Query 010541
Match_columns 507
No_of_seqs 216 out of 1619
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14479 dihydroxyacetone kina 100.0 6E-143 1E-147 1162.5 54.6 485 1-500 67-566 (568)
2 KOG2426 Dihydroxyacetone kinas 100.0 8E-143 2E-147 1102.3 43.6 486 1-501 71-581 (582)
3 PTZ00375 dihydroxyacetone kina 100.0 6E-142 1E-146 1152.2 53.0 485 1-499 70-582 (584)
4 TIGR02361 dak_ATP dihydroxyace 100.0 7E-140 2E-144 1139.5 52.7 485 1-497 66-574 (574)
5 PRK14481 dihydroxyacetone kina 100.0 4E-101 9E-106 782.8 29.8 262 1-267 68-330 (331)
6 TIGR02363 dhaK1 dihydroxyaceto 100.0 6E-101 1E-105 780.9 29.6 260 1-265 69-329 (329)
7 TIGR02362 dhaK1b probable dihy 100.0 1E-100 3E-105 777.4 29.4 260 1-265 65-326 (326)
8 PRK14483 DhaKLM operon coactiv 100.0 2E-100 3E-105 777.0 29.4 260 1-265 67-329 (329)
9 PRK11468 dihydroxyacetone kina 100.0 2E-100 4E-105 780.5 29.9 266 1-268 68-355 (356)
10 PF02733 Dak1: Dak1 domain; I 100.0 1E-101 3E-106 786.3 20.6 267 1-268 52-325 (325)
11 COG2376 DAK1 Dihydroxyacetone 100.0 3.2E-75 6.9E-80 590.7 22.2 256 1-265 67-323 (323)
12 PRK10005 dihydroxyacetone kina 100.0 5E-51 1.1E-55 396.1 22.6 195 303-501 4-209 (210)
13 TIGR02365 dha_L_ycgS dihydroxy 100.0 6.4E-48 1.4E-52 370.5 20.8 182 307-496 1-193 (194)
14 PF02734 Dak2: DAK2 domain; I 100.0 6.3E-43 1.4E-47 330.8 15.5 164 331-498 1-175 (175)
15 TIGR03599 YloV DAK2 domain fus 100.0 4.2E-34 9.2E-39 310.4 21.7 185 307-503 1-196 (530)
16 COG1461 Predicted kinase relat 99.9 9.4E-25 2E-29 233.4 15.1 192 302-505 5-207 (542)
17 COG2376 DAK1 Dihydroxyacetone 99.8 3.9E-21 8.5E-26 196.1 10.0 191 311-502 27-235 (323)
18 PRK11377 dihydroxyacetone kina 87.7 11 0.00025 41.5 14.2 176 15-221 48-240 (473)
19 TIGR03599 YloV DAK2 domain fus 87.6 27 0.00058 39.2 17.2 180 3-230 336-519 (530)
20 TIGR02364 dha_pts dihydroxyace 76.6 13 0.00028 33.6 7.8 79 15-113 44-124 (125)
21 PRK09314 bifunctional 3,4-dihy 71.9 4.7 0.0001 42.6 4.2 55 4-59 252-310 (339)
22 PF00925 GTP_cyclohydro2: GTP 68.9 3.5 7.6E-05 39.0 2.4 62 4-66 51-147 (169)
23 PRK00393 ribA GTP cyclohydrola 64.7 9.9 0.00021 37.0 4.6 35 4-38 53-91 (197)
24 PRK12485 bifunctional 3,4-dihy 62.4 8.4 0.00018 41.2 3.9 56 4-59 256-340 (369)
25 TIGR00505 ribA GTP cyclohydrol 61.3 12 0.00027 36.1 4.6 63 4-67 50-147 (191)
26 cd00641 GTP_cyclohydro2 GTP cy 61.3 13 0.00027 36.0 4.6 63 4-67 52-149 (193)
27 PRK14484 phosphotransferase ma 56.9 20 0.00042 32.6 4.7 77 15-113 44-120 (124)
28 PLN02831 Bifunctional GTP cycl 52.8 14 0.0003 40.6 3.7 39 3-41 290-332 (450)
29 PF02645 DegV: Uncharacterised 50.4 54 0.0012 33.3 7.4 185 12-235 61-266 (280)
30 PF13684 Dak1_2: Dihydroxyacet 49.6 3.3E+02 0.0071 28.4 17.5 175 3-225 118-297 (313)
31 TIGR00762 DegV EDD domain prot 48.0 67 0.0015 32.5 7.6 95 12-122 60-157 (275)
32 PTZ00397 macrophage migration 45.7 39 0.00085 29.6 4.8 41 190-230 59-99 (116)
33 PRK08815 GTP cyclohydrolase; P 45.5 17 0.00038 38.9 3.0 38 4-42 224-265 (375)
34 PRK14019 bifunctional 3,4-dihy 44.2 25 0.00054 37.6 3.9 56 4-59 256-337 (367)
35 cd00615 Orn_deC_like Ornithine 42.7 58 0.0013 32.9 6.2 54 12-69 138-191 (294)
36 PRK09311 bifunctional 3,4-dihy 41.4 32 0.00069 37.3 4.2 34 4-37 257-294 (402)
37 PTZ00450 macrophage migration 38.3 43 0.00093 29.8 3.9 40 191-230 60-99 (113)
38 COG1416 Uncharacterized conser 38.0 65 0.0014 28.9 4.9 71 164-241 13-83 (112)
39 PRK05340 UDP-2,3-diacylglucosa 36.0 42 0.00092 33.1 3.9 36 5-40 37-81 (241)
40 PRK09318 bifunctional 3,4-dihy 35.9 38 0.00083 36.5 3.7 39 3-42 239-280 (387)
41 COG4175 ProV ABC-type proline/ 34.4 58 0.0013 34.6 4.6 119 89-249 10-137 (386)
42 PF02955 GSH-S_ATP: Prokaryoti 33.6 81 0.0018 30.2 5.2 58 179-237 75-159 (173)
43 PF00975 Thioesterase: Thioest 33.5 73 0.0016 30.2 5.0 75 144-234 30-105 (229)
44 COG1732 OpuBC Periplasmic glyc 32.8 89 0.0019 32.6 5.7 85 121-237 15-99 (300)
45 COG3412 Uncharacterized protei 31.9 73 0.0016 29.1 4.3 80 14-112 44-123 (129)
46 PF01187 MIF: Macrophage migra 31.0 47 0.001 29.1 3.0 40 191-230 58-97 (114)
47 PLN03065 isocitrate dehydrogen 30.5 3.4E+02 0.0075 30.3 9.9 134 23-175 325-474 (483)
48 PF03793 PASTA: PASTA domain; 30.1 87 0.0019 23.9 4.0 30 34-65 1-30 (63)
49 COG1307 DegV Uncharacterized p 28.2 4.7E+02 0.01 26.9 10.1 204 14-246 64-279 (282)
50 TIGR01854 lipid_A_lpxH UDP-2,3 27.3 78 0.0017 31.0 4.1 37 5-41 35-80 (231)
51 PF08353 DUF1727: Domain of un 26.1 77 0.0017 28.2 3.4 32 10-41 81-112 (113)
52 cd03465 URO-D_like The URO-D _ 25.3 1.6E+02 0.0034 30.2 6.0 107 12-133 206-316 (330)
53 PF02873 MurB_C: UDP-N-acetyle 25.1 96 0.0021 27.2 3.8 34 192-226 66-99 (105)
54 PRK11340 phosphodiesterase Yae 25.1 1.4E+02 0.003 30.2 5.5 55 5-59 85-144 (271)
55 PF03408 Foamy_virus_ENV: Foam 24.8 2E+02 0.0044 34.0 7.1 68 312-387 881-948 (981)
56 PF02633 Creatininase: Creatin 23.9 3.4E+02 0.0073 26.7 7.9 61 151-225 72-133 (237)
57 PRK07198 hypothetical protein; 23.7 1.1E+02 0.0024 33.2 4.6 38 3-41 246-291 (418)
58 TIGR00619 sbcd exonuclease Sbc 23.7 2.8E+02 0.0061 27.7 7.4 54 5-60 44-105 (253)
59 PRK09319 bifunctional 3,4-dihy 23.6 74 0.0016 36.0 3.4 38 3-41 261-302 (555)
60 cd07385 MPP_YkuE_C Bacillus su 23.1 1.8E+02 0.0038 27.7 5.6 54 5-58 37-92 (223)
61 KOG1526 NADP-dependent isocitr 22.9 57 0.0012 34.2 2.2 47 24-71 267-313 (422)
62 cd01612 APG12_C Ubiquitin-like 21.9 88 0.0019 26.5 2.8 34 7-43 51-84 (87)
63 COG0616 SppA Periplasmic serin 21.7 3E+02 0.0065 28.7 7.4 61 165-237 83-143 (317)
64 KOG2743 Cobalamin synthesis pr 20.2 99 0.0022 32.6 3.3 37 168-211 71-107 (391)
65 TIGR00639 PurN phosphoribosylg 20.2 1.5E+02 0.0032 28.7 4.4 48 10-62 5-55 (190)
No 1
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=5.7e-143 Score=1162.50 Aligned_cols=485 Identities=41% Similarity=0.604 Sum_probs=442.1
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
|||||||||||||||++||++|||++++++|||||||||||||||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999655568899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010541 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~ 239 (507)
+.++++++++|+++|+++ ++++++|+|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999986 68899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc-CCCccccccHHHHHHHHHHHHHHH
Q 010541 240 GFSISIMKADEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESL-GRPLQLSQQGHVLEVTIEAAAEAV 318 (507)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l 318 (507)
|||||||++||+|++|||+||++|+||..... .+... ..... . ...... ........+...+++||..+++.|
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~~~~~-~~~~~--~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~l 375 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRRGGAV-EPVEY--VEAAE-E--DDAEEPPRASKASRATAANLVAALDAVAEAL 375 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCCCCcc-cccCc--ccccc-c--ccccccccCCccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999662110 01000 00000 0 000000 011122235688999999999999
Q ss_pred HHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCC--CCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 010541 319 VNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL--NDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLK 396 (507)
Q Consensus 319 i~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~--~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~f~~~a~~l~ 396 (507)
++++++||+||+.+||||||+||++||+++.+.+++ ... .++.++|+.+++++++.||||||+|||+||+++++.++
T Consensus 376 ~~~~d~Ln~LD~~VGDGD~G~nM~~G~~ai~~~l~~-~~~~~~~~~~~l~~i~~all~~~GGtSG~Lys~~f~~~a~~l~ 454 (568)
T PRK14479 376 IDNEDELGELDAVAGDGDHGIGMARGSKAALAAARA-AVEAGAGAGSVLAAAGDAWADHAGGTSGPLWGTALRAAGKALG 454 (568)
T ss_pred HHhHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHhh-ccccCCCHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999973 332 68999999999999999999999999999999999998
Q ss_pred ccCCCCCChHHH-----------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcchhh
Q 010541 397 ASSKSGITSKQF-----------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGAESTKHMQA 465 (507)
Q Consensus 397 ~~~~~~~~~~~~-----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~gae~Tk~m~A 465 (507)
++ ++++.++| ++||+|+||||||||+|+|+++++++...++.++.++|++++++|++|+++|++|+|
