Query 010540
Match_columns 508
No_of_seqs 421 out of 3066
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4536 CorB Putative Mg2+ and 100.0 1.2E-67 2.6E-72 521.5 25.9 351 35-478 3-376 (423)
2 TIGR03520 GldE gliding motilit 100.0 1.7E-64 3.7E-69 530.5 39.4 353 43-487 2-379 (408)
3 PRK11573 hypothetical protein; 100.0 4.1E-64 9E-69 527.6 35.9 346 46-486 2-374 (413)
4 COG1253 TlyC Hemolysins and re 100.0 2.4E-59 5.2E-64 495.5 37.8 356 39-486 7-392 (429)
5 COG4535 CorC Putative Mg2+ and 100.0 6.8E-38 1.5E-42 292.3 12.0 224 173-487 20-253 (293)
6 PRK15094 magnesium/cobalt effl 100.0 4.9E-35 1.1E-39 294.5 19.7 209 179-478 26-242 (292)
7 KOG2118 Predicted membrane pro 100.0 3.4E-33 7.3E-38 297.6 6.2 302 26-329 3-311 (498)
8 PF01595 DUF21: Domain of unkn 99.9 1E-25 2.2E-30 211.9 21.7 166 40-213 4-183 (183)
9 COG3448 CBS-domain-containing 99.7 3.7E-15 7.9E-20 144.4 19.8 136 186-329 202-353 (382)
10 TIGR01302 IMP_dehydrog inosine 99.7 1E-15 2.3E-20 163.3 16.4 141 185-338 43-191 (450)
11 TIGR00400 mgtE Mg2+ transporte 99.7 9.6E-16 2.1E-20 163.8 15.0 134 186-329 89-233 (449)
12 COG2524 Predicted transcriptio 99.6 7.5E-16 1.6E-20 146.8 9.1 108 217-329 163-272 (294)
13 PRK05567 inosine 5'-monophosph 99.5 5.9E-13 1.3E-17 143.6 16.7 149 185-349 50-204 (486)
14 COG4109 Predicted transcriptio 99.5 1.6E-13 3.5E-18 136.0 11.0 115 220-338 182-296 (432)
15 cd04603 CBS_pair_KefB_assoc Th 99.4 6.9E-12 1.5E-16 107.6 12.2 91 237-329 2-94 (111)
16 cd04641 CBS_pair_28 The CBS do 99.3 9.2E-12 2E-16 108.1 12.0 91 237-329 2-103 (120)
17 PRK10892 D-arabinose 5-phospha 99.3 4E-12 8.7E-17 130.6 11.3 104 224-329 200-307 (326)
18 cd04605 CBS_pair_MET2_assoc Th 99.3 8.3E-12 1.8E-16 106.2 11.3 91 237-329 3-93 (110)
19 PLN02274 inosine-5'-monophosph 99.3 1.7E-11 3.6E-16 132.2 15.5 126 212-348 91-220 (505)
20 cd04626 CBS_pair_13 The CBS do 99.3 9.4E-12 2E-16 106.2 10.7 91 237-329 2-95 (111)
21 cd04623 CBS_pair_10 The CBS do 99.3 1.6E-11 3.4E-16 104.6 11.5 91 237-329 2-97 (113)
22 cd04618 CBS_pair_5 The CBS dom 99.3 1.3E-11 2.7E-16 104.1 10.4 95 237-347 2-97 (98)
23 cd04630 CBS_pair_17 The CBS do 99.3 2E-11 4.4E-16 104.8 11.8 92 237-329 2-98 (114)
24 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.6E-11 3.5E-16 104.4 11.1 90 236-329 2-91 (108)
25 COG2239 MgtE Mg/Co/Ni transpor 99.3 2.1E-11 4.5E-16 128.7 14.1 116 208-329 114-234 (451)
26 cd04619 CBS_pair_6 The CBS dom 99.3 2.1E-11 4.5E-16 105.0 11.4 91 237-329 2-97 (114)
27 cd04593 CBS_pair_EriC_assoc_ba 99.3 1.9E-11 4.1E-16 105.1 11.1 91 237-329 2-96 (115)
28 cd04590 CBS_pair_CorC_HlyC_ass 99.3 1.9E-11 4.2E-16 104.1 10.9 91 237-329 2-94 (111)
29 PRK11543 gutQ D-arabinose 5-ph 99.3 1E-11 2.2E-16 127.3 10.2 103 225-329 196-301 (321)
30 cd04600 CBS_pair_HPP_assoc Thi 99.3 2.7E-11 5.8E-16 105.4 11.5 92 237-330 3-108 (124)
31 COG3620 Predicted transcriptio 99.3 9.7E-12 2.1E-16 110.7 8.5 93 224-321 63-160 (187)
32 COG4536 CorB Putative Mg2+ and 99.3 1.2E-11 2.5E-16 124.2 9.9 127 250-392 168-297 (423)
33 cd04624 CBS_pair_11 The CBS do 99.3 2.9E-11 6.3E-16 103.2 11.2 91 237-329 2-95 (112)
34 cd04642 CBS_pair_29 The CBS do 99.3 3.7E-11 8E-16 105.3 11.5 91 237-329 2-109 (126)
35 cd04631 CBS_pair_18 The CBS do 99.3 3.2E-11 6.9E-16 105.0 10.8 92 237-329 2-108 (125)
36 cd04639 CBS_pair_26 The CBS do 99.3 2.8E-11 6.2E-16 103.0 10.1 91 237-329 2-94 (111)
37 PRK07807 inosine 5-monophospha 99.3 2.9E-11 6.3E-16 129.4 12.5 118 224-349 87-204 (479)
38 cd04621 CBS_pair_8 The CBS dom 99.3 3.7E-11 8.1E-16 107.3 11.1 91 237-329 2-119 (135)
39 PRK01862 putative voltage-gate 99.3 2.5E-11 5.3E-16 134.0 11.4 103 223-329 444-550 (574)
40 cd04803 CBS_pair_15 The CBS do 99.2 6E-11 1.3E-15 102.8 11.1 91 237-329 2-105 (122)
41 cd04627 CBS_pair_14 The CBS do 99.2 4.9E-11 1.1E-15 104.0 10.5 92 237-329 2-106 (123)
42 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 8.2E-11 1.8E-15 100.0 11.6 90 237-329 2-94 (111)
43 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 5.8E-11 1.3E-15 101.3 10.6 91 237-329 2-96 (114)
44 PTZ00314 inosine-5'-monophosph 99.2 7.8E-11 1.7E-15 127.0 13.9 127 212-349 87-217 (495)
45 cd04643 CBS_pair_30 The CBS do 99.2 7.1E-11 1.5E-15 101.3 11.0 89 237-329 2-99 (116)
46 cd04599 CBS_pair_GGDEF_assoc2 99.2 9.2E-11 2E-15 98.7 11.2 88 237-329 2-89 (105)
47 cd04617 CBS_pair_4 The CBS dom 99.2 6.4E-11 1.4E-15 102.6 10.5 92 237-330 2-99 (118)
48 cd04588 CBS_pair_CAP-ED_DUF294 99.2 9.4E-11 2E-15 99.7 11.3 90 237-329 2-93 (110)
49 cd04636 CBS_pair_23 The CBS do 99.2 7E-11 1.5E-15 104.4 10.8 91 237-329 2-116 (132)
50 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 1.1E-10 2.3E-15 98.9 11.5 91 237-330 3-93 (109)
51 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1E-10 2.2E-15 99.4 11.1 90 237-329 2-94 (111)
52 PRK07107 inosine 5-monophospha 99.2 5.6E-11 1.2E-15 128.0 11.7 106 239-347 108-217 (502)
53 cd04640 CBS_pair_27 The CBS do 99.2 7.5E-11 1.6E-15 103.4 10.6 91 237-329 2-108 (126)
54 cd04635 CBS_pair_22 The CBS do 99.2 9.1E-11 2E-15 101.7 10.7 91 237-329 2-105 (122)
55 cd04607 CBS_pair_NTP_transfera 99.2 1.2E-10 2.6E-15 99.7 11.3 90 238-329 4-96 (113)
56 cd04601 CBS_pair_IMPDH This cd 99.2 1.3E-10 2.8E-15 98.5 10.9 91 237-330 3-94 (110)
57 cd04589 CBS_pair_CAP-ED_DUF294 99.2 1.5E-10 3.2E-15 98.7 11.3 90 237-329 2-95 (111)
58 cd04610 CBS_pair_ParBc_assoc T 99.2 1.7E-10 3.8E-15 97.4 11.6 88 237-329 3-90 (107)
59 cd04608 CBS_pair_PALP_assoc Th 99.2 4.6E-11 1E-15 105.0 8.2 82 237-320 3-88 (124)
60 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 2.1E-10 4.5E-15 96.8 11.9 88 237-329 2-89 (106)
61 cd04801 CBS_pair_M50_like This 99.2 7E-11 1.5E-15 101.4 9.0 107 237-347 2-113 (114)
62 cd04615 CBS_pair_2 The CBS dom 99.2 1.6E-10 3.6E-15 98.6 11.1 90 238-329 3-96 (113)
63 cd04632 CBS_pair_19 The CBS do 99.2 1.4E-10 3E-15 101.7 10.9 91 237-329 2-109 (128)
64 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.6E-10 3.5E-15 99.6 11.0 90 237-329 2-105 (122)
65 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2E-10 4.4E-15 97.8 11.1 90 237-329 2-95 (111)
66 cd04629 CBS_pair_16 The CBS do 99.2 1.2E-10 2.5E-15 99.6 9.4 91 237-329 2-98 (114)
67 cd04614 CBS_pair_1 The CBS dom 99.2 3.2E-10 6.9E-15 95.0 11.6 78 237-329 2-79 (96)
68 cd04595 CBS_pair_DHH_polyA_Pol 99.2 2.4E-10 5.2E-15 97.2 11.0 90 237-329 3-94 (110)
69 cd04602 CBS_pair_IMPDH_2 This 99.2 2.1E-10 4.6E-15 98.6 10.7 91 237-329 3-97 (114)
70 cd04594 CBS_pair_EriC_assoc_ar 99.2 3.2E-10 6.8E-15 95.9 11.6 84 240-329 5-88 (104)
71 cd04606 CBS_pair_Mg_transporte 99.2 2E-10 4.4E-15 97.8 10.4 85 241-329 2-91 (109)
72 TIGR01137 cysta_beta cystathio 99.2 1.4E-10 3.1E-15 124.4 11.6 99 217-321 328-430 (454)
73 cd04586 CBS_pair_BON_assoc Thi 99.2 1.6E-10 3.6E-15 102.4 10.1 91 237-329 3-119 (135)
74 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 2.1E-10 4.6E-15 97.9 10.2 91 237-329 3-97 (114)
75 cd04620 CBS_pair_7 The CBS dom 99.2 2.6E-10 5.7E-15 97.8 10.7 90 237-329 2-98 (115)
76 cd04637 CBS_pair_24 The CBS do 99.2 1.7E-10 3.8E-15 100.0 9.7 90 237-329 2-105 (122)
77 cd04587 CBS_pair_CAP-ED_DUF294 99.2 2.4E-10 5.3E-15 97.5 10.3 91 237-330 2-97 (113)
78 cd04638 CBS_pair_25 The CBS do 99.1 5.8E-10 1.3E-14 94.3 12.0 89 237-329 2-90 (106)
79 cd04622 CBS_pair_9 The CBS dom 99.1 5.3E-10 1.1E-14 95.4 11.7 90 237-329 2-96 (113)
80 cd04591 CBS_pair_EriC_assoc_eu 99.1 2.9E-10 6.2E-15 96.8 9.8 86 236-329 2-89 (105)
81 cd04802 CBS_pair_3 The CBS dom 99.1 6.7E-10 1.5E-14 94.7 11.4 90 237-329 2-96 (112)
82 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 4.6E-10 9.9E-15 120.2 12.5 117 224-349 86-202 (475)
83 cd04633 CBS_pair_20 The CBS do 99.1 4.9E-10 1.1E-14 96.9 10.2 90 237-329 2-105 (121)
84 cd04584 CBS_pair_ACT_assoc Thi 99.1 5.9E-10 1.3E-14 96.3 10.6 91 237-329 2-105 (121)
85 TIGR00393 kpsF KpsF/GutQ famil 99.1 2.3E-10 4.9E-15 114.1 8.9 110 226-338 155-267 (268)
86 cd04609 CBS_pair_PALP_assoc2 T 99.1 6.6E-10 1.4E-14 94.0 10.3 88 237-329 2-93 (110)
87 cd04625 CBS_pair_12 The CBS do 99.1 9.2E-10 2E-14 93.8 10.7 90 237-329 2-96 (112)
88 cd04634 CBS_pair_21 The CBS do 99.1 9.7E-10 2.1E-14 98.9 10.5 90 237-329 2-127 (143)
89 COG0517 FOG: CBS domain [Gener 99.1 1.6E-09 3.4E-14 92.9 11.3 96 229-329 2-101 (117)
90 cd02205 CBS_pair The CBS domai 99.0 1.9E-09 4.1E-14 90.6 10.9 91 237-329 2-96 (113)
91 cd04598 CBS_pair_GGDEF_assoc T 99.0 1.3E-09 2.8E-14 93.9 9.8 90 237-329 2-102 (119)
92 COG2905 Predicted signal-trans 99.0 1E-09 2.3E-14 115.5 8.1 115 225-346 148-266 (610)
93 TIGR03520 GldE gliding motilit 98.9 5.6E-09 1.2E-13 110.4 11.5 92 291-393 191-285 (408)
94 cd04592 CBS_pair_EriC_assoc_eu 98.8 1E-08 2.3E-13 91.5 8.7 94 237-332 2-119 (133)
95 PRK11573 hypothetical protein; 98.8 1.8E-08 4E-13 106.6 11.9 128 250-395 157-287 (413)
96 PRK14869 putative manganese-de 98.8 4.7E-08 1E-12 107.5 12.2 117 225-347 67-301 (546)
97 COG1253 TlyC Hemolysins and re 98.7 1.6E-07 3.5E-12 100.1 13.8 195 134-395 107-304 (429)
98 PF00571 CBS: CBS domain CBS d 98.6 6E-08 1.3E-12 72.9 5.6 37 293-329 1-37 (57)
99 COG4535 CorC Putative Mg2+ and 98.6 4E-09 8.7E-14 99.9 -1.8 128 250-396 36-166 (293)
100 cd04618 CBS_pair_5 The CBS dom 98.5 9.1E-08 2E-12 80.5 4.8 94 300-425 2-97 (98)
101 KOG1764 5'-AMP-activated prote 98.5 3.5E-07 7.5E-12 95.6 8.6 182 236-429 162-360 (381)
102 cd04801 CBS_pair_M50_like This 98.5 1.4E-07 3E-12 80.7 3.9 112 299-425 1-113 (114)
103 PF00571 CBS: CBS domain CBS d 98.5 3E-07 6.5E-12 69.0 5.3 54 228-285 1-54 (57)
104 PRK10070 glycine betaine trans 98.3 8.8E-06 1.9E-10 85.8 12.5 100 226-329 274-374 (400)
105 PRK15094 magnesium/cobalt effl 98.1 3.1E-07 6.8E-12 92.9 -1.9 124 250-391 35-161 (292)
106 TIGR01186 proV glycine betaine 98.1 2.3E-05 5E-10 81.7 11.8 86 240-329 254-339 (363)
107 KOG2550 IMP dehydrogenase/GMP 98.1 4.7E-06 1E-10 85.0 5.8 154 185-349 71-227 (503)
108 KOG1764 5'-AMP-activated prote 97.9 1.6E-05 3.4E-10 83.3 6.6 110 237-350 238-359 (381)
109 TIGR00393 kpsF KpsF/GutQ famil 97.8 1.5E-05 3.3E-10 79.3 4.6 113 291-419 155-268 (268)
110 KOG0474 Cl- channel CLC-7 and 97.8 1.5E-05 3.2E-10 85.3 3.6 122 223-349 579-746 (762)
111 TIGR00400 mgtE Mg2+ transporte 97.7 2.1E-05 4.5E-10 84.5 2.9 101 223-329 192-292 (449)
112 cd04603 CBS_pair_KefB_assoc Th 97.6 0.00013 2.8E-09 62.1 5.6 55 226-284 56-110 (111)
113 PRK14869 putative manganese-de 97.5 6.1E-05 1.3E-09 83.0 3.6 118 224-347 244-390 (546)
114 cd04597 CBS_pair_DRTGG_assoc2 97.5 0.00034 7.3E-09 60.2 6.8 55 226-284 58-112 (113)
115 cd04604 CBS_pair_KpsF_GutQ_ass 97.4 0.00029 6.4E-09 59.6 6.2 58 223-284 56-113 (114)
116 COG2524 Predicted transcriptio 97.4 0.00022 4.8E-09 69.1 5.9 90 290-463 171-262 (294)
117 cd04597 CBS_pair_DRTGG_assoc2 97.4 0.00027 5.8E-09 60.9 5.5 39 291-329 58-96 (113)
118 PRK07107 inosine 5-monophospha 97.3 0.00071 1.5E-08 73.4 9.0 100 223-327 158-260 (502)
119 cd04619 CBS_pair_6 The CBS dom 97.3 0.00037 8E-09 59.5 5.4 56 225-284 58-113 (114)
120 cd04617 CBS_pair_4 The CBS dom 97.3 0.00047 1E-08 59.2 5.4 60 224-284 56-117 (118)
121 cd04607 CBS_pair_NTP_transfera 97.2 0.00075 1.6E-08 57.2 5.6 56 225-284 57-112 (113)
122 COG3448 CBS-domain-containing 97.1 0.00031 6.7E-09 69.3 3.3 127 291-428 245-372 (382)
123 cd04585 CBS_pair_ACT_assoc2 Th 97.1 0.00077 1.7E-08 57.5 5.5 58 223-284 64-121 (122)
124 PRK07807 inosine 5-monophospha 97.1 0.0013 2.7E-08 71.1 8.1 95 226-329 148-246 (479)
125 PRK05567 inosine 5'-monophosph 97.1 0.0016 3.5E-08 70.7 8.9 109 225-338 146-257 (486)
126 cd04600 CBS_pair_HPP_assoc Thi 97.1 0.00095 2.1E-08 57.5 5.5 58 223-284 66-123 (124)
127 cd04641 CBS_pair_28 The CBS do 97.1 0.00048 1E-08 59.3 3.4 114 300-425 2-119 (120)
128 cd04610 CBS_pair_ParBc_assoc T 97.1 0.0011 2.4E-08 55.3 5.6 56 225-284 51-106 (107)
129 cd04625 CBS_pair_12 The CBS do 97.0 0.0011 2.4E-08 56.0 5.4 55 225-284 57-111 (112)
130 cd04582 CBS_pair_ABC_OpuCA_ass 97.0 0.0016 3.6E-08 54.3 6.4 54 227-284 52-105 (106)
131 cd04596 CBS_pair_DRTGG_assoc T 97.0 0.0012 2.5E-08 55.6 5.5 57 224-284 51-107 (108)
132 cd04627 CBS_pair_14 The CBS do 97.0 0.0013 2.9E-08 56.7 5.9 52 228-283 70-121 (123)
133 PRK10892 D-arabinose 5-phospha 97.0 0.00093 2E-08 68.7 5.7 58 223-285 266-323 (326)
134 cd04620 CBS_pair_7 The CBS dom 97.0 0.0014 3E-08 55.7 5.8 56 225-284 57-114 (115)
135 cd04623 CBS_pair_10 The CBS do 97.0 0.0013 2.8E-08 55.4 5.6 55 225-284 58-112 (113)
136 cd04592 CBS_pair_EriC_assoc_eu 97.0 0.00085 1.8E-08 59.7 4.6 93 300-394 2-110 (133)
137 cd04640 CBS_pair_27 The CBS do 97.0 0.00087 1.9E-08 58.3 4.5 60 224-284 62-125 (126)
138 cd04621 CBS_pair_8 The CBS dom 97.0 0.0015 3.2E-08 58.0 5.8 56 224-284 79-134 (135)
139 cd04630 CBS_pair_17 The CBS do 97.0 0.0015 3.3E-08 55.5 5.6 56 224-284 58-113 (114)
140 TIGR01303 IMP_DH_rel_1 IMP deh 96.9 0.0031 6.6E-08 68.1 8.9 95 225-327 145-243 (475)
141 cd04593 CBS_pair_EriC_assoc_ba 96.9 0.0019 4.1E-08 54.9 5.8 56 226-284 58-114 (115)
142 smart00116 CBS Domain in cysta 96.9 0.0025 5.3E-08 44.4 5.4 29 301-329 2-30 (49)
143 cd04615 CBS_pair_2 The CBS dom 96.9 0.0019 4E-08 54.6 5.6 57 224-284 56-112 (113)
144 COG0517 FOG: CBS domain [Gener 96.9 0.003 6.5E-08 53.5 6.9 54 227-283 63-117 (117)
145 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0015 3.3E-08 55.1 5.1 55 226-284 58-112 (113)
146 PLN02274 inosine-5'-monophosph 96.9 0.0032 7E-08 68.5 8.7 102 224-327 161-266 (505)
147 cd04613 CBS_pair_SpoIVFB_EriC_ 96.9 0.0021 4.5E-08 54.2 5.8 57 225-284 57-113 (114)
148 cd04622 CBS_pair_9 The CBS dom 96.9 0.002 4.3E-08 54.4 5.6 55 226-284 58-112 (113)
149 cd04606 CBS_pair_Mg_transporte 96.9 0.002 4.4E-08 54.2 5.6 57 225-285 52-108 (109)
150 cd04631 CBS_pair_18 The CBS do 96.8 0.0018 4E-08 55.7 5.3 57 224-284 68-124 (125)
151 PRK11543 gutQ D-arabinose 5-ph 96.8 0.0021 4.5E-08 65.9 6.5 58 224-285 261-318 (321)
152 cd04636 CBS_pair_23 The CBS do 96.8 0.0019 4.2E-08 56.5 5.4 56 224-284 76-131 (132)
153 cd04608 CBS_pair_PALP_assoc Th 96.8 0.0054 1.2E-07 53.5 8.2 31 299-329 2-32 (124)
154 PTZ00314 inosine-5'-monophosph 96.8 0.0041 8.9E-08 67.5 8.9 105 224-332 157-264 (495)
155 cd04633 CBS_pair_20 The CBS do 96.8 0.0016 3.4E-08 55.8 4.6 57 223-284 64-120 (121)
156 cd04594 CBS_pair_EriC_assoc_ar 96.8 0.0029 6.4E-08 52.9 5.9 54 226-284 50-103 (104)
157 cd04601 CBS_pair_IMPDH This cd 96.8 0.0028 6E-08 53.1 5.8 56 225-284 53-109 (110)
158 cd04626 CBS_pair_13 The CBS do 96.8 0.0025 5.4E-08 53.7 5.5 54 225-283 56-109 (111)
159 cd04589 CBS_pair_CAP-ED_DUF294 96.8 0.0025 5.5E-08 53.7 5.5 56 224-284 55-110 (111)
160 cd04803 CBS_pair_15 The CBS do 96.8 0.0027 5.9E-08 54.4 5.7 58 223-284 64-121 (122)
161 cd04584 CBS_pair_ACT_assoc Thi 96.8 0.0024 5.2E-08 54.5 5.3 57 223-284 64-120 (121)
162 cd04586 CBS_pair_BON_assoc Thi 96.7 0.0021 4.6E-08 56.5 4.9 57 223-284 78-134 (135)
163 cd04612 CBS_pair_SpoIVFB_EriC_ 96.7 0.0032 7E-08 52.8 5.8 55 226-284 56-110 (111)
164 cd04635 CBS_pair_22 The CBS do 96.7 0.0026 5.6E-08 54.6 5.3 57 224-284 65-121 (122)
165 cd04614 CBS_pair_1 The CBS dom 96.7 0.0038 8.2E-08 51.8 6.1 40 299-338 1-40 (96)
166 cd04583 CBS_pair_ABC_OpuCA_ass 96.7 0.0031 6.8E-08 52.7 5.6 55 226-284 54-108 (109)
167 cd04629 CBS_pair_16 The CBS do 96.7 0.0024 5.2E-08 53.9 4.9 55 225-284 59-113 (114)
168 cd04611 CBS_pair_PAS_GGDEF_DUF 96.7 0.0035 7.5E-08 52.6 5.8 57 224-284 54-110 (111)
169 cd04599 CBS_pair_GGDEF_assoc2 96.7 0.003 6.4E-08 52.5 5.3 54 225-283 50-103 (105)
170 cd04595 CBS_pair_DHH_polyA_Pol 96.7 0.0031 6.7E-08 53.0 5.4 56 224-284 54-109 (110)
171 cd04802 CBS_pair_3 The CBS dom 96.7 0.0033 7.1E-08 53.0 5.5 56 224-284 56-111 (112)
172 cd04643 CBS_pair_30 The CBS do 96.7 0.0023 5E-08 54.2 4.5 55 224-284 61-115 (116)
173 cd04639 CBS_pair_26 The CBS do 96.6 0.0034 7.3E-08 52.8 5.3 55 226-284 56-110 (111)
174 cd04602 CBS_pair_IMPDH_2 This 96.6 0.0032 7E-08 53.5 5.1 57 226-284 57-113 (114)
175 cd04637 CBS_pair_24 The CBS do 96.6 0.0036 7.8E-08 53.7 5.1 55 226-284 67-121 (122)
176 cd04800 CBS_pair_CAP-ED_DUF294 96.5 0.0041 8.9E-08 52.3 5.2 55 225-284 56-110 (111)
177 COG3620 Predicted transcriptio 96.5 0.0035 7.6E-08 56.7 4.5 37 293-329 67-103 (187)
178 cd04632 CBS_pair_19 The CBS do 96.5 0.0043 9.3E-08 53.9 5.0 58 224-284 69-127 (128)
179 PRK01862 putative voltage-gate 96.5 0.0054 1.2E-07 68.1 7.0 39 291-329 447-485 (574)
180 cd04605 CBS_pair_MET2_assoc Th 96.4 0.0089 1.9E-07 50.1 6.7 54 227-284 56-109 (110)
181 smart00116 CBS Domain in cysta 96.4 0.007 1.5E-07 41.9 5.0 46 238-285 2-47 (49)
182 TIGR01137 cysta_beta cystathio 96.4 0.0082 1.8E-07 64.6 7.9 39 291-329 335-373 (454)
183 KOG0475 Cl- channel CLC-3 and 96.4 0.013 2.8E-07 63.5 8.8 102 226-328 543-676 (696)
184 TIGR01302 IMP_dehydrog inosine 96.3 0.0026 5.6E-08 68.5 3.4 136 292-454 81-221 (450)
185 cd04642 CBS_pair_29 The CBS do 96.3 0.0083 1.8E-07 52.0 6.0 52 229-284 74-125 (126)
186 cd04588 CBS_pair_CAP-ED_DUF294 96.3 0.0075 1.6E-07 50.6 5.5 55 226-284 55-109 (110)
187 cd04624 CBS_pair_11 The CBS do 96.3 0.0081 1.7E-07 50.6 5.6 56 225-284 56-111 (112)
188 TIGR03415 ABC_choXWV_ATP choli 96.3 0.013 2.8E-07 61.6 8.1 98 216-329 264-362 (382)
189 COG2905 Predicted signal-trans 96.2 0.0084 1.8E-07 64.3 6.0 70 213-287 198-270 (610)
190 cd04591 CBS_pair_EriC_assoc_eu 96.2 0.01 2.2E-07 50.0 5.5 49 231-284 56-104 (105)
191 cd04590 CBS_pair_CorC_HlyC_ass 96.2 0.0045 9.8E-08 52.0 3.3 109 300-426 2-111 (111)
192 cd04598 CBS_pair_GGDEF_assoc T 96.0 0.011 2.3E-07 50.4 4.8 57 224-284 59-118 (119)
193 cd04634 CBS_pair_21 The CBS do 96.0 0.012 2.5E-07 52.6 5.2 55 224-283 87-141 (143)
194 COG4175 ProV ABC-type proline/ 95.9 0.018 3.8E-07 58.2 6.7 105 212-329 260-364 (386)
195 cd04638 CBS_pair_25 The CBS do 95.6 0.024 5.3E-07 47.2 5.3 53 227-284 53-105 (106)
196 cd02205 CBS_pair The CBS domai 95.5 0.039 8.5E-07 45.4 6.5 53 228-284 60-112 (113)
197 cd04609 CBS_pair_PALP_assoc2 T 95.5 0.019 4.1E-07 47.8 4.5 54 225-284 56-109 (110)
198 COG4109 Predicted transcriptio 94.4 0.063 1.4E-06 54.6 5.2 60 223-286 246-305 (432)
199 COG2239 MgtE Mg/Co/Ni transpor 94.1 0.054 1.2E-06 57.9 4.5 61 222-286 192-252 (451)
200 PF03471 CorC_HlyC: Transporte 93.1 0.038 8.2E-07 44.7 1.0 32 445-478 7-38 (81)
201 TIGR01186 proV glycine betaine 90.6 0.38 8.2E-06 50.3 5.2 56 226-286 302-357 (363)
202 KOG2550 IMP dehydrogenase/GMP 90.2 0.3 6.5E-06 50.8 3.8 100 222-327 167-269 (503)
203 PRK10070 glycine betaine trans 86.1 1.5 3.2E-05 46.5 6.2 58 225-287 336-393 (400)
204 COG1125 OpuBA ABC-type proline 74.1 9.3 0.0002 38.0 6.5 82 238-329 189-291 (309)
205 PF14163 SieB: Superinfection 56.4 48 0.001 29.9 7.4 37 208-259 78-114 (151)
206 KOG0476 Cl- channel CLC-2 and 54.8 12 0.00025 42.4 3.5 59 224-285 586-645 (931)
207 KOG0474 Cl- channel CLC-7 and 51.9 18 0.00039 40.1 4.3 54 228-285 692-745 (762)
208 TIGR03415 ABC_choXWV_ATP choli 51.3 19 0.00041 38.0 4.3 55 225-286 325-379 (382)
209 TIGR03278 methan_mark_10 putat 44.0 15 0.00033 39.0 2.3 94 310-426 293-387 (404)
210 PF03471 CorC_HlyC: Transporte 39.5 11 0.00024 30.1 0.4 44 368-411 3-48 (81)
211 PF14147 Spore_YhaL: Sporulati 38.9 27 0.00059 25.7 2.2 18 34-53 2-19 (52)
212 KOG0476 Cl- channel CLC-2 and 38.6 43 0.00094 38.1 4.7 41 291-331 588-628 (931)
213 COG1125 OpuBA ABC-type proline 37.1 48 0.001 33.2 4.3 59 224-284 247-307 (309)
214 CHL00038 psbL photosystem II p 36.9 47 0.001 22.6 2.9 22 30-52 15-36 (38)
215 PF15086 UPF0542: Uncharacteri 33.8 1.5E+02 0.0032 23.5 5.6 10 45-54 33-42 (74)
216 KOG0475 Cl- channel CLC-3 and 30.7 75 0.0016 35.4 4.9 54 227-285 640-693 (696)
217 COG4175 ProV ABC-type proline/ 30.6 59 0.0013 33.5 3.8 47 237-286 336-382 (386)
218 PF14316 DUF4381: Domain of un 30.4 2.8E+02 0.0061 24.7 8.0 15 31-45 19-33 (146)
219 PF02419 PsbL: PsbL protein; 29.8 90 0.002 21.2 3.3 22 30-52 14-35 (37)
220 PRK00753 psbL photosystem II r 28.9 64 0.0014 22.0 2.5 23 29-52 15-37 (39)
221 COG2216 KdpB High-affinity K+ 26.9 70 0.0015 35.0 3.8 33 250-284 417-449 (681)
222 PF07172 GRP: Glycine rich pro 25.2 1.1E+02 0.0023 25.7 3.9 18 40-57 11-28 (95)
223 PF15284 PAGK: Phage-encoded v 24.7 89 0.0019 23.8 2.9 24 40-63 8-31 (61)
224 PF03563 Bunya_G2: Bunyavirus 22.9 2.3E+02 0.0049 28.3 6.2 24 156-179 210-233 (285)
225 PF01595 DUF21: Domain of unkn 22.5 5.8E+02 0.012 23.0 14.8 20 160-179 124-143 (183)
226 PF14044 NETI: NETI protein 21.9 98 0.0021 23.3 2.7 29 239-268 2-35 (57)
227 PF11131 PhrC_PhrF: Rap-phr ex 20.3 86 0.0019 21.3 1.9 16 43-58 7-22 (37)
No 1
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-67 Score=521.48 Aligned_cols=351 Identities=25% Similarity=0.413 Sum_probs=310.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 010540 35 WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL 114 (508)
Q Consensus 35 ~~~~~~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~ 114 (508)
|. +++.+++|+.+||||||+|+|++++||.|++.++++|++ +|+++.+|+++|++++.|+|+|||++|++.+.+.
T Consensus 3 ~~-l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasala 77 (423)
T COG4536 3 WI-LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASALA 77 (423)
T ss_pred ch-HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence 44 346677789999999999999999999999999999994 6889999999999999999999999998765543
Q ss_pred ----HHHHHH---HHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hCCC-
Q 010540 115 ----DKLFNQ---YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHN- 183 (508)
Q Consensus 115 ----~~~~~~---~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l---~g~~- 183 (508)
-.++|. .+|..++|+++++|+|++||++|+.||++++..+++++.++.++|+|++|.++++.+.+ +|.+
T Consensus 78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~ 157 (423)
T COG4536 78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL 157 (423)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 344543 47788899999999999999999999999999999999999999999999999887764 5654
