pred cccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcc-------cccceehhhcccceecchHHHHHHHHHHHHhCCCCc
Confidence 22323333 356789999999999999998865542 22333688888888888655433221 22358
Q ss_pred eEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 010539 457 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487 (508)
Q Consensus 457 l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il 487 (508)
|+++|.+..+ -++..|+.||+++|.+++
T Consensus 463 l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 463 LFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred eEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 9999999987 699999999999998875
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.92 E-value=1e-22 Score=186.80 Aligned_cols=249 Identities=21% Similarity=0.264 Sum_probs=162.1
Q ss_pred ccCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEE-ccChHHHhhhcC
Q 010539 236 KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF-ATPVDILKLQLP 314 (508)
Q Consensus 236 ~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~-A~~~~~~~~ll~ 314 (508)
.....|.|+.|| +..+..++++.+++.|.+|.+++.|.+|.. ++|++++|.+++|++++++.||+ |++..++.+|+|
T Consensus 251 ~~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 251 GHKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP 328 (561)
T ss_pred ccCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC
Confidence 344567888887 899999999999999999999999999998 45899999999999999999887 667778889999
Q ss_pred cchhccHHHHHHhhcCCc-CEEE----EEEEecc----cccccccc------------ccc--------ccCccceeecc
Q 010539 315 ENWKEMAYFKRLEKLVGV-PVIN----IHIWFDR----KLKNTYDH------------LLF--------SRSSLLSVYAD 365 (508)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~-~~~~----v~~~~~~----~~~~~~~~------------~~~--------~~~~~~~~~~~ 365 (508)
.+..+.++ .++++.+. ++.+ .++.... +.+..... ..+ ++.+.... ..
T Consensus 329 ~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~-si 405 (561)
T KOG4254|consen 329 GEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIEL-SI 405 (561)
T ss_pred CccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEE-ec
Confidence 98887664 55555443 2222 2222111 11100000 000 11122211 23
Q ss_pred cccccccccCCCccEEEEEecC-chhhcCCC-------hHHHHHHHHHHHHHhCCCCccc---ccccceEEEeeEeecCC
Q 010539 366 MSLTCKEYYNPNQSMLELVFAP-AEEWISCS-------DSEIIDATMKELAKLFPDEISA---DQSKAKIVKYHVVKTPR 434 (508)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 434 (508)
.+..++..+|++++++.++... .++|.... ++++.+++++.+.+++|..... ..+.......+....+.
T Consensus 406 PS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~ 485 (561)
T KOG4254|consen 406 PSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPG 485 (561)
T ss_pred ccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCC
Confidence 4556778899999988876433 24555332 4789999999999999985442 00111111112222233
Q ss_pred ceecc-CCC---CCCCCCCC-----CCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 010539 435 SVYKT-IPN---CEPCRPLQ-----RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYVLL 493 (508)
Q Consensus 435 ~~~~~-~~~---~~~~~~~~-----~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~~~ 493 (508)
|.+.. ..+ ..-.+|.. ++|+++||+||+.++++ +++.+|. |..+|...+.+.+..
T Consensus 486 Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~~~~~ 549 (561)
T KOG4254|consen 486 GNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILDRKLY 549 (561)
T ss_pred CcccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhhhhhH
Confidence 32211 111 11123333 88999999999999997 7888874 999999998887664
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=7.3e-23 Score=204.41 Aligned_cols=402 Identities=21% Similarity=0.254 Sum_probs=204.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC-------------------hhHHHHHHHcC-CCCc-ccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY-------------------PNIQNLFGELG-INDR-LQW 114 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~-------------------~~~~~l~~~lg-~~~~-~~~ 114 (508)
+.+||||||||+.||+||.+|+++|++|+||||++.+||+. .....++.+++ ++.. +.+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l~~ 81 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPGPLFRELGNLDADGLDL 81 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchHHHHHHhccCcccceee
Confidence 56899999999999999999999999999999999998752 12235666666 4332 333
Q ss_pred ccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhc---CCCCChHHHHHHhhcchhhHhc-----Cc----------
Q 010539 115 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRN---NEMLTWPEKVKFAIGLLPAIIG-----GQ---------- 176 (508)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~---------- 176 (508)
...+..+......+.. .... .........+.. .....+...+............ ..
T Consensus 82 ~~~~~~~~~~~~~g~~--~~~~----~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (487)
T COG1233 82 LPPDPAYRVFLPDGDA--IDVY----TDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTP 155 (487)
T ss_pred eccCCceeeecCCCCE--EEec----CCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccH
Confidence 2222222222111111 0000 011111111100 0001111111111100000000 00
Q ss_pred -c--hhhcccCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccch
Q 010539 177 -A--YVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC 253 (508)
Q Consensus 177 -~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~ 253 (508)
. ........+..+++... +.....+..+........ ..+...+. ...+... ......+.++.|| ...++
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a---~~~~~~~--~~~~~G~~~p~GG-~~al~ 227 (487)
T COG1233 156 ERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA---LYLLLSH--LGLSGGVFYPRGG-MGALV 227 (487)
T ss_pred HHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH---HHHHHHH--hcccCCeeeeeCC-HHHHH
Confidence 0 00011233445555554 443333333332221112 33444331 1111111 1233456677776 89999
Q ss_pred HHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhc---cHHHHHHhhcC
Q 010539 254 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKE---MAYFKRLEKLV 330 (508)
Q Consensus 254 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~---~~~~~~~~~~~ 330 (508)
++|.+.+++.|++|+++++|++|.. ++|+.+++++.+|+.+.+|.||++........+.++.... ..+.+..
T Consensus 228 ~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~~~~~~~~~~~~---- 302 (487)
T COG1233 228 DALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADPALLARLLGEARRPRYRGSYLKSL---- 302 (487)
T ss_pred HHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCchhhhhhhhhhhhhhccccchhhhh----
Confidence 9999999999999999999999998 5655566888888779999999999886666666543321 0111111
Q ss_pred CcCEEEEEEEeccc--------------cccccccc---ccccCccceeecccccccccccCCCccE--EEEEecCchhh
Q 010539 331 GVPVINIHIWFDRK--------------LKNTYDHL---LFSRSSLLSVYADMSLTCKEYYNPNQSM--LELVFAPAEEW 391 (508)
Q Consensus 331 ~~~~~~v~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 391 (508)
.....++.++.. .+..+... .....++.. ....+..+++++|+|... ..+...+...+
T Consensus 303 --~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~ 379 (487)
T COG1233 303 --SALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLY-VSIPSLTDPSLAPEGKHSTFAQLVPVPSLGD 379 (487)
T ss_pred --HHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceE-EeCCCCCCCccCCCCCcceeeeeeecCcCCC
Confidence 111122222221 11100000 000001111 224556788999999751 11222221122
Q ss_pred cCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceecc--------------CCCCCCCCCCC-CCCCCc
Q 010539 392 ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKT--------------IPNCEPCRPLQ-RSPVEG 456 (508)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~~~~~ 456 (508)
.....+++.+. ++.+.++.|...+. + ......+|...-.+ ..+....+|.. .++++|
T Consensus 380 ~~~~~~~~~~~-~~~~~~~~p~~~~~------i-v~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~ 451 (487)
T COG1233 380 YDELKESLADA-IDALEELAPGLRDR------I-VAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKG 451 (487)
T ss_pred hHHHHHHHHHH-HHHHhhcCCCcccc------e-eEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCc
Confidence 22234555555 66788888874331 2 22233333321110 11122233433 588999
Q ss_pred eEEecccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 010539 457 FYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 489 (508)
Q Consensus 457 l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~ 489 (508)
||+||++++++ +++.++..++...+..+..+
T Consensus 452 LYl~Ga~t~PG--~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 452 LYLVGASTHPG--GGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred eEEeCCcCCCC--CCcchhhhhHHHHHhhhccc
Confidence 99999999998 89999877776666655443
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.89 E-value=9.6e-22 Score=174.67 Aligned_cols=262 Identities=20% Similarity=0.262 Sum_probs=168.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC--------------------------CChhHHHHHHHcCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG--------------------------AYPNIQNLFGELGIN 109 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g--------------------------~~~~~~~l~~~lg~~ 109 (508)
...+|+|||+|++||+||+.|+++ ++|+|+|+.++++| .|+++..|++++|++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 567999999999999999999987 89999999999844 388999999999987
Q ss_pred CccccccccceeecCCCCCCcccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHh--cCcchhhcccCccH
Q 010539 110 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII--GGQAYVEAQDGLTV 187 (508)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 187 (508)
..-.. +.+.+..+.+ .++|.... .+..++.+.+..--+....++.....+.. ..........+.++
T Consensus 86 t~as~----Msf~v~~d~g---glEy~g~t-----gl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl 153 (447)
T COG2907 86 TKASF----MSFSVSLDMG---GLEYSGLT-----GLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTL 153 (447)
T ss_pred Ccccc----eeEEEEecCC---ceeeccCC-----CccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccH
Confidence 64322 2222222222 12222200 01111111111111122222222222222 11112223456799
Q ss_pred HHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCC-------eEEeecCCccccchHHHHHHH
Q 010539 188 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS-------KMAFLDGNPPERLCLPIVEHI 260 (508)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~~~~~~g~~~~~l~~~l~~~l 260 (508)
.+||++++++..+.+.++.++..++|..+..+++..-....+ .++ ...|. .|..+.|| ....++.|..
T Consensus 154 ~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~-~nhGll~l~~rp~wrtV~gg-S~~yvq~laa-- 228 (447)
T COG2907 154 AQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFT-DNHGLLYLPKRPTWRTVAGG-SRAYVQRLAA-- 228 (447)
T ss_pred HHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHH-hccCceecCCCCceeEcccc-hHHHHHHHhc--
Confidence 999999999999999999999999998888777654333222 222 23332 23334444 3333333332
Q ss_pred HHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhhcCCcCEEEEEEE
Q 010539 261 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIW 340 (508)
Q Consensus 261 ~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~ 340 (508)
..+.+|.++++|.+|.+-.+|++ ++..+|++-++|.||+|+.+.....||+++.. ...+.+..+.|.....|...
T Consensus 229 -~~~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~sp--~e~qll~a~~Ys~n~aVlht 303 (447)
T COG2907 229 -DIRGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEPSP--EERQLLGALRYSANTAVLHT 303 (447)
T ss_pred -cccceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCCCH--HHHHHHHhhhhhhceeEEee
Confidence 22457999999999998888865 66677988999999999999999999987654 44567788888766555543
No 32
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=172.98 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=143.5
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-cEEEccEEEEccChHHHhhhcCc--chhccHHHHHHhhcCC
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPE--NWKEMAYFKRLEKLVG 331 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~i~ad~VI~A~~~~~~~~ll~~--~~~~~~~~~~~~~~~~ 331 (508)
.|.+.|. ...+|+++++|++|...+ ..+.+++++| +...+|.||+|.|+..+..||.. ...+...+..+....|
T Consensus 109 alak~LA-tdL~V~~~~rVt~v~~~~--~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y 185 (331)
T COG3380 109 ALAKFLA-TDLTVVLETRVTEVARTD--NDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVY 185 (331)
T ss_pred HHHHHHh-ccchhhhhhhhhhheecC--CeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhcccee
Confidence 3444443 457999999999999853 3467999665 55889999999999988888743 3334456778888888
Q ss_pred cCEEEEEEEecccccccccccccccCccceeecccccccccccCCCccEEEEEecC--chhhcCCChHHHHHHHHHHHHH
Q 010539 332 VPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAP--AEEWISCSDSEIIDATMKELAK 409 (508)
Q Consensus 332 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 409 (508)
.++..+.+.|.++....+.++...+.++-++-.+ ..-+...|.+. ++.+..++ .+++...+.++.++.+.....+
T Consensus 186 ~Pc~s~~lg~~q~l~~P~~G~~vdg~~laWla~d--~sK~g~~p~~~-~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~ 262 (331)
T COG3380 186 APCWSAVLGYPQPLDRPWPGNFVDGHPLAWLARD--ASKKGHVPDGE-IWVVQASPDWSREHLDHPAEQVIVALRAAAQE 262 (331)
T ss_pred hhHHHHHhcCCccCCCCCCCcccCCCeeeeeecc--ccCCCCCCcCc-eEEEEeCchHHHHhhcCCHHHHHHHHHHhhhh
Confidence 8988888999887766666655555555443222 22344445555 33344444 3555667778877777777777
Q ss_pred hCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 010539 410 LFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQD 489 (508)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~ 489 (508)
+.+.... . +......+|+.+.+....+... -...+-.+||+|||++++ +-+|||..||.-+|++|++.
T Consensus 263 ~~~~~~~-~-----p~~s~~H~WrYA~P~~~~~~~~---L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 263 LDGDRLP-E-----PDWSDAHRWRYAIPNDAVAGPP---LDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred ccCCCCC-c-----chHHHhhccccccccccccCCc---cccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhc
Confidence 7774211 1 1222334455544433222111 111233479999999998 79999999999999999875
Q ss_pred H
Q 010539 490 Y 490 (508)
Q Consensus 490 l 490 (508)
|
T Consensus 331 L 331 (331)
T COG3380 331 L 331 (331)
T ss_pred C
Confidence 3
No 33
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.82 E-value=2e-17 Score=162.48 Aligned_cols=235 Identities=19% Similarity=0.236 Sum_probs=141.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHc----CCceEEEeccccCCCCC----------------------hhHHHHHHHcCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLVGAY----------------------PNIQNLFGELGI 108 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~----g~~V~vlE~~~~~~g~~----------------------~~~~~l~~~lg~ 108 (508)
.+..+|+|||||++||+||++|++. |.+|+|||+++.+||.. ..+.++++++..
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~~~y~~l~~ll~~ips 99 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREMENHFECLWDLFRSIPS 99 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCccchHHHHHHHHHhccc
Confidence 4568999999999999999999996 68999999999986642 244555555432
Q ss_pred CCccccccccceeecCCCCCCc--ccccCCCCCCCchhHHHHHHhcCCCCChH--HHHHHhhcchhhHhcCcchhhcccC
Q 010539 109 NDRLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEMLTWP--EKVKFAIGLLPAIIGGQAYVEAQDG 184 (508)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (508)
.........+.++.+....... .++.+..+.. + ....+.+. ....++.-... ..+.++.
T Consensus 100 le~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~---------~-d~~~~~L~~k~r~~Ll~l~l~-------~e~~Ld~ 162 (576)
T PRK13977 100 LEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEI---------L-DTDKFGLSKKDRKELLKLLLT-------PEEKLDD 162 (576)
T ss_pred cCCCCcccccceeeeecCCcccceeeEEcCCCCE---------E-ECcCCCCCHHHHHHHHHHhcc-------CHHHhCC
Confidence 1110111111111111111111 1111111000 0 01111122 22222111111 1345678
Q ss_pred ccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhc----cCCeEEeecCCccccchHHHHHHH
Q 010539 185 LTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK----HGSKMAFLDGNPPERLCLPIVEHI 260 (508)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~g~~~~~l~~~l~~~l 260 (508)
.++.+|+....+.. .+..+++..+ .-....|+.+....+.+++... ..+.+.+......+.++..|.+.|
T Consensus 163 ~tI~d~f~~~Ff~t-----~Fw~~w~t~F-aF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~L 236 (576)
T PRK13977 163 KTIEDWFSPEFFET-----NFWYYWRTMF-AFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYL 236 (576)
T ss_pred cCHHHHHhhcCchh-----HHHHHHHHHH-CCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHH
Confidence 89999999865432 3444444443 3337778878777777765433 334455666666789999999999
Q ss_pred HHcCCEEEeCceeeEEEEc-CC--CcEEEEEEcC-C-----cEEEccEEEEccChHHHhhh
Q 010539 261 QSLGGEVRLNSRVQKIELN-DD--GTVKNFLLTN-G-----NVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 261 ~~~g~~i~~~~~V~~I~~~-~~--g~~~~V~~~~-g-----~~i~ad~VI~A~~~~~~~~l 312 (508)
+++||+|+++++|++|..+ ++ +++++|.+.+ | .....|.||+|+|..+-..-
T Consensus 237 e~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~ 297 (576)
T PRK13977 237 EDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESST 297 (576)
T ss_pred HhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccc
Confidence 9999999999999999974 23 5688888752 3 13568899999987665543
No 34
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.77 E-value=1.2e-17 Score=167.07 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=49.8
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+|.+++..|.+.+++.|++|+.+++|++|+. +++ +.|.+.+| ++.||+||+|+|.+..
T Consensus 181 ~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~--~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 181 QPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP--AVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred CHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc--eEEEeCCc-EEECCEEEEccccccc
Confidence 5889999999999999999999999999984 332 35888888 6999999999998854
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=149.92 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=50.0
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
...+++.|...+++.||+|+++++|.+|+.++++ ..+.+.+|++++||.+|+|+|...
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~--f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG--FRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecCce--EEEEcCCCCEEEccEEEEecCCcC
Confidence 5689999999999999999999999999985433 358899998899999999998433
No 36
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.73 E-value=5e-16 Score=153.60 Aligned_cols=202 Identities=12% Similarity=0.185 Sum_probs=109.6
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh--hhcCcchhccHHHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKR 325 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~--~ll~~~~~~~~~~~~ 325 (508)
+|..+...|.+.+.++|++++.+++|++|+..+++.++.|.+.+| ++.+++||+|++.+... ++++.. .+
T Consensus 181 ~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~-~~------ 252 (407)
T TIGR01373 181 RHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFR-LP------ 252 (407)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCC-CC------
Confidence 466788888999999999999999999998644566667888888 69999999999887532 222211 10
Q ss_pred HhhcCCcCEEEEEEEecccccccccccccccCccceeecccccccccccCCCccEEEEEecCchhhcCCChHHHHHHHHH
Q 010539 326 LEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMK 405 (508)
Q Consensus 326 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (508)
+ .+. ...+.+..+........+..... ..|+. + .+++..+++.............+.+..+.+++
T Consensus 253 ---~--~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~y~~-----p--~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~ 317 (407)
T TIGR01373 253 ---I--ESH-PLQALVSEPLKPIIDTVVMSNAV--HFYVS-----Q--SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLA 317 (407)
T ss_pred ---c--Ccc-cceEEEecCCCCCcCCeEEeCCC--ceEEE-----E--cCCceEEEecCCCCCCccCcCCCHHHHHHHHH
Confidence 0 011 11111222221111111111000 01110 0 11232222211100111122234667888999
Q ss_pred HHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHH
Q 010539 406 ELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQA 485 (508)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~ 485 (508)
.+.+++|..... .+...+.+.+.+.+......- ..|.+|+|++..+.. .|+.-|...|+..|+.
T Consensus 318 ~~~~~~P~l~~~----------~~~~~w~G~~~~t~D~~PiIg--~~~~~gl~~a~G~~g----~G~~~ap~~G~~la~l 381 (407)
T TIGR01373 318 AILEMFPILSRV----------RMLRSWGGIVDVTPDGSPIIG--KTPLPNLYLNCGWGT----GGFKATPASGTVFAHT 381 (407)
T ss_pred HHHHhCCCcCCC----------CeEEEeccccccCCCCCceeC--CCCCCCeEEEeccCC----cchhhchHHHHHHHHH
Confidence 999999974321 111222444444443222111 123589999987665 4677778889999988
Q ss_pred HHH
Q 010539 486 IVQ 488 (508)
Q Consensus 486 il~ 488 (508)
|+.
T Consensus 382 i~~ 384 (407)
T TIGR01373 382 LAR 384 (407)
T ss_pred HhC
Confidence 764
No 37
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.70 E-value=7.5e-16 Score=150.14 Aligned_cols=61 Identities=28% Similarity=0.407 Sum_probs=51.4
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 310 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~ 310 (508)
++.++++.|.+.+++.|++|+.+++|++|.. +++.+.+|.+.+|+ ++||+||+|+|+++..
T Consensus 145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EHHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred cccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence 4789999999999999999999999999998 45567679999996 9999999999998754
No 38
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.67 E-value=4.4e-15 Score=132.31 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEc-CCCcEEEEEEcCCcEEEccEEEEccChHHHhhhc
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 313 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll 313 (508)
+.+-++.+...+++.|+.|+-+..|+.++.. +++..+.|.|.+|..+.|+++|+|+|+|+...|-
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 6788889999999999999999999999853 4556677999999889999999999999866553
No 39
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.67 E-value=9.6e-15 Score=142.64 Aligned_cols=248 Identities=14% Similarity=0.174 Sum_probs=137.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChhH--HHHHHHcCCC------------------Ccccc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNI--QNLFGELGIN------------------DRLQW 114 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~~--~~l~~~lg~~------------------~~~~~ 114 (508)
++.+||||||+|++|+.+|..|++.|++|+++|+++..||....+ .++...++.. ..+.+
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 367999999999999999999999999999999999999876543 3333333210 00000
Q ss_pred ccccceeecCC-C---CCCcc----cccC-CCCCCCchhH-HHHHHhcCCCCChHHHHHHhhcchhhH---hcCc-chhh
Q 010539 115 KEHSMIFAMPN-K---PGEFS----RFDF-PEVLPAPLNG-ILAILRNNEMLTWPEKVKFAIGLLPAI---IGGQ-AYVE 180 (508)
Q Consensus 115 ~~~~~~~~~~~-~---~~~~~----~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ 180 (508)
.....+..+.. . --+|. .+.+ ..+.....+. ..+.+. .+.+.+.++.++.+ ++... .... ....
T Consensus 82 ~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~-s~ll~l~eKr~l~k-fl~~v~~~~~~~~~~~~ 159 (443)
T PTZ00363 82 ASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALS-SPLMGFFEKNRCKN-FLQYVSNYDENDPETHK 159 (443)
T ss_pred cCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhh-CCCcchhhHHHHHH-HHHHHHhhccCChhhhc
Confidence 00000000000 0 00000 0111 1111111111 122222 23444444443321 11111 1111 0111
Q ss_pred c--ccCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhh--hccC-CeEEeecCCccccchHH
Q 010539 181 A--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFLDGNPPERLCLP 255 (508)
Q Consensus 181 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~g~~~~~l~~~ 255 (508)
. .+..++.+|+++.+++....+.+...+ ......+..+.+....+..+..++. ..+| ..+.++.+| .+.|.+.
T Consensus 160 ~~~~d~~T~~d~L~~~~ls~~~~d~i~~~i-al~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG-~g~L~qa 237 (443)
T PTZ00363 160 GLNLKTMTMAQLYKKFGLEDNTIDFVGHAV-ALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYG-LGGLPQA 237 (443)
T ss_pred ccCcccCCHHHHHHHhCCCHHHHHHHHHHH-HhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCC-HHHHHHH
Confidence 1 346799999999988866554222222 1111111112223333333333322 2233 234566665 7899999
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccCh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 306 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~ 306 (508)
+.+.++..|++++++++|++|..++++++++|++.+|++++|+.||+....
T Consensus 238 l~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 238 FSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 999999999999999999999986567778899999989999999985443
No 40
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.65 E-value=7.4e-15 Score=145.91 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=50.9
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+|..++..|.+.++++|++|+++++|++|+.+ ++.++.|.+.++ ++.||+||+|+|.+..
T Consensus 199 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence 57889999999999999999999999999874 445556777766 6999999999999863
No 41
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.64 E-value=3.5e-14 Score=140.61 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=47.1
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-----cEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~i~ad~VI~A~~~~~~ 309 (508)
++.+++..|.+.+++.|++|+.+++|++|+.+ ++.+ .+.+.++ .+++||+||+|+|+++.
