BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010542
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 QYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 164 bits (416), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 234 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 291
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 292 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 351
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 352 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 411
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 412 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 471
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 472 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 531
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 532 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 588
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 589 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 648
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 649 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 700
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 127 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 185
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 186 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 243
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 244 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 303
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 304 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 363
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 364 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 423
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 424 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 483
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 484 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 540
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 541 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 600
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 601 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 113/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 297 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 355
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLESRVLKTVVVSLIQANLCY 138
PLY +G N +L H L+ VL VSL QA
Sbjct: 356 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 413
Query: 139 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 183
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 414 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 473
Query: 184 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 208
I+ F ++ EL L ++L W+
Sbjct: 474 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 533
Query: 209 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 266
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 534 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 593
Query: 267 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 318
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 594 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 653
Query: 319 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQ 374
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 654 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 710
Query: 375 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 432
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 711 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 770
Query: 433 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 771 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 155/536 (28%), Positives = 232/536 (43%), Gaps = 117/536 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 103 -----PLYRTSGD------------------NSVL-----YDHDLESRVLKTVVVSLIQA 134
PLY +G N +L H L+ VL VSL QA
Sbjct: 234 IKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA 293
Query: 135 NLCYALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMS 179
+ + V E + K E + +L + +K++E H + ++
Sbjct: 294 --LEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVK 351
Query: 180 IQRAISIVF---------------------------DRRPELR--------LEGLAHKVL 204
R I+ F ++ EL L ++L
Sbjct: 352 PPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQIL 411
Query: 205 QWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHR 262
W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 412 DWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTA 471
Query: 263 VTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEA 314
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +
Sbjct: 472 VRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTS 531
Query: 315 AIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYM 370
A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ +
Sbjct: 532 AVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLAL 588
Query: 371 PAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTV 428
AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 589 VAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAA 648
Query: 429 GKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 471
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 649 GSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 704
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 210/445 (47%), Gaps = 49/445 (11%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ +
Sbjct: 375 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISM- 432
