Query 010542
Match_columns 507
No_of_seqs 185 out of 2249
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 01:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02268 probable polyamine ox 100.0 3E-57 6.5E-62 457.1 46.7 434 29-478 1-434 (435)
2 PLN03000 amine oxidase 100.0 2.7E-47 5.8E-52 392.9 43.8 428 26-483 182-628 (881)
3 PLN02529 lysine-specific histo 100.0 4E-47 8.6E-52 391.3 44.1 426 26-481 158-601 (738)
4 PLN02328 lysine-specific histo 100.0 3.3E-46 7.1E-51 385.8 43.4 429 26-484 236-685 (808)
5 PLN02676 polyamine oxidase 100.0 3.9E-45 8.4E-50 368.6 44.0 423 25-480 23-475 (487)
6 PLN02976 amine oxidase 100.0 5E-45 1.1E-49 384.2 45.5 428 27-480 692-1188(1713)
7 KOG0029 Amine oxidase [Seconda 100.0 8.9E-46 1.9E-50 368.0 35.8 432 25-480 12-461 (501)
8 PLN02568 polyamine oxidase 100.0 2.5E-44 5.5E-49 364.7 45.5 433 25-477 2-534 (539)
9 KOG0685 Flavin-containing amin 100.0 2.1E-41 4.5E-46 318.4 34.7 426 27-480 20-493 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 4.8E-42 1E-46 323.6 29.3 416 26-478 5-447 (450)
11 TIGR00562 proto_IX_ox protopor 100.0 2.4E-39 5.2E-44 329.9 32.6 405 28-478 2-460 (462)
12 PRK12416 protoporphyrinogen ox 100.0 1E-38 2.2E-43 324.6 34.0 405 28-478 1-461 (463)
13 PRK11883 protoporphyrinogen ox 100.0 9.2E-38 2E-42 317.8 31.7 402 29-476 1-450 (451)
14 PLN02576 protoporphyrinogen ox 100.0 2.1E-37 4.5E-42 318.0 30.5 407 27-479 11-488 (496)
15 COG1232 HemY Protoporphyrinoge 100.0 4.1E-37 8.9E-42 298.4 29.5 398 29-475 1-443 (444)
16 PRK07233 hypothetical protein; 100.0 1.6E-36 3.4E-41 307.4 29.6 405 30-479 1-432 (434)
17 TIGR02731 phytoene_desat phyto 100.0 1.2E-35 2.7E-40 301.2 34.4 418 30-475 1-453 (453)
18 PF01593 Amino_oxidase: Flavin 100.0 1.3E-36 2.8E-41 309.0 26.7 234 240-475 207-450 (450)
19 PLN02612 phytoene desaturase 100.0 1.4E-35 2.9E-40 304.9 32.9 427 26-478 91-548 (567)
20 PRK07208 hypothetical protein; 100.0 1.2E-34 2.6E-39 296.2 33.3 401 26-477 2-460 (479)
21 PLN02487 zeta-carotene desatur 100.0 1.1E-33 2.4E-38 286.8 28.2 433 27-486 74-561 (569)
22 TIGR03467 HpnE squalene-associ 100.0 3.3E-33 7.2E-38 281.8 31.2 397 42-475 1-418 (419)
23 TIGR02732 zeta_caro_desat caro 100.0 2E-33 4.4E-38 283.6 28.9 419 30-475 1-474 (474)
24 TIGR02733 desat_CrtD C-3',4' d 100.0 6.7E-32 1.5E-36 276.4 36.4 426 29-476 2-490 (492)
25 COG3380 Predicted NAD/FAD-depe 100.0 2.3E-32 5E-37 238.2 18.5 325 28-477 1-330 (331)
26 TIGR02730 carot_isom carotene 100.0 1.2E-30 2.7E-35 266.5 33.4 427 29-477 1-491 (493)
27 TIGR02734 crtI_fam phytoene de 100.0 2.4E-31 5.2E-36 273.2 25.5 421 31-477 1-491 (502)
28 COG2907 Predicted NAD/FAD-bind 100.0 1.1E-28 2.4E-33 222.3 23.7 287 26-339 6-311 (447)
29 KOG1276 Protoporphyrinogen oxi 100.0 1.2E-27 2.6E-32 221.8 24.5 401 26-475 9-490 (491)
30 COG1233 Phytoene dehydrogenase 99.9 4.1E-27 9E-32 238.4 18.7 248 27-296 2-281 (487)
31 COG3349 Uncharacterized conser 99.9 1.3E-22 2.7E-27 196.3 17.0 437 29-495 1-480 (485)
32 KOG4254 Phytoene desaturase [C 99.9 1.3E-21 2.8E-26 182.8 21.4 236 233-477 252-545 (561)
33 TIGR00031 UDP-GALP_mutase UDP- 99.8 1.4E-17 3E-22 161.1 25.1 235 28-298 1-249 (377)
34 PTZ00363 rab-GDP dissociation 99.7 9.7E-17 2.1E-21 159.0 18.3 239 26-293 2-287 (443)
35 PF13450 NAD_binding_8: NAD(P) 99.7 2.6E-17 5.7E-22 118.2 6.2 68 33-100 1-68 (68)
36 PRK13977 myosin-cross-reactive 99.7 8.4E-15 1.8E-19 146.4 25.5 74 25-101 19-98 (576)
37 PF01266 DAO: FAD dependent ox 99.5 2.6E-13 5.6E-18 133.8 16.5 42 254-296 161-203 (358)
38 PRK11259 solA N-methyltryptoph 99.5 4.5E-12 9.7E-17 125.9 23.1 50 246-296 154-204 (376)
39 COG2081 Predicted flavoprotein 99.5 1.4E-12 2.9E-17 122.6 16.8 55 239-293 104-164 (408)
40 TIGR01377 soxA_mon sarcosine o 99.5 1.4E-11 3.1E-16 122.5 25.4 50 245-295 149-199 (380)
41 COG0562 Glf UDP-galactopyranos 99.5 8.1E-13 1.8E-17 119.4 14.3 219 28-298 1-243 (374)
42 COG0644 FixC Dehydrogenases (f 99.5 1E-11 2.2E-16 123.6 23.7 43 27-69 2-44 (396)
43 PRK12409 D-amino acid dehydrog 99.5 3.3E-11 7.3E-16 121.0 26.9 40 28-67 1-40 (410)
44 TIGR01988 Ubi-OHases Ubiquinon 99.5 2.3E-11 4.9E-16 121.3 25.2 51 246-296 111-163 (385)
45 PRK08773 2-octaprenyl-3-methyl 99.5 3.3E-11 7.3E-16 120.2 25.9 50 247-296 119-169 (392)
46 PRK09126 hypothetical protein; 99.4 2.3E-11 5.1E-16 121.5 23.8 50 247-296 116-167 (392)
47 PRK10157 putative oxidoreducta 99.4 6.8E-12 1.5E-16 125.9 19.5 40 27-66 4-43 (428)
48 COG1635 THI4 Ribulose 1,5-bisp 99.4 2E-12 4.2E-17 110.7 12.9 69 26-104 28-96 (262)
49 TIGR03329 Phn_aa_oxid putative 99.4 3.7E-12 8.1E-17 129.3 17.4 51 244-296 186-237 (460)
50 PRK07364 2-octaprenyl-6-methox 99.4 7.6E-11 1.6E-15 118.7 25.7 39 25-63 15-53 (415)
51 PF03486 HI0933_like: HI0933-l 99.4 1E-12 2.2E-17 129.1 10.0 41 254-294 123-164 (409)
52 PRK05714 2-octaprenyl-3-methyl 99.4 2.1E-10 4.5E-15 115.0 26.5 52 246-297 117-169 (405)
53 COG0579 Predicted dehydrogenas 99.4 3.8E-12 8.2E-17 123.7 12.6 43 27-69 2-46 (429)
54 TIGR01984 UbiH 2-polyprenyl-6- 99.4 2.2E-10 4.8E-15 114.1 25.7 51 246-296 110-162 (382)
55 PRK07608 ubiquinone biosynthes 99.4 1.9E-10 4.2E-15 114.7 25.2 50 246-296 116-167 (388)
56 PRK00711 D-amino acid dehydrog 99.4 3.7E-10 8E-15 113.8 27.3 39 29-67 1-39 (416)
57 PRK07333 2-octaprenyl-6-methox 99.4 2.7E-10 5.8E-15 114.3 25.0 50 247-296 117-167 (403)
58 PRK05732 2-octaprenyl-6-methox 99.4 3.6E-10 7.8E-15 113.1 25.6 51 246-296 117-169 (395)
59 COG0654 UbiH 2-polyprenyl-6-me 99.4 1.9E-10 4.2E-15 114.2 23.3 53 246-298 109-164 (387)
60 PRK10015 oxidoreductase; Provi 99.3 1.2E-10 2.5E-15 116.9 21.0 39 27-65 4-42 (429)
61 COG0665 DadA Glycine/D-amino a 99.3 1.3E-10 2.9E-15 115.9 21.3 39 26-64 2-40 (387)
62 PRK08850 2-octaprenyl-6-methox 99.3 2.6E-10 5.6E-15 114.3 22.8 51 246-296 116-168 (405)
63 PRK08849 2-octaprenyl-3-methyl 99.3 4.8E-10 1E-14 111.5 24.6 51 247-297 116-168 (384)
64 PRK07494 2-octaprenyl-6-methox 99.3 4.1E-10 8.8E-15 112.3 23.8 52 245-296 115-167 (388)
65 PRK08020 ubiF 2-octaprenyl-3-m 99.3 8.4E-10 1.8E-14 110.2 25.9 51 246-296 117-169 (391)
66 TIGR02032 GG-red-SF geranylger 99.3 1.1E-10 2.4E-15 111.8 18.6 37 29-65 1-37 (295)
67 TIGR01373 soxB sarcosine oxida 99.3 1.6E-10 3.5E-15 115.9 20.4 40 25-65 27-68 (407)
68 PRK08013 oxidoreductase; Provi 99.3 6.8E-10 1.5E-14 111.0 24.7 51 247-297 117-169 (400)
69 PRK11728 hydroxyglutarate oxid 99.3 1.8E-11 3.9E-16 122.0 12.2 51 245-296 153-204 (393)
70 PRK07588 hypothetical protein; 99.3 2.5E-10 5.3E-15 114.0 20.1 50 249-298 111-160 (391)
71 PRK06847 hypothetical protein; 99.3 4.7E-10 1E-14 111.4 21.8 44 253-296 120-163 (375)
72 PRK01747 mnmC bifunctional tRN 99.3 1.5E-09 3.3E-14 115.2 25.2 53 245-297 412-464 (662)
73 PRK06184 hypothetical protein; 99.2 1.6E-09 3.5E-14 111.5 24.0 51 247-297 115-169 (502)
74 TIGR00292 thiazole biosynthesi 99.2 1.5E-10 3.2E-15 106.8 14.6 41 27-67 20-60 (254)
75 PRK11445 putative oxidoreducta 99.2 2.8E-09 6E-14 104.5 24.4 48 249-296 107-157 (351)
76 PRK04176 ribulose-1,5-biphosph 99.2 1.2E-10 2.5E-15 108.0 13.3 42 26-67 23-64 (257)
77 PRK06834 hypothetical protein; 99.2 4.6E-09 1E-13 107.1 25.7 44 254-297 114-157 (488)
78 PRK08244 hypothetical protein; 99.2 3.4E-09 7.3E-14 109.0 24.6 35 28-62 2-36 (493)
79 PRK06185 hypothetical protein; 99.2 3.1E-09 6.6E-14 106.8 23.6 38 25-62 3-40 (407)
80 PRK07045 putative monooxygenas 99.2 7.8E-09 1.7E-13 103.1 25.6 51 247-297 112-166 (388)
81 PF13738 Pyr_redox_3: Pyridine 99.2 7.1E-11 1.5E-15 106.4 9.5 42 254-295 96-137 (203)
82 PRK07190 hypothetical protein; 99.2 4.8E-09 1E-13 106.8 23.8 44 254-297 123-166 (487)
83 KOG2820 FAD-dependent oxidored 99.2 5.7E-09 1.2E-13 95.4 21.3 60 239-298 151-214 (399)
84 PRK11101 glpA sn-glycerol-3-ph 99.2 7.3E-09 1.6E-13 107.1 24.8 40 26-65 4-43 (546)
85 PRK06617 2-octaprenyl-6-methox 99.2 9.1E-09 2E-13 101.9 24.4 51 246-297 109-161 (374)
86 PRK12266 glpD glycerol-3-phosp 99.2 1.4E-08 2.9E-13 104.3 26.2 43 25-67 3-45 (508)
87 PRK05868 hypothetical protein; 99.2 2.3E-08 4.9E-13 98.8 26.2 48 251-298 115-162 (372)
88 PLN00093 geranylgeranyl diphos 99.2 2.3E-08 5E-13 100.6 26.6 42 20-61 31-72 (450)
89 TIGR01989 COQ6 Ubiquinone bios 99.2 1.4E-08 3E-13 102.6 25.0 53 246-298 122-185 (437)
90 PRK06753 hypothetical protein; 99.1 1.4E-08 3.1E-13 100.7 24.1 44 254-297 110-153 (373)
91 PRK06996 hypothetical protein; 99.1 1.1E-08 2.3E-13 102.3 23.2 49 246-294 120-172 (398)
92 TIGR01812 sdhA_frdA_Gneg succi 99.1 9.4E-09 2E-13 107.3 23.7 38 30-67 1-38 (566)
93 TIGR02023 BchP-ChlP geranylger 99.1 2.9E-09 6.3E-14 106.0 18.7 32 29-60 1-32 (388)
94 PTZ00383 malate:quinone oxidor 99.1 1.2E-09 2.5E-14 110.5 15.8 52 245-297 215-274 (497)
95 PRK06183 mhpA 3-(3-hydroxyphen 99.1 1.3E-09 2.8E-14 113.2 16.4 39 26-64 8-46 (538)
96 PF01946 Thi4: Thi4 family; PD 99.1 2.3E-11 5E-16 105.1 2.7 70 27-106 16-85 (230)
97 PRK08243 4-hydroxybenzoate 3-m 99.1 1.4E-08 3.1E-13 101.2 23.2 35 28-62 2-36 (392)
98 PLN02172 flavin-containing mon 99.1 1.1E-09 2.4E-14 110.2 15.1 42 26-67 8-49 (461)
99 PRK06452 sdhA succinate dehydr 99.1 3.1E-08 6.8E-13 102.8 25.7 40 27-66 4-43 (566)
100 PLN02464 glycerol-3-phosphate 99.1 2E-08 4.3E-13 105.2 24.3 40 26-65 69-108 (627)
101 PF05834 Lycopene_cycl: Lycope 99.1 1.1E-07 2.4E-12 93.8 27.9 49 248-296 94-142 (374)
102 PLN02463 lycopene beta cyclase 99.1 3.8E-08 8.2E-13 98.6 24.6 43 253-296 127-169 (447)
103 PRK08132 FAD-dependent oxidore 99.1 2.1E-08 4.6E-13 104.4 23.7 39 25-63 20-58 (547)
104 PRK07236 hypothetical protein; 99.1 2.2E-09 4.7E-14 106.9 14.9 43 254-296 112-154 (386)
105 TIGR03364 HpnW_proposed FAD de 99.1 1.2E-09 2.5E-14 108.1 12.7 37 29-65 1-37 (365)
106 PRK06481 fumarate reductase fl 99.1 4.8E-09 1E-13 107.6 17.3 42 26-67 59-100 (506)
107 TIGR01790 carotene-cycl lycope 99.1 3.3E-08 7.1E-13 98.6 22.2 36 30-65 1-36 (388)
108 PRK06263 sdhA succinate dehydr 99.0 7.2E-08 1.6E-12 100.0 25.2 39 27-66 6-45 (543)
109 PF00890 FAD_binding_2: FAD bi 99.0 2.9E-09 6.3E-14 107.3 14.6 36 30-65 1-36 (417)
110 PRK06126 hypothetical protein; 99.0 4E-08 8.6E-13 102.4 22.6 37 26-62 5-41 (545)
111 PF01494 FAD_binding_3: FAD bi 99.0 2.4E-09 5.1E-14 105.5 12.7 35 29-63 2-36 (356)
112 TIGR01813 flavo_cyto_c flavocy 99.0 5.4E-09 1.2E-13 105.9 15.6 38 30-67 1-39 (439)