T Consensus 195 ~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 195 DIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcChH
Confidence 57788899999999999999999999999864 3333 2433322 36999999999999864
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.64 E-value=9.6e-15 Score=141.12 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=66.9
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh-------------h--
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL-------------Q-- 312 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~-------------l-- 312 (508)
....+++.|.+.+++.|++|+++++|.+|+.+ ++.+..|.+.+++++.||.||+|+|...... +
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh 185 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGH 185 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCC
Confidence 35678899999999999999999999999984 4455678886677899999999998543222 1
Q ss_pred -----cCcchhccHHHHHH--hhcCCcCEEEEEEEec-ccccccccccccccCcccee-eccccc
Q 010539 313 -----LPENWKEMAYFKRL--EKLVGVPVINIHIWFD-RKLKNTYDHLLFSRSSLLSV-YADMSL 368 (508)
Q Consensus 313 -----l~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 368 (508)
.|....-.-....+ ..+.....-.+...++ +......+.++|++..+.+. .++.|.
T Consensus 186 ~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~~~~~~~~~~~~GellfT~~GiSGp~il~lS~ 250 (409)
T PF03486_consen 186 TITPPYPALVPLKCDEPWLFFKELSGVRLKAVISLLDGKKKASETGELLFTHYGISGPAILQLSR 250 (409)
T ss_dssp -EEEEEEES--EE--HHHHHTGGGTT-EEEEEEEEE-ECTCEEEEEEEEE-SSEEESHHHHHHTT
T ss_pred cEecCCCccCCeeecchhhhhhhhCCCceeeEEEEeccCCccceeeeEEEECCccchHHHHHHHH
Confidence 11111000011222 5566665555544443 33345566677777666655 344444
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.63 E-value=1.3e-13 Score=135.45 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=49.0
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+|..+...|.+.+++.|++++.+++|++|+.+ ++.+ .|.+.++ ++.+|+||+|+|.+..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS 201 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH
Confidence 57889999999999999999999999999874 3333 4777776 6999999999998753
No 44
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.62 E-value=3e-13 Score=133.24 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=51.5
Q ss_pred ccccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh
Q 010539 248 PPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ 311 (508)
+|..++..|.+.+++.| ..+..+++|+.+... . ..+.|.+.+|+ +.||+||+|+|.+.-..
T Consensus 154 ~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l 215 (387)
T COG0665 154 DPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAGEL 215 (387)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHH
Confidence 57899999999999999 567779999999863 3 56679999996 99999999999987543
No 45
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.62 E-value=6e-14 Score=137.56 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=49.7
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+|.+++..+.+.+.+.|++|+++++|++|..+ ++. +.|.+.+| ++.+|+||+|+|.+..
T Consensus 147 ~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 147 RPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred cHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 47888888988888899999999999999974 333 35788878 6999999999999864
No 46
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.57 E-value=1.6e-12 Score=133.69 Aligned_cols=61 Identities=15% Similarity=0.095 Sum_probs=50.7
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcC-CCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
+|.+++..|++.++++|++|+.+++|++|..++ ++.+++|.+ .+|+ ++.+|.||+|+|+|.
T Consensus 230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 688999999999999999999999999998744 466666664 2343 589999999999986
No 47
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.57 E-value=2.7e-12 Score=127.01 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=49.3
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcCc
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLPE 315 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~~ 315 (508)
.+.+.|.+.+.+.|++|+.+++|++|+.++++ +.|++.+|+++.||.||.|.|.+. ++++++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 45567778888889999999999999875444 347778888899999999999854 4555543
No 48
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.57 E-value=5.7e-13 Score=131.17 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-Hhhhc
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 313 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll 313 (508)
..+.+.|.+.+++.|++++++++|++++.++++ + .|++.+|+++.+|.||.|.|.+. +++.+
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEEecCCCchHHHhh
Confidence 356677888888889999999999999874443 3 47777888899999999999864 33443
No 49
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.56 E-value=2.7e-13 Score=141.71 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=49.8
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+|..++..|.+.+++ |++|+.+++|++|...+ +.+ .|.+.+|..+.+|.||+|+|.+..
T Consensus 406 ~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 406 CPAELCRALLALAGQ-QLTIHFGHEVARLERED-DGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 578999999999988 99999999999998743 333 478888876789999999999864
No 50
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.56 E-value=2.4e-13 Score=121.22 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=111.8
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEc---------CCC-------cEEE--EEEcCC--cEEEccEEEEccChH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELN---------DDG-------TVKN--FLLTNG--NVIDGDAYVFATPVD 307 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~---------~~g-------~~~~--V~~~~g--~~i~ad~VI~A~~~~ 307 (508)
+|..|...+.++....|+.+ .+-+|+..+.. +++ .+.+ |...++ .+++++.+|+|+|+|
T Consensus 241 dpw~LLs~~rrk~~~lGv~f-~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~ 319 (509)
T KOG2853|consen 241 DPWALLSGIRRKAITLGVQF-VKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW 319 (509)
T ss_pred CHHHHHHHHHHHhhhhcceE-ecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence 57888888999888889988 55578877763 222 1112 222333 468999999999997
Q ss_pred HH--hhhcCcchhccHHHHHHhhcCCc-CEEEEEEEecccccccccccccccCccceeecccccccccccCCCccEEEEE
Q 010539 308 IL--KLQLPENWKEMAYFKRLEKLVGV-PVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELV 384 (508)
Q Consensus 308 ~~--~~ll~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (508)
.- ++|..-...+ ..+. -.++.. .-..+++++....+. .+. ++ ..|.+-.+..+..-|.+.++--
T Consensus 320 s~QvArlAgIG~g~-g~L~--vplPiepRKRyvyvi~~~~~PG-l~~------Pl---~iDpsG~f~Rrdglg~nfl~gr 386 (509)
T KOG2853|consen 320 SGQVARLAGIGKGP-GLLA--VPLPIEPRKRYVYVIFAPDVPG-LDT------PL---TIDPSGVFFRRDGLGGNFLCGR 386 (509)
T ss_pred HHHHHHHhccCCCC-ceee--ecccCCccceeEEEEeCCCCCC-CCC------ce---eECCCccEEEecCCCCceeccc
Confidence 53 3443211111 0000 000000 122344444332211 000 00 0111111111222222222100
Q ss_pred ecCc----hhh--cCCChHHHHHHHHHHHHHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCC-CCce
Q 010539 385 FAPA----EEW--ISCSDSEIIDATMKELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSP-VEGF 457 (508)
Q Consensus 385 ~~~~----~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l 457 (508)
+|. .+. ...+.+.+.+.+|..|....|.. ...++...+.+.|.++.--..-... ..| +-||
T Consensus 387 -sp~ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~f----------etakVqsaWaGyyD~NtfD~ngViG-~HP~y~Nl 454 (509)
T KOG2853|consen 387 -SPSEDEEPDHSNLDVDHDYFYQKIWPHLANRVPAF----------ETAKVQSAWAGYYDHNTFDDNGVIG-EHPLYTNL 454 (509)
T ss_pred -CCccccCCCccccccChHHHHhhhhHHHHhccccc----------ceeeeeehhcccccccccccCCccc-CCcceeee
Confidence 111 111 13456889999999999998873 4456666677777655422111111 333 6799
Q ss_pred EEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 010539 458 YLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488 (508)
Q Consensus 458 ~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~ 488 (508)
|+|-.... .|+..+...|+-.|+.|++
T Consensus 455 y~atGFsg----hGvqqs~avgRAiaElIld 481 (509)
T KOG2853|consen 455 YMATGFSG----HGVQQSPAVGRAIAELILD 481 (509)
T ss_pred eeeecccc----cchhcchHHHHHHHHHHhc
Confidence 99987665 4888889899988988875
No 51
>PRK07045 putative monooxygenase; Reviewed
Probab=99.55 E-value=1.7e-12 Score=127.68 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=48.4
Q ss_pred cchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-Hhh
Q 010539 251 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKL 311 (508)
Q Consensus 251 ~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ 311 (508)
.+.+.|.+.+.+ .|++++++++|+.|+.++++.++.|++.+|+++.+|.||-|.|... +++
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 455566766654 4799999999999998666666678888888999999999999864 445
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.55 E-value=2.2e-12 Score=126.51 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH-HHhhhcC
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~-~~~~ll~ 314 (508)
..+.+.|++.+++.|++++.++.|+.+..++++.++++ ..++.+++|+.||.|.|.. .+.+.+.
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~l~~~lg 159 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSALARKLG 159 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchHHHHHhC
Confidence 35566788899999999999999999998666655433 3333679999999999975 4444443
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.55 E-value=4.7e-13 Score=132.37 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.+-+.|.+.+++.|++|+.+++|++|..+ ++.++.+.+ +|.++.|+.||.|+|.+.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~-~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEA-DGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEc-CCcEEECCEEEEEeCCCH
Confidence 44456778888899999999999999873 455544544 566799999999999854
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.54 E-value=3.4e-12 Score=126.05 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.+-..|.+.+++.|++++.+++|+.|.. +++.+.+|.+. +.++.||.||.|.|...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~~-~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQAG-DDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEeC-CeEEECCEEEEccCcch
Confidence 4445577888888999999999999986 44555556554 45799999999999754
No 55
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.53 E-value=1.8e-12 Score=131.84 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=50.8
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CC--cEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~i~ad~VI~A~~~~~~ 309 (508)
+|.+++..+.+.+.++|++|+++++|++|.. +++.+++|.+. +| .++.|++||+|+|+|.-
T Consensus 147 dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 147 DPFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 6889999999999999999999999999987 45566667653 23 36999999999999863
No 56
>PRK06847 hypothetical protein; Provisional
Probab=99.51 E-value=2.7e-12 Score=125.72 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
..+.+.|.+.+.+.|++|+++++|++|+.++++ +.|.+.+|+++.+|.||.|+|.+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCCCc
Confidence 356667888888889999999999999874433 347778888899999999999864
No 57
>PLN02463 lycopene beta cyclase
Probab=99.51 E-value=9.3e-12 Score=122.44 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
...+.+.|.+.+.+.|++++ +++|++|+.++++ +.|++.+|++++||.||.|+|...
T Consensus 113 R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 113 RKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCc
Confidence 34566678888888899996 6799999974433 358888888899999999999864
No 58
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.51 E-value=3.5e-12 Score=124.43 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=48.4
Q ss_pred ccccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcC
Q 010539 248 PPERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 314 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~ 314 (508)
+|..++..|.+.+.+. |++|+.+++|++|+. + .|.+.+|+ +.||+||+|+|.+.. .|++
T Consensus 143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g~-i~a~~VV~A~G~~s~-~l~~ 202 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRGD-VHADQVFVCPGADFE-TLFP 202 (365)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCCc-EEeCEEEECCCCChh-hhCc
Confidence 6888999999988775 999999999999973 2 37788784 889999999999864 3443
No 59
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.51 E-value=5.1e-12 Score=124.48 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 251 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 251 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
.+.+.|.+.+.+. |++++.+++|+++..++++ +.|.+.+|++++||.||.|.|.+. +++.++
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4556677777766 8999999999999864443 347777888899999999999864 444543
No 60
>PLN02697 lycopene epsilon cyclase
Probab=99.51 E-value=2e-11 Score=121.88 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
..+.+.|.+.+.+.|+++ ++++|++|..++++ +..+.+.+|.++.|+.||.|+|.+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 456677888888889998 78899999874444 3335566777899999999999987
No 61
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.51 E-value=7.3e-12 Score=123.29 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=48.6
Q ss_pred ccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-Hhhhc
Q 010539 250 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 313 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll 313 (508)
..+.+.|.+.+.+.| ++|+.+++|++|+.+++ .+ .|.+.+|+++.+|.||.|.|.+. +++.+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~~~~vi~adG~~S~vr~~l 169 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDDGQQLRARLLVGADGANSKVRQLA 169 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECCCCEEEeeEEEEeCCCCCHHHHHc
Confidence 466777888888887 99999999999987443 33 47788888899999999999863 33444
No 62
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.50 E-value=6.7e-12 Score=123.31 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=49.9
Q ss_pred cccchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 249 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 249 ~~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
...+.+.|.+.+.+ .|++++.+++|++|..++++ +.|++.+|+++.||.||.|.|.+. +++.+.
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 34677788888887 49999999999999875444 247777887899999999999864 455544
No 63
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.50 E-value=3.2e-14 Score=135.75 Aligned_cols=87 Identities=25% Similarity=0.255 Sum_probs=64.9
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcE-EEccEEEEccChHHHhh--hcCcchhccHHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDILKL--QLPENWKEMAYFK 324 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~-i~ad~VI~A~~~~~~~~--ll~~~~~~~~~~~ 324 (508)
++..+...|++.++++|++|++|++|+.|+..++| ++.+.+.+|++ ++|+.||+|+|.+.... +......
T Consensus 151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~------ 223 (429)
T COG0579 151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED------ 223 (429)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc------
Confidence 57889999999999999999999999999986665 44577888866 99999999999976544 3332211
Q ss_pred HHhhcCCcCEEEEEEEecccc
Q 010539 325 RLEKLVGVPVINIHIWFDRKL 345 (508)
Q Consensus 325 ~~~~~~~~~~~~v~~~~~~~~ 345 (508)
....+....++.++...
T Consensus 224 ----~~~~P~~G~y~~~~~~~ 240 (429)
T COG0579 224 ----FKIFPVRGEYLVLDNEV 240 (429)
T ss_pred ----cccCccceEEEEEcccc
Confidence 12234445667777644
No 64
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.50 E-value=1e-11 Score=122.28 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH-HHhhhcC
Q 010539 249 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 314 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~-~~~~ll~ 314 (508)
...+.+.|.+.+++.| ++++ ++.|++|+.++++ +.|++.+|.++.||.||.|.|.+ .+++.+.
T Consensus 110 ~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 110 SSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 3466777888888887 8998 9999999864443 34788788789999999999985 3444443
No 65
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.49 E-value=4.1e-13 Score=132.00 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=49.2
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
++..+.+.|.+.+++.|++|+++++|++|..++ +.+ .|.+.+| ++.||.||+|+|.+.
T Consensus 147 d~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 147 DYRAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 478899999999999999999999999998743 333 5778777 699999999999875
No 66
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.4e-13 Score=113.18 Aligned_cols=138 Identities=22% Similarity=0.254 Sum_probs=94.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChhHHHHHHHcCCCCccccccccceeecCCCCCCcccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDF 135 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (508)
...||+|||||++||+|||+|+++|.+|+|+|++-..+|..+.-.-++..+=
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iV---------------------------- 80 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIV---------------------------- 80 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceee----------------------------
Confidence 3479999999999999999999999999999999888765442211111100
Q ss_pred CCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHHHHHHHcCCChhhHHHHHHHHHhhcccC
Q 010539 136 PEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFI 215 (508)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 215 (508)
-.+...++|++.+++..-.+
T Consensus 81 -----------------------------------------------v~~~a~~iL~e~gI~ye~~e------------- 100 (262)
T COG1635 81 -----------------------------------------------VREEADEILDEFGIRYEEEE------------- 100 (262)
T ss_pred -----------------------------------------------ecchHHHHHHHhCCcceecC-------------
Confidence 01245566666655432110
Q ss_pred CCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC---
Q 010539 216 NPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--- 292 (508)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g--- 292 (508)
..+ ++. ++..+...|+.++.+.|++|+..+.|..+...++.++.+|.+.=.
T Consensus 101 -----------------------~g~-~v~--ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~ 154 (262)
T COG1635 101 -----------------------DGY-YVA--DSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQ 154 (262)
T ss_pred -----------------------Cce-EEe--cHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhh
Confidence 000 111 244566677777788899999999999999855546777776321
Q ss_pred --------cEEEccEEEEccChH
Q 010539 293 --------NVIDGDAYVFATPVD 307 (508)
Q Consensus 293 --------~~i~ad~VI~A~~~~ 307 (508)
-+++|+.||-|||..
T Consensus 155 ~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 155 MAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred hcccccCcceeeEEEEEeCCCCc
Confidence 268999999999875
No 67
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.49 E-value=3.2e-11 Score=121.93 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=48.6
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC----cEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g----~~i~ad~VI~A~~~~~~ 309 (508)
++.+++..+...++++|++|+.+++|++|..+ ++ .+.|.+.++ .++.|+.||+|+|+|.-
T Consensus 153 d~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 153 DDARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred cHHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 57888889999999999999999999999874 33 345666554 35999999999999863
No 68
>PRK06185 hypothetical protein; Provisional
Probab=99.48 E-value=2.6e-11 Score=120.09 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=45.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC------CCCChhHHHHHHHcCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL------VGAYPNIQNLFGELGIND 110 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~------~g~~~~~~~l~~~lg~~~ 110 (508)
..++||+|||||++|+++|+.|++.|++|+|+|+++.. ....+...++++++|+..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~ 65 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLE 65 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChh
Confidence 36689999999999999999999999999999997543 122455677888888743
No 69
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.48 E-value=2.6e-11 Score=118.79 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=50.6
Q ss_pred ccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEEc-CCcEEEccEEEEccChH-HHhhhcC
Q 010539 250 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~~i~ad~VI~A~~~~-~~~~ll~ 314 (508)
..+.+.|.+.+.+.+ ++++.+++|+.++.++++ +. +++. +|++++||.||-|-|.+ .+++.++
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 466777888888776 899999999999985544 43 6766 89899999999999975 5566666
No 70
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.48 E-value=3.5e-11 Score=119.58 Aligned_cols=55 Identities=29% Similarity=0.447 Sum_probs=45.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC----C----CChhHHHHHHHcCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV----G----AYPNIQNLFGELGIND 110 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~----g----~~~~~~~l~~~lg~~~ 110 (508)
..+||+|||||++|+++|..|++.|++|+|+|+++... | ..++..+.++++|+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~ 79 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWE 79 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhh
Confidence 46899999999999999999999999999999987541 2 2456678888888744
No 71
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.48 E-value=1.8e-11 Score=120.92 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=45.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc-c----------CCCCChhHHHHHHHcCCCCc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD-V----------LVGAYPNIQNLFGELGINDR 111 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~-~----------~~g~~~~~~~l~~~lg~~~~ 111 (508)
..+||+|||||++||++|..|++.|++|+|+|+.. . ..+..++..++++++|+...
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~ 69 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQG 69 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhh
Confidence 35799999999999999999999999999999862 1 12235567789999998654
No 72
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.47 E-value=3.6e-13 Score=122.66 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=47.4
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC-----------CcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~-----------g~~i~ad~VI~A~~~~~ 308 (508)
+..+...|.+.+.+.|++|++++.|.++..++++.+++|.+.. ..+++|+.||.|+|.+.
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 4577788999999999999999999999875554676666531 24699999999999753
No 73
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.47 E-value=2.2e-11 Score=119.31 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC----C--------CCChhHHHHHHHcCCCCc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL----V--------GAYPNIQNLFGELGINDR 111 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~----~--------g~~~~~~~l~~~lg~~~~ 111 (508)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. . ...++..++++++|+...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~ 69 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSS 69 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchh
Confidence 479999999999999999999999999999987521 1 224667788999997543
No 74
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.47 E-value=7e-12 Score=123.36 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
..+.+.|.+.+.+.+...+++++|++++.++++ + .|++.+|+++.||.||.|.|.+. +++.++
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 456677888887765444889999999875444 3 47788888899999999999853 444443
No 75
>PRK07190 hypothetical protein; Provisional
Probab=99.47 E-value=3.2e-11 Score=120.88 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=46.9
Q ss_pred chHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 252 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 252 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
+-..|.+.+.+.|++|+++++|++|+.++++.. +.+.+|++++|++||.|.|... +++.++
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~--v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCL--TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE--EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 344566778888999999999999998655533 5566777899999999999854 455554
No 76
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.46 E-value=3.3e-11 Score=118.47 Aligned_cols=54 Identities=31% Similarity=0.364 Sum_probs=44.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC--------CCCChhHHHHHHHcCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--------VGAYPNIQNLFGELGIND 110 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~--------~g~~~~~~~l~~~lg~~~ 110 (508)
+.||+|||||++||++|..|++.|++|+|+|+++.. +...++..++++++|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~ 63 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGE 63 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChH
Confidence 479999999999999999999999999999998752 122466678888888754
No 77
>PRK08013 oxidoreductase; Provisional
Probab=99.46 E-value=9.2e-11 Score=115.60 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH-HHhhhcC
Q 010539 251 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 314 (508)
Q Consensus 251 ~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~-~~~~ll~ 314 (508)
.+...|.+.+.+. |++++++++|++|+.++++. .|++.+|++++||.||-|.|.+ .+++.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v--~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEA--FLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeE--EEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4556677777765 79999999999998755443 4777788899999999999985 4455554
No 78
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.46 E-value=3.5e-11 Score=119.14 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
..+.+.|.+.+.+.|++++.+++|++|+.++++ +.|++.+|+++.+|.||.|.|.+. +++.++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 467777888888889999999999999874433 347778888899999999999853 344443
No 79
>PRK06184 hypothetical protein; Provisional
Probab=99.46 E-value=1.2e-11 Score=125.55 Aligned_cols=55 Identities=36% Similarity=0.486 Sum_probs=45.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC------CCCChhHHHHHHHcCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL------VGAYPNIQNLFGELGIND 110 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~------~g~~~~~~~l~~~lg~~~ 110 (508)
+++||+|||||++||++|..|+++|++|+|||+++.. .+..++..++++++|+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~ 62 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLD 62 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHH
Confidence 4689999999999999999999999999999998654 233566678888888643
No 80
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.46 E-value=2e-11 Score=115.46 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc-CCcEEEccEEEEccChHH-Hhhhc
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVDI-LKLQL 313 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~~i~ad~VI~A~~~~~-~~~ll 313 (508)
..+.+.|.+.+++.|++++.+++|+++..++++.. +.+. ++.++++|.||.|+|.+. +.+.+
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~a~~vv~a~G~~s~~~~~~ 154 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVV--VIVRGGEGTVTAKIVIGADGSRSIVAKKL 154 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEE--EEEcCccEEEEeCEEEECCCcchHHHHhc
Confidence 45667788888889999999999999987544432 3333 345799999999999853 34444
No 81
>PRK09126 hypothetical protein; Provisional
Probab=99.46 E-value=1.1e-11 Score=122.25 Aligned_cols=56 Identities=36% Similarity=0.467 Sum_probs=45.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC-------CC----CChhHHHHHHHcCCCCc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL-------VG----AYPNIQNLFGELGINDR 111 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~-------~g----~~~~~~~l~~~lg~~~~ 111 (508)
.++||+|||||++|+++|..|+++|++|+|+|+.... .| ..++..++++++|+...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~ 68 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDR 68 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhh
Confidence 3589999999999999999999999999999998752 12 23556788889987543
No 82
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.46 E-value=4.1e-11 Score=114.52 Aligned_cols=236 Identities=20% Similarity=0.240 Sum_probs=124.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHc----CCceEEEeccccCCCC----------------------ChhHHHHHHHcCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLVGA----------------------YPNIQNLFGELGIND 110 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~----g~~V~vlE~~~~~~g~----------------------~~~~~~l~~~lg~~~ 110 (508)
..++-|||+|+|+|+||.+|-+. |.+|+|||+.+..||. +..+.+|+..+.-.+
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 46899999999999999999996 5699999999987554 233445555554322
Q ss_pred ccccccccceeecCCCCCCc--ccccCCCCCCCchhHHHHHHhcCCCCChHHHHHHhhcchhhHhcCcchhhcccCccHH
Q 010539 111 RLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 188 (508)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (508)
.......+.++.+....... .|+....+.... . ...-.++..+.+.+.+-... .-+.+...++.