Query: 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGE-AFESIL 164
H R LIQ +G ++ + K + F ++L
Sbjct: 433 -----------HKFGERC------DLIQ----------EGGRITDPTIDKRMDFHFNALL 465
Query: 165 KETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
+ R++ + D+ + I + F + ++ L +VLQ++L +E ++
Sbjct: 466 DVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNL 525
Query: 220 ETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVT 276
+S +SWD E G H L+ GY +I LA+GLDI+L V I V+VT
Sbjct: 526 HQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVT 585
Query: 277 VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336
G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW
Sbjct: 586 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 645
Query: 337 PN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 389
+ +F G V S + G + F ++ H VL+ + AG+ + + D+
Sbjct: 646 DSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQ 705
Query: 390 FAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLF 446
L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +F
Sbjct: 706 QCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVF 765
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAA 471
FAGEAT+ +P +V GA+ +G+ A
Sbjct: 766 FAGEATNRHFPQTVTGAYLSGVREA 790
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 210/445 (47%), Gaps = 49/445 (11%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ +
Sbjct: 363 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISM- 420
Query: 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGE-AFESIL 164
H R LIQ +G ++ + K + F ++L
Sbjct: 421 -----------HKFGERC------DLIQ----------EGGRITDPTIDKRMDFHFNALL 453
Query: 165 KETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
+ R++ + D+ + I + F + ++ L +VLQ++L +E ++
Sbjct: 454 DVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNL 513
Query: 220 ETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVT 276
+S +SWD E G H L+ GY +I LA+GLDI+L V I V+VT
Sbjct: 514 HQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVT 573
Query: 277 VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336
G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW
Sbjct: 574 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 633
Query: 337 PN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 389
+ +F G V S + G + F ++ H VL+ + AG+ + + D+
Sbjct: 634 DSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQ 693
Query: 390 FAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLF 446
L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +F
Sbjct: 694 QCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVF 753
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAA 471
FAGEAT+ +P +V GA+ +G+ A
Sbjct: 754 FAGEATNRHFPQTVTGAYLSGVREA 778
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 210/445 (47%), Gaps = 49/445 (11%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ +
Sbjct: 355 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISM- 412
Query: 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK-VGEAFESIL 164
H R LIQ +G ++ + K + F ++L
Sbjct: 413 -----------HKFGERC------DLIQ----------EGGRITDPTIDKRMDFHFNALL 445
Query: 165 KETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADA 219
+ R++ + D+ + I + F + ++ L +VLQ++L +E ++
Sbjct: 446 DVVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNL 505
Query: 220 ETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVT 276
+S +SWD E G H L+ GY +I LA+GLDI+L V I V+VT
Sbjct: 506 HQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVT 565
Query: 277 VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336
G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW
Sbjct: 566 TTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 625
Query: 337 PN----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAAN 389
+ +F G V S + G + F ++ H VL+ + AG+ + + D+
Sbjct: 626 DSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQ 685
Query: 390 FAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLF 446
L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +F
Sbjct: 686 QCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVF 745
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAA 471
FAGEAT+ +P +V GA+ +G+ A
Sbjct: 746 FAGEATNRHFPQTVTGAYLSGVREA 770
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 209/472 (44%), Gaps = 80/472 (16%)
Query: 54 VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
+++LE+ D +GGR+H G V+LGA+W+ GV + NP+ P++ S L L +R+ D
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL---VTKVGEAFESILKET 167
L V K ++D D Q EL V ++GE + L +
Sbjct: 91 Y-------LAQNVYKE----------DGGVYDEDYVQKRIELADSVEEMGEKLSATLHAS 133
Query: 168 DKVREEHDEDMSIQRAISIVFDRRPELRLEGLA---HKVLQWYLCRMEGWFAADAETISL 224
+ +DMSI + R E + G A V+ +Y E FA SL
Sbjct: 134 GR------DDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSL 180
Query: 225 KSWDKEELLP-------GGHGLMV---RGYLPVINTLA-----------KGLDIRLGHRV 263
++ +P G V RGY V+ LA K +D RL ++
Sbjct: 181 QN-----TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRL--QL 233
Query: 264 TKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
K+ R GV V E + AD V+V+ LGVL++ I+F+P+LP WK AI
Sbjct: 234 NKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 293
Query: 320 GVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 375
+ + KI + F + FWP + FL S Y + + VL+ +
Sbjct: 294 DMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 376 ARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD 433
+R IE+ SDE L+K+ P D LV W +D G++S VG +
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY 413
Query: 434 LYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 482
Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE +C + + +Y
Sbjct: 414 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 465
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/472 (28%), Positives = 208/472 (44%), Gaps = 80/472 (16%)
Query: 54 VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
+++LE+ D +GGR+H G V+LGA+W+ GV + NP+ P++ S L L +R+ D
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL---VTKVGEAFESILKET 167
L V K ++D D Q EL V ++GE + L +
Sbjct: 91 Y-------LAQNVYKE----------DGGVYDEDYVQKRIELADSVEEMGEKLSATLHAS 133
Query: 168 DKVREEHDEDMSIQRAISIVFDRRPELRLEGLA---HKVLQWYLCRMEGWFAADAETISL 224
+ +DMSI + R E + G A V+ +Y E FA SL
Sbjct: 134 GR------DDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSL 180
Query: 225 KSWDKEELLP-------GGHGLMV---RGYLPVINTLA-----------KGLDIRLGHRV 263
++ +P G V RGY V+ LA K +D RL ++
Sbjct: 181 QN-----TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRL--QL 233
Query: 264 TKITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
K+ R GV V E + AD V+V+ LGVL++ I+F+P+LP WK AI
Sbjct: 234 NKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQF 293
Query: 320 GVGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL 375
+ + I + F + FWP + FL S Y + + VL+ +
Sbjct: 294 DMAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEE 353
Query: 376 ARDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHD 433
+R IE+ SDE L+K+ P D LV W +D G++S VG +
Sbjct: 354 SRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRY 413
Query: 434 LYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 482
Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE +C + + +Y
Sbjct: 414 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 465
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT D
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
++ +Y + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT D
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
++ +Y + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT D
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
++ +Y + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 191/502 (38%), Gaps = 122/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---GD 110
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT D
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASW-HQDTLTNPLFLEEAQLSLNDGRTRFVFDD 94
Query: 111 NSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 170
++ +Y + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 171 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 407
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 408 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 449
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 188/502 (37%), Gaps = 120/502 (23%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS---G 109
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFD 93
Query: 110 DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK 169
D++ +Y + RV D D +EL+ ++ + S E +
Sbjct: 94 DDNFIYIDEERGRV------------------DHD-----KELLLEIVDNEXSKFAELEF 130
Query: 170 VREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 228
+ D S + + +R + + Q LCR +E W D + +S K
Sbjct: 131 HQHLGVSDCSFFQLVXKYLLQRRQFLTNDQIRYLPQ--LCRYLELWHGLDWKLLSAKD-- 186
Query: 229 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 284
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 285 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 335
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 336 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 360
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKI------------------LP 400
+TG + L IE + ++ F+F Q L KI +
Sbjct: 366 STGVASFXXLXQAPLTNHIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIA 425
Query: 401 DASSPI--QYLVSHWGTDANSLGSYSY---------DTVGKSHDLYERLRIPVDNLFFAG 449
+A+ P+ +VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDXVVAXSNGQDSRIR-------FAG 478
Query: 450 EATSMSYPGSVHGAFSTGLMAA 471
E T G +GA+ +G A
Sbjct: 479 EHTIXDGAGCAYGAWESGRREA 500
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 187/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
IS + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGHMEGAVEAGERAARE 449
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/447 (23%), Positives = 187/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
IS + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 22 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 80 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 138
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 139 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 193
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
IS + +E GG G + + ++ G ++L V I + V
Sbjct: 194 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 245
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 246 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 301
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 302 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 361
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 362 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 421
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 422 FAGTETATHWSGYMEGAVEAGERAARE 448
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
IS + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGFMEGAVEAGERAARE 449
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
IS + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGWMEGAVEAGERAARE 449
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 105/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