Q ss_pred ----cccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540 184 ----EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (508)
Q Consensus 184 ----~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~ 259 (508)
+...+.||+|.+++ ++++.|...+++++|+.+++++++++|.|||+||.++..++.|++.+ +.++++....
T Consensus 158 ~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~ 232 (423)
T COG4536 158 DQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP 232 (423)
T ss_pred ccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence 25678999999998 44556777788999999999999999999999999999999999988 9999999999
Q ss_pred CcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-ccccccc--cccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540 260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (508)
Q Consensus 260 ~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-~~V~dim--~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G 336 (508)
|+|+|+|+++.|+++|++|.||++++..+.+ ..-.+++ .+++.|||+.+++.+.|..|++++.|++.|||
T Consensus 233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD------- 305 (423)
T COG4536 233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD------- 305 (423)
T ss_pred CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe-------
Confidence 9999999999999999999999999876654 2233433 37899999999999999999999999999999
Q ss_pred cCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540 337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG 416 (508)
Q Consensus 337 iv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG 416 (508)
|||++.|
T Consensus 306 -------------------------------------------------------------------------EYG~i~G 312 (423)
T COG4536 306 -------------------------------------------------------------------------EYGDIQG 312 (423)
T ss_pred -------------------------------------------------------------------------ccCcEEe
Confidence 8999999
Q ss_pred eechHHHHHHHhCCccCCCCccccccce-----eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540 417 IITLEDVFEELLQEEIVDETDEYVDVHK-----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478 (508)
Q Consensus 417 IVTleDIleeivg~eI~dE~d~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 478 (508)
+||+|||+||||| ||.||||...+... ++.+||+++++|+||+|+|+.++++..|+ .|+
T Consensus 313 LVTLEDIlEEIVG-dftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a~Ti--nGL 376 (423)
T COG4536 313 LVTLEDILEEIVG-DFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPDEDARTI--NGL 376 (423)
T ss_pred eeeHHHHHHHHhc-cccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCCcchhH--HHH
Confidence 9999999999999 99999997665544 79999999999999999999998877665 666
No 2
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=1.7e-64 Score=530.54 Aligned_cols=353 Identities=25% Similarity=0.435 Sum_probs=302.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 010540 43 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLF 118 (508)
Q Consensus 43 ~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~----~~~~ 118 (508)
++|+++||||||+|+|++|+++.|+++++++|++ +|+++++++++|+++++|+++||+++|.+.+.+. ..+|
T Consensus 2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~ 77 (408)
T TIGR03520 2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF 77 (408)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999873 6788999999999999999999999988765443 2334
Q ss_pred HH--------HHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hCCCcccc
Q 010540 119 NQ--------YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALF 187 (508)
Q Consensus 119 ~~--------~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l---~g~~~~~~ 187 (508)
+. .++++++|+++++|||++||++|.+||++++.+++|++++++++++|++|+++++++++ +|.+...+
T Consensus 78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~ 157 (408)
T TIGR03520 78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI 157 (408)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 31 13455667889999999999999999999999999999999999999999999987765 46555568
Q ss_pred cHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEee
Q 010540 188 RRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267 (508)
Q Consensus 188 s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~ 267 (508)
|+|||+.+++.+ .++| ++++|+++++++++|++++|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+
T Consensus 158 t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~ 231 (408)
T TIGR03520 158 SVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK 231 (408)
T ss_pred CHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence 999999999843 3445 5899999999999999999999999999999999999998 999999999999999999
Q ss_pred CCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540 268 GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (508)
Q Consensus 268 ~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~ 347 (508)
++.|+++|+++.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+|
T Consensus 232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD------------------ 292 (408)
T TIGR03520 232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVD------------------ 292 (408)
T ss_pred CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEc------------------
Confidence 88899999999999986544333456776 47889999999999999999999999999999
Q ss_pred cccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHH
Q 010540 348 LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL 427 (508)
Q Consensus 348 ~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleei 427 (508)
|||+++||||+|||+|++
T Consensus 293 --------------------------------------------------------------E~G~~~GiVT~eDileei 310 (408)
T TIGR03520 293 --------------------------------------------------------------EYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred --------------------------------------------------------------CCCCEEEEEEHHHHHHHH
Confidence 799999999999999999
Q ss_pred hCCccCCCCccccccce-----eEEeccccChHHHhhcCCCCCC---ccccCccccCCc--ccCCCCCCC
Q 010540 428 LQEEIVDETDEYVDVHK-----RIRVAAAAAASSVARAPSSRRL---IGQKGAANQGGQ--SKQGLPPKK 487 (508)
Q Consensus 428 vg~eI~dE~d~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~--~~~~~~~~~ 487 (508)
+| ||.||+|...+..+ +|.++|.++++|+++.+|++.. +++.+..|+||| ..-|+.++.
T Consensus 311 vg-ei~de~d~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~ 379 (408)
T TIGR03520 311 VG-DISDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKK 379 (408)
T ss_pred hC-CCCCcCCcCccceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCC
Confidence 99 99999985433332 5999999999999999999842 222345566999 444554443
No 3
>PRK11573 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-64 Score=527.59 Aligned_cols=346 Identities=21% Similarity=0.345 Sum_probs=296.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHH--
Q 010540 46 VLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLFN-- 119 (508)
Q Consensus 46 llls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~----~~~~~-- 119 (508)
+++||||||+|+|++|+++.++++++++|++ +|+++++++++|+++++|+++||++++.+.+.+. ..+++
T Consensus 2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~ 77 (413)
T PRK11573 2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA 77 (413)
T ss_pred eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4689999999999999999999999999974 6788999999999999999999999987665433 23333
Q ss_pred -HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hCCCc-----ccccHH
Q 010540 120 -QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNE-----ALFRRA 190 (508)
Q Consensus 120 -~~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l---~g~~~-----~~~s~e 190 (508)
.+++++++|+++++|||++||++|.+||++++++++++++++.++++|++|+++++++.+ +|.++ ..+|++
T Consensus 78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e 157 (413)
T PRK11573 78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE 157 (413)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence 235666788899999999999999999999999999999999999999999998887754 55432 368999
Q ss_pred HHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC
Q 010540 191 QLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP 270 (508)
Q Consensus 191 EL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~ 270 (508)
||+.+++.+ . +.++++|++|++++++|++++|+|||+||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus 158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~ 230 (413)
T PRK11573 158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL 230 (413)
T ss_pred HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence 999999742 2 258999999999999999999999999999999999999998 999999999999999999989
Q ss_pred CcEEEEeEHhHHhccCCCC-c---ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540 271 KNIIGLLLVKSLLTVRPET-E---TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (508)
Q Consensus 271 d~ivGiv~~kDll~~~~~~-~---~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll 346 (508)
|+++|+++.||++....++ . ..+.++ .+++.+||+++++.++++.|++++.|+++|+|
T Consensus 231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD----------------- 292 (413)
T PRK11573 231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD----------------- 292 (413)
T ss_pred CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-----------------
Confidence 9999999999998643221 1 123343 58899999999999999999999999999999
Q ss_pred ccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHH
Q 010540 347 KLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE 426 (508)
Q Consensus 347 ~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIlee 426 (508)
|||+++||||+|||+||
T Consensus 293 ---------------------------------------------------------------EyG~~~GiVTleDilEe 309 (413)
T PRK11573 293 ---------------------------------------------------------------EYGDIQGLVTVEDILEE 309 (413)
T ss_pred ---------------------------------------------------------------cCCCeEEEeeHHHHHHH
Confidence 79999999999999999
Q ss_pred HhCCccCCCCcccc-c-cce----eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540 427 LLQEEIVDETDEYV-D-VHK----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK 486 (508)
Q Consensus 427 ivg~eI~dE~d~~~-~-~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~ 486 (508)
|+| ||.||+|... . ..+ +|+|+|.++++|+|+.+|++.++++++ |+||| ..-|+.++
T Consensus 310 ivG-ei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~~~~--Tl~G~i~~~lg~iP~ 374 (413)
T PRK11573 310 IVG-DFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDAR--TVNGVILEALEEIPV 374 (413)
T ss_pred HhC-CCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCCCCCCCCe--eHHHHHHHHhCcCCC
Confidence 999 9999998532 2 222 699999999999999999986655444 55999 44444443
No 4
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=100.00 E-value=2.4e-59 Score=495.47 Aligned_cols=356 Identities=29% Similarity=0.433 Sum_probs=303.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 010540 39 AGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDK-- 116 (508)
Q Consensus 39 ~~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~~~-- 116 (508)
++++++|+++|||||++|+|++|++|.|+++++++|+ ++|..++++.++++.+++++++|+++++...+.+...
T Consensus 7 ~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~----~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~~ 82 (429)
T COG1253 7 LLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGN----KRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPAL 82 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccC----HhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667779999999999999999999999999999977 4688899999999999999999999987655433222
Q ss_pred --HHHHHH-----H----HHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh---CC
Q 010540 117 --LFNQYV-----A----IILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GH 182 (508)
Q Consensus 117 --~~~~~~-----a----~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~---g~ 182 (508)
++.++. + +++.|+++++|||++||++|.+||++++++.++++++++++|+|++|++++++++++ |.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~ 162 (429)
T COG1253 83 AALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGV 162 (429)
T ss_pred HHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222211 1 456788899999999999999999999999999999999999999999999988764 43
Q ss_pred C---c--ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHH
Q 010540 183 N---E--ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA 257 (508)
Q Consensus 183 ~---~--~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~ 257 (508)
+ + ...+.++++ +++ ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~ 236 (429)
T COG1253 163 EPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILE 236 (429)
T ss_pred CCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHh
Confidence 3 1 345677777 665 45678999999999999999999999999999999999999999998 99999999
Q ss_pred cCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc-cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540 258 RGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (508)
Q Consensus 258 ~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~-~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G 336 (508)
++|||+|||+++.|+++|++|.||++.....++. .....-++++++||+++++.++|++|++.+.|+++|+|
T Consensus 237 ~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD------- 309 (429)
T COG1253 237 SGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVD------- 309 (429)
T ss_pred CCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-------
Confidence 9999999999888999999999999987665532 22222246999999999999999999999999999999
Q ss_pred cCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540 337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG 416 (508)
Q Consensus 337 iv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG 416 (508)
|||++.|
T Consensus 310 -------------------------------------------------------------------------EyG~~~G 316 (429)
T COG1253 310 -------------------------------------------------------------------------EYGGVEG 316 (429)
T ss_pred -------------------------------------------------------------------------cCCCeEE
Confidence 7999999
Q ss_pred eechHHHHHHHhCCccCCCCccc--cccce----eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540 417 IITLEDVFEELLQEEIVDETDEY--VDVHK----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK 486 (508)
Q Consensus 417 IVTleDIleeivg~eI~dE~d~~--~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~ 486 (508)
+||+|||+|+|+| ||.||+|+. .+.++ .|+|+|.++++|+++.+|.+. +++.+..|+||| ...|+.++
T Consensus 317 lVTleDIiEeIvG-ei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~-~~~~~~~Ti~G~v~~~lg~iP~ 392 (429)
T COG1253 317 LVTLEDIIEEIVG-EIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGIDL-DEEEDYDTIAGLVLSLLGRIPK 392 (429)
T ss_pred EeEHHHHHHHHhC-CCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCCC-cccCCcccHHHHHHHHhCcCCC
Confidence 9999999999999 999999963 23333 499999999999999999988 556567777999 44555553
No 5
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=292.26 Aligned_cols=224 Identities=26% Similarity=0.413 Sum_probs=196.3
Q ss_pred HHHhhhhhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHH
Q 010540 173 GKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAM 252 (508)
Q Consensus 173 ~~~~~~l~g~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal 252 (508)
.++++.++.. ..-+++||..++. .+++.+.++++-+.|++++++..+.+|+|||+||+++++++.+.++. +.+
T Consensus 20 e~L~~~~f~g--Epknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l 92 (293)
T COG4535 20 ERLLSQLFHG--EPKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECL 92 (293)
T ss_pred HHHHHHHhcC--CCcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHH
Confidence 3444444432 3457899999997 45677899999999999999999999999999999999999999999 999
Q ss_pred HHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc--ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEec
Q 010540 253 GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA 330 (508)
Q Consensus 253 ~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~--~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe 330 (508)
..+.++.|||+||+.++.|++.||++.|||++....+. ..+.++ +||.++||++..+..+|+.|+.++.|||+|+|
T Consensus 93 ~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViD- 170 (293)
T COG4535 93 DVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVID- 170 (293)
T ss_pred HHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEe-
Confidence 99999999999999999999999999999998765442 456674 89999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccC
Q 010540 331 KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIE 410 (508)
Q Consensus 331 ~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E 410 (508)
|
T Consensus 171 -------------------------------------------------------------------------------E 171 (293)
T COG4535 171 -------------------------------------------------------------------------------E 171 (293)
T ss_pred -------------------------------------------------------------------------------c
Confidence 7
Q ss_pred CCceEEeechHHHHHHHhCCccCCCCccccc-cce-----eEEeccccChHHHhhcCCCCCCccccCccccCCcc--cCC
Q 010540 411 DGEVIGIITLEDVFEELLQEEIVDETDEYVD-VHK-----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQS--KQG 482 (508)
Q Consensus 411 ~G~lvGIVTleDIleeivg~eI~dE~d~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~ 482 (508)
||++.|+||.|||+|+||| ||+||||++.+ .++ .|.|.|.|+++++|++||....++|.+|+ ||+. .-|
T Consensus 172 fGgVsGLVTIEDiLEqIVG-dIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTI--GGLVm~afG 248 (293)
T COG4535 172 FGGVSGLVTIEDILEQIVG-DIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTI--GGLVMQAFG 248 (293)
T ss_pred cCCeeeeEEHHHHHHHHhc-ccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhh--hHHHHHHhc
Confidence 9999999999999999999 99999997643 233 59999999999999999999999999998 9993 345
Q ss_pred CCCCC
Q 010540 483 LPPKK 487 (508)
Q Consensus 483 ~~~~~ 487 (508)
+.++.
T Consensus 249 hLP~R 253 (293)
T COG4535 249 HLPAR 253 (293)
T ss_pred cCCCC
Confidence 55543
No 6
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=100.00 E-value=4.9e-35 Score=294.49 Aligned_cols=209 Identities=28% Similarity=0.419 Sum_probs=181.5
Q ss_pred hhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHc
Q 010540 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR 258 (508)
Q Consensus 179 l~g~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~ 258 (508)
++|.++ .|++||+.+++ ++.++|.++++|+++++++|+|++.+|+++|+||.++++++.+++++ ++++.+.++
T Consensus 26 ~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~ 98 (292)
T PRK15094 26 LFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIES 98 (292)
T ss_pred HcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhc
Confidence 455443 58999999998 44567999999999999999999999999999999999999999999 999999999
Q ss_pred CCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (508)
Q Consensus 259 ~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G 336 (508)
+|+|+|||+++.++++|+++.+|++...... ...+.++| +++.+|++++++.++++.|++++.|++||+|
T Consensus 99 ~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD------- 170 (292)
T PRK15094 99 AHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVID------- 170 (292)
T ss_pred CCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-------
Confidence 9999999987778999999999998644321 23477775 6677999999999999999999999999999
Q ss_pred cCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540 337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG 416 (508)
Q Consensus 337 iv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG 416 (508)
|||+++|
T Consensus 171 -------------------------------------------------------------------------e~G~viG 177 (292)
T PRK15094 171 -------------------------------------------------------------------------EFGGVSG 177 (292)
T ss_pred -------------------------------------------------------------------------CCCCEEE
Confidence 7899999
Q ss_pred eechHHHHHHHhCCccCCCCccccc-cce-----eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540 417 IITLEDVFEELLQEEIVDETDEYVD-VHK-----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478 (508)
Q Consensus 417 IVTleDIleeivg~eI~dE~d~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 478 (508)
+||++||+|+|+| ||.||+|...+ .++ +|+|+|.++++|+|+.+|++.+.+ +..|+|||
T Consensus 178 iVTleDIle~ivG-ei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~--~~~Tl~G~ 242 (292)
T PRK15094 178 LVTIEDILELIVG-EIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDE--EVDTIGGL 242 (292)
T ss_pred EeEHHHHHHHHhC-CCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCC--CCccHHHH
Confidence 9999999999999 99999985432 122 699999999999999999986554 44556999
No 7
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=99.97 E-value=3.4e-33 Score=297.60 Aligned_cols=302 Identities=56% Similarity=0.850 Sum_probs=269.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Q 010540 26 EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKK-QAAAIFPVVQKQHQLLVTLLLCNA 104 (508)
Q Consensus 26 ~~~~~~s~~~~~~~~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~-~a~~~l~l~~~~~~ll~tlli~n~ 104 (508)
...|+...+|+.+..++++|++++++|||.+.++++++-..++.+.+.|..++++ .++++....++.+++++|++++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~ 82 (498)
T KOG2118|consen 3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS 82 (498)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence 3567777777777777888999999999999999999999999999999877665 677888899999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Q 010540 105 ASMEA-LPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN 183 (508)
Q Consensus 105 ~~~~~-~~~~~~~~~~~~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~g~~ 183 (508)
+++.+ ++.++....+.|.++.++++.++.|||++|+++|.+|+..+...+.|+.++++++++|+.||++++ ++.+|..