T Consensus 82 ~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~------~-~~~~~Ls~k~r~eL~kL~l~-------~E~~L~~~~I~ 147 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVD------T-DSKFGLSEKDRMELIKLLLT-------PEEDLGDKRIE 147 (500)
T ss_pred CCCCcHHHHHHHhccCCCCCcceeeeccCCcccc------c-cCcCCCCHHHHHHHHHHhcC-------CHHHhCcccHH
Confidence 22222222222221111111 111100000000 0 00001112222222111110 01223466788
Q ss_pred HHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccC----CeEEeecCCccccchHHHHHHHHHcC
Q 010539 189 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQSLG 264 (508)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~g~~~~~l~~~l~~~l~~~g 264 (508)
+|+... +.+..|-.+++..++..+- -|+.+....+.+++....+ +.+.+..-...+.++..|.+.|+++|
T Consensus 148 d~F~~~-----FF~SnFW~~W~T~FAFqpW-hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~G 221 (500)
T PF06100_consen 148 DWFSES-----FFESNFWYMWSTMFAFQPW-HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQG 221 (500)
T ss_pred Hhcchh-----hhcCchhHhHHHhhccCcc-hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCC
Confidence 887664 3232333344444444432 3344444555555544333 22333344457899999999999999
Q ss_pred CEEEeCceeeEEEEcCC---CcEEEEEE-cCCc--EE---EccEEEEccChHHHhhh
Q 010539 265 GEVRLNSRVQKIELNDD---GTVKNFLL-TNGN--VI---DGDAYVFATPVDILKLQ 312 (508)
Q Consensus 265 ~~i~~~~~V~~I~~~~~---g~~~~V~~-~~g~--~i---~ad~VI~A~~~~~~~~l 312 (508)
|++++++.|+.|+.+.+ ..++.+++ .+|+ +| .-|.|+++.|.-+-..-
T Consensus 222 V~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~ 278 (500)
T PF06100_consen 222 VDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGST 278 (500)
T ss_pred CEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccc
Confidence 99999999999997532 23344444 3442 22 35788888886554443
No 83
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.45 E-value=2.5e-12 Score=125.41 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=57.2
Q ss_pred eEEeecC-CccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCc-----EEEccEEEEccChHHHhh
Q 010539 240 KMAFLDG-NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKL 311 (508)
Q Consensus 240 ~~~~~~g-~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-----~i~ad~VI~A~~~~~~~~ 311 (508)
.+.|+++ .++.+|+..++..+.++|.+|++.++|+++.+ +++ +++|.+.|.+ +++|+.||+|+|+|+-.-
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i 228 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEI 228 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHH
Confidence 4555554 36789999999999999999999999999998 555 8889876542 599999999999997543
No 84
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.45 E-value=1.4e-12 Score=118.28 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCC-cEEEEEEcC-----------CcEEEccEEEEccChH-HHhhhc
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTN-----------GNVIDGDAYVFATPVD-ILKLQL 313 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g-~~~~V~~~~-----------g~~i~ad~VI~A~~~~-~~~~ll 313 (508)
..+.+.|.+.+.+.|++|+.++.|.++..++++ ++.+|.+.. ..+++|+.||.|+|.. .+..++
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 466777888888899999999999999875443 577777642 2369999999999964 333443
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.45 E-value=2.3e-11 Score=122.78 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=48.2
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC---C--cEEEccEEEEccChHHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPVDIL 309 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~i~ad~VI~A~~~~~~ 309 (508)
++.+++..+.+.++++|++++.+++|++|..+ ++ .++|++.+ | .+++|+.||+|+|+|.-
T Consensus 153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 153 DDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 57888889999999999999999999999863 33 23565543 4 36999999999999863
No 86
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.45 E-value=5.4e-11 Score=121.68 Aligned_cols=57 Identities=32% Similarity=0.478 Sum_probs=47.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC------CCChhHHHHHHHcCCCCc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV------GAYPNIQNLFGELGINDR 111 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~------g~~~~~~~l~~~lg~~~~ 111 (508)
...+||+|||||++||++|..|++.|++|+|+|++.... +..++..++++++|+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADE 70 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhH
Confidence 467899999999999999999999999999999987542 234567788888887544
No 87
>PRK06834 hypothetical protein; Provisional
Probab=99.44 E-value=1.4e-11 Score=123.56 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
.+.+.|.+.+++.|++|+.+++|++|+.++++. .|++.+|+++++|+||.|.|.+. ++++++
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v--~v~~~~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGV--DVELSDGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCCCcHhhcC
Confidence 445567778888899999999999999754443 36677777899999999999864 444543
No 88
>PRK08244 hypothetical protein; Provisional
Probab=99.44 E-value=3.5e-11 Score=121.90 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=45.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC------CCCChhHHHHHHHcCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL------VGAYPNIQNLFGELGIND 110 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~------~g~~~~~~~l~~~lg~~~ 110 (508)
++||+|||||++||++|..|++.|++|+|+|+++.. .+..++..++++++|+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~ 61 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLE 61 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHH
Confidence 479999999999999999999999999999998654 223567788899998754
No 89
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.44 E-value=6.4e-11 Score=116.56 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=45.0
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
...+.+.|.+.+.+.|++++ .+.|+.+..++ +..+.|++.+|++++|+.||.|+|.+.
T Consensus 84 ~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 84 STRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 34666778888888899885 66899988642 334457888887899999999999986
No 90
>PRK07588 hypothetical protein; Provisional
Probab=99.43 E-value=1.5e-11 Score=121.14 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-Hhhh
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQ 312 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~l 312 (508)
.|...|.+.+. .|++|+++++|++|+.++++ + .|++.+|+++.+|.||.|.|.+. +++.
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCccchhh
Confidence 34444555443 47999999999999974443 3 47888898899999999999854 3443
No 91
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.43 E-value=1.1e-11 Score=118.30 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=67.4
Q ss_pred ccHHHHH---HHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhc--c--CCeEEeecCCccccchHHHH
Q 010539 185 LTVQEWM---RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK--H--GSKMAFLDGNPPERLCLPIV 257 (508)
Q Consensus 185 ~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--g~~~~~~~g~~~~~l~~~l~ 257 (508)
.++.+|. .+. ++..+.+.++.++....|+.++++++..+.. .+.-.+... + ..-..++.+ =.+.|.
T Consensus 129 ~~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~-----Gyt~~~ 201 (377)
T TIGR00031 129 EELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKG-----GYTKLF 201 (377)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCcccccccccccc-----cHHHHH
Confidence 3455554 554 6778889999999999999999999987653 221111100 0 001122222 245555
Q ss_pred HHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh
Q 010539 258 EHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 310 (508)
Q Consensus 258 ~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~ 310 (508)
+.+.+ .+++|++|+.+..++. .++. +.+..+ .+. +.||.|.+...+-
T Consensus 202 ~~ml~~~~i~v~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 202 EKMLDHPLIDVKLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred HHHHhcCCCEEEeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchHHH
Confidence 55543 4799999998887774 3332 433334 243 8899987766543
No 92
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.43 E-value=4.4e-12 Score=123.46 Aligned_cols=53 Identities=40% Similarity=0.510 Sum_probs=42.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC------CCChhHHHHHHHcCCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV------GAYPNIQNLFGELGIND 110 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~------g~~~~~~~l~~~lg~~~ 110 (508)
+||+|||||++||++|..|+++|++|+|||++.... +..++...+++++|+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~ 60 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLD 60 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHH
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchh
Confidence 699999999999999999999999999999987652 12456678888888654
No 93
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.43 E-value=7.2e-11 Score=116.86 Aligned_cols=39 Identities=31% Similarity=0.495 Sum_probs=35.5
Q ss_pred CCCCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 52 ~~~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.+..++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345677999999999999999999999999999999875
No 94
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.42 E-value=4.9e-13 Score=132.68 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=52.2
Q ss_pred ccccchHHHHHHHHH----cC--CEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh
Q 010539 248 PPERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~----~g--~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ 311 (508)
++..++..|.+.+++ .| ++|+++++|++|+.. ++..+.|.+.+| ++.||+||+|+|.|....
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~L 276 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSLLF 276 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHHHH
Confidence 678999999999998 77 789999999999974 344567888888 699999999999987543
No 95
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.42 E-value=7.3e-11 Score=115.19 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 250 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
..|.+.|.+.+.+.+ +++++++.|++|..++++. .|.+.++ +++||.||-|.|.+. +++.+.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~v~~~~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYS--IIKFDDK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE--EEEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence 356667888887765 8999999999998755442 4777666 899999999999864 444543
No 96
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.40 E-value=1.1e-10 Score=115.27 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=41.7
Q ss_pred chHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 252 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 252 l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.|.+.+.+ .|++++++++|++|..++++ + .|++.+|.++.+|.||.|.|.+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCh
Confidence 33456666655 47999999999999864443 2 47777887899999999999864
No 97
>PRK06126 hypothetical protein; Provisional
Probab=99.40 E-value=7.5e-11 Score=121.09 Aligned_cols=57 Identities=30% Similarity=0.407 Sum_probs=47.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC------CCCChhHHHHHHHcCCCCc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL------VGAYPNIQNLFGELGINDR 111 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~------~g~~~~~~~l~~~lg~~~~ 111 (508)
+..+||+|||||++||++|..|+++|++|+|+|+++.. .+..++..++++++|+...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~ 67 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADE 67 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHH
Confidence 46689999999999999999999999999999998654 2234667788888887543
No 98
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.40 E-value=1.9e-10 Score=117.98 Aligned_cols=59 Identities=32% Similarity=0.420 Sum_probs=48.8
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC------CCChhHHHHHHHcCCCCc
Q 010539 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV------GAYPNIQNLFGELGINDR 111 (508)
Q Consensus 53 ~~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~------g~~~~~~~l~~~lg~~~~ 111 (508)
..+.++||+|||||++||++|+.|++.|++|+|+|+++... +..++..++++++|+...
T Consensus 19 ~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~ 83 (547)
T PRK08132 19 DDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGER 83 (547)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHH
Confidence 34577899999999999999999999999999999987552 224567788999997653
No 99
>PRK11445 putative oxidoreductase; Provisional
Probab=99.40 E-value=9.9e-11 Score=113.10 Aligned_cols=52 Identities=29% Similarity=0.421 Sum_probs=42.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC---------CC-CChhHHHHHHHcCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL---------VG-AYPNIQNLFGELGIN 109 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~---------~g-~~~~~~~l~~~lg~~ 109 (508)
++||+|||||++|+++|+.|++. ++|+|+|+++.. ++ ..++..+.++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCC
Confidence 47999999999999999999999 999999988642 11 245666777777764
No 100
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.39 E-value=2e-10 Score=114.35 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHcC---CEEEeCceeeEEEEc-----CCCcEEEEEEcCCcEEEccEEEEccChHH-HhhhcC
Q 010539 251 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 314 (508)
Q Consensus 251 ~l~~~l~~~l~~~g---~~i~~~~~V~~I~~~-----~~g~~~~V~~~~g~~i~ad~VI~A~~~~~-~~~ll~ 314 (508)
.+...|.+.+.+.+ ++++++++|++|+.. +++..+.|++.+|++++||.||-|-|.+. +++.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 45566777777664 899999999999752 22333458888898999999999999864 455554
No 101
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.38 E-value=7.4e-11 Score=117.80 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=46.8
Q ss_pred cccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh
Q 010539 249 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 310 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~ 310 (508)
...+...+.+.+++. |+++ ..+.|++|.. +++.+.+|.+.+|..+.|+.||+|+|.+.-.
T Consensus 99 r~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 99 RKLYRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred HHHHHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 345566677777765 7888 5678999887 5667888999999899999999999986533
No 102
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.37 E-value=2.8e-12 Score=108.72 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=43.3
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc------CC-----cEEEccEEEEccChH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT------NG-----NVIDGDAYVFATPVD 307 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~------~g-----~~i~ad~VI~A~~~~ 307 (508)
+-.++..|..++.+.|++|+..+.|..+...+++++.+|.+. .| -+++++.||-|||..
T Consensus 95 ~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 95 SVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 445666777777779999999999999987565788888763 22 269999999999874
No 103
>PRK06996 hypothetical protein; Provisional
Probab=99.37 E-value=3.8e-10 Score=111.15 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC---cEEEccEEEEccCh--HHHhhhcC
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~i~ad~VI~A~~~--~~~~~ll~ 314 (508)
..+.+.|.+.+++.|++++.+++|++++.++++. .+++.+| ++++||.||-|.|. ...++.+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~ 182 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAVQAEGGLFHDQKADAG 182 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEEECCCCCchHHHHHcC
Confidence 3566778888888899999999999998655553 3666543 57999999999984 45455543
No 104
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.35 E-value=2.2e-12 Score=125.03 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCCCcchHHHHHHHHHHHhhhccCCeEEeecCC--ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC
Q 010539 215 INPDELSMQCILIALNRFLQEKHGSKMAFLDGN--PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG 292 (508)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~--~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g 292 (508)
++++++...+++..+..+....+ .+..| +|..++.+|+..+.+.|+.|..+++|++|.. +++...+|.|..|
T Consensus 155 LsPee~~~~~pLLn~d~v~g~Ly-----~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G 228 (856)
T KOG2844|consen 155 LSPEETQELFPLLNVDDVYGGLY-----SPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG 228 (856)
T ss_pred cCHHHHHHhCcccchhHheeeee-----cCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc
Confidence 56666666666555544332222 22222 6899999999999999999999999999997 4455568999999
Q ss_pred cEEEccEEEEccChHH
Q 010539 293 NVIDGDAYVFATPVDI 308 (508)
Q Consensus 293 ~~i~ad~VI~A~~~~~ 308 (508)
.|++.+||.|+|.|.
T Consensus 229 -~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 229 -SIETECVVNAAGVWA 243 (856)
T ss_pred -ceecceEEechhHHH
Confidence 599999999999997
No 105
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.35 E-value=4.4e-10 Score=110.29 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
+||+|||||++|++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 106
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.33 E-value=4.7e-10 Score=110.00 Aligned_cols=55 Identities=29% Similarity=0.390 Sum_probs=45.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC--------CCCChhHHHHHHHcCCCCc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--------VGAYPNIQNLFGELGINDR 111 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~--------~g~~~~~~~l~~~lg~~~~ 111 (508)
.+||+|||||++|+++|..|+++|++|+|+|+.+.. +...++..++++++|+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~ 64 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDER 64 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHH
Confidence 479999999999999999999999999999998742 1224566788888887543
No 107
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.33 E-value=6.3e-10 Score=109.17 Aligned_cols=34 Identities=44% Similarity=0.633 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
+||+|||||++|++||+.|+++|++|+|+|++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 5899999999999999999999999999998754
No 108
>PRK07121 hypothetical protein; Validated
Probab=99.33 E-value=8.2e-11 Score=118.96 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC-C--cEEEc-cEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDG-DAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~-g--~~i~a-d~VI~A~~~~~ 308 (508)
...++..|.+.+++.|++|+++++|++|..++++++++|...+ + .+++| +.||+|+|...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3468888999999999999999999999875567788887643 3 25888 99999998654
No 109
>PRK05868 hypothetical protein; Validated
Probab=99.32 E-value=6.4e-10 Score=108.23 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=43.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC------CCChhHHHHHHHcCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV------GAYPNIQNLFGELGIN 109 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~------g~~~~~~~l~~~lg~~ 109 (508)
+.||+|||||++|+++|..|+++|++|+|+|+++... +..++..++++++|+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~ 59 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLL 59 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCH
Confidence 3689999999999999999999999999999987652 1245567788888864
No 110
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.32 E-value=9.1e-11 Score=118.55 Aligned_cols=57 Identities=23% Similarity=0.194 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--CC--cEEEccEEEEccChH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 307 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~i~ad~VI~A~~~~ 307 (508)
..++..|.+.+++.|++|+++++|++|.. +++.+++|... ++ .++.++.||+|+|.+
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 35788889999999999999999999986 46767676653 33 368999999999854
No 111
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.30 E-value=1.7e-09 Score=111.76 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=47.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHc-CCceEEEeccccC------CCCChhHHHHHHHcCCCCc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL------VGAYPNIQNLFGELGINDR 111 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~-g~~V~vlE~~~~~------~g~~~~~~~l~~~lg~~~~ 111 (508)
++++||+|||||++||++|..|++. |++|+|||+++.. .|..++..++++.+|+...
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~ 93 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAER 93 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHH
Confidence 4578999999999999999999995 9999999998644 2336677888888887543
No 112
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.27 E-value=1.1e-10 Score=117.42 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=47.1
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--CC--cEEEccEEEEccChH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 307 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~i~ad~VI~A~~~~ 307 (508)
...++..|.+.+++.|++|+++++|++|.. +++++++|.+. +| ..+.++.||+|+|..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 356788899999999999999999999997 46777777763 23 358999999999853
No 113
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.27 E-value=2.9e-10 Score=117.40 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CCc--EEEccEEEEccChHH
Q 010539 254 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 254 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~i~ad~VI~A~~~~~ 308 (508)
+.|.+.+++.|++|++++.|++|.. +++++++|... +|+ .+.|+.||+|||...
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 5566677788999999999999987 46778888764 353 589999999998754
No 114
>PLN02985 squalene monooxygenase
Probab=99.27 E-value=1.9e-09 Score=108.58 Aligned_cols=58 Identities=28% Similarity=0.392 Sum_probs=46.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC----C--CChhHHHHHHHcCCCCc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV----G--AYPNIQNLFGELGINDR 111 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~----g--~~~~~~~l~~~lg~~~~ 111 (508)
.+..+||+|||||++|+++|+.|+++|++|+|+|+..... | ..++-...++++|+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~ 103 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDC 103 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcch
Confidence 3567899999999999999999999999999999975321 1 23455677888887553
No 115
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.26 E-value=7.5e-11 Score=117.82 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--CCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|+++++|++|..++++++++|... +++ .+.++.||+|+|.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 46888899999999999999999999998656777776653 343 478999999998654
No 116
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.26 E-value=5.8e-11 Score=117.27 Aligned_cols=55 Identities=35% Similarity=0.451 Sum_probs=45.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC------CCChhHHHHHHHcCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV------GAYPNIQNLFGELGIND 110 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~------g~~~~~~~l~~~lg~~~ 110 (508)
...||+|||||++||++|..|++.|++|+|+|+++... ...++..++++++|+..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~ 63 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGE 63 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChH
Confidence 34799999999999999999999999999999987652 12466778888888754
No 117
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.25 E-value=1.3e-09 Score=107.50 Aligned_cols=53 Identities=38% Similarity=0.485 Sum_probs=44.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC------CCCChhHHHHHHHcCCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL------VGAYPNIQNLFGELGIND 110 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~------~g~~~~~~~l~~~lg~~~ 110 (508)
.+|+|||||++||++|..|+++|++|+|+|+.+.. ....++..++++++|+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~ 61 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVAD 61 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChH
Confidence 68999999999999999999999999999998754 122467778888888754
No 118
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=4.5e-10 Score=115.15 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..|+..|.+.+++.|++|++++.|++|..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 4677888888888899999999999999755778888875 2453 578999999998754
No 119
>PLN02661 Putative thiazole synthesis
Probab=99.25 E-value=1.1e-10 Score=108.78 Aligned_cols=40 Identities=38% Similarity=0.357 Sum_probs=35.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHc-CCceEEEeccccCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLVG 94 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~-g~~V~vlE~~~~~~g 94 (508)
..++||+|||||++|++||+.|++. |++|+|+|+....+|
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 3568999999999999999999986 899999999877755
No 120
>PRK07538 hypothetical protein; Provisional
Probab=99.24 E-value=3.1e-09 Score=105.30 Aligned_cols=53 Identities=38% Similarity=0.580 Sum_probs=42.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC--C----CChhHHHHHHHcCCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV--G----AYPNIQNLFGELGIND 110 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~--g----~~~~~~~l~~~lg~~~ 110 (508)
+||+|||||++||++|..|+++|++|+|+|+++... | ..++..+.++++|+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~ 59 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLD 59 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHH
Confidence 489999999999999999999999999999987542 1 1345667777777643
No 121
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.24 E-value=2.8e-11 Score=107.63 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.+.+.|.+.+++.+++++++++|++|.+++++ +.|++.+++++.||+||+|+|...
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSC
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccC
Confidence 34445666667778899999999999997655 569998887899999999999643
No 122
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.24 E-value=8.2e-10 Score=110.23 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=46.9
Q ss_pred cccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 249 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+..+...+.+.+++. +++++. ..|+.+..++++.+.+|.+.+|..+.|+.||+|+|.+.-
T Consensus 95 r~~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 95 KVLYRKAMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred HHHHHHHHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 456666777888777 678854 578888764466788899999988999999999999853
No 123
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.23 E-value=4.5e-10 Score=114.27 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc-------CC-cEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~-------~g-~~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.|++|+.++.|++|..++++++++|.+. ++ ..+.|+.||+|+|...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 46778888888888999999999999987555677777653 22 3589999999998754
No 124
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.23 E-value=2.2e-10 Score=113.47 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=47.3
Q ss_pred ccccchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEE---EcCCc--EEEccEEEEccChHHHh
Q 010539 248 PPERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDILK 310 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~---~~~g~--~i~ad~VI~A~~~~~~~ 310 (508)
++..+.+.|.+.+.+ .|++|+++++|+.|...+++.+ .|+ +..|+ ++.||+||+|+|.+...
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 567889999999865 4899999999999987524432 243 34452 68999999999998743
No 125
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.23 E-value=4.4e-10 Score=115.72 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.|++|+.++.|+++..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 4678888888888999999999999988745677888764 3453 588999999997753
No 126
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.22 E-value=3.3e-11 Score=120.23 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=48.9
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCC--cEEEccEEEEccChHHHh
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDILK 310 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g--~~i~ad~VI~A~~~~~~~ 310 (508)
+|..++..|.+.+++.|++|+++++|++|+.++++.+ .|.+ ..| .+++||+||+|+|.+...
T Consensus 176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 6889999999999999999999999999987444432 2432 234 369999999999987643
No 127
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.22 E-value=4.5e-10 Score=115.63 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+.+.|++|+.++.+++|..++++++++|... +|+ .+.|+.||+|||...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 45778888888888999999999999887546778887652 453 589999999998753
No 128
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.22 E-value=2.6e-09 Score=103.97 Aligned_cols=56 Identities=29% Similarity=0.325 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
..+-+.+.+.+. .+..+++++.|++|+.+++ .+.|++.+|.+++|+.||-|.|...
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCccc
Confidence 355666777777 4556779999999997444 3347888998999999999999553
No 129
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=3.5e-10 Score=116.32 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|++++.|++|..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3578888888888999999999999998754577888764 3553 689999999998754
No 130
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.22 E-value=4e-10 Score=111.46 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=44.0
Q ss_pred ccchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEE-EcCCc--EEEccEEEEccChH
Q 010539 250 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPVD 307 (508)
Q Consensus 250 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~-~~~g~--~i~ad~VI~A~~~~ 307 (508)
..+++.|.+.+++ .|++|+++++|++|.. +++.+++|. ..+++ ++.|+.||+|+|..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4677888888875 4899999999999986 456666754 33443 58999999999874
No 131
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.22 E-value=6.2e-11 Score=118.35 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=49.3
Q ss_pred ccccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHHHhh
Q 010539 248 PPERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDILKL 311 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~~~~ 311 (508)
++..+...|.+.+++.| ++|+++++|++|+.++++.+ .|.+ ..|+ ++.|++||+|+|.+....
T Consensus 181 d~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L 249 (494)
T PRK05257 181 NFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGALPL 249 (494)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchHHH
Confidence 57889999999999887 79999999999997555533 3443 3353 699999999999987443
No 132
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=9.6e-10 Score=112.93 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+.+.|++|+.++.|+++..++++.+++|.. .+|+ .+.|+.||+|+|...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 4578888888888899999999999998755677878765 2453 578999999998754
No 133
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.20 E-value=1.4e-10 Score=115.36 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CCc--EEEccEEEEccChHHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDIL 309 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~i~ad~VI~A~~~~~~ 309 (508)
..++..|.+.+++.|++|+++++|++|.. +++++++|... +|+ .++|+.||+|+|....