IS + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGLMEGAVEAGERAARE 449
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 106/447 (23%), Positives = 186/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
S + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIFSTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/447 (23%), Positives = 185/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 81 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 139
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 140 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 194
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
S + +E GG G + + ++ G ++L V I + V
Sbjct: 195 ---TTRIASTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 246
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 247 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 302
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ +Y L+ K G + ++ AR + +++ E
Sbjct: 303 EPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 362
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 363 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 422
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 423 FAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 184/447 (41%), Gaps = 40/447 (8%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 22 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLESRVLK-------TVVVSLIQANLCYALFDMDGNQVPQELVTKVGE 158
+ + +++ +S + + L N + DM G ++P + K
Sbjct: 80 KVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIPSDAPWKAPL 138
Query: 159 AFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRMEGW 214
A E ++ ++ S ++ ++ + L + H+V WY+ + G
Sbjct: 139 AEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLWYVKQCGG- 193
Query: 215 FAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVK 274
S + +E GG G + + ++ G ++L V I + V
Sbjct: 194 ---TTRIASTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYIDQTRENVL 245
Query: 275 VTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332
V + + A V+ A+P LG+ I F P LP + I + +G K I+++
Sbjct: 246 VETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVYYK 301
Query: 333 KVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEKMSDEAAAN 389
+ FW ++ G ++ + L+ K G + ++ AR + +++ E
Sbjct: 302 EPFWRKKDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLK 361
Query: 390 FAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDNLF 446
K+L +A P+ Y +W + S G Y+ Y G LR PVD ++
Sbjct: 362 KLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVDRIY 421
Query: 447 FAGEATSMSYPGSVHGAFSTGLMAAED 473
FAG T+ + G + GA G AA +
Sbjct: 422 FAGTETATHWSGYMEGAVEAGERAARE 448
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/450 (21%), Positives = 182/450 (40%), Gaps = 46/450 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 21 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 154
G+ Y+ + ++ ++ + ++ + N + D G ++P +
Sbjct: 74 GIETYKVNVSERLVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 210
+ A + K T K + R + +F + + H+V WY+ +
Sbjct: 134 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 189
Query: 211 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
G S+ + +E GG G + + ++ G ++L H VT + +
Sbjct: 190 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 240
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
+ + + + V+ A+P L A+ I F P LP + I L +G K +M+
Sbjct: 241 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 298
Query: 331 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 386
+ + FW ++ G ++ D S L+ K G ++ ++ A + R + K+ E
Sbjct: 299 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 357
Query: 387 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 443
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 358 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 417
Query: 444 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
+FFAG T+ + G + GA G AA +
Sbjct: 418 RIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 183/450 (40%), Gaps = 46/450 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ G Q N + + L
Sbjct: 32 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYV-GPTQ-NRILRLSKEL 84
Query: 101 GLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 154
G+ Y+ + ++ ++ + ++ + N + D G ++P +
Sbjct: 85 GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 144
Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 210
+ A + K T K + R + +F + + H+V WY+ +
Sbjct: 145 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 200
Query: 211 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
G S+ + +E GG G + + ++ G ++L H VT + +
Sbjct: 201 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 251
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
+ + + + V+ A+P L A+ I F P LP + I L +G K +M+
Sbjct: 252 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 309
Query: 331 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 386
+ + FW ++ G ++ D S L+ K G ++ ++ A + R + K+ E
Sbjct: 310 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 368
Query: 387 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 443
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 369 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 428
Query: 444 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
+FFAG T+ + G + GA G AA +
Sbjct: 429 RIFFAGTETATKWSGYMEGAVEAGERAARE 458
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 98/450 (21%), Positives = 182/450 (40%), Gaps = 46/450 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 21 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 154