113 PRK05257 malate:quinone oxidor 99.0 1.7E-08 3.7E-13 102.5 18.9 42 26-67 3-46 (494)
114 PLN02661 Putative thiazole syn 99.0 3.5E-09 7.7E-14 100.3 12.9 43 26-68 90-133 (357)
115 COG0578 GlpA Glycerol-3-phosph 99.0 1.6E-07 3.5E-12 93.7 25.1 42 26-67 10-51 (532)
116 PTZ00139 Succinate dehydrogena 99.0 1.9E-07 4E-12 97.9 27.0 41 26-66 27-67 (617)
117 TIGR02028 ChlP geranylgeranyl 99.0 6.3E-08 1.4E-12 96.4 22.5 36 29-64 1-36 (398)
118 PRK07538 hypothetical protein; 99.0 1.8E-07 4E-12 93.9 25.8 35 29-63 1-35 (413)
119 COG2072 TrkA Predicted flavopr 99.0 2.3E-09 5E-14 107.4 11.6 56 24-79 4-60 (443)
120 PRK08274 tricarballylate dehyd 99.0 1.5E-08 3.4E-13 103.4 17.7 42 26-67 2-45 (466)
121 TIGR01320 mal_quin_oxido malat 99.0 8.1E-09 1.7E-13 104.7 15.3 39 29-67 1-41 (483)
122 PRK13339 malate:quinone oxidor 99.0 1.2E-08 2.6E-13 102.8 16.0 42 26-67 4-47 (497)
123 PRK08163 salicylate hydroxylas 99.0 4.8E-09 1E-13 105.0 12.8 52 246-297 114-167 (396)
124 PLN00128 Succinate dehydrogena 99.0 1.9E-07 4.1E-12 97.9 24.6 40 27-66 49-88 (635)
125 PLN02927 antheraxanthin epoxid 99.0 6.2E-08 1.3E-12 100.4 20.5 50 247-296 196-248 (668)
126 PLN02697 lycopene epsilon cycl 99.0 5.3E-07 1.1E-11 91.9 26.5 35 26-60 106-140 (529)
127 TIGR01292 TRX_reduct thioredox 98.9 1.1E-08 2.4E-13 98.2 13.5 41 254-295 71-111 (300)
128 PRK13369 glycerol-3-phosphate 98.9 4E-09 8.7E-14 108.3 10.8 42 25-66 3-44 (502)
129 TIGR03219 salicylate_mono sali 98.9 2.1E-08 4.5E-13 100.9 15.5 51 247-297 107-160 (414)
130 PRK12845 3-ketosteroid-delta-1 98.9 5E-08 1.1E-12 100.9 18.5 41 26-67 14-54 (564)
131 PRK08294 phenol 2-monooxygenas 98.9 2.4E-07 5.2E-12 97.4 23.6 36 26-61 30-66 (634)
132 PF06100 Strep_67kDa_ant: Stre 98.9 9.9E-08 2.2E-12 93.2 18.6 72 28-102 2-79 (500)
133 TIGR00275 flavoprotein, HI0933 98.9 2.8E-08 6E-13 98.9 15.1 36 32-67 1-36 (400)
134 PRK09897 hypothetical protein; 98.9 2.9E-08 6.3E-13 101.0 15.1 42 28-69 1-45 (534)
135 PRK06134 putative FAD-binding 98.9 1E-07 2.2E-12 99.4 19.1 44 25-68 9-52 (581)
136 PF00996 GDI: GDP dissociation 98.9 4.1E-08 8.9E-13 96.5 14.6 235 25-291 1-284 (438)
137 PRK07121 hypothetical protein; 98.9 7.8E-08 1.7E-12 98.7 17.4 41 27-67 19-59 (492)
138 KOG1399 Flavin-containing mono 98.9 3.1E-08 6.6E-13 98.0 13.4 44 26-69 4-47 (448)
139 PF13454 NAD_binding_9: FAD-NA 98.9 4.2E-08 9E-13 83.9 12.5 48 247-294 107-155 (156)
140 PRK07573 sdhA succinate dehydr 98.9 2.7E-08 5.9E-13 104.4 13.7 39 27-65 34-72 (640)
141 PF00743 FMO-like: Flavin-bind 98.9 2E-08 4.2E-13 102.7 12.1 40 29-68 2-41 (531)
142 TIGR01789 lycopene_cycl lycope 98.9 3.2E-07 7E-12 90.2 20.3 37 30-66 1-39 (370)
143 PRK06175 L-aspartate oxidase; 98.8 6.4E-08 1.4E-12 97.3 15.4 39 27-66 3-41 (433)
144 PRK05249 soluble pyridine nucl 98.8 9.7E-08 2.1E-12 97.4 16.9 42 26-67 3-44 (461)
145 PRK07804 L-aspartate oxidase; 98.8 6.4E-08 1.4E-12 100.1 15.4 41 26-66 14-54 (541)
146 PRK12844 3-ketosteroid-delta-1 98.8 2.5E-07 5.5E-12 95.9 19.2 41 27-67 5-45 (557)
147 PRK12837 3-ketosteroid-delta-1 98.8 2E-07 4.3E-12 96.0 18.2 41 26-67 5-45 (513)
148 PRK05976 dihydrolipoamide dehy 98.8 1.3E-07 2.9E-12 96.5 16.8 42 26-68 2-43 (472)
149 PRK12842 putative succinate de 98.8 1.2E-07 2.5E-12 99.1 16.7 43 26-68 7-49 (574)
150 TIGR01424 gluta_reduc_2 glutat 98.8 1.4E-07 3E-12 95.6 16.2 40 28-68 2-41 (446)
151 PRK08071 L-aspartate oxidase; 98.8 1E-07 2.2E-12 97.8 15.4 38 28-66 3-40 (510)
152 PRK12839 hypothetical protein; 98.8 2.7E-07 5.9E-12 95.7 18.0 44 25-68 5-48 (572)
153 KOG2614 Kynurenine 3-monooxyge 98.8 1E-06 2.2E-11 83.7 19.8 36 28-63 2-37 (420)
154 PRK05192 tRNA uridine 5-carbox 98.8 7.8E-08 1.7E-12 97.9 13.0 40 27-66 3-43 (618)
155 PRK15317 alkyl hydroperoxide r 98.8 1.1E-07 2.5E-12 97.9 14.1 43 254-296 280-322 (517)
156 PRK06467 dihydrolipoamide dehy 98.8 1.6E-07 3.5E-12 95.7 14.9 42 26-67 2-43 (471)
157 TIGR00551 nadB L-aspartate oxi 98.8 1.7E-07 3.7E-12 95.9 15.1 38 28-66 2-39 (488)
158 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 1.2E-07 2.7E-12 94.2 13.7 36 27-62 1-36 (390)
159 PRK07803 sdhA succinate dehydr 98.7 1.5E-07 3.3E-12 98.8 14.9 39 27-65 7-45 (626)
160 PRK12835 3-ketosteroid-delta-1 98.7 4.1E-07 8.9E-12 94.8 17.9 42 25-66 8-49 (584)
161 PRK07843 3-ketosteroid-delta-1 98.7 5.9E-07 1.3E-11 93.3 18.9 42 26-67 5-46 (557)
162 PRK12834 putative FAD-binding 98.7 3.5E-07 7.6E-12 95.0 17.2 41 27-67 3-45 (549)
163 TIGR03140 AhpF alkyl hydropero 98.7 1.2E-07 2.7E-12 97.6 13.6 42 254-295 281-322 (515)
164 COG0492 TrxB Thioredoxin reduc 98.7 9.3E-08 2E-12 90.3 11.6 40 27-67 2-42 (305)
165 PRK05945 sdhA succinate dehydr 98.7 1.7E-07 3.6E-12 97.9 14.3 39 28-66 3-43 (575)
166 PRK08401 L-aspartate oxidase; 98.7 3E-07 6.6E-12 93.5 15.7 34 28-61 1-34 (466)
167 PRK07818 dihydrolipoamide dehy 98.7 2.3E-07 4.9E-12 94.7 14.5 40 27-67 3-42 (466)
168 PRK06416 dihydrolipoamide dehy 98.7 3.5E-07 7.5E-12 93.4 15.8 40 27-67 3-42 (462)
169 PRK06475 salicylate hydroxylas 98.7 2.1E-07 4.4E-12 93.2 13.8 53 246-298 112-169 (400)
170 PRK07395 L-aspartate oxidase; 98.7 2.7E-07 5.9E-12 95.3 14.4 41 25-66 6-46 (553)
171 TIGR03143 AhpF_homolog putativ 98.7 2.2E-07 4.9E-12 96.4 13.7 42 26-68 2-43 (555)
172 PRK12843 putative FAD-binding 98.7 9.3E-07 2E-11 92.3 18.1 43 26-68 14-56 (578)
173 PRK08958 sdhA succinate dehydr 98.7 4.3E-07 9.3E-12 94.7 15.5 40 27-66 6-45 (588)
174 PLN02815 L-aspartate oxidase 98.7 3.5E-07 7.6E-12 95.0 14.7 39 27-66 28-66 (594)
175 PTZ00367 squalene epoxidase; P 98.7 4.7E-06 1E-10 86.0 22.4 35 27-61 32-66 (567)
176 PRK08275 putative oxidoreducta 98.7 3.5E-07 7.7E-12 95.0 14.1 39 27-65 8-48 (554)
177 PRK06069 sdhA succinate dehydr 98.7 7.7E-07 1.7E-11 93.0 16.7 40 27-66 4-46 (577)
178 COG1249 Lpd Pyruvate/2-oxoglut 98.6 7.2E-07 1.6E-11 88.8 15.4 42 26-67 2-43 (454)
179 PRK07512 L-aspartate oxidase; 98.6 2.9E-07 6.2E-12 94.6 13.0 35 26-62 7-41 (513)
180 PRK06854 adenylylsulfate reduc 98.6 9.5E-07 2.1E-11 92.5 16.7 38 27-64 10-49 (608)
181 PRK07057 sdhA succinate dehydr 98.6 1.1E-06 2.3E-11 91.9 16.9 41 26-66 10-50 (591)
182 TIGR01811 sdhA_Bsu succinate d 98.6 4.8E-07 1E-11 94.5 13.8 35 31-65 1-35 (603)
183 PRK09078 sdhA succinate dehydr 98.6 1.2E-06 2.6E-11 91.6 16.8 40 27-66 11-50 (598)
184 PRK09231 fumarate reductase fl 98.6 6.9E-07 1.5E-11 93.2 14.9 40 27-66 3-44 (582)
185 TIGR01176 fum_red_Fp fumarate 98.6 9E-07 1.9E-11 92.1 15.0 40 28-67 3-44 (580)
186 TIGR02485 CobZ_N-term precorri 98.6 8.4E-07 1.8E-11 89.6 14.4 34 33-66 1-36 (432)
187 PF01134 GIDA: Glucose inhibit 98.6 1.6E-07 3.5E-12 90.7 8.3 42 254-296 110-152 (392)
188 PTZ00306 NADH-dependent fumara 98.6 1.1E-06 2.4E-11 98.7 15.4 42 26-67 407-448 (1167)
189 PRK08641 sdhA succinate dehydr 98.5 1.6E-06 3.5E-11 90.6 15.4 40 27-66 2-41 (589)
190 KOG2844 Dimethylglycine dehydr 98.5 3.2E-07 6.9E-12 91.3 9.2 42 254-296 201-243 (856)
191 KOG2404 Fumarate reductase, fl 98.5 7.2E-07 1.6E-11 81.2 10.6 38 30-67 11-48 (477)
192 PRK08626 fumarate reductase fl 98.5 1.5E-06 3.2E-11 91.6 14.7 39 27-65 4-42 (657)
193 KOG2853 Possible oxidoreductas 98.5 1.1E-05 2.4E-10 74.3 17.8 39 25-63 83-125 (509)
194 PRK08205 sdhA succinate dehydr 98.5 4.1E-06 8.9E-11 87.6 17.3 38 27-65 4-41 (583)
195 PRK12779 putative bifunctional 98.5 1.9E-07 4.2E-12 101.7 6.3 43 26-68 304-346 (944)
196 PRK09077 L-aspartate oxidase; 98.4 4.2E-06 9.2E-11 86.6 15.1 40 26-66 6-45 (536)
197 TIGR03315 Se_ygfK putative sel 98.4 2.6E-07 5.7E-12 99.8 6.1 44 26-69 535-578 (1012)
198 PRK12831 putative oxidoreducta 98.4 3.7E-07 7.9E-12 92.6 6.7 44 25-68 137-180 (464)
199 PF06039 Mqo: Malate:quinone o 98.4 9.4E-06 2E-10 78.8 15.7 41 27-67 2-44 (488)
200 PLN02852 ferredoxin-NADP+ redu 98.4 5.3E-07 1.2E-11 90.8 6.9 44 26-69 24-69 (491)
201 PRK06115 dihydrolipoamide dehy 98.4 3.5E-07 7.7E-12 93.1 5.5 41 27-67 2-42 (466)
202 PRK07845 flavoprotein disulfid 98.4 1.3E-05 2.8E-10 81.8 16.3 39 28-67 1-39 (466)
203 PF07156 Prenylcys_lyase: Pren 98.4 8.4E-05 1.8E-09 72.2 20.9 102 193-296 75-187 (368)
204 TIGR01350 lipoamide_DH dihydro 98.4 4.5E-07 9.7E-12 92.6 5.4 41 28-69 1-41 (461)
205 COG1148 HdrA Heterodisulfide r 98.4 4.2E-07 9.1E-12 87.3 4.8 43 27-69 123-165 (622)
206 PRK07251 pyridine nucleotide-d 98.3 5.3E-07 1.1E-11 91.3 5.7 42 27-68 2-44 (438)
207 PRK06116 glutathione reductase 98.3 4.6E-07 1E-11 92.1 5.0 40 27-67 3-42 (450)
208 TIGR01421 gluta_reduc_1 glutat 98.3 4.8E-07 1E-11 91.7 5.0 41 27-68 1-41 (450)
209 PRK08010 pyridine nucleotide-d 98.3 5.8E-07 1.2E-11 91.1 5.6 42 27-68 2-44 (441)
210 PRK13800 putative oxidoreducta 98.3 1.1E-05 2.4E-10 88.6 15.7 37 26-62 11-47 (897)
211 PRK09853 putative selenate red 98.3 6.4E-07 1.4E-11 96.4 5.9 44 26-69 537-580 (1019)
212 TIGR03197 MnmC_Cterm tRNA U-34 98.3 1.9E-05 4.2E-10 78.4 16.0 54 244-297 138-191 (381)
213 PRK06370 mercuric reductase; V 98.3 8.4E-07 1.8E-11 90.5 5.8 43 25-68 2-44 (463)
214 TIGR00136 gidA glucose-inhibit 98.3 1.3E-05 2.8E-10 81.9 14.2 39 29-67 1-39 (617)
215 PRK06292 dihydrolipoamide dehy 98.3 8.4E-07 1.8E-11 90.5 5.5 41 27-68 2-42 (460)
216 PF12831 FAD_oxidored: FAD dep 98.3 6.5E-07 1.4E-11 90.0 4.5 38 30-67 1-38 (428)
217 KOG2415 Electron transfer flav 98.3 9.1E-07 2E-11 83.4 4.9 44 26-69 74-123 (621)
218 PTZ00188 adrenodoxin reductase 98.3 1.7E-06 3.6E-11 85.9 6.9 44 26-69 37-81 (506)
219 KOG2665 Predicted FAD-dependen 98.3 3.9E-06 8.4E-11 76.4 8.5 44 26-69 46-91 (453)
220 PRK12769 putative oxidoreducta 98.3 1.2E-06 2.6E-11 93.0 6.3 44 26-69 325-368 (654)
221 TIGR02352 thiamin_ThiO glycine 98.3 8.2E-05 1.8E-09 72.6 18.8 53 244-297 140-194 (337)
222 TIGR01316 gltA glutamate synth 98.3 1.6E-06 3.4E-11 87.9 6.6 43 26-68 131-173 (449)
223 PRK12775 putative trifunctiona 98.2 1.1E-06 2.5E-11 96.6 5.9 42 27-68 429-470 (1006)
224 COG1053 SdhA Succinate dehydro 98.2 2.3E-05 5.1E-10 80.4 14.3 43 25-67 3-45 (562)
225 PRK14694 putative mercuric red 98.2 1.7E-06 3.7E-11 88.3 5.6 43 25-68 3-45 (468)
226 PRK12778 putative bifunctional 98.2 2.1E-06 4.6E-11 92.6 6.5 43 26-68 429-471 (752)
227 COG0493 GltD NADPH-dependent g 98.2 2.2E-06 4.7E-11 85.5 6.0 45 25-69 120-164 (457)
228 PRK10262 thioredoxin reductase 98.2 1.9E-06 4.2E-11 83.4 5.5 43 25-68 3-45 (321)
229 PRK12810 gltD glutamate syntha 98.2 2.7E-06 5.9E-11 86.8 6.6 43 26-68 141-183 (471)