T Consensus 455 ~~--~~l~~~~la~al~~g~~~v~~~G~AkpGDkTMLDaL~Pa~eal~~~~~~~~~~~~~l~~a~~aA~~gae~T~~m~A 532 (568)
T PRK14479 455 DK--DEPTAADFAAAVRAAVDAIQELGGAQVGDKTMVDALVPFADALEAAAAAGADLAEAWAAAAEAAEEGAEATADLVP 532 (568)
T ss_pred cC--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCchhhh
Confidence 75 57888887 999999999999999999999999998888899999999999999999999999999
Q ss_pred hhccccccCcccCCCCCCchHHHHHHHHHHHHHHH
Q 010541 466 QAGRSTYISPEILASVPDPGAMAAAAWYRAAALAV 500 (507)
Q Consensus 466 k~GRAsY~gers~g~~pDPGA~av~~il~al~~~~ 500 (507)
++|||+|+|||++|++ ||||+++++||++|++.+
T Consensus 533 ~~GRAsYlgers~Gv~-DPGA~~~~~il~al~~~~ 566 (568)
T PRK14479 533 RMGRARYLGERSLGTP-DAGAVSLALIFTAIAGSL 566 (568)
T ss_pred hhcccccccccccCCC-CCcHHHHHHHHHHHHHHh
Confidence 9999999999999765 999999999999998865
No 2
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-143 Score=1102.26 Aligned_cols=486 Identities=49% Similarity=0.760 Sum_probs=445.5
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~-~~~ 79 (507)
||||++||+||||||++|||+|||+|.+.+|+|+|||||||||||||||+||||++|++||+|+|+||||++++++ ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCCCCCeeEEeccccCCCCccc-c
Q 010541 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (507)
Q Consensus 80 RRG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~-~ 158 (507)
||||+||||||||+||+|++|++|+||+++++.+++|+.||||+|+||++||++|.++|+++|||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred cCCCHHHHHHHHHHHHHhc--ccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccccc
Q 010541 159 DLQPVDVVVSHVLKQILST--ETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (507)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~--~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSl 236 (507)
+.+|+++||.+||+.|+++ +|+|++|.++++||+|||||||+|.|||++++.++.++|+.+|||.|+|+|+|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 6777999999999999998 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeec---------cHHHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHH
Q 010541 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVL 307 (507)
Q Consensus 237 dm~GfSiTll~l---------d~~l~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (507)
||+||||||||. |+.+++|+|+|+++|+||.......| .+...+...... ..+.++..+.+.+.+
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~-----~~~~~~~s~~~~-~~~~~s~vt~d~~~~ 384 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVP-----TPPISSSSLEHL-ESEKKSGVTVDAQKF 384 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCC-----CCCCCCcchhhc-ccccCCCccccHHHH
Confidence 999999999999 78899999999999999976522111 111101111111 112233566789999
Q ss_pred HHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCChHHHHHH
Q 010541 308 EVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (507)
Q Consensus 308 ~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~ 386 (507)
..+|++++++|++.||.||+||+.+||||||+||.+|+++|.+++++ .++.+++.+++.+|+..++++||||||+||++
T Consensus 385 ~~~l~~~~~~ii~~Ep~lt~~D~~aGDGDCGtTl~~gaeaI~e~~k~~~~~~~~~~~~v~~is~~ie~sMGGTSG~LY~i 464 (582)
T KOG2426|consen 385 AAALKAVAEAIIESEPHLTELDTIAGDGDCGTTLVRGAEAILEALKNDKLPLDDPAQLVKDISDIIEDSMGGTSGALYSI 464 (582)
T ss_pred HHHHHHHHHHHHhcccchhHHhccccCCcchhhhHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999975 37889999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChHHH-----------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010541 387 FCKAAYAKLKASSKSGITSKQF-----------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIA 455 (507)
Q Consensus 387 ~f~~~a~~l~~~~~~~~~~~~~-----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ 455 (507)
||.++++.+++...++++...| ++||+||||||||+|+|.||++.|.. +++ +.+|+++|++
T Consensus 465 ~lsa~aqgl~~~~~~~it~~~~a~al~~aldal~KYt~Ar~G~rTMiDaL~pfve~~s~----g~d----~~~AvkaA~~ 536 (582)
T KOG2426|consen 465 FLSAAAQGLKQSGQEEITRKTWAEALKVALDALQKYTGARPGDRTMIDALQPFVETFSA----GKD----LLAAVKAAEK 536 (582)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhcC----Ccc----HHHHHHHHHH
Confidence 9999999999865578999888 99999999999999999998888754 455 4457999999
Q ss_pred HHHhCcchhhhhccccccCcccCCCCCCchHHHHHHHHHHHHHHHH
Q 010541 456 GAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 501 (507)
Q Consensus 456 gae~Tk~m~Ak~GRAsY~gers~g~~pDPGA~av~~il~al~~~~~ 501 (507)
|+|+|++|.|++|||||+++.. +.+|||||++++.|++++.++++
T Consensus 537 gAeaT~~m~A~~GRASYvsd~~-~~~PDpGA~a~aa~l~a~~~a~~ 581 (582)
T KOG2426|consen 537 GAEATAKMQAKVGRASYVSDSE-QTVPDPGAVALAAILRAIVTALK 581 (582)
T ss_pred HHHHHHhhhhhcceeeeecccc-cCCCCchHHHHHHHHHHHHHHhc
Confidence 9999999999999999999766 46889999999999999998874
No 3
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=6.3e-142 Score=1152.16 Aligned_cols=485 Identities=38% Similarity=0.587 Sum_probs=430.6
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
|||||||||||||||++||+++||+|++++|||||||||||||||||||+|+|+++||+|++|+|+||||++ ..+++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3457899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccC
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~ 160 (507)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999954489999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc--c---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccc
Q 010541 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (507)
Q Consensus 161 ~~a~~lv~~ml~~ll~~~--~---~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TS 235 (507)
+++++++++|+++|+++. + ++++++++++|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999851 1 2458889999999999999999999999999999999888 999999999999999
Q ss_pred cCCCcceEEEeeccH-HHHH--------hhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHH
Q 010541 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHV 306 (507)
Q Consensus 236 ldm~GfSiTll~ld~-~l~~--------~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (507)
|||+|||||||++|| +|++ |||+||++|+||.... +... .... . ... ... .++..+...+.
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~~~~---~~~~--~~~~--~-~~~-~~~-~~~~~~~~~~~ 377 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWATAKG---PLSA--LQLA--K-PEA-EAA-SRKAATPTNSL 377 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCCCCC---Cccc--cccc--c-ccc-ccc-CccccchhHHH
Confidence 999999999999965 5999 8888899999976211 1000 0000 0 000 000 11111012477
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCC-CCHHHHHHHHHHHHHHhcCCChHHHHH
Q 010541 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPL-NDAAETVNEIGASIRRVMGGTSGILYH 385 (507)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~-~~~~~~l~~i~~a~~~~~GGtSG~Ly~ 385 (507)
++++|+.+|+.|+++|++||+||+.+||||||+||.+||++|.+.++. ++. .++.++|..+++++++.|||||||||+
T Consensus 378 l~~~l~~~~~~l~~~e~~Lt~LD~~iGDGDhG~tm~rG~~ai~~~l~~-~~~~~~~~~~l~~ig~a~~~~vGGSSG~Lyg 456 (584)
T PTZ00375 378 LRSVLERVFETLIESENYLNELDAEVGDGDLGSGLERSSKAVLESLPY-LPLEANVRKTLTLISKAVADAFGGSSGPLYG 456 (584)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccccCCcHHHHHHHHHHHHHHHhhh-ccccCCHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999999999999999999999999999983 554 689999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCChHHH-----------HhhcCCCCCCcchhhhHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 010541 386 IFCKAAYAKLKASSKSGITSKQF-----------SKYGGATAGYRTMLDALIPAAAVLQERLS--AGIDPSTAFILSSEA 452 (507)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~~-----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~--~~~~~~~~l~~A~~a 452 (507)
+||+++++.+++......+.++| ++||+||+|||||||+|+||+++|++... ++.++.++|++|+++
T Consensus 457 ~~f~~aa~~l~~~~~g~~~~~~~a~al~a~~eaI~~rG~Ak~GDKTMlDaL~Pa~~al~~~~~~~~~~~~~~~l~~Aa~a 536 (584)
T PTZ00375 457 AFLLGGANALAEALNGGNAVDAVRAALAAGSHSIQELGGARVGDRTMVDVLIPFAEALNSCPSVNEAASSPELLKACSEE 536 (584)
T ss_pred HHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeeeeeeHHHHHHHHHHhhhcccCCCHHHHHHHHHHH
Confidence 99999999997421001234555 99999999999999999999999988764 577889999999999
Q ss_pred HHHHHHhCcchhhhhccccccCcccCCCCCCchHHHHHHHHHHHHHH
Q 010541 453 AIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALA 499 (507)
Q Consensus 453 A~~gae~Tk~m~Ak~GRAsY~gers~g~~pDPGA~av~~il~al~~~ 499 (507)
|++|+|+|++|.|++|||+|+|||++|+ |||||+++++||+++++.