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 46788899999999999999999999998 57788888876 443 5889999999987553
No 134
>PRK07236 hypothetical protein; Provisional
Probab=99.19 E-value=3.1e-10 Score=111.44 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=46.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC---CC----CChhHHHHHHHcCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL---VG----AYPNIQNLFGELGIND 110 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~---~g----~~~~~~~l~~~lg~~~ 110 (508)
++..||+|||||++||++|..|++.|++|+|+|+++.. .| ..++..++++++|+..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCc
Confidence 35689999999999999999999999999999998643 12 2567788899998754
No 135
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=1e-09 Score=112.21 Aligned_cols=58 Identities=16% Similarity=-0.007 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CC--cEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+.+.|++|++++.++++.. ++|++++|... +| ..+.|+.||+|||...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 45777888888888999999999999997 46888888764 33 2588999999998765
No 136
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.17 E-value=5.1e-10 Score=113.73 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHc-CCEEEeCceeeEEEEcC-CCcEEEEEEc-CCc--EEEccEEEEccChH
Q 010539 250 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPVD 307 (508)
Q Consensus 250 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~-~g~~~~V~~~-~g~--~i~ad~VI~A~~~~ 307 (508)
..++..|.+.+++. |++|++++.|++|..++ ++++++|... +|+ .+.|+.||+|||..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 46778888888654 89999999999998753 3777777653 453 37899999999874
No 137
>PLN02815 L-aspartate oxidase
Probab=99.16 E-value=1e-09 Score=112.05 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCC-c--EEEEEEc---CCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG-T--VKNFLLT---NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g-~--~~~V~~~---~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++. |++|+.++.+++|..++++ . +++|... +|+ .+.|+.||+|||...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 35777888888765 8999999999999875444 2 6777652 453 578999999998653
No 138
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.15 E-value=3.8e-10 Score=111.86 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=39.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
...++|+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 3568999999999999999999999999999999999988764
No 139
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.15 E-value=4.7e-10 Score=107.54 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=60.6
Q ss_pred hhhccCCeEEeecCCcc----ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC--cEEEccEEEEccCh
Q 010539 233 LQEKHGSKMAFLDGNPP----ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPV 306 (508)
Q Consensus 233 ~~~~~g~~~~~~~g~~~----~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~i~ad~VI~A~~~ 306 (508)
+....|..+..+....| .++.+.|.+.++++|++|+.+++|+++.. +++.++.|.+.++ .++.||+||+|+|.
T Consensus 242 L~~~~g~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 242 LEQATGLTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHHHHCCCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCC
Confidence 34445555554443322 57888899999999999999999999997 4556667777665 47999999999999
Q ss_pred HHHhhhcC
Q 010539 307 DILKLQLP 314 (508)
Q Consensus 307 ~~~~~ll~ 314 (508)
|....|+.
T Consensus 321 w~S~gL~a 328 (419)
T TIGR03378 321 FFSNGLVA 328 (419)
T ss_pred CcCHHHHh
Confidence 96666653
No 140
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.15 E-value=8.1e-10 Score=110.59 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
..+.+.|.+.+++.|++++.+ .|+.|.. +++.+++|.+ +|+.+.++.||+|||.+..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 468888999999899999875 8888876 4667777777 4667999999999998653
No 141
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.14 E-value=1.9e-09 Score=109.70 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=46.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc-CCc--EEEc-cEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~i~a-d~VI~A~~~~~ 308 (508)
..|+..|.+.+++.|++|+++++|++|.. +++++++|... +|+ .+.+ +.||+|+|-..
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 57888899999999999999999999986 56788888653 342 3666 47999997654
No 142
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.14 E-value=9.2e-10 Score=108.70 Aligned_cols=45 Identities=33% Similarity=0.450 Sum_probs=40.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCc-eEEEeccccCCCCChh
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLVGAYPN 98 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~-V~vlE~~~~~~g~~~~ 98 (508)
.++++||+|||||++||++|++|.++|.. ++||||++.++|.+..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 45789999999999999999999999998 9999999999887543
No 143
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.14 E-value=3.4e-10 Score=107.37 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 254 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 254 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
..+.+.+++.|+++++ +.|++|+..++ .+.|.+.+|+++.+|+||+|+|...
T Consensus 61 ~~l~~~~~~~gv~~~~-~~v~~v~~~~~--~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 61 EKMKEQAVKFGAEIIY-EEVIKVDLSDR--PFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHcCCeEEE-EEEEEEEecCC--eeEEEeCCCCEEEeCEEEECCCCCc
Confidence 3455566778999988 89999986433 2347777777899999999999853
No 144
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.13 E-value=6.6e-09 Score=105.91 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.+..+|+|||||++||++|..|+++|++|+|+|+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 466899999999999999999999999999999975
No 145
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.13 E-value=4.9e-10 Score=111.08 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=47.0
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
...+-+.|.+.+++.|++++.+ .|+++..+++|.++.|++.+|++++||.||=|+|...
T Consensus 153 R~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 3567777888899999999887 4888887778888899999999999999999999864
No 146
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.13 E-value=1.2e-09 Score=97.76 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=61.7
Q ss_pred hhhccCCeEEeecCCcc----ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCc--EEEccEEEEccCh
Q 010539 233 LQEKHGSKMAFLDGNPP----ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPV 306 (508)
Q Consensus 233 ~~~~~g~~~~~~~g~~~----~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~i~ad~VI~A~~~ 306 (508)
+....+..+..+....| -++-+.|.+.+++.|+.+..+.+|.+.+. .+++++.|.+.++. .++||..|+|+|.
T Consensus 237 L~~~~~~~l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGs 315 (421)
T COG3075 237 LNDVLGLALFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGS 315 (421)
T ss_pred HHHHhCCceeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccc
Confidence 33344444444333323 36677888899999999999999999998 67788889998763 4889999999999
Q ss_pred HHHhhhcCc
Q 010539 307 DILKLQLPE 315 (508)
Q Consensus 307 ~~~~~ll~~ 315 (508)
..-+.|+.+
T Consensus 316 ffskGLvae 324 (421)
T COG3075 316 FFSKGLVAE 324 (421)
T ss_pred cccccchhh
Confidence 887777654
No 147
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=2.5e-09 Score=109.87 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCC---CcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~---g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.|++|+.++.|++|..+++ +++++|.. .+|+ .+.|+.||+|||...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46778888888889999999999999987442 77778765 3453 588999999998754
No 148
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.12 E-value=5.4e-09 Score=107.16 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC-Cc--EEEcc-EEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~i~ad-~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|+++++|++|..+++|++++|...+ |+ .++|+ .||+|+|...
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 456777888888889999999999999986678888887643 32 47887 4999997654
No 149
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.12 E-value=2.4e-09 Score=110.22 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.|++|+.++.|++|.. +++++++|.. .+|+ .+.|+.||+|+|...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 35777888888888999999999999987 4677777664 3553 589999999999754
No 150
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.12 E-value=2.8e-09 Score=102.94 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=112.9
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHh
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 327 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~ 327 (508)
+|.+++..|.+.+.++|++|+.+++|++|.. .++.++.|.+.+| +++||+||+|+|+++-. |.+ .+
T Consensus 135 ~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~-l~~---~~-------- 200 (337)
T TIGR02352 135 DPRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAWAGE-LLP---LP-------- 200 (337)
T ss_pred ChHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChhhhh-ccc---CC--------
Confidence 5899999999999999999999999999997 4555667888888 79999999999998754 433 11
Q ss_pred hcCCcCEEEEEEEecccccccccccccccCccceeecccccccccccCCCccEEEEEecCchhhcCCChHHHHHHHHHHH
Q 010539 328 KLVGVPVINIHIWFDRKLKNTYDHLLFSRSSLLSVYADMSLTCKEYYNPNQSMLELVFAPAEEWISCSDSEIIDATMKEL 407 (508)
Q Consensus 328 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 407 (508)
+ .++....+.+..+....... +......+...+. ...+++..+++.... ...+....+.+..+.+++.+
T Consensus 201 -~--~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~y~-~p~~~g~~~iG~~~~-~~~~~~~~~~~~~~~l~~~~ 269 (337)
T TIGR02352 201 -L--RPVRGQPLRLEAPAVPLLNR------PLRAVVYGRRVYI-VPRRDGRLVVGATME-ESGFDTTPTLGGIKELLRDA 269 (337)
T ss_pred -c--cccCceEEEeeccccccCCc------ccceEEEcCCEEE-EEcCCCeEEEEEecc-ccCccCCCCHHHHHHHHHHH
Confidence 0 11111222232211000000 0000000000000 001123233322111 12233234566788999999
Q ss_pred HHhCCCCcccccccceEEEeeEeecCCceeccCCCCCCCCCCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHH
Q 010539 408 AKLFPDEISADQSKAKIVKYHVVKTPRSVYKTIPNCEPCRPLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIV 487 (508)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il 487 (508)
.++||.... ..+...+.+.+.+.+..... .......+|+|+++.+.+. |+--+...|+..|+.|+
T Consensus 270 ~~~~P~l~~----------~~~~~~~~g~r~~t~D~~pi-ig~~~~~~~~~~~~g~~g~----G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 270 YTILPALKE----------ARLLETWAGLRPGTPDNLPY-IGEHPEDRRLLIATGHYRN----GILLAPATAEVIADLIL 334 (337)
T ss_pred HHhCCCccc----------CcHHHheecCCCCCCCCCCE-eCccCCCCCEEEEcccccC----ceehhhHHHHHHHHHHh
Confidence 999986422 11222333444443332111 0111225789999876664 66667778999998886
Q ss_pred H
Q 010539 488 Q 488 (508)
Q Consensus 488 ~ 488 (508)
.
T Consensus 335 ~ 335 (337)
T TIGR02352 335 G 335 (337)
T ss_pred c
Confidence 4
No 151
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.12 E-value=1.8e-09 Score=110.15 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc-CCc--EEEcc-EEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~i~ad-~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|+++++|++|.. +++++++|... +|+ .+.|+ .||+|+|...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 46788888999999999999999999997 46788887763 343 47785 6999997644
No 152
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=2.8e-09 Score=110.12 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
.++||+|||||+|||+||..+++.|.+|+|||+....+|
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 468999999999999999999999999999999875543
No 153
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=2.2e-09 Score=110.29 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|++++.|++|.. +++.+.++.. .+|+ .+.|+.||+|+|...
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 46788888888888999999999999987 4677766653 3553 589999999998854
No 154
>PRK12839 hypothetical protein; Provisional
Probab=99.11 E-value=3.4e-09 Score=108.24 Aligned_cols=60 Identities=17% Similarity=0.257 Sum_probs=47.2
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--CCc-EE-EccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VI-DGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~i-~ad~VI~A~~~~~ 308 (508)
...++..|.+.+++.|++|+++++|++|..++++++++|... +|+ .+ .++.||+|+|.+.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 457888899999999999999999999987556788888653 343 24 4489999997754
No 155
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.10 E-value=1.8e-09 Score=108.91 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEEcC-C--cEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~~~-g--~~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++ .|++|+.++.|++|.. +++.+++|.+.+ + ..+.++.||+|+|.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4678888888887 5899999999999987 456676666543 3 3689999999999865
No 156
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.10 E-value=5e-09 Score=97.42 Aligned_cols=39 Identities=41% Similarity=0.555 Sum_probs=35.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+.+|||||||++||++|..|.+.|++|+|+|++..+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 468999999999999999999999999999998777443
No 157
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.10 E-value=5.5e-09 Score=107.39 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=47.9
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--CCc-EEEc-cEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~i~a-d~VI~A~~~~~ 308 (508)
+..++..|.+.+++.|++|+++++|++|.. +++++++|... ++. ++++ +.||+|+|.+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 457888999999999999999999999987 46777777653 332 4788 99999998865
No 158
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=3.6e-09 Score=108.84 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..+++.|.+.+.+ .|++|+.++.|++|.. +++.+++|.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 3577788887766 5899999999999987 4677767654 3553 589999999998864
No 159
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.09 E-value=1.1e-09 Score=107.26 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
...+.+.|.+.+++.|++|+++++|++|..+ ++ .+.|++ +++++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3567888899999999999999999999863 33 345666 455799999999999743
No 160
>PRK08275 putative oxidoreductase; Provisional
Probab=99.09 E-value=4.7e-09 Score=107.43 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
.+...|.+.+++.|++|+.++.|++|..++++++++|.. .+|+ .+.|+.||+|+|...
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 577888888888999999999999998744677777764 3453 488999999998854
No 161
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.08 E-value=1.7e-08 Score=97.64 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=125.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh--HHHHHHHcCCCC-----------cccccccccee
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN--IQNLFGELGIND-----------RLQWKEHSMIF 121 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~--~~~l~~~lg~~~-----------~~~~~~~~~~~ 121 (508)
++++||||+|.|+.-.-.|..|++.|++|+.+|+++.-||.+.. +.++.+.+.-.. +...+-...++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 46799999999999999999999999999999999999886543 334433332210 00000000000
Q ss_pred ecCCC------CCCccc----------ccCCCCCCCchh-HHHHHHhcCCCCChHHHHHHhhcchhhH---hcCc-chhh
Q 010539 122 AMPNK------PGEFSR----------FDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAI---IGGQ-AYVE 180 (508)
Q Consensus 122 ~~~~~------~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ 180 (508)
...+. .....+ +.+..+.-...+ .-.+.++. ..+.+.++.++.+ ++... .... ...+
T Consensus 82 ~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s-~~lsl~eKR~lmk-Fl~~v~~~~~~~~~~~~ 159 (438)
T PF00996_consen 82 YARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKS-KLLSLFEKRRLMK-FLKFVANYEEDDPSTHK 159 (438)
T ss_dssp ETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC--TTS-HHHHHHHHH-HHHHHHHGCTTBGGGST
T ss_pred hccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcC-CCccHHHHHHHHH-HHHHHhhcccCCcchhh
Confidence 00000 000000 011111101111 12223332 4556665544322 11111 1111 1111
Q ss_pred --cccCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCC--cchHHHHHHHHHHHhh---hccCCeEEeecCCccccch
Q 010539 181 --AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD--ELSMQCILIALNRFLQ---EKHGSKMAFLDGNPPERLC 253 (508)
Q Consensus 181 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~g~~~~~~~g~~~~~l~ 253 (508)
.....++.+++++.+++....+.+...+. . ..+.. +-+....+..+..++. ....+.+.++..| .+.|.
T Consensus 160 ~~~~~~~~~~e~~~~f~L~~~~~~~i~haia--L-~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG-~GELp 235 (438)
T PF00996_consen 160 GLDPEKKTFQELLKKFGLSENLIDFIGHAIA--L-SLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYG-LGELP 235 (438)
T ss_dssp TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS----SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT--TTHHH
T ss_pred ccccccccHHHHHHhcCCCHHHHHHHHHhhh--h-ccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccC-CccHH
Confidence 12367899999998877665543332221 1 11111 1123455555555543 2233456666665 67999
Q ss_pred HHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEE
Q 010539 254 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF 302 (508)
Q Consensus 254 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~ 302 (508)
+.+.+...-.|+...+|++|.+|..++++++.+|.. +|++++|++||.
T Consensus 236 Q~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~ 283 (438)
T PF00996_consen 236 QAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG 283 (438)
T ss_dssp HHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE
T ss_pred HHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE
Confidence 999999988999999999999999877888888876 788999999995
No 162
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.08 E-value=5e-09 Score=107.71 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHH----cCCEEEeCceeeEEEEcCCCcEEEEEEc---CC--cEEEccEEEEccChH
Q 010539 250 ERLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVD 307 (508)
Q Consensus 250 ~~l~~~l~~~l~~----~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~i~ad~VI~A~~~~ 307 (508)
..++..|.+.+++ .|++|+++++|++|..++++++++|... +| ..+.|+.||+|||..
T Consensus 129 ~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 129 QQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred hHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3455566555544 3799999999999987556678888764 34 358899999999874
No 163
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.07 E-value=2.5e-09 Score=110.75 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=45.4
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CCc--EEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~i~ad~VI~A~~~~~ 308 (508)
.+...|.+.+.+.|++|+.++.|++|.. +++++++|... +|+ .+.|+.||+|||.+.
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 5666788888889999999999999997 46777776653 563 468999999998754
No 164
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.07 E-value=1.7e-09 Score=105.30 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=56.0
Q ss_pred hccCCeEEeecCCc----cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC--cEEEccEEEEccChHH
Q 010539 235 EKHGSKMAFLDGNP----PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 308 (508)
Q Consensus 235 ~~~g~~~~~~~g~~----~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~i~ad~VI~A~~~~~ 308 (508)
...|..+..+.... ..++.+.|.+.+++.|++|+++++|++++.. ++.+..+.+.+| .++.+|.||+|+|...
T Consensus 240 ~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 240 EALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 45566666654432 1367788889999999999999999999874 455555555455 3589999999999764
Q ss_pred Hhhhc
Q 010539 309 LKLQL 313 (508)
Q Consensus 309 ~~~ll 313 (508)
-..|.
T Consensus 319 s~GL~ 323 (422)
T PRK05329 319 SGGLV 323 (422)
T ss_pred cCcee
Confidence 44443
No 165
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=2.3e-09 Score=109.46 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.|++|++++.|++|..++++++++|.. .+|+ .+.|+.||+|||...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4677888888888899999999999998754444777653 3453 589999999998754
No 166
>PTZ00367 squalene epoxidase; Provisional
Probab=99.07 E-value=3.9e-08 Score=99.69 Aligned_cols=55 Identities=35% Similarity=0.412 Sum_probs=45.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc--cC---C--CCChhHHHHHHHcCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VL---V--GAYPNIQNLFGELGIND 110 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~--~~---~--g~~~~~~~l~~~lg~~~ 110 (508)
..+||+|||||++|+++|+.|+++|++|+|+|+.. .. . ...++..+.++++|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEE 93 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChh
Confidence 56899999999999999999999999999999975 11 1 23466678888888754
No 167
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.07 E-value=1.5e-09 Score=109.25 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
..+.+.+.+.+++.|+++++++.|++|..++++ + .+++.+|+++.+|.||+|+|...-..+
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG-V-IVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe-E-EEEECCCCEEEeCEEEEeecCCccccC
Confidence 356678888899999999999999999864333 2 366677878999999999997654443
No 168
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=2.8e-09 Score=109.53 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHcC----CEEEeCceeeEEEEcCCCcEEEEEEc---CCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLG----GEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g----~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.+ ++|+.++.++++..+++|++++|... +|+ .+.|+.||+|||...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 456777777666543 78999999999987556788888764 333 478999999998754
No 169
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.06 E-value=3.7e-09 Score=105.27 Aligned_cols=57 Identities=26% Similarity=0.277 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcC-CCcEEEEEEcC-CcEEEccEEEEccCh
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTN-GNVIDGDAYVFATPV 306 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~~~~V~~~~-g~~i~ad~VI~A~~~ 306 (508)
..+++.|.+.+++.|++|+++++|++|..++ ++++++|.+.+ +.++.++.||+|+|.
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence 4688899999999999999999999998753 56777776543 357999999999984
No 170
>PRK06753 hypothetical protein; Provisional
Probab=99.05 E-value=1.6e-09 Score=106.07 Aligned_cols=52 Identities=29% Similarity=0.554 Sum_probs=41.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCC------CCChhHHHHHHHcCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLV------GAYPNIQNLFGELGIN 109 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~------g~~~~~~~l~~~lg~~ 109 (508)
.||+|||||++||++|..|++.|++|+|+|+++... +..++..+.++.+|+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~ 58 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLA 58 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChH
Confidence 489999999999999999999999999999987652 1235556666666653
No 171
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.04 E-value=4.7e-09 Score=106.07 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC--Cc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~--~i~ad~VI~A~~~~~ 308 (508)
..+++.|.+.++ .|++|+.++.|++|.. +++.+++|.+.+ |+ .+.|+.||+|+|...
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 456777777765 5899999999999986 467777776543 32 589999999998754
No 172
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.04 E-value=4.2e-09 Score=108.50 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=44.2
Q ss_pred ccchHHHHHHHHHcC-CEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+++.| ++|+.++.|++|.. +++.+++|.. .+|+ ++.|+.||+|+|.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 356667777777775 99999999999986 3566666642 3453 689999999999764
No 173
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.04 E-value=5.3e-09 Score=105.78 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=46.2
Q ss_pred cccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcC-Cc--EEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~i~ad~VI~A~~~~~ 308 (508)
...+++.|.+.+++. |++|+.++.|++|.. +++++++|.+.+ +. ++.|+.||+|+|...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLV-DDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheee-cCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 346788888888775 899999999999986 467777777643 32 589999999998753
No 174
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.03 E-value=7.5e-09 Score=106.44 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC--Cc-EEEcc-EEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~-~i~ad-~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|+++++|++|.. +++++++|.+.+ +. .+.++ .||+|+|...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 35778888888999999999999999997 467777777643 32 47786 6999998754
No 175
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.03 E-value=1e-08 Score=105.14 Aligned_cols=58 Identities=21% Similarity=0.134 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEE---cCC--cEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g--~~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+.+. +++++.++.|++|.. +++.+++|.. .+| ..+.|+.||+|+|...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 35667777777664 799999999999997 4677766653 456 3689999999998754
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.02 E-value=1.8e-09 Score=109.71 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.+.+.+.+.+++.|++++++++|++|...++ .+.|.+.+|.++.+|.||+|+|...
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~--~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAG--LIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCC--eEEEEECCCCEEEcCEEEECCCCCc
Confidence 4455577777888999999999999987433 2347777887899999999999853
No 177
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.02 E-value=1.5e-08 Score=104.08 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=47.5
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-c--EEEc-cEEEEccChHHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N--VIDG-DAYVFATPVDIL 309 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~--~i~a-d~VI~A~~~~~~ 309 (508)
...++..|.+.+++.|++|+++++|++|.. +++++++|.+.++ + .+.+ +.||+|+|....
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 346888999999999999999999999986 4677878776443 2 4776 689999987543
No 178
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.02 E-value=5.6e-10 Score=78.65 Aligned_cols=36 Identities=44% Similarity=0.648 Sum_probs=32.8
Q ss_pred EECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 62 IIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
|||||++||++|+.|+++|++|+|+|+++.++|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 899999999999999999999999999999987654
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.02 E-value=1.9e-09 Score=109.36 Aligned_cols=55 Identities=27% Similarity=0.320 Sum_probs=43.0
Q ss_pred chHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 252 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 252 l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.+.+.+++.|++++++++|++|..+++. ..|.+.+|+++.+|+||+|+|...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 3445666777789999999999999864332 347777887899999999999863
No 180
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.01 E-value=7.8e-09 Score=105.68 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc-CCc--EEEcc-EEEEccChH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVD 307 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~i~ad-~VI~A~~~~ 307 (508)
.+...|.+.+++.|++|+++++|++|.. +++++++|... +|+ .+.|+ .||+|+|..