230 PLN02985 squalene monooxygenas 98.2 2.2E-06 4.8E-11 87.8 5.9 40 23-62 38-77 (514)
231 PRK14727 putative mercuric red 98.2 2.5E-06 5.5E-11 87.2 6.1 43 26-68 14-56 (479)
232 TIGR02053 MerA mercuric reduct 98.2 1.9E-06 4.2E-11 87.9 5.2 38 29-67 1-38 (463)
233 PRK06327 dihydrolipoamide dehy 98.2 2.2E-06 4.8E-11 87.6 5.6 42 26-67 2-49 (475)
234 PRK09564 coenzyme A disulfide 98.2 1.3E-05 2.8E-10 81.5 10.9 43 253-295 69-114 (444)
235 PTZ00052 thioredoxin reductase 98.1 2.7E-06 6E-11 87.2 5.7 50 246-295 227-277 (499)
236 PRK12814 putative NADPH-depend 98.1 3.5E-06 7.6E-11 89.2 6.7 43 26-68 191-233 (652)
237 TIGR03452 mycothione_red mycot 98.1 3.5E-05 7.6E-10 78.2 13.6 37 28-67 2-38 (452)
238 PRK06567 putative bifunctional 98.1 3E-06 6.4E-11 90.3 5.9 41 26-66 381-421 (1028)
239 PRK12809 putative oxidoreducta 98.1 3.3E-06 7.1E-11 89.3 6.2 44 26-69 308-351 (639)
240 TIGR01318 gltD_gamma_fam gluta 98.1 3.6E-06 7.9E-11 85.5 6.2 44 26-69 139-182 (467)
241 PRK13748 putative mercuric red 98.1 2.7E-06 5.8E-11 89.2 5.4 41 27-68 97-137 (561)
242 PRK05335 tRNA (uracil-5-)-meth 98.1 3.1E-06 6.7E-11 82.7 5.3 37 28-64 2-38 (436)
243 PRK11749 dihydropyrimidine deh 98.1 3.7E-06 8E-11 85.5 6.2 43 26-68 138-180 (457)
244 PTZ00058 glutathione reductase 98.1 2.9E-06 6.3E-11 87.5 5.4 41 26-67 46-86 (561)
245 COG1252 Ndh NADH dehydrogenase 98.1 5.4E-05 1.2E-09 73.7 13.8 36 27-62 2-39 (405)
246 PRK07846 mycothione reductase; 98.1 5.8E-05 1.3E-09 76.6 14.7 37 28-67 1-37 (451)
247 KOG2960 Protein involved in th 98.1 1.1E-06 2.3E-11 75.2 1.2 67 27-103 75-143 (328)
248 KOG0399 Glutamate synthase [Am 98.1 4.3E-06 9.3E-11 87.7 5.7 43 26-68 1783-1825(2142)
249 PLN02507 glutathione reductase 98.1 4.4E-06 9.5E-11 85.6 5.5 43 26-68 23-74 (499)
250 PF04820 Trp_halogenase: Trypt 98.1 1E-05 2.2E-10 81.7 7.8 43 253-296 167-211 (454)
251 TIGR01423 trypano_reduc trypan 98.0 5.7E-06 1.2E-10 84.3 5.5 41 27-67 2-51 (486)
252 COG2509 Uncharacterized FAD-de 98.0 3.7E-05 7.9E-10 74.1 10.5 51 245-295 177-229 (486)
253 TIGR01317 GOGAT_sm_gam glutama 98.0 8.7E-06 1.9E-10 83.1 6.6 42 27-68 142-183 (485)
254 TIGR01372 soxA sarcosine oxida 98.0 6.7E-06 1.4E-10 91.1 5.6 43 27-69 162-204 (985)
255 KOG0042 Glycerol-3-phosphate d 98.0 2.3E-05 5E-10 76.7 8.4 41 26-66 65-105 (680)
256 PLN02546 glutathione reductase 98.0 9.5E-06 2.1E-10 83.8 6.2 41 27-67 78-127 (558)
257 PTZ00153 lipoamide dehydrogena 98.0 1E-05 2.2E-10 84.8 6.3 40 28-67 116-156 (659)
258 COG4529 Uncharacterized protei 98.0 3.7E-05 8E-10 75.1 9.4 40 28-67 1-43 (474)
259 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 7.9E-06 1.7E-10 80.4 4.9 37 29-65 1-37 (433)
260 KOG1298 Squalene monooxygenase 98.0 9.5E-06 2.1E-10 76.0 4.8 36 25-60 42-77 (509)
261 COG0029 NadB Aspartate oxidase 98.0 8.2E-05 1.8E-09 72.7 11.4 33 30-63 9-41 (518)
262 PRK09754 phenylpropionate diox 98.0 8.5E-05 1.8E-09 74.2 12.1 42 253-295 199-240 (396)
263 PRK12771 putative glutamate sy 98.0 1.3E-05 2.9E-10 83.7 6.5 44 25-68 134-177 (564)
264 KOG1439 RAB proteins geranylge 97.9 0.00016 3.6E-09 68.4 12.9 44 27-70 3-46 (440)
265 TIGR02462 pyranose_ox pyranose 97.9 1.5E-05 3.3E-10 81.2 6.6 37 29-65 1-37 (544)
266 PRK12770 putative glutamate sy 97.9 1.9E-05 4E-10 77.6 6.8 45 25-69 15-59 (352)
267 COG3075 GlpB Anaerobic glycero 97.9 9.8E-06 2.1E-10 74.4 4.4 33 27-59 1-33 (421)
268 PF00070 Pyr_redox: Pyridine n 97.9 2.3E-05 4.9E-10 58.5 5.7 34 30-63 1-34 (80)
269 PF00732 GMC_oxred_N: GMC oxid 97.9 8.4E-06 1.8E-10 78.1 4.2 35 29-63 1-36 (296)
270 COG4716 Myosin-crossreactive a 97.9 4.1E-05 8.9E-10 71.5 8.1 45 25-69 19-67 (587)
271 PF07992 Pyr_redox_2: Pyridine 97.9 1.4E-05 3.1E-10 71.6 5.1 32 30-61 1-32 (201)
272 COG3573 Predicted oxidoreducta 97.9 1.8E-05 4E-10 72.7 5.4 42 26-67 3-46 (552)
273 PRK04965 NADH:flavorubredoxin 97.8 0.00018 3.9E-09 71.4 12.2 43 253-295 196-238 (377)
274 KOG0405 Pyridine nucleotide-di 97.8 0.00087 1.9E-08 62.4 15.4 43 25-67 17-59 (478)
275 PRK13984 putative oxidoreducta 97.8 2.9E-05 6.3E-10 82.0 6.8 44 25-68 280-323 (604)
276 PRK05329 anaerobic glycerol-3- 97.8 2.2E-05 4.7E-10 78.0 4.9 35 27-61 1-35 (422)
277 TIGR01438 TGR thioredoxin and 97.8 2.4E-05 5.1E-10 80.0 5.2 40 28-67 2-49 (484)
278 PRK06912 acoL dihydrolipoamide 97.8 2.6E-05 5.7E-10 79.4 5.2 38 29-67 1-38 (458)
279 PRK08255 salicylyl-CoA 5-hydro 97.8 2.8E-05 6.1E-10 83.9 5.2 34 29-62 1-36 (765)
280 PRK07846 mycothione reductase; 97.8 0.00027 5.8E-09 71.7 12.0 45 252-296 218-262 (451)
281 TIGR01350 lipoamide_DH dihydro 97.7 0.00029 6.4E-09 72.0 12.1 43 253-295 224-268 (461)
282 PRK05249 soluble pyridine nucl 97.7 0.00035 7.6E-09 71.4 12.6 43 253-295 229-271 (461)
283 COG5044 MRS6 RAB proteins gera 97.7 0.00098 2.1E-08 62.6 13.6 44 27-70 5-48 (434)
284 KOG1800 Ferredoxin/adrenodoxin 97.7 6.4E-05 1.4E-09 70.5 5.7 44 26-69 18-63 (468)
285 PRK06416 dihydrolipoamide dehy 97.7 0.00037 8E-09 71.2 12.0 44 253-296 226-272 (462)
286 PRK02106 choline dehydrogenase 97.7 4.7E-05 1E-09 79.6 5.3 36 26-61 3-39 (560)
287 KOG2852 Possible oxidoreductas 97.7 2.2E-05 4.8E-10 70.7 2.2 42 26-67 8-55 (380)
288 TIGR02061 aprA adenosine phosp 97.6 5.3E-05 1.2E-09 79.0 4.9 33 30-62 1-37 (614)
289 TIGR03452 mycothione_red mycot 97.6 0.00044 9.5E-09 70.3 11.4 44 252-295 221-264 (452)
290 TIGR03377 glycerol3P_GlpA glyc 97.6 0.011 2.3E-07 61.4 21.4 45 252-296 140-190 (516)
291 COG0445 GidA Flavin-dependent 97.6 0.00049 1.1E-08 68.1 10.6 41 27-67 3-43 (621)
292 PRK07845 flavoprotein disulfid 97.6 0.00055 1.2E-08 69.9 11.5 43 253-295 231-273 (466)
293 PRK06116 glutathione reductase 97.6 0.00093 2E-08 68.0 12.8 43 253-295 221-264 (450)
294 PRK07251 pyridine nucleotide-d 97.6 0.00078 1.7E-08 68.3 12.1 36 28-63 157-192 (438)
295 TIGR01421 gluta_reduc_1 glutat 97.5 0.00095 2.1E-08 67.8 12.4 35 28-62 166-200 (450)
296 PLN02507 glutathione reductase 97.5 0.0012 2.6E-08 67.9 12.7 43 253-295 257-299 (499)
297 TIGR01424 gluta_reduc_2 glutat 97.5 0.0011 2.4E-08 67.3 12.3 43 253-295 220-262 (446)
298 TIGR02374 nitri_red_nirB nitri 97.4 0.00037 8E-09 75.6 8.3 42 253-296 67-108 (785)
299 TIGR03378 glycerol3P_GlpB glyc 97.4 0.00015 3.2E-09 71.3 4.7 52 245-296 267-322 (419)
300 TIGR02053 MerA mercuric reduct 97.4 0.0013 2.7E-08 67.3 11.6 36 28-63 166-201 (463)
301 KOG1335 Dihydrolipoamide dehyd 97.4 0.00017 3.6E-09 67.9 4.4 42 27-68 38-79 (506)
302 PRK06327 dihydrolipoamide dehy 97.4 0.0017 3.6E-08 66.6 12.3 35 28-62 183-217 (475)
303 PRK07818 dihydrolipoamide dehy 97.4 0.0017 3.6E-08 66.5 12.0 35 28-62 172-206 (466)
304 COG2303 BetA Choline dehydroge 97.4 0.00016 3.4E-09 74.8 4.6 36 25-60 4-39 (542)
305 TIGR02374 nitri_red_nirB nitri 97.4 0.0013 2.9E-08 71.3 11.6 42 253-294 195-236 (785)
306 PRK06370 mercuric reductase; V 97.4 0.0021 4.6E-08 65.7 12.5 36 28-63 171-206 (463)
307 PRK05976 dihydrolipoamide dehy 97.3 0.0023 5E-08 65.5 12.4 35 28-62 180-214 (472)
308 PRK13512 coenzyme A disulfide 97.3 0.00028 6E-09 71.5 5.1 37 28-64 1-39 (438)
309 TIGR01810 betA choline dehydro 97.3 0.0002 4.3E-09 74.4 4.1 32 30-61 1-33 (532)
310 PLN02785 Protein HOTHEAD 97.3 0.00029 6.2E-09 73.4 5.2 41 20-61 47-87 (587)
311 PRK06912 acoL dihydrolipoamide 97.3 0.0024 5.2E-08 65.1 11.8 35 28-62 170-204 (458)
312 PRK09564 coenzyme A disulfide 97.3 0.0026 5.5E-08 64.8 12.1 35 28-62 149-183 (444)
313 PF13434 K_oxygenase: L-lysine 97.3 0.00016 3.4E-09 70.1 2.9 35 28-62 2-37 (341)
314 PRK06115 dihydrolipoamide dehy 97.3 0.0031 6.7E-08 64.4 12.4 36 28-63 174-209 (466)
315 KOG3855 Monooxygenase involved 97.3 0.0034 7.5E-08 60.0 11.3 36 26-61 34-73 (481)
316 PRK08010 pyridine nucleotide-d 97.2 0.0034 7.4E-08 63.7 12.4 42 253-295 212-253 (441)
317 PRK14727 putative mercuric red 97.2 0.0042 9E-08 63.7 13.0 43 253-296 241-283 (479)
318 TIGR03385 CoA_CoA_reduc CoA-di 97.2 0.0033 7.2E-08 63.5 11.9 35 28-62 137-171 (427)
319 PTZ00052 thioredoxin reductase 97.2 0.0039 8.5E-08 64.1 12.2 31 29-59 183-213 (499)
320 PRK09754 phenylpropionate diox 97.2 0.00044 9.5E-09 69.1 5.1 42 253-296 71-112 (396)
321 PRK14989 nitrite reductase sub 97.2 0.0033 7.2E-08 68.4 12.0 42 253-294 200-243 (847)
322 PTZ00318 NADH dehydrogenase-li 97.2 0.00053 1.1E-08 69.1 5.5 38 25-62 7-44 (424)
323 PRK06467 dihydrolipoamide dehy 97.2 0.003 6.5E-08 64.6 11.0 35 28-62 174-208 (471)
324 TIGR01423 trypano_reduc trypan 97.1 0.005 1.1E-07 63.0 12.3 43 253-295 244-287 (486)
325 PRK14694 putative mercuric red 97.1 0.0052 1.1E-07 62.8 12.4 43 253-296 231-273 (468)
326 PRK13748 putative mercuric red 97.1 0.0051 1.1E-07 64.6 12.5 42 253-295 323-364 (561)
327 COG1206 Gid NAD(FAD)-utilizing 97.1 0.0005 1.1E-08 63.4 3.8 36 27-62 2-37 (439)
328 KOG2311 NAD/FAD-utilizing prot 97.1 0.0046 1E-07 60.1 10.3 35 26-60 26-60 (679)
329 TIGR01438 TGR thioredoxin and 97.1 0.0058 1.3E-07 62.6 11.8 43 253-295 233-278 (484)
330 PTZ00058 glutathione reductase 96.9 0.011 2.4E-07 61.4 12.3 35 28-62 237-271 (561)
331 COG0446 HcaD Uncharacterized N 96.9 0.0012 2.6E-08 66.4 4.9 40 28-67 136-175 (415)
332 PTZ00318 NADH dehydrogenase-li 96.8 0.0096 2.1E-07 60.0 10.4 38 253-294 241-278 (424)
333 PLN02546 glutathione reductase 96.7 0.017 3.7E-07 60.0 12.1 35 28-62 252-286 (558)
334 KOG4716 Thioredoxin reductase 96.7 0.0019 4E-08 60.0 3.9 35 25-59 16-50 (503)
335 PRK04965 NADH:flavorubredoxin 96.7 0.0023 5E-08 63.5 5.0 34 28-61 2-37 (377)
336 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.0035 7.5E-08 53.5 4.5 32 30-61 1-32 (157)
337 TIGR03862 flavo_PP4765 unchara 96.5 0.092 2E-06 51.4 14.7 51 242-294 83-139 (376)
338 PF13434 K_oxygenase: L-lysine 96.4 0.052 1.1E-06 52.7 12.2 42 254-295 293-340 (341)
339 TIGR03169 Nterm_to_SelD pyridi 96.3 0.004 8.7E-08 61.5 4.4 33 30-62 1-36 (364)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 96.3 0.0049 1.1E-07 54.0 4.3 33 29-61 1-33 (185)
341 KOG3923 D-aspartate oxidase [A 96.3 0.0033 7.1E-08 57.5 3.1 33 27-59 2-41 (342)
342 PRK01438 murD UDP-N-acetylmura 96.3 0.0072 1.6E-07 62.1 5.9 35 27-61 15-49 (480)
343 PF02737 3HCDH_N: 3-hydroxyacy 96.2 0.0075 1.6E-07 52.7 5.0 32 30-61 1-32 (180)
344 COG3634 AhpF Alkyl hydroperoxi 96.1 0.003 6.4E-08 58.9 1.9 40 25-66 208-247 (520)