T Consensus 537 A~~Gae~Tk~m~A~~GRAsylgerslG~-~DPGA~s~~~i~~al~~~ 582 (584)
T PTZ00375 537 AREAAEATALLPAKHGRSRYLEGKELGK-KDPGAELVVAWVEALASE 582 (584)
T ss_pred HHHHHHhhhccccccCccccccccccCC-CCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999965 599999999999999753
No 4
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=7e-140 Score=1139.50 Aligned_cols=485 Identities=48% Similarity=0.744 Sum_probs=429.1
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccC-CCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCC
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIA 78 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~-~~~ 78 (507)
|||||||||||||||++||++|||++++ ++|||||||||||||||||||+|+|+++||+|++|+|+||||+++.+ .++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 99999999999999999999999999999999999999999998743 478
Q ss_pred CccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCC-CCCCCeeEEeccccCCCCccc
Q 010541 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (507)
Q Consensus 79 ~RRG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg~~~~~-~l~~~e~E~G~GiHgEpG~~~ 157 (507)
||||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999976665 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHhcc--cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeccccc
Q 010541 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (507)
Q Consensus 158 ~~~~~-a~~lv~~ml~~ll~~~--~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~T 234 (507)
.++.+ +++++++|+++|++++ |++++++++|+|+|||||||+||+||||++++++.++|+++++|+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 67789999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEeeccH---HHHHhhcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccHHHHHHHH
Q 010541 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPVGVDGNRPPAKIPVPMPPSHSMKSDESLGRPLQLSQQGHVLEVTI 311 (507)
Q Consensus 235 Sldm~GfSiTll~ld~---~l~~~ldap~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (507)
||||+||||||+++|+ +|++|||+||++|+||.......+......... .... ...........+...+++||
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~l~~~l 381 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPVAAYSSKPWREKREVVS-SSAP---ELIEETAVRSYDPQLVAAIL 381 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCCCCcccccccccccccc-cccc---ccccCCCcccCCHHHHHHHH
Confidence 9999999999999999 999999999999999752111101000000000 0000 01110111224568899999
Q ss_pred HHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010541 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKA 390 (507)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~f~~ 390 (507)
+.+|+.|++++++||+||+.+||||||+||.+|+++|.+.++. .++..++.++|..+++++++.||||||+|||+||++
T Consensus 382 ~~~~~~l~~~~d~Ln~LD~~vGDGD~G~tm~~G~~ai~~~l~~~~~~~~~~~~~l~~ig~a~~~~~GGtSG~Lyg~~f~~ 461 (574)
T TIGR02361 382 ESGCAALLELEPHLTKLDTKAGDGDCGSTLARGAEAILELLKSKKLPLNDPATLLAQISDVVEGVMGGTSGALYSIFFSA 461 (574)
T ss_pred HHHHHHHHHhHHHHHHhcCCcCCCchHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999862 134568999999999999999999999999999999
Q ss_pred HHHHhhccC--CCCCChHHH-----------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 010541 391 AYAKLKASS--KSGITSKQF-----------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGA 457 (507)
Q Consensus 391 ~a~~l~~~~--~~~~~~~~~-----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ga 457 (507)
+++.+++.. .++++.++| ++||+++||||||||+|+|+++++++..+ .|++++++|++|+
T Consensus 462 ~a~~l~~~~~~~~~~~~~~~a~al~aa~eai~~~G~A~pGDkTMLDaL~Pa~~al~~~~~-------~l~~A~~aA~~ga 534 (574)
T TIGR02361 462 AAQSLKQNASKKEEITPEAWAAALKTALDALYKYTGARPGDRTMIDALQPFVEALEAGKS-------NLNAAVKAAEAGA 534 (574)
T ss_pred HHHHHhhccccccCCCHHHHHHHHHHHHHHHHHhcCCCCCCCeeeeeHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 999998621 246777777 89999999999999999999999987432 1889999999999
Q ss_pred HhCcchhhhhccccccCccc-CCCCCCchHHHHHHHHHHHH
Q 010541 458 ESTKHMQAQAGRSTYISPEI-LASVPDPGAMAAAAWYRAAA 497 (507)
Q Consensus 458 e~Tk~m~Ak~GRAsY~gers-~g~~pDPGA~av~~il~al~ 497 (507)
++|++|+|++|||+|+|+|+ .|+ |||||+++++||++|+
T Consensus 535 e~T~~m~A~~GRAsYlgers~~Gv-~DPGA~~~~~il~al~ 574 (574)
T TIGR02361 535 EATKKMKAKAGRASYVSSEALEGV-PDPGAVGLAAWLRGLA 574 (574)
T ss_pred HhChhhhhhhcccccccccccCCC-CCccHHHHHHHHHHhC
Confidence 99999999999999999998 555 5999999999999873
No 5
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=3.9e-101 Score=782.84 Aligned_cols=262 Identities=47% Similarity=0.753 Sum_probs=257.0
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.+++|
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877678899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
||+|||||||||+||||++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010541 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~ 239 (507)
++++++++++|+++|+++ ++++++|+++|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68999999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCCCC
Q 010541 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (507)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~a~~w~~ 267 (507)
||||||+++||+|++|||+||++|+|||
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~ 330 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRW 330 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCC
Confidence 9999999999999999999999999986
No 6
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=6e-101 Score=780.95 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.3
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999876668899
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
||+|||||||||+|||||+|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010541 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~ 239 (507)
+.++++++++|+++|+++ ++++++|+|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999986 68899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 010541 240 GFSISIMKADEVILKHLDATTKAPHW 265 (507)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~a~~w 265 (507)
||||||+++|++|++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 7
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=1.4e-100 Score=777.39 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=252.8
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++....||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999654445699
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
||+|||||||||+||+||+|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010541 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~ 239 (507)
+.++++++++|+++|+++ ++++++|+|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999986 68899999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEeec-cHHHHHhhcCcCCCCCC
Q 010541 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (507)
Q Consensus 240 GfSiTll~l-d~~l~~~ldap~~a~~w 265 (507)
|||||||++ |+||++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 8
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=1.6e-100 Score=776.96 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=253.8
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~-~~~~~~ 79 (507)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||+++ +.+..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 555669
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCcccc
Q 010541 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (507)
Q Consensus 80 RRG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (507)
|||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCC
Q 010541 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (507)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm 238 (507)
++.|+++++++|+++|+++ +++++||+|+|||||||+||+||||++++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999985 68899999999999999999999999999999999888 999999999999999999
Q ss_pred CcceEEEeec-cHHHHHhhcCcCCCCCC
Q 010541 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (507)
Q Consensus 239 ~GfSiTll~l-d~~l~~~ldap~~a~~w 265 (507)
+||||||+++ |++|++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 56999999999999999
No 9
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=1.8e-100 Score=780.48 Aligned_cols=266 Identities=39% Similarity=0.632 Sum_probs=258.0
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
||||||||+||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
||+|||||||||+||+|++|+||+||+++++++++|++||||+|++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcc---------------------cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhh
Q 010541 160 LQPVDVVVSHVLKQILSTE---------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQL 218 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~---------------------~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~ 218 (507)
+.|+++++++|+++|+++. |. +++++||+|+|||||||+||+||||++++++.++|++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~ 306 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTK-QPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQ 306 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhcccccccccccccccc-CCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 22 4888999999999999999999999999999999988
Q ss_pred hcCCeEEEeeecccccccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 010541 219 EHGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (507)
Q Consensus 219 ~~~i~v~r~~~G~~~TSldm~GfSiTll~ld~~l~~~ldap~~a~~w~~~ 268 (507)
+ ||+|+|+|+|+|||||||+|||||||++||++++|||+||++|+|+|+
T Consensus 307 ~-gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 307 A-GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred C-CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 8 999999999999999999999999999999999999999999999764
No 10
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=1.4e-101 Score=786.29 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.2
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~-~~ 79 (507)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998775 99
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCC-CCCCCCCCCCeeEEeccccCCCCcccc
Q 010541 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (507)
Q Consensus 80 RRG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg-~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (507)
|||+||+||||||+||+||+|+||+||++++++++++++||||+|++||+|| ++++|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 789999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHhcc---cCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeecccc
Q 010541 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (507)
Q Consensus 159 ~~~~-a~~lv~~ml~~ll~~~---~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L-~~~~~i~v~r~~~G~~~ 233 (507)
++.+ +++++++|+++|+++. |+|++++++|+++|||||||+||+||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 67889999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEeeccHHHHHhhcCcCCCCCCCCC
Q 010541 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (507)
Q Consensus 234 TSldm~GfSiTll~ld~~l~~~ldap~~a~~w~~~ 268 (507)
|||||+|||||||++|+++++|||+||++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999874
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-75 Score=590.68 Aligned_cols=256 Identities=45% Similarity=0.719 Sum_probs=248.4
Q ss_pred CcceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCCC
Q 010541 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIAG 79 (507)
Q Consensus 1 mL~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~-~~~~ 79 (507)
||+|+++|++|+||+++||+++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|.|||++.++. ..++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998875 4799
Q ss_pred ccccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 80 RRG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
|||++|++|||||+||+|++|+||+++.+++++++++++|+||+|++|++|+... |++++||||+|+|||||||++|++
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr-f~~~~gE~elG~gihGe~g~~~~~ 225 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR-ASLGLGERSLGHGIHGEPGVRREI 225 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc-cccCCCCEeeccccCCCCcchHHh
Confidence 9999999999999999999999999999999999999999999999999999444 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010541 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~ 239 (507)
++++++++++|+++|+++ ++.+ |+|+|||||||+||++|||++++.|.++|+++ ||+|+|.++|+|||||||+
T Consensus 226 l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m~ 298 (323)
T COG2376 226 LKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDMA 298 (323)
T ss_pred HHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceecccccC
Confidence 999999999999999986 5667 99999999999999999999999999999999 9999999999999999999
Q ss_pred cceEEEeeccHHHHHhhcCcCCCCCC
Q 010541 240 GFSISIMKADEVILKHLDATTKAPHW 265 (507)
Q Consensus 240 GfSiTll~ld~~l~~~ldap~~a~~w 265 (507)
||||||+++|++|++|||+||++ .|
T Consensus 299 G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 299 GFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 99999999999999999999999 55
No 12
>PRK10005 dihydroxyacetone kinase subunit DhaL; Provisional
Probab=100.00 E-value=5e-51 Score=396.07 Aligned_cols=195 Identities=26% Similarity=0.367 Sum_probs=183.5
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCChHH
Q 010541 303 QGHVLEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGI 382 (507)
Q Consensus 303 ~~~~~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~ 382 (507)
+...+++||..+++.|++++++||+||+.+||||||+||.+||++|.+.++ ..+..++.++|..+++++++.|||||||
T Consensus 4 ~~~~~~~~l~~~~~~l~~~~~~Lt~lD~~iGDGD~G~~m~~G~~av~~~l~-~~~~~d~~~~l~~~g~~~~~~~GGtsG~ 82 (210)
T PRK10005 4 SRTQIVNWLTRCGDIFTEESDYLTGLDREIGDADHGLNMNRGFSKVVEKLP-AIADKDIGFILKNTGMTLLSSVGGASGP 82 (210)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhccccCccHHHHHHHHHHHHHHHhh-ccccCCHHHHHHHHHHHHHHHcCCccHH
Confidence 456789999999999999999999999999999999999999999999998 3666799999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCChHHH-----------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010541 383 LYHIFCKAAYAKLKASSKSGITSKQF-----------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSE 451 (507)
Q Consensus 383 Ly~~~f~~~a~~l~~~~~~~~~~~~~-----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~ 451 (507)
||++||+++++.++++ ++++.++| ++||+|+||||||||+|+|++++|++...++.++.++|+++++
T Consensus 83 Lyg~~f~~~~~~l~~~--~~~~~~~~~~al~~~~~~i~~~G~A~~GdkTmlDaL~Pa~~al~~~~~~~~~~~~~l~~a~~ 160 (210)
T PRK10005 83 LYGTFFIRAAQATQAR--QSLTLEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPAALNAAVS 160 (210)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCchhHhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999875 57887777 9999999999999999999999999988888899999999999
Q ss_pred HHHHHHHhCcchhhhhccccccCcccCCCCCCchHHHHHHHHHHHHHHHH
Q 010541 452 AAIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVK 501 (507)
Q Consensus 452 aA~~gae~Tk~m~Ak~GRAsY~gers~g~~pDPGA~av~~il~al~~~~~ 501 (507)
+|++|+++|++|+|++|||+|+|||++|+ |||||+++++||+++++.++
T Consensus 161 aA~~gae~T~~m~A~~GRAsy~gers~G~-~DPGA~s~~~i~~al~~~~~ 209 (210)
T PRK10005 161 IAESAAQSTITMQARKGRASYLGERSIGH-QDPGATSVMFMMQALALAAK 209 (210)
T ss_pred HHHHHHHHHhhcccccCchhhhccccCCC-CCcCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999966 59999999999999987654
No 13
>TIGR02365 dha_L_ycgS dihydroxyacetone kinase, phosphoprotein-dependent, L subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the subunit homologous to the E. coli YcgS subunit.