T Consensus 209 ~~~~~L~~~~~~~gv~v~~~t~v~~l~~-~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 209 ALAAGLRIGLQRAGVPVLLNTPLTDLYV-EDGRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred HHHHHHHHHHHcCCCEEEeCCEEEEEEE-eCCEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 4667788888889999999999999997 46677777664 343 48886 599988754
No 181
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.01 E-value=3.1e-09 Score=105.42 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=44.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcC-CceEEEeccccCCC------CChhHHHHHHHcCCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVG------AYPNIQNLFGELGIND 110 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~~~~g------~~~~~~~l~~~lg~~~ 110 (508)
.+|+|||||++||++|..|+++| .+|+|+|+++.... ..++..+.++.+|+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~ 60 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGE 60 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChh
Confidence 37999999999999999999998 59999999876532 2567788888888754
No 182
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.00 E-value=2.3e-09 Score=102.04 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=68.1
Q ss_pred cCCeEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC---Cc--EEEccEEEEccChH--HH
Q 010539 237 HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVD--IL 309 (508)
Q Consensus 237 ~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~i~ad~VI~A~~~~--~~ 309 (508)
.|+.+.|-+..+..++.-.++-.+..+|+.+....+|.++..++++++.++.+.| |+ +|+|+.||+|||+. .+
T Consensus 211 ~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsI 290 (680)
T KOG0042|consen 211 KGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSI 290 (680)
T ss_pred eeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHH
Confidence 4555555444566788888887888899999888899999988888777777654 32 48999999999985 44
Q ss_pred hhhcCcchhccHHHHHHhhcCCcCEEEEEEEecccc
Q 010539 310 KLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKL 345 (508)
Q Consensus 310 ~~ll~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 345 (508)
+++-.+...+ + -.+...+++.+.+-+
T Consensus 291 r~Mdd~~~~~---------i-~~pSsGvHIVlP~yY 316 (680)
T KOG0042|consen 291 RKMDDEDAKP---------I-CVPSSGVHIVLPGYY 316 (680)
T ss_pred HhhcccccCc---------e-eccCCceeEEccccc
Confidence 5554432221 1 124556777776544
No 183
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.00 E-value=2.3e-07 Score=87.45 Aligned_cols=57 Identities=37% Similarity=0.568 Sum_probs=50.5
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 307 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~ 307 (508)
..+++.+.+.+++.|++|+++|+|..|+. +++.+.+|.+.+|+++.+|+||+|.|-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 46788899999999999999999999998 5666677999999899999999999753
No 184
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.00 E-value=1.3e-08 Score=104.29 Aligned_cols=58 Identities=21% Similarity=0.093 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEE---cCC--cEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNG--NVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g--~~i~ad~VI~A~~~~~ 308 (508)
..|...|.+.+.+. +++++.++.|++|.. +++.+++|.. .+| ..+.|+.||+|+|...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 46777888877664 799999999999997 4677777654 355 3589999999998754
No 185
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.00 E-value=6.8e-10 Score=109.84 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC---CcEEEccEEEEccChHHHhhhcC
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GNVIDGDAYVFATPVDILKLQLP 314 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~~i~ad~VI~A~~~~~~~~ll~ 314 (508)
+..+-..|.+.+.+.|++|++++.|+++.. +++++++|.+.+ ..+++|+.||-|+|-..+..+.+
T Consensus 89 ~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG 156 (428)
T PF12831_consen 89 PEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAG 156 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 334444556666778999999999999998 566788888754 35799999999999877776644
No 186
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.99 E-value=5.9e-09 Score=76.78 Aligned_cols=34 Identities=38% Similarity=0.646 Sum_probs=32.0
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+|+|||||+.|+.+|..|++.|.+|+|+|+++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999998865
No 187
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.98 E-value=7.5e-09 Score=98.15 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=44.5
Q ss_pred ccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
..+...+.+.+++. +++| .+.+|+.|.. +++++++|.+.+|+.+.+|.||+|||...
T Consensus 95 ~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 34555677777764 6787 5679999998 67889999999999999999999999943
No 188
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.98 E-value=3.3e-09 Score=106.66 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=34.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
++|+|||||++||++|..|.+.|++|+++|+++.+||.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 6899999999999999999999999999999999999765
No 189
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.97 E-value=1e-08 Score=100.58 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=51.5
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 310 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~ 310 (508)
+|.+++..|.+.+.+ |++|+.+++|++|+.+ ++. +.|++.+|.++.||+||+|+|.++..
T Consensus 133 dp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred ChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence 689999999999988 9999999999999874 333 46888888779999999999998743
No 190
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.97 E-value=1.5e-08 Score=111.78 Aligned_cols=41 Identities=41% Similarity=0.583 Sum_probs=37.5
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
...+||||||+|.+|++||..+++.|.+|+||||....+|+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 35689999999999999999999999999999999887664
No 191
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.97 E-value=6.2e-09 Score=103.98 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=35.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
++||+|||||++|++||..++++|++|+|+|+. .++|.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence 589999999999999999999999999999985 5666544
No 192
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.96 E-value=2.7e-08 Score=100.88 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=36.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+.++||||||+| +||+||+.+++.|.+|+|||+....+|.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 357899999999 9999999999999999999999876554
No 193
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.96 E-value=4.9e-09 Score=91.99 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=41.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC------CceEEEeccccCCCCChhHHHHHH
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAG------HKPLLLEARDVLVGAYPNIQNLFG 104 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g------~~V~vlE~~~~~~g~~~~~~~l~~ 104 (508)
..++|+|||||+.|.++||+|++.+ +.|+|+|.....+|+......++.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa 63 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLA 63 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhH
Confidence 4589999999999999999999986 799999999988877665555444
No 194
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.6e-09 Score=97.57 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcC
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 314 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~ 314 (508)
.+.+.+.+.++..|+++.. ..|.+++..++ ...|.+.+|+ ++|+.||+|+|......-++
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~ 121 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKLGVP 121 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCCCCC
Confidence 4455566677777888876 78888886332 3458898886 99999999999976444333
No 195
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.96 E-value=2.1e-08 Score=100.06 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-cEEEccEEEEccChHHHhhh
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~i~ad~VI~A~~~~~~~~l 312 (508)
..+.+.+.+.+++.|+++++++.|++|..++++. ..|++.+| +++.+|.||+|+|...-..+
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 3566778888889999999999999998643332 24666667 57999999999997654443
No 196
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.95 E-value=3e-08 Score=83.48 Aligned_cols=48 Identities=31% Similarity=0.478 Sum_probs=35.0
Q ss_pred HHHHHHHcCCEEE-eCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccCh
Q 010539 256 IVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 306 (508)
Q Consensus 256 l~~~l~~~g~~i~-~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~ 306 (508)
+.+.+ ..|++|. ...+|+.|...+++. .|.+.+|..+.+|+||+|+|.
T Consensus 107 ~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 33344 3454443 566999999866553 588889989999999999985
No 197
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.94 E-value=2e-08 Score=102.83 Aligned_cols=40 Identities=48% Similarity=0.684 Sum_probs=36.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc--cCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLVGA 95 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~--~~~g~ 95 (508)
.++||||||+|.+||+||..+++.|.+|+|||+.+ ..+|.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 46899999999999999999999999999999998 55553
No 198
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.93 E-value=7.3e-09 Score=98.23 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=63.6
Q ss_pred ccccchHHHHHHHHHc-CCEEEeCceeeEEEEcCCCcEEEEEEc-----CCcEEEccEEEEccChHHHhhhcCcchhccH
Q 010539 248 PPERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLT-----NGNVIDGDAYVFATPVDILKLQLPENWKEMA 321 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~~g~~~~V~~~-----~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~ 321 (508)
+.+.|.+.|.+.+.+. |++++++++|+.|++.++|. |.|.+. +..+++|+.|++.+|.+.+..|-.....
T Consensus 179 nFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~--- 254 (488)
T PF06039_consen 179 NFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP--- 254 (488)
T ss_pred cHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCCh---
Confidence 4678999999999888 99999999999999977763 345542 2357999999999999988776422211
Q ss_pred HHHHHhhcCCcCEEEEEEEeccc
Q 010539 322 YFKRLEKLVGVPVINIHIWFDRK 344 (508)
Q Consensus 322 ~~~~~~~~~~~~~~~v~~~~~~~ 344 (508)
....+...|+...++..+.+
T Consensus 255 ---e~~gyggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 255 ---EGKGYGGFPVSGQFLRCKNP 274 (488)
T ss_pred ---hhcccCCCcccceEEecCCH
Confidence 11223444666666666543
No 199
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.93 E-value=1.2e-07 Score=92.92 Aligned_cols=43 Identities=40% Similarity=0.436 Sum_probs=39.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN 98 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~ 98 (508)
.++|+||||||++|..||.++++.|.+|+|+|+....+|.|-+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 5799999999999999999999999999999999877776654
No 200
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.92 E-value=1.6e-08 Score=102.96 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHc-CCEEEeCceeeEEEEcC-----CCcEEEEEEc---CCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~-g~~i~~~~~V~~I~~~~-----~g~~~~V~~~---~g~--~i~ad~VI~A~~~~~ 308 (508)
..+...|.+.+.+. |++|+.++.|+++..++ ++.+++|... +|+ .+.++.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 35667777777665 89999999999998643 3677787753 343 589999999998754
No 201
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.92 E-value=4.6e-08 Score=93.22 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=44.4
Q ss_pred cccchHHHHHHHHH-cCCEEEeCceeeEEEEcCCCcEEEEEEcCC----cEEEccEEEEccCh
Q 010539 249 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 306 (508)
Q Consensus 249 ~~~l~~~l~~~l~~-~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g----~~i~ad~VI~A~~~ 306 (508)
-..++..|.+++++ .+++|+.++.+.+|..+++..+.+|.+.+. .++.++.||+|||.
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 35677888888876 589999999999999844425557776432 46899999999975
No 202
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.92 E-value=6.7e-09 Score=106.23 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.+||+|||||++||+||..|+++|++|+|+|+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 45899999999999999999999999999999863
No 203
>PRK12831 putative oxidoreductase; Provisional
Probab=98.91 E-value=1.7e-08 Score=100.82 Aligned_cols=42 Identities=36% Similarity=0.389 Sum_probs=37.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+...+||+|||||++||+||++|++.|++|+|+|+.+..+|.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~ 178 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGV 178 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCe
Confidence 456789999999999999999999999999999998877654
No 204
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.91 E-value=5.4e-08 Score=99.53 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCC--CcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~--g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
.+...+...+.+.+++|+.++.|+++..+++ |++++|.. .+|+ .+.|+.||+|||.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 3334455556666789999999999997443 67888764 3453 588999999999864
No 205
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.91 E-value=2.2e-08 Score=107.44 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+..++|+|||||+|||+||++|+++|++|+|+|+.+..+|.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~ 344 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV 344 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce
Confidence 45689999999999999999999999999999999988774
No 206
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.90 E-value=4e-08 Score=89.86 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=58.9
Q ss_pred hhccCCeEEeec------CCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC---C--cEEEccEEEE
Q 010539 234 QEKHGSKMAFLD------GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVF 302 (508)
Q Consensus 234 ~~~~g~~~~~~~------g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~i~ad~VI~ 302 (508)
....|+.+.++. +.....+.+.+.+.|.++|.+++++++|+.++.+.+|.+ .|...+ + +++.||.+++
T Consensus 230 ~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 230 WSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred HHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEE
Confidence 345666666654 223457888889999999999999999999998777643 344432 2 5799999999
Q ss_pred ccChHHHhhhcC
Q 010539 303 ATPVDILKLQLP 314 (508)
Q Consensus 303 A~~~~~~~~ll~ 314 (508)
++|-..+..-|+
T Consensus 309 siGRrP~t~GLg 320 (506)
T KOG1335|consen 309 SIGRRPFTEGLG 320 (506)
T ss_pred EccCcccccCCC
Confidence 999876665444
No 207
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.90 E-value=9.2e-08 Score=88.46 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC---------------CcEEEccEEEEccCh
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---------------GNVIDGDAYVFATPV 306 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~---------------g~~i~ad~VI~A~~~ 306 (508)
.+++..|.+++++.|++|.-+..+.++.++++|.+.+|.|.| |-.+.|+.-|+|-|-
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc 254 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGC 254 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccc
Confidence 578888999999999999999999999999999999998854 225788888988775
No 208
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.89 E-value=6.6e-09 Score=103.81 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ 311 (508)
..+...+.+.+++.|+++++++.|++|+.+ ++.+ .+.+.++ ++.+|.||+|+|...-..
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 356677888889999999999999999863 3332 3555556 589999999998765443
No 209
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.89 E-value=1.3e-07 Score=94.35 Aligned_cols=42 Identities=45% Similarity=0.546 Sum_probs=37.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+...+||+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcE
Confidence 446789999999999999999999999999999998877553
No 210
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.88 E-value=6.2e-08 Score=97.34 Aligned_cols=42 Identities=36% Similarity=0.380 Sum_probs=37.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
.++||+|||||++|++||..|++.|++|+|+|+.+..+|.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 469999999999999999999999999999999877776543
No 211
>PRK06116 glutathione reductase; Validated
Probab=98.88 E-value=3.7e-08 Score=98.70 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=36.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
.++||+|||||++|++||..|+++|++|+|+|+. ..+|.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 3589999999999999999999999999999986 5666543
No 212
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.86 E-value=1.4e-07 Score=91.53 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=32.9
Q ss_pred eEEEECCChHHHHHHHHHHHc--CCceEEEeccccCCC
Q 010539 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLVG 94 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~~g 94 (508)
||+|||||++|+++|+.|++. |++|+|+|+.+.+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999997 999999999876543
No 213
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.85 E-value=6.5e-08 Score=92.28 Aligned_cols=53 Identities=32% Similarity=0.477 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCc-EEEccEEEEccChH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPVD 307 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-~i~ad~VI~A~~~~ 307 (508)
+.++.+...+.|+++|++|+++++|++|+ +++ |++.+|+ +|.++.||+|+|..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVT--PDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEEC--CCc----EEEccCCeeEecCEEEEcCCCc
Confidence 57888888899999999999999999998 454 7777776 49999999999874
No 214
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.85 E-value=1.1e-07 Score=89.85 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcC-CceEEEeccccCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLVG 94 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~~~~g 94 (508)
+|+||||||.+|..+|.+|++.| .+|+|||+......
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 69999999999999999999997 79999999987643
No 215
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=2.5e-08 Score=100.15 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=37.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
+++||+|||||++|++||..+++.|++|+|+|+++.++|.+-
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 358999999999999999999999999999998777777654
No 216
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.84 E-value=3.3e-08 Score=99.63 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
..+||+|||||++|++||..|++.|++|+|+|+. ..+|.+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 4699999999999999999999999999999986 5666654
No 217
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=2.6e-08 Score=97.04 Aligned_cols=42 Identities=33% Similarity=0.530 Sum_probs=38.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
...+|+|||||+|||++|+.|.+.|++|+++||.+.++|.+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 468999999999999999999999999999999999988654
No 218
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=1.2e-08 Score=91.21 Aligned_cols=40 Identities=33% Similarity=0.511 Sum_probs=37.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY 96 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~ 96 (508)
++|++|||||++|+..|..|++.|++|+|+|+++.+||.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 4799999999999999999999999999999999998864
No 219
>PTZ00058 glutathione reductase; Provisional
Probab=98.81 E-value=8.2e-08 Score=97.38 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=37.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN 98 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~ 98 (508)
..++||+|||||++|++||..+++.|.+|+|+|+. .+||.|-+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 36789999999999999999999999999999986 56676544
No 220
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=1.2e-07 Score=95.34 Aligned_cols=42 Identities=31% Similarity=0.377 Sum_probs=37.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN 98 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~ 98 (508)
..+||+|||||++|++||..|+++|++|+|+|+.. ++|.+.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 45899999999999999999999999999999876 6665543
No 221
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.80 E-value=1.7e-07 Score=94.49 Aligned_cols=33 Identities=39% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEec
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~ 88 (508)
..+|++|||||++|++||..|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 458999999999999999999999999999998
No 222
>PLN02546 glutathione reductase
Probab=98.78 E-value=2.1e-07 Score=94.43 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEec
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~ 88 (508)
.++||+|||||++|+.||..|++.|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 223
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.77 E-value=2.1e-07 Score=97.33 Aligned_cols=41 Identities=32% Similarity=0.401 Sum_probs=37.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
...++|+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 35679999999999999999999999999999999887653
No 224
>PRK06370 mercuric reductase; Validated
Probab=98.77 E-value=2e-07 Score=93.84 Aligned_cols=42 Identities=31% Similarity=0.394 Sum_probs=36.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
+.++||+|||||++|++||..|++.|++|+|+|+. ..+|.+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 35699999999999999999999999999999986 4445443
No 225
>PRK09897 hypothetical protein; Provisional
Probab=98.77 E-value=1.3e-07 Score=94.83 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=38.4
Q ss_pred hHHHHHHHHHcC--CEEEeCceeeEEEEcCCCcEEEEEEcC-CcEEEccEEEEccCh
Q 010539 253 CLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPV 306 (508)
Q Consensus 253 ~~~l~~~l~~~g--~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~~i~ad~VI~A~~~ 306 (508)
.+.+.+.+.+.| ++++.+++|++|...+++ +.|++.+ |..+.+|+||+|+|.
T Consensus 110 f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 110 FLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEEECCCC
Confidence 334556666676 788899999999875444 3477654 467999999999996
No 226
>PLN02507 glutathione reductase
Probab=98.76 E-value=2.3e-07 Score=93.62 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEec
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~ 88 (508)
..++||+|||||++|+.||..|++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3568999999999999999999999999999996
No 227
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.76 E-value=1e-07 Score=85.23 Aligned_cols=59 Identities=25% Similarity=0.225 Sum_probs=44.4
Q ss_pred ccchHHHHHHHHHc------CCEEEeCceeeEEEEcCCCcEEEEEEcC--C--cEEEccEEEEccChHHH
Q 010539 250 ERLCLPIVEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLTN--G--NVIDGDAYVFATPVDIL 309 (508)
Q Consensus 250 ~~l~~~l~~~l~~~------g~~i~~~~~V~~I~~~~~g~~~~V~~~~--g--~~i~ad~VI~A~~~~~~ 309 (508)
..++..|...+++. -++|.+|++|+.|.. .+|.+.+|+..+ | ..+.++.||+|+|....
T Consensus 139 fei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 139 FEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred hHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 35666666666543 379999999999996 788888888643 3 34889999999987554
No 228
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.76 E-value=8.3e-08 Score=102.04 Aligned_cols=41 Identities=37% Similarity=0.408 Sum_probs=36.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
...+||+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence 45679999999999999999999999999999998776554
No 229
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.75 E-value=1.8e-07 Score=101.42 Aligned_cols=40 Identities=40% Similarity=0.439 Sum_probs=36.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
..++|+|||||++||+||+.|+++|++|+|+|+.+..+|.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~ 468 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV 468 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcce
Confidence 5689999999999999999999999999999999887664
No 230
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.75 E-value=2.2e-07 Score=85.18 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
.....||||||||++|.+.|+.|+|.|.+|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 356789999999999999999999999999999987
No 231
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.74 E-value=2.9e-07 Score=99.51 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=33.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.++||+|||||.+||+||..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 232
>PRK10262 thioredoxin reductase; Provisional
Probab=98.74 E-value=5.7e-08 Score=92.83 Aligned_cols=35 Identities=37% Similarity=0.592 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.+||+|||||++||+||..|+++|++|+++|+.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~ 39 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME 39 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec
Confidence 67899999999999999999999999999999653
No 233
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.73 E-value=3.9e-07 Score=91.39 Aligned_cols=40 Identities=43% Similarity=0.527 Sum_probs=36.7
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
...++|+|||||++||++|+.|++.|++|+|+|+.+..+|
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG 177 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCc
Confidence 4568999999999999999999999999999999987755
No 234
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.72 E-value=2e-07 Score=91.30 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=42.1
Q ss_pred hHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCc--EEEccEEEEccChHH
Q 010539 253 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 253 ~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~i~ad~VI~A~~~~~ 308 (508)
.+.+.+.+++.|++|+++++|++++..+++ +.+++++|+ ++.+|.|++|+|-..
T Consensus 217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 217 SKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 334666777778999999999999974444 357777765 689999999999753
No 235
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.71 E-value=1.6e-07 Score=92.42 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=41.7
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
+.+.+++.|++|++++.|++|.. ++. +.|.+.+|+++.+|.||+|+|...-..|
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l 245 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQL 245 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHH
Confidence 55566788999999999999974 232 3477788888999999999997643333
No 236
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.71 E-value=5.9e-08 Score=86.00 Aligned_cols=32 Identities=50% Similarity=0.634 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
||+|||||++|++||..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998765
No 237
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.71 E-value=1e-06 Score=93.67 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~ 92 (508)
++|+|||||++||++|+.|++. |++|+|+|++...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 4799999999999999999998 8999999998743
No 238
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.71 E-value=7.5e-08 Score=96.37 Aligned_cols=41 Identities=32% Similarity=0.471 Sum_probs=37.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+..++|+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~ 179 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL 179 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCce
Confidence 35689999999999999999999999999999999877653
No 239
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.70 E-value=3.6e-07 Score=92.12 Aligned_cols=40 Identities=33% Similarity=0.401 Sum_probs=35.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
.+||+|||||++|++||+.|++.|++|+|+|+ +..+|.+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 38999999999999999999999999999999 66777543
No 240
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.69 E-value=3.8e-07 Score=99.47 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=48.3
Q ss_pred eEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc----CCcEEEccEEEEccChHHHhhh
Q 010539 240 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT----NGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 240 ~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~----~g~~i~ad~VI~A~~~~~~~~l 312 (508)
.+.++... ..+...+.+.+++.|++|++++.|++|.. ++.+.+|+.. +++++.+|.|+++.|...-..|
T Consensus 343 vV~vv~~~--~~~~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L 415 (985)
T TIGR01372 343 VVAIIDAR--ADVSPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHL 415 (985)
T ss_pred eEEEEccC--cchhHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHH
Confidence 34454432 23455677888999999999999999974 3444445543 4567999999999987554444
No 241
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.68 E-value=2.4e-07 Score=92.56 Aligned_cols=41 Identities=32% Similarity=0.419 Sum_probs=36.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc-CCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LVGAY 96 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~-~~g~~ 96 (508)
+++||+|||||++|++||..|++.|++|+|+|+++. .+|.+
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 468999999999999999999999999999999864 45544
No 242
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.68 E-value=1.6e-07 Score=99.79 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 310 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~ 310 (508)
.+.+.+++.|++|++++.|++|..++++....|.+.+|+++.+|.||+|+|...-.
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 36667788999999999999997533334556788889899999999999875433
No 243
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.68 E-value=5.1e-07 Score=90.76 Aligned_cols=42 Identities=40% Similarity=0.544 Sum_probs=37.4
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+...++|+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~ 181 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGL 181 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCce
Confidence 345679999999999999999999999999999999887653
No 244
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.68 E-value=9.2e-08 Score=99.58 Aligned_cols=41 Identities=34% Similarity=0.458 Sum_probs=37.6
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
+..++|+|||||++||++|+.|++.|++|+|+|+.+..+|.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~ 348 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM 348 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCe
Confidence 35789999999999999999999999999999999987664
No 245
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.67 E-value=5.8e-08 Score=102.79 Aligned_cols=40 Identities=40% Similarity=0.560 Sum_probs=36.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
...++|+|||||++||+||+.|+++|++|+|+|+.+..+|
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence 4568999999999999999999999999999999887654
No 246
>PRK14694 putative mercuric reductase; Provisional
Probab=98.67 E-value=2.3e-07 Score=93.38 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=37.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
..++||+|||||++|++||..|++.|++|+|+|+. .++|.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 46799999999999999999999999999999986 4666544
No 247
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.67 E-value=1.7e-07 Score=94.42 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
.++||+|||||++|++||..|++.|++|+|+|+ +..+|.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 468999999999999999999999999999999 55666543
No 248
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.66 E-value=2e-07 Score=99.16 Aligned_cols=51 Identities=14% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.++++|++|++++.|++|.. ++.+..|++.+|+++.+|.||+|+|...
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 55667788999999999999974 3455678888998999999999999753
No 249
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.65 E-value=2.9e-07 Score=92.44 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=34.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY 96 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~ 96 (508)
+.||+|||||++|+.||..|+++|.+|+|+|+.. .+|.+
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c 39 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAA 39 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcc
Confidence 3689999999999999999999999999999875 55544
No 250
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.63 E-value=3.8e-07 Score=89.27 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=41.1
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.+++.|++++++++|++|..+++ ...|.+.+|+++.+|.||+|+|...
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDS--GIRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCC--EEEEEEcCCcEEECCEEEECcCCCc
Confidence 55667788999999999999986332 2347788888899999999999754
No 251
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.60 E-value=2.7e-07 Score=87.58 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcC
Q 010539 254 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 314 (508)
Q Consensus 254 ~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~ 314 (508)
+.+.+.++++|++|.+++.+.+++.+++|++..|.+.+|+++.||.||+.+|......++.
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 3466777889999999999999998888999999999999999999999999987766654
No 252
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.60 E-value=3.5e-07 Score=90.04 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 260 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 260 l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.|+++++++.|++|+. ++ +. |.+.+|+++.+|++|+|||...