345 PRK02705 murD UDP-N-acetylmura 96.0 0.0082 1.8E-07 61.3 4.8 34 30-63 2-35 (459)
346 KOG1238 Glucose dehydrogenase/ 95.9 0.0097 2.1E-07 60.6 4.8 38 25-62 54-92 (623)
347 PRK14989 nitrite reductase sub 95.8 0.012 2.6E-07 64.2 5.5 37 28-64 3-43 (847)
348 KOG1335 Dihydrolipoamide dehyd 95.8 0.042 9.2E-07 52.3 8.1 38 28-65 211-248 (506)
349 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.012 2.6E-07 56.5 4.8 33 29-61 3-35 (308)
350 KOG0404 Thioredoxin reductase 95.6 0.021 4.6E-07 50.0 5.1 42 28-69 8-53 (322)
351 PF02558 ApbA: Ketopantoate re 95.6 0.021 4.6E-07 48.3 4.9 31 31-61 1-31 (151)
352 PRK07819 3-hydroxybutyryl-CoA 95.4 0.024 5.2E-07 53.7 5.1 34 28-61 5-38 (286)
353 COG0569 TrkA K+ transport syst 95.4 0.021 4.5E-07 51.9 4.5 33 29-61 1-33 (225)
354 PRK08293 3-hydroxybutyryl-CoA 95.3 0.026 5.6E-07 53.6 4.9 34 28-61 3-36 (287)
355 PRK06249 2-dehydropantoate 2-r 95.2 0.032 7E-07 53.7 5.6 36 26-61 3-38 (313)
356 PRK07530 3-hydroxybutyryl-CoA 95.2 0.032 6.9E-07 53.2 5.5 34 28-61 4-37 (292)
357 COG1249 Lpd Pyruvate/2-oxoglut 95.2 0.029 6.3E-07 56.4 5.3 42 253-294 227-270 (454)
358 PRK07066 3-hydroxybutyryl-CoA 95.2 0.033 7.2E-07 53.3 5.4 34 28-61 7-40 (321)
359 COG0686 Ald Alanine dehydrogen 95.2 0.021 4.6E-07 52.7 3.9 46 26-71 166-219 (371)
360 COG1004 Ugd Predicted UDP-gluc 95.2 0.024 5.1E-07 54.5 4.3 33 29-61 1-33 (414)
361 PRK08229 2-dehydropantoate 2-r 95.1 0.029 6.2E-07 54.8 4.9 33 28-60 2-34 (341)
362 PF01262 AlaDh_PNT_C: Alanine 95.1 0.04 8.7E-07 47.6 5.2 36 26-61 18-53 (168)
363 PF13738 Pyr_redox_3: Pyridine 95.1 0.037 8.1E-07 49.4 5.2 37 25-61 164-200 (203)
364 PRK13512 coenzyme A disulfide 95.1 0.028 6.1E-07 56.9 4.8 36 28-63 148-183 (438)
365 PRK14106 murD UDP-N-acetylmura 95.1 0.033 7.2E-07 56.7 5.3 35 27-61 4-38 (450)
366 TIGR03169 Nterm_to_SelD pyridi 95.0 0.18 3.9E-06 49.7 10.4 39 253-295 204-242 (364)
367 PRK06292 dihydrolipoamide dehy 95.0 0.033 7.2E-07 56.9 5.3 36 28-63 169-204 (460)
368 PRK09260 3-hydroxybutyryl-CoA 95.0 0.028 6.1E-07 53.4 4.4 33 29-61 2-34 (288)
369 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.035 7.6E-07 55.6 4.9 34 28-61 3-36 (415)
370 PRK05675 sdhA succinate dehydr 94.9 0.23 5E-06 52.0 11.1 50 245-294 130-187 (570)
371 PLN02545 3-hydroxybutyryl-CoA 94.7 0.055 1.2E-06 51.6 5.4 35 27-61 3-37 (295)
372 PF03446 NAD_binding_2: NAD bi 94.6 0.056 1.2E-06 46.4 4.9 34 28-61 1-34 (163)
373 PRK14618 NAD(P)H-dependent gly 94.6 0.056 1.2E-06 52.5 5.4 34 28-61 4-37 (328)
374 PRK05708 2-dehydropantoate 2-r 94.6 0.049 1.1E-06 52.1 4.9 33 28-60 2-34 (305)
375 cd01080 NAD_bind_m-THF_DH_Cycl 94.6 0.067 1.4E-06 46.0 5.2 36 25-60 41-77 (168)
376 cd05292 LDH_2 A subgroup of L- 94.6 0.054 1.2E-06 51.9 5.1 33 29-61 1-35 (308)
377 PRK06522 2-dehydropantoate 2-r 94.6 0.049 1.1E-06 52.2 4.9 32 29-60 1-32 (304)
378 TIGR03140 AhpF alkyl hydropero 94.5 0.054 1.2E-06 56.1 5.3 36 27-62 351-386 (515)
379 PRK05808 3-hydroxybutyryl-CoA 94.4 0.053 1.2E-06 51.3 4.7 33 29-61 4-36 (282)
380 PRK06035 3-hydroxyacyl-CoA deh 94.4 0.05 1.1E-06 51.8 4.5 33 29-61 4-36 (291)
381 TIGR01763 MalateDH_bact malate 94.4 0.064 1.4E-06 51.2 5.2 33 29-61 2-35 (305)
382 KOG2755 Oxidoreductase [Genera 94.4 0.024 5.2E-07 51.0 2.1 33 30-62 1-35 (334)
383 TIGR01470 cysG_Nterm siroheme 94.4 0.074 1.6E-06 47.5 5.2 35 27-61 8-42 (205)
384 PRK12921 2-dehydropantoate 2-r 94.4 0.054 1.2E-06 51.9 4.7 31 29-59 1-31 (305)
385 PRK06130 3-hydroxybutyryl-CoA 94.3 0.067 1.5E-06 51.5 5.2 34 28-61 4-37 (311)
386 PRK04148 hypothetical protein; 94.3 0.06 1.3E-06 43.9 4.0 35 27-62 16-50 (134)
387 PF13241 NAD_binding_7: Putati 94.3 0.067 1.5E-06 41.9 4.2 34 27-60 6-39 (103)
388 PTZ00153 lipoamide dehydrogena 94.2 0.059 1.3E-06 57.0 4.9 36 28-63 312-347 (659)
389 KOG3851 Sulfide:quinone oxidor 94.2 0.044 9.5E-07 50.8 3.4 37 25-61 36-74 (446)
390 PRK00094 gpsA NAD(P)H-dependen 94.2 0.074 1.6E-06 51.5 5.2 33 29-61 2-34 (325)
391 TIGR03026 NDP-sugDHase nucleot 94.1 0.058 1.3E-06 54.1 4.4 34 29-62 1-34 (411)
392 TIGR01816 sdhA_forward succina 94.1 1.6 3.6E-05 45.7 15.3 50 245-294 123-179 (565)
393 PRK14619 NAD(P)H-dependent gly 94.1 0.091 2E-06 50.4 5.5 35 27-61 3-37 (308)
394 COG0771 MurD UDP-N-acetylmuram 94.0 0.062 1.3E-06 53.5 4.3 36 28-63 7-42 (448)
395 PRK15317 alkyl hydroperoxide r 94.0 0.081 1.8E-06 54.9 5.3 35 27-61 350-384 (517)
396 PRK10262 thioredoxin reductase 93.9 0.094 2E-06 50.7 5.3 35 27-61 145-179 (321)
397 TIGR03143 AhpF_homolog putativ 93.9 0.087 1.9E-06 55.1 5.3 37 27-63 142-178 (555)
398 PF01488 Shikimate_DH: Shikima 93.8 0.13 2.8E-06 42.5 5.3 35 26-60 10-45 (135)
399 TIGR01316 gltA glutamate synth 93.8 0.094 2E-06 53.3 5.3 35 27-61 271-305 (449)
400 PRK07531 bifunctional 3-hydrox 93.8 0.09 2E-06 54.0 5.1 32 29-60 5-36 (495)
401 PRK06718 precorrin-2 dehydroge 93.8 0.12 2.5E-06 46.2 5.2 34 27-60 9-42 (202)
402 KOG4405 GDP dissociation inhib 93.7 0.069 1.5E-06 51.2 3.7 49 25-73 5-53 (547)
403 PRK04690 murD UDP-N-acetylmura 93.6 0.094 2E-06 53.5 5.0 34 28-61 8-41 (468)
404 TIGR02354 thiF_fam2 thiamine b 93.6 0.11 2.4E-06 46.1 4.8 34 27-60 20-54 (200)
405 PLN02353 probable UDP-glucose 93.5 0.099 2.1E-06 53.0 4.8 33 28-60 1-35 (473)
406 COG1748 LYS9 Saccharopine dehy 93.5 0.1 2.3E-06 50.8 4.8 33 28-60 1-34 (389)
407 PRK06719 precorrin-2 dehydroge 93.4 0.16 3.4E-06 43.2 5.1 33 27-59 12-44 (157)
408 PRK06223 malate dehydrogenase; 93.3 0.14 3.1E-06 49.1 5.4 34 28-61 2-36 (307)
409 TIGR01292 TRX_reduct thioredox 93.3 0.14 2.9E-06 48.9 5.2 35 27-61 140-174 (300)
410 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.3 0.12 2.5E-06 53.0 4.9 34 28-61 5-38 (503)
411 TIGR00518 alaDH alanine dehydr 93.3 0.15 3.3E-06 50.1 5.6 34 27-60 166-199 (370)
412 PRK12831 putative oxidoreducta 93.2 0.13 2.8E-06 52.5 5.2 35 27-61 280-314 (464)
413 PRK14620 NAD(P)H-dependent gly 93.2 0.13 2.8E-06 49.9 5.0 32 29-60 1-32 (326)
414 PRK15057 UDP-glucose 6-dehydro 93.2 0.12 2.5E-06 51.2 4.6 31 30-61 2-32 (388)
415 PRK12770 putative glutamate sy 93.2 0.13 2.7E-06 50.6 4.9 34 28-61 172-206 (352)
416 PF00056 Ldh_1_N: lactate/mala 93.2 0.19 4.2E-06 41.8 5.3 33 29-61 1-36 (141)
417 PRK07417 arogenate dehydrogena 93.1 0.13 2.9E-06 48.5 4.7 32 30-61 2-33 (279)
418 PTZ00082 L-lactate dehydrogena 93.0 0.19 4E-06 48.4 5.7 37 26-62 4-41 (321)
419 PRK04308 murD UDP-N-acetylmura 93.0 0.16 3.5E-06 51.6 5.6 35 28-62 5-39 (445)
420 PRK01710 murD UDP-N-acetylmura 93.0 0.14 3E-06 52.3 5.1 34 28-61 14-47 (458)
421 PRK08268 3-hydroxy-acyl-CoA de 92.9 0.16 3.5E-06 52.2 5.4 34 28-61 7-40 (507)
422 COG1893 ApbA Ketopantoate redu 92.8 0.14 3.1E-06 48.8 4.6 34 29-62 1-34 (307)
423 cd01075 NAD_bind_Leu_Phe_Val_D 92.7 0.21 4.5E-06 44.4 5.2 34 27-60 27-60 (200)
424 PRK03369 murD UDP-N-acetylmura 92.6 0.17 3.7E-06 52.0 5.1 34 27-60 11-44 (488)
425 cd05191 NAD_bind_amino_acid_DH 92.6 0.29 6.3E-06 36.8 5.1 34 26-59 21-55 (86)
426 cd05293 LDH_1 A subgroup of L- 92.5 0.23 4.9E-06 47.6 5.5 35 27-61 2-38 (312)
427 PRK02472 murD UDP-N-acetylmura 92.5 0.18 3.8E-06 51.4 5.1 34 28-61 5-38 (447)
428 PF00899 ThiF: ThiF family; I 92.5 0.17 3.7E-06 41.8 4.1 33 28-60 2-35 (135)
429 PRK09424 pntA NAD(P) transhydr 92.3 0.22 4.7E-06 50.8 5.2 36 26-61 163-198 (509)
430 TIGR01915 npdG NADPH-dependent 92.1 0.24 5.3E-06 44.8 4.9 32 29-60 1-33 (219)
431 COG1250 FadB 3-hydroxyacyl-CoA 92.0 0.21 4.5E-06 47.2 4.5 34 27-60 2-35 (307)
432 PRK01368 murD UDP-N-acetylmura 91.9 0.21 4.6E-06 50.7 4.7 32 28-60 6-37 (454)
433 PRK08306 dipicolinate synthase 91.8 0.3 6.4E-06 46.5 5.3 35 27-61 151-185 (296)
434 PRK00421 murC UDP-N-acetylmura 91.8 0.23 5.1E-06 50.7 4.9 35 27-61 6-41 (461)
435 PRK00066 ldh L-lactate dehydro 91.8 0.33 7.1E-06 46.6 5.6 36 26-61 4-41 (315)
436 PRK11559 garR tartronate semia 91.8 0.26 5.6E-06 47.0 4.9 34 28-61 2-35 (296)
437 KOG2304 3-hydroxyacyl-CoA dehy 91.8 0.19 4.1E-06 44.2 3.5 37 25-61 8-44 (298)
438 cd05291 HicDH_like L-2-hydroxy 91.7 0.28 6E-06 47.0 5.1 32 30-61 2-35 (306)
439 PRK15461 NADH-dependent gamma- 91.6 0.25 5.4E-06 47.1 4.6 33 29-61 2-34 (296)
440 PRK11730 fadB multifunctional 91.6 0.26 5.6E-06 53.1 5.2 35 27-61 312-346 (715)
441 PRK15116 sulfur acceptor prote 91.6 0.29 6.2E-06 45.5 4.8 34 27-60 29-63 (268)
442 TIGR02437 FadB fatty oxidation 91.6 0.23 5E-06 53.3 4.8 35 27-61 312-346 (714)
443 PRK11749 dihydropyrimidine deh 91.5 0.28 6.2E-06 50.0 5.2 35 27-61 272-307 (457)
444 PRK12549 shikimate 5-dehydroge 91.5 0.31 6.8E-06 46.0 5.1 34 27-60 126-160 (284)
445 PTZ00117 malate dehydrogenase; 91.5 0.34 7.3E-06 46.7 5.4 36 26-61 3-39 (319)
446 COG3634 AhpF Alkyl hydroperoxi 91.5 0.22 4.8E-06 46.9 3.8 37 25-61 351-387 (520)
447 TIGR03378 glycerol3P_GlpB glyc 91.4 0.5 1.1E-05 46.9 6.6 33 29-61 1-33 (419)
448 cd00401 AdoHcyase S-adenosyl-L 91.4 0.32 7E-06 48.2 5.3 35 27-61 201-235 (413)
449 PRK00141 murD UDP-N-acetylmura 91.4 0.29 6.2E-06 50.1 5.0 33 28-60 15-47 (473)
450 PLN02256 arogenate dehydrogena 91.4 0.4 8.7E-06 45.7 5.7 36 26-61 34-69 (304)
451 PF02254 TrkA_N: TrkA-N domain 91.3 0.41 8.8E-06 38.2 5.0 31 31-61 1-31 (116)
452 cd05311 NAD_bind_2_malic_enz N 91.3 0.33 7.1E-06 44.1 4.8 34 27-60 24-60 (226)
453 COG2084 MmsB 3-hydroxyisobutyr 91.3 0.3 6.4E-06 45.7 4.6 34 29-62 1-34 (286)
454 PRK02006 murD UDP-N-acetylmura 91.2 0.29 6.4E-06 50.5 4.9 34 28-61 7-40 (498)
455 PRK00683 murD UDP-N-acetylmura 91.1 0.32 7E-06 48.9 5.0 33 29-61 4-36 (418)
456 TIGR01505 tartro_sem_red 2-hyd 91.1 0.26 5.7E-06 46.8 4.2 32 30-61 1-32 (291)
457 cd01339 LDH-like_MDH L-lactate 91.0 0.28 6.2E-06 46.8 4.3 31 31-61 1-32 (300)
458 PTZ00142 6-phosphogluconate de 90.8 0.31 6.8E-06 49.4 4.6 33 29-61 2-34 (470)
459 COG1252 Ndh NADH dehydrogenase 90.8 0.2 4.3E-06 49.3 3.1 39 254-296 223-262 (405)
460 TIGR02853 spore_dpaA dipicolin 90.8 0.42 9E-06 45.2 5.2 35 27-61 150-184 (287)
461 PRK11199 tyrA bifunctional cho 90.7 0.36 7.9E-06 47.6 4.9 35 26-60 96-131 (374)
462 PRK08644 thiamine biosynthesis 90.7 0.42 9.1E-06 42.9 4.9 34 27-60 27-61 (212)
463 PRK12778 putative bifunctional 90.7 0.33 7.1E-06 52.9 4.9 35 27-61 569-604 (752)
464 TIGR02441 fa_ox_alpha_mit fatt 90.6 0.31 6.7E-06 52.5 4.6 35 27-61 334-368 (737)
465 TIGR00561 pntA NAD(P) transhyd 90.4 0.5 1.1E-05 48.1 5.6 36 26-61 162-197 (511)