Probab=100.00 E-value=6.4e-48 Score=370.49 Aligned_cols=182 Identities=29% Similarity=0.452 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCChHHHHHH
Q 010541 307 LEVTIEAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHI 386 (507)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~ 386 (507)
+++||..+++.|++++++||+||++|||||||+||.+|++++.+.++. .+..++.++|..++++++..+|||||||||+
T Consensus 1 ~~~~~~~~~~~l~~~~~~L~~LD~~vGDGD~G~nm~~g~~ai~~~l~~-~~~~~~~~~l~~~~~~~~~~~gGtSG~l~~~ 79 (194)
T TIGR02365 1 ILNWLKNCGDLIIENKEYLTELDRAIGDGDHGINMARGFSEVKEKLDA-FKDKTIGEILKNTGMTLISKVGGASGPLYGT 79 (194)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 368999999999999999999999999999999999999999999973 5567999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChHHH-----------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010541 387 FCKAAYAKLKASSKSGITSKQF-----------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIA 455 (507)
Q Consensus 387 ~f~~~a~~l~~~~~~~~~~~~~-----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ 455 (507)
||+++++.++++ ++++..+| ++||+++||||||||+|+|+++++++.. ++.++|++++++|++
T Consensus 80 ~f~~~~~~l~~~--~~~~~~~~~~al~~a~~~i~~~g~a~~GdkTmlD~l~pa~~al~~~~----~~~~~l~~a~~aA~~ 153 (194)
T TIGR02365 80 AFLKASKALKDD--EILDAEDLAEILQAGLEGIQSRGKATPGEKTMVDVWAPVVEALRKAA----DEPDALAAAREAAEQ 153 (194)
T ss_pred HHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 999999999875 57888887 7899999999999999999999998753 889999999999999
Q ss_pred HHHhCcchhhhhccccccCcccCCCCCCchHHHHHHHHHHH
Q 010541 456 GAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAA 496 (507)
Q Consensus 456 gae~Tk~m~Ak~GRAsY~gers~g~~pDPGA~av~~il~al 496 (507)
++++|++|+|++|||+|+|||++|+ |||||+++++||++|
T Consensus 154 g~e~T~~m~a~~GRA~y~ge~s~G~-~DpGA~~~~~~l~al 193 (194)
T TIGR02365 154 GAEATKDMQATKGRASYLGERSIGH-IDPGATSSYYLFQAL 193 (194)
T ss_pred HHHhcccchhccCccccccccccCC-CCccHHHHHHHHHHh
Confidence 9999999999999999999999965 599999999999987
No 14
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=100.00 E-value=6.3e-43 Score=330.82 Aligned_cols=164 Identities=40% Similarity=0.563 Sum_probs=142.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccCCCCCChHHH--
Q 010541 331 KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIFCKAAYAKLKASSKSGITSKQF-- 408 (507)
Q Consensus 331 ~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~f~~~a~~l~~~~~~~~~~~~~-- 408 (507)
+|||||||+||++++++|++.+++..+..++.++|..++++++..+|||||+||++||+++++.++++ ++++.++|
T Consensus 1 ~vGDGD~G~nm~~~~~ai~~~l~~~~~~~~~~~~l~~~~~~~~~~~gGssG~L~~~~f~~~a~~l~~~--~~~~~~~~~~ 78 (175)
T PF02734_consen 1 PVGDGDHGTNMARGARAIKEALDDLPPEDDPGKLLKAIAMALLSGAGGSSGPLYSQFFMGAAKALKGK--EELDAEDLAE 78 (175)
T ss_dssp CTSSS-HHHHHHHHHHHHHHHHHCCSCTSSHHHHHHHHHHHHHHHT-CTHHHHHHHHHHHHHHHCHTT--SECCHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHhccC--CCCCHHHHHH
Confidence 68999999999999999999998422678999999999999999999999999999999999999876 67888888
Q ss_pred ---------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcchhhhhccccccCcccCC
Q 010541 409 ---------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIAGAESTKHMQAQAGRSTYISPEILA 479 (507)
Q Consensus 409 ---------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~gae~Tk~m~Ak~GRAsY~gers~g 479 (507)
++||+++||||||||+|+|++++|++..+ +.++.++|++++++|++|+++|++|++++|||+|++||++|
T Consensus 79 a~~~~~~~i~~~g~a~~GdkTmlD~L~pa~~al~~~~~-~~~~~~~l~~a~~aA~~g~e~T~~~~a~~GRAsy~~e~s~g 157 (175)
T PF02734_consen 79 AFEAALEAIQARGGAKPGDKTMLDALIPAAEALEEAKD-GKSLAEALEAAAEAAEEGAEATKDMLAKLGRASYLGERSIG 157 (175)
T ss_dssp HHHHHHHHHHHHH---TTSSSTHHHHHHHHHHHHCCCC-T--HHHHHHHHHHHHHHHHHHHCCS---SSGGGGGGGGGTT
T ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHhccccchhhhhccccCC
Confidence 89999999999999999999999998665 78999999999999999999999999999999999999996
Q ss_pred CCCCchHHHHHHHHHHHHH
Q 010541 480 SVPDPGAMAAAAWYRAAAL 498 (507)
Q Consensus 480 ~~pDPGA~av~~il~al~~ 498 (507)
++ ||||+++++||++|++
T Consensus 158 ~~-DpGA~~~~~~~~~l~~ 175 (175)
T PF02734_consen 158 VV-DPGAVAVALILEALAE 175 (175)
T ss_dssp S---HHHHHHHHHHHHHHT
T ss_pred CC-CccHHHHHHHHHHhhC
Confidence 55 9999999999999974
No 15
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=100.00 E-value=4.2e-34 Score=310.43 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCChHHHHH
Q 010541 307 LEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (507)
Q Consensus 307 ~~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~ 385 (507)
|++|+..+++.|++++++||+||+ +|||||||+||.++++++.+.++ ..+..++.+++..+++.++..+|||||+|||
T Consensus 1 ~~~~l~~~a~~l~~~~~~Ln~LdvfpVgDGDtGtNM~~t~~a~~~~l~-~~~~~~~~~~~~~~a~~~l~garGnSGvIls 79 (530)
T TIGR03599 1 LADMIRSGANNLENNAEEINALNVFPVPDGDTGTNMLLTMTSAVKEIE-KLEEGSVGEVAKALAKGLLMGARGNSGVILS 79 (530)
T ss_pred CHHHHHHHHHHHHHhHHHHHHhcCCccCCcChHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 478999999999999999999999 89999999999999999999998 3566789999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCChHHH----------HhhcCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010541 386 IFCKAAYAKLKASSKSGITSKQF----------SKYGGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSSEAAIA 455 (507)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~~~~~~----------~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~~aA~~ 455 (507)
+||+++++.++++ ++++..+| ......+||||||||+|+|+++++++...++.++.++|++++++|++
T Consensus 80 q~f~g~a~~l~~~--~~~~~~~l~~al~~a~~~a~~av~~pgegTmLdvl~~aaea~~~~~~~~~~~~e~l~~a~~aA~~ 157 (530)
T TIGR03599 80 QIFRGFAKALEDK--EELDAEDLAAAFQEAVETAYKAVMKPVEGTILTVLREAAEAAEKAAEEGDDLEEVMEAAVEAAEK 157 (530)
T ss_pred HHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999875 67888887 12235679999999999999999998877788999999999999999
Q ss_pred HHHhCcchhhhhccccccCcccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010541 456 GAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVKDM 503 (507)
Q Consensus 456 gae~Tk~m~Ak~GRAsY~gers~g~~pDPGA~av~~il~al~~~~~~~ 503 (507)
++++|++|+|+++ +.|+ +||||+++++||++|.+.+.+.
T Consensus 158 al~~T~~mla~lk--------~~Gv-vD~Ga~gl~~ile~l~~~l~g~ 196 (530)
T TIGR03599 158 ALARTPELLPVLK--------EAGV-VDSGGQGLVVILEGMLAALTGE 196 (530)
T ss_pred HHHhChhhhhhhc--------cCCC-CCCcHHHHHHHHHHHHHHhcCC
Confidence 9999999999994 3455 5999999999999999988764
No 16
>COG1461 Predicted kinase related to dihydroxyacetone kinase [General function prediction only]
Probab=99.92 E-value=9.4e-25 Score=233.38 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=175.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhHHhhhhccC-CCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCCh
Q 010541 302 QQGHVLEVTIEAAAEAVVNLRDRLNEWDS-KVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTS 380 (507)
Q Consensus 302 ~~~~~~~~~l~~~~~~li~~e~~Ln~LD~-~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtS 380 (507)
.+...|.+|+..+|+.|.++++++|.|+. ||+|||+|+||...++.+.+.+++ .+..++..+.+.++..++...+|+|
T Consensus 5 i~~~~~~~m~~~ga~~l~~~~~~vN~LNVFPVPDGDTGTNM~~Tm~~~~~~~~~-~~~~~~~~l~~~~s~g~LmGARGNS 83 (542)
T COG1461 5 IDGSLFAEMIIAGANNLSKNADEVNALNVFPVPDGDTGTNMSMTMTSAIKELEN-LKSSSIGELAKILSKGLLMGARGNS 83 (542)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCcccHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhhhccCcc
Confidence 46778999999999999999999999999 999999999999999999999984 5668899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCChHHH---------Hhh-cCCCCCCcchhhhHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010541 381 GILYHIFCKAAYAKLKASSKSGITSKQF---------SKY-GGATAGYRTMLDALIPAAAVLQERLSAGIDPSTAFILSS 450 (507)
Q Consensus 381 G~Ly~~~f~~~a~~l~~~~~~~~~~~~~---------~~~-G~A~~GDkTMlDaL~Pa~~al~~~~~~~~~~~~~l~~A~ 450 (507)
|+|+|++|++++....++ .+++.+++ ..| ...+|.++|||.++.-+++++....++..++.+++.+|+
T Consensus 84 GVIlSQilrGf~~~~~~~--~ei~~~~la~Af~~ave~AYkAVmkPVEGTILTV~R~~ae~~~~~~~~~~~~~~~~~~a~ 161 (542)
T COG1461 84 GVILSQILRGFAAAIADK--EEIDIEDLAKAFQRAVEVAYKAVMKPVEGTILTVIRSAAEAAKKKAKNHDDFEKLMEAAV 161 (542)
T ss_pred hhhHHHHHHHHHHhcccc--cccCHHHHHHHHHHHHHHHHHHhcCCcCceEEEehHHHHHHHHhhhccchhHHHHHHHHH
Confidence 999999999999998876 68999887 333 467899999999999999999987777889999999999
Q ss_pred HHHHHHHHhCcchhhhhccccccCcccCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 010541 451 EAAIAGAESTKHMQAQAGRSTYISPEILASVPDPGAMAAAAWYRAAALAVKDMYQ 505 (507)
Q Consensus 451 ~aA~~gae~Tk~m~Ak~GRAsY~gers~g~~pDPGA~av~~il~al~~~~~~~~~ 505 (507)
++|+++.+.|.+|+|.+-.+ |.+ |+|+.++++|+++|.+++++.+.
T Consensus 162 ~~A~~aL~kTP~~LpvLKea--------GVV-DSGg~Gl~~ileG~~~a~~g~~~ 207 (542)
T COG1461 162 KAAEKALEKTPEMLPVLKEA--------GVV-DSGGKGLVYILEGFLSALTGEPV 207 (542)
T ss_pred HHHHHHHHhCHHHHHHHHHc--------Cee-cCCCceEEehHHHHHHHhcCCCc
Confidence 99999999999999999544 666 99999999999999999987543
No 17
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.9e-21 Score=196.07 Aligned_cols=191 Identities=18% Similarity=0.130 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhHHhhhh--ccCCCCCCchhHHHH--HHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHHHhcCCChHHHHH
Q 010541 311 IEAAAEAVVNLRDRLNE--WDSKVGDGDCGSTMY--RGATAILEDKKK-YYPLNDAAETVNEIGASIRRVMGGTSGILYH 385 (507)
Q Consensus 311 l~~~~~~li~~e~~Ln~--LD~~vGDGD~G~tm~--~ga~ai~~~l~~-~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~ 385 (507)
+..+....+.+++++++ +|..+||||||.||+ +|+..+.+++.. .+.+.++.++|..++++.....|+.||++|+
T Consensus 27 ~~~i~~~~~~~r~~l~~kV~dvsgGgsgHep~~ag~vG~gml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~ 106 (323)
T COG2376 27 LDLIEENGIANREYLSEKVLDVSGGGSGHEPNMAGYVGFGMLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYG 106 (323)
T ss_pred HHhcccchhhhcccCcccceeeeecCCccchhhhccccHHHHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchH
Confidence 33333444589999999 999999999999999 999999999874 2334569999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCC---------ChHHHHhhcCCCCCCcchhhhHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 010541 386 IFCKAAYAKLKASSKSGI---------TSKQFSKYGGATAGYRTMLDALIPAAAVLQERLSA--GIDPSTAFILSSEAAI 454 (507)
Q Consensus 386 ~~f~~~a~~l~~~~~~~~---------~~~~~~~~G~A~~GDkTMlDaL~Pa~~al~~~~~~--~~~~~~~l~~A~~aA~ 454 (507)
..|+.++.+.+......+ +.+..+++|++++|+|||.|+|+|.++.+...... ++....+++...+++.