T Consensus 68 ~~~~~i~~~~g~~V~~id~-~~-~~--v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGR-DT-RE--LVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEEC-CC-CE--EEECCCCEEEcCEEEEccCCCC
Confidence 3457899999999999986 33 33 6677888899999999999874
No 253
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.57 E-value=8e-07 Score=89.48 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=35.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCCh
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~ 97 (508)
++||+|||||++|++||.+|++.|++|+|+|++ ..+|.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 589999999999999999999999999999985 4555543
No 254
>PRK06370 mercuric reductase; Validated
Probab=98.55 E-value=1.2e-06 Score=88.14 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 68999999999999999999999999999987644
No 255
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.54 E-value=2.7e-07 Score=92.56 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcC--CceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g--~~V~vlE~~~~~ 92 (508)
++|+|||||++|+++|..|++.+ .+|+|+|+++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 37999999999999999999875 589999998754
No 256
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.53 E-value=1.8e-06 Score=86.64 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=34.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
+||+|||+|++|+++|+.|++.|++|+|||++...++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999887753
No 257
>PRK13748 putative mercuric reductase; Provisional
Probab=98.53 E-value=3.4e-07 Score=94.58 Aligned_cols=42 Identities=29% Similarity=0.477 Sum_probs=37.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN 98 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~ 98 (508)
..+||+|||||++|++||..|++.|.+|+|+|++ .+||.+.+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 4699999999999999999999999999999987 66666543
No 258
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.53 E-value=2.1e-06 Score=86.75 Aligned_cols=41 Identities=37% Similarity=0.390 Sum_probs=37.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
..++||||||||.|||.||..+++.|.+|+|+|+....+|.
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 35689999999999999999999999999999998877543
No 259
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.52 E-value=5.8e-07 Score=89.20 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
..++++|||||||.+|+++|..|.+.+++|+|+|+++..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM 45 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence 346789999999999999999998778999999987643
No 260
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.52 E-value=1.1e-06 Score=88.17 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.+.+.+++.|++++++++|++|.. ++.+..+.+.++ ++.+|.||+|+|...
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 356667788999999999999964 344445666555 699999999999754
No 261
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.51 E-value=1.7e-06 Score=87.23 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 68999999999999999999999999999987644
No 262
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.51 E-value=4.9e-07 Score=91.04 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=34.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY 96 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~ 96 (508)
+||+|||||++|++||..|+++|++|+|+|+.. .+|.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 699999999999999999999999999999876 55554
No 263
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.50 E-value=1e-06 Score=78.71 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=46.8
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCC---cEEEEEEcCCcEEEccEEEEccChHH
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG---TVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g---~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
...+...+.+.++..|.++.+|-+|..|....++ .-+.|....++++++..||-|+|...
T Consensus 195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH
Confidence 4567788899999999999999999999865442 22234445578899999999999864
No 264
>PRK02106 choline dehydrogenase; Validated
Probab=98.50 E-value=1.9e-06 Score=88.76 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=33.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHH-cCCceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~-~g~~V~vlE~~~~ 91 (508)
..+|+||||||.+|+.+|.+|++ .|++|+|||+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 55899999999999999999999 7999999999964
No 265
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.49 E-value=2.9e-06 Score=86.93 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=39.8
Q ss_pred hHHHHHHHH-HcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-c---EEEccEEEEccChHH
Q 010539 253 CLPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVDI 308 (508)
Q Consensus 253 ~~~l~~~l~-~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~---~i~ad~VI~A~~~~~ 308 (508)
...++..+. ..+++|++++.|++|.. +++++++|.+.++ . .+.++.||+|+|+-.
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCC
Confidence 334444443 45799999999999998 4667888887443 2 358999999999833
No 266
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.49 E-value=6.8e-07 Score=95.16 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 258 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 258 ~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+++.|+++++++.|++|+. +.++ |.+.+|+++.+|++|+|||...
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~--~~~~--V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINR--QEKV--IHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeC--CCcE--EEECCCcEEECCEEEECCCCCc
Confidence 344567999999999999985 2333 6778888899999999999864
No 267
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.49 E-value=1.8e-06 Score=86.32 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 58999999999999999999999999999988644
No 268
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.48 E-value=2.4e-06 Score=77.10 Aligned_cols=37 Identities=43% Similarity=0.635 Sum_probs=34.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
...||||||||.+||.||..|+.+|.+|+|+|+....
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccc
Confidence 5689999999999999999999999999999987644
No 269
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.48 E-value=1.4e-06 Score=86.88 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=38.8
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.+++.|+++++++.|++|.. ++.+ +.+.+|+++.+|.||+|+|...
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccC
Confidence 55566778999999999999974 3433 4556777899999999999754
No 270
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.46 E-value=2.2e-06 Score=86.15 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=41.6
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ 311 (508)
+.+.+++.|++|++++.|++|+.++++ + .|.+.+|+++.+|.||+|+|...-..
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~-~-~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDG-V-VVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCE-E-EEEECCCcEEEecEEEEeecCCcCCC
Confidence 556667889999999999999864333 3 36667788899999999998754433
No 271
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.46 E-value=2.1e-06 Score=86.79 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEec
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~ 88 (508)
++||+|||||++|++||..|+++|++|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 58999999999999999999999999999996
No 272
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.45 E-value=2.2e-06 Score=83.89 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=35.1
Q ss_pred HHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 258 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 258 ~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+++.|++++++++|++|+. ++ +. |.+ ++.++.+|+||+|||...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~-~~-~~--v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDA-EA-QV--VKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHHHhCCCEEECCCEEEEEEC-CC-CE--EEE-CCeEEeCCEEEECCCCCC
Confidence 334567899999999999986 33 33 555 456799999999999853
No 273
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.45 E-value=4.6e-06 Score=83.81 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=37.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc-CCceEEEecc--------ccCCCCChh
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEAR--------DVLVGAYPN 98 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~-g~~V~vlE~~--------~~~~g~~~~ 98 (508)
.++||+|||||++|..||..+++. |.+|+|+|+. +.++|.|-+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 469999999999999999999997 9999999974 456776544
No 274
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.45 E-value=2.1e-06 Score=86.60 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC--cEEEccEEEEccChHHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDIL 309 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~i~ad~VI~A~~~~~~ 309 (508)
+.+.+++.|++|++++.|++|+..+++.+..+.+.+| +++.+|.||+|+|...-
T Consensus 227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 5556677899999999999997521333433445566 36999999999998643
No 275
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.45 E-value=1.5e-05 Score=82.17 Aligned_cols=41 Identities=37% Similarity=0.458 Sum_probs=37.1
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
....+|+|||||++||++|+.|++.|++|+|+|+.+..+|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~ 175 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGM 175 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCe
Confidence 45679999999999999999999999999999999887663
No 276
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.44 E-value=7.6e-07 Score=94.80 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=38.2
Q ss_pred HHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 258 EHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 258 ~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.++++|++++++++|++|+.. .+. |++.+|+++.+|++|+|||...
T Consensus 62 ~~~~~~gv~~~~g~~V~~Id~~--~k~--V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 62 DWYEKHGITLYTGETVIQIDTD--QKQ--VITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHHCCCEEEcCCeEEEEECC--CCE--EEECCCcEeeCCEEEECCCCCc
Confidence 3446689999999999999862 333 7778888899999999999864
No 277
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.43 E-value=2.7e-06 Score=87.71 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=35.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEecc-ccCCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLVGAY 96 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~-~~~~g~~ 96 (508)
.++||+|||+|++|..||..+++.|.+|+|+|+. +.+||.|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 4689999999999999999999999999999975 3566654
No 278
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.42 E-value=1.6e-06 Score=86.38 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~ 92 (508)
.+|||||||++|++||..|++. +++|+|+|+++..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 5899999999999999999987 6899999998744
No 279
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=5.5e-07 Score=86.86 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=41.4
Q ss_pred HHHHHHHHc-CCEEEeCceeeEEEEcCCC-cEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 255 PIVEHIQSL-GGEVRLNSRVQKIELNDDG-TVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 255 ~l~~~l~~~-g~~i~~~~~V~~I~~~~~g-~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
.+.+.+++. +..| ....|..|.. +++ ++++|.+.+|..+.|+.||+|||...-.++
T Consensus 105 ~mk~~le~~~NL~l-~q~~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 105 AMKNELENQPNLHL-LQGEVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHHhcCCCcee-hHhhhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 344455543 5676 4557888876 444 588999999999999999999998765554
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=98.41 E-value=8.3e-06 Score=84.93 Aligned_cols=42 Identities=38% Similarity=0.447 Sum_probs=37.5
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
..+..+|+|||+|++|+++|..|++.|++|+|+|+.+.++|.
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~ 321 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGV 321 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 346689999999999999999999999999999999887553
No 281
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.41 E-value=9.5e-07 Score=86.13 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=37.0
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+.+.+++.|++++.+ +|++|+.+ + .. |.+.+|+++.+|++|+|+|....
T Consensus 60 ~~~~~~~~gv~~~~~-~v~~id~~-~-~~--V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 60 LRRLARQAGARFVIA-EATGIDPD-R-RK--VLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHHHHHhcCCEEEEE-EEEEEecc-c-CE--EEECCCCcccccEEEEccCCCCC
Confidence 344456678999765 89999863 2 33 77888878999999999998653
No 282
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=3.6e-06 Score=84.56 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=33.0
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY 96 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~ 96 (508)
+|+|||||++|++||..|++.|.+|+|+|+.. .+|.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccC
Confidence 79999999999999999999999999999875 44443
No 283
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=2.5e-06 Score=85.94 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=40.6
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC---cEEEccEEEEccChHHHhhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~i~ad~VI~A~~~~~~~~l 312 (508)
+.+.+++.|++|+++++|++|+.+++ .+ .+.+.+| +++.+|.||+|+|...-..+
T Consensus 219 l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 219 AERALKKRGIKIKTGAKAKKVEQTDD-GV-TVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 45566778999999999999986433 22 3555555 67999999999998654443
No 284
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.39 E-value=8.7e-06 Score=81.96 Aligned_cols=33 Identities=36% Similarity=0.550 Sum_probs=31.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
++|++|||||++|+.||..+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 285
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.39 E-value=2.8e-06 Score=85.69 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=39.0
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC--cEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~i~ad~VI~A~~~~~ 308 (508)
+.+.+++.|+++++++.|++|+.+ ++.+ .+.+.+| +++.+|.||+|+|...
T Consensus 217 ~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 217 VAKALKKKGVKILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcc
Confidence 455667789999999999999864 3333 3555566 4799999999999764
No 286
>PRK07846 mycothione reductase; Reviewed
Probab=98.38 E-value=4.4e-06 Score=83.49 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=38.1
Q ss_pred HcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhc
Q 010539 262 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 313 (508)
Q Consensus 262 ~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll 313 (508)
+.|++++++++|++|+.+ ++.+ .|.+.+|+++.+|.||+|+|...-..++
T Consensus 218 ~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred hcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCcccc
Confidence 457999999999999863 3322 4667778889999999999986544444
No 287
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=5.4e-06 Score=83.26 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=32.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+++|||||.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 58999999999999999999999999999987643
No 288
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.36 E-value=2.3e-06 Score=78.37 Aligned_cols=226 Identities=19% Similarity=0.280 Sum_probs=114.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc----CCceEEEeccccCCCC----------------------ChhHHHHHHHcCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLVGA----------------------YPNIQNLFGELGIN 109 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~----g~~V~vlE~~~~~~g~----------------------~~~~~~l~~~lg~~ 109 (508)
..+.+-|||+|+|||++|..|.+. |.++.|+|.-+..||. +..+.++++.+.--
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsIPSL 100 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSIPSL 100 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcCccc
Confidence 457799999999999999999886 6799999998887554 12334455443211
Q ss_pred CccccccccceeecCCCCCCc--ccccCCCCCCCchhHHHHHHhcCCCCChH-----HHHHHhhcchhhHhcCcchhhcc
Q 010539 110 DRLQWKEHSMIFAMPNKPGEF--SRFDFPEVLPAPLNGILAILRNNEMLTWP-----EKVKFAIGLLPAIIGGQAYVEAQ 182 (508)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 182 (508)
+-...+..+.+|.+....... +++.-..+.. +.. ...+.+. +.+.++. ...+.+
T Consensus 101 ei~naSvldEfy~~d~~dPn~s~cRli~k~g~r--------v~d-dg~~tl~~~~~~ei~kL~~----------t~EE~L 161 (587)
T COG4716 101 EIPNASVLDEFYWLDKDDPNSSNCRLIHKRGRR--------VDD-DGSFTLNNKARKEIIKLLM----------TPEEKL 161 (587)
T ss_pred cCCCcHHHHHHHhccCCCCCccceeeeeccccc--------ccc-ccccccChhhHHHHHHHHc----------CcHHhc
Confidence 111122222333333222211 1111111000 000 0000000 1111111 112335
Q ss_pred cCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCC----eEEeecCCccccchHHHHH
Q 010539 183 DGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS----KMAFLDGNPPERLCLPIVE 258 (508)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~g~~~~~l~~~l~~ 258 (508)
++.++++|+...-+... |..++...+.... .-|+......+.+++....|- ...+..-...+.++..|..
T Consensus 162 ~~~tI~d~Fse~FF~sN-----FW~yW~tmFAFek-WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~ 235 (587)
T COG4716 162 DDLTIEDWFSEDFFKSN-----FWYYWQTMFAFEK-WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLIT 235 (587)
T ss_pred CCccHHHhhhHhhhhhh-----HHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHH
Confidence 67889999877533322 2222222222211 112222333334443332221 2233333457889999999
Q ss_pred HHHHcCCEEEeCceeeEEEEcCC-CcE--EEE-EEcCCcEEE---ccEEEEccCh
Q 010539 259 HIQSLGGEVRLNSRVQKIELNDD-GTV--KNF-LLTNGNVID---GDAYVFATPV 306 (508)
Q Consensus 259 ~l~~~g~~i~~~~~V~~I~~~~~-g~~--~~V-~~~~g~~i~---ad~VI~A~~~ 306 (508)
.|+++||+|..++.|..|+.+.. |+. ..+ +..+++++. -|.|+++.|.
T Consensus 236 yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgs 290 (587)
T COG4716 236 YLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGS 290 (587)
T ss_pred HHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecce
Confidence 99999999999999999987432 321 112 244554432 4567776654
No 289
>PRK06116 glutathione reductase; Validated
Probab=98.35 E-value=5.2e-06 Score=83.34 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=41.9
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 309 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~ 309 (508)
+.+.+++.|+++++++.|.+|+.++++.+ .|.+.+|+++.+|.||+|+|...-
T Consensus 214 l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 214 LVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcC
Confidence 55667788999999999999986444433 467778888999999999987543
No 290
>PLN02507 glutathione reductase
Probab=98.35 E-value=4.3e-06 Score=84.49 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=42.0
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
+.+.+++.|++|++++.|++|+.++++ + .|.+.+|+++.+|.||+|+|...-..+
T Consensus 250 l~~~l~~~GI~i~~~~~V~~i~~~~~~-~-~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 250 VARNLEGRGINLHPRTNLTQLTKTEGG-I-KVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCCe-E-EEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 555667889999999999999863333 2 466777878999999999987544333
No 291
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.34 E-value=4.6e-06 Score=83.48 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=40.1
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.+++.|+++++++.|++|..++++. .|++.+|+++.+|.||+|+|...
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTDDGL--KVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCeE--EEEEcCCcEeecCEEEEeeCCCc
Confidence 4556677899999999999998644442 36666787899999999999753
No 292
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.33 E-value=5.4e-06 Score=83.54 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=32.1
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 58999999999999999999999999999977644
No 293
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.31 E-value=7.4e-06 Score=82.37 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
..+|+|||||..|+..|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 368999999999999999999999999999987644
No 294
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.30 E-value=4.9e-05 Score=77.63 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=51.4
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc---CC--cEEEccEEEEccChHHHh
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILK 310 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~i~ad~VI~A~~~~~~~ 310 (508)
+|.+++..+++.+.++|++|+++++|++|.. +++.+++|++. +| .++.|++||+|+|+|+-.
T Consensus 126 dp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 126 DPFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 6899999999999999999999999999997 45556666653 24 369999999999998643
No 295
>PRK07846 mycothione reductase; Reviewed
Probab=98.29 E-value=3.5e-06 Score=84.16 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 010539 448 PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488 (508)
Q Consensus 448 ~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~ 488 (508)
..+++..++||.+||.+... .....|...|+.+|+.|+.
T Consensus 286 ~~~~Ts~p~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 286 EYQRTSAEGVFALGDVSSPY--QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred CCcccCCCCEEEEeecCCCc--cChhHHHHHHHHHHHHHcC
Confidence 34567789999999998753 5667889999999999874
No 296
>PTZ00058 glutathione reductase; Provisional
Probab=98.29 E-value=8.1e-06 Score=83.04 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=32.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
..+|+|||||..|+..|..|++.|.+|+|+|+++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 468999999999999999999999999999987643
No 297
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=1.1e-05 Score=77.47 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--C-CceEEEeccccCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADA--G-HKPLLLEARDVLVGA 95 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~--g-~~V~vlE~~~~~~g~ 95 (508)
+++|+|||+|++|+++|.+|.+. . ..|.|+|.+...+..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G 42 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG 42 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC
Confidence 47999999999999999999986 1 239999999877543
No 298
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.28 E-value=9.5e-06 Score=81.55 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
.+.+.+++.|++|++++.|++|..++++. ..|.+.+|+++.+|.||+|+|...-..+
T Consensus 236 ~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 236 ELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 46667788899999999999998643442 3466667778999999999997544443
No 299
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.28 E-value=1.2e-06 Score=84.89 Aligned_cols=39 Identities=38% Similarity=0.408 Sum_probs=34.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
...+|+|||||++|+++|..|++.|++|+|+|+.+..+|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg 55 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG 55 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence 447999999999999999999999999999999876633
No 300
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.28 E-value=7.2e-06 Score=78.19 Aligned_cols=36 Identities=33% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC-CceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~~~ 92 (508)
.+|+|+||.|+++|+.|..|.+.+ .+++.||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 479999999999999999999985 899999988744
No 301
>PLN02785 Protein HOTHEAD
Probab=98.27 E-value=3.4e-05 Score=79.16 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=33.6
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
....+|+||||||.+|+.+|.+|++ +.+|+|||++..
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 3567999999999999999999999 699999999864
No 302
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.25 E-value=1.6e-05 Score=79.58 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCCCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHH
Q 010539 448 PLQRSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ 488 (508)
Q Consensus 448 ~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~ 488 (508)
+.+++..++||.+||.+.+. ...+-|...|+.+|+.|+.
T Consensus 289 ~~~~Ts~~~IyA~GD~~~~~--~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 289 EYGRTSARGVWALGDVSSPY--QLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CCcccCCCCEEEeecccCcc--cChhHHHHHHHHHHHHhcC
Confidence 34567789999999998753 4667789999999999974
No 303
>PRK14727 putative mercuric reductase; Provisional
Probab=98.25 E-value=1.9e-05 Score=79.69 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
+.+.+++.|++|++++.|++|..++++ +.+.+.++ ++.+|.||+|+|...-..+
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHD 287 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccC
Confidence 556677889999999999999864332 23566566 5999999999998754443
No 304
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.23 E-value=9.1e-06 Score=81.06 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.+++.|+++++++.|++|+ +. .|++.+|+++.+|.||+|+|...
T Consensus 195 l~~~l~~~gI~i~~~~~v~~i~--~~----~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 195 ILDELDKREIPYRLNEEIDAIN--GN----EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHhcCCEEEECCeEEEEe--CC----EEEECCCCEEEeCEEEECcCCCc
Confidence 5566778899999999999996 22 26666787899999999999754
No 305
>PRK14694 putative mercuric reductase; Provisional
Probab=98.22 E-value=3e-05 Score=78.11 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhc
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 313 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll 313 (508)
+.+.+++.|++|++++.|++|+.+ ++. +.+.+.++ ++.+|.||+|+|...-..++
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l 278 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTENL 278 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCCC
Confidence 556667889999999999999863 332 23555555 69999999999986544443
No 306
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.9e-05 Score=73.31 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=47.4
Q ss_pred eEEeecCCccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEc
Q 010539 240 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFA 303 (508)
Q Consensus 240 ~~~~~~g~~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A 303 (508)
...++..| ...|.+++++...-.|++..+|.++.+|...++|++.+|...++ ..++++||+-
T Consensus 223 ~ylyP~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~d 284 (440)
T KOG1439|consen 223 PYLYPLYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICD 284 (440)
T ss_pred cceecccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEec
Confidence 35555555 67999999988888899999999999999866788866665444 5777766653
No 307
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.2e-05 Score=81.03 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|+|||+|.+|+.+|..|++.|.+|+|+|+++..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 68999999999999999999999999999987643
No 308
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.20 E-value=8.4e-07 Score=80.36 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 307 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~ 307 (508)
..+.+.+.+.++..|+++|.++.++++....+|-.. +.+..|..-..|.+++|+|-.
T Consensus 230 ~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 230 EMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred HHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCC
Confidence 456677888999999999999999999986666443 444566545599999999865
No 309
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.18 E-value=2e-06 Score=91.81 Aligned_cols=41 Identities=39% Similarity=0.555 Sum_probs=37.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY 96 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~ 96 (508)
..+||+|||||+|||+||++|++.|++|+|+|+.+..+|..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l 576 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVV 576 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCcee
Confidence 45899999999999999999999999999999998887753
No 310
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2.8e-05 Score=78.27 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+++|||||..|+..|..|++.|.+|+|+|+.+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 58999999999999999999999999999988644
No 311
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.15 E-value=1.7e-05 Score=78.81 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChH
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 307 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~ 307 (508)
.+.+.|++.|++++++++|++|. +++ |.+.+|+++.+|.||+|+|..
T Consensus 233 ~~~~~L~~~gV~v~~~~~v~~v~--~~~----v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 233 YGQRRLRRLGVDIRTKTAVKEVL--DKE----VVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHCCCEEEeCCeEEEEe--CCE----EEECCCCEEEccEEEEccCCC
Confidence 35667788999999999999997 332 667888899999999999853
No 312
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.15 E-value=3e-06 Score=84.20 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=36.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHH--cCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~--~g~~V~vlE~~~~~~g~ 95 (508)
...++|+|||||+|||+||+.|++ .|++|+|+|+.+..+|.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 356789999999999999999997 69999999999988664
No 313
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.14 E-value=2.9e-05 Score=80.25 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=32.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|+|||||.+|+..|..|++.|.+|+|+|+.+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 48999999999999999999999999999988754
No 314
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.14 E-value=2.3e-05 Score=78.00 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEE--EEEcCCcEEEccEEEEccChHH
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKN--FLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~--V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.+.+.+++.|+++++++.|.+|+...+ .... +...++..+.+|.+++++|...