G+ Y+ + ++ ++ + ++ + N + D G ++P +
Sbjct: 74 GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 155 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 210
+ A + K T K + R + +F + + H+V WY+ +
Sbjct: 134 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 189
Query: 211 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
G S+ + +E GG G + + ++ G ++L H VT + +
Sbjct: 190 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 240
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
+ + + + V+ A+P L A+ I F P LP + I L +G K +M+
Sbjct: 241 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 298
Query: 331 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 386
+ + FW ++ G ++ D S L+ K G ++ ++ A + R + K+ E
Sbjct: 299 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 357
Query: 387 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 443
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 358 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 417
Query: 444 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
+FFAG T+ + G + GA G AA +
Sbjct: 418 RIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/449 (21%), Positives = 187/449 (41%), Gaps = 44/449 (9%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
L + V++LE+RDRVGGR +T + VD+G +++ +N + + LG+ Y
Sbjct: 40 LSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPT--QNRILRLSKELGIETY 97
Query: 106 RTSGDNSVLYDHDLESRVLKTVV------VSLIQANLCYALFDMDGNQVPQELVTKVGEA 159
+ + + ++ ++ + ++ + N + D G ++P + + A
Sbjct: 98 KVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHA 157
Query: 160 FESILKETDKVREEHDED----MSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRM 211
+E DK+ + D R + +F + + H+V WY+ +
Sbjct: 158 -----QEWDKMTMKDLIDKICWTKTAREFAYLF---VNINVTSEPHEVSALWFLWYVRQC 209
Query: 212 EGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYI 271
G A S+ + +E GG G + + ++ G ++L VT I +
Sbjct: 210 GG----TARIFSVTNGGQERKFVGGSGQVSEQIMGLL-----GDKVKLSSPVTYIDQTDD 260
Query: 272 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 331
+ V + + V+ A+P +L A+ I F+P LP + I L +G K ++++
Sbjct: 261 NIIVETLNHEHYECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYY 318
Query: 332 DKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEAA 387
+ FW ++ G ++ D + L+ K G ++ ++ A + R + K+ +
Sbjct: 319 KEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADR-LAKLHKDIR 377
Query: 388 ANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDN 444
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 378 KRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR 437
Query: 445 LFFAGEATSMSYPGSVHGAFSTGLMAAED 473
++FAG T+ + G + GA G AA +
Sbjct: 438 IYFAGTETATQWSGYMEGAVEAGERAARE 466
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 107/454 (23%), Positives = 183/454 (40%), Gaps = 53/454 (11%)
Query: 47 LHDASFKVVLLESRDRVGGRV--HTDYSFGFPVDLGASWL---HGVCQENPLAPVISRLG 101
L A KV +LE+ +R GGRV H + G+ +LG + H + +E I + G
Sbjct: 52 LAGAGHKVTVLEASERAGGRVRTHRNSKEGWYANLGPMRIPEKHRIVRE-----YIRKFG 106
Query: 102 LPL--YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEA 159
L L + DN+ + ++ RV + V+ L Y + P E G+
Sbjct: 107 LNLNEFSQENDNAWYFIKNIRKRVGE---VNKDPGLLKYPV-------KPSEEGKSAGQL 156
Query: 160 FESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL----AHKVLQWYLCRMEGWF 215
+E L V++ + S + + L EG A ++ L G++
Sbjct: 157 YEESLGSA--VKDLKRTNCSYILNKYDTYSTKEYLIKEGNLSPGAVDMIGDLLNEDSGYY 214
Query: 216 AADAETIS---LKSWDK--EELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 270
+ E++ + +++K +E++ G L Y + ++ RV KI ++
Sbjct: 215 VSFIESLKHDDIFAYEKRFDEIVGGMDQLPTSMYRAIEEK------VKFNARVIKIQQNA 268
Query: 271 IGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK 326
V VT + + + AD V+V AR I+FEP LP K+ A+ + K
Sbjct: 269 NQVTVTYQTPEKDTSSNTADYVIVCTT--SRAARRIQFEPPLPPKKQHALRSVHYRSGTK 326
Query: 327 IIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSD 384
I + FW + G S T Y+ N + +TG V++ G A + +
Sbjct: 327 IFLTCSSKFWEDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAYGIGDDANFFQALKF 386
Query: 385 EAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSYDTVGKSHDLYERLR 439
+ A+ F L I IQ ++ W D ++G+ + T + E L
Sbjct: 387 KDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITTFTPYQFQRFSEALT 446
Query: 440 IPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
P +FFAGE T+ ++ G + +GL AA D
Sbjct: 447 APQGRIFFAGEYTAEAH-GWIDSTIKSGLTAARD 479
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 102/435 (23%), Positives = 171/435 (39%), Gaps = 48/435 (11%)
Query: 47 LHDASFKVVLLESRDRVGGRVHT--DYSFGFPVDLGASWL---HGVCQENPLAPVISRLG 101
L +A +V +LE+ +R GG+V T + G+ +LG L H + +E I + G
Sbjct: 65 LANAGHQVTVLEASERAGGQVKTYRNEKEGWYANLGPMRLPEKHRIVRE-----YIRKFG 119
Query: 102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFE 161
L L S +N + +K + + + N + D P E+ G+ +E
Sbjct: 120 LQLNEFSQENENAW------YFIKNIRKRVGEVNKDPGVLDYPVK--PSEVGKSAGQLYE 171
Query: 162 SILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL----AHKVLQWYLCRMEGWFAA 217
L++ V E + S + + L EG A ++ L G++ +
Sbjct: 172 ESLQKA--VEELRRTNCSYMLNKYDTYSTKEYLLKEGNLSPGAVDMIGDLLNEDSGYYVS 229
Query: 218 DAETIS---LKSWDK--EELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG 272
E++ + +++K +E++ G L Y + + L RV KI +
Sbjct: 230 FIESLKHDDIFAYEKRFDEIVGGMDKLPTSMYQAIQEK------VHLNARVIKIQQDVKE 283
Query: 273 VKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 328
V VT + + + AD V+V AR IKFEP LP K A+ + KI
Sbjct: 284 VTVTYQTSEKETLSVTADYVIVCTT--SRAARRIKFEPPLPPKKAHALRSVHYRSGTKIF 341
Query: 329 MHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEA 386