T Consensus 83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~ 161 (498)
T KOG2118|consen 83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN 161 (498)
T ss_pred hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence 99988 777777777778888899999999999999999999999999999999999999999999999998 8778877
Q ss_pred c-ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcE
Q 010540 184 E-ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262 (508)
Q Consensus 184 ~-~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr 262 (508)
. ....+.+++.++..+..|+.+ |.+..+|..++.+++.+.++.++++|+|..+++.++.+..+.++....+.++||||
T Consensus 162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr 240 (498)
T KOG2118|consen 162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR 240 (498)
T ss_pred cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence 5 456678999999988888766 89999999999999999999999999999999999999999878888899999999
Q ss_pred EEEeeCCCCcEEEEeEHhHHhccC----CCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 263 VPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 263 ~PV~~~~~d~ivGiv~~kDll~~~----~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+||++.+..+.+|.+....++... .....++.+.+.++...+|++++..+.++.|++.+.|++.|+.
T Consensus 241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 999998777788887777776655 3345678888889999999999999999999999999999986
No 8
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=99.94 E-value=1e-25 Score=211.87 Aligned_cols=166 Identities=27% Similarity=0.479 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 010540 40 GISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDK--- 116 (508)
Q Consensus 40 ~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~~~--- 116 (508)
+++++++++|||||++|+|++++++.+++.++++|+ ++++++.++++||+++++|++++|++++.+.+.+...
T Consensus 4 ~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~ 79 (183)
T PF01595_consen 4 LLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLAS 79 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778899999999999999999999999999987 3678899999999999999999999988776644332
Q ss_pred -HHH----HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh---CCC---cc
Q 010540 117 -LFN----QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GHN---EA 185 (508)
Q Consensus 117 -~~~----~~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~---g~~---~~ 185 (508)
+++ .+++++++++++++|||++||++|.+||++++.+.++++++++++++|+++++.++.++++ |.+ +.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~ 159 (183)
T PF01595_consen 80 NLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEEDP 159 (183)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccC
Confidence 233 2456667788889999999999999999999999999999999999999999999888653 433 25
Q ss_pred cccHHHHHHHHHHhhhhhccCCCCChhH
Q 010540 186 LFRRAQLKALVTIHSQEAGKGGELTHDE 213 (508)
Q Consensus 186 ~~s~eEL~~lv~~~~~e~~~~g~l~~~E 213 (508)
.+|+|||+.+++ +++++|.++++|
T Consensus 160 ~~s~eel~~lv~----~~~e~G~i~~~E 183 (183)
T PF01595_consen 160 AVSEEELRSLVE----EGEEEGVIEEEE 183 (183)
T ss_pred CCCHHHHHHHHH----hHHHCCCCCCCC
Confidence 789999999998 456679999876
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=3.7e-15 Score=144.38 Aligned_cols=136 Identities=15% Similarity=0.287 Sum_probs=113.9
Q ss_pred cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhh-------cCcccccccccccccceEEEeCCCCchHHHHHHHHHc
Q 010540 186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGAL-------DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR 258 (508)
Q Consensus 186 ~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl-------~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~ 258 (508)
.++.+++.+.+. +-.|--.|+.++-+.+.+-. ++.+.++.|||++ +|++++.+++++ ++.+.+.++
T Consensus 202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H 274 (382)
T COG3448 202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH 274 (382)
T ss_pred CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence 578899998886 33344567777655443332 3578999999998 999999999999 999999999
Q ss_pred CCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 259 ~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++..+||.|++ .+++|+|+.+|+.+.... ....++.+|..++.++.++++..+++..+.+.+.|..||+|
T Consensus 275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld 353 (382)
T COG3448 275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD 353 (382)
T ss_pred Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence 99999999976 789999999999862211 24579999999999999999999999999999999999999
No 10
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.67 E-value=1e-15 Score=163.31 Aligned_cols=141 Identities=14% Similarity=0.274 Sum_probs=116.6
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCCh-----hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540 185 ALFRRAQLKALVTIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (508)
Q Consensus 185 ~~~s~eEL~~lv~~~~~e~~~~g~l~~-----~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~ 259 (508)
..+|++|+..++.. .+..|.|.+ +|++++++++++++. |.+ ++++++++.++. ++++.|.+++
T Consensus 43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~ 110 (450)
T TIGR01302 43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG 110 (450)
T ss_pred CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence 46899999998873 334688884 899999999977664 554 778999999999 9999999999
Q ss_pred CcEEEEeeCCC--CcEEEEeEHhHHhccCCCCccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540 260 HSRVPVYSGNP--KNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (508)
Q Consensus 260 ~sr~PV~~~~~--d~ivGiv~~kDll~~~~~~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G 336 (508)
++++||++++. ++++|+|+.+|++... ....+++++|. .+++++++++++.++++.|++++.+.+||+|++|+++|
T Consensus 111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG 189 (450)
T TIGR01302 111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG 189 (450)
T ss_pred CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence 99999998754 6899999999998543 23467899987 48999999999999999999999999999994443333
Q ss_pred cC
Q 010540 337 LP 338 (508)
Q Consensus 337 iv 338 (508)
++
T Consensus 190 iV 191 (450)
T TIGR01302 190 LI 191 (450)
T ss_pred EE
Confidence 33
No 11
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.66 E-value=9.6e-16 Score=163.78 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=113.0
Q ss_pred cccHHHHHHHHHHhhhhhccC------CCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHH--
Q 010540 186 LFRRAQLKALVTIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA-- 257 (508)
Q Consensus 186 ~~s~eEL~~lv~~~~~e~~~~------g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~-- 257 (508)
.++.+|+..+++. ..++ +.++++|++.+++++++++.+|+++|++ ++++++++.++. ++++.+.+
T Consensus 89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~ 161 (449)
T TIGR00400 89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA 161 (449)
T ss_pred cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence 4678888888873 2222 4799999999999999999999999996 899999999999 99999875
Q ss_pred ---cCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 258 ---RGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 258 ---~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++...+||++++ ++++|+++.+|++... .+.+++++|.+++.++++++++.++++.|++++.+.+||+|
T Consensus 162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD 233 (449)
T TIGR00400 162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD 233 (449)
T ss_pred CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence 223345555554 8899999999998653 34579999988888999999999999999999999999999
No 12
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.63 E-value=7.5e-16 Score=146.78 Aligned_cols=108 Identities=17% Similarity=0.299 Sum_probs=99.8
Q ss_pred HHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--ccccc
Q 010540 217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVS 294 (508)
Q Consensus 217 i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~ 294 (508)
+.++.+..+.+|+++|++ +++++.+++|+. |+.+.+.+++++..||+++ |+++|+++..|+..+.+++ ...|+
T Consensus 163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~ 237 (294)
T COG2524 163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS 237 (294)
T ss_pred EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence 445667899999999998 999999999999 9999999999999999987 5999999999999887764 36799
Q ss_pred ccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 295 dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++|.+.+++|.+|+.+.|+++.|.+++..+++|+|
T Consensus 238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d 272 (294)
T COG2524 238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD 272 (294)
T ss_pred HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence 99999999999999999999999999999999999
No 13
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.48 E-value=5.9e-13 Score=143.64 Aligned_cols=149 Identities=20% Similarity=0.290 Sum_probs=124.1
Q ss_pred ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540 185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (508)
Q Consensus 185 ~~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~ 259 (508)
..+|++||...+. +.+..|.|. ++++++++++.+ ++++|.+ ++++++++.++. ++++.|.+++
T Consensus 50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~ 117 (486)
T PRK05567 50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG 117 (486)
T ss_pred CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence 4678999999886 334456677 477889998876 4567775 888999999999 9999999999
Q ss_pred CcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540 260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (508)
Q Consensus 260 ~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv 338 (508)
++++||++++ ++++|+++.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|+++|++
T Consensus 118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI 195 (486)
T PRK05567 118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195 (486)
T ss_pred CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence 9999999864 8999999999997543 23457899987 7889999999999999999999999999999877777877
Q ss_pred CCCCCCccccc
Q 010540 339 PMTDGKKPKLN 349 (508)
Q Consensus 339 ~~t~kDll~~i 349 (508)
|.+|+++.+
T Consensus 196 --T~~DLl~~~ 204 (486)
T PRK05567 196 --TVKDIEKAE 204 (486)
T ss_pred --EhHHhhhhh
Confidence 777776544
No 14
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.48 E-value=1.6e-13 Score=136.04 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=100.7
Q ss_pred hhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccc
Q 010540 220 ALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299 (508)
Q Consensus 220 vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~ 299 (508)
.+.-+-++|.|||+|..+..++..+++++ +..+...+.+|+||||++.. .+++|+|+.||+....+ ..++..+|.+
T Consensus 182 lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~--~t~ieKVMtk 257 (432)
T COG4109 182 LIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP--STTIEKVMTK 257 (432)
T ss_pred hhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC--CccHHHHhcc
Confidence 34446678999999999999999999998 99999999999999999976 78999999999997543 5678999999
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv 338 (508)
.+.+|.+.+++..+.+.|...+..+.||+|++....|++
T Consensus 258 np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGii 296 (432)
T COG4109 258 NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGII 296 (432)
T ss_pred CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEE
Confidence 999999999999999999999999999999544444444
No 15
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=6.9e-12 Score=107.56 Aligned_cols=91 Identities=27% Similarity=0.390 Sum_probs=79.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccccceeecCCCCHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL 314 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~~V~~~~~l~d~L 314 (508)
++.+++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....+. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence 456788999998 99999998999999999865 7899999999998643321 2568899988889999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 010540 315 NEFQKGSSHMAAVVK 329 (508)
Q Consensus 315 ~~m~~~~~~~a~VvD 329 (508)
+.|.+++.+.+||+|
T Consensus 80 ~~m~~~~~~~lpVvd 94 (111)
T cd04603 80 RIFRETEPPVVAVVD 94 (111)
T ss_pred HHHHHcCCCeEEEEc
Confidence 999999999999999
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=9.2e-12 Score=108.10 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=74.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-----cccc------ccccccceeec
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TPVS------AVSIRRIPRVP 305 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-----~~V~------dim~~~v~~V~ 305 (508)
++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|++....++. .++. ++|..++.+++
T Consensus 2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (120)
T cd04641 2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS 79 (120)
T ss_pred CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence 567899999999 99999999999999999864 88999999999986432211 1122 22345578999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 306 SDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 306 ~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~l~~~~~~m~~~~~~~l~Vvd 103 (120)
T cd04641 80 PDDCLRTIFDLIVKARVHRLVVVD 103 (120)
T ss_pred CCCcHHHHHHHHHhcCccEEEEEC
Confidence 999999999999999999999999
No 17
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=4e-12 Score=130.58 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=90.1
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIR 299 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~ 299 (508)
...+|+++|++..++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.+....+ ..++.++|.+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 6678999999645788999999999 99999998888777777754 7899999999987654322 3579999999
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~ 307 (326)
T PRK10892 278 GGIRVRPGILAVDALNLMQSRHITSVLVAD 307 (326)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence 999999999999999999999999999997
No 18
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=8.3e-12 Score=106.21 Aligned_cols=91 Identities=12% Similarity=0.258 Sum_probs=80.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++.+++++.++. ++++.+.+++++.+||++++ ++++|+++.+|++........++.++|.+++.+++++++++++++.
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 80 (110)
T cd04605 3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence 567889999998 99999999999999999865 8999999999998654443445888888889999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 010540 317 FQKGSSHMAAVVK 329 (508)
Q Consensus 317 m~~~~~~~a~VvD 329 (508)
|.+++.+.+||++
T Consensus 81 ~~~~~~~~~~Vv~ 93 (110)
T cd04605 81 MERHNISALPVVD 93 (110)
T ss_pred HHHhCCCEEeEEC
Confidence 9999999999998
No 19
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.33 E-value=1.7e-11 Score=132.18 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=100.0
Q ss_pred hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCC
Q 010540 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET 289 (508)
Q Consensus 212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~ 289 (508)
+.++.++++.+++ ..|++ +++++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+.... ..
T Consensus 91 ~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~ 161 (505)
T PLN02274 91 EQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR 161 (505)
T ss_pred HHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence 3456677776542 22665 788999999999 99999999999999999863 36899999999997543 34
Q ss_pred ccccccccccc--ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccc
Q 010540 290 ETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL 348 (508)
Q Consensus 290 ~~~V~dim~~~--v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~ 348 (508)
+.+|.++|.++ ++++++++++.++++.|.+++.+.+||+|+.|.++|++ |.+|+++.
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI--Tr~DIlk~ 220 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV--TRTDVKRV 220 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHH
Confidence 56799999866 77999999999999999999999999999655555555 55555433
No 20
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=9.4e-12 Score=106.16 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=79.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---cccccccccccceeecCCCCHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---ETPVSAVSIRRIPRVPSDMPLYDI 313 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---~~~V~dim~~~v~~V~~~~~l~d~ 313 (508)
++..++.+.+++ ++++.+.+++++++||++++ ++++|+++.+|+....... ..++.++|.+++.++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 566788999998 99999999999999999865 7899999999998654322 346888888899999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 010540 314 LNEFQKGSSHMAAVVK 329 (508)
Q Consensus 314 L~~m~~~~~~~a~VvD 329 (508)
++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (111)
T cd04626 80 LDIMREKQIGRLPVVD 95 (111)
T ss_pred HHHHHHcCCCeeeEeE
Confidence 9999999999999998
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.6e-11 Score=104.59 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=79.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----cccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~V~dim~~~v~~V~~~~~l~ 311 (508)
++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+|++...... ..++.++|.+++.++++++++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 79 (113)
T cd04623 2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD 79 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence 567788999998 99999999999999999875 7899999999998653321 2468888888899999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 010540 312 DILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvD 329 (508)
++++.|.+.+.+.+||+|
T Consensus 80 ~~l~~~~~~~~~~~~Vv~ 97 (113)
T cd04623 80 EAMALMTERRFRHLPVVD 97 (113)
T ss_pred HHHHHHHHcCCCEeEEEe
Confidence 999999999999999998
No 22
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=1.3e-11 Score=104.13 Aligned_cols=95 Identities=15% Similarity=0.311 Sum_probs=84.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
+++++++++++. ++.+.|.+++++.+||++++.++++|+++.+|+.+.. . +.++.+++++.++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-----------~--~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-----------R--LVSIHPERSLFDAALL 67 (98)
T ss_pred eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-----------e--eEEeCCCCcHHHHHHH
Confidence 678899999999 9999999999999999986447899999999998531 1 6789999999999999
Q ss_pred HHhCCCeEEEEEecC-CCccccCCCCCCCccc
Q 010540 317 FQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPK 347 (508)
Q Consensus 317 m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~ 347 (508)
|.+++.+.+||+|+. |+++|++ |.+|++.
T Consensus 68 m~~~~~~~lpVvd~~~~~~~gii--t~~d~~~ 97 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYIL--TSRRILK 97 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEe--ehhhhhc
Confidence 999999999999987 9999999 9998864
No 23
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2e-11 Score=104.83 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=79.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCcccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~v~~V~~~~~l~ 311 (508)
++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 80 (114)
T cd04630 2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK 80 (114)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence 677899999999 99999998999999999864368999999999986321 122468888888899999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 010540 312 DILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvD 329 (508)
++++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 81 YCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHHHHHHcCCCEeeEee
Confidence 999999999999999998
No 24
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=1.6e-11 Score=104.37 Aligned_cols=90 Identities=19% Similarity=0.229 Sum_probs=79.9
Q ss_pred cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHH
Q 010540 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315 (508)
Q Consensus 236 ~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~ 315 (508)
.++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++... ...++.++|..++.++++++++.++++
T Consensus 2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~ 77 (108)
T cd04596 2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH 77 (108)
T ss_pred CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence 3678899999998 99999999999999999864 7899999999998642 245688998888999999999999999
Q ss_pred HHHhCCCeEEEEEe
Q 010540 316 EFQKGSSHMAAVVK 329 (508)
Q Consensus 316 ~m~~~~~~~a~VvD 329 (508)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (108)
T cd04596 78 MMIWEGIEMLPVVD 91 (108)
T ss_pred HHHHcCCCeeeEEc
Confidence 99999999999999
No 25
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.1e-11 Score=128.67 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC-----CcEEEEeeCCCCcEEEEeEHhHH
Q 010540 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSL 282 (508)
Q Consensus 208 ~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kDl 282 (508)
.++++|++.++..+.+.+.+++.+|+. ++++++++.|+. ++++.+++.+ ...+.|+|.+ ++++|+++.+++
T Consensus 114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L 189 (451)
T COG2239 114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL 189 (451)
T ss_pred hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence 478999999999999999999999997 999999999999 9999998544 3345666765 689999999999
Q ss_pred hccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 283 l~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+... .+.+++++|.+.+++|+++++.+++.+.|++++.-.+||||
T Consensus 190 l~a~--~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 190 LTAE--PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred hcCC--cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 9653 35679999998899999999999999999999999999999
No 26
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.30 E-value=2.1e-11 Score=104.98 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=79.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCcccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~v~~V~~~~~l~ 311 (508)
.+.++++++++. ++++.+.+.++..+||++++ ++++|+++.+|+.+... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04619 2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH 79 (114)
T ss_pred ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence 456788999999 99999999999999999865 78999999999886432 123568899888999999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 010540 312 DILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvD 329 (508)
++++.|.+++.+.+||+|
T Consensus 80 ~a~~~m~~~~~~~lpVvd 97 (114)
T cd04619 80 DVWQVMKQRGLKNIPVVD 97 (114)
T ss_pred HHHHHHHHcCCCeEEEEC
Confidence 999999999999999999
No 27
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.30 E-value=1.9e-11 Score=105.07 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=78.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d 312 (508)
++..++++.++. ++++.|.+.+++++||++++ ++++|+++.+|+.....+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 79 (115)
T cd04593 2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH 79 (115)
T ss_pred CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence 455788999998 99999999999999999875 7999999999998654321 23478888888999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|.+++.+.+||+|
T Consensus 80 ~l~~~~~~~~~~~~Vvd 96 (115)
T cd04593 80 ALDRMASRGLRQLPVVD 96 (115)
T ss_pred HHHHHHHcCCceeeEEe
Confidence 99999999999999998
No 28
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.30 E-value=1.9e-11 Score=104.11 Aligned_cols=91 Identities=42% Similarity=0.631 Sum_probs=77.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc--ccccccccccceeecCCCCHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDIL 314 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~--~~V~dim~~~v~~V~~~~~l~d~L 314 (508)
++++++++.++. ++++.|.+.+++.+||++++.++++|+++.+|+......+. .++.++ ++++.++++++++.+++
T Consensus 2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 79 (111)
T cd04590 2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL 79 (111)
T ss_pred ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence 678899999999 99999998899999999764368999999999987543222 346665 46788999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 010540 315 NEFQKGSSHMAAVVK 329 (508)
Q Consensus 315 ~~m~~~~~~~a~VvD 329 (508)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04590 80 EEMRKERSHMAIVVD 94 (111)
T ss_pred HHHHhcCCcEEEEEE
Confidence 999999999999999
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.29 E-value=1e-11 Score=127.30 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=89.3
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Ccccccccccccc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRI 301 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v 301 (508)
..+|+++|++..++.++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|+.+.... ...++.++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence 468999999732388999999999 99999998888999999875 789999999998754322 2356899999999
Q ss_pred eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.++++++++.++++.|.+++...+||+|
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd 301 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVD 301 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999999999999
No 30
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2.7e-11 Score=105.36 Aligned_cols=92 Identities=18% Similarity=0.366 Sum_probs=79.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--------------cccccccccccce
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP 302 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--------------~~~V~dim~~~v~ 302 (508)
++.+++++.++. ++.+.|.+.+++++||++++ ++++|+++.+|++...... ..++.++|.+++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (124)
T cd04600 3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV 80 (124)
T ss_pred CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence 667899999998 99999999999999999875 7899999999997643321 2368888888899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEec
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVKA 330 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvDe 330 (508)
++++++++.++++.|.+++.+.+||+|+
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 108 (124)
T cd04600 81 TVRPDTPIAELVPLLADGGHHHVPVVDE 108 (124)
T ss_pred eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence 9999999999999999999999999993
No 31
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.29 E-value=9.7e-12 Score=110.75 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=81.5
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----ccccccccc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSI 298 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~V~dim~ 298 (508)
..++++.+|+. +++.+.+++++. ++++.|.++|+|.+||.++ |+++|-++..++.+...++ +..|+++|-
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~ 137 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMG 137 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhc
Confidence 45689999997 999999999999 9999999999999999987 7999999999998876443 357899999
Q ss_pred ccceeecCCCCHHHHHHHHHhCC
Q 010540 299 RRIPRVPSDMPLYDILNEFQKGS 321 (508)
Q Consensus 299 ~~v~~V~~~~~l~d~L~~m~~~~ 321 (508)
.+++.|+++.++..+-+++..+.