466 cd01487 E1_ThiF_like E1_ThiF_l 90.4 0.45 9.8E-06 41.3 4.7 31 30-60 1-32 (174)
467 PRK07688 thiamine/molybdopteri 90.4 0.44 9.5E-06 46.2 5.0 34 27-60 23-57 (339)
468 TIGR00872 gnd_rel 6-phosphoglu 90.3 0.44 9.4E-06 45.5 4.9 32 30-61 2-33 (298)
469 cd05290 LDH_3 A subgroup of L- 90.3 0.43 9.2E-06 45.6 4.8 31 30-60 1-33 (307)
470 TIGR02440 FadJ fatty oxidation 90.3 0.39 8.4E-06 51.6 5.0 35 27-61 303-338 (699)
471 cd01078 NAD_bind_H4MPT_DH NADP 90.2 0.55 1.2E-05 41.6 5.2 34 27-60 27-61 (194)
472 TIGR00507 aroE shikimate 5-deh 90.1 0.51 1.1E-05 44.3 5.2 34 27-60 116-149 (270)
473 PLN02657 3,8-divinyl protochlo 90.1 0.66 1.4E-05 46.2 6.2 41 21-61 53-94 (390)
474 PRK01390 murD UDP-N-acetylmura 90.1 0.4 8.6E-06 49.0 4.7 33 28-60 9-41 (460)
475 PRK11154 fadJ multifunctional 90.0 0.39 8.5E-06 51.7 4.7 35 27-61 308-343 (708)
476 PF00070 Pyr_redox: Pyridine n 89.9 0.51 1.1E-05 34.8 4.0 34 247-280 46-80 (80)
477 PRK12475 thiamine/molybdopteri 89.9 0.49 1.1E-05 45.8 4.9 34 27-60 23-57 (338)
478 cd01065 NAD_bind_Shikimate_DH 89.8 0.64 1.4E-05 39.3 5.2 35 27-61 18-53 (155)
479 cd01337 MDH_glyoxysomal_mitoch 89.8 0.63 1.4E-05 44.4 5.5 32 29-60 1-35 (310)
480 PRK03815 murD UDP-N-acetylmura 89.6 0.43 9.4E-06 47.6 4.4 31 29-60 1-31 (401)
481 TIGR02355 moeB molybdopterin s 89.6 0.58 1.3E-05 42.9 4.9 34 27-60 23-57 (240)
482 TIGR00936 ahcY adenosylhomocys 89.6 0.59 1.3E-05 46.2 5.2 36 26-61 193-228 (406)
483 PRK09599 6-phosphogluconate de 89.5 0.54 1.2E-05 44.9 4.9 32 30-61 2-33 (301)
484 PRK03803 murD UDP-N-acetylmura 89.4 0.56 1.2E-05 47.7 5.2 36 26-61 4-39 (448)
485 TIGR02356 adenyl_thiF thiazole 89.4 0.62 1.3E-05 41.5 4.8 34 27-60 20-54 (202)
486 COG0287 TyrA Prephenate dehydr 89.4 0.69 1.5E-05 43.4 5.3 36 27-62 2-37 (279)
487 PRK14573 bifunctional D-alanyl 89.3 0.47 1E-05 52.1 4.9 35 27-61 3-38 (809)
488 PRK05690 molybdopterin biosynt 89.2 0.67 1.4E-05 42.7 5.0 34 27-60 31-65 (245)
489 cd01483 E1_enzyme_family Super 89.2 0.65 1.4E-05 38.8 4.6 31 30-60 1-32 (143)
490 PLN02712 arogenate dehydrogena 89.1 0.75 1.6E-05 49.0 6.0 35 26-60 50-84 (667)
491 COG2085 Predicted dinucleotide 89.1 0.58 1.3E-05 41.2 4.2 32 28-59 1-32 (211)
492 PRK12779 putative bifunctional 89.0 0.59 1.3E-05 51.9 5.3 35 27-61 446-480 (944)
493 PRK07502 cyclohexadienyl dehyd 88.9 0.71 1.5E-05 44.3 5.2 34 28-61 6-41 (307)
494 PLN02172 flavin-containing mon 88.9 0.52 1.1E-05 48.0 4.5 35 27-61 203-237 (461)
495 PRK03806 murD UDP-N-acetylmura 88.8 0.63 1.4E-05 47.2 5.0 34 28-61 6-39 (438)
496 PRK09496 trkA potassium transp 88.7 0.6 1.3E-05 47.6 4.9 33 29-61 1-33 (453)
497 PRK08328 hypothetical protein; 88.7 0.67 1.5E-05 42.3 4.7 34 27-60 26-60 (231)
498 PRK11880 pyrroline-5-carboxyla 88.6 0.67 1.5E-05 43.4 4.8 33 28-60 2-37 (267)
499 PF03807 F420_oxidored: NADP o 88.6 1 2.2E-05 34.5 5.0 31 30-60 1-35 (96)
500 PF07991 IlvN: Acetohydroxy ac 88.5 1.1 2.5E-05 37.7 5.4 35 27-61 3-37 (165)
No 1
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=3e-57 Score=457.08 Aligned_cols=434 Identities=84% Similarity=1.365 Sum_probs=361.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (507)
.+|+|||||+|||+||+.|.++|++|+|||+++|+|||++|....|+.+|+|++|+++...++.+.++++++|++..+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 47999999999999999999999999999999999999999888899999999999864334568999999999877655
Q ss_pred CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHh
Q 010542 109 GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVF 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (507)
....+.+..+... +..+......++......+...+.++............++.|+.++++.++
T Consensus 81 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 144 (435)
T PLN02268 81 GDNSVLYDHDLES----------------YALFDMDGNQVPQELVTKVGETFERILEETEKVRDEHEEDMSLLQAISIVL 144 (435)
T ss_pred CCccccccccccc----------------cceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHHh
Confidence 4444333322111 233444555667666666666666666665554444567889999988777
Q ss_pred ccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCCccccccchHHHHHHHhccCCcccCceeEEEEe
Q 010542 189 DRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITR 268 (507)
Q Consensus 189 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~ 268 (507)
.+.+.+...++.+++++.++.++.++++.+++++|+..+.....+.|+...+.+|++.++++|.++++|++|++|++|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~ 224 (435)
T PLN02268 145 ERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEELLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVR 224 (435)
T ss_pred hhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEE
Confidence 65544455668888888888887788999999999887665445566677888999999999999999999999999999
Q ss_pred eCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCC
Q 010542 269 HYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDT 348 (507)
Q Consensus 269 ~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~ 348 (507)
.++++.|++.+|+++.||+||+|+|+..+....+.+.|++|+...+++.+++++...|+.+.|+++||++.++.|.+.+.
T Consensus 225 ~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~~~~g~~~~~ 304 (435)
T PLN02268 225 RYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNVEFLGVVAPT 304 (435)
T ss_pred cCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCCceeeccCCC
Confidence 99999999999988999999999999998765678889999999999999999999999999999999987777776654
Q ss_pred CCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCC
Q 010542 349 SYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 428 (507)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~ 428 (507)
...+.++.+.....+..++++++.+..+..+.+++++++++.++++|.++||...+|..+.+++|..+|++.|+|.+..|
T Consensus 305 ~~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~ 384 (435)
T PLN02268 305 SYGCSYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLV 384 (435)
T ss_pred CCCceEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCC
Confidence 44555555554456677888898888888899999999999999999999998778999999999999999999998889
Q ss_pred CCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542 429 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 478 (507)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l 478 (507)
|+.....+.+.+|+++|||||++++..++|+||||++||.+||++|++.|
T Consensus 385 g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 385 GKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 98777888899999999999999999888999999999999999998764
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=2.7e-47 Score=392.86 Aligned_cols=428 Identities=34% Similarity=0.518 Sum_probs=321.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC----CeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF----GFPVDLGASWLHGVCQENPLAPVISRLG 101 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~----g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (507)
....+|+|||||++||+||+.|++.|++|+|+|+++++|||+.|.... ++.+|+|++|+++. ..+.+..+++++|
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~-~~npl~~L~~qlg 260 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGT-LGNPLGIIARQLG 260 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCC-CccHHHHHHHHcC
Confidence 357899999999999999999999999999999999999999998754 57899999999875 4456778899999
Q ss_pred CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHH---hhcCCCCC
Q 010542 102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV---REEHDEDM 178 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 178 (507)
++......... ++..++...+..........+..++....++ ......+.
T Consensus 261 l~l~~~~~~~~---------------------------ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D~ 313 (881)
T PLN03000 261 SSLYKVRDKCP---------------------------LYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMDV 313 (881)
T ss_pred CceeecCCCCe---------------------------EEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcCC
Confidence 98654432222 2222333444433323222333333332222 22334567
Q ss_pred cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhccCC
Q 010542 179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD 256 (507)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~ 256 (507)
++.+++..+..... .........++.+.+..+....+.....+++..+... ....+.+..+.+|++.|+++|++.+.
T Consensus 314 SLg~aLe~~~~~~g-~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~ 392 (881)
T PLN03000 314 SLGAALETFRQVSG-NDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVP 392 (881)
T ss_pred cHHHHHHHHHHHHc-ccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCC
Confidence 77765543221100 0000011123333333333444455555565444321 12344566788999999999999999
Q ss_pred cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCC
Q 010542 257 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336 (507)
Q Consensus 257 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (507)
|++|++|++|...+++|.|++.+ .++.||+||+|+|+..+....+.|.|+||+...+++.+++++...|+++.|+++||
T Consensus 393 I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW 471 (881)
T PLN03000 393 ILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW 471 (881)
T ss_pred cccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 99999999999999999998754 48999999999999998866789999999999999999999999999999999999
Q ss_pred CCC-ccceeecCCCC---ceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEE
Q 010542 337 PNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQY 408 (507)
Q Consensus 337 ~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~----~~~~~~~ 408 (507)
+.. +++|.+..... ....+.+..+..+..+|++++.+..+..+..++++++++.++++|.++|+. +.+|..+
T Consensus 472 ~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ 551 (881)
T PLN03000 472 STDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQT 551 (881)
T ss_pred cCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEE
Confidence 854 56677643221 122334444445677899999999999999999999999999999999962 3578899
Q ss_pred EeccCCCCCCCCcccccCCCCCchHHHHHhcCCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 010542 409 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYG 483 (507)
Q Consensus 409 ~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~~~ 483 (507)
.+++|..+||+.|+|++..+|.....++.+.+|+ ++|||||++++..|+|||+||++||.+||++|++.+.....