T Consensus 183 ~~~~~l~~~gi~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 183 ELAELLEKYGVELLLGTKVVGVEGKGN-TLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHCCcEEEeCCceEEEEcccC-cceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 366677888999999999999996433 2222 4666777899999999998754
No 315
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.13 E-value=2e-05 Score=80.30 Aligned_cols=37 Identities=41% Similarity=0.455 Sum_probs=34.2
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
..++|+||||+|.+|...|.+|++.|++|+|||++..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 4679999999999999999999988999999999864
No 316
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.13 E-value=4.4e-06 Score=79.21 Aligned_cols=45 Identities=31% Similarity=0.498 Sum_probs=40.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChhHH
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQ 100 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~~~ 100 (508)
-..+++|||||++|++||..|++.|++|.|+|+++.++|....+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 457899999999999999999999999999999999999854443
No 317
>PRK13748 putative mercuric reductase; Provisional
Probab=98.12 E-value=4.4e-05 Score=79.05 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~l 312 (508)
+.+.+++.|++|++++.|++|+.+ ++.+ .+.+.++ ++.+|.||+|+|...-..+
T Consensus 316 l~~~l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 316 VTAAFRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 556667889999999999999863 3332 3556555 6999999999997644433
No 318
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.11 E-value=3.8e-05 Score=77.78 Aligned_cols=57 Identities=21% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhc
Q 010539 255 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 313 (508)
Q Consensus 255 ~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll 313 (508)
.+.+.+++.|+++++++.|++|...+ +. ..|.+.+|+++.+|.||+|+|...-..++
T Consensus 227 ~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 227 KVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 35666778899999999999998633 32 24666778789999999999986544443
No 319
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.10 E-value=3.6e-06 Score=80.94 Aligned_cols=36 Identities=42% Similarity=0.379 Sum_probs=33.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+.||+|||||++|+.||+.|+++|++|+|+|+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 469999999999999999999999999999987754
No 320
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.08 E-value=2.8e-05 Score=78.30 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=39.8
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC---cEEEccEEEEccChHHHhhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKLQ 312 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~i~ad~VI~A~~~~~~~~l 312 (508)
+.+.|+++|++|++++.+++|...++ .+ .|+..++ +++.+|.||+|+|...-..+
T Consensus 226 l~~~L~~~gV~i~~~~~v~~v~~~~~-~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 226 VGEHMEEHGVKFKRQFVPIKVEQIEA-KV-KVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred HHHHHHHcCCEEEeCceEEEEEEcCC-eE-EEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 55667788999999999999986433 22 3554444 37999999999997544433
No 321
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.08 E-value=3.3e-05 Score=77.37 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=38.0
Q ss_pred HcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhc
Q 010539 262 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 313 (508)
Q Consensus 262 ~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll 313 (508)
+.|+++++++.|++|+.++++ + .|++.+|+++.+|.||+|+|...-..++
T Consensus 221 ~~gI~i~~~~~V~~i~~~~~~-v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQDGDG-V-TLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred hcCCEEEeCCEEEEEEEcCCe-E-EEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 357999999999999864333 2 3666678789999999999976544443
No 322
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.07 E-value=1.5e-05 Score=70.99 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=47.3
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcchhccHHHHHHhh
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEK 328 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~~~~~~~~~~~~~ 328 (508)
..++...|.+.+.++|+++ +..+|.+++. +. + -.+|.||+|+|.+. ..|.++..
T Consensus 150 ~~~ylpyl~k~l~e~Gvef-~~r~v~~l~E--------~~--~---~~~DVivNCtGL~a-~~L~gDd~----------- 203 (342)
T KOG3923|consen 150 GPKYLPYLKKRLTENGVEF-VQRRVESLEE--------VA--R---PEYDVIVNCTGLGA-GKLAGDDD----------- 203 (342)
T ss_pred chhhhHHHHHHHHhcCcEE-EEeeeccHHH--------hc--c---CCCcEEEECCcccc-ccccCCcc-----------
Confidence 3477788889999999999 5557777652 11 1 24899999999986 44544432
Q ss_pred cCCcCEEEEEEEecccccc
Q 010539 329 LVGVPVINIHIWFDRKLKN 347 (508)
Q Consensus 329 ~~~~~~~~v~~~~~~~~~~ 347 (508)
..++..+.+.++.|+-.
T Consensus 204 --~yPiRGqVl~V~ApWvk 220 (342)
T KOG3923|consen 204 --LYPIRGQVLKVDAPWVK 220 (342)
T ss_pred --eeeccceEEEeeCCcee
Confidence 12555667777777643
No 323
>PLN02546 glutathione reductase
Probab=98.06 E-value=4.9e-05 Score=77.48 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhh
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ 311 (508)
+.+.+++.|++|++++.|.+|...+++.+ .+.+.+++...+|.||+|+|...-..
T Consensus 299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 299 VAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCC
Confidence 55667788999999999999986444433 35565554445899999999765444
No 324
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.01 E-value=7e-06 Score=86.31 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=34.4
Q ss_pred CCCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 53 ~~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.++..++|+|||||+|||+||++|+++|++|+|+|+.+
T Consensus 379 ~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 379 KEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34567899999999999999999999999999999864
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.97 E-value=5.5e-05 Score=77.09 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 4689999999999999999999999999998654
No 326
>PRK10262 thioredoxin reductase; Provisional
Probab=97.96 E-value=6.4e-05 Score=71.86 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||+|.+|+.+|..|++.|.+|+++++++
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 34689999999999999999999999999999765
No 327
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.6e-05 Score=72.20 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcC-CCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcc
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 316 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~-~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~ 316 (508)
++...|.++.++..+++..-.+++++.... .+....|++++|-.++++.||++||+..-..-+|.+
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE 333 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGE 333 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCch
Confidence 566678888888888888888888888632 344567999999999999999999997655556654
No 328
>PRK14727 putative mercuric reductase; Provisional
Probab=97.96 E-value=9.7e-06 Score=81.84 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=39.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChh
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPN 98 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~ 98 (508)
+.++|++|||||++|+++|+.|++.|.+|+|+|+.+.++|.+.+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 35689999999999999999999999999999998778777654
No 329
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.94 E-value=1.7e-05 Score=66.77 Aligned_cols=41 Identities=37% Similarity=0.349 Sum_probs=35.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHc--CCceEEEeccccCCCCCh
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLVGAYP 97 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~~g~~~ 97 (508)
..||+|||+|.+||+|||.++++ ..+|.|+|++-..+|..+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 46999999999999999999965 789999999877765543
No 330
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.93 E-value=1.5e-05 Score=78.12 Aligned_cols=40 Identities=35% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HcCCceEEEeccccCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~-~~g~~V~vlE~~~~~~g~ 95 (508)
..++|+|||||+||++||.+|+ +.|++|+|+|+.+.++|.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence 4578999999999999999765 569999999999999774
No 331
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00072 Score=62.43 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=36.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
..+||+|+|-|+.-...+..|+-+|.+|+.+|+++.-|+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 4799999999999999999999999999999999988554
No 332
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=9e-05 Score=74.71 Aligned_cols=36 Identities=28% Similarity=0.495 Sum_probs=32.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
..+|+|||||.+|+..|..|++.|.+|+|+|+.+..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 368999999999999999999999999999987644
No 333
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=0.00016 Score=74.50 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=48.7
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+.+.|++|+.++.++++..+++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 5678888888888899999999999999755788888875 3453 588999999998754
No 334
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=4e-05 Score=72.68 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=32.8
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..++||||||||-||..||...++.|.+.++|-.+-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccc
Confidence 477999999999999999999999999999987663
No 335
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.88 E-value=1.4e-05 Score=77.57 Aligned_cols=35 Identities=40% Similarity=0.439 Sum_probs=32.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.||+|||||++|+.||+.|+++|++|+|+|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 47999999999999999999999999999988765
No 336
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.88 E-value=2e-05 Score=82.40 Aligned_cols=41 Identities=39% Similarity=0.552 Sum_probs=37.0
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
...++|+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~ 231 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM 231 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 35679999999999999999999999999999999887653
No 337
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00012 Score=62.46 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCcc
Q 010539 251 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 316 (508)
Q Consensus 251 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~~ 316 (508)
.|++.+.++.++.|.+|.+. .|.+++.+... -.+.++.+ .+.||.||+|+|+..-+.-+|..
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskp--F~l~td~~-~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITE-TVSKVDLSSKP--FKLWTDAR-PVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred HHHHHHHHHHHhhcceeeee-ehhhccccCCC--eEEEecCC-ceeeeeEEEecccceeeeecCCC
Confidence 45566777777889999665 68888864333 23666545 69999999999998765556654
No 338
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.83 E-value=0.00018 Score=69.65 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCc-eEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~-V~vlE~~~ 90 (508)
...|+|||+|..|+.+|..|.+.|.+ |+|+++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999999999999999987 99998653
No 339
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.83 E-value=0.00024 Score=67.25 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 34689999999999999999999999999998764
No 340
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.77 E-value=7.3e-05 Score=75.15 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=44.0
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
|.+.+++.|+++++++.+..|.. ++.+.+|.+++|..+.||.||+|+|...
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEeccccc
Confidence 66777889999999999999984 5567789999999999999999998643
No 341
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.75 E-value=0.00023 Score=72.69 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||||.+|+.+|..|++.+.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 34699999999999999999999999999998765
No 342
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.71 E-value=5.1e-05 Score=76.50 Aligned_cols=39 Identities=38% Similarity=0.525 Sum_probs=35.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
...+|+|||||++|++||..|++.|++|+|+|+.+..+|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 447999999999999999999999999999999987754
No 343
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.70 E-value=0.00026 Score=67.62 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=28.3
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcCC--ceEEEecccc
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARDV 91 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g~--~V~vlE~~~~ 91 (508)
....+|+|||||.++..++..|.+++. +|+++=++..
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 466899999999999999999999864 7888877653
No 344
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.65 E-value=5.7e-05 Score=74.36 Aligned_cols=40 Identities=38% Similarity=0.460 Sum_probs=37.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
.-.+|+|||||++||+||+.|++.|++|+|+|+.+..+|.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGl 161 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGL 161 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCcee
Confidence 4489999999999999999999999999999999998775
No 345
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.63 E-value=0.0012 Score=63.41 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=74.3
Q ss_pred CccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhhhccCCeEEeecCCccccchHHHHHHHHHc
Q 010539 184 GLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 263 (508)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~ 263 (508)
..+..+||++.|++..+.++++....+..|+.+ .+++...++..+.. . .....-+.||+ .++.+.|++ ..
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla~----a-~~gl~sV~GGN-~qI~~~ll~---~S 138 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLAG----A-TGGLWSVEGGN-WQIFEGLLE---AS 138 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeeee----c-cCCceEecCCH-HHHHHHHHH---Hc
Confidence 468899999999999999999988888777665 34544333222211 1 12334455653 677666664 46
Q ss_pred CCEEEeCceeeEE-EEcCCCc-EEEEEEcC--C-cEEEccEEEEccChHH
Q 010539 264 GGEVRLNSRVQKI-ELNDDGT-VKNFLLTN--G-NVIDGDAYVFATPVDI 308 (508)
Q Consensus 264 g~~i~~~~~V~~I-~~~~~g~-~~~V~~~~--g-~~i~ad~VI~A~~~~~ 308 (508)
|+++ +++.|++| ...+++. .+.|...+ + ..-.+|.||+|+|...
T Consensus 139 ~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 139 GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 8899 99999999 4333443 33454433 2 2345799999999953
No 346
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.62 E-value=0.00045 Score=66.34 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=45.7
Q ss_pred ccccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC-cEEEccEEEEccChHH
Q 010539 248 PPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 308 (508)
Q Consensus 248 ~~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~i~ad~VI~A~~~~~ 308 (508)
....+++.|...+++.||+|+++++|++|. +++ ..|.+..+ .++.||.||+|+|...
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEecCEEEEcCCCcc
Confidence 467889999999999999999999999993 333 34666433 4699999999998643
No 347
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.57 E-value=0.00071 Score=65.98 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=38.2
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
+.+.+++.|+++++++.|++|+ ++ .|.+.+|+++.+|.||+|+|...
T Consensus 197 ~~~~l~~~gV~v~~~~~v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 197 VLRLLARRGIEVHEGAPVTRGP--DG----ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHCCCEEEeCCeeEEEc--CC----eEEeCCCCEEecCEEEEccCCCh
Confidence 5556678899999999999996 23 26777888899999999999654
No 348
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.51 E-value=8.4e-05 Score=66.94 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHc-CC-ceEEEeccc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GH-KPLLLEARD 90 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~-g~-~V~vlE~~~ 90 (508)
..++++|+|||||.+|++.|..+.++ |. +|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 35789999999999999999999886 54 799999665
No 349
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.00011 Score=76.63 Aligned_cols=40 Identities=38% Similarity=0.510 Sum_probs=37.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGA 95 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~ 95 (508)
.-++|+|||+|++||+||-+|-+.|+.|+|+|+.++++|.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl 1823 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL 1823 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce
Confidence 5589999999999999999999999999999999999875
No 350
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.47 E-value=0.0024 Score=63.97 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=35.3
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHc-CCceEEEeccccC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL 92 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~-g~~V~vlE~~~~~ 92 (508)
....+|.||||||-||...|.+|++. ..+|+|||++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34779999999999999999999997 6899999998766
No 351
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00021 Score=66.06 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc--CCceEEEeccccCCCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLVGAY 96 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~~g~~ 96 (508)
..+.|+|||+|+||+.+|++|.++ +..|.|+|+.+.++|.+
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 445999999999999999999995 68999999999997753
No 352
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.39 E-value=0.00098 Score=63.97 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=37.8
Q ss_pred HHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccCh
Q 010539 259 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 306 (508)
Q Consensus 259 ~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~ 306 (508)
..++.|.++++++.|++++.. +. .|++.+|+++.++++|+|||.
T Consensus 136 ~Yke~gIe~~~~t~v~~~D~~-~K---~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 136 FYKEKGIELILGTSVVKADLA-SK---TLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hHhhcCceEEEcceeEEeecc-cc---EEEeCCCceeecceEEEeecC
Confidence 446678999999999999973 33 388999999999999999998
No 353
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00028 Score=63.96 Aligned_cols=36 Identities=36% Similarity=0.442 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
...|.|||||.+|..|||+++++|..|.+.|.++.-
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 356999999999999999999999999999988644
No 354
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.18 E-value=0.0041 Score=64.09 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||||.+|+..|..|++.|.+|+|+++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 34689999999999999999999999999999775
No 355
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.09 E-value=0.0091 Score=61.59 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=47.9
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEE---cCCc--EEEccEEEEccChHH
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 308 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~i~ad~VI~A~~~~~ 308 (508)
..++..|.+.+++.|++|+.+++|++|.. ++|++++|.. .+|+ .+.|+.||+|||...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 46888898988889999999999999997 4788888775 2453 589999999998754
No 356
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.08 E-value=0.0017 Score=60.89 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcC
Q 010539 250 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 314 (508)
Q Consensus 250 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~ 314 (508)
+.|.+.-.+++++.||+++-|..|.++.......+ +.+.+|.+++.|.||+|+|-..-..|..
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~--lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLV--LKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhccceE--EEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 34444566778889999999999999987544433 7889999999999999999766555543
No 357
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.041 Score=51.86 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=78.8
Q ss_pred hhcccCccHHHHHHHcCCChhhHHHHHHHHHhhcccCCCCcchHHHHHHHHHHHhh--hccC-CeEEeecCCccccchHH
Q 010539 179 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHG-SKMAFLDGNPPERLCLP 255 (508)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~g~~~~~l~~~ 255 (508)
..+....++.+||+..++...+..-++..+ -.++..+.+...++.....++. +.+| ..+.|+--| -+.|.+.
T Consensus 217 ~~~~~e~~F~EyL~~~rltp~lqs~vl~aI----aM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG-qGELpQc 291 (547)
T KOG4405|consen 217 YVEFRERPFSEYLKTMRLTPKLQSIVLHAI----AMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG-QGELPQC 291 (547)
T ss_pred HHHhhcCcHHHHHHhcCCChhhHHHHHHHH----HhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-CCcchHH
Confidence 344557799999999988877655444433 2245555667677766666654 2333 334454443 5688888
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCC-cEEEEEEcCCcEEEccEEEEccC
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNGNVIDGDAYVFATP 305 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g-~~~~V~~~~g~~i~ad~VI~A~~ 305 (508)
+-+.+.-.|+-.-++.+|+.|..+... .+..+....|+.+.++++|++-.
T Consensus 292 FCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~ 342 (547)
T KOG4405|consen 292 FCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPS 342 (547)
T ss_pred HHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCc
Confidence 888887788888899999999875332 11122334566788888887643
No 358
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.04 E-value=0.0064 Score=57.32 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=37.2
Q ss_pred cCCEEEeCceeeEEEE------cCCCcEEEEEEcCCcEEEccEEEEccChHHHhh
Q 010539 263 LGGEVRLNSRVQKIEL------NDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 263 ~g~~i~~~~~V~~I~~------~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ 311 (508)
..+++...+.|..+.. .+++....+++.+|..+..|.+|=|-|.+...+
T Consensus 166 ~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR 220 (481)
T KOG3855|consen 166 DNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVR 220 (481)
T ss_pred CceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhh
Confidence 4688888888877765 245666678888998899999988888865443
No 359
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00071 Score=61.65 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=46.0
Q ss_pred cccchHHHHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcC---C--cEEEccEEEEccChHHHhh
Q 010539 249 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---G--NVIDGDAYVFATPVDILKL 311 (508)
Q Consensus 249 ~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~i~ad~VI~A~~~~~~~~ 311 (508)
.+.+.+.+.+.+++.|+++...+.+.+|++.+++.. .|...+ + -+-.+|.|++|+|-....+
T Consensus 237 Dqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 237 DQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred cHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchh
Confidence 467888899999999999999989999988777763 233221 2 2356899999999765443
No 360
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.92 E-value=0.0028 Score=59.97 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=34.9
Q ss_pred HHHHHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCC--cEEEccEEEEccChH
Q 010539 256 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVD 307 (508)
Q Consensus 256 l~~~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~i~ad~VI~A~~~~ 307 (508)
..+.+.+.|+++++++.|.++.. .. + .+.+.+| ++|.+-.+|.++|..
T Consensus 279 ae~~f~~~~I~~~~~t~Vk~V~~--~~-I-~~~~~~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 279 AENQFVRDGIDLDTGTMVKKVTE--KT-I-HAKTKDGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred HHHHhhhccceeecccEEEeecC--cE-E-EEEcCCCceeeecceEEEecCCCC
Confidence 44455667899999999999962 22 2 3455556 568999999999875
No 361
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.88 E-value=0.0032 Score=63.83 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHhhhcCc
Q 010539 259 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 315 (508)
Q Consensus 259 ~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~~ll~~ 315 (508)
+.+++|++++++.+|++|.. +.+. |+++.|.++.+|++|+|||...+..=+|.
T Consensus 68 wy~~~~i~L~~~~~v~~idr--~~k~--V~t~~g~~~~YDkLilATGS~pfi~PiPG 120 (793)
T COG1251 68 WYEENGITLYTGEKVIQIDR--ANKV--VTTDAGRTVSYDKLIIATGSYPFILPIPG 120 (793)
T ss_pred hHHHcCcEEEcCCeeEEecc--Ccce--EEccCCcEeecceeEEecCccccccCCCC
Confidence 44778999999999999986 3344 88899999999999999999765443443
No 362
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.88 E-value=0.01 Score=63.94 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc-C-CceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADA-G-HKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~-g-~~V~vlE~~~ 90 (508)
...+|+|||||.+|+-+|..+.+. | .+|+|+.++.
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 346899999999999999998887 5 4899998764
No 363
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.78 E-value=0.017 Score=54.59 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCCCeEEEECCChHHHHHHHHHHHcC-CceEEEeccccC
Q 010539 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (508)
Q Consensus 55 ~~~~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~~~ 92 (508)
.+..|+|.||-|++-|+.|..|...+ .+++.||+.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 35689999999999999999999984 789999998754
No 364
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.70 E-value=0.018 Score=60.59 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||||.+|+.+|..|.+.|. +|+|++++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45789999999999999999999986 699998664
No 365
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.66 E-value=0.0016 Score=57.24 Aligned_cols=52 Identities=29% Similarity=0.547 Sum_probs=40.7
Q ss_pred eEEEECCChHHHHHHHHHHHc--CCceEEEeccccC--CCCChhHHHHHHHcCCCC
Q 010539 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVL--VGAYPNIQNLFGELGIND 110 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~--~g~~~~~~~l~~~lg~~~ 110 (508)
+.+||||||||.+||-.|++. ..+|+|+-++..+ ...+..+.+.++++.+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~e 56 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKE 56 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccc
Confidence 368999999999999999986 6689999988766 345556666666666544
No 366
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.50 E-value=0.024 Score=61.53 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc-CC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADA-GH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~-g~-~V~vlE~~~ 90 (508)
...+|+|||||..|+-+|..+.+. |. +|+|++++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 357899999999999999998886 75 799998764
No 367
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.49 E-value=0.039 Score=52.27 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=34.3
Q ss_pred cCCEEEeCceeeEEEEcCCCcEEEEEEcC-----CcEEEccEEEEccChH
Q 010539 263 LGGEVRLNSRVQKIELNDDGTVKNFLLTN-----GNVIDGDAYVFATPVD 307 (508)
Q Consensus 263 ~g~~i~~~~~V~~I~~~~~g~~~~V~~~~-----g~~i~ad~VI~A~~~~ 307 (508)
..++++.+++|.+++..++|. ..+.+.. .+++..|.||+|||..
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccc
Confidence 468999999999999866664 3455432 2579999999999987
No 368
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.45 E-value=0.03 Score=56.70 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC-CceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~~~ 92 (508)
...+|+|||||..|+-+|..+.+.| .+|+++|..+..
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 4578999999999999998888886 479999876543
No 369
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.42 E-value=0.0034 Score=52.80 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=30.4
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+|.|||||..|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 370
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.36 E-value=0.0064 Score=61.38 Aligned_cols=38 Identities=37% Similarity=0.558 Sum_probs=34.7
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
..+|+|||||.+|+.+|..|++.|.+|+|+|+++.+..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 36899999999999999999999999999999887644
No 371
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.35 E-value=0.0045 Score=53.28 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998753
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.33 E-value=0.0058 Score=61.98 Aligned_cols=52 Identities=25% Similarity=0.457 Sum_probs=38.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChhHHHHHHHcCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQNLFGELGIN 109 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~~~~l~~~lg~~ 109 (508)
+..+|+|||+|.+|+++|..|+++|++|+++|+++.. ....+.+.+++.|+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~--~~~~~~~~l~~~gv~ 66 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE--RHRALAAILEALGAT 66 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh--hhHHHHHHHHHcCCE
Confidence 3468999999999999999999999999999977532 112233445555653
No 373
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.30 E-value=0.013 Score=58.64 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..++|+|||+|.+|+-.|..|++.+.+|+|+.++.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 56799999999999999999999999999998754
No 374
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.058 Score=50.56 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..++|+|||||-+.+-.|..|++-+.+|+|+=+++
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~ 176 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCc
Confidence 44599999999999999999999999999987665
No 375
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.97 E-value=0.0069 Score=52.27 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
++|.|||.|..||..|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998764
No 376
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.0081 Score=60.60 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+|+|||.|.+|+++|+.|.++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999987653
No 377
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.91 E-value=0.025 Score=57.58 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.++|+|||+|.+|.-.|..|++...+|.+.=|+.
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 56899999999999999999999989999887764
No 378
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.88 E-value=0.01 Score=49.55 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=29.5
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 60 VvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
|+|||+|..|...|++|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999876
No 379
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.79 E-value=0.012 Score=55.72 Aligned_cols=34 Identities=41% Similarity=0.454 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+|.|||+|..|.+.|..|+++|++|+++|++..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998753
No 380
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.013 Score=52.44 Aligned_cols=35 Identities=34% Similarity=0.632 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
++++|||+|-.|.+.|..|.+.|++|+++|+.+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 47999999999999999999999999999987644
No 381
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.016 Score=54.57 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
...+|.|||+|..|...|..++..|++|+++|..+.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 346799999999999999999999999999998753
No 382
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.65 E-value=0.025 Score=56.73 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||||..|+-+|..|.+.|.+|+|++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999999875
No 383
>PRK12831 putative oxidoreductase; Provisional
Probab=95.59 E-value=0.026 Score=56.76 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45799999999999999999999999999999765
No 384
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.58 E-value=0.018 Score=57.79 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=34.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
.+|+|||||.+|+..|..|++.|.+|+|+|+.+.+..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 5899999999999999999999999999999887643
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.49 E-value=0.039 Score=52.52 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=33.1
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
..++++|||+|+|-+|.+....|-..-++|+|+.-++.