T Consensus 138 e~fP~Vs~~~~l~vI~~LL~~~~ 160 (187)
T COG3620 138 EPFPTVSPDESLNVISQLLEEHP 160 (187)
T ss_pred CCCCcCCCCCCHHHHHHHHhhCC
Confidence 99999999999988887776554
No 32
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.2e-11 Score=124.25 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhC-CCeEEE
Q 010540 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKG-SSHMAA 326 (508)
Q Consensus 250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~-~~~~a~ 326 (508)
|.++.+.+..++..|++..+++++.|++.++++. |+|+|+ ..+..+..+++.+++.+++.+. |.++++
T Consensus 168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~t---------V~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRipl 238 (423)
T COG4536 168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLENLT---------VSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPL 238 (423)
T ss_pred HHHHHHHHHhhcccccccccHHHHhcccccccce---------eeeeeccccceeeecCCCCHHHHHHHHhhCCCCceee
Confidence 7789999999999999887779999999988765 999997 5677899999999999999766 888888
Q ss_pred EEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhccc
Q 010540 327 VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSS 392 (508)
Q Consensus 327 VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~ 392 (508)
+.|+-++++|++ |.||+++.+.+...+.. ..+....++|||||+++++.+++.+|++++
T Consensus 239 yr~~~DnIiGvl--h~r~llr~l~e~~~~~k-----~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k 297 (423)
T COG4536 239 YRDDLDNIIGVL--HVRDLLRLLNEKNEFTK-----EDILRAADEPYFVPEGTPLSDQLVAFQRNK 297 (423)
T ss_pred ecCChhHhhhhh--hHHHHHHHhhccCcccH-----hHHHHHhcCCeecCCCCcHHHHHHHHHHhc
Confidence 889999999999 99999988876553221 145667899999999999999999999984
No 33
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=2.9e-11 Score=103.18 Aligned_cols=91 Identities=20% Similarity=0.305 Sum_probs=78.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~ 313 (508)
++..++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|++..... ...++.++|.++++++++++++.++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence 456788999998 99999999999999999876 899999999999765332 2346888888889999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 010540 314 LNEFQKGSSHMAAVVK 329 (508)
Q Consensus 314 L~~m~~~~~~~a~VvD 329 (508)
++.|.+++...+||+|
T Consensus 80 ~~~~~~~~~~~~~Vv~ 95 (112)
T cd04624 80 AKLMRKNNIRHHLVVD 95 (112)
T ss_pred HHHHHHcCccEEEEEc
Confidence 9999998889999998
No 34
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.7e-11 Score=105.33 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=76.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc----c-------------ccccccc
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET----P-------------VSAVSIR 299 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~----~-------------V~dim~~ 299 (508)
++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++....+... + ..+.|.+
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04642 2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR 79 (126)
T ss_pred CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence 567899999999 99999999999999999875 899999999999875432211 0 1234567
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++.++++++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 109 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD 109 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 888999999999999999999999999999
No 35
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.2e-11 Score=105.03 Aligned_cols=92 Identities=16% Similarity=0.276 Sum_probs=79.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---------------cccccccccccc
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------ETPVSAVSIRRI 301 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---------------~~~V~dim~~~v 301 (508)
++.+++++.++. ++++.+.+.+++.+||++++.++++|+++.+|++....+. ..++.++|.+++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 567789999998 9999999999999999986447899999999998644321 236788888889
Q ss_pred eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 108 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVD 108 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence 9999999999999999999999999998
No 36
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=2.8e-11 Score=103.05 Aligned_cols=91 Identities=29% Similarity=0.451 Sum_probs=78.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--CcccccccccccceeecCCCCHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL 314 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~~v~~V~~~~~l~d~L 314 (508)
++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+...... ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence 456788999998 99999988899999999875 789999999999864322 23478888888999999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 010540 315 NEFQKGSSHMAAVVK 329 (508)
Q Consensus 315 ~~m~~~~~~~a~VvD 329 (508)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~Vv~ 94 (111)
T cd04639 80 RLMQQGGAPAVPVVD 94 (111)
T ss_pred HHHHhcCCceeeEEc
Confidence 999999999999998
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.26 E-value=2.9e-11 Score=129.43 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=104.5
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccccccee
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR 303 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~ 303 (508)
...+++++|++ ++++++++.++. ++++.|.+++++.+||++++ ++++|+|+.+|+.... ...++.++|.+++.+
T Consensus 87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it 160 (479)
T PRK07807 87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT 160 (479)
T ss_pred hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence 45678899986 888999999999 99999999999999999865 7899999999997542 235699999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccc
Q 010540 304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (508)
Q Consensus 304 V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i 349 (508)
+++++++.++++.|.+++.+.+||+|+.|+++|++ |.+|+++..
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGII--T~~DIl~~~ 204 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL--TRTGALRAT 204 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEE--EHHHHHHHh
Confidence 99999999999999999999999999888999999 888887544
No 38
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=3.7e-11 Score=107.25 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=79.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---------------------------
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------------------- 289 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--------------------------- 289 (508)
++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|++......
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (135)
T cd04621 2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV 79 (135)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence 567789999998 99999999999999999865 8999999999998654311
Q ss_pred cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
..+++++|.+++.++++++++.++++.|.+++.+.+||++
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~ 119 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD 119 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 2468889888889999999999999999999999999998
No 39
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.25 E-value=2.5e-11 Score=134.03 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=89.9
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Cccccccccc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSI 298 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~ 298 (508)
++..+|+|+|++ +..++++++++. |+++.+.+++++.+||+|++ ++++|+++.+|+.+...+ .+.++.++|.
T Consensus 444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~ 519 (574)
T PRK01862 444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH 519 (574)
T ss_pred HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence 566799999987 667899999998 99999999999999999875 789999999999874211 2356889998
Q ss_pred ccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++.++++++++.++++.|.+++.+..||+|
T Consensus 520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd 550 (574)
T PRK01862 520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE 550 (574)
T ss_pred CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence 8999999999999999999999999999998
No 40
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=6e-11 Score=102.82 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=78.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-------------Cccccccccccccee
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------TETPVSAVSIRRIPR 303 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-------------~~~~V~dim~~~v~~ 303 (508)
++.+++++.++. ++.+.|.+.+++++||++++ ++++|+++.+|++..... ...++.++|.+++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (122)
T cd04803 2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence 456788999998 99999999999999999865 799999999999865321 234678888888999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 304 V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++++.++++.|++++.+.+||+|
T Consensus 80 v~~~~~~~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04803 80 VTPDTPLREAAEIMVENKIGCLPVVD 105 (122)
T ss_pred eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence 99999999999999999999999998
No 41
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=4.9e-11 Score=103.98 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=75.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--c-----------cccccccccccee
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--E-----------TPVSAVSIRRIPR 303 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~-----------~~V~dim~~~v~~ 303 (508)
++.+++.++++. ++++.|.+++++++||++++.++++|+++.+|+++..... . ..+.++|.+++.+
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd04627 2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS 80 (123)
T ss_pred CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence 467788999998 9999999889999999986436899999999987642211 0 0122456788889
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 304 V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++++.++++.|.+++.+.+||+|
T Consensus 81 v~~~~~l~~a~~~m~~~~~~~lpVvd 106 (123)
T cd04627 81 INGDQPLIDALHLMHNEGISSVAVVD 106 (123)
T ss_pred eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence 99999999999999999999999999
No 42
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.24 E-value=8.2e-11 Score=99.95 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=78.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI 313 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~ 313 (508)
++.+++++.++. ++++.|.+.+++.+||+++ ++++|+++.+|+.+.... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~ 78 (111)
T cd04611 2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA 78 (111)
T ss_pred CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence 566788999998 9999999889999999976 789999999999865432 2356888888889999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 010540 314 LNEFQKGSSHMAAVVK 329 (508)
Q Consensus 314 L~~m~~~~~~~a~VvD 329 (508)
++.|.+.+.+.+||+|
T Consensus 79 l~~~~~~~~~~~~Vv~ 94 (111)
T cd04611 79 RQLMREHGIRHLVVVD 94 (111)
T ss_pred HHHHHHcCCeEEEEEC
Confidence 9999999999999998
No 43
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=5.8e-11 Score=101.26 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=79.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d 312 (508)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....+. ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 79 (114)
T cd04613 2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence 456789999999 99999999999999999875 7899999999998643221 25688888888999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|++.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~Vv~ 96 (114)
T cd04613 80 ALKKFEDSDYEQLPVVD 96 (114)
T ss_pred HHHHHhhCCccEeeEEe
Confidence 99999999999999998
No 44
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.24 E-value=7.8e-11 Score=126.96 Aligned_cols=127 Identities=13% Similarity=0.209 Sum_probs=106.0
Q ss_pred hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCC
Q 010540 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET 289 (508)
Q Consensus 212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~ 289 (508)
+..+.++++.+ +++.|++ ++++++++.++. ++++.|.+++++.+||++++ .++++|+++.+|+.... ..
T Consensus 87 ~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~ 157 (495)
T PTZ00314 87 EQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK 157 (495)
T ss_pred HHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence 34556666654 4456765 678999999999 99999999999999999863 36899999999997433 33
Q ss_pred cccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccc
Q 010540 290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (508)
Q Consensus 290 ~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i 349 (508)
..++.++|.+ +++++++++++.++++.|++++.+.+||+|+.|.++|++ |.+|+++..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhcc
Confidence 4679999976 789999999999999999999999999999999999999 999887544
No 45
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=7.1e-11 Score=101.29 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=75.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---------cccccccccccceeecCC
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------ETPVSAVSIRRIPRVPSD 307 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---------~~~V~dim~~~v~~V~~~ 307 (508)
++++++.++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+..... ..++.++|.+++.+++++
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 79 (116)
T cd04643 2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD 79 (116)
T ss_pred CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence 677899999998 99999999999999999864 7899999999998754321 346888888889999999
Q ss_pred CCHHHHHHHHHhCCCeEEEEEe
Q 010540 308 MPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 308 ~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++.++++.|.+.+ .+||+|
T Consensus 80 ~~l~~a~~~~~~~~--~~~Vv~ 99 (116)
T cd04643 80 ADIEEILHLLIDQP--FLPVVD 99 (116)
T ss_pred CCHHHHHHHHhcCC--ceeEEe
Confidence 99999999998754 588988
No 46
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=9.2e-11 Score=98.74 Aligned_cols=88 Identities=11% Similarity=0.243 Sum_probs=77.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++.++++++++. ++++.|.+++++.+||+++ ++++|+++.+|+..... ..++.++|..++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL 76 (105)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence 456788999998 9999998889999999973 78999999999986532 346888888889999999999999999
Q ss_pred HHhCCCeEEEEEe
Q 010540 317 FQKGSSHMAAVVK 329 (508)
Q Consensus 317 m~~~~~~~a~VvD 329 (508)
|.+++.+.+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (105)
T cd04599 77 MEEKKIERLPVLR 89 (105)
T ss_pred HHHcCCCEeeEEE
Confidence 9999999999998
No 47
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=6.4e-11 Score=102.57 Aligned_cols=92 Identities=14% Similarity=0.246 Sum_probs=78.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Ccccccccccc--cceeecCCCCH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR--RIPRVPSDMPL 310 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~--~v~~V~~~~~l 310 (508)
++.+++++.++. ++++.|.+++.+.+||.+++ ++++|+++.+|+...... ...++.++|.+ ++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l 79 (118)
T cd04617 2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV 79 (118)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence 456889999998 99999988999999999865 789999999998865421 13457778764 68899999999
Q ss_pred HHHHHHHHhCCCeEEEEEec
Q 010540 311 YDILNEFQKGSSHMAAVVKA 330 (508)
Q Consensus 311 ~d~L~~m~~~~~~~a~VvDe 330 (508)
.++++.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~~~~lpVvd~ 99 (118)
T cd04617 80 LEAAKKLIEHQVDSLPVVEK 99 (118)
T ss_pred HHHHHHHHHcCCCEeeEEeC
Confidence 99999999999999999994
No 48
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.23 E-value=9.4e-11 Score=99.66 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=78.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccccceeecCCCCHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL 314 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~~V~~~~~l~d~L 314 (508)
+++.++.++++. ++++.|.+.+++++||+++ ++++|+++.+|+++....+ ..++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence 566788999998 9999999999999999986 7899999999998754332 2467888878889999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 010540 315 NEFQKGSSHMAAVVK 329 (508)
Q Consensus 315 ~~m~~~~~~~a~VvD 329 (508)
+.|.+.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~V~~ 93 (110)
T cd04588 79 RLMNKHNVGRLIVTD 93 (110)
T ss_pred HHHHhcCCCEEEEEC
Confidence 999999999999998
No 49
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=7e-11 Score=104.43 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=78.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---c---------------------cc
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---E---------------------TP 292 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---~---------------------~~ 292 (508)
++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+|+....... . .+
T Consensus 2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK 79 (132)
T ss_pred CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence 456789999998 99999998999999999875 7899999999998643221 1 16
Q ss_pred ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+.++|.+++.++++++++.++++.|.+.+.+.+||+|
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 116 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD 116 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence 7888888899999999999999999999999999999
No 50
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.22 E-value=1.1e-10 Score=98.88 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=79.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++..++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+..... ...++.++|.+.+.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL 79 (109)
T ss_pred CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence 566789999998 99999998999999999875 78999999999986432 2356888888889999999999999999
Q ss_pred HHhCCCeEEEEEec
Q 010540 317 FQKGSSHMAAVVKA 330 (508)
Q Consensus 317 m~~~~~~~a~VvDe 330 (508)
|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~vv~~ 93 (109)
T cd04583 80 VLKRGPKYVPVVDE 93 (109)
T ss_pred HHHcCCceeeEECC
Confidence 99999999999993
No 51
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.22 E-value=1e-10 Score=99.40 Aligned_cols=90 Identities=20% Similarity=0.301 Sum_probs=78.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc---ccccccccccceeecCCCCHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRIPRVPSDMPLYDI 313 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~---~~V~dim~~~v~~V~~~~~l~d~ 313 (508)
++..++++.++. ++++.|.+.+++++||+++ ++++|+++.+|+........ .++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 78 (111)
T cd04612 2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA 78 (111)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence 567789999998 9999999889999999986 78999999999986543322 15677888899999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 010540 314 LNEFQKGSSHMAAVVK 329 (508)
Q Consensus 314 L~~m~~~~~~~a~VvD 329 (508)
++.|++++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~V~~ 94 (111)
T cd04612 79 LKRMAERDIGRLPVVD 94 (111)
T ss_pred HHHHHhCCCCeeeEEc
Confidence 9999999999999998
No 52
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.22 E-value=5.6e-11 Score=127.95 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=92.5
Q ss_pred EEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccc--cceeecCCCCHHHHH
Q 010540 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDIL 314 (508)
Q Consensus 239 v~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~--~v~~V~~~~~l~d~L 314 (508)
.++++++++. ++++.|.+++++.+||++++ .++++|+|+.+|+.......+.+++++|.+ ++.++++++++.+++
T Consensus 108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl 186 (502)
T PRK07107 108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN 186 (502)
T ss_pred CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence 4789999999 99999999999999999862 378999999999975433345679999985 778899999999999
Q ss_pred HHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540 315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (508)
Q Consensus 315 ~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~ 347 (508)
+.|.+++.+.+||+|+.|.++|+| |.+|+++
T Consensus 187 ~lM~e~~i~~LPVVD~~g~LvGII--T~~Dilk 217 (502)
T PRK07107 187 DIIWDHKLNTLPIVDKNGNLVYLV--FRKDYDS 217 (502)
T ss_pred HHHHHcCCCEEEEEcCCCeEEEEE--EhHHHHh
Confidence 999999999999999888888888 8888875
No 53
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=7.5e-11 Score=103.44 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=73.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC----------CCCccccccccccccee--e
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----------PETETPVSAVSIRRIPR--V 304 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~----------~~~~~~V~dim~~~v~~--V 304 (508)
++.+++.++++. ++++.|.++++..+||.+++ ++++|+++.+|+.... .....++.++|.++... +
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~ 79 (126)
T cd04640 2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL 79 (126)
T ss_pred CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence 456788999998 99999988888899999865 7899999999988521 11235688888655433 3
Q ss_pred ----cCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 305 ----PSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 305 ----~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.+++++.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd 108 (126)
T cd04640 80 DLEELENASVGDVVETLKASGRQHALVVD 108 (126)
T ss_pred cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence 3789999999999999999999999
No 54
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=9.1e-11 Score=101.66 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=78.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-------------CCccccccccccccee
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR 303 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-------------~~~~~V~dim~~~v~~ 303 (508)
++.+++++.++. ++++.+.+.+++.+||++++ ++++|+++.+|++.... ....++.++|.+++..
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd04635 2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence 567889999998 99999998999999999864 89999999999985311 1234577888888899
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 304 V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 v~~~~~l~~~~~~~~~~~~~~~~Vvd 105 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVN 105 (122)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence 99999999999999999999999998
No 55
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=1.2e-10 Score=99.71 Aligned_cols=90 Identities=17% Similarity=0.154 Sum_probs=77.0
Q ss_pred eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHHH
Q 010540 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDIL 314 (508)
Q Consensus 238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~L 314 (508)
.++++.++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....+ ...++.++|..++.++++++++.+++
T Consensus 4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 45688999998 99999988899999999865 789999999998754322 23568888878888999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 010540 315 NEFQKGSSHMAAVVK 329 (508)
Q Consensus 315 ~~m~~~~~~~a~VvD 329 (508)
+.|.+++.+.+||+|
T Consensus 82 ~~~~~~~~~~~~Vv~ 96 (113)
T cd04607 82 ALMRERSIRHLPILD 96 (113)
T ss_pred HHHHHCCCCEEEEEC
Confidence 999999999999998
No 56
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.20 E-value=1.3e-10 Score=98.52 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=76.7
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecC-CCCHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS-DMPLYDILN 315 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~-~~~l~d~L~ 315 (508)
++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|+..... ...++.++|..++..+.. ++++.++++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE 79 (110)
T ss_pred CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence 567788999998 99999999999999999875 88999999999875432 345788888766666666 999999999
Q ss_pred HHHhCCCeEEEEEec
Q 010540 316 EFQKGSSHMAAVVKA 330 (508)
Q Consensus 316 ~m~~~~~~~a~VvDe 330 (508)
.|.+++.+.+||+|+
T Consensus 80 ~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 80 LLHEHKIEKLPVVDD 94 (110)
T ss_pred HHHHhCCCeeeEEcC
Confidence 999999999999993
No 57
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.20 E-value=1.5e-10 Score=98.71 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=77.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----CcccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~~V~~~~~l~d 312 (508)
+++.++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|+...... ...++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04589 2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence 456788999998 9999999999999999986 689999999999865322 235688888888999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04589 79 ALLLMTRHRIHRVVVRE 95 (111)
T ss_pred HHHHHHHhCccEEEEee
Confidence 99999999999999998
No 58
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=1.7e-10 Score=97.37 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=77.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++.+++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|++... ...++.++|..++.++++++++.++++.
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV 77 (107)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence 667889999998 9999998888889999975 7899999999998642 2346888888888899999999999999
Q ss_pred HHhCCCeEEEEEe
Q 010540 317 FQKGSSHMAAVVK 329 (508)
Q Consensus 317 m~~~~~~~a~VvD 329 (508)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vv~ 90 (107)
T cd04610 78 MFRTGISKLPVVD 90 (107)
T ss_pred HHHhCCCeEeEEC
Confidence 9999999999998
No 59
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.20 E-value=4.6e-11 Score=104.98 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=70.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC----CCCcccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~----~~~~~~V~dim~~~v~~V~~~~~l~d 312 (508)
++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++... .....++.++|.+++.++.+++++.+
T Consensus 3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence 667899999998 99999999999999999865 7899999999998532 22346899999999999999999999
Q ss_pred HHHHHHhC
Q 010540 313 ILNEFQKG 320 (508)
Q Consensus 313 ~L~~m~~~ 320 (508)
+.+.|...
T Consensus 81 v~~~~~~~ 88 (124)
T cd04608 81 LSRILETD 88 (124)
T ss_pred HHhhcccC
Confidence 99977543
No 60
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.20 E-value=2.1e-10 Score=96.82 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=76.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+..... .++.++|.+....+++++++.++++.
T Consensus 2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR 76 (106)
T ss_pred CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence 556788999998 99999988899999999765 79999999999986432 34778877777889999999999999
Q ss_pred HHhCCCeEEEEEe
Q 010540 317 FQKGSSHMAAVVK 329 (508)
Q Consensus 317 m~~~~~~~a~VvD 329 (508)
|.+++...+||+|
T Consensus 77 ~~~~~~~~~~Vv~ 89 (106)
T cd04582 77 MFAHDMSWLPCVD 89 (106)
T ss_pred HHHCCCCeeeEEC
Confidence 9999999999999
No 61
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=7e-11 Score=101.35 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=89.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcC-CcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccc--cceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIR--RIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~-~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~--~v~~V~~~~~l~ 311 (508)
++.++++++++. ++++.+.+++ ++.+||++++ ++++|+++.+|++...... ..++.++|.. ++..+++++++.
T Consensus 2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence 566789999998 9999887665 8899999865 7899999999998754322 3568888752 356899999999
Q ss_pred HHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540 312 DILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~ 347 (508)
++++.|++++.+.+||+|++|.++|++ +.+|+++
T Consensus 80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl--~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQGLDELAVVEDSGQVIGLI--TEADLLR 113 (114)
T ss_pred HHHHHHHHCCCCeeEEEcCCCcEEEEE--eccceec
Confidence 999999999999999999989999999 8888864
No 62
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=1.6e-10 Score=98.65 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=77.2
Q ss_pred eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----CcccccccccccceeecCCCCHHHH
Q 010540 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYDI 313 (508)
Q Consensus 238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~~V~~~~~l~d~ 313 (508)
...+++++++. ++++.+.+++++++||++++ ++++|+++.+|+.+.... ...++.++|.+++.++++++++.++
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 80 (113)
T cd04615 3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence 35678999998 99999999999999999865 789999999999864221 2356888888889999999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 010540 314 LNEFQKGSSHMAAVVK 329 (508)
Q Consensus 314 L~~m~~~~~~~a~VvD 329 (508)
++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~Vvd 96 (113)
T cd04615 81 RWLMSNNNISRLPVLD 96 (113)
T ss_pred HHHHHHcCCCeeeEEC
Confidence 9999999988899998
No 63
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.4e-10 Score=101.73 Aligned_cols=91 Identities=14% Similarity=0.276 Sum_probs=77.1
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----------------Ccccccccccc
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------TETPVSAVSIR 299 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----------------~~~~V~dim~~ 299 (508)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... ...++.++|.+
T Consensus 2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04632 2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence 566788999998 99999999999999999876 789999999998743211 12457888888
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++++++++.++++.|.+++.+.+||++
T Consensus 80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~ 109 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVT 109 (128)
T ss_pred CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence 899999999999999999999888888875
No 64
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.19 E-value=1.6e-10 Score=99.60 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=77.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--------------cccccccccccce
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP 302 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--------------~~~V~dim~~~v~ 302 (508)
++.+++.+.++. ++++.|.+.+++.+||+++ ++++|+++.+|+....... ..++.++|.+++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04585 2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI 78 (122)
T ss_pred CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence 456789999999 9999999999999999986 7999999999998654321 2457788888899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++++++++.++++.|++.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (122)
T cd04585 79 TVSPDASVEEAAELMLERKISGLPVVD 105 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence 999999999999999999999999998
No 65
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.18 E-value=2e-10 Score=97.75 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=77.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-C---CcccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-E---TETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-~---~~~~V~dim~~~v~~V~~~~~l~d 312 (508)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|+..... . ...++.++|.++++++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~ 78 (111)
T cd04800 2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE 78 (111)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence 567789999998 9999998889999999986 89999999999885321 1 235688888889999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|.+++.+.+||++
T Consensus 79 ~~~~~~~~~~~~~~Vv~ 95 (111)
T cd04800 79 ALLLMLERGIHHLPVVD 95 (111)
T ss_pred HHHHHHHcCCCeeeEeE
Confidence 99999999999999998
No 66
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.2e-10 Score=99.63 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=78.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC------CcccccccccccceeecCCCCH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------TETPVSAVSIRRIPRVPSDMPL 310 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~------~~~~V~dim~~~v~~V~~~~~l 310 (508)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+++...+ ...++.++|.+++.++++++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 79 (114)
T cd04629 2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI 79 (114)
T ss_pred CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence 456788999998 99999988899999999865 789999999999864321 2356888888888899999999
Q ss_pred HHHHHHHHhCCCeEEEEEe
Q 010540 311 YDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 311 ~d~L~~m~~~~~~~a~VvD 329 (508)
.++++.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~Vv~ 98 (114)
T cd04629 80 VDLAQLMLKAKPKRYPVVD 98 (114)
T ss_pred HHHHHHHHHhCCCccCEEE
Confidence 9999999999988899998
No 67
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=3.2e-10 Score=94.97 Aligned_cols=78 Identities=8% Similarity=0.175 Sum_probs=69.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.... .+.++++++++.++++.