T Consensus 107 gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s 186 (323)
T COG2376 107 GDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEGRRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAAS 186 (323)
T ss_pred HHHHHHHHHHhhhhhcCCceEEEEeeccccccccccccccCCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHH
Confidence 999999999875311111 11112888999999999999999999999765432 3455567778889999
Q ss_pred HHHHhCcchhhhhccccc-cCcccCCCCCCchHHHHHH-HHHHHHHHHHH
Q 010541 455 AGAESTKHMQAQAGRSTY-ISPEILASVPDPGAMAAAA-WYRAAALAVKD 502 (507)
Q Consensus 455 ~gae~Tk~m~Ak~GRAsY-~gers~g~~pDPGA~av~~-il~al~~~~~~ 502 (507)
.|++.|+.+.|..||++| .||+++|+. |||+.++.+ +|+.+.+.+..
T Consensus 187 ~Gv~lt~~~vp~~Grf~~~~gE~elG~g-ihGe~g~~~~~l~s~~e~~~e 235 (323)
T COG2376 187 IGVALTPCTVPTKGRASLGLGERSLGHG-IHGEPGVRREILKSADELAKE 235 (323)
T ss_pred HHHhcCcccccccCccccCCCCEeeccc-cCCCCcchHHhHHhHHHHHHH
Confidence 999999999999999999 999999887 999999999 99998887665
No 18
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=87.67 E-value=11 Score=41.51 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=99.9
Q ss_pred CHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 010541 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (507)
Q Consensus 15 s~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v~v~KiaG 94 (507)
++..|.+||+.+.++.|||+++= ---=+||-+||.|+...+ .+-++.+ .| .| .+ =|++ .|-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~D-lGSa~~~~e~a~e~~~~~-~~~~v~~-~~----ap---lV-----Eg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMMD-MGSALLSAETALELLDPE-IAAKVRL-CA----AP---LV-----EGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEEe-cchHHhHHHHHHHhhccc-ccceEEE-ec----Cc---hH-----hHHH----HHH
Confidence 56899999999999999988875 445689999999998644 2223222 22 12 11 1222 244
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-ccceeccccccCCC-CCCCCCCCCeeEEeccccCCCCcccccCCCHHHHHHHHHH
Q 010541 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPGQ-VTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLK 172 (507)
Q Consensus 95 A~A~~G~~l~ev~~~~~~~~~~~~-t~gval~~c~~Pg~-~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~ 172 (507)
.+|..|.+|++|.+.++.+...-. .+|... ..|.. .+.-..+.+..+.=+-|.++-|..-.| +..+++..-+
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHARP---Aa~lv~~a~~ 182 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHVRP---ASRLVYTLST 182 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcHhH---HHHHHHHHhh
Confidence 577899999999999998765433 333322 11111 111122446666666677777765433 2233332222
Q ss_pred HH----Hh-cc-----cC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 010541 173 QI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (507)
Q Consensus 173 ~l----l~-~~-----~~-----~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~ 221 (507)
+= +. .. ++ -+..+.|+++.+.++|= . |.- ....+.+++++.+|
T Consensus 183 f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~----D-e~~-Al~~l~~l~~~~fg 240 (473)
T PRK11377 183 FNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGP----E-AEE-ALIAFRQLAEDNFG 240 (473)
T ss_pred CCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCc----C-HHH-HHHHHHHHHHhccC
Confidence 10 00 00 00 13456789999999983 2 222 22555566655544
No 19
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=87.58 E-value=27 Score=39.18 Aligned_cols=180 Identities=23% Similarity=0.237 Sum_probs=116.2
Q ss_pred ceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCcc
Q 010541 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRR 81 (507)
Q Consensus 3 ~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~-G~~v~~v~v~DDva~~~~~~~~~RR 81 (507)
+..++|.==.-||+.+|++||+.++... |+++-+|. |.=||+|+|... +.+|.+|. .+ .=-.
T Consensus 336 ~~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn~-----nii~aA~qa~~~~~~~v~vvp---------T~--s~~q 398 (530)
T TIGR03599 336 DVVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNNK-----NIILAAEQAAELADKNVVVIP---------TK--TIVQ 398 (530)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCCc-----cHHHHHHHHHHHhCCcEEEEe---------CC--CHHH
Confidence 3455665434799999999999987765 77777773 888999998764 44444432 12 1223
Q ss_pred ccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceec--cccccCCCCCCCCCCCCeeEEeccccCCCCccccc
Q 010541 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL--SVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (507)
Q Consensus 82 G~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval--~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~ 159 (507)
|++.. ++=+...++++-.+.-..+..+++|.-|.. ..-++.+ ..+.+|+. |||-+..=+..
T Consensus 399 giaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~-- 461 (530)
T TIGR03599 399 GLAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAV-- 461 (530)
T ss_pred HHHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEe--
Confidence 33321 122778899999999999999998876632 2222232 22333333 44433221111
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeec
Q 010541 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (507)
Q Consensus 160 ~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~-~i~v~r~~~G 230 (507)
=++..+.+..++++|++ ++.+++-++-|=+.+.. ..+.+.++++++| ++.+.-.+-|
T Consensus 462 ~~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 462 GKDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred cCCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 23678889999999865 46788888888777665 4567777888877 7888765554
No 20
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=76.55 E-value=13 Score=33.65 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhccC-CCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 010541 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (507)
Q Consensus 15 s~~~i~~ai~~~~~-~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v~v~Kia 93 (507)
++++|.++|+.+.+ +.|||+++== -|=+||..+|.++.+.+.. +.|..-| . -++.-=++
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n-l----------------Plvega~~ 103 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD-A----------------PLVEGAFA 103 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec-h----------------hHHHHHHH
Confidence 57889999999966 8899888765 8899999999999865533 3232222 1 12333333
Q ss_pred hH-HHHcCCCHHHHHHHHHHH
Q 010541 94 GA-AAAAGLSLADVAAEAKRA 113 (507)
Q Consensus 94 GA-~A~~G~~l~ev~~~~~~~ 113 (507)
.| .+..|.||+||.+.++.+
T Consensus 104 aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 104 AAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHcCCCCHHHHHHHHHhc
Confidence 33 456899999999888753
No 21
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=71.92 E-value=4.7 Score=42.60 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=44.2
Q ss_pred eeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeecccc----ccccHHHHHHHHHhcCCc
Q 010541 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK 59 (507)
Q Consensus 4 aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtG----D~lnFg~A~e~a~~~G~~ 59 (507)
.+..||+|+|..-.|+-.|++.+....|||+..- ..| |-=+||+++++.+.-|++
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYLr-qegr~an~~RdygigaqIL~dLGi~ 310 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFLN-TESKENNQVKDYGIGAQILKYLGIK 310 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCcccccchhHHHHHHHHCCCC
Confidence 3567999999988999999999865449987553 333 578999999999999975
No 22
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=68.92 E-value=3.5 Score=39.04 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=38.1
Q ss_pred eeccCCCCCC---CCHHHHHHHHHhcc-CCCCeEEEeec-------------------------------cccccccHHH
Q 010541 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (507)
Q Consensus 4 aav~G~vFaS---Ps~~~i~~ai~~~~-~~~Gvl~iv~N-------------------------------YtGD~lnFg~ 48 (507)
.++.||+|-| ....|+-.|++.+. .+.|||+.+.+ +..|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 4567999998 66788888998886 57799999831 1256678999
Q ss_pred HHHHHHhcCCcEEEEEec
Q 010541 49 AAEQAKSEGYKVEIVIVG 66 (507)
Q Consensus 49 A~e~a~~~G~~v~~v~v~ 66 (507)
+++..+.-|++ +|.+.+
T Consensus 131 gaqIL~dLGV~-~~rLLt 147 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLLT 147 (169)
T ss_dssp HHHHHHHTT---SEEEE-
T ss_pred HHHHHHHcCCC-EEEECC
Confidence 99999998886 444443
No 23
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=64.66 E-value=9.9 Score=36.97 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.1
Q ss_pred eeccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeec
Q 010541 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTN 38 (507)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~N 38 (507)
.+..||||.|... .|+..|++.+. .+.|||+.+.+
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~~ 91 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLRQ 91 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcC
Confidence 3567899987633 67888999976 56699887743
No 24
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=62.37 E-value=8.4 Score=41.20 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=39.1
Q ss_pred eeccCCCCCCC----CHHHHHHHHHhcc-CCCCeEEEeecccc------------------------ccccHHHHHHHHH
Q 010541 4 AAICGDVFASP----PVDSILAGIHAVT-GPMGCLLIVTNYTG------------------------DRLNFGLAAEQAK 54 (507)
Q Consensus 4 aav~G~vFaSP----s~~~i~~ai~~~~-~~~Gvl~iv~NYtG------------------------D~lnFg~A~e~a~ 54 (507)
.+..||||-|. .-.|...|++.+. .+.|||+...|-.| |--+||+|+++.+
T Consensus 256 ecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqILr 335 (369)
T PRK12485 256 IDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQILQ 335 (369)
T ss_pred ccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHHH
Confidence 46789999884 3568999999976 45699886653222 0116788888888
Q ss_pred hcCCc
Q 010541 55 SEGYK 59 (507)
Q Consensus 55 ~~G~~ 59 (507)
.-|++
T Consensus 336 ~LGV~ 340 (369)
T PRK12485 336 DLGVG 340 (369)
T ss_pred HcCCC
Confidence 88864
No 25
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=61.33 E-value=12 Score=36.08 Aligned_cols=63 Identities=21% Similarity=0.350 Sum_probs=41.6
Q ss_pred eeccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEeecc-cc------------------------------ccccHHH
Q 010541 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNY-TG------------------------------DRLNFGL 48 (507)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~~~-~~~Gvl~iv~NY-tG------------------------------D~lnFg~ 48 (507)
.+..||||.|.. ..|+..|++.+. .+.|||+.+..= .| |.=+||+
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~~~~~~~~l~~k~~~~~~~~~~~~~~~a~~~~~~~~d~R~yGi 129 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLRQEGRGIGLINKLRAYALQDKGYDTVQANLMLGFPADERDFSL 129 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEECCCCcchhHHHHHHHHhhhhcCCChhhhhhhccCcccceehhH
Confidence 356789998753 378888999875 667998877521 11 2356777
Q ss_pred HHHHHHhcCCcEEEEEecc
Q 010541 49 AAEQAKSEGYKVEIVIVGD 67 (507)
Q Consensus 49 A~e~a~~~G~~v~~v~v~D 67 (507)
+++..+.-|++ +|.+.+.