+ K FW + G S T Y+ N + G V++ G A E + E
Sbjct: 342 LTCTKKFWEDDGIHGGKSTTDLPSRFIYYPNHNFPNGVGVIIAYGIGDDANYFEALDFED 401
Query: 387 AANFAFTQLKKILPDASSPIQ-----YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP 441
+ L I IQ ++ W D ++G + T + E L P
Sbjct: 402 CGDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFSEALTAP 461
Query: 442 VDNLFFAGEATSMSY 456
VD ++FAGE T+ ++
Sbjct: 462 VDRIYFAGEYTAQAH 476
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 99/463 (21%), Positives = 175/463 (37%), Gaps = 86/463 (18%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
A FK +LLE+RDR+GGR + G+P ++G +W+H V +E N L+P +
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99 -RLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 151
G+ + RT+ S H+ E +L++ + + F D VP+
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 152 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 208
K E S + D++R+E +E S++ I + E G + L W+
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 209 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
C M F + + W++ G G + GY+
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 319 LGVG--------IENKIIMHFDKVFWPNVEFLGVVSD--TSYGCSYFLNLHKATGHCVLV 368
V ++NK + + + +P + + D T G ++ + + H
Sbjct: 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHI--- 389
Query: 369 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 428
P + ++ + A F +L + +W D + G++ +
Sbjct: 390 -QPDEDVRETLKAVGQLAPGTFGVKRL-------------VFHNWVKDEFAKGAWFFSRP 435
Query: 429 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
G + + LR + FA ++ + + GA G AA
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 68/454 (14%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
A FK +LLE+RDR+GGR + G+P ++G +W+H V +E N L+P +
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99 -RLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 151
G+ + RT+ S H+ E +L++ + + F D VP+
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 152 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 208
K E S + D++R+E +E S++ I + E G + L W+
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 209 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
C M F + + W++ G G + GY+
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 319 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 378
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 379 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 437
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 438 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 68/454 (14%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
A FK +LLE+RDR+GGR + G+P ++G +W+H V +E N L+P +
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99 -RLGLPLY--RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 151
G+ + RT+ S H+ E +L++ + + F D VP+
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 152 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 208
K E S + D++R+E +E S++ I + E G + L W+
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 209 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 258
C M F + + W++ G G + GY+
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 259 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 318
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 319 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 378
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 379 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 437
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 438 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 471
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 104/466 (22%), Positives = 172/466 (36%), Gaps = 74/466 (15%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE 166
+ +Y R T G+ P TK KE
Sbjct: 82 RYREGESVYISSAGERTRYT------------------GDSFPTNETTK---------KE 114
Query: 167 TDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLK- 225
D++ +E D D++ Q + L+ ++ K QW + + + A D + +
Sbjct: 115 MDRLIDEMD-DLAAQIGAEEPWAHPLARDLDTVSFK--QWLINQSDDAEARDNIGLFIAG 171
Query: 226 ----------SWDKEELLPGGHG--------------LMVRGYLPVINTLAKGL--DIRL 259
S + L+ G ++ G V +A+ L D+ L
Sbjct: 172 GMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFL 231
Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
V + + G V +G A V++AVP + I ++P LP +
Sbjct: 232 NAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQ 289
Query: 320 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQ 374
+G+ K+ ++ FW G T +G S + ++ T H LV + +
Sbjct: 290 SLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDE 345
Query: 375 LARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKS 431
A + ++S E L + L P A P+ Y S WG++ + G Y S+D +G
Sbjct: 346 KADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYTASFD-LGGL 404
Query: 432 HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
H R PV + F+ + G V GA G A D R
Sbjct: 405 HRYGADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 183/437 (41%), Gaps = 59/437 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
L +A KV+LLE +R+GGR ++ S P V++G ++LH + +P LA + R G+
Sbjct: 20 LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 162
P S S R+ T V + + + + V T + +A
Sbjct: 78 PTAAASEFTS------FRHRLGPTAV------DQAFPIPGSEAVAVEAATYTLLRDAHRI 125
Query: 163 ILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETI 222
L++ + ++ D D+ + + +L L ++ + L + M G A A +
Sbjct: 126 DLEKGLENQDLEDLDIPLNEYVD-------KLDLPPVSRQFLLAWAWNMLGQPADQASAL 178
Query: 223 SLKSWDKEELLPGGH----GLMV-------RGYLPVINTLAKGL-DIRLGHRVTKITRHY 270
+ +L+ H G+++ G +++ +++ + +IRL VT I +
Sbjct: 179 WML-----QLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSG 233