T Consensus 2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence 567889999998 99999988999999999865 7899999999998531 16789999999999999
Q ss_pred HHhCCCeEEEEEe
Q 010540 317 FQKGSSHMAAVVK 329 (508)
Q Consensus 317 m~~~~~~~a~VvD 329 (508)
|.+++.+.+||+|
T Consensus 67 m~~~~~~~lpVv~ 79 (96)
T cd04614 67 MKRNRIEQIPIIN 79 (96)
T ss_pred HHHhCCCeeeEEC
Confidence 9999999999999
No 68
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=2.4e-10 Score=97.25 Aligned_cols=90 Identities=20% Similarity=0.354 Sum_probs=78.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--CcccccccccccceeecCCCCHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL 314 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~~v~~V~~~~~l~d~L 314 (508)
++.+++.+.++. ++.+.+.+.+++++||+++ ++++|+++.+|+...... ...++.++|.+++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 567889999998 9999998889999999986 789999999998764322 23578888888899999999999999
Q ss_pred HHHHhCCCeEEEEEe
Q 010540 315 NEFQKGSSHMAAVVK 329 (508)
Q Consensus 315 ~~m~~~~~~~a~VvD 329 (508)
+.|.+++.+.+||+|
T Consensus 80 ~~~~~~~~~~~~V~~ 94 (110)
T cd04595 80 ELMVEHDIGRVPVVE 94 (110)
T ss_pred HHHHHcCCCeeEEEe
Confidence 999999999999988
No 69
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.17 E-value=2.1e-10 Score=98.57 Aligned_cols=91 Identities=16% Similarity=0.249 Sum_probs=75.9
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccccceeecC--CCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS--DMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~--~~~l~d 312 (508)
++.+++.++++. ++++.|.+.+++.+||+++. .++++|+++.+|+..... ...+++++|.++...+.. ++++.+
T Consensus 3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~ 80 (114)
T cd04602 3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE 80 (114)
T ss_pred CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence 566788999998 99999988899999999852 378999999999875432 235588888776677755 999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|++++.+.+||+|
T Consensus 81 ~l~~~~~~~~~~~pVv~ 97 (114)
T cd04602 81 ANEILRESKKGKLPIVN 97 (114)
T ss_pred HHHHHHhcCCCceeEEC
Confidence 99999999999999998
No 70
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.17 E-value=3.2e-10 Score=95.91 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=74.5
Q ss_pred EEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHh
Q 010540 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK 319 (508)
Q Consensus 240 ~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~ 319 (508)
+++++.++. ++++.+.+.+++++||+++ ++++|+++.+|+..... .++.++|..+..+++++.++.++++.|.+
T Consensus 5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~ 78 (104)
T cd04594 5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK 78 (104)
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence 578899998 9999999999999999985 78999999999986432 34777888888999999999999999999
Q ss_pred CCCeEEEEEe
Q 010540 320 GSSHMAAVVK 329 (508)
Q Consensus 320 ~~~~~a~VvD 329 (508)
++.+.+||+|
T Consensus 79 ~~~~~~~Vv~ 88 (104)
T cd04594 79 NKTRWCPVVD 88 (104)
T ss_pred cCcceEEEEE
Confidence 9999999998
No 71
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=2e-10 Score=97.75 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=72.0
Q ss_pred EeCCCCchHHHHHHHHHcC-----CcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHH
Q 010540 241 LDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315 (508)
Q Consensus 241 v~~~~tl~~eal~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~ 315 (508)
++++.++. ++++.|.+++ +..+||++++ ++++|+++.+|++... .+.++.++|..++.++++++++.++++
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~ 77 (109)
T cd04606 2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR 77 (109)
T ss_pred ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence 46778888 9999988777 3678999765 7899999999998643 245688888788899999999999999
Q ss_pred HHHhCCCeEEEEEe
Q 010540 316 EFQKGSSHMAAVVK 329 (508)
Q Consensus 316 ~m~~~~~~~a~VvD 329 (508)
.|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~~Vv~ 91 (109)
T cd04606 78 LFEKYDLLALPVVD 91 (109)
T ss_pred HHHHcCCceeeeEC
Confidence 99999999999998
No 72
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.16 E-value=1.4e-10 Score=124.45 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=84.4
Q ss_pred HHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Cccc
Q 010540 217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETP 292 (508)
Q Consensus 217 i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~ 292 (508)
..++ |...+|+++|.+ ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++..... ...+
T Consensus 328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~ 401 (454)
T TIGR01137 328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA 401 (454)
T ss_pred HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence 4444 788999999987 788999999999 99999999999999999865 789999999999864322 2346
Q ss_pred ccccccccceeecCCCCHHHHHHHHHhCC
Q 010540 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGS 321 (508)
Q Consensus 293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~ 321 (508)
+.++|.+++.++++++++.++++.|.+++
T Consensus 402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~ 430 (454)
T TIGR01137 402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS 430 (454)
T ss_pred HHHhcCCCCeEECCcCcHHHHHHHHHHCC
Confidence 88999888889999999999999998764
No 73
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.16 E-value=1.6e-10 Score=102.44 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=78.4
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC--------------------------CCc
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--------------------------ETE 290 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~--------------------------~~~ 290 (508)
++.+++++.++. ++++.|.++++.++||++++ ++++|+++.+|+..... ...
T Consensus 3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence 667889999998 99999999999999999864 78999999999875321 123
Q ss_pred ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|
T Consensus 81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd 119 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR 119 (135)
T ss_pred CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence 467888878889999999999999999999999999998
No 74
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.16 E-value=2.1e-10 Score=97.88 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=77.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d 312 (508)
++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+++....... ..++.++|.+++.++++++++.+
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 455678899998 99999988889999999865 7899999999887654321 24688888888899999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|.+++.+.+||+|
T Consensus 81 ~~~~~~~~~~~~~~Vv~ 97 (114)
T cd04604 81 ALELMEENKITALPVVD 97 (114)
T ss_pred HHHHHHHcCCCEEEEEC
Confidence 99999999999999998
No 75
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=2.6e-10 Score=97.82 Aligned_cols=90 Identities=12% Similarity=0.307 Sum_probs=74.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcC-CcEEEEeeCCCCcEEEEeEHhHHhccCCC----CcccccccccccceeecCC--CC
Q 010540 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSD--MP 309 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~-~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~~V~~~--~~ 309 (508)
++..++.+.++. ++++.|.+++ ++.+||.++ ++++|+++.+|++....+ ...++.++|.+++.+++++ ++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~ 78 (115)
T cd04620 2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD 78 (115)
T ss_pred CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence 455788999998 9999998888 667777763 789999999999864322 1256888888888889887 78
Q ss_pred HHHHHHHHHhCCCeEEEEEe
Q 010540 310 LYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 310 l~d~L~~m~~~~~~~a~VvD 329 (508)
+.++++.|.+++.+.+||+|
T Consensus 79 l~~a~~~~~~~~~~~~pVvd 98 (115)
T cd04620 79 IFTALSLFRQHQIRHLPVLD 98 (115)
T ss_pred HHHHHHHHHHhCCceEEEEc
Confidence 99999999999999999999
No 76
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=1.7e-10 Score=100.00 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=77.5
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--------------Ccccccccccccce
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------------~~~~V~dim~~~v~ 302 (508)
++.+++++.++. ++++.+.+.+++++||+++ ++++|+++.+|+...... ...++.++|.++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd04637 2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI 78 (122)
T ss_pred CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence 567889999998 9999999999999999985 789999999999753211 12457788888899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++++++++.++++.|.+++.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~ 105 (122)
T cd04637 79 TVSPDTPVDEASKLLLENSISCLPVVD 105 (122)
T ss_pred eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence 999999999999999999999999998
No 77
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.15 E-value=2.4e-10 Score=97.47 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=76.8
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----CC-cccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ET-ETPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----~~-~~~V~dim~~~v~~V~~~~~l~ 311 (508)
++.+++++.+++ ++++.|.+++.+.+||.++ ++++|+++.+|++.... .. ..++.++|.+++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~ 78 (113)
T cd04587 2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL 78 (113)
T ss_pred CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence 566788999998 9999998889999999985 88999999999874221 11 1568888888888999999999
Q ss_pred HHHHHHHhCCCeEEEEEec
Q 010540 312 DILNEFQKGSSHMAAVVKA 330 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvDe 330 (508)
++++.|.+++.+.+||+|+
T Consensus 79 ~~~~~~~~~~~~~l~Vv~~ 97 (113)
T cd04587 79 EALHLMVQGKFRHLPVVDK 97 (113)
T ss_pred HHHHHHHHcCCCcccEECC
Confidence 9999999999988999983
No 78
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=5.8e-10 Score=94.29 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=77.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE 316 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~ 316 (508)
++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++..... ..++.++|.+++.++++++++.++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL 77 (106)
T ss_pred CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence 567888999998 99999998899999999876 78999999999985422 245777787888899999999999999
Q ss_pred HHhCCCeEEEEEe
Q 010540 317 FQKGSSHMAAVVK 329 (508)
Q Consensus 317 m~~~~~~~a~VvD 329 (508)
|.+++.+.+||+|
T Consensus 78 ~~~~~~~~~~Vvd 90 (106)
T cd04638 78 MVENNIRRVPVVD 90 (106)
T ss_pred HHHcCCCEEEEEE
Confidence 9999999999998
No 79
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=5.3e-10 Score=95.38 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=76.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc-CC---CCc-ccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV-RP---ETE-TPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~-~~---~~~-~~V~dim~~~v~~V~~~~~l~ 311 (508)
++.++++++++. ++.+.|.+.+++.+||+++ ++++|+++.+|++.. .. ... .++.++|.+.+.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (113)
T cd04622 2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence 567889999998 9999999999999999986 899999999998632 11 111 248888888889999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 010540 312 DILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvD 329 (508)
++++.|++.+.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~V~~ 96 (113)
T cd04622 79 EAARLMREHQVRRLPVVD 96 (113)
T ss_pred HHHHHHHHcCCCeeeEEC
Confidence 999999999999999998
No 80
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.13 E-value=2.9e-10 Score=96.83 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=74.4
Q ss_pred cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHH
Q 010540 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI 313 (508)
Q Consensus 236 ~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~ 313 (508)
++...++++.++. ++.+.+.+.+++++||+++. .++++|+++.+|+...... +|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~ 73 (105)
T cd04591 2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV 73 (105)
T ss_pred CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence 3677889999998 99999999889999999862 3789999999999864321 677888899999999999
Q ss_pred HHHHHhCCCeEEEEEe
Q 010540 314 LNEFQKGSSHMAAVVK 329 (508)
Q Consensus 314 L~~m~~~~~~~a~VvD 329 (508)
++.|++++.+.+||++
T Consensus 74 ~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 74 HQLFRKLGLRHLLVVD 89 (105)
T ss_pred HHHHHHcCCCEEEEEE
Confidence 9999999999999986
No 81
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.12 E-value=6.7e-10 Score=94.67 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=77.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCcccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~v~~V~~~~~l~ 311 (508)
++.++++++++. ++++.|.+++++.+||+++ ++++|+++.+|++.... ....++.++|.+++.++++++++.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04802 2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN 78 (112)
T ss_pred CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence 456788999998 9999999999999999986 48999999999986431 123468888888888999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 010540 312 DILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvD 329 (508)
++++.|.+++.+.+||+|
T Consensus 79 ~~~~~~~~~~~~~~~Vv~ 96 (112)
T cd04802 79 EAAKLMAKHGIKRLPVVD 96 (112)
T ss_pred HHHHHHHHcCCCeeEEee
Confidence 999999999999999998
No 82
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.11 E-value=4.6e-10 Score=120.17 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=103.0
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccccccee
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR 303 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~ 303 (508)
...++.++|++ +++++++++++. ++++.|.+++++.+||+++ ++++|+|+.+|+.... ...+++++|.+++++
T Consensus 86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~lit 158 (475)
T TIGR01303 86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVT 158 (475)
T ss_pred hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceE
Confidence 35678889986 778999999999 9999999999999999875 5899999999997543 235799999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccc
Q 010540 304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN 349 (508)
Q Consensus 304 V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i 349 (508)
+++++++.++++.|.+++.+.+||+|+.|+++|++ |.+|+++..
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGII--T~~DLl~~~ 202 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGIL--TRTGALRAT 202 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHHH
Confidence 99999999999999999999999999999999999 999988544
No 83
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=4.9e-10 Score=96.89 Aligned_cols=90 Identities=19% Similarity=0.326 Sum_probs=77.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--------------Ccccccccccccce
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP 302 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------------~~~~V~dim~~~v~ 302 (508)
++..+++++++. ++++.+.+.+++++||+++ ++++|+++.+|+...... ...++.++|.+++.
T Consensus 2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T cd04633 2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence 456788999998 9999998889999999985 899999999999864321 13467788888899
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++++++++.++++.|.+.+.+.+||+|
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~ 105 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVD 105 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence 999999999999999999999999999
No 84
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=5.9e-10 Score=96.25 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=78.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-------------CCccccccccccccee
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR 303 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-------------~~~~~V~dim~~~v~~ 303 (508)
++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|+..... ....++.++|..++.+
T Consensus 2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (121)
T cd04584 2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT 79 (121)
T ss_pred CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence 456788999998 99999998999999999875 89999999999875421 1225678888888999
Q ss_pred ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 304 VPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 304 V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++++++.++++.|.+++.+.+||+|
T Consensus 80 i~~~~~l~~~~~~~~~~~~~~~~V~~ 105 (121)
T cd04584 80 VHPLDTVEEAALLMREHRIGCLPVVE 105 (121)
T ss_pred ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999998
No 85
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.10 E-value=2.3e-10 Score=114.12 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=97.1
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Ccccccccccccce
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIP 302 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~ 302 (508)
.+|+++|.+. ++..+++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+...... .+.+++++|.+++.
T Consensus 155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~ 231 (268)
T TIGR00393 155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK 231 (268)
T ss_pred hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence 6899999872 277899999998 99999998999999999865 789999999999865322 24679999989999
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv 338 (508)
++++++++.++++.|.+++.+.+||+|+.|+++|++
T Consensus 232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI 267 (268)
T TIGR00393 232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267 (268)
T ss_pred EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence 999999999999999999999999999999999998
No 86
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.09 E-value=6.6e-10 Score=94.02 Aligned_cols=88 Identities=23% Similarity=0.366 Sum_probs=73.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d 312 (508)
++.+++.++++. ++++.|.+++++++||+++ ++++|+++.+|+.+..... ..++.++|.+++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 78 (110)
T cd04609 2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE 78 (110)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence 456788999998 9999999999999999986 7899999999998754321 24678888788889999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|++ +.+ +||+|
T Consensus 79 ~~~~~~~-~~~-~~vv~ 93 (110)
T cd04609 79 LSELLDR-GNV-AVVVD 93 (110)
T ss_pred HHHHHHh-CCc-eeEEe
Confidence 9999988 333 67888
No 87
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.08 E-value=9.2e-10 Score=93.82 Aligned_cols=90 Identities=14% Similarity=0.229 Sum_probs=75.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----CcccccccccccceeecCCCCHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRVPSDMPLY 311 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~dim~~~v~~V~~~~~l~ 311 (508)
++.++++++++. ++++.+.+++++.++|.+ + ++++|+++.+|+.+...+ ...++.++|..++.++++++++.
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~ 78 (112)
T cd04625 2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID 78 (112)
T ss_pred CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence 567889999998 999999888887777765 3 789999999999864321 13568888878888999999999
Q ss_pred HHHHHHHhCCCeEEEEEe
Q 010540 312 DILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 312 d~L~~m~~~~~~~a~VvD 329 (508)
++++.|.+++.+.+||+|
T Consensus 79 ~a~~~m~~~~~~~l~Vv~ 96 (112)
T cd04625 79 EVRRLMVERHLRYLPVLD 96 (112)
T ss_pred HHHHHHHHcCCCeeeEEE
Confidence 999999999999999998
No 88
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=9.7e-10 Score=98.87 Aligned_cols=90 Identities=13% Similarity=0.262 Sum_probs=77.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------------------------
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------------------- 288 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------------------------- 288 (508)
++++++++.++. ++++.|.+.+++.+||+++ ++++|+++.+|++.....
T Consensus 2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
T cd04634 2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE 78 (143)
T ss_pred CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence 567899999998 9999999999999999985 789999999998754211
Q ss_pred --------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 289 --------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 289 --------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
...++.++|.+++.++++++++.++++.|++.+.+.+||++
T Consensus 79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~ 127 (143)
T cd04634 79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE 127 (143)
T ss_pred HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12356777888899999999999999999999999999998
No 89
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.06 E-value=1.6e-09 Score=92.92 Aligned_cols=96 Identities=21% Similarity=0.354 Sum_probs=83.5
Q ss_pred ccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-c--cccccccccceeec
Q 010540 229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-T--PVSAVSIRRIPRVP 305 (508)
Q Consensus 229 ~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-~--~V~dim~~~v~~V~ 305 (508)
.++|. .+++++.++.++. ++...|.+++++.+||.++ ++++|+++.+|+..+..... . ++.++|.+++.++.
T Consensus 2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~ 76 (117)
T COG0517 2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD 76 (117)
T ss_pred ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence 34555 3888999999999 9999999999999999975 37999999999998765433 2 48899888999999
Q ss_pred CCCCHHHHHHHHHh-CCCeEEEEEe
Q 010540 306 SDMPLYDILNEFQK-GSSHMAAVVK 329 (508)
Q Consensus 306 ~~~~l~d~L~~m~~-~~~~~a~VvD 329 (508)
++.++.++++.|.+ ++.+.+||+|
T Consensus 77 ~~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 77 PDTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred CCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 99999999999999 7999999999
No 90
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.04 E-value=1.9e-09 Score=90.56 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=77.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc----ccccccccccceeecCCCCHHH
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE----TPVSAVSIRRIPRVPSDMPLYD 312 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~----~~V~dim~~~v~~V~~~~~l~d 312 (508)
++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|+........ ..+.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T cd02205 2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE 79 (113)
T ss_pred CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence 456788999998 99999998899999999875 79999999999986543221 1155677888999999999999
Q ss_pred HHHHHHhCCCeEEEEEe
Q 010540 313 ILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 313 ~L~~m~~~~~~~a~VvD 329 (508)
+++.|.+.+.+.+||+|
T Consensus 80 ~~~~~~~~~~~~~~V~~ 96 (113)
T cd02205 80 AAELMLEHGIRRLPVVD 96 (113)
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 99999999999999999
No 91
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=1.3e-09 Score=93.92 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=73.3
Q ss_pred ceEEEeCCCCchHHHHHHHHHcC-CcEEEEeeCCCCcEEEEeEHhHHhccCCC-------CcccccccccccceeecCCC
Q 010540 237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------TETPVSAVSIRRIPRVPSDM 308 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~-~sr~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~V~dim~~~v~~V~~~~ 308 (508)
++.++++++++. ++++.+.+.+ ++.+||+++ ++++|+++.+|+...... ...++.++|..++..+++++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~ 78 (119)
T cd04598 2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT 78 (119)
T ss_pred CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence 345678999998 9999998877 899999987 899999999999854322 23568899888899999999
Q ss_pred CHHHHHHHHHhCCCe---EEEEEe
Q 010540 309 PLYDILNEFQKGSSH---MAAVVK 329 (508)
Q Consensus 309 ~l~d~L~~m~~~~~~---~a~VvD 329 (508)
++.++++.|.+++.+ ..+|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~vv~ 102 (119)
T cd04598 79 PLEEVSRLATGRDSQNLYDGFIVT 102 (119)
T ss_pred CHHHHHHHHHcCCcccccccEEEe
Confidence 999999999888643 345777
No 92
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.98 E-value=1e-09 Score=115.49 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=95.5
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----CCccccccccccc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSIRR 300 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----~~~~~V~dim~~~ 300 (508)
-.+|+++|+. +.+++++.+++. ++.+.|.++|.+.+.+.+++ +...||++.+|+..... ....+|+++|+.|
T Consensus 148 ~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p 223 (610)
T COG2905 148 LTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSP 223 (610)
T ss_pred HHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhccC
Confidence 3468888886 778899999999 99999999999988888766 88999999999986532 2347899999999
Q ss_pred ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (508)
Q Consensus 301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll 346 (508)
+.+|..++.+.+|+-.|.+++++.+||.+ .|++.||+ |..|++
T Consensus 224 ~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gil--t~~dIl 266 (610)
T COG2905 224 VISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGIL--TLTDIL 266 (610)
T ss_pred ceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEe--eHHHHH
Confidence 99999999999999999999999999985 34455555 444444
No 93
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.93 E-value=5.6e-09 Score=110.42 Aligned_cols=92 Identities=11% Similarity=-0.013 Sum_probs=76.0
Q ss_pred ccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540 291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD 367 (508)
Q Consensus 291 ~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~ 367 (508)
.+|+++|++ ++.+++.+++++++++.|.+++....||+++. ++++|++ |.||++....+ +. ..+.+
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv--~~kDll~~~~~----~~-----~~l~~ 259 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVL--YIKDLLPHLNK----KN-----FDWQS 259 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEE--EHHHHHhHhcc----CC-----CCHHH
Confidence 459999984 78999999999999999999999999999764 7899999 99999864432 11 12345
Q ss_pred ccCCceeecCCCCCccchhhhhcccC
Q 010540 368 EKTESVVVDVDRPLSSGSMNRLSSSQ 393 (508)
Q Consensus 368 ~~~~~~~V~~~~~l~~~~~~~~~~~~ 393 (508)
..+++++||+++++.++++.|+.++.
T Consensus 260 ~~~~~~~Vpe~~~l~~ll~~m~~~~~ 285 (408)
T TIGR03520 260 LLREPYFVPENKKLDDLLRDFQEKKN 285 (408)
T ss_pred HcCCCeEeCCCCcHHHHHHHHHhcCc
Confidence 56789999999999999999999843
No 94
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.85 E-value=1e-08 Score=91.48 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=77.6
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc---c------------ccccc----
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---P------------VSAVS---- 297 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~---~------------V~dim---- 297 (508)
++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++++...... . +.++|
T Consensus 2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 677899999999 99999999999999999875 789999999999865432111 1 23354
Q ss_pred -----cccceeecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 010540 298 -----IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG 332 (508)
Q Consensus 298 -----~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g 332 (508)
.+++.++++++++.++++.|.+++.+.+||+|+.+
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 36788999999999999999999999999999644
No 95
>PRK11573 hypothetical protein; Provisional
Probab=98.84 E-value=1.8e-08 Score=106.58 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (508)
Q Consensus 250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~V 327 (508)
|.++.+.+.+.. .+-+++.+.+-|++..+| .+++++|+ .++.+++.+++++++++.+.+++..+.||
T Consensus 157 eEl~~lv~~~~~--~l~~~e~~mi~~vl~l~~---------~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PV 225 (413)
T PRK11573 157 EELRTIVHESRS--QISRRNQDMLLSVLDLEK---------VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVL 225 (413)
T ss_pred HHHHHHHHHHhh--hcCHHHHHHHHHHhccCC---------CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEE
Confidence 455555554433 122223344555555544 45899997 67889999999999999999887777777
Q ss_pred Eec-CCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCC
Q 010540 328 VKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS 395 (508)
Q Consensus 328 vDe-~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~ 395 (508)
+++ .++++|++ |.||++......... +...+.+..+++++||+++++.++++.|++++.|+
T Consensus 226 y~~~~D~IiGiv--~~kDll~~~~~~~~~-----~~~~l~~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~ 287 (413)
T PRK11573 226 YRDSLDDAISML--RVREAYRLMTEKKEF-----TKENMLRAADEIYFVPEGTPLSTQLVKFQRNKKKV 287 (413)
T ss_pred EcCCCCceEEEE--EHHHHHHHhhccCcC-----CHHHHHhhccCCeEeCCCCcHHHHHHHHHhcCCeE
Confidence 655 58899999 999998644321110 01123355678999999999999999999995443
No 96
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.76 E-value=4.7e-08 Score=107.50 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=97.0
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------------
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------- 288 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------------- 288 (508)
..+|+++|++ ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.....+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 3689999987 888999999999 99999999999999999875 789999999998642100
Q ss_pred --------------------------------------------------------------------------------
Q 010540 289 -------------------------------------------------------------------------------- 288 (508)
Q Consensus 289 -------------------------------------------------------------------------------- 288 (508)
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence
Q ss_pred ---------------------Cccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540 289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP 346 (508)
Q Consensus 289 ---------------------~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll 346 (508)
...+|+++|. +++.++++++++.++.+.|.+++.+.+||+|+.|+++|++ |.+|++
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGii--t~~dl~ 300 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVI--SRYHLL 300 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEE--EHHHhh
Confidence 0124667777 7788899999999999999888888889999888888888 777776
Q ss_pred c
Q 010540 347 K 347 (508)
Q Consensus 347 ~ 347 (508)
+
T Consensus 301 ~ 301 (546)
T PRK14869 301 S 301 (546)
T ss_pred c
Confidence 4
No 97
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.71 E-value=1.6e-07 Score=100.09 Aligned_cols=195 Identities=9% Similarity=0.042 Sum_probs=124.3
Q ss_pred hhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHhhhhhccCCCCChhH
Q 010540 134 FGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDE 213 (508)
Q Consensus 134 fgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~g~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E 213 (508)
+.-++..-+-...+.+.+..++.........++.+.||+.+++++.. +-+..+... ... ++
T Consensus 107 l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a---------~~il~l~~~---------~~~-~~ 167 (429)
T COG1253 107 LHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIA---------NAILRLFGV---------EPV-EE 167 (429)
T ss_pred hhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCC---------CCC-Cc
Confidence 33444455555666666667777777777888888888888877642 112222110 000 00
Q ss_pred HHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccc
Q 010540 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPV 293 (508)
Q Consensus 214 ~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V 293 (508)
. + ..... +..+ +...++...-+-.++...+-|++.+.+ .++
T Consensus 168 ~----------------------~------~~~~~-~~~~-~~~~~~~~g~~~~~E~~mi~~v~~l~~---------~~v 208 (429)
T COG1253 168 E----------------------A------LTSTE-EELE-LVSESAEEGVLEEEEREMINNVLDLDD---------RTV 208 (429)
T ss_pred c----------------------c------cCccH-HHHH-HHHhHHhcCCcCHHHHHHHHHHhccCC---------cEe
Confidence 0 0 00001 2222 343333333333333344556665554 458
Q ss_pred ccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEe-cCCCccccCCCCCCCccccccccCCCCCCcccccccccccC
Q 010540 294 SAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT 370 (508)
Q Consensus 294 ~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD-e~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~ 370 (508)
+++|+ .++.+++.+.+.+++.+.+.+++..+.||++ +.++++|++ |.||++........ .. ......+
T Consensus 209 ~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv--~~Kdll~~~~~~~~-~~------~~~~~~~ 279 (429)
T COG1253 209 REIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQS-DL------DLRVLVR 279 (429)
T ss_pred eeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEE--EHHHHHHHHhcCcc-cc------chhhccc
Confidence 99997 6788999999999999999888878888888 788899999 99999987765543 11 0112233
Q ss_pred CceeecCCCCCccchhhhhcccCCC
Q 010540 371 ESVVVDVDRPLSSGSMNRLSSSQRS 395 (508)
Q Consensus 371 ~~~~V~~~~~l~~~~~~~~~~~~~~ 395 (508)
++++||+++++.++++.|++.+.|+
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hm 304 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHM 304 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeE
Confidence 7999999999999999999985443
No 98
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.63 E-value=6e-08 Score=72.90 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=34.9
Q ss_pred ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
|+++|.++++++++++++.++++.|++++.+.+||+|
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d 37 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD 37 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence 4678889999999999999999999999999999999
No 99
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.60 E-value=4e-09 Score=99.91 Aligned_cols=128 Identities=11% Similarity=0.108 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhC-CCeEEE
Q 010540 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKG-SSHMAA 326 (508)
Q Consensus 250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~-~~~~a~ 326 (508)
|.+..+++.....+ +-.+..+++-|++...|+. |+|+|+ .++.+++.+.++.+.+..+.+. |+++++
T Consensus 36 eLl~liRdse~n~L-iD~dt~~mlEGvm~iadl~---------vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPV 105 (293)
T COG4535 36 ELLELIRDSEQNEL-IDADTLDMLEGVMDIADLR---------VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV 105 (293)
T ss_pred HHHHHHHHhhhccc-cChhHHHHHHHHHHHHHhh---------HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCc
Confidence 66676666554443 4445567889999988876 899997 5788999999999999999766 777777
Q ss_pred EEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCC
Q 010540 327 VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD 396 (508)
Q Consensus 327 VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~ 396 (508)
+-++.+++.||+ ++||||..+......- .+....++++||||+++++-+++.|+.++.|||
T Consensus 106 i~edkD~v~GIL--~AKDLL~~~~~~~~~F-------~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMA 166 (293)
T COG4535 106 ISEDKDHVEGIL--LAKDLLPFMRSDAEPF-------DIKELLRPAVVVPESKRVDRLLKEFRSQRNHMA 166 (293)
T ss_pred ccCCchhhhhhh--hHHHHHHHhcCCcccc-------cHHHhcccceecccchhHHHHHHHHHhhcCceE
Confidence 777788999999 9999998765332211 234455669999999999999999999987763
No 100
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.54 E-value=9.1e-08 Score=80.48 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=76.4
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCC
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD 378 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~ 378 (508)
++.++++++++.++.+.|.+++.+.+||+|+. |..+|++ |.+|+.+... ...+.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Giv--t~~Dl~~~~~---------------------~~~v~~~ 58 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGML--TITDFILILR---------------------LVSIHPE 58 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEE--EHHHHhhhee---------------------eEEeCCC
Confidence 45789999999999999999999999999985 7899999 8888865331 5678899
Q ss_pred CCCccchhhhhcccCCCCcccccccccccccCC-CceEEeechHHHHH
Q 010540 379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIED-GEVIGIITLEDVFE 425 (508)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~-G~lvGIVTleDIle 425 (508)
.++.+..+.|..+..+.-.+++ ++ |+++|+||..|++.