T Consensus 130 GAQIL~dLGV~-~~rLLtn 147 (191)
T TIGR00505 130 CADILEDLGVK-KVRLLTN 147 (191)
T ss_pred HHHHHHHcCCC-EEEECCC
Confidence 77777777765 4555443
No 26
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=61.31 E-value=13 Score=36.03 Aligned_cols=63 Identities=25% Similarity=0.449 Sum_probs=41.8
Q ss_pred eeccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeecc-cc------------------------------ccccHHH
Q 010541 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNY-TG------------------------------DRLNFGL 48 (507)
Q Consensus 4 aav~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~NY-tG------------------------------D~lnFg~ 48 (507)
.+..+|||.+... .|+..|++.+. .+.|||+++.+= .| |.=+||+
T Consensus 52 ~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~d~R~yGi 131 (193)
T cd00641 52 ECLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLRQEGRGIGLANKLRAYALQDQGLDTVEANEALGFPADARDYGL 131 (193)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEECCCCcchhHHHHHHHHhhhhcCCChhhhhhhcCCCccccchHH
Confidence 3567899986533 67888999976 567998877522 11 2356777
Q ss_pred HHHHHHhcCCcEEEEEecc
Q 010541 49 AAEQAKSEGYKVEIVIVGD 67 (507)
Q Consensus 49 A~e~a~~~G~~v~~v~v~D 67 (507)
+++..+.-|++ +|.+.+.
T Consensus 132 GAQIL~dLGv~-~mrLLs~ 149 (193)
T cd00641 132 AAQILRDLGIK-SVRLLTN 149 (193)
T ss_pred HHHHHHHcCCC-eEEECCC
Confidence 77777777765 4544443
No 27
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=56.89 E-value=20 Score=32.59 Aligned_cols=77 Identities=30% Similarity=0.368 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHHh
Q 010541 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (507)
Q Consensus 15 s~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v~v~KiaG 94 (507)
+.++|.++|+.+++ .|||+++== -|=.+|-.+|.|+...+ .+|++ .| . | .+ =|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~~---~d-a---P---lV-----EGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKIII---ID-A---P---IV-----EGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEEE---EC-C---c---HH-----HHHH----HHH
Confidence 57899999999999 999999876 89999999999999655 34443 33 2 2 11 1222 234
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 010541 95 AAAAAGLSLADVAAEAKRA 113 (507)
Q Consensus 95 A~A~~G~~l~ev~~~~~~~ 113 (507)
..|..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 5678899999999988864
No 28
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=52.85 E-value=14 Score=40.60 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=28.6
Q ss_pred ceeccCCCCCCCCH---HHHHHHHHhcc-CCCCeEEEeecccc
Q 010541 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (507)
Q Consensus 3 ~aav~G~vFaSPs~---~~i~~ai~~~~-~~~Gvl~iv~NYtG 41 (507)
+.+..||||-|..- .|+-.|++.+. .+.|||+.+-|-.|
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qeg 332 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEG 332 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCc
Confidence 35678999998643 68888999976 56699887763343
No 29
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=50.45 E-value=54 Score=33.29 Aligned_cols=185 Identities=15% Similarity=0.130 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHh-ccCCCC-eEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhh
Q 010541 12 ASPPVDSILAGIHA-VTGPMG-CLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (507)
Q Consensus 12 aSPs~~~i~~ai~~-~~~~~G-vl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v 87 (507)
+.||+.++.+..+. ...+.- ||+|- ...+|=-=|.-+|+++. .+.+|.+ + | -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V--i-D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV--I-D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE--E-E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE--E-e-----------CCCcchhhh
Confidence 35889999999987 665544 66664 34556555666666665 3444433 2 2 233445666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceecc------ccccCC----------CCCCCCCCCCeeEEeccccC
Q 010541 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (507)
Q Consensus 88 ~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~------~c~~Pg----------~~~~~~l~~~e~E~G~GiHg 151 (507)
++..-|-.++++|.|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66667779999999999999999999999887643211 000110 01222232333322
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeec
Q 010541 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (507)
Q Consensus 152 EpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i-~v~r~~~G 230 (507)
..+..+.+..++.|++.+... .. ......+.+...- .. |. +.++.+.|+++++. .+....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~-~~~~~~i~i~~~~---~~-e~---a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IK-DPKNYRIAISHAG---NE-EE---AEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HC-TGCGEEEEEEESS----H-HH---HHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hh-cCCceeEEEEEcC---CH-HH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 345567778888888887432 11 1223333333332 22 33 34455555666555 45545556
Q ss_pred ccccc
Q 010541 231 SFMTS 235 (507)
Q Consensus 231 ~~~TS 235 (507)
+-+++
T Consensus 262 ~~i~~ 266 (280)
T PF02645_consen 262 PVIGA 266 (280)
T ss_dssp HHHHH
T ss_pred cEEEE
Confidence 55543
No 30
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=49.62 E-value=3.3e+02 Score=28.43 Aligned_cols=175 Identities=20% Similarity=0.271 Sum_probs=101.3
Q ss_pred ceeccCCCCCCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCc
Q 010541 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGR 80 (507)
Q Consensus 3 ~aav~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~--G~~v~~v~v~DDva~~~~~~~~~R 80 (507)
+..|.|.-=-.||+..|++||+.++... |+++-.| -|.=||+++|... +-+|.+ | |.+ .=-
T Consensus 118 ~~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~V--i-------pTk--s~~ 180 (313)
T PF13684_consen 118 DVVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVV--I-------PTK--SIP 180 (313)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEE--E-------ecC--CHH
Confidence 3445565545899999999999986554 6666554 4677777777653 223222 2 111 123
Q ss_pred cccchhhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccceecc--ccccCCCCCCCCCCCCeeEEeccccCCCCcccc
Q 010541 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS--VCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVA 158 (507)
Q Consensus 81 RG~aG~v~v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gval~--~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~ 158 (507)
.|++.. ++-+...++++-.+.-+.+..+++|.-+.-. .-.++ .+.+..|.. +||.+.--+...
T Consensus 181 qGlaAl--------~~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd~~~~----~~~i~~gd~---igl~~~~i~~~~ 245 (313)
T PF13684_consen 181 QGLAAL--------LVFDPEADLEENVEAMTEAAARVRTGEITYAVRDTKIN----GGEIKKGDY---IGLVDGKIVVVG 245 (313)
T ss_pred HHHHHH--------HHhCccCChHHHHHHHHHHHhhCeeeeEEEeeecceec----CcccccCCE---EEEeCCEEEEEc
Confidence 344321 1124445888888888888888887766443 22222 222333333 555444433332
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEE
Q 010541 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVE 225 (507)
Q Consensus 159 ~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~-~i~v~ 225 (507)
.+..+.+..+++++++ ++.+++-++=| ..++.-| +..+.++|+++| ++.+.
T Consensus 246 --~~~~~~~~~ll~~l~~---------~~~elvTi~~G-~~~~~~~----a~~l~~~l~~~~p~~eve 297 (313)
T PF13684_consen 246 --KDLEEALKKLLEKLLD---------EDGELVTIYYG-EDVSEEE----AEALAEFLEEKYPDVEVE 297 (313)
T ss_pred --CCHHHHHHHHHHHhhc---------cCCeEEEEEec-CCCCHHH----HHHHHHHHHHHhCCeEEE
Confidence 3477888888888854 35688888877 3444434 444555555655 56665
No 31
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=48.01 E-value=67 Score=32.50 Aligned_cols=95 Identities=23% Similarity=0.151 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHhcc-CCCCeEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhh
Q 010541 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (507)
Q Consensus 12 aSPs~~~i~~ai~~~~-~~~Gvl~iv--~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v~ 88 (507)
+.||+.++.++++... .+.-||+|- ..-+|=.=|+-+|+++.. +++| .|=| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~i---~ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAKV---TVID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCCE---EEEC-----------ChHHHHHHHH
Confidence 3478888888987654 334466553 344454445555554442 2332 2222 2445567788
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccce
Q 010541 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (507)
Q Consensus 89 v~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gv 122 (507)
+..-|..+.++|.+++||.+..++..+++.+.=+
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 8888999999999999999999999999887643
No 32
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=45.72 E-value=39 Score=29.58 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010541 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (507)
Q Consensus 190 v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G 230 (507)
+.+=|...|+.+....--+++++.+.|++.+|+.+.|+|+-
T Consensus 59 a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 59 CFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 44457888999987788899999999999999999999984
No 33
>PRK08815 GTP cyclohydrolase; Provisional
Probab=45.49 E-value=17 Score=38.94 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=28.1
Q ss_pred eeccCCCCCCC---CHHHHHHHHHhcc-CCCCeEEEeeccccc
Q 010541 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTGD 42 (507)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~~~-~~~Gvl~iv~NYtGD 42 (507)
.+..||||-|. .-.|.-+|++.+. .+.|||+.+ |-.|-
T Consensus 224 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegr 265 (375)
T PRK08815 224 SCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGR 265 (375)
T ss_pred cCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCc
Confidence 46789999875 3478888999975 667998866 54543
No 34
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.16 E-value=25 Score=37.62 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=40.2
Q ss_pred eeccCCCCCCC---CHHHHHHHHHhcc-CCCCeEEEeecc-cc---------------------ccccHHHHHHHHHhcC
Q 010541 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSEG 57 (507)
Q Consensus 4 aav~G~vFaSP---s~~~i~~ai~~~~-~~~Gvl~iv~NY-tG---------------------D~lnFg~A~e~a~~~G 57 (507)
.+..||||-|- ...|+..|++.+. .+.|||+...|- .| |-=+||+|+++.+.-|
T Consensus 256 ~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~Lg 335 (367)
T PRK14019 256 PLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDLG 335 (367)
T ss_pred ccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHcC
Confidence 46789999874 3678999999975 556998876543 12 3456788888888887
Q ss_pred Cc
Q 010541 58 YK 59 (507)
Q Consensus 58 ~~ 59 (507)
++
T Consensus 336 v~ 337 (367)
T PRK14019 336 VG 337 (367)
T ss_pred CC
Confidence 64
No 35
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=42.73 E-value=58 Score=32.94 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccc
Q 010541 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (507)
Q Consensus 12 aSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDv 69 (507)
...+++++-++++.-...+.|++.--||+|.+.+..--++.+++.|+ .++-|++
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA 191 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEA 191 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECc
Confidence 46688999888876334455555556999999999888899988875 3455555
No 36
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=41.43 E-value=32 Score=37.28 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=26.2
Q ss_pred eeccCCCCCCCC---HHHHHHHHHhcc-CCCCeEEEee
Q 010541 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (507)
Q Consensus 4 aav~G~vFaSPs---~~~i~~ai~~~~-~~~Gvl~iv~ 37 (507)
.+..||||-|-. ..|+-.|++.+. .+.|||+.+.