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 45778999999999999999999888999999986653
No 386
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.49 E-value=0.021 Score=53.33 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.+|.|||+|..|...|..|++.|++|+++|..+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 47999999999999999999999999999988644
No 387
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.49 E-value=0.023 Score=48.41 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=30.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|+|+|.+|..||..|...|.+|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45899999999999999999999999999999764
No 388
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.36 E-value=0.027 Score=53.45 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+..+|+|||+|..|.+.|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45689999999999999999999999999998763
No 389
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.28 E-value=0.094 Score=52.02 Aligned_cols=45 Identities=31% Similarity=0.407 Sum_probs=35.7
Q ss_pred HHcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHHHh
Q 010539 261 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 310 (508)
Q Consensus 261 ~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~~~ 310 (508)
.+.++++++++.|++|.. +. +. |.+.+| .+.+|++|+|+|.....
T Consensus 64 ~~~~i~~~~~~~v~~id~-~~-~~--v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDP-EN-KV--VLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecC-CC-CE--EEECCC-cccccEEEEcCCCcccC
Confidence 356789999999999985 33 33 777788 79999999999987544
No 390
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.26 E-value=0.04 Score=55.25 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=33.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
.+|+|||+|..|+..|..|++.|.+|+|+|+.+....
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 195 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 4899999999999999999999999999999876643
No 391
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.025 Score=52.94 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.+|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999775
No 392
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.026 Score=52.91 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 393
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.16 E-value=0.023 Score=50.07 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||+|.++.-+|+.|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45899999999999999999999999999998775
No 394
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.14 E-value=0.028 Score=56.58 Aligned_cols=35 Identities=40% Similarity=0.709 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.++|+|||+|.+|+++|..|++.|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999999864
No 395
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.00 E-value=0.034 Score=52.25 Aligned_cols=35 Identities=34% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
..+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998753
No 396
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.96 E-value=0.22 Score=50.01 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCce
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKP 83 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V 83 (508)
...+|+|||+|..|+-+|..|.+.+.++
T Consensus 165 ~gk~VvVIGgGnvAlD~Ar~L~~~~~~l 192 (491)
T PLN02852 165 SSDTAVVLGQGNVALDCARILLRPTDEL 192 (491)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcccc
Confidence 3468999999999999999999875444
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.93 E-value=0.056 Score=44.04 Aligned_cols=45 Identities=29% Similarity=0.323 Sum_probs=36.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc-eEEEeccccCCCCChhHHHHHHHc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLVGAYPNIQNLFGEL 106 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~-V~vlE~~~~~~g~~~~~~~l~~~l 106 (508)
+..+|+|||+|-+|-++++.|.+.|.+ |+|+-|.. ....++.+.+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~------~ra~~l~~~~ 56 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP------ERAEALAEEF 56 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH------HHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH------HHHHHHHHHc
Confidence 568999999999999999999999987 99998763 3344555554
No 398
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.92 E-value=0.02 Score=55.30 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=44.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC-------------CceEEEeccccCCCCC-----hhHHHHHHHcCCCCc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAG-------------HKPLLLEARDVLVGAY-----PNIQNLFGELGINDR 111 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g-------------~~V~vlE~~~~~~g~~-----~~~~~l~~~lg~~~~ 111 (508)
...+|+|||||++|...|-.|++.- .+|+|+|+.+++.... ....+.++++|++..
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~ 227 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVL 227 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEE
Confidence 3458999999999999999998641 3999999999985543 345678888888654
No 399
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.79 E-value=0.051 Score=45.93 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=31.5
Q ss_pred CCCCeEEEECCCh-HHHHHHHHHHHcCCceEEEecc
Q 010539 55 SKPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 55 ~~~~dVvIIGaG~-aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
-..++|+|||+|- +|..+|.+|.++|.+|+++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3678999999995 6999999999999999999976
No 400
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.79 E-value=0.044 Score=51.72 Aligned_cols=34 Identities=32% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.++|+|||+|..|...|++|++.|.+|+++.++.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999863
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.72 E-value=0.052 Score=47.75 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
+..+|+|||||.+|...|..|.+.|.+|+|+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4468999999999999999999999999999864
No 402
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.66 E-value=0.048 Score=50.96 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+|.|||+|..|.+.|..|++.|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 5799999999999999999999999999997653
No 403
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.59 E-value=0.28 Score=52.82 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=37.5
Q ss_pred HHHHcCCEEEeCceeeEEEEcCCCcEEEEEEc--------------C-C---------------cEEEccEEEEccChHH
Q 010539 259 HIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--------------N-G---------------NVIDGDAYVFATPVDI 308 (508)
Q Consensus 259 ~l~~~g~~i~~~~~V~~I~~~~~g~~~~V~~~--------------~-g---------------~~i~ad~VI~A~~~~~ 308 (508)
.+.+.|+.|+.+....+|..+++|.+.++++. + + .++.||.||+|+|...
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~ 728 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIEN 728 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCC
Confidence 44567999999999999987666777766553 1 1 3589999999998543
No 404
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.58 E-value=0.044 Score=51.43 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998763
No 405
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.48 E-value=0.066 Score=46.99 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEec
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~ 88 (508)
+...|+|||||-.|...|..|.+.|.+|+|++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 557999999999999999999999999999975
No 406
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.47 E-value=0.048 Score=51.64 Aligned_cols=34 Identities=29% Similarity=0.611 Sum_probs=31.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
++|.|||+|..||+.|.-|++.|++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999997653
No 407
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.45 E-value=0.079 Score=56.95 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc-eEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~-V~vlE~~~ 90 (508)
...+|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 446899999999999999999999987 99999875
No 408
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.43 E-value=0.037 Score=50.33 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=32.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||||.+|..+|..+...|.+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 45789999999999999999999999999999873
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.38 E-value=0.053 Score=53.57 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=32.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
..+|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46799999999999999999999999999997654
No 410
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.37 E-value=0.055 Score=51.21 Aligned_cols=32 Identities=41% Similarity=0.504 Sum_probs=29.8
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+|+|||+|..|...|..|++.|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999853
No 411
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.34 E-value=0.038 Score=42.57 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+..+|+|||||-.|..-+..|.+.|.+|+|+....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 56789999999999999999999999999998764
No 412
>PRK04148 hypothetical protein; Provisional
Probab=94.34 E-value=0.048 Score=43.73 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
..++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 999999999999999999998765
No 413
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.34 E-value=0.068 Score=50.32 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-ceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~~ 91 (508)
.+|.|||+|..|...|+.|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 579999999999999999999887 8999998543
No 414
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.32 E-value=0.078 Score=44.39 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEe
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE 87 (508)
+..+|+|||||-.|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 55789999999999999999999999999994
No 415
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.29 E-value=0.061 Score=51.88 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
.+|.|||+|..|...|..|++.|++|++++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999975
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.19 E-value=0.065 Score=50.76 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEec
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~ 88 (508)
+|+|||+|..|...|..|++.|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 417
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.16 E-value=0.069 Score=50.25 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=31.0
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999875
No 418
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.15 E-value=0.069 Score=50.42 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHHcC--CceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g--~~V~vlE~~~ 90 (508)
+|.|||+|..|.++|+.|+..| .+|+++|.+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999998 4899999865
No 419
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.14 E-value=0.076 Score=46.50 Aligned_cols=35 Identities=34% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||+|..|..+|..|++.|. +++|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 55789999999999999999999999 699999763
No 420
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.12 E-value=0.06 Score=46.50 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=35.0
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
..+...|.|||||..|.-.|-..+..|++|.|++++...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA 46 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence 346688999999999999999999999999999988654
No 421
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.08 E-value=0.12 Score=52.19 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=38.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccccC-CCCChhHHHHHHHcCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVL-VGAYPNIQNLFGELGI 108 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~~~-~g~~~~~~~l~~~lg~ 108 (508)
...+|+|||||.+|+-+|..|.+.|. +|+|+++++.. ........+.+++.|+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV 326 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGV 326 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCC
Confidence 45689999999999999999999998 89999987542 2223333344445554
No 422
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.99 E-value=0.08 Score=51.34 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999764
No 423
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.94 E-value=0.077 Score=50.96 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcC-CceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~ 90 (508)
+.+|+|||+|-.|.++|+.|+++| .+|+|.+|..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 368999999999999999999998 8999999884
No 424
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.94 E-value=0.084 Score=50.15 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..+|.|||+|..|.+.|..|++.|++|+++|.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3579999999999999999999999999999765
No 425
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.16 Score=46.89 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVG 94 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g 94 (508)
=+.+|||||..+|.||-.|+-.|++|+|.=|+-.+.|
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG 235 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG 235 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc
Confidence 4689999999999999999999999999887755533
No 426
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.76 E-value=0.085 Score=44.62 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.+|.|||-|..|...|.+|.+.|++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3589999999999999999999999999999774
No 427
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.66 E-value=0.075 Score=52.12 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
.++|+|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 688999999999999999999999999999977655
No 428
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.64 E-value=0.11 Score=49.23 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+.++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34679999999999999999999999999999875
No 429
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.57 E-value=0.11 Score=52.69 Aligned_cols=37 Identities=38% Similarity=0.472 Sum_probs=33.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+..+|.|||+|..|...|..|++.|++|+++|+++..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~ 42 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA 42 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 3467999999999999999999999999999987654
No 430
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.49 E-value=0.1 Score=49.96 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.8
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.+|.|||+|..|...|..|++.|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 431
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.47 E-value=0.098 Score=52.89 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
-.+|.|||+|..|...|..|++.|++|+++|+++..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~ 40 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA 40 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 357999999999999999999999999999987654
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.42 E-value=0.089 Score=52.08 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
+|.|||.|..|+..|..|++.|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998753
No 433
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.40 E-value=0.1 Score=49.84 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 434
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.35 E-value=0.15 Score=41.75 Aligned_cols=33 Identities=36% Similarity=0.549 Sum_probs=29.7
Q ss_pred CeEEEECC-ChHHHHHHHHHHHcCC--ceEEEeccc
Q 010539 58 LKVVIAGA-GLAGLSTAKYLADAGH--KPLLLEARD 90 (508)
Q Consensus 58 ~dVvIIGa-G~aGlsaA~~L~~~g~--~V~vlE~~~ 90 (508)
.+|.|||+ |-.|.+.|+.|...+. +++|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999864 799999875
No 435
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.29 E-value=0.11 Score=52.46 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=31.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 45799999999999999999999999999997654
No 436
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.28 E-value=0.14 Score=48.64 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~~~ 92 (508)
+..+|+|||+|..|.+.|+.|+..|+ +|+|+|..+..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 34689999999999999999999996 89999987654
No 437
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.26 E-value=0.13 Score=40.57 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 60 VvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
|+|||.|-.|...|..|.+.+.+|+++|..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 799999999999999999987899999988633
No 438
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.23 E-value=0.14 Score=41.64 Aligned_cols=34 Identities=38% Similarity=0.428 Sum_probs=30.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
+.+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999998 799999664
No 439
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.19 E-value=0.14 Score=45.76 Aligned_cols=36 Identities=39% Similarity=0.689 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc---eEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHK---PLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~---V~vlE~~~~ 91 (508)
+..+|+|+|+|-+|..+|..|.+.|.+ |.|+++...
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 456899999999999999999999974 999998853
No 440
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.12 E-value=0.13 Score=51.76 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=38.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChhHHHHHHHcCCC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQNLFGELGIN 109 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~~~~l~~~lg~~ 109 (508)
...+|+|||+|.+|+.|+..+...|.+|+++|.++.. .+..+++|.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~r-------le~aeslGA~ 210 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEV-------AEQVESMGAE 210 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHcCCe
Confidence 4578999999999999999999999999999987533 4556666653
No 441
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.10 E-value=0.13 Score=47.87 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=32.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
...|.|||||..|-..|+.++..|++|+++|.++..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~ 38 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEA 38 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHH
Confidence 468999999999999999999988999999988433
No 442
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.07 E-value=0.12 Score=49.39 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+|.|||+|..|.+.|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999998754
No 443
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.04 E-value=0.16 Score=47.90 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC--ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~--~V~vlE~~~ 90 (508)
.+.+|+|||+|-.|.++|+.|+..|. +++|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45699999999999999999998876 799999765
No 444
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.04 E-value=0.13 Score=51.80 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...|+|+|+|-+|+++|..|++.|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999764
No 445
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.087 Score=48.72 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCCCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 54 ~~~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.=+-+||+|||||-+|+.||.-|+--=..|+|||=.+
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 4467899999999999999999987766899999543
No 446
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.96 E-value=0.15 Score=48.27 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=30.5
Q ss_pred CeEEEECCChHHHHHHHHHHHcCC-ceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~~ 91 (508)
.+|+|||+|..|...|+.|+..|+ +|+++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 689999999999999999999876 9999998553
No 447
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.96 E-value=0.15 Score=51.28 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+.|+|+|.|-+|+++|..|+++|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 448
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.92 E-value=0.14 Score=51.66 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..+|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3579999999999999999999999999999765
No 449
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.85 E-value=0.18 Score=44.16 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..+.|+|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999998763
No 450
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.80 E-value=0.13 Score=52.10 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.2
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+|.|||+|..|...|..|++.|++|+|+|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998653
No 451
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.75 E-value=0.15 Score=51.80 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.4
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
...|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999965
No 452
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.74 E-value=0.14 Score=54.33 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
....|.|||||..|...|+.++..|++|+++|.++..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKA 348 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 3467999999999999999999999999999988654
No 453
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.71 E-value=0.17 Score=47.06 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||+|-+|-++|+.|++.|. +|+|+++..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 44789999999999999999999997 799998864
No 454
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.68 E-value=0.16 Score=53.87 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+..+|.|||||..|...|+.++..|++|+++|.+...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~ 348 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS 348 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 4567999999999999999999999999999987644
No 455
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.60 E-value=0.27 Score=36.33 Aligned_cols=33 Identities=45% Similarity=0.578 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHHc-CCceEEEec
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~-g~~V~vlE~ 88 (508)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999999999999999998 678999988
No 456
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.54 E-value=0.15 Score=47.58 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999764
No 457
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.49 E-value=0.16 Score=51.22 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCCeEEEECCChHHHH-HHHHHHHcCCceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGls-aA~~L~~~g~~V~vlE~~~~ 91 (508)
+..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4467999999999999 59999999999999997653
No 458
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=92.44 E-value=0.25 Score=54.12 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
...+|+|||||.+|+-+|..+.+.|.+|+++.++..
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 457899999999999999999999999999998753
No 459
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.39 E-value=0.19 Score=49.13 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
....|+|+|+|..|+.+|..|...|.+|+++|..+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45789999999999999999999999999999765
No 460
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.28 E-value=0.18 Score=50.45 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=30.7
Q ss_pred CeEEEECCChHHHHHHHHHHHc--CCceEEEeccccC
Q 010539 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVL 92 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~--g~~V~vlE~~~~~ 92 (508)
++|.|||+|..|+..|..|++. |++|+.+|.+...
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~ 38 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR 38 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence 5799999999999999999998 5789999976544
No 461
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.19 E-value=0.18 Score=49.22 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+|.|||.|..|+..|..++. |++|+++|.+...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 69999999999999988875 9999999987543
No 462
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.18 E-value=0.23 Score=47.09 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC-CceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~~ 91 (508)
+..+|+|||||..|.+.|+.|+..| .+++|+|.+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 5579999999999999999999988 58999997653
No 463
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.15 E-value=0.24 Score=46.47 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+|+|||.|.+|..+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999999874
No 464
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.10 E-value=0.22 Score=47.08 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=29.8
Q ss_pred eEEEECCChHHHHHHHHHHHcC--CceEEEecccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDV 91 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g--~~V~vlE~~~~ 91 (508)
+|+|||+|-.|.++|+.|+..| .+|+|+|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999998 58999998653
No 465
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=92.06 E-value=0.2 Score=53.33 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
+...|.|||||..|...|+.++..|++|+++|.++..
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~ 370 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAG 370 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHH
Confidence 4467999999999999999999999999999987654
No 466
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.01 E-value=0.23 Score=44.32 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=28.9
Q ss_pred eEEEEC-CChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAG-AGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIG-aG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+|.||| +|..|.+.|..|++.|++|+++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999997654
No 467
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.95 E-value=0.2 Score=47.21 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEecccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~ 91 (508)
.+|.|+|+|..|...|+.|++.|.+|+++=+.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999987887776653
No 468
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.92 E-value=0.23 Score=47.39 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999998 899999764
No 469
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.92 E-value=0.24 Score=47.31 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 56789999999999999999999999 899999753
No 470
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.78 E-value=0.25 Score=46.04 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...+++|||.|-.|.+.|..|+..|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999999864
No 471
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.78 E-value=0.24 Score=49.66 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=37.1
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCChhHHHHHHHcCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAYPNIQNLFGELGI 108 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~~~~~~l~~~lg~ 108 (508)
..+|+|||+|..|+.++..+...|.+|+++|.+... .+..+.+|.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~r-------le~a~~lGa 208 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEV-------KEQVQSMGA 208 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHHHHcCC
Confidence 479999999999999999999999999999987533 445555554
No 472
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.74 E-value=0.28 Score=44.90 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||.|-.|..+|..|++.|. +++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 55789999999999999999999994 899999665
No 473
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.69 E-value=0.3 Score=42.64 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEecc
Q 010539 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 56 ~~~dVvIIGa-G~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
+..+++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999765
No 474
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.52 E-value=0.31 Score=42.84 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=31.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||.|-.|..+|..|++.|. +++|+|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 56789999999999999999999997 899998764
No 475
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.51 E-value=0.22 Score=49.97 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4679999999999999999995 9999999954
No 476
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.51 E-value=0.25 Score=49.13 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..+|+|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999764
No 477
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.46 E-value=0.34 Score=45.34 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCc-eEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~-V~vlE~~~ 90 (508)
+.+.++|+|||-+|.++|+.|++.|.+ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 456899999999999999999999986 99998764
No 478
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.46 E-value=0.32 Score=46.00 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC--ceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~--~V~vlE~~~~ 91 (508)
...+|+|||+|-.|.++|+.|+..|. +++|+|.+..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 34699999999999999999999987 7999997543
No 479
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.45 E-value=0.22 Score=46.92 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHHHcCC-ceEEEecccc
Q 010539 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (508)
Q Consensus 60 VvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~~ 91 (508)
|.|||+|..|...|+.|+..|+ +|+++|..+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 5899999999999999999877 9999998753
No 480
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.44 E-value=0.32 Score=41.56 Aligned_cols=32 Identities=41% Similarity=0.380 Sum_probs=29.1
Q ss_pred eEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999998 599999764
No 481
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.42 E-value=0.26 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.3
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEecc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~ 89 (508)
...|.|+|.|.+|+++|..|.+.|++|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999999999999999999999999965
No 482
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.33 E-value=0.35 Score=51.25 Aligned_cols=37 Identities=32% Similarity=0.228 Sum_probs=32.3
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HcCCceEEEeccccC
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVL 92 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~-~~g~~V~vlE~~~~~ 92 (508)
+...|.|||||..|...|..++ +.|++|+++|.++..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~ 340 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQG 340 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 4467999999999999999998 589999999987643
No 483
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.24 E-value=0.26 Score=50.20 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
...|.|||.|.+|+++|..|.++|++|.+.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999764
No 484
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.17 E-value=0.24 Score=40.19 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHHcCCceEEEeccccC
Q 010539 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (508)
Q Consensus 60 VvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~ 92 (508)
++|+|+|..+.+.|..++..|++|+|+|-++..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~ 33 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER 33 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc
Confidence 589999999999999999999999999987653
No 485
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.14 E-value=0.3 Score=45.95 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=28.6
Q ss_pred eEEEECCChHHHHHHHHHHHcCC--ceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~--~V~vlE~~~ 90 (508)
+|+|||+|-.|.++|+.|...+. +++|+|...
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999999876 799999754
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.12 E-value=0.34 Score=44.87 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
....++|+|+|-+|.++|+.|++.|.+|+|+.+..
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999998753
No 487
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=91.09 E-value=0.38 Score=42.61 Aligned_cols=35 Identities=40% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 56789999999999999999999998 599999764
No 488
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.09 E-value=0.33 Score=47.29 Aligned_cols=36 Identities=36% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCCCeEEEEC-CChHHHHHHHHHHHcCCceEEEeccc
Q 010539 55 SKPLKVVIAG-AGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 55 ~~~~dVvIIG-aG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+...+|+||| .|..|-+.|..|.+.|++|+++++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 3557899999 89999999999999999999999754
No 489
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.08 E-value=0.24 Score=46.52 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998774
No 490
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.04 E-value=0.35 Score=43.75 Aligned_cols=35 Identities=37% Similarity=0.528 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
+..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 45789999999999999999999997 788988664
No 491
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.92 E-value=0.42 Score=39.89 Aligned_cols=35 Identities=37% Similarity=0.369 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcC-CceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g-~~V~vlE~~~ 90 (508)
+..+|+|||+|..|.+.|..|++.| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4578999999999999999999985 7899998764
No 492
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=90.90 E-value=0.2 Score=47.11 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=36.5
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccccCCCCC
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLVGAY 96 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~~~~g~~ 96 (508)
..+.+|||||+.||..+-...+.|-+|+++|..+.+++..
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 4689999999999999999999999999999988887764
No 493
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.82 E-value=0.31 Score=51.85 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHH-HcCCceEEEecccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDV 91 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~-~~g~~V~vlE~~~~ 91 (508)
.-.+|.|||||..|...|+.++ ..|++|+++|.++.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4467999999999999999999 78999999998754
No 494
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.77 E-value=0.81 Score=43.67 Aligned_cols=43 Identities=30% Similarity=0.331 Sum_probs=35.5
Q ss_pred HcCCEEEeCceeeEEEEcCCCcEEEEEEcCCcEEEccEEEEccChHH
Q 010539 262 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 308 (508)
Q Consensus 262 ~~g~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~i~ad~VI~A~~~~~ 308 (508)
.-|+-+..+..|.+|.. ++. . |.+.||.+|.+|.+++|||...
T Consensus 269 nGGvAvl~G~kvvkid~-~d~-~--V~LnDG~~I~YdkcLIATG~~P 311 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDE-EDK-K--VILNDGTTIGYDKCLIATGVRP 311 (659)
T ss_pred cCceEEEeccceEEeec-ccC-e--EEecCCcEeehhheeeecCcCc
Confidence 34789999999999986 343 3 7889999999999999998754
No 495
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.65 E-value=0.29 Score=49.13 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 57 ~~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 3459999999999999999999999999999765
No 496
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.64 E-value=0.54 Score=47.58 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCCCCceEEecccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 010539 451 RSPVEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYV 491 (508)
Q Consensus 451 ~~~~~~l~~aG~~~~~~~~~~~~gA~~sg~~aA~~il~~l~ 491 (508)
++..++||.+||.+.+. ..+..|+..|+.||..|...|.
T Consensus 427 ~Ts~~gVfa~GD~~~g~--~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 427 QTSNPKVFAAGDMRRGQ--SLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred cCCCCCEEEccccCCCc--hhHHHHHHHHHHHHHHHHHHHh
Confidence 45568899999998753 4678899999999999999885
No 497
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.63 E-value=0.41 Score=43.47 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=31.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 56 ~~~dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 56899999999999999999999997 799998653
No 498
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.59 E-value=0.5 Score=46.10 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=32.8
Q ss_pred CCCCCeEEEECC-ChHHHHHHHHHHHcCCceEEEeccc
Q 010539 54 PSKPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 54 ~~~~~dVvIIGa-G~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
..+.++|+|.|| |..|...+..|.++|++|+.+.+..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 346678999999 9999999999999999999998753
No 499
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.54 E-value=0.35 Score=45.45 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEeccc
Q 010539 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (508)
Q Consensus 58 ~dVvIIGaG~aGlsaA~~L~~~g~~V~vlE~~~ 90 (508)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999999864
No 500
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.51 E-value=0.42 Score=39.31 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHcCC-ceEEEeccc
Q 010539 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (508)
Q Consensus 59 dVvIIGaG~aGlsaA~~L~~~g~-~V~vlE~~~ 90 (508)
+|+|||.|-.|...|..|++.|. +++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 799999764
Done!