T Consensus 59 ~~l~~a~~~m~~~~~~~lpVvd---------~~~~~~~giit~~d~~~ 97 (98)
T cd04618 59 RSLFDAALLLLKNKIHRLPVID---------PSTGTGLYILTSRRILK 97 (98)
T ss_pred CcHHHHHHHHHHCCCCEeeEEE---------CCCCCceEEeehhhhhc
Confidence 9999999999887554422223 44 89999999999863
No 101
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.48 E-value=3.5e-07 Score=95.61 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=136.2
Q ss_pred cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----------cccccccc---cccce
Q 010540 236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------ETPVSAVS---IRRIP 302 (508)
Q Consensus 236 ~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----------~~~V~dim---~~~v~ 302 (508)
...+++.+..++- ++...+.++++.|+||.+.+.++++.+++.+-+++..... ..++.|.- ...+.
T Consensus 162 ~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~ 240 (381)
T KOG1764|consen 162 PPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIA 240 (381)
T ss_pred CCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhhe
Confidence 3447888888876 8888899999999999985557999999999998754221 11222221 24578
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCC-CCc---ccccccccccCCceeecCC
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDC-DLT---APLLSKQDEKTESVVVDVD 378 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~-~l~---~p~~~i~~~~~~~~~V~~~ 378 (508)
++.+++++.++++.|..++..-+||||++|+.+|+. ...|+........... ..+ ...........+.+....+
T Consensus 241 ~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~--s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ 318 (381)
T KOG1764|consen 241 SISEDTPVIEALKIMSERRISALPVVDENGKKVGNY--SRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPT 318 (381)
T ss_pred eecCCCcHHHHHHHHHhcCcCcceEEcCCCceecce--ehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeec
Confidence 899999999999999999999999999999999999 7777775554333321 111 1111222334456788889
Q ss_pred CCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540 379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ 429 (508)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg 429 (508)
..++.....+...+.|. ..+|| ++|.++|+||+.||+..++-
T Consensus 319 ssL~~vi~~lv~~~vHR-----l~VVd----~~~~l~GvvSLsDil~~l~~ 360 (381)
T KOG1764|consen 319 STLAEVIDKLVAHRVHR-----LWVVD----EDGVLVGVISLSDILSYLVL 360 (381)
T ss_pred chHHHHHHHHHhcCceE-----EEEEc----CCCcEEEEeeHHHHHHHHHh
Confidence 99999999998885555 44444 78999999999999999986
No 102
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.45 E-value=1.4e-07 Score=80.71 Aligned_cols=112 Identities=19% Similarity=0.274 Sum_probs=81.1
Q ss_pred ccceeecCCCCHHHHHHHHHhCC-CeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecC
Q 010540 299 RRIPRVPSDMPLYDILNEFQKGS-SHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDV 377 (508)
Q Consensus 299 ~~v~~V~~~~~l~d~L~~m~~~~-~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~ 377 (508)
+++.++++++++.++++.|.+++ .+.+||+|+.|+.+|++ +.+|++....+.... .+..++.........++.
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v--~~~dl~~~~~~~~~~----~~v~~~~~~~~~~~~v~~ 74 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGII--SLADLRAIPTSQWAQ----TTVIQVMTPAAKLVTVLS 74 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEE--EHHHHHHHHHhhccc----cchhhhhcccccceEECC
Confidence 35678999999999999997664 78899999999999999 999988755422111 111122222223457888
Q ss_pred CCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHH
Q 010540 378 DRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE 425 (508)
Q Consensus 378 ~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIle 425 (508)
+.++.+..+.|..+..+...++ + ++|.++|++|..||++
T Consensus 75 ~~~l~~a~~~~~~~~~~~l~Vv-----~----~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 75 EESLAEVLKLLEEQGLDELAVV-----E----DSGQVIGLITEADLLR 113 (114)
T ss_pred CCcHHHHHHHHHHCCCCeeEEE-----c----CCCcEEEEEeccceec
Confidence 9999999999988754433333 3 5689999999999874
No 103
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.45 E-value=3e-07 Score=69.03 Aligned_cols=54 Identities=26% Similarity=0.508 Sum_probs=50.2
Q ss_pred cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
|+++|++ +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++++
T Consensus 1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence 5789998 899999999999 99999999999999999876 899999999999864
No 104
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=8.8e-06 Score=85.83 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred cccccccccccc-eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceee
Q 010540 226 KTAEEAMTPIES-TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV 304 (508)
Q Consensus 226 ~~V~dIMtpr~~-vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V 304 (508)
.++.++|.+... .+...++.+.. ++++.|.+.+.+...|++++ ++++|+++.+++...... ...+.+.+.....+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 350 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV 350 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence 577888854221 12333555666 89999999999999999876 799999999999765433 345777777778899
Q ss_pred cCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 305 PSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 305 ~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
++++++.+++..|.+.... +||+|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 351 DAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 9999999999999987766 88888
No 105
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.11 E-value=3.1e-07 Score=92.88 Aligned_cols=124 Identities=9% Similarity=0.092 Sum_probs=90.0
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (508)
Q Consensus 250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~V 327 (508)
+.++.+.+.+.....+-.++...+.|++.+.+ .+|+++|+. ++.++++++++.++++.+.+++.+..||
T Consensus 35 eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~---------~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV 105 (292)
T PRK15094 35 DELLALIRDSEQNDLIDEDTRDMLEGVMDIAD---------QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV 105 (292)
T ss_pred HHHHHHHHhHhhcCCCCHHHHHHHHHHhccCC---------CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEE
Confidence 66777776554333333333334444444433 559999975 6899999999999999999999888999
Q ss_pred EecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcc
Q 010540 328 VKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSS 391 (508)
Q Consensus 328 vDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~ 391 (508)
+++. ++++|++ |.||++........ . ..+.+..++++++++++++.++++.|+.+
T Consensus 106 ~~~~~d~iiGiv--~~kDll~~~~~~~~-~------~~l~~l~r~~~~V~e~~~l~~~L~~m~~~ 161 (292)
T PRK15094 106 ISEDKDHIEGIL--MAKDLLPFMRSDAE-A------FSMDKVLRQAVVVPESKRVDRMLKEFRSQ 161 (292)
T ss_pred ecCCCCcEEEEE--EHHHHHhHhhccCC-c------CCHHHHcCCCcCcCCCCcHHHHHHHHHhc
Confidence 9875 7899999 99999854321110 0 12345567788999999999999999988
No 106
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.10 E-value=2.3e-05 Score=81.67 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=70.8
Q ss_pred EEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHh
Q 010540 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK 319 (508)
Q Consensus 240 ~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~ 319 (508)
...++.+.. ++++.+...+.....|++++ +++.|.++.+++..+.... ..+.+.|.....++++++++.+++..|.+
T Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (363)
T TIGR01186 254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVLK 330 (363)
T ss_pred eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHHh
Confidence 445566666 88899998888888888865 7899999999988654432 34777777888899999999999999999
Q ss_pred CCCeEEEEEe
Q 010540 320 GSSHMAAVVK 329 (508)
Q Consensus 320 ~~~~~a~VvD 329 (508)
++.. +||+|
T Consensus 331 ~~~~-~~v~~ 339 (363)
T TIGR01186 331 AGIK-VPVVD 339 (363)
T ss_pred CCCC-EEEEC
Confidence 9888 88998
No 107
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.08 E-value=4.7e-06 Score=85.04 Aligned_cols=154 Identities=11% Similarity=0.121 Sum_probs=115.3
Q ss_pred ccccHHHHHHHHHHhhhhhccCCC-CChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEE
Q 010540 185 ALFRRAQLKALVTIHSQEAGKGGE-LTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263 (508)
Q Consensus 185 ~~~s~eEL~~lv~~~~~e~~~~g~-l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~ 263 (508)
..+++.|.-..+.+.+.-+--... =++++..+++++-.|..--+ + +.+.+.++.++. ++++.-..++++.+
T Consensus 71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~---~----~p~v~sp~~tvg-~v~~~k~~~gF~g~ 142 (503)
T KOG2550|consen 71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFI---N----NPIVISPTTTVG-EVKEAKEKHGFSGI 142 (503)
T ss_pred cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccc---c----CCcccCCcccch-hhhhhccccccccc
Confidence 356666655555433211000011 14566777888877765332 3 445678999998 99998889999999
Q ss_pred EEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCC
Q 010540 264 PVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT 341 (508)
Q Consensus 264 PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t 341 (508)
||.++. ..+++|+|+.+|+-.. .+....+.++|+...++.|...+++++=+.+++.+-...||||+.|+++.++ +
T Consensus 143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~--~ 219 (503)
T KOG2550|consen 143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML--S 219 (503)
T ss_pred ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee--e
Confidence 999632 3689999999998754 4455789999998779999999999999999999999999999999999999 8
Q ss_pred CCCccccc
Q 010540 342 DGKKPKLN 349 (508)
Q Consensus 342 ~kDll~~i 349 (508)
..|+.+..
T Consensus 220 rtDl~k~~ 227 (503)
T KOG2550|consen 220 RTDLMKNR 227 (503)
T ss_pred hhhhhhhc
Confidence 88887543
No 108
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.93 E-value=1.6e-05 Score=83.30 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=92.2
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc-----c-ccccc------cccceee
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-----P-VSAVS------IRRIPRV 304 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~-----~-V~dim------~~~v~~V 304 (508)
++..+..++++. ++++.|...+++.+||++.+ ++.+|..+..|+.....+... . ++..- ..+++++
T Consensus 238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc 315 (381)
T KOG1764|consen 238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC 315 (381)
T ss_pred hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence 588899999998 99999999999999999987 666999999999865444321 1 22221 1456789
Q ss_pred cCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccccc
Q 010540 305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE 350 (508)
Q Consensus 305 ~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~ 350 (508)
.++.++.+++..|..++.|.+.|||+.|.++|++ +..|++..+.
T Consensus 316 ~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~Gvv--SLsDil~~l~ 359 (381)
T KOG1764|consen 316 RPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVI--SLSDILSYLV 359 (381)
T ss_pred eecchHHHHHHHHHhcCceEEEEEcCCCcEEEEe--eHHHHHHHHH
Confidence 9999999999999999999999999999999999 9999987765
No 109
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.84 E-value=1.5e-05 Score=79.33 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=84.2
Q ss_pred cccccccccc-ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc
Q 010540 291 TPVSAVSIRR-IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK 369 (508)
Q Consensus 291 ~~V~dim~~~-v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~ 369 (508)
.+|+++|.++ ++.+++++++.++++.|.+.+.+.++|+|+.|+.+|++ +.+|+.+....... ...|..++ +.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Giv--t~~dl~~~~~~~~~---~~~~v~~i--m~ 227 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVF--TDGDLRRALLGGGS---LKSEVRDF--MT 227 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEE--EcHHHHHHHhcCCc---ccCcHHHh--CC
Confidence 3588998888 88999999999999999988889999999999999999 99999865432111 11121122 23
Q ss_pred CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeec
Q 010540 370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT 419 (508)
Q Consensus 370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVT 419 (508)
.....++++.++.+..+.|........-++ + ++|+++|+|+
T Consensus 228 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-----d----~~g~l~GvI~ 268 (268)
T TIGR00393 228 LGPKTFKLDALLLEALEFLERRKITSLVVV-----D----DHNKVLGVLH 268 (268)
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCcEEEEE-----C----CCCeEEEEEC
Confidence 345679999999999999988754432223 3 5789999985
No 110
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.79 E-value=1.5e-05 Score=85.29 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=97.8
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCC----cEEEEeEHhHHhccCC------C----
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK----NIIGLLLVKSLLTVRP------E---- 288 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d----~ivGiv~~kDll~~~~------~---- 288 (508)
+++++++|+|.+ ++++++.-+.+. ...+.++.+.|..+||+|+..+ .+.|++-.+.++.... +
T Consensus 579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 367789999998 999999999998 8889999999999999986443 6788887777653110 0
Q ss_pred ----------------Cc----------------ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540 289 ----------------TE----------------TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336 (508)
Q Consensus 289 ----------------~~----------------~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G 336 (508)
.. .++..+|-..+++|++++++..++..|++-+.+...|++...+++|
T Consensus 656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g 735 (762)
T KOG0474|consen 656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG 735 (762)
T ss_pred cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence 00 1234444566788999999999999999999999999999999999
Q ss_pred cCCCCCCCccccc
Q 010540 337 LPPMTDGKKPKLN 349 (508)
Q Consensus 337 iv~~t~kDll~~i 349 (508)
++ |.||+....
T Consensus 736 il--TR~D~~~~~ 746 (762)
T KOG0474|consen 736 IL--TRKDLARYR 746 (762)
T ss_pred EE--ehhhhhhHH
Confidence 99 999998433
No 111
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.69 E-value=2.1e-05 Score=84.51 Aligned_cols=101 Identities=16% Similarity=0.141 Sum_probs=82.4
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccce
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP 302 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~ 302 (508)
-++.+++++|+| +++++++++++. ++++.|.++++..+||+|++ ++++|+++.+|++....+. ..+++|.....
T Consensus 192 ~~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv 265 (449)
T TIGR00400 192 KPEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAV 265 (449)
T ss_pred CCCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCC
Confidence 356789999987 788899999998 99999999999999999875 7899999999999765432 24677665555
Q ss_pred eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 303 RVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+..+++.+.+.+..|.+++....+|.-
T Consensus 266 ~~~~~~~l~~~~~~~~~~R~~wL~v~~ 292 (449)
T TIGR00400 266 KPLDDSYFDTSILVMAKNRIIWLLVLL 292 (449)
T ss_pred CCCcchhhhchHHHHHHhccchHHHHH
Confidence 444677889999999999988888763
No 112
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00013 Score=62.10 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=49.0
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ ++.++.+++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence 468899975 677899999998 99999999999999999875 78999999999874
No 113
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.51 E-value=6.1e-05 Score=82.98 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=89.0
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------------
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------- 288 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------------- 288 (508)
...+|+++|+. .++.+++++++++ ++.+.|.+++++.+||++++ ++++|+++.+|++.....
T Consensus 244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~ 320 (546)
T PRK14869 244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE 320 (546)
T ss_pred cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence 36789999982 3888999999999 99999999999999999876 899999999999864321
Q ss_pred -----------Ccccccccccccceee---cCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540 289 -----------TETPVSAVSIRRIPRV---PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK 347 (508)
Q Consensus 289 -----------~~~~V~dim~~~v~~V---~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~ 347 (508)
+..+++++|.+.+..+ +...+...+.+.|++.+....|++... ...||+ ++.+.++
T Consensus 321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~-ll~gIl--sDT~~f~ 390 (546)
T PRK14869 321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGL-LLAAIL--SDTLLFK 390 (546)
T ss_pred chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH--HHhcCcc
Confidence 0113455655554433 445666788888898888888877632 467888 7777764
No 114
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.46 E-value=0.00034 Score=60.24 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=49.0
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+|+++|.+ ++..+++++++. ++++.|.++++..+||++++ ++++|+++.+|+..
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence 679999987 677899999998 99999999999999999865 78999999999863
No 115
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.44 E-value=0.00029 Score=59.55 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=50.3
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
....++.++|.+ ++.++++++++. ++++.+.+++.+.+||++++ ++++|+++.+|++.
T Consensus 56 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~ 113 (114)
T cd04604 56 ILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR 113 (114)
T ss_pred cccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence 344579999987 667899999999 99999999999999999865 88999999999874
No 116
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.44 E-value=0.00022 Score=69.11 Aligned_cols=90 Identities=20% Similarity=0.270 Sum_probs=71.8
Q ss_pred cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc
Q 010540 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK 369 (508)
Q Consensus 290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~ 369 (508)
..+|.++|.+++.++.+++++.++.+.|.+++++-+||+|
T Consensus 171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd---------------------------------------- 210 (294)
T COG2524 171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD---------------------------------------- 210 (294)
T ss_pred cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----------------------------------------
Confidence 4679999999999999999999999999999999999998
Q ss_pred CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccccccce--eEE
Q 010540 370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHK--RIR 447 (508)
Q Consensus 370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~~~~~~--~~~ 447 (508)
+++++||+|+.||.+.+... +..-...+..+ -+.
T Consensus 211 -----------------------------------------~dk~vGiit~~dI~~aia~g---~~~~kV~~~M~k~vit 246 (294)
T COG2524 211 -----------------------------------------DDKIVGIITLSDIAKAIANG---NLDAKVSDYMRKNVIT 246 (294)
T ss_pred -----------------------------------------CCceEEEEEHHHHHHHHHcC---CccccHHHHhccCCce
Confidence 45999999999999998752 22121222222 388
Q ss_pred eccccChHHHhhcCCC
Q 010540 448 VAAAAAASSVARAPSS 463 (508)
Q Consensus 448 v~~~~~~~~~~~~~~~ 463 (508)
++....+.|.-|.+..
T Consensus 247 I~eDe~i~dAir~M~~ 262 (294)
T COG2524 247 INEDEDIYDAIRLMNK 262 (294)
T ss_pred EcCchhHHHHHHHHHh
Confidence 8888888887776543
No 117
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.40 E-value=0.00027 Score=60.89 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=35.9
Q ss_pred ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd 96 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD 96 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence 458899888999999999999999999999999999999
No 118
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.33 E-value=0.00071 Score=73.42 Aligned_cols=100 Identities=13% Similarity=0.208 Sum_probs=70.4
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc---cccccccc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---PVSAVSIR 299 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~---~V~dim~~ 299 (508)
..+.+|+++|++..+++++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|+++....... ..+.+++-
T Consensus 158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~ 235 (502)
T PRK07107 158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPLELLDSSKRYVVG 235 (502)
T ss_pred CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence 45678999999766889999999998 99999999999999999865 789999999999975422110 01111110
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~V 327 (508)
..+..+ ...+..+.+.+.+.+...|
T Consensus 236 --~av~~~-~~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 236 --AGINTR-DYAERVPALVEAGADVLCI 260 (502)
T ss_pred --eccChh-hHHHHHHHHHHhCCCeEee
Confidence 123322 2445555666667766554
No 119
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.32 E-value=0.00037 Score=59.49 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=49.4
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+++++|.. ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence 4568889976 778899999998 99999999999999999865 78999999999874
No 120
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.26 E-value=0.00047 Score=59.21 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=50.5
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC--CcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP--KNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~--d~ivGiv~~kDll~ 284 (508)
.+.+++++|+.-.++.++++++++. ++++.|.+++++.+||++++. ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 4567888997323678999999998 999999999999999998753 58999999999863
No 121
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.16 E-value=0.00075 Score=57.23 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=48.8
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+++++|.+ .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~ 112 (113)
T cd04607 57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS 112 (113)
T ss_pred CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence 3468899976 677899999998 99999999999999999865 78999999999873
No 122
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=97.14 E-value=0.00031 Score=69.28 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=96.8
Q ss_pred ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCC-CCccccccccccc
Q 010540 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDC-DLTAPLLSKQDEK 369 (508)
Q Consensus 291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~-~l~~p~~~i~~~~ 369 (508)
....+||.+++++++++++++++.++|++++.+-.||+||..+++|+| |.+|+++...-....+ .-.+|...+.-+.
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiV--t~~dl~~~a~~~p~qrlr~~~~~~vk~imt 322 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIV--TQRDLLKHARPSPFQRLRFLRPPTVKGIMT 322 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeee--eHHHHhhccCcchHHHhhccCCCccccccc
Confidence 446789999999999999999999999999999999999999999999 9999997554322211 1112222222334
Q ss_pred CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540 370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL 428 (508)
Q Consensus 370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv 428 (508)
.+...+..+++.-++...|...-.|--.++ | +.|+++||||-.|++..+.
T Consensus 323 ~~v~tv~pdtpa~~lvp~lad~g~H~lpvl-----d----~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 323 TPVVTVRPDTPAVELVPRLADEGLHALPVL-----D----AAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred CcceeecCCCcHHHHHHHhhcCCcceeeEE-----c----CCCcEEEEeeHHHHHHHHH
Confidence 466778888888888877776655443333 4 8999999999999998764
No 123
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.14 E-value=0.00077 Score=57.51 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=51.1
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+.++.++|.+ ++.++++++++. ++++.+.+.+.+++||++++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~ 121 (122)
T cd04585 64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR 121 (122)
T ss_pred hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence 356789999976 788999999998 99999999999999999865 78999999999874
No 124
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.12 E-value=0.0013 Score=71.13 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=71.8
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccc----cccccc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSA----VSIRRI 301 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~d----im~~~v 301 (508)
.+++++|++ ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..... +..+ .+....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa 221 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA 221 (479)
T ss_pred CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence 569999986 889999999998 99999999999999999875 7899999999999754332 1211 112222
Q ss_pred eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 302 PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+.......+.++.|.+.+.+. +++|
T Consensus 222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D 246 (479)
T PRK07807 222 --VGINGDVAAKARALLEAGVDV-LVVD 246 (479)
T ss_pred --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence 223344678888888888887 5556
No 125
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.11 E-value=0.0016 Score=70.69 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=78.3
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc---ccccccccccc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRI 301 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~---~~V~dim~~~v 301 (508)
+.+++++|++ .++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++....... ..-..++....