T Consensus 552 ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~ 628 (881)
T PLN03000 552 VCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGI 628 (881)
T ss_pred EEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999989998888888899986 58999999999888899999999999999999998866653
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=4e-47 Score=391.35 Aligned_cols=426 Identities=36% Similarity=0.554 Sum_probs=319.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC--C--eeeecCCceeeCCCCCCchHHHHHhcC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--G--FPVDLGASWLHGVCQENPLAPVISRLG 101 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--g--~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (507)
...+||+|||||++||+||..|+++|++|+|+|+++++||+++|.... | +.+|+|+.|+++. ..+++..+.+++|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~-~~npl~~la~~lg 236 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGI-HANPLGVLARQLS 236 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecccc-ccchHHHHHHHhC
Confidence 457899999999999999999999999999999999999999998764 3 4899999999875 3445888999999
Q ss_pred CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh---hcCCCCC
Q 010542 102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR---EEHDEDM 178 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 178 (507)
++..+..... .++..++...+......+...+..++..+..+. ....+++
T Consensus 237 l~~~~~~~~~---------------------------~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~ 289 (738)
T PLN02529 237 IPLHKVRDNC---------------------------PLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDI 289 (738)
T ss_pred CCccccCCCc---------------------------eEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCC
Confidence 9865432221 222333333333322222222333333322211 1245688
Q ss_pred cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhccCC
Q 010542 179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKGLD 256 (507)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g~~ 256 (507)
|+.+++......... .......+++++++..+....+.+.+.+++..+... ....+.+..+.+||+.++++|++++.
T Consensus 290 Sl~~~le~~~~~~~~-~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~~L~ 368 (738)
T PLN02529 290 SLGSVLERLRQLYGV-ARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCEGVP 368 (738)
T ss_pred CHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHhcCC
Confidence 999988754321100 011122345555554455556667777777666532 22344567789999999999999999
Q ss_pred cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCC
Q 010542 257 IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 336 (507)
Q Consensus 257 i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (507)
|++|++|++|...+++|+|++ ++.++.||+||+|+|+..+....+.|.|+||+...+++.+++++...|+++.|+++||
T Consensus 369 IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 369 IFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW 447 (738)
T ss_pred EEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence 999999999999999999876 4458999999999999999876688999999999999999999999999999999999
Q ss_pred CCC-ccceeecCCC---CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCcEE
Q 010542 337 PNV-EFLGVVSDTS---YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPIQY 408 (507)
Q Consensus 337 ~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~----~~~~~~~ 408 (507)
+.. +++|.+.... .....+.+.....+..++++++.+..+..+..++++++++.++++|+++|+. +.+|..+
T Consensus 448 ~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~ 527 (738)
T PLN02529 448 GEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQT 527 (738)
T ss_pred cCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEE
Confidence 753 4566653221 1112222333334556888999998888899999999999999999999962 3467889
Q ss_pred EeccCCCCCCCCcccccCCCCCchHHHHHhcCCC-CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 010542 409 LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 481 (507)
Q Consensus 409 ~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~ 481 (507)
..++|..++++.|+|++..++......+.+..|+ ++|||||++++..|+|+||||+.||.+||++|++.+...
T Consensus 528 v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~~ 601 (738)
T PLN02529 528 ICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARSQ 601 (738)
T ss_pred EEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999887776655556677774 899999999999899999999999999999999877543
No 4
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=3.3e-46 Score=385.79 Aligned_cols=429 Identities=34% Similarity=0.524 Sum_probs=319.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCC----eeeecCCceeeCCCCCCchHHHHHhcC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFG----FPVDLGASWLHGVCQENPLAPVISRLG 101 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g----~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (507)
.+..+|+|||||++||+||+.|++.|++|+|+|+++++|||+.+....| +.+|+|++++++. ..+.+..+++++|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~-~~npl~~l~~~lg 314 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGI-NGNPLGVLARQLG 314 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCC-CccHHHHHHHHcC
Confidence 4578999999999999999999999999999999999999999987764 3689999999875 3456788999999
Q ss_pred CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh-----cCCC
Q 010542 102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE-----EHDE 176 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 176 (507)
++......... ++..++..+...........+..++....++.. ....
T Consensus 315 l~~~~~~~~~~---------------------------~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~ 367 (808)
T PLN02328 315 LPLHKVRDICP---------------------------LYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSV 367 (808)
T ss_pred CceEecCCCce---------------------------EEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 98654332221 222233333322222222333444443332221 1234
Q ss_pred CCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcc--ccccCCccccccchHHHHHHHhcc
Q 010542 177 DMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKE--ELLPGGHGLMVRGYLPVINTLAKG 254 (507)
Q Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~g 254 (507)
+.|+.++++.+..... .........++++.+..+....+.....+++..+... ....+.+..+.+||+.|+++|++.
T Consensus 368 D~SLg~~le~~~~~~~-~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~ 446 (808)
T PLN02328 368 DVNLGTALEAFRHVYK-VAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKD 446 (808)
T ss_pred CcCHHHHHHHHhhhhc-cCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhh
Confidence 6788888764321100 0001112233444443334444555556665444321 122345667899999999999999
Q ss_pred CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCC
Q 010542 255 LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV 334 (507)
Q Consensus 255 ~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 334 (507)
+.|++|++|++|...+++|.| +.+|+++.||+||+|+|+..+....+.|.|+||+...+++.+++|+...|+++.|+.+
T Consensus 447 L~I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~ 525 (808)
T PLN02328 447 LPIFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYN 525 (808)
T ss_pred CCcccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCc
Confidence 999999999999999888877 4577799999999999999987666789999999999999999999999999999999
Q ss_pred CCCCC-ccceeecCCCC---ceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC----CCCCc
Q 010542 335 FWPNV-EFLGVVSDTSY---GCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD----ASSPI 406 (507)
Q Consensus 335 ~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~----~~~~~ 406 (507)
||+.. +.+|.+..+.. ....+.+.....+..+|++++.+..+..+..++++++++.++++|.++|+. ..+|.
T Consensus 526 FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~ 605 (808)
T PLN02328 526 FWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPV 605 (808)
T ss_pred cccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcc
Confidence 99853 45566543211 112333443345668899999999999999999999999999999999862 35788
Q ss_pred EEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHHHhCC
Q 010542 407 QYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGE 484 (507)
Q Consensus 407 ~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~~~~~ 484 (507)
.+.+++|..+++++|+|++..+|......+.+.+|+ ++|||||++++..++|||+||+.||.+||++|++.+..+...
T Consensus 606 ~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~ 685 (808)
T PLN02328 606 QAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLC 685 (808)
T ss_pred eEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999888998767778888885 589999999998888999999999999999999988777543
No 5
>PLN02676 polyamine oxidase
Probab=100.00 E-value=3.9e-45 Score=368.63 Aligned_cols=423 Identities=29% Similarity=0.467 Sum_probs=302.8
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCceeEeccCCCeeeecCCceeeCC--CCCCchHHHHHhcC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGV--CQENPLAPVISRLG 101 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~l~~~lg 101 (507)
....+||+|||||++||+||++|+++|. +|+|+|+++++||++.+....|+.+|.|++|+++. ...+.+.++++++|
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 3457899999999999999999999998 69999999999999999888899999999999752 34567889999999
Q ss_pred CCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh----hcCCCC
Q 010542 102 LPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR----EEHDED 177 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 177 (507)
+.......... . ...+..++...+..........+..+......+. ....++
T Consensus 103 ~~~~~~~~~~~-----~-------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (487)
T PLN02676 103 LRTFYSDFDNL-----S-------------------SNIYKQDGGLYPKKVVQKSMKVADASDEFGENLSISLSAKKAVD 158 (487)
T ss_pred CceeecCcccc-----c-------------------eeEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 98654321110 0 1112222233333322232333333333222221 122345
Q ss_pred CcHHH--HHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCcccc---ccCCcccc--ccchHHHHHH
Q 010542 178 MSIQR--AISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL---LPGGHGLM--VRGYLPVINT 250 (507)
Q Consensus 178 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~~~~~--~~G~~~l~~~ 250 (507)
.++.+ .+..... ....+....++.. ...++.++...|+..+..... ..+...++ ++|++++++.
T Consensus 159 ~s~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~ 229 (487)
T PLN02676 159 ISILTAQRLFGQVP--------KTPLEMVIDYYNY-DYEFAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYY 229 (487)
T ss_pred ccHHHHHHHHhhCC--------CCHHHHHHHHHhc-cceeccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHH
Confidence 55532 2221110 0111111111111 122566777777765432111 11223333 5799999999
Q ss_pred Hhcc-----------CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHc
Q 010542 251 LAKG-----------LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319 (507)
Q Consensus 251 l~~g-----------~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~ 319 (507)
|.+. .+|++|++|++|...+++|.|++.+|+++.||+||+|+|+..+....+.|.|+||+..++++..+
T Consensus 230 La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l 309 (487)
T PLN02676 230 LAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQF 309 (487)
T ss_pred HHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhC
Confidence 9873 35999999999999999999999999899999999999999987656899999999999999999
Q ss_pred CCcceeEEEEEccCCCCCCCc-cceeecCCCC--ceeeeeccc-cCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHH
Q 010542 320 GVGIENKIIMHFDKVFWPNVE-FLGVVSDTSY--GCSYFLNLH-KATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQL 395 (507)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L 395 (507)
+++...|+++.|+++||++.. .......... ....+.... ..++..+++++..+..+..+..+++++.++.++++|
T Consensus 310 ~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L 389 (487)
T PLN02676 310 DMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVL 389 (487)
T ss_pred CceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998631 1111111100 000111111 123445777777787788888999999999999999
Q ss_pred HHhCC-CCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542 396 KKILP-DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 474 (507)
Q Consensus 396 ~~~~p-~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i 474 (507)
+++|| ....|..+..+.|..+|++.|+|++..||......+.+++|+++|||||++++..++||||||+.||.+||++|
T Consensus 390 ~~~~g~~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I 469 (487)
T PLN02676 390 RKMFGPNIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDL 469 (487)
T ss_pred HHHhCCCCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHHHHHHHHHHHH
Confidence 99996 45678899999999999999999988899887778889999999999999999888899999999999999999
Q ss_pred HHHHHH
Q 010542 475 RMRVLE 480 (507)
Q Consensus 475 ~~~l~~ 480 (507)
++.+..
T Consensus 470 ~~~l~~ 475 (487)
T PLN02676 470 LECIKK 475 (487)
T ss_pred HHHhcc
Confidence 987643
No 6
>PLN02976 amine oxidase
Probab=100.00 E-value=5e-45 Score=384.23 Aligned_cols=428 Identities=37% Similarity=0.643 Sum_probs=322.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCC-------CchHHHHH
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQE-------NPLAPVIS 98 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~-------~~~~~l~~ 98 (507)
..++|+|||||++||++|++|.+.|++|+|||+++++||++.+... .|+++|.|+.++++...+ +....+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4689999999999999999999999999999999999999999764 588999999999875321 23345788
Q ss_pred hcCCCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhh---cCC
Q 010542 99 RLGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVRE---EHD 175 (507)
Q Consensus 99 ~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 175 (507)
++|+.......... .+....+..++.+....+...+..++........ ...
T Consensus 772 qlGl~l~~~~~~~~--------------------------~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a 825 (1713)
T PLN02976 772 QLGLELTVLNSDCP--------------------------LYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVAQKGEHA 825 (1713)
T ss_pred hcCCccccccCCCc--------------------------eeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 89987544322111 0122345566666666666666666655543211 233
Q ss_pred CCCcHHHHHHHHhccCh------h-------------H----------------H---hhhhHHHHHHHHHHhhhccccC
Q 010542 176 EDMSIQRAISIVFDRRP------E-------------L----------------R---LEGLAHKVLQWYLCRMEGWFAA 217 (507)
Q Consensus 176 ~~~~~~~~~~~~~~~~~------~-------------l----------------~---~~~~~~~~~~~~~~~~~~~~~~ 217 (507)
.++++.+++...+.... . . . .......++++++......++.
T Consensus 826 ~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa 905 (1713)
T PLN02976 826 MKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAA 905 (1713)
T ss_pred cCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccC
Confidence 46788887774332110 0 0 0 0001111222222222223456
Q ss_pred CcccccccccCccc---cccCCccccccchHHHHHHHhccCCcccCceeEEEEee----------CCcEEEEEcCCcEEE
Q 010542 218 DAETISLKSWDKEE---LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRH----------YIGVKVTVEGGKTFV 284 (507)
Q Consensus 218 ~~~~~s~~~~~~~~---~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~~~----------~~~v~v~~~~g~~~~ 284 (507)
++.++|+..+.... .+.|....+.+||+.|+++|++++.|++|++|++|.+. +++|.|++.+|+++.
T Consensus 906 ~L~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetft 985 (1713)
T PLN02976 906 LLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFL 985 (1713)
T ss_pred CHHHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEE
Confidence 77788876655221 23455667899999999999999999999999999984 467899999998999
Q ss_pred cCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceeecCC---CCceeeeecccc
Q 010542 285 ADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDT---SYGCSYFLNLHK 360 (507)
Q Consensus 285 ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~---~~~~~~~~~~~~ 360 (507)
||+||+|+|+..+....+.|.|+||+..++++..++++...|+++.|+.+||++. .++|..... ...+..+++...
T Consensus 986 ADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ 1065 (1713)
T PLN02976 986 GDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKK 1065 (1713)
T ss_pred eceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCC
Confidence 9999999999998755578999999999999999999999999999999999863 555644321 111223334444
Q ss_pred CCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCC--CCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHh
Q 010542 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPD--ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL 438 (507)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~--~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~ 438 (507)
+.+..+|++++.+..+..+..++++++++.+++.|.++||. .+.|..+.+++|..+||+.|+|++..||.....+..+
T Consensus 1066 psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~L 1145 (1713)
T PLN02976 1066 TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDIL 1145 (1713)
T ss_pred CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHH
Confidence 55677888888888888888999999999999999999985 3578899999999999999999988899877778889
Q ss_pred cCCCCc-eEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 010542 439 RIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480 (507)
Q Consensus 439 ~~~~~~-l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~ 480 (507)
..|++| |||||++++..|+|||+||+.||.+||++|+..+..
T Consensus 1146 AePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976 1146 GRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred hCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence 999876 999999999989999999999999999999987654
No 7
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.9e-46 Score=367.99 Aligned_cols=432 Identities=46% Similarity=0.700 Sum_probs=328.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCee-eecCCceeeCCCCCCchHHHHHhcCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLP 103 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (507)
..++++|||||||+|||+||..|.+.|++|+|||+++|+|||++|.+..+.. +|+|++++++.. .+++.-+.+++|++
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~-~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVY-NNPLALLSKQLGLE 90 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcC-ccHHHHHHHHhCcc
Confidence 4678899999999999999999999999999999999999999999887665 999999999864 44788999999999
Q ss_pred eeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCcHH
Q 010542 104 LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREE--HDEDMSIQ 181 (507)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 181 (507)
..........+...+... ...+..........+ +............. .....++.
T Consensus 91 ~~~~~~~~~l~~~~~~~~----------------~~~~d~~~~~~~~~l-------~~~~~~~~~~~~~~~~~i~~~~~~ 147 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGES----------------DKVFDDFVEQEFNRL-------LDDASNLEQRLDNEIIGISDDSFG 147 (501)
T ss_pred cceecccccccccCCccc----------------ccccccchhhhhHHH-------HHHHhhhhhhhhhcccccccccHH
Confidence 877666665554444222 111111111111111 11111111111000 01122333
Q ss_pred HHHHHHhc------cChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccC--CccccccchHHHHHHHhc
Q 010542 182 RAISIVFD------RRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAK 253 (507)
Q Consensus 182 ~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~ 253 (507)
+.+..+.. ...+....+.....+.+++..+.........+.+...+.....+.+ .+..+.+|+..++..+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~ 227 (501)
T KOG0029|consen 148 EALEAFLSASRLMKTLLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAE 227 (501)
T ss_pred HHHHhHHHHHHHHHhhHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCC
Confidence 33222211 1111222234444555666656666666666666665554433333 357889999999999999
Q ss_pred cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEcc
Q 010542 254 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFD 332 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~ 332 (507)
|+.|+++..|.+|...++. +.+++.++..+.+|+||+|+|+..+....+.|.|+||...++++.++..+...|+.+.|+
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~ 307 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFP 307 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEec
Confidence 9999999999999998776 455656666699999999999999987778999999999999999999999999999999
Q ss_pred CCCC-CCCccceeecCCCCcee--eeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCC--CCCCCcE
Q 010542 333 KVFW-PNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP--DASSPIQ 407 (507)
Q Consensus 333 ~~~~-~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p--~~~~~~~ 407 (507)
..|| ++.+++|.......... .+++..+..+..+++++..+..+..+..++++++++.+...|+++|+ ...+|.+
T Consensus 308 ~~fW~~~~d~fg~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~ 387 (501)
T KOG0029|consen 308 RVFWDQDIDFFGIVPETSVLRGLFTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLD 387 (501)
T ss_pred cccCCCCcCeEEEccccccccchhhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccc
Confidence 9999 56678887766544444 45666666666688888888878889999999999999999999999 6788999
Q ss_pred EEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCc-eEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 010542 408 YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLE 480 (507)
Q Consensus 408 ~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~~ 480 (507)
+.+.+|..+++..|.|++..++...+.++.+..|+.+ +||||++++..++|+|+||+.||.++|..|+..+..