T Consensus 257 ~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~ 294 (402)
T PRK09311 257 ECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMR 294 (402)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEe
Confidence 467899998742 478888999976 5669988776
No 37
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=38.34 E-value=43 Score=29.75 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=34.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010541 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (507)
Q Consensus 191 ~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G 230 (507)
.+=|..+|+.+.-.---+...+.+.|++++||...|+|+-
T Consensus 60 ~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~ 99 (113)
T PTZ00450 60 YVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVF 99 (113)
T ss_pred EEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3448999999887677788999999999999999999984
No 38
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=37.97 E-value=65 Score=28.86 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCCcc
Q 010541 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (507)
Q Consensus 164 ~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~Gf 241 (507)
.+-+..+|..|.+ ++...+..+|.|++||-|-....+-......-...|.++ |+++ ..+|+=|++.+++.-
T Consensus 13 ~~k~~~~l~Nl~N----ll~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~--~aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTN----LLEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEF--VACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHH----HhcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEE--EEecchHHHcCCCHH
Confidence 5566677777654 455567889999999999888888777776566777777 8776 478999998887743
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=36.04 E-value=42 Score=33.07 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.2
Q ss_pred eccCCCCC--------CCCHHHHHHHHHhcc-CCCCeEEEeeccc
Q 010541 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (507)
Q Consensus 5 av~G~vFa--------SPs~~~i~~ai~~~~-~~~Gvl~iv~NYt 40 (507)
.++||+|- +|....+.+.++... .+..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 466778888887775 4478999999995
No 40
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.86 E-value=38 Score=36.54 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=27.4
Q ss_pred ceeccCCCCCCC---CHHHHHHHHHhccCCCCeEEEeeccccc
Q 010541 3 TAAICGDVFASP---PVDSILAGIHAVTGPMGCLLIVTNYTGD 42 (507)
Q Consensus 3 ~aav~G~vFaSP---s~~~i~~ai~~~~~~~Gvl~iv~NYtGD 42 (507)
+.+..||||-|- .-.|+-.|++.+....|||+. -|..|-
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvY-Lrqegr 280 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIY-LRQEGR 280 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEE-ECCCCc
Confidence 356789999874 337888999998643399864 455543
No 41
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.42 E-value=58 Score=34.62 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=71.6
Q ss_pred HHHHHh-------HHHHcCCCHHHHHHHHHHHHhhhcccceeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCC
Q 010541 89 VNKIAG-------AAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (507)
Q Consensus 89 v~KiaG-------A~A~~G~~l~ev~~~~~~~~~~~~t~gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~ 161 (507)
|+||.| .+.++|++-+|+.+-. +|++=-...+|++++|||-+=||.-|
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~t---------------g~vvGv~~~sl~v~~GeIfViMGLSG---------- 64 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKKT---------------GLVVGVNDASLDVEEGEIFVIMGLSG---------- 64 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHhh---------------CcEEeeccceeeecCCeEEEEEecCC----------
Confidence 456666 3568899988887532 33332256789999999999999886
Q ss_pred CHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcC--CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccCCC
Q 010541 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMING--LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (507)
Q Consensus 162 ~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNn--lG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSldm~ 239 (507)
|-+...-+++++|.++ ..| + ++|+| .-..+.-||--+-++-....-+.|++-| ..|-|+-.
T Consensus 65 SGKSTLvR~~NrLiep-------t~G-~--ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP-------hrtVl~Nv 127 (386)
T COG4175 65 SGKSTLVRLLNRLIEP-------TRG-E--ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP-------HRTVLENV 127 (386)
T ss_pred CCHHHHHHHHhccCCC-------CCc-e--EEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc-------chhHhhhh
Confidence 3345556677777553 222 2 34443 3334444554444443333333334444 45667777
Q ss_pred cceEEEeecc
Q 010541 240 GFSISIMKAD 249 (507)
Q Consensus 240 GfSiTll~ld 249 (507)
+|.+.+--++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 7777777666
No 42
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=33.56 E-value=81 Score=30.15 Aligned_cols=58 Identities=21% Similarity=0.455 Sum_probs=38.5
Q ss_pred cCCCC-CCCCCeEEEEEcC--------------------CCCCh-----HHHHHHHHHHHHHhhhhhcCCeEEEe-eecc
Q 010541 179 TNYVP-ITRGNRVVLMING--------------------LGATP-----VMELMIAAGKAVPNLQLEHGLAVERV-YTGS 231 (507)
Q Consensus 179 ~~~~~-~~~~~~v~vlvNn--------------------lG~ts-----~~El~~~~~~~~~~L~~~~~i~v~r~-~~G~ 231 (507)
+.|++ .+.||+=++++|| .||+. .-+..-+++.+...|.++ |+.-+++ .+|.
T Consensus 75 Q~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~ 153 (173)
T PF02955_consen 75 QPFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGD 153 (173)
T ss_dssp EE--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETT
T ss_pred EeccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEecccc
Confidence 34665 5678999999997 56654 346667889999999999 9766663 4588
Q ss_pred cccccC
Q 010541 232 FMTSLD 237 (507)
Q Consensus 232 ~~TSld 237 (507)
|+|-.|
T Consensus 154 ~l~EiN 159 (173)
T PF02955_consen 154 KLTEIN 159 (173)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 877554
No 43
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=33.49 E-value=73 Score=30.20 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=53.1
Q ss_pred EEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe
Q 010541 144 ELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA 223 (507)
Q Consensus 144 E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~ 223 (507)
-+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +++-++.++|+++ |.+
T Consensus 30 v~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~Le~~-G~~ 93 (229)
T PF00975_consen 30 VYGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQLEEA-GEE 93 (229)
T ss_dssp EEEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHHHHT-T-S
T ss_pred EEEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHHHHh-hhc
Confidence 3444444433 33456689999999999999763 223389999999997 6778889999999 999
Q ss_pred EEEee-eccccc
Q 010541 224 VERVY-TGSFMT 234 (507)
Q Consensus 224 v~r~~-~G~~~T 234 (507)
|.+++ +....+
T Consensus 94 v~~l~liD~~~p 105 (229)
T PF00975_consen 94 VSRLILIDSPPP 105 (229)
T ss_dssp ESEEEEESCSST
T ss_pred cCceEEecCCCC
Confidence 98765 444444
No 44
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=32.82 E-value=89 Score=32.61 Aligned_cols=85 Identities=28% Similarity=0.404 Sum_probs=59.7
Q ss_pred ceeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCC
Q 010541 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (507)
Q Consensus 121 gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~t 200 (507)
-++|..|+.|+..+ ......+-||-.+-.|+ .++..|+..++++ .|- =+...+|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~--------~~~-kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEK--------NGI-KVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHh--------cCC-ceeeccCCCch
Confidence 45677899887322 45677777776666655 6788889888874 122 26678999999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccC
Q 010541 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (507)
Q Consensus 201 s~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSld 237 (507)
+- +++.|..- .|++.--|.|+-.+++.
T Consensus 73 ~v---------~~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AV---------VRNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HH---------HHHHHHcC-CCCeEeeecchhhhhhc
Confidence 75 34455666 78888889998776654
No 45
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.94 E-value=73 Score=29.14 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhHHHHH
Q 010541 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (507)
Q Consensus 14 Ps~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v~v~Kia 93 (507)
-|+..|.+||...+...++|+.+ ---.-+||-.||.|+.+.+ +.++..+ .| .|- + =|.+ .+
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~-~d---aPl----V-----EGa~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNIL-CD---APL----V-----EGAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhh-cc---cch----h-----hhHH----HH
Confidence 46799999999877777777665 4778899999999999655 5554432 22 221 1 1111 34
Q ss_pred hHHHHcCCCHHHHHHHHHH
Q 010541 94 GAAAAAGLSLADVAAEAKR 112 (507)
Q Consensus 94 GA~A~~G~~l~ev~~~~~~ 112 (507)
-+.++.|.|++||..-+.+
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4566889999888765543
No 46
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=30.96 E-value=47 Score=29.09 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeec
Q 010541 191 VLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (507)
Q Consensus 191 ~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G 230 (507)
.+=|..+|+.+.-+--.++.++.+.|++++||...|+|+=
T Consensus 58 ~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 58 FVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 4448899999887777999999999999999999999973
No 47
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=30.46 E-value=3.4e+02 Score=30.26 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=75.9
Q ss_pred HHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---cchh-------hhH
Q 010541 23 IHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------ILV 89 (507)
Q Consensus 23 i~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva---~~~~~~~~~RRG---~aG~-------v~v 89 (507)
.+.+.++.|-+++.+||-||+|. .+++...-.-|+- -.+.+++|-. ..+..+.+-|.- ++|. -.+
T Consensus 325 ~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~I 402 (483)
T PLN03065 325 AYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASI 402 (483)
T ss_pred HHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHH
Confidence 46678888999999999999997 5888888787854 4466788853 233333332211 2221 233
Q ss_pred HHHHhHHHHcCCC--HHHHHHHHHHHHhhhc-ccceeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCCCHHHH
Q 010541 90 NKIAGAAAAAGLS--LADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVV 166 (507)
Q Consensus 90 ~KiaGA~A~~G~~--l~ev~~~~~~~~~~~~-t~gval~~c~~Pg~~~~~~l~~~e~E~G~GiHgEpG~~~~~~~~a~~l 166 (507)
.=.+..+.-.|.. -+++.+.|+++-+.+. ||.- | .-+- .+|.-+||. ...+....+-.+.
T Consensus 403 lA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~--------G-~~T~-------DLg~~~~G~-~~~~~~~~~T~ef 465 (483)
T PLN03065 403 FAWTRGLEHRAKLDKNEELLDFVHKLESACIETVES--------G-KMTK-------DLAILIHGP-KVSREFYLNTEEF 465 (483)
T ss_pred HHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHc--------C-Cccc-------ccccccCCC-cccCCCCcCHHHH
Confidence 3344455555651 2345555555544432 2211 1 0011 234446772 2234556677788
Q ss_pred HHHHHHHHH
Q 010541 167 VSHVLKQIL 175 (507)
Q Consensus 167 v~~ml~~ll 175 (507)
.+.++++|-
T Consensus 466 ~daV~~~L~ 474 (483)
T PLN03065 466 IDAVAQTLA 474 (483)
T ss_pred HHHHHHHHH
Confidence 888888874
No 48
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=30.11 E-value=87 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=24.5
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEe
Q 010541 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIV 65 (507)
Q Consensus 34 ~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v 65 (507)
+.+-||+| |+..-|.+.+++.|+++..+-.
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEE
Confidence 35789999 9999999999999998877775
No 49
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.15 E-value=4.7e+02 Score=26.87 Aligned_cols=204 Identities=14% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHhccCCC--CeEEEee--ccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCccccchhhhH
Q 010541 14 PPVDSILAGIHAVTGPM--GCLLIVT--NYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (507)
Q Consensus 14 Ps~~~i~~ai~~~~~~~--Gvl~iv~--NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~RRG~aG~v~v 89 (507)
||+..+.++.+...... .||+|-- .-+| .|.. +..|++..-+.++.+++=...+ .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77888888888876543 4665532 2233 3555 4555554444444454432222 233445
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccccee--ccccccCCCCCCCC-CCCCeeEEeccccCCCCc--ccccCCCHH
Q 010541 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQVTSDR-LGPGKMELGLGIHGEPGA--AVADLQPVD 164 (507)
Q Consensus 90 ~KiaGA~A~~G~~l~ev~~~~~~~~~~~~t~gva--l~~c~~Pg~~~~~~-l~~~e~E~G~GiHgEpG~--~~~~~~~a~ 164 (507)
.+=+..++++|.|++|+.+..+++.+++.+.=+. |+++.-=|+-+... +=-+-.-+=.=+|-|.|. --.+..+..
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~lg~lL~ikPIl~~~~G~~~~~~K~R~~k 207 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFLGNLLKIKPILSFEDGELVLLGKVRGQK 207 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHHHhhhcceEEEEEeCCEEEEEeecccHH
Confidence 5556789999999999999999999998775332 34443333211000 000001111113333343 235667778
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeec-ccccccCCCcc
Q 010541 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG-SFMTSLDMAGF 241 (507)
Q Consensus 165 ~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~--v~r~~~G-~~~TSldm~Gf 241 (507)
..++.|++.+.+. ..-..+.+ ++++.+-+. | ......+.|.+. ++. +.-...| ...|-.+-..+
T Consensus 208 ka~~~l~~~~~~~----~~~~~~~~-~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~vi~~H~G~ga~ 274 (282)
T COG1307 208 KAIKKLIELLKKE----VKDGAGYR-VAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGPVIGTHTGPGAL 274 (282)
T ss_pred HHHHHHHHHHHHH----hccCCceE-EEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCCEEEEEECCCeE
Confidence 8888888888764 22122333 444443221 2 334444555555 443 3434444 34445555566
Q ss_pred eEEEe
Q 010541 242 SISIM 246 (507)
Q Consensus 242 SiTll 246 (507)
+|.++
T Consensus 275 ~i~~~ 279 (282)
T COG1307 275 GIGVI 279 (282)
T ss_pred EEEEE
Confidence 66654
No 50
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=27.26 E-value=78 Score=31.00 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=26.7
Q ss_pred eccCCCCCC------C--CHHHHHHHHHhccC-CCCeEEEeecccc
Q 010541 5 AICGDVFAS------P--PVDSILAGIHAVTG-PMGCLLIVTNYTG 41 (507)
Q Consensus 5 av~G~vFaS------P--s~~~i~~ai~~~~~-~~Gvl~iv~NYtG 41 (507)
.++||+|-. | ...++.+.++.+.. +..|.+|.+|+-.