T Consensus 146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa 222 (486)
T PRK05567 146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA 222 (486)
T ss_pred CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence 4579999983 3788999999998 99999999999999999876 78999999999987543211 11122223333
Q ss_pred eeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540 302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (508)
Q Consensus 302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv 338 (508)
..++++ -.+.++.|.+.+.+.+.|...+|+..|++
T Consensus 223 i~~~~~--~~e~a~~L~~agvdvivvD~a~g~~~~vl 257 (486)
T PRK05567 223 VGVGAD--NEERAEALVEAGVDVLVVDTAHGHSEGVL 257 (486)
T ss_pred cccCcc--hHHHHHHHHHhCCCEEEEECCCCcchhHH
Confidence 344442 27788888888888664433467766666
No 126
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.00095 Score=57.45 Aligned_cols=58 Identities=19% Similarity=0.434 Sum_probs=51.1
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
....+++++|.+ .+.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|++.
T Consensus 66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~ 123 (124)
T cd04600 66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA 123 (124)
T ss_pred cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence 456679999976 788899999998 99999999999999999864 78999999999874
No 127
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.00048 Score=59.30 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=84.0
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccc---c-ccccCCceee
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLS---K-QDEKTESVVV 375 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~---i-~~~~~~~~~V 375 (508)
++.++++++++.++++.|.+++.+.+||+|+.|+++|++ +.+|++........... ..+... . ........++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv--~~~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v 78 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVY--SRFDVINLAKEGAYNNL-DLTVGEALERRSQDFEGVRTC 78 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEE--eHHHHHHHHhcCccccc-cCCHHHHHhhcccCCCCCeEE
Confidence 567899999999999999999999999999999999999 99999865432211111 001011 0 0112345789
Q ss_pred cCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHH
Q 010540 376 DVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE 425 (508)
Q Consensus 376 ~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIle 425 (508)
+.+.++.+..+.|..+..+...+++ ++|+++|+||.+|+++
T Consensus 79 ~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~~~~~Givt~~di~~ 119 (120)
T cd04641 79 SPDDCLRTIFDLIVKARVHRLVVVD---------ENKRVEGIISLSDILQ 119 (120)
T ss_pred cCCCcHHHHHHHHHhcCccEEEEEC---------CCCCEEEEEEHHHhhc
Confidence 9999999999999988655533333 5689999999999975
No 128
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.06 E-value=0.0011 Score=55.33 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=48.7
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+++++|.+ .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus 51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence 3468899976 567889999998 99999999999999999875 78999999999874
No 129
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0011 Score=55.98 Aligned_cols=55 Identities=18% Similarity=0.389 Sum_probs=48.2
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++.++|.+ ++.++++++++. ++++.|.+++..++||+++ ++++|+++.+|+++
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence 4578899975 677899999998 9999999999999999974 78999999999874
No 130
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.03 E-value=0.0016 Score=54.27 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=47.1
Q ss_pred ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+++++|.+ ....+++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 47888976 566789999998 99999999999999999875 78999999999874
No 131
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.03 E-value=0.0012 Score=55.63 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=50.0
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ ++.+++++.++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~ 107 (108)
T cd04596 51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK 107 (108)
T ss_pred ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence 35578999976 678899999998 99999999999999999865 78999999999874
No 132
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.0013 Score=56.74 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=45.6
Q ss_pred cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (508)
Q Consensus 228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll 283 (508)
+.++|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence 3557765 788999999998 99999999999999999875 7899999999975
No 133
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.02 E-value=0.00093 Score=68.68 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=51.9
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
+.+.+|+++|++ ++.++++++++. ++++.|.+++..++||+++ ++++|+++.+|++++
T Consensus 266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~ 323 (326)
T PRK10892 266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA 323 (326)
T ss_pred cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence 456789999987 788999999998 9999999999999999974 689999999999854
No 134
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.01 E-value=0.0014 Score=55.72 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=47.5
Q ss_pred ccccccccccccceEEEeCC--CCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVN--SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~--~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++.++|.+ ++.+++++ +++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence 4578899976 67778776 5777 99999999999999999875 78999999999874
No 135
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.01 E-value=0.0013 Score=55.36 Aligned_cols=55 Identities=22% Similarity=0.475 Sum_probs=48.8
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+++++|.+ ++.+++++.++. ++++.+.+.+.+++||+++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence 4578999976 778899999998 9999999999999999986 78999999999874
No 136
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.00 E-value=0.00085 Score=59.72 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=67.7
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCc---------cccccccc---
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT---------APLLSKQD--- 367 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~---------~p~~~i~~--- 367 (508)
++.++++++++.++++.|.+++.+.+||+|+.|+++|++ |.+|++............. .+...+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Giv--t~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGIL--TLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEE--EHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence 467899999999999999988889999999999999999 9999987664322211000 00001111
Q ss_pred ----ccCCceeecCCCCCccchhhhhcccCC
Q 010540 368 ----EKTESVVVDVDRPLSSGSMNRLSSSQR 394 (508)
Q Consensus 368 ----~~~~~~~V~~~~~l~~~~~~~~~~~~~ 394 (508)
+....+.++++.++.+..+.|..+...
T Consensus 80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~ 110 (133)
T cd04592 80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVK 110 (133)
T ss_pred hhcccCCCCEEECCCCCHHHHHHHHHHcCCC
Confidence 124567899999999999999887544
No 137
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.99 E-value=0.00087 Score=58.32 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=46.9
Q ss_pred cccccccccccccceEEEe----CCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLD----VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~----~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+...+..++ +++++. ++++.|.+++.+.+||++++.++++|+|+.+|++.
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3567899997633333443 577888 99999999999999999864358999999999874
No 138
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.96 E-value=0.0015 Score=57.99 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=49.6
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|++ ++.++++++++. ++++.|.+.+++.+||+++ ++++|+++.+|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence 45689999986 677899999998 9999999999999999985 78999999999874
No 139
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.95 E-value=0.0015 Score=55.49 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=49.1
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 34578899965 788999999998 9999999999999999976 78999999999874
No 140
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.93 E-value=0.0031 Score=68.08 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=68.1
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccc----cccc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAV----SIRR 300 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~di----m~~~ 300 (508)
+.+++++|++ +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++..... +..+. ....
T Consensus 145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vga 218 (475)
T TIGR01303 145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGA 218 (475)
T ss_pred CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehh
Confidence 3579999997 788999999998 99999999999999999865 7899999999999754322 11111 0111
Q ss_pred ceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540 301 IPRVPSDMPLYDILNEFQKGSSHMAAV 327 (508)
Q Consensus 301 v~~V~~~~~l~d~L~~m~~~~~~~a~V 327 (508)
. +.......+.++.+.+.+.+...+
T Consensus 219 a--v~~~~~~~~ra~~Lv~aGVd~i~~ 243 (475)
T TIGR01303 219 A--VGINGDVGGKAKALLDAGVDVLVI 243 (475)
T ss_pred e--eeeCccHHHHHHHHHHhCCCEEEE
Confidence 1 333345566677776666666433
No 141
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.90 E-value=0.0019 Score=54.89 Aligned_cols=56 Identities=23% Similarity=0.481 Sum_probs=48.0
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC-CcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~-d~ivGiv~~kDll~ 284 (508)
.+++++|.+ ++.++++++++. ++++.|.+++..++||++++. ++++|+++.+|++.
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 347788876 778899999998 999999999999999998642 58999999999874
No 142
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.90 E-value=0.0025 Score=44.35 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=26.5
Q ss_pred ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+.++++++++.++++.|.+++.+.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 30 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD 30 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence 46789999999999999999999999998
No 143
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.90 E-value=0.0019 Score=54.63 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=49.0
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.++.++|.+ ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence 44568888975 678899999998 99999999999999999865 78999999999873
No 144
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.89 E-value=0.003 Score=53.54 Aligned_cols=54 Identities=22% Similarity=0.485 Sum_probs=47.6
Q ss_pred ccccccccccceEEEeCCCCchHHHHHHHHH-cCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILA-RGHSRVPVYSGNPKNIIGLLLVKSLL 283 (508)
Q Consensus 227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~-~~~sr~PV~~~~~d~ivGiv~~kDll 283 (508)
+++++|++ +++++.++.++. ++.+.|.+ ++++++||++++..+++|+++.+|++
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 69999986 788999999998 99999999 79999999997522899999999873
No 145
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.89 E-value=0.0015 Score=55.09 Aligned_cols=55 Identities=24% Similarity=0.361 Sum_probs=48.5
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ ...++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence 578899976 677899999998 99999999999999999875 78999999999874
No 146
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.88 E-value=0.0032 Score=68.46 Aligned_cols=102 Identities=13% Similarity=0.186 Sum_probs=70.8
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc--ccccccccccc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRI 301 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~--~~V~dim~~~v 301 (508)
.+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...... .+..|-.-+=.
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~ 238 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL 238 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence 4678999999855688999999998 99999999999999999865 78999999999997653211 11111111111
Q ss_pred e--eecCCCCHHHHHHHHHhCCCeEEEE
Q 010540 302 P--RVPSDMPLYDILNEFQKGSSHMAAV 327 (508)
Q Consensus 302 ~--~V~~~~~l~d~L~~m~~~~~~~a~V 327 (508)
+ .|.....-.+-.+.+.+.+..++.+
T Consensus 239 vgaavg~~~~~~~r~~~l~~ag~d~i~i 266 (505)
T PLN02274 239 VGAAIGTRESDKERLEHLVKAGVDVVVL 266 (505)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence 1 2333333455566666677777544
No 147
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.88 E-value=0.0021 Score=54.16 Aligned_cols=57 Identities=23% Similarity=0.383 Sum_probs=49.6
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
..++.++|.+ ++.++++++++. ++++.|.+.+.+.+||++++.++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4689999987 678899999998 99999999999999999762378999999999874
No 148
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.87 E-value=0.002 Score=54.39 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=48.1
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ ++.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence 358899976 677899999998 99999999999999999865 78999999999874
No 149
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.87 E-value=0.002 Score=54.23 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=49.8
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
+.+++++|.+ ++..+++++++. ++++.|.+++...+||++++ ++++|+++..|++.+
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence 4578899976 678899999998 99999999999999999865 789999999999853
No 150
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0018 Score=55.72 Aligned_cols=57 Identities=16% Similarity=0.378 Sum_probs=49.9
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.++.++|.+ .+.++++++++. ++++.|.+.+.+.+||.+++ ++++|+|+.+|+++
T Consensus 68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence 45678899976 788999999998 99999999999999999865 78999999999874
No 151
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.84 E-value=0.0021 Score=65.86 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=51.4
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
.+.+|+++|++ ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++++
T Consensus 261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~ 318 (321)
T PRK11543 261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA 318 (321)
T ss_pred cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence 34569999987 778899999998 99999999999999999875 689999999999854
No 152
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.84 E-value=0.0019 Score=56.54 Aligned_cols=56 Identities=18% Similarity=0.394 Sum_probs=49.2
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
...++.++|.+ ++..+++++++. ++++.|.+.+.+++||.++ ++++|+++.+|+++
T Consensus 76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~ 131 (132)
T cd04636 76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR 131 (132)
T ss_pred cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence 34479999976 778899999998 9999999999999999986 78999999999874
No 153
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.83 E-value=0.0054 Score=53.47 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=28.3
Q ss_pred ccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+++.++++++++.++++.|++++.+.+||+|
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd 32 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD 32 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence 5678899999999999999999888999998
No 154
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.83 E-value=0.0041 Score=67.55 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=71.4
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc---ccccccccc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---PVSAVSIRR 300 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~---~V~dim~~~ 300 (508)
.+.+|+++|+|..++++++++.++. |+++.|.+++...+||++++ ++++|+|+.+|+++....... .-..+..-
T Consensus 157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vg- 233 (495)
T PTZ00314 157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLVG- 233 (495)
T ss_pred CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEEE-
Confidence 3568999999877899999999998 99999999999999999876 789999999999976432110 01111111
Q ss_pred ceeecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 010540 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG 332 (508)
Q Consensus 301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g 332 (508)
..+.......+.++.+.+.+..+..|--..|
T Consensus 234 -aavg~~~~~~~~~~~l~~ag~d~i~id~a~G 264 (495)
T PTZ00314 234 -AAISTRPEDIERAAALIEAGVDVLVVDSSQG 264 (495)
T ss_pred -EEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 1233322335555566666766654433333
No 155
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.82 E-value=0.0016 Score=55.79 Aligned_cols=57 Identities=12% Similarity=0.353 Sum_probs=50.2
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+.++.++|.+ +..++++++++. ++++.+.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence 456678899976 778899999998 9999999999999999986 78999999999874
No 156
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.79 E-value=0.0029 Score=52.89 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=47.0
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ +..+++++.++. ++++.|.+++.+.+||+++ ++++|+++.+|++.
T Consensus 50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence 357788876 577899999998 9999999999999999973 78999999999874
No 157
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.78 E-value=0.0028 Score=53.10 Aligned_cols=56 Identities=27% Similarity=0.452 Sum_probs=46.3
Q ss_pred ccccccccccccceEEEeC-CCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDV-NSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~-~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++.++|.+ ++..+.. ++++. ++++.|.+.+++++||++++ ++++|+++.+|++.
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence 4578899965 3444556 88988 99999999999999999865 78999999999874
No 158
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.78 E-value=0.0025 Score=53.74 Aligned_cols=54 Identities=24% Similarity=0.456 Sum_probs=47.8
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll 283 (508)
+.++.++|.+ ++.++.+++++. ++++.|.+++..++||+++ ++++|+++..|++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~ 109 (111)
T cd04626 56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDIL 109 (111)
T ss_pred cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhc
Confidence 4568888975 778899999998 9999999999999999986 7899999999987
No 159
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.77 E-value=0.0025 Score=53.66 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=49.0
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ ++..+++++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~ 110 (111)
T cd04589 55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence 34578899976 788899999998 9999999999999999975 78999999999874
No 160
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.0027 Score=54.40 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=50.1
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
..+.++.++|.. ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus 64 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~ 121 (122)
T cd04803 64 ERDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR 121 (122)
T ss_pred ccCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence 356678899965 778899999998 99999999999999999875 68999999999874
No 161
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.75 E-value=0.0024 Score=54.54 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=50.4
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
..+.++.++|.+ .+.+++.++++. ++++.+.+.+++.+||+++ ++++|+++.+|+++
T Consensus 64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence 456779999987 778899999998 9999999999999999975 78999999999874
No 162
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.74 E-value=0.0021 Score=56.52 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=50.4
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
....+++++|.+ ++.++++++++. ++++.|.+.+.+++||++ + ++++|+++.+|+++
T Consensus 78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~ 134 (135)
T cd04586 78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR 134 (135)
T ss_pred hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence 456789999976 778899999998 999999999999999998 4 79999999999874
No 163
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.73 E-value=0.0032 Score=52.78 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=48.0
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence 457788876 778899999998 99999999999999999864 78999999999874
No 164
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.73 E-value=0.0026 Score=54.56 Aligned_cols=57 Identities=19% Similarity=0.403 Sum_probs=49.7
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
...++.++|.+ ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence 45678899975 678899999998 99999999999999999865 78999999999874
No 165
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.72 E-value=0.0038 Score=51.81 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=31.7
Q ss_pred ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP 338 (508)
Q Consensus 299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv 338 (508)
++++.+++++++.++++.|.+++.+.+||+|+.|+..|++
T Consensus 1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv 40 (96)
T cd04614 1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGII 40 (96)
T ss_pred CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEE
Confidence 3567899999999999999888999999999433333333
No 166
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.72 E-value=0.0031 Score=52.67 Aligned_cols=55 Identities=29% Similarity=0.563 Sum_probs=47.9
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence 457888976 678899999998 99999999999999999865 78999999999873
No 167
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0024 Score=53.95 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=48.5
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++.++|.+ ++.++++++++. ++++.|.+++.+.+||+++ +.++|+++.+|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence 4578899976 677899999998 9999999999999999986 78999999999874
No 168
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.70 E-value=0.0035 Score=52.60 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=49.1
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence 34678889976 778899999998 99999999999999999865 78999999999874
No 169
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.69 E-value=0.003 Score=52.51 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=48.2
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll 283 (508)
+.++.++|.+ +..++++++++. ++++.|.+++.+.+||+++ ++++|+++.+|++
T Consensus 50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence 4568899976 778899999998 9999999999999999986 7899999999987
No 170
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.69 E-value=0.0031 Score=53.04 Aligned_cols=56 Identities=18% Similarity=0.361 Sum_probs=48.9
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ ++.++++++++. ++++.|.+++.+.+||.+ + ++++|+++.+|++.
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence 45678899976 678899999998 999999999999999998 3 78999999999873
No 171
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.67 E-value=0.0033 Score=52.98 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=48.5
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.++.++|.+ ++.++++++++. ++++.+.+++...+||++++ +++|+++.+|++.
T Consensus 56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence 34578899976 678889999998 99999999999999999863 8999999999873
No 172
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.0023 Score=54.22 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=46.6
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ .+.++++++++. ++++.|.+.+ .+||++++ ++++|+++.+|+++
T Consensus 61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~ 115 (116)
T cd04643 61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK 115 (116)
T ss_pred hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence 45679999987 678899999998 9999998755 59999865 78999999999874
No 173
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0034 Score=52.82 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=48.0
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.. ++.+++++.++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence 468888965 778899999998 99999999999999999865 78999999999863
No 174
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.62 E-value=0.0032 Score=53.52 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=45.7
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+++.+|++.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence 45889997633333334488988 99999999999999999865 78999999999873
No 175
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.57 E-value=0.0036 Score=53.71 Aligned_cols=55 Identities=29% Similarity=0.448 Sum_probs=48.3
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+++++|.+ ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence 358888975 788899999998 99999999999999999765 78999999999874
No 176
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.54 E-value=0.0041 Score=52.29 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=48.4
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++.++|.. ++.++++++++. ++++.|.+++.+++||+++ ++++|+++.+|++.
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 3568888865 778899999998 9999999999999999986 78999999999874
No 177
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=96.50 E-value=0.0035 Score=56.71 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=34.7
Q ss_pred ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
...+|.+|++++.+++++.++++.|+.+++...||++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~ 103 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE 103 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence 5567899999999999999999999999999999998
No 178
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.48 E-value=0.0043 Score=53.86 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=49.3
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeC-CCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~-~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|++ ++++++++.++. ++++.|.+.++..+||+++ +.++++|+|+.+|++.
T Consensus 69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 45678999976 788899999998 9999999999999999853 3478999999999874
No 179
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=96.47 E-value=0.0054 Score=68.11 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=36.1
Q ss_pred ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.+++|+|.++...+++++++.|+++.|.+++.+..||+|
T Consensus 447 ~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD 485 (574)
T PRK01862 447 TQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD 485 (574)
T ss_pred CcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc
Confidence 568999988899999999999999999999889999999
No 180
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.44 E-value=0.0089 Score=50.11 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=46.6
Q ss_pred ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+++++|.+ ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+.+
T Consensus 56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence 47788865 677899999998 99999999998999999865 78999999999863
No 181
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.43 E-value=0.007 Score=41.94 Aligned_cols=46 Identities=17% Similarity=0.457 Sum_probs=39.5
Q ss_pred eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
+.++++++++. ++++.+.+++++.+||++++ ++++|+++.+++...
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence 35678888988 99999999999999999875 789999999998753
No 182
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.43 E-value=0.0082 Score=64.58 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=36.0
Q ss_pred ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus 335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd 373 (454)
T TIGR01137 335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT 373 (454)
T ss_pred CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 568999989999999999999999999988888999998
No 183
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.013 Score=63.50 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=70.6
Q ss_pred ccccccccccc---ceEEEeCC-CCchHHHHHHHHHcCCcEEEEee-CCCCcEEEEeEHhHHhccCCC------------
Q 010540 226 KTAEEAMTPIE---STFSLDVN-SKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRPE------------ 288 (508)
Q Consensus 226 ~~V~dIMtpr~---~vv~v~~~-~tl~~eal~~~~~~~~sr~PV~~-~~~d~ivGiv~~kDll~~~~~------------ 288 (508)
.-..++|.|+. ....+..+ .+++ +....|.++.|+.+||+- ++.+.++|++..+|+.....+
T Consensus 543 t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~ 621 (696)
T KOG0475|consen 543 TLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS 621 (696)
T ss_pred chhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecc
Confidence 34556665532 24455544 5776 777788899999999884 445779999999998643210
Q ss_pred ---------------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEE
Q 010540 289 ---------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV 328 (508)
Q Consensus 289 ---------------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~Vv 328 (508)
.....+++|--.+.+|...+|.+-+++.|++-+.+...|.
T Consensus 622 ~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~ 676 (696)
T KOG0475|consen 622 IYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT 676 (696)
T ss_pred cccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc
Confidence 0123566665666789999999999999997777766553
No 184
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.35 E-value=0.0026 Score=68.46 Aligned_cols=136 Identities=17% Similarity=0.167 Sum_probs=105.1
Q ss_pred cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecC---CCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK---GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE 368 (508)
Q Consensus 292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~---g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~ 368 (508)
..++.|.+++.++++++++.++++.|.+++.+.+||+|+. |+++|++ |.+|++.... . ...+.+.
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIV--t~rDL~~~~~---~-------~~~V~dv 148 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGII--TKRDIRFVKD---K-------GKPVSEV 148 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEE--EHHHHhhhhc---C-------CCCHHHh
Confidence 4667788899999999999999999999999999999987 7999999 9999974321 0 1122233
Q ss_pred cC--CceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccccccceeE
Q 010540 369 KT--ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRI 446 (508)
Q Consensus 369 ~~--~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~~~~~~~~ 446 (508)
++ ..++++++.++.+.++.|+.+..+...+++ ++|+++|+||.+||++++. .. ....+...+|
T Consensus 149 m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD---------e~G~lvGiVT~~DIl~~~~---~~---~~~~d~~g~l 213 (450)
T TIGR01302 149 MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD---------KNGELVGLITMKDIVKRRK---FP---HASKDENGRL 213 (450)
T ss_pred hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc---------CCCcEEEEEEhHHhhhccc---CC---cceEeCCCCE
Confidence 33 688999999999999999998776655555 8999999999999998852 11 1112223478
Q ss_pred EeccccCh
Q 010540 447 RVAAAAAA 454 (508)
Q Consensus 447 ~v~~~~~~ 454 (508)
+|+|++++
T Consensus 214 ~V~aav~~ 221 (450)
T TIGR01302 214 IVGAAVGT 221 (450)
T ss_pred EEEEEecC
Confidence 88888887
No 185
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.34 E-value=0.0083 Score=52.01 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=44.7
Q ss_pred ccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 229 ~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.|.+ ++.++++++++. ++++.|.+++.+++||++++ ++++|+++..|+++
T Consensus 74 ~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS 125 (126)
T ss_pred cccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence 345544 678899999998 99999999999999999875 78999999999874
No 186
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.32 E-value=0.0075 Score=50.57 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.7
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.++.++|.+ ++.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence 467788865 778899999998 99999999999999999865 78999999999873
No 187
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.31 E-value=0.0081 Score=50.56 Aligned_cols=56 Identities=16% Similarity=0.276 Sum_probs=48.0
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.+++++|.+ ++.+++.++++. ++++.+.+++...+||++++ +.++|+++.+|+++
T Consensus 56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence 3468888876 678899999998 99999999899999999875 78999999999874
No 188
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.28 E-value=0.013 Score=61.60 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=62.2
Q ss_pred HHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-Cccccc
Q 010540 216 IISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-TETPVS 294 (508)
Q Consensus 216 ~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-~~~~V~ 294 (508)
.+..+-...-.+++++|.|.... ...+.+ .+++. ++.+.+.|+++ |+++..+...+... .+..+.
T Consensus 264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~---~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 329 (382)
T TIGR03415 264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG---WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE 329 (382)
T ss_pred HhcccCcccceeHHHHhcccccc--cccCcc---hhhhh---cccceeEeecc------ceecccchHhHhhcccccchh
Confidence 34444445667899999763332 222222 23333 77888888764 78877776543221 233466
Q ss_pred ccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 295 dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
+ +.+...++++++++.+++..+.+....+ +|+|
T Consensus 330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 362 (382)
T TIGR03415 330 S-LEAAPTVINPDTLMRDVLAARHRTGGAI-LLVE 362 (382)
T ss_pred h-hcccCcccCCCCcHHHHHHHHhcCCCCe-EEee
Confidence 6 5678889999999999999888776654 4556
No 189
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.18 E-value=0.0084 Score=64.31 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=59.9
Q ss_pred HHHHHHHhhc---CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540 213 ETTIISGALD---LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP 287 (508)
Q Consensus 213 E~~~i~~vl~---l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~ 287 (508)
++++..+++. =...+|+++||. ++++++.++-+- |++-.|.++++.++||.++ ++++|+++..|++....