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
V VTV+ G F A +V+VA P+ R I F P LP+ + + I++ G KI++H
Sbjct: 234 DVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSVIEEGHGGQGLKILIH 291
Query: 331 FDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL-ARDIEKMSDEAAAN 389
+ +E +G D + Y + ++ + +G DI + D A
Sbjct: 292 V-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKD--AVL 345
Query: 390 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAG 449
+ +++ + D W D G + VG+ +++ L P + F G
Sbjct: 346 YYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVG 397
Query: 450 EATSMSYPGSVHGAFST 466
S+ +PG + GA T
Sbjct: 398 SDVSLEFPGYIEGALET 414
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 183/437 (41%), Gaps = 59/437 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
L +A KV+LLE +R+GGR ++ S P V++G ++LH + +P LA + R G+
Sbjct: 20 LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 162
P S S R+ T V + + + + V T + +A
Sbjct: 78 PTAAASEFTS------FRHRLGPTAV------DQAFPIPGSEAVAVEAATYTLLRDAHRI 125
Query: 163 ILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETI 222
L++ + ++ D D+ + + +L L ++ + L + M G A A +
Sbjct: 126 DLEKGLENQDLEDLDIPLNEYVD-------KLDLPPVSRQFLLAWAWNMLGQPADQASAL 178
Query: 223 SLKSWDKEELLPGGH----GLMV-------RGYLPVINTLAKGL-DIRLGHRVTKITRHY 270
+ +L+ H G+++ G +++ +++ + +IRL VT I +
Sbjct: 179 WML-----QLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSG 233
Query: 271 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 330
V VTV+ G F A +V+VA P+ R I F P LP+ + + I++ G KI++H
Sbjct: 234 DVVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSVIEEGHGGQGLKILIH 291
Query: 331 FDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL-ARDIEKMSDEAAAN 389
+ +E +G D + Y + ++ + +G DI + D A
Sbjct: 292 V-RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKD--AVL 345
Query: 390 FAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAG 449
+ +++ + D W D G + VG+ +++ L P + F G
Sbjct: 346 YYLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVG 397
Query: 450 EATSMSYPGSVHGAFST 466
S+ +PG + GA T
Sbjct: 398 SDVSLEFPGYIEGALET 414
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 94/240 (39%), Gaps = 14/240 (5%)
Query: 245 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 300
LP A + L +V KI ++ V V + + AD V+V R
Sbjct: 243 LPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRA--TR 300
Query: 301 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 358
IKFEP LP K A+ + KI + K FW + G S T Y+ N
Sbjct: 301 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYPNH 360
Query: 359 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHW 413
+ +G V++ G A + + + A+ L I IQ ++ W
Sbjct: 361 NFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKW 420
Query: 414 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 473
D ++G + T + E L VD ++FAGE T+ ++ G + +GL AA D
Sbjct: 421 SLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 103/466 (22%), Positives = 171/466 (36%), Gaps = 74/466 (15%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE 166
+ +Y R T G+ P TK KE
Sbjct: 82 RYREGESVYISSAGERTRYT------------------GDSFPTNETTK---------KE 114
Query: 167 TDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLK- 225
D++ +E D D++ Q + L+ ++ K QW + + + A D + +
Sbjct: 115 MDRLIDEMD-DLAAQIGAEEPWAHPLARDLDTVSFK--QWLINQSDDAEARDNIGLFIAG 171
Query: 226 ----------SWDKEELLPGGHG--------------LMVRGYLPVINTLAKGL--DIRL 259
S + L+ G ++ G V +A+ L D+ L
Sbjct: 172 GMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFL 231
Query: 260 GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319
V + + G V +G A V++AVP + I ++P LP +
Sbjct: 232 NAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRRQHQMHQHQ 289
Query: 320 GVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CVLVYMPAGQ 374
+G+ K+ ++ FW G T +G S + ++ T H LV + +
Sbjct: 290 SLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGTLVAFVSDE 345
Query: 375 LARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY--SYDTVGKS 431
A + ++S E L + L P A P+ Y S WG++ + G Y S+D +G
Sbjct: 346 KADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAASFD-LGGL 404
Query: 432 HDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
H R PV + F+ + V GA G A D R
Sbjct: 405 HRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 312 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 366
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 367 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 423
LV + + A + ++S E L + L P A P+ Y S WG++ + G+Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAA 397
Query: 424 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLY 115
+ +Y
Sbjct: 82 RYREGESVY 90
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)
Query: 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 312 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 366
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 367 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 423
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 424 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLY 115
+ +Y
Sbjct: 82 RYREGESVY 90
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V +LE+RDRVGGR TD G +++G W+ + L ++ LGL +Y
Sbjct: 26 LKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS--PDQTVLMELLDELGLKMYS 83
Query: 107 TSGDNSVLY 115
D +Y
Sbjct: 84 RYRDGESVY 92
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)
Query: 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 313
G D+ L V I GV V E T A V++AVP + + F+P LP +
Sbjct: 228 GDDVVLNSPVRTIKWDENGVSVVSERA-TVNARFVIMAVPPNLYS--RVSFDPPLPRRQH 284