T Consensus 388 ~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 388 ALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred eeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999988888887888999999988 999999999999999999999999999999998874
No 8
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.5e-44 Score=364.73 Aligned_cols=433 Identities=31% Similarity=0.449 Sum_probs=306.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCC-----CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHh
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDAS-----FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISR 99 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G-----~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~ 99 (507)
+.+..||+|||||++||+||++|++.| ++|+|||+++++|||++|....|+.+|.|++++++.. .+.+.+++++
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~-~~~~~~l~~~ 80 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIG-GSPVYKIAQE 80 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCC-CCHHHHHHHH
Confidence 345689999999999999999999887 8999999999999999999888999999999998763 6688999999
Q ss_pred cCCCeeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHh--------
Q 010542 100 LGLPLYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVR-------- 171 (507)
Q Consensus 100 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 171 (507)
+|+......... .. .. .....++...+..++......+.+.+..++.......
T Consensus 81 ~g~~~~~~~~~~---~~-~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (539)
T PLN02568 81 AGSLESDEPWEC---MD-GF---------------PDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDE 141 (539)
T ss_pred hCCccccCccee---cc-cc---------------cccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 999532210000 00 00 0002344455556666665555555555554433110
Q ss_pred -------------hcCCCCCcHHHHHHHHhccC------hhHHh--hhhHHHHH-HHHHHhhhcc--ccCCccc---ccc
Q 010542 172 -------------EEHDEDMSIQRAISIVFDRR------PELRL--EGLAHKVL-QWYLCRMEGW--FAADAET---ISL 224 (507)
Q Consensus 172 -------------~~~~~~~~~~~~~~~~~~~~------~~l~~--~~~~~~~~-~~~~~~~~~~--~~~~~~~---~s~ 224 (507)
.....+.++.++++..+... +.+.. .+-.+..+ +..+..+..+ ....... +++
T Consensus 142 ~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~ 221 (539)
T PLN02568 142 VDFVKLAAKAARVCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDL 221 (539)
T ss_pred ccccccchhccchhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccc
Confidence 00112347778777543210 00000 00011111 1111111111 1122222 222
Q ss_pred cccCccccccCCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCc
Q 010542 225 KSWDKEELLPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKART 301 (507)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~ 301 (507)
..........|....+.+|++.|+++|.+.+ +|++|++|++|...++++.|++.+|+++.||+||+|+|+..+....
T Consensus 222 ~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~ 301 (539)
T PLN02568 222 AAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGI 301 (539)
T ss_pred cccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhcc
Confidence 2222222234556788999999999999877 4999999999999999999999999899999999999999987532
Q ss_pred ----ccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC------ccceeecCCCC------ceeeee----cc-cc
Q 010542 302 ----IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV------EFLGVVSDTSY------GCSYFL----NL-HK 360 (507)
Q Consensus 302 ----~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~g~~~~~~~------~~~~~~----~~-~~ 360 (507)
+.|.|+||+..++++..++++.++|+++.|+++||... .....+..... ...++. +. ..
T Consensus 302 ~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (539)
T PLN02568 302 GEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI 381 (539)
T ss_pred ccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhcccccccc
Confidence 46899999999999999999999999999999998632 11122211100 000111 01 11
Q ss_pred CCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCC-----------------------CCCcEEEeccCCCCC
Q 010542 361 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA-----------------------SSPIQYLVSHWGTDA 417 (507)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~-----------------------~~~~~~~~~~w~~~~ 417 (507)
..+..+|++++.+..+..+..++++++++.+++.|.++|+.. ..|..+..++|..+|
T Consensus 382 ~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp 461 (539)
T PLN02568 382 HKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDP 461 (539)
T ss_pred CCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCC
Confidence 235678999999999999999999999999999999999632 247888899999999
Q ss_pred CCCcccccCCCCCchHHHHHhcCCCC-------------ceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542 418 NSLGSYSYDTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477 (507)
Q Consensus 418 ~~~g~~~~~~~~~~~~~~~~~~~~~~-------------~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~ 477 (507)
++.|+|++..+|......+.+.+|++ +|||||++++..|+|+|+||+.||.++|++|+..
T Consensus 462 ~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~ 534 (539)
T PLN02568 462 LFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQH 534 (539)
T ss_pred ccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 99999998889988777788888875 6999999999999999999999999999998874
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.1e-41 Score=318.42 Aligned_cols=426 Identities=30% Similarity=0.421 Sum_probs=312.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcC-CCe
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPL 104 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~ 104 (507)
...+|+|||||+|||+||-+|.+.|+ +|+|+|+.+|+|||++|....+-.+|+||+|++| ..++.+.++.+++| ++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG-~~gNpVY~la~~~g~~~~ 98 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHG-EEGNPVYELAKEYGDLKL 98 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecC-CCCChHHHHHHHhCccce
Confidence 45689999999999999999998875 8999999999999999998887799999999998 36778999999998 332
Q ss_pred eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHH
Q 010542 105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAI 184 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (507)
......... ...-...++..++..+...+.+....+....+.... .....|+.+++
T Consensus 99 ~~~tg~~~~-----------------------~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~SvG~~l 154 (498)
T KOG0685|consen 99 LEVTGPAYV-----------------------DNFHTRSNGEVVPEELLDELNEITVTLSDKLREAEI-AHDEGSVGEYL 154 (498)
T ss_pred eccCCcccc-----------------------ceeEEEecCccCcHHHHHHHHHHHHhhhhhcccccc-cCccccHHHHH
Confidence 221111110 022234456677777666655554433333322111 13455777766
Q ss_pred HHHhccC---hh--HHhhhhHHHHHHHHHHhhhcccc-CCcccccccccCccccccC--CccccccchHHHHHHHhccC-
Q 010542 185 SIVFDRR---PE--LRLEGLAHKVLQWYLCRMEGWFA-ADAETISLKSWDKEELLPG--GHGLMVRGYLPVINTLAKGL- 255 (507)
Q Consensus 185 ~~~~~~~---~~--l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~--~~~~~~~G~~~l~~~l~~g~- 255 (507)
...+... +. .....+..++++.|+...+...+ .+.+++|+..+..+....| .......|+..+++.|.+.+
T Consensus 155 n~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p 234 (498)
T KOG0685|consen 155 NSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTECPGEELLIWNKKGYKRILKLLMAVIP 234 (498)
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeecCchhhheechhHHHHHHHHHhccCC
Confidence 6422211 00 11334555666666666655444 4778888888887777777 66677889999999987622
Q ss_pred ----------CcccCceeEEEEeeC-CcEEEEEcCCcEEEcCEEEEecCchhhccCc-ccccCCCcHHHHHHHHHcCCcc
Q 010542 256 ----------DIRLGHRVTKITRHY-IGVKVTVEGGKTFVADAVVVAVPLGVLKART-IKFEPRLPDWKEAAIDDLGVGI 323 (507)
Q Consensus 256 ----------~i~~~~~V~~I~~~~-~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~-~~~~p~l~~~~~~~~~~~~~~~ 323 (507)
+++++++|.+|..++ +.+.|++.||+.+.||+||+|+++..+...- .-|.|+||...+++|+++.++.
T Consensus 235 ~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGt 314 (498)
T KOG0685|consen 235 AQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGT 314 (498)
T ss_pred CcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCc
Confidence 466669999999875 6789999999999999999999998876522 2478999999999999999999
Q ss_pred eeEEEEEccCCCCCCC-ccce-eecCCC-------------CceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHH
Q 010542 324 ENKIIMHFDKVFWPNV-EFLG-VVSDTS-------------YGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAA 388 (507)
Q Consensus 324 ~~~~~l~~~~~~~~~~-~~~g-~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~ 388 (507)
++|+++.|++||||.. ..+- +..+.. ..+.+.... .-..+|.+++.+..+..+.++++|+++
T Consensus 315 v~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~---~~~~vL~gWiaG~~~~~me~lsdEev~ 391 (498)
T KOG0685|consen 315 VNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVS---WAPNVLLGWIAGREARHMETLSDEEVL 391 (498)
T ss_pred cceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcC---cchhhhheeccCCcceehhhCCHHHHH
Confidence 9999999999999963 1111 111111 111111111 123688899999999999999999999
Q ss_pred HHHHHHHHHhCC--CCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhc--------CCCCceEEeeccccCcCCc
Q 010542 389 NFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR--------IPVDNLFFAGEATSMSYPG 458 (507)
Q Consensus 389 ~~~~~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~l~~aG~~~~~~~~g 458 (507)
+.+...|.++++ +++.|..+....|..++++.|.|++..++.....-..+. ++-+.|.|||++++..++.
T Consensus 392 e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~Ys 471 (498)
T KOG0685|consen 392 EGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYS 471 (498)
T ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEcccccccccee
Confidence 999999999985 577788888899999999999999887765432222222 2336899999999998889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 010542 459 SVHGAFSTGLMAAEDCRMRVLE 480 (507)
Q Consensus 459 ~~egA~~SG~~aA~~i~~~l~~ 480 (507)
++.||++||.+.|+++++.-..
T Consensus 472 TthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 472 TTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred hhhhhHHhhHHHHHHHHHHHHh
Confidence 9999999999999998884433
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-42 Score=323.56 Aligned_cols=416 Identities=25% Similarity=0.361 Sum_probs=285.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (507)
.+..||||||||++||+||+.|.++|++|+|+|+++++|||+.+.+..|.+.|.|++++.+ .++.+..+++++|++..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv~~~ 82 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGVPLE 82 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCCCCC
Confidence 6789999999999999999999999999999999999999999988888899999998874 56678899999999876
Q ss_pred eecCCCc--ccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHH--HHHHHHHHHHHHHHHhhc--CCCCCc
Q 010542 106 RTSGDNS--VLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK--VGEAFESILKETDKVREE--HDEDMS 179 (507)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~ 179 (507)
+...+.. ..+...... . ........... ....+..........+.. ..+..-
T Consensus 83 ~fi~~g~~~~~~~~~~~~------------------~----p~~~~~~~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~ 140 (450)
T COG1231 83 PFIRDGDNVIGYVGSSKS------------------T----PKRSLTAAADVRGLVAELEAKARSAGELDPGLTPEDREL 140 (450)
T ss_pred ceeccCcccccccccccc------------------c----chhccchhhhhcchhhhhhhhhhcccccCcccCcchhhh
Confidence 5443221 111111000 0 00000000000 000000000000000000 000000
Q ss_pred HHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhcc-cc-CCccccccc-cc---------Cccc--cccCCccccccchH
Q 010542 180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGW-FA-ADAETISLK-SW---------DKEE--LLPGGHGLMVRGYL 245 (507)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~s~~-~~---------~~~~--~~~~~~~~~~~G~~ 245 (507)
..+.+..+.. ....+++.. +.... ++ .+....+.. .. .... ..........|||+
T Consensus 141 ~~~~~~~W~~----~~~~~~~~~-------~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd 209 (450)
T COG1231 141 DLESLAAWKT----SSLRGLSRD-------PGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMD 209 (450)
T ss_pred hhHHHHhhhh----ccccccccC-------ccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHH
Confidence 0111111100 000001000 00000 00 111111100 00 0000 00011122349999
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcc
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGI 323 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~ 323 (507)
.+.+++.+ |-.|+++.+|.+|.+.+++|+|++.+..++.+|.||+|+|+..+. .+.|.|.+|+...+++..++|.+
T Consensus 210 ~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--qI~f~P~l~~~~~~a~~~~~y~~ 287 (450)
T COG1231 210 QLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILG--QIDFAPLLPAEYKQAAKGVPYGS 287 (450)
T ss_pred HHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHh--hcccCCCCCHHHHHHhcCcCcch
Confidence 99999987 558999999999999999999999984599999999999999987 56889999999999999999999
Q ss_pred eeEEEEEccCCCCCCCc-cceeecCCC-CceeeeeccccCCCceEEEE-EeccchhHHHhcCCHHHHHHHHHHHHHHhCC
Q 010542 324 ENKIIMHFDKVFWPNVE-FLGVVSDTS-YGCSYFLNLHKATGHCVLVY-MPAGQLARDIEKMSDEAAANFAFTQLKKILP 400 (507)
Q Consensus 324 ~~~~~l~~~~~~~~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p 400 (507)
.+|..+.|+++||++.+ ..|....+. .....+++....+|..++.. |..+..+..|..+++++..+.++.++.++||
T Consensus 288 ~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g 367 (450)
T COG1231 288 ATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFG 367 (450)
T ss_pred heeeeeecCchhhhhcccCCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCC
Confidence 99999999999999887 555543332 22333333333467777766 6668888889999999999999999999999
Q ss_pred -CCCCCcEE-EeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542 401 -DASSPIQY-LVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRV 478 (507)
Q Consensus 401 -~~~~~~~~-~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l 478 (507)
...++.++ ...+|..++++.|++....+++..++.+.+..|.++|||||...++.++||+|||+.||.+||.+|...+
T Consensus 368 ~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l 447 (450)
T COG1231 368 DEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALL 447 (450)
T ss_pred hhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhh
Confidence 56666666 7899999999999888888999999999999999999999955555677999999999999999987755
No 11
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=2.4e-39 Score=329.91 Aligned_cols=405 Identities=20% Similarity=0.275 Sum_probs=280.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (507)
++||+|||||++||+||++|+++ |++|+|+|+++++||+++|....|+.+|.|+|++++ .+..+.++++++|+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~--~~~~~~~l~~~lgl~ 79 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLE--RKKSAPDLVKDLGLE 79 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCcccccc--CChHHHHHHHHcCCC
Confidence 47999999999999999999999 999999999999999999998899999999999985 345689999999987
Q ss_pred eeeec--CCCcccccc-cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH
Q 010542 104 LYRTS--GDNSVLYDH-DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180 (507)
Q Consensus 104 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (507)
..... ....+++.+ +...+ ++..+. .........+. .... ....... ......+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~-~p~~~~---------~~~~~~~~~~~----~~~~----~~~~~~~--~~~~~~d~s~ 139 (462)
T TIGR00562 80 HVLVSDATGQRYVLVNRGKLMP-VPTKIA---------PFVKTGLFSLG----GKLR----AGMDFIR--PASPGKDESV 139 (462)
T ss_pred cccccCCCCceEEEECCCceec-CCCChH---------HHhcCCCCCch----hhHH----hhhhhcc--CCCCCCCcCH
Confidence 43221 122222211 11000 000000 00000000000 1111 0111100 0112346899
Q ss_pred HHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc---------------------------c
Q 010542 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---------------------------L 232 (507)
Q Consensus 181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---------------------------~ 232 (507)
.+|++. .+++++.+.++.++ .+.++.+++++|+....... .