T Consensus 198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS 270 (610)
T ss_pred hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence 4566677765 245689999997 999999999988 9999999999999999986 79999999999997543
No 190
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.15 E-value=0.01 Score=49.99 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=43.4
Q ss_pred ccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 231 AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 231 IMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+|.+ ++.++++++++. ++++.|.+++...+||+++ ++++|+++.+|+++
T Consensus 56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence 7875 677899999998 9999999999999999953 78999999999874
No 191
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.15 E-value=0.0045 Score=52.05 Aligned_cols=109 Identities=18% Similarity=0.154 Sum_probs=83.4
Q ss_pred cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCC
Q 010540 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD 378 (508)
Q Consensus 300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~ 378 (508)
++.++++++++.++++.|.+++...++|+|+. |+.+|++ +.+|+++........ .+ +....+...+++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v--~~~~l~~~~~~~~~~----~~---~~~~~~~~~~v~~~ 72 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVV--HVKDLLRALAEGEED----LD---LRDLLRPPLFVPES 72 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEE--EHHHHHHHHHcCCCc----CC---HHHHhcCCeecCCC
Confidence 46789999999999999998888889999987 9999999 999998765432211 11 22233456788999
Q ss_pred CCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHH
Q 010540 379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE 426 (508)
Q Consensus 379 ~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIlee 426 (508)
.++.+..+.|..+......++ + ++|+++|+||..|+++|
T Consensus 73 ~~l~~~~~~~~~~~~~~~~Vv-----~----~~~~~~Gvit~~di~~~ 111 (111)
T cd04590 73 TPLDDLLEEMRKERSHMAIVV-----D----EYGGTAGLVTLEDILEE 111 (111)
T ss_pred CcHHHHHHHHHhcCCcEEEEE-----E----CCCCEEEEeEHHHhhcC
Confidence 999999999998654432223 3 57999999999999875
No 192
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=95.98 E-value=0.011 Score=50.43 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=46.6
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCc---EEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS---RVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~s---r~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.+++++|.+ ++..+++++++. ++++.|.+++.. ..||++++ ++++|+++.+|++.
T Consensus 59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence 45679999986 788899999998 999999887753 44677665 88999999999874
No 193
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.97 E-value=0.012 Score=52.61 Aligned_cols=55 Identities=13% Similarity=0.351 Sum_probs=48.9
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL 283 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll 283 (508)
...++.++|.+ ++.+++.++++. ++++.+.+.+++++||+++ ++++|+++.+|++
T Consensus 87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~ 141 (143)
T cd04634 87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDII 141 (143)
T ss_pred hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhh
Confidence 45678899976 778999999998 9999999999999999986 7899999999987
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.018 Score=58.17 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc
Q 010540 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET 291 (508)
Q Consensus 212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~ 291 (508)
.-++.++++-...-.++++||.+ .+......+..-...++..+.+.+.+.+-+++ ..++.+|+++..+....
T Consensus 260 YV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------ 331 (386)
T COG4175 260 YVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------ 331 (386)
T ss_pred HHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc------
Confidence 34567777777788899999985 23222222222111566777777666666666 34679999998877632
Q ss_pred cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
.+..++..++.++++.+.+....+...+++ |+|
T Consensus 332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd 364 (386)
T COG4175 332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD 364 (386)
T ss_pred ----cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence 346778889999999999999998887776 556
No 195
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.56 E-value=0.024 Score=47.19 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=45.4
Q ss_pred ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
.+.++|.+ ++.+++.++++. ++++.|.+++...+||+++ ++++|+++.+|++.
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 46777865 677789999998 9999999999999999984 68999999999874
No 196
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=95.54 E-value=0.039 Score=45.43 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=46.0
Q ss_pred cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++|.+ +..+++.+.++. ++++.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus 60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence 5677765 677888999998 99999999999999999876 89999999999874
No 197
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=95.54 E-value=0.019 Score=47.85 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=42.8
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+.++.++|.+ ++.++++++++. ++++.|.+ . ...||++++ ++++|+++.+|+++
T Consensus 56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence 3567888865 677899999988 88888877 3 347888765 78999999999874
No 198
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=94.36 E-value=0.063 Score=54.64 Aligned_cols=60 Identities=17% Similarity=0.330 Sum_probs=53.6
Q ss_pred CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (508)
Q Consensus 223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~ 286 (508)
-++.++..+|++ +.+++.+.+++. .+.+.|.-+++.-+||++++ .+++|+++.+|+++.+
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l 305 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL 305 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence 366789999997 788999999998 99999999999999999976 7899999999999753
No 199
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.054 Score=57.95 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=54.2
Q ss_pred cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (508)
Q Consensus 222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~ 286 (508)
.-++..++++|.+ +++++.++++.+ |+.+.+.+++....||++++ ++++|+++..|++...
T Consensus 192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi 252 (451)
T COG2239 192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI 252 (451)
T ss_pred CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence 4577889999998 588999999988 99999999999999999976 8999999999998643
No 200
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=93.14 E-value=0.038 Score=44.74 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=26.9
Q ss_pred eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540 445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478 (508)
Q Consensus 445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 478 (508)
.|.|+|.++++++++.+|++...++++ |+|||
T Consensus 7 ~~~v~G~~~l~~l~~~~~~~l~~~~~~--Tl~G~ 38 (81)
T PF03471_consen 7 TYIVSGSTPLDDLNELLGLDLPEEDYD--TLGGL 38 (81)
T ss_dssp EEEEETTSBHHHHHHHHTS-TTTTTTS--BHHHH
T ss_pred EEEEEecCCHHHHHHHHCcCCCccchh--hHHHH
Confidence 699999999999999999987665555 56999
No 201
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=90.61 E-value=0.38 Score=50.35 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=48.9
Q ss_pred cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540 226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (508)
Q Consensus 226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~ 286 (508)
..+.+.|.+ .+.++++++++. +++..+.++++. +||++++ ++++|+|+..+++.+.
T Consensus 302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL 357 (363)
T ss_pred Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence 468888876 677899999999 999999999998 9999876 8999999999998654
No 202
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.15 E-value=0.3 Score=50.79 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=66.8
Q ss_pred cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Cccccccccc
Q 010540 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSI 298 (508)
Q Consensus 222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~ 298 (508)
.=....+.++|+++. ++.+.+.+++ ++-+.+.++.-.++||++++ ++++.++...||.+...- ....-+++|.
T Consensus 167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~yPlask~~~kqll~ 242 (503)
T KOG2550|consen 167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRDYPLASKDSTKQLLC 242 (503)
T ss_pred hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcCCCccccCcccceee
Confidence 345667899999955 7788888988 88888888888899999876 999999999999864321 1122233333
Q ss_pred ccceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAV 327 (508)
Q Consensus 299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~V 327 (508)
... |.-...=.+-+..+.+.+....+.
T Consensus 243 gAa--iGTre~dK~rl~ll~~aGvdvviL 269 (503)
T KOG2550|consen 243 GAA--IGTRDDDKERLDLLVQAGVDVVIL 269 (503)
T ss_pred eec--cccccchhHHHHHhhhcCCcEEEE
Confidence 222 222222344555666666665543
No 203
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=86.10 E-value=1.5 Score=46.54 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=48.2
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP 287 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~ 287 (508)
+.+++++|.+ +..++++++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus 336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD 393 (400)
T ss_pred CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence 3467788865 677899999999 999999987766 9999865 89999999999987653
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=74.13 E-value=9.3 Score=38.03 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----------------ccccccccccc
Q 010540 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----------------ETPVSAVSIRR 300 (508)
Q Consensus 238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----------------~~~V~dim~~~ 300 (508)
++.|.-|. + ||++.- +|+-|.++ ++++-+=+..+++..++++ ...+.+.|.+.
T Consensus 189 ivfVTHDi--d-EA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 189 IVFVTHDI--D-EALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred EEEEecCH--H-HHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 44554443 5 666542 36667764 7788888877777543321 01233333222
Q ss_pred c----eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540 301 I----PRVPSDMPLYDILNEFQKGSSHMAAVVK 329 (508)
Q Consensus 301 v----~~V~~~~~l~d~L~~m~~~~~~~a~VvD 329 (508)
. -.++......+++..+...+...+||+|
T Consensus 259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd 291 (309)
T COG1125 259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD 291 (309)
T ss_pred ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence 1 1244455556677777777777888888
No 205
>PF14163 SieB: Superinfection exclusion protein B
Probab=56.37 E-value=48 Score=29.90 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG 259 (508)
Q Consensus 208 ~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~ 259 (508)
.++++|+..+...+.-++ ..++++.++ .++..+.+.|
T Consensus 78 ~Lt~~EkavL~~~~~~~~-----------~~~~lp~~~----~~v~~L~~~g 114 (151)
T PF14163_consen 78 SLTPEEKAVLREFYIQGN-----------NTLTLPYNN----PAVKSLLQKG 114 (151)
T ss_pred hCCHHHHHHHHHHHHCCC-----------CeEEecCCC----HHHHHHHHCC
Confidence 588999998877765553 444566655 3445555555
No 206
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=54.83 E-value=12 Score=42.36 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=45.5
Q ss_pred cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCC-cEEEEeEHhHHhcc
Q 010540 224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK-NIIGLLLVKSLLTV 285 (508)
Q Consensus 224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d-~ivGiv~~kDll~~ 285 (508)
..+.|+++|+. ++.++..+.|.. |..+.+.......+|++++... .++|.|..+.|...
T Consensus 586 h~v~VE~iMV~--dv~yI~k~~Ty~-elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~l 645 (931)
T KOG0476|consen 586 HTVKVEHIMVT--DVKYITKDTTYR-ELREALQTTTLRSFPLVESKESMILLGSVARRYLTAL 645 (931)
T ss_pred eEEEeeeeccc--cceeeeccCcHH-HHHHHHHhCccceeccccCcccceeeehhHHHHHHHH
Confidence 45679999997 999999999987 6555444444899999985433 47899999998753
No 207
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=51.90 E-value=18 Score=40.09 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=45.7
Q ss_pred cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
....|.| ..+++++++++. .+...++.-|.+.+.|+... .+++|+++.+|+...
T Consensus 692 l~p~~n~--sPytV~~~mSl~-k~~~lFR~lGLRhLlVv~~~-~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 692 LHPFMNP--SPYTVPETMSLA-KAFILFRQLGLRHLLVVPKT-NRVVGILTRKDLARY 745 (762)
T ss_pred cccccCC--CCcccCcccchH-HHHHHHHHhcceeEEEecCC-CceeEEEehhhhhhH
Confidence 3456766 677899999998 89999999999999999865 678999999999854
No 208
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=51.30 E-value=19 Score=38.01 Aligned_cols=55 Identities=9% Similarity=0.231 Sum_probs=41.8
Q ss_pred ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (508)
Q Consensus 225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~ 286 (508)
+.++.+ +. +++.++++++++. +++..+.++++. +||+++ ++++|+|+..+++.+.
T Consensus 325 ~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~--~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 325 EQEVES-LE--AAPTVINPDTLMR-DVLAARHRTGGA-ILLVEN--GRIVGVIGDDNIYHAL 379 (382)
T ss_pred ccchhh-hc--ccCcccCCCCcHH-HHHHHHhcCCCC-eEEeeC--CeEEEEEeHHHHHHHH
Confidence 334555 33 2677889999999 999988877754 778764 8999999999998653
No 209
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=44.04 E-value=15 Score=39.01 Aligned_cols=94 Identities=19% Similarity=0.120 Sum_probs=51.0
Q ss_pred HHHHHHHHHhC-CCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhh
Q 010540 310 LYDILNEFQKG-SSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNR 388 (508)
Q Consensus 310 l~d~L~~m~~~-~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~ 388 (508)
+.++++.+.+. +.+..+|.++ +.|++ |.+|+. .+.+......+.-|. ..|+| +..+.++...+
T Consensus 293 ~~~~~~~l~~~~~v~v~~v~n~---VagLl--Tg~Di~-~l~~~~~~d~~liP~---------~~fld-d~t~~~~~~~l 356 (404)
T TIGR03278 293 IREIFRALGGGDLVNVVPVKKD---IACLI--TEDDLE-ELDLSEVKETVIIPG---------RAFVH-DMVAEEILKRD 356 (404)
T ss_pred HHHHHHHHhcCceEEEEEecCc---ccccc--hHHHHH-HhcCCCCCCEEEecC---------ccccc-cccHHHHHHHh
Confidence 44555555333 4777777775 99999 999999 776544444333231 22332 12223333333
Q ss_pred hcccCCCCcccccccccccccCCCceEEeechHHHHHH
Q 010540 389 LSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE 426 (508)
Q Consensus 389 ~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIlee 426 (508)
... ..++.|---. --+|++.|..|.+++++.
T Consensus 357 ~~~----v~v~~~~~~~---~~~~~~~~~~~~~~~~~~ 387 (404)
T TIGR03278 357 GVD----RIVVRGPDRL---TADGEMSGGMTREEVLEF 387 (404)
T ss_pred CCc----EEEecCCcee---eecceecccccHHHHHHH
Confidence 221 1111111110 036999999999999875
No 210
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=39.50 E-value=11 Score=30.12 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=30.6
Q ss_pred ccCCceeecCCCCCccchhhhhcccCCC-Ccccccccc-cccccCC
Q 010540 368 EKTESVVVDVDRPLSSGSMNRLSSSQRS-DSTTNGLIY-ASEDIED 411 (508)
Q Consensus 368 ~~~~~~~V~~~~~l~~~~~~~~~~~~~~-~~~i~~l~v-~~~~~E~ 411 (508)
.....|.+++++++.++++.+....+.. +.|++|+++ .+++++.
T Consensus 3 ~~~~~~~v~G~~~l~~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 3 LDDGTYIVSGSTPLDDLNELLGLDLPEEDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp ETTSEEEEETTSBHHHHHHHHTS-TTTTTTSBHHHHHHHHHTSS--
T ss_pred EcCCEEEEEecCCHHHHHHHHCcCCCccchhhHHHHHHHHcCCCCC
Confidence 3456899999999999999999987765 556666665 3344443
No 211
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=38.87 E-value=27 Score=25.66 Aligned_cols=18 Identities=33% Similarity=0.709 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010540 34 WWFVYAGISCVLVLFAGIMS 53 (508)
Q Consensus 34 ~~~~~~~ii~~lllls~~fs 53 (508)
+||+|++ ++-|++||+++
T Consensus 2 PwWvY~v--i~gI~~S~ym~ 19 (52)
T PF14147_consen 2 PWWVYFV--IAGIIFSGYMA 19 (52)
T ss_pred cchHHHH--HHHHHHHHHHH
Confidence 3566643 33556777754
No 212
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=38.63 E-value=43 Score=38.06 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=37.0
Q ss_pred ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecC
Q 010540 291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK 331 (508)
Q Consensus 291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~ 331 (508)
..|+++|++++.+|..+++..|+-+.++....+..|+||..
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~ 628 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESK 628 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCc
Confidence 46899999999999999999999999988879999999853
No 213
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=37.05 E-value=48 Score=33.20 Aligned_cols=59 Identities=24% Similarity=0.249 Sum_probs=40.3
Q ss_pred cccccccccccccce--EEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 224 TEKTAEEAMTPIEST--FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 224 ~~~~V~dIMtpr~~v--v~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
+..++.+.|.+.... -.+.....-. +++..+...+.+.+||++++ ++++|.++..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ls~~~~~~~~~~~Vvd~~-g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRGEPADGEPLLEGFVDR-DALSDFLARGRSVLPVVDED-GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhcccccccCCccccchhhH-HHHHHHHhcCCceeEEECCC-CcEeeEEEHHHHhh
Confidence 556677777653211 0111222223 67777888899999999876 89999999999874
No 214
>CHL00038 psbL photosystem II protein L
Probab=36.88 E-value=47 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=12.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Q 010540 30 FGSVWWFVYAGISCVLVLFAGIM 52 (508)
Q Consensus 30 ~~s~~~~~~~~ii~~lllls~~f 52 (508)
.-|.+|.++++ .++.+++|.+|
T Consensus 15 RTSLy~GLLli-fvl~vlfssyf 36 (38)
T CHL00038 15 RTSLYWGLLLI-FVLAVLFSNYF 36 (38)
T ss_pred hhhHHHHHHHH-HHHHHHHHHHh
Confidence 46778876543 44445555544
No 215
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=33.78 E-value=1.5e+02 Score=23.53 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=7.2
Q ss_pred HHHHHHHHHH
Q 010540 45 LVLFAGIMSG 54 (508)
Q Consensus 45 lllls~~fs~ 54 (508)
|+++||+||-
T Consensus 33 lfiisa~lSw 42 (74)
T PF15086_consen 33 LFIISAVLSW 42 (74)
T ss_pred HHHHHHHHHH
Confidence 6677888774
No 216
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=30.65 E-value=75 Score=35.44 Aligned_cols=54 Identities=11% Similarity=0.213 Sum_probs=41.2
Q ss_pred ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540 227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV 285 (508)
Q Consensus 227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~ 285 (508)
..+++|.+ .++++....+.+ -.++.+++-|.+..-|.++ +++.|+++.||+++.
T Consensus 640 ~lk~il~~--tp~tv~d~tp~~-~v~~~F~~lg~~~~~v~~~--G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 640 DLKDILDM--TPFTVTDLTPME-TVVDLFRKLGLRQILVTKN--GILLGIITKKDCLRH 693 (696)
T ss_pred CceeeccC--CcccccccCcHH-HHHHHHHhhCceEEEEccC--CeeEeeeehHHHHHh
Confidence 34566654 456677777776 7778888889988877754 899999999999864
No 217
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=30.65 E-value=59 Score=33.55 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=37.0
Q ss_pred ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540 237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR 286 (508)
Q Consensus 237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~ 286 (508)
++.+++.++++. +.+..+.+.+ ..+||++++ ++++|++....++.+.
T Consensus 336 ~~~~v~~d~~~~-~~~~~~~~~~-~p~aVvde~-~r~vG~i~~~~vl~aL 382 (386)
T COG4175 336 DVLTVDADTPLS-EILARIRQAP-CPVAVVDED-GRYVGIISRGELLEAL 382 (386)
T ss_pred cccccCccchHH-HHHHHHhcCC-CceeEEcCC-CcEEEEecHHHHHHHH
Confidence 667888888887 7777666554 368899876 8999999999988654
No 218
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=30.43 E-value=2.8e+02 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=7.9
Q ss_pred CcHHHHHHHHHHHHH
Q 010540 31 GSVWWFVYAGISCVL 45 (508)
Q Consensus 31 ~s~~~~~~~~ii~~l 45 (508)
..+.|++++++++++
T Consensus 19 ~a~GWwll~~lll~~ 33 (146)
T PF14316_consen 19 LAPGWWLLLALLLLL 33 (146)
T ss_pred ccHHHHHHHHHHHHH
Confidence 456777654444433
No 219
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=29.79 E-value=90 Score=21.22 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=11.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Q 010540 30 FGSVWWFVYAGISCVLVLFAGIM 52 (508)
Q Consensus 30 ~~s~~~~~~~~ii~~lllls~~f 52 (508)
..|-+|.+++++ ++-+++|.+|
T Consensus 14 RTSLY~GLllif-vl~vLFssyf 35 (37)
T PF02419_consen 14 RTSLYWGLLLIF-VLAVLFSSYF 35 (37)
T ss_dssp CCHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHhHHHHHHHHH-HHHHHhhhhh
Confidence 456777765433 3344555544
No 220
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=28.86 E-value=64 Score=22.04 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHH
Q 010540 29 PFGSVWWFVYAGISCVLVLFAGIM 52 (508)
Q Consensus 29 ~~~s~~~~~~~~ii~~lllls~~f 52 (508)
-.-|.+|.+++++ ++-+++|.+|
T Consensus 15 NRTSLy~GlLlif-vl~vLFssYf 37 (39)
T PRK00753 15 NRTSLYLGLLLVF-VLGILFSSYF 37 (39)
T ss_pred chhhHHHHHHHHH-HHHHHHHhhc
Confidence 3467788765433 3344555544
No 221
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.93 E-value=70 Score=35.00 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284 (508)
Q Consensus 250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~ 284 (508)
...+.+.+.|-+-++|+++ +++.|++++||+.+
T Consensus 417 ~~~~~vs~~GGTPL~V~~~--~~~~GVI~LkDivK 449 (681)
T COG2216 417 AAVDEVSRLGGTPLVVVEN--GRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHhcCCCceEEEEC--CEEEEEEEehhhcc
Confidence 3445566778888999986 79999999999985
No 222
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.23 E-value=1.1e+02 Score=25.70 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010540 40 GISCVLVLFAGIMSGLTL 57 (508)
Q Consensus 40 ~ii~~lllls~~fs~~E~ 57 (508)
++++++|++|+-.|+.|.
T Consensus 11 l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 11 LLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHhhhhhHHh
Confidence 333444455544444444
No 223
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.65 E-value=89 Score=23.85 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 010540 40 GISCVLVLFAGIMSGLTLGLMSLG 63 (508)
Q Consensus 40 ~ii~~lllls~~fs~~E~Al~s~~ 63 (508)
.+.+++++.++.||++-+|--+.+
T Consensus 8 fL~l~~~LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 8 FLALVFILSAAGFSASAMAADSSP 31 (61)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhCC
Confidence 445667788999999987754443
No 224
>PF03563 Bunya_G2: Bunyavirus glycoprotein G2; InterPro: IPR005168 Bunyavirus has three genomic segments: small (S), middle-sized (M), and large (L). The S segment encodes the nucleocapsid and a non-structural protein. The M segment codes for two glycoproteins, G1 and G2, and another non-structural protein (NSm). The L segment codes for an RNA polymerase. This entry represents the polyprotein region forming the G2 glycoprotein, which interacts with the IPR005167 from INTERPRO G1 glycoprotein [].
Probab=22.88 E-value=2.3e+02 Score=28.29 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 010540 156 WLVRILMIICYPIAYPIGKILDWV 179 (508)
Q Consensus 156 ~~~~~~~~l~~Pl~~~~~~~~~~l 179 (508)
|+.++++-+|+|++|.-+++.++-
T Consensus 210 Yi~YlliPiF~P~~~~Yg~~ynk~ 233 (285)
T PF03563_consen 210 YICYLLIPIFYPIAYLYGWLYNKS 233 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667889998888888764
No 225
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=22.54 E-value=5.8e+02 Score=23.03 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 010540 160 ILMIICYPIAYPIGKILDWV 179 (508)
Q Consensus 160 ~~~~l~~Pl~~~~~~~~~~l 179 (508)
++..+++-+.+|+.++++++
T Consensus 124 ~~l~~~~~l~~P~~~~l~~i 143 (183)
T PF01595_consen 124 PLLRVLMILLYPLVWLLSFI 143 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555666665554
No 226
>PF14044 NETI: NETI protein
Probab=21.88 E-value=98 Score=23.32 Aligned_cols=29 Identities=17% Similarity=0.546 Sum_probs=22.6
Q ss_pred EEEeCCCCchHHHHHHHHHcCCcEE-----EEeeC
Q 010540 239 FSLDVNSKLDWEAMGKILARGHSRV-----PVYSG 268 (508)
Q Consensus 239 v~v~~~~tl~~eal~~~~~~~~sr~-----PV~~~ 268 (508)
+.|..+.|++ +.++.|.+.||.-+ ||+.+
T Consensus 2 FeV~enETI~-~CL~RM~~eGY~PvrR~EkPiF~e 35 (57)
T PF14044_consen 2 FEVEENETIS-DCLARMKKEGYMPVRRIEKPIFKE 35 (57)
T ss_pred eeccCCCcHH-HHHHHHHHcCCCceeeccccceEE
Confidence 3567899999 99999999998633 66653
No 227
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=20.34 E-value=86 Score=21.28 Aligned_cols=16 Identities=6% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 010540 43 CVLVLFAGIMSGLTLG 58 (508)
Q Consensus 43 ~~lllls~~fs~~E~A 58 (508)
++|+..++.|..++.|
T Consensus 7 l~CLA~aavF~~a~va 22 (37)
T PF11131_consen 7 LICLAAAAVFTAAGVA 22 (37)
T ss_pred HHHHHHHHHHHhhccc
Confidence 4577889999999874
Done!