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 478999962 2 23567777777653 5789999999963
No 51
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=26.09 E-value=77 Score=28.18 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHhccCCCCeEEEeecccc
Q 010541 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (507)
Q Consensus 10 vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtG 41 (507)
|...|+.++.++.......+.+.++|+.|||.
T Consensus 81 i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 81 IIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred eEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 55578888888886556777888999999994
No 52
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=25.30 E-value=1.6e+02 Score=30.17 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-ccccchhhhHH
Q 010541 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILVN 90 (507)
Q Consensus 12 aSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~~~~~~~~~-RRG~aG~v~v~ 90 (507)
..|..++|+++++.. +..=++.+.+|++ +. .+....-|++|=.+-...|+.-. ++..| |.-+.|.+=..
T Consensus 206 ~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 206 SLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDPI 275 (330)
T ss_pred hhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcChH
Confidence 356778888888764 3344666777766 11 34444456554222222344432 22344 56788888665
Q ss_pred HHHhHHHHcCCCHHHHHHHHHHHHhhhcc--cceecc-ccccCCCC
Q 010541 91 KIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVALS-VCTLPGQV 133 (507)
Q Consensus 91 KiaGA~A~~G~~l~ev~~~~~~~~~~~~t--~gval~-~c~~Pg~~ 133 (507)
..+ ...+-+||.+-.+++.+.+.. =|.-|+ +|.+|-+.
T Consensus 276 ~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~ 316 (330)
T cd03465 276 DVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDT 316 (330)
T ss_pred Hhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCC
Confidence 221 134669999999999988765 344453 47777543
No 53
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=25.11 E-value=96 Score=27.24 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=24.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEE
Q 010541 192 LMINGLGATPVMELMIAAGKAVPNLQLEHGLAVER 226 (507)
Q Consensus 192 vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r 226 (507)
.||| .|+-|.-+..-+.+.+.+...++|||....
T Consensus 66 fivN-~g~Ata~dv~~Li~~v~~~V~~~~Gi~Le~ 99 (105)
T PF02873_consen 66 FIVN-HGGATAADVLALIEEVRERVKEKFGIELEP 99 (105)
T ss_dssp EEEE--SS--HHHHHHHHHHHHHHHHHHHS--B-B
T ss_pred eEEE-CCCCCHHHHHHHHHHHHHHHHHHHCCeeee
Confidence 4566 578888899999999999999999987654
No 54
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=25.07 E-value=1.4e+02 Score=30.17 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=35.1
Q ss_pred eccCCCCC--CC-CHHHHHHHHHhccCCCCeEEEeecccccc--ccHHHHHHHHHhcCCc
Q 010541 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (507)
Q Consensus 5 av~G~vFa--SP-s~~~i~~ai~~~~~~~Gvl~iv~NYtGD~--lnFg~A~e~a~~~G~~ 59 (507)
.++||++. +| ..+++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899987 33 34566677777776678999999995221 1122234556667764
No 55
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=24.85 E-value=2e+02 Score=33.95 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=49.4
Q ss_pred HHHHHHHHHhHHhhhhccCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 010541 312 EAAAEAVVNLRDRLNEWDSKVGDGDCGSTMYRGATAILEDKKKYYPLNDAAETVNEIGASIRRVMGGTSGILYHIF 387 (507)
Q Consensus 312 ~~~~~~li~~e~~Ln~LD~~vGDGD~G~tm~~ga~ai~~~l~~~~~~~~~~~~l~~i~~a~~~~~GGtSG~Ly~~~ 387 (507)
+++-+.+..++.+|=+||-. .||...=++.-++|..+-. ...+.++..+|.-+...+||-.|.-||++
T Consensus 881 EsIKdQierakaeLLRLDlH--EGD~p~WikqL~~At~DvW------PaaA~~~~~iGnfL~~ta~giFGtafs~L 948 (981)
T PF03408_consen 881 ESIKDQIERAKAELLRLDLH--EGDYPAWIKQLASATKDVW------PAAASFLSGIGNFLSGTAGGIFGTAFSIL 948 (981)
T ss_pred hhHHHHHHHHHHHHheeecc--cCCcHHHHHHHHHHhhhhh------HHHHHHHHHHHHHhhhccccccchHHHHH
Confidence 46678888999999999964 5677777776666543322 24678899999988887777777655554
No 56
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=23.87 E-value=3.4e+02 Score=26.73 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=36.3
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEE
Q 010541 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVE 225 (507)
Q Consensus 151 gEpG~~~~~~~~a~~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~-~~i~v~ 225 (507)
+=||.-..+..+...++..++..|... |=+-+|+||+=|| + .-..+.+.+.|..+ .++.+.
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N---~~~l~~~~~~l~~~~~~~~v~ 133 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--N---IAALEAAARELRQEYPGVKVF 133 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--H---HHHHHHHHHHHHHHGCC-EEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--H---HHHHHHHHHHHHhhCCCcEEE
Confidence 458876666566677777777777543 4466999999999 2 22345555555555 466654
No 57
>PRK07198 hypothetical protein; Validated
Probab=23.73 E-value=1.1e+02 Score=33.20 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.7
Q ss_pred ceeccCCCCCCCCH---HH----HHHHHHhccC-CCCeEEEeecccc
Q 010541 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (507)
Q Consensus 3 ~aav~G~vFaSPs~---~~----i~~ai~~~~~-~~Gvl~iv~NYtG 41 (507)
+.+..||||-|-.- .| |-.|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 45778999999854 44 5567777765 8899988864 54
No 58
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.65 E-value=2.8e+02 Score=27.68 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=33.2
Q ss_pred eccCCCCCCCC--HHH---HHHHHHhcc-CC-CCeEEEeecccc-ccccHHHHHHHHHhcCCcE
Q 010541 5 AICGDVFASPP--VDS---ILAGIHAVT-GP-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (507)
Q Consensus 5 av~G~vFaSPs--~~~---i~~ai~~~~-~~-~Gvl~iv~NYtG-D~lnFg~A~e~a~~~G~~v 60 (507)
.++||+|=... ..+ +...++.+. .. -.|++|.+|+-- +++++ ..+..+..|+.|
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 57899998754 322 234454443 23 689999999963 45554 345566666543
No 59
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=23.59 E-value=74 Score=35.96 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=28.1
Q ss_pred ceeccCCCCCCC---CHHHHHHHHHhcc-CCCCeEEEeecccc
Q 010541 3 TAAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTG 41 (507)
Q Consensus 3 ~aav~G~vFaSP---s~~~i~~ai~~~~-~~~Gvl~iv~NYtG 41 (507)
+.|..||||-|- .-.|.-.|++.+. .+.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 457789999876 3478889999986 556887755 5554
No 60
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=23.13 E-value=1.8e+02 Score=27.69 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=35.7
Q ss_pred eccCCCCCCCCHH--HHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCC
Q 010541 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (507)
Q Consensus 5 av~G~vFaSPs~~--~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~ 58 (507)
.++||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4679999876554 56666777767788999999986444333332445555564
No 61
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=22.90 E-value=57 Score=34.20 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=31.3
Q ss_pred HhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccC
Q 010541 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCAL 71 (507)
Q Consensus 24 ~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~v~v~DDva~ 71 (507)
.++.+..|-++-+|||.|||..==+ ++---+-|+=..+++.-|--.+
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~v-AQg~GSLGlMTSVLv~pdGKT~ 313 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIV-AQGYGSLGLMTSVLVCPDGKTV 313 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHH-HhcccchhhheeEEEcCCCCee
Confidence 3456889999999999999976433 3333455666666665554433
No 62
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=21.93 E-value=88 Score=26.54 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=24.7
Q ss_pred cCCCCCCCCHHHHHHHHHhccCCCCeEEEeecccccc
Q 010541 7 CGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDR 43 (507)
Q Consensus 7 ~G~vFaSPs~~~i~~ai~~~~~~~Gvl~iv~NYtGD~ 43 (507)
+++.| .|++++.+..+=..-...|-|+| ||.+..
T Consensus 51 vnn~f-~p~~d~~~g~LY~~~~~dGfLyi--~Ys~~~ 84 (87)
T cd01612 51 INNSF-APSPDENVGNLYRCFGTNGELIV--SYCKTV 84 (87)
T ss_pred ECCcc-CCCchhHHHHHHHhcCCCCEEEE--EEeCcc
Confidence 46767 58888888888555567888887 787653
No 63
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.67 E-value=3e+02 Score=28.68 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeecccccccC
Q 010541 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (507)
Q Consensus 165 ~lv~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~~~~~L~~~~~i~v~r~~~G~~~TSld 237 (507)
+.+.+.|+.+..+ ++-+.|+|.||.=||+.. .=..+++++. .|.++ + |+.++++.++-|=.
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~-as~~i~~~l~-~l~~~-~--PV~v~v~~~AASGG 143 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVV-ASELIARALK-RLRAK-K--PVVVSVGGYAASGG 143 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchh-HHHHHHHHHH-HHhhc-C--CEEEEECCeecchh
Confidence 3445556666442 345679999999999876 3334455444 45555 5 88888887776643
No 64
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=20.22 E-value=99 Score=32.65 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=31.4
Q ss_pred HHHHHHHHhcccCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHH
Q 010541 168 SHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGK 211 (507)
Q Consensus 168 ~~ml~~ll~~~~~~~~~~~~~~v~vlvNnlG~ts~~El~~~~~~ 211 (507)
..||++||.. +.|.|++|+.|.+|-.+.+|...+...
T Consensus 71 tTLLn~Il~~-------~hgKRIAVIlNEfGes~die~sl~~~~ 107 (391)
T KOG2743|consen 71 TTLLNYILTG-------QHGKRIAVILNEFGESSDIEKSLAVSQ 107 (391)
T ss_pred HHHHHHHHcc-------CCCceEEEEhhhcccchhhhHHHHhcc
Confidence 3578888753 468999999999999999999998877
No 65
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.19 E-value=1.5e+02 Score=28.66 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCC---CCHHHHHHHHHhccCCCCeEEEeeccccccccHHHHHHHHHhcCCcEEE
Q 010541 10 VFAS---PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEI 62 (507)
Q Consensus 10 vFaS---Ps~~~i~~ai~~~~~~~Gvl~iv~NYtGD~lnFg~A~e~a~~~G~~v~~ 62 (507)
||+| .....+++++..=.-..+|.+||.|... .-+.++|++.||++..
T Consensus 5 il~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-----~~~~~~A~~~gip~~~ 55 (190)
T TIGR00639 5 VLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-----AYGLERAAQAGIPTFV 55 (190)
T ss_pred EEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-----chHHHHHHHcCCCEEE
Confidence 4555 4455566666543334689999999863 2457889999999765
Done!