Query: 314 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGV-VSDTSYGCSYFLNLHKATGHCVLVYMPA 372
+G+ K+ +D FW G S + + N + LV +
Sbjct: 285 QMHQHQSLGLVIKVHAVYDTPFWREEGLSGTGFSAGALVQEVYDNTNHGDSRGTLVGFVS 344
Query: 373 GQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSY--SYDTVG 429
+ A + ++S E + L D A +P Y S WG++ + G+Y SYD G
Sbjct: 345 DEKADAVFELSAEDRKKAILESIAGFLGDKALTPEVYYESDWGSEEWTRGAYASSYDLGG 404
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 14/231 (6%)
Query: 257 IRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 312
+ +V KI ++ V V E + AD V+V + R IKF P L K
Sbjct: 255 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPLLPKK 312
Query: 313 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 370
A+ + KI + FW + G S T Y+ N + G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAY 372
Query: 371 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 425
G A + + + A+ F L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT 432
Query: 426 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 476
T + + L ++FAGE T+ ++ G + +GL AA D +
Sbjct: 433 FTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL 482
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 214 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 273
W AE I L+ D+ +LP + R V +GL IR G RVT + G
Sbjct: 186 WHRLGAEVIVLEYMDR--ILPTMDLEVSRAAERVFKK--QGLTIRTGVRVTAVVPEAKGA 241
Query: 274 KVTVEGGKTFVADAVVVAV 292
+V +EGG+ AD V+VAV
Sbjct: 242 RVELEGGEVLEADRVLVAV 260
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRVGGRVHTDYSFGFPVDLG----ASWLHGVCQENPLAPVI 97
KVV LE RDRV G +H G V +G +WL G + N + +I
Sbjct: 212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEII 260
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRVGGRVHTDYSFGFPVDLG----ASWLHGVCQENPLAPVI 97
KVV LE RDRV G +H+ G V +G WL G + N + +I
Sbjct: 423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEII 471
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 253 KGLDIRLGHRVTKITRHYIGVKVT---VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 309
+G+D +LG +VT + G KVT V+GG+ DA VV + G R P
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG-----------RKP 300
Query: 310 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVY 369
+ GV ++++ + D+ F ++ + + D G HKA V V
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPXL---AHKAEDEGVAVA 357
Query: 370 -MPAGQ 374
+ AGQ
Sbjct: 358 EIIAGQ 363
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 249 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAVPLGVLK--AR 300
N + +G DIRL RV +I G VK G ADAVV+A G K R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG-GFAKNNER 322
Query: 301 TIKFEPRLPDWK 312
K++P+L +K
Sbjct: 323 VSKYDPKLKGFK 334
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 249 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAVPLGVLK--AR 300
N + +G DIRL RV +I G VK G ADAVV+A G K R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG-GFAKNNER 322
Query: 301 TIKFEPRLPDWK 312
K++P+L +K
Sbjct: 323 VSKYDPKLKGFK 334
>pdb|4FAI|A Chain A, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
pdb|4FAI|B Chain B, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
Length = 330
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 330 HFDKVFWPNVEFLGVVSDTSYGCSYFLNL 358
H+D + P VEFLG +D++ C+ LNL
Sbjct: 113 HYDSKYMPGVEFLG-ATDSAVPCAMLLNL 140
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGAS 82
L A V+LLE RD+ GGR + GF D G +
Sbjct: 20 LQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPT 55
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 381 KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 440
K+ A+ N + AS+ Q L+S WG +S SY D+ + L+
Sbjct: 89 KLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYP--------DVLKCLKA 140
Query: 441 PVDNLFFAGEATSMSYPGSV-HGAFSTGLMAAEDCR 475
P+ + + +YPG + F GL + C+
Sbjct: 141 PI----LSDSSCKSAYPGQITSNMFCAGLEGGDSCQ 172
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 148 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP 192
+ LV EA I K T K H+ D+S +RA++ +FD P
Sbjct: 34 IADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP 78
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|B Chain B, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|H Chain H, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|K Chain K, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 441
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 85 HGVCQENPLAPVISRLGLPLYRTSGDNSVLYDHDLESRVLKTVVVS 130
H + + P I G ++T S L+D L+SR++KTV VS
Sbjct: 217 HFITDDKPNVAGIVLAGSADFKTELGQSDLFDQRLQSRIIKTVDVS 262
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 214 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVT--KITRHYI 271
W AE L++ DK LP + + L V+ +GL+IRLG RVT ++ + +
Sbjct: 199 WARLGAEVTVLEALDK--FLPAADEQIAKEALKVLTK--QGLNIRLGARVTASEVKKKQV 254
Query: 272 GVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 328
V T G +TF D ++VAV R P + D GV ++ +
Sbjct: 255 TVTFTDANGEQKETF--DKLIVAV-------------GRRPVTTDLLAADSGVTLDERGF 299
Query: 329 MHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLV 368
++ D +V + + D G + HKA+ V+V
Sbjct: 300 IYVDDHCKTSVPGVFAIGDVVRGA---MLAHKASEEGVMV 336
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 246 PVI----NTLAKGLDIRLGHRVTKITRHYI 271
PVI N L KG+D+ GHRVT + Y+
Sbjct: 5 PVIGITGNRLVKGVDVFYGHRVTYTQQRYV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,699,681
Number of Sequences: 62578
Number of extensions: 613281
Number of successful extensions: 1607
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 120
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)