T Consensus 140 ~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 208 (462)
T TIGR00562 140 EEFVRR-----------RFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQL 208 (462)
T ss_pred HHHHHH-----------hcCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccc
Confidence 998873 35667777777776 56788888877766422000 0
Q ss_pred c---cCC-ccccccchHHHHHHHhcc---CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCccccc
Q 010542 233 L---PGG-HGLMVRGYLPVINTLAKG---LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE 305 (507)
Q Consensus 233 ~---~~~-~~~~~~G~~~l~~~l~~g---~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~ 305 (507)
+ .+. ...+.+|++.++++|++. .+|++|++|++|..++++|+|++.+|+++.||+||+|+|++.+..+ .
T Consensus 209 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~l----l 284 (462)
T TIGR00562 209 TAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGL----L 284 (462)
T ss_pred cccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHHH----h
Confidence 0 011 345889999999999763 4799999999999999999999888888999999999999987654 3
Q ss_pred CCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-ccceeecCCCC----ceeeeec----cccCCCceEEEEEeccchh
Q 010542 306 PRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTSY----GCSYFLN----LHKATGHCVLVYMPAGQLA 376 (507)
Q Consensus 306 p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~----~~~~~~~----~~~~~~~~~l~~~~~~~~~ 376 (507)
|++++...+.+.+++|.++.++.+.|++++|+.. ...|++.+... ....+.+ ...+.+..++++++.+...
T Consensus 285 ~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~ 364 (462)
T TIGR00562 285 SELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATD 364 (462)
T ss_pred cccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCC
Confidence 5577788889999999999999999998877632 23455544321 1122221 1234566778888877767
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeecccc
Q 010542 377 RDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATS 453 (507)
Q Consensus 377 ~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~~~ 453 (507)
..+.+++++++++.++++|.++++...+|..+.+++|.. +.+.| .+++. ....+.+..+.+||++||+++.
T Consensus 365 ~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~---a~P~~---~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~ 438 (462)
T TIGR00562 365 ESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHR---AIPQY---HVGHDQRLKEARELLESAYPGVFLTGNSFE 438 (462)
T ss_pred ccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccc---cCCCC---CCChHHHHHHHHHHHHhhCCCEEEeccccC
Confidence 778889999999999999999997544578888999964 22222 34442 2222334455689999999976
Q ss_pred CcCCchhhHHHHHHHHHHHHHHHHH
Q 010542 454 MSYPGSVHGAFSTGLMAAEDCRMRV 478 (507)
Q Consensus 454 ~~~~g~~egA~~SG~~aA~~i~~~l 478 (507)
. .++++|+.||.++|+++++.+
T Consensus 439 g---~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 439 G---VGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred C---CcHHHHHHHHHHHHHHHHHhh
Confidence 4 699999999999999998765
No 12
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1e-38 Score=324.64 Aligned_cols=405 Identities=15% Similarity=0.212 Sum_probs=270.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (507)
+++|+|||||+|||+||++|+++ |++|+|||+++++||+++|....|+.+|.|++++++ .+..+.++++++|
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~--~~~~~~~l~~~lg 78 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVA--RNEHVMPLVKDLN 78 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhc--CCHHHHHHHHHcC
Confidence 35799999999999999999986 379999999999999999999899999999999874 3456899999999
Q ss_pred CCeeeec--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHH-------HHHHHHHHHHHHHHhh
Q 010542 102 LPLYRTS--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV-------GEAFESILKETDKVRE 172 (507)
Q Consensus 102 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 172 (507)
++..... ....+++.++...+ +.......+|....... ...+..+.... ....
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~-----------------~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 140 (463)
T PRK12416 79 LEEEMVYNETGISYIYSDNTLHP-----------------IPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFI-TKNK 140 (463)
T ss_pred CccceecCCCCceEEEECCeEEE-----------------CCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhc-cCCC
Confidence 9744321 11222222211000 00000000111100000 00111111111 1111
Q ss_pred cCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc---------cc----------
Q 010542 173 EHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE---------EL---------- 232 (507)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~---------~~---------- 232 (507)
...++.|+.+|++. .++.++.+.++.++ .+.++.+++++|+...... ..
T Consensus 141 ~~~~~~sv~~~l~~-----------~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 209 (463)
T PRK12416 141 EFTKDTSLALFLES-----------FLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ 209 (463)
T ss_pred CCCCCCCHHHHHHH-----------hcCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhc
Confidence 22467899998773 35667777777776 4578888888876431100 00
Q ss_pred --cc--CCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCccccc
Q 010542 233 --LP--GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFE 305 (507)
Q Consensus 233 --~~--~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~ 305 (507)
.. ....++.+||+.++++|.+.+ +|++|++|++|+.+++++.|++.+|+++.||+||+|+|++.+..++ +.
T Consensus 210 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~ 287 (463)
T PRK12416 210 FQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLL--QS 287 (463)
T ss_pred cCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhc--CC
Confidence 01 123468999999999998755 5999999999999999999988888889999999999998877543 23
Q ss_pred CCCcHHHHHHHHHcCCcceeEEEEEccCCCCC-CCccceeecCCCCc----eeeeecc----ccCCCceEEEEEec--cc
Q 010542 306 PRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP-NVEFLGVVSDTSYG----CSYFLNL----HKATGHCVLVYMPA--GQ 374 (507)
Q Consensus 306 p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~----~~~~~~~----~~~~~~~~l~~~~~--~~ 374 (507)
|.+ ...+.++.+.+..++++.|+.+.|. +....|++.+.... ...+.+. ..+++..++..++. +.
T Consensus 288 ~~l----~~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~ 363 (463)
T PRK12416 288 NEL----NEQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNP 363 (463)
T ss_pred cch----hHHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCC
Confidence 433 4456778888999999999977552 12335666543321 1111211 11233334444443 35
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeecc
Q 010542 375 LARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEA 451 (507)
Q Consensus 375 ~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~ 451 (507)
..+.+.+++++++.+.++++|+++++...+|+.+.+.+|... .+.| .+++. ....+.+..+.++|++||++
T Consensus 364 ~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a---~P~y---~~~~~~~~~~~~~~l~~~~~~l~~aG~~ 437 (463)
T PRK12416 364 VYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDL---MPKY---HLEHNQAVQSLQEKMMNLYPNIYLAGAS 437 (463)
T ss_pred CchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEcccc---CCCc---CcCHHHHHHHHHHHHHhhCCCeEEeccc
Confidence 566788899999999999999999987777888999999642 2222 23321 12233455567899999999
Q ss_pred ccCcCCchhhHHHHHHHHHHHHHHHHH
Q 010542 452 TSMSYPGSVHGAFSTGLMAAEDCRMRV 478 (507)
Q Consensus 452 ~~~~~~g~~egA~~SG~~aA~~i~~~l 478 (507)
+.. .+|++|+.||.++|++|++.+
T Consensus 438 ~~g---~~i~~ai~sg~~aA~~i~~~~ 461 (463)
T PRK12416 438 YYG---VGIGACIGNGKNTANEIIATL 461 (463)
T ss_pred ccc---ccHHHHHHHHHHHHHHHHHHh
Confidence 775 689999999999999998764
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=9.2e-38 Score=317.80 Aligned_cols=402 Identities=21% Similarity=0.301 Sum_probs=264.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (507)
++|+|||||+|||+||+.|+++| ++|+|||+++++|||++|....|+.+|.|+|++++ .++.+.++++++|++...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~ 78 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLA--RKPSAPALVKELGLEDEL 78 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcC--CcHHHHHHHHHcCCccce
Confidence 47999999999999999999988 89999999999999999999999999999998874 345689999999997432
Q ss_pred ec--CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHH----HHHHHHH--HHHHHHHhhcCCCCC
Q 010542 107 TS--GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKV----GEAFESI--LKETDKVREEHDEDM 178 (507)
Q Consensus 107 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~ 178 (507)
.. .....++.++.... ++ . ..+. .++....... .....++ ............++.
T Consensus 79 ~~~~~~~~~~~~~g~~~~-~p--------~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (451)
T PRK11883 79 VANTTGQSYIYVNGKLHP-IP--------P---GTVM-----GIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQ 141 (451)
T ss_pred ecCCCCcceEEECCeEEE-CC--------C---CCee-----ccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCc
Confidence 21 12222222221100 00 0 0000 0010000000 0000000 000000111224578
Q ss_pred cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc-----------------cc------cc
Q 010542 179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-----------------EL------LP 234 (507)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-----------------~~------~~ 234 (507)
++.+++.. .+++++.+.++.++ .+.++.+++.+|+...... .. ..
T Consensus 142 s~~e~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T PRK11883 142 SVGAFFRR-----------RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTK 210 (451)
T ss_pred CHHHHHHH-----------hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCC
Confidence 89998863 36677778887776 4678888888876542100 00 01
Q ss_pred CCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHH
Q 010542 235 GGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 311 (507)
Q Consensus 235 ~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~ 311 (507)
....++++|++.++++|.+.+ +|++|++|++|+.+++++.|++++|+++.||+||+|+|+..+..++. ++.
T Consensus 211 ~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~------~~~ 284 (451)
T PRK11883 211 GVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFV------APP 284 (451)
T ss_pred CceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHhcc------Chh
Confidence 123468999999999998855 59999999999999888988888998999999999999998876421 233
Q ss_pred HHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCC--C-ceee-eec----cccCCCceEEEEEeccchhHHHhcCC
Q 010542 312 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTS--Y-GCSY-FLN----LHKATGHCVLVYMPAGQLARDIEKMS 383 (507)
Q Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~--~-~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~ 383 (507)
..+.+..+++.+..++++.|+.+++...+..+++...+ . .... +.. ...+++..++..+..........+++
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~ 364 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDAT 364 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCC
Confidence 46778889999999999999988632223334433211 1 1111 211 12234555554444333233456789
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCC---CCceEEeeccccCcCCchh
Q 010542 384 DEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIP---VDNLFFAGEATSMSYPGSV 460 (507)
Q Consensus 384 ~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~l~~aG~~~~~~~~g~~ 460 (507)
++++++.++++|+++++...++..+.+.+|... +....++.. ...+.+..+ ++|||++|+++.+ +++
T Consensus 365 ~~~~~~~~~~~L~~~~g~~~~~~~~~~~rw~~a------~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i 434 (451)
T PRK11883 365 DEELVAFVLADLSKVMGITGDPEFTIVQRWKEA------MPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGL 434 (451)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEeecCcc------CCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccH
Confidence 999999999999999976556778888999653 222234432 222222222 6799999999753 689
Q ss_pred hHHHHHHHHHHHHHHH
Q 010542 461 HGAFSTGLMAAEDCRM 476 (507)
Q Consensus 461 egA~~SG~~aA~~i~~ 476 (507)
++|+.||..+|++|+.
T Consensus 435 ~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 435 PDCIAQAKRAAARLLA 450 (451)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=2.1e-37 Score=317.98 Aligned_cols=407 Identities=21% Similarity=0.244 Sum_probs=269.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (507)
.++||+|||||++||+||++|+++ |++|+|+|+++++||+++|...+|+.+|.|+|++.. .+..+..++++ |+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~--~~~~~~~l~~~-gl~~~ 87 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQP--SDPELTSAVDS-GLRDD 87 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhcc--CcHHHHHHHHc-CChhh
Confidence 467999999999999999999999 999999999999999999999999999999999863 34455666666 77532
Q ss_pred ee--c-CCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCcHH
Q 010542 106 RT--S-GDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQ 181 (507)
Q Consensus 106 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 181 (507)
.. . ....+++.++...+ ++..+ ..+... ..+. .... +......... ......++.|+.
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~-~p~~~---------~~~~~~--~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~sv~ 149 (496)
T PLN02576 88 LVFPDPQAPRYVVWNGKLRP-LPSNP---------IDLPTF--DLLS--APGK----IRAGLGAFGWKRPPPPGREESVG 149 (496)
T ss_pred eecCCCCceEEEEECCEEEE-cCCCh---------HHhcCc--CcCC--hhHH----HHHhHHHhhccCCCCCCCCCcHH
Confidence 21 1 11112221111000 00000 000000 0000 0011 1111111100 001224678999
Q ss_pred HHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc-----------------c-----------
Q 010542 182 RAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE-----------------L----------- 232 (507)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~-----------------~----------- 232 (507)
+|++. .++++..+.++.++ .+.++.+++++|+....... .
T Consensus 150 ~~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~ 218 (496)
T PLN02576 150 EFVRR-----------HLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEP 218 (496)
T ss_pred HHHHH-----------hcCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccc
Confidence 99873 47778888888886 56888888888876432110 0
Q ss_pred --------ccCCccccccchHHHHHHHhccC---CcccCceeEEEEeeCCc-EEEEEc--CCc-EEEcCEEEEecCchhh
Q 010542 233 --------LPGGHGLMVRGYLPVINTLAKGL---DIRLGHRVTKITRHYIG-VKVTVE--GGK-TFVADAVVVAVPLGVL 297 (507)
Q Consensus 233 --------~~~~~~~~~~G~~~l~~~l~~g~---~i~~~~~V~~I~~~~~~-v~v~~~--~g~-~~~ad~VI~a~p~~~~ 297 (507)
.......+.+||+.|+++|++.+ +|++|++|++|+..+++ |.|++. +|+ ++.||+||+|+|+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l 298 (496)
T PLN02576 219 RDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVV 298 (496)
T ss_pred cccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHH
Confidence 00113567899999999998754 59999999999998876 665543 453 6899999999999988
Q ss_pred ccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCC-------ccceeecCCCCc---e-eeeecc----ccCC
Q 010542 298 KARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNV-------EFLGVVSDTSYG---C-SYFLNL----HKAT 362 (507)
Q Consensus 298 ~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~g~~~~~~~~---~-~~~~~~----~~~~ 362 (507)
..++. ++++...+.+.+++|.+..++.+.|++++|+.. ...|.+...... . ..+.+. ..++
T Consensus 299 ~~ll~----~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~ 374 (496)
T PLN02576 299 SEMLR----PKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPE 374 (496)
T ss_pred HHHhc----ccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCC
Confidence 76532 345667888899999999999999999888642 223443322111 1 122111 1244
Q ss_pred CceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCC--CCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhc-
Q 010542 363 GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLR- 439 (507)
Q Consensus 363 ~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~--~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~- 439 (507)
+..++++++.+.....+.+++++++++.++++|.++++... .|..+.+++|... .+.| .+++. ...+.+.
T Consensus 375 ~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a---~P~~---~~g~~-~~~~~~~~ 447 (496)
T PLN02576 375 GRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKA---IPQY---LLGHL-DVLEAAEK 447 (496)
T ss_pred CCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcc---cCCC---CcCHH-HHHHHHHH
Confidence 56677788887777788889999999999999999997433 5666678889642 2222 23332 2122222
Q ss_pred --CCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542 440 --IPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 479 (507)
Q Consensus 440 --~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~ 479 (507)
.+. +|||+||+++.. .++++|+.||.++|++|++.+.
T Consensus 448 ~l~~~~~~~l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 448 MEKDLGLPGLFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred HHHhcCCCCEEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 222 799999999875 6999999999999999988753
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-37 Score=298.41 Aligned_cols=398 Identities=23% Similarity=0.297 Sum_probs=281.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (507)
+.|+|||||++||+|||+|+|++ .+|+|||+.+++||.++|+..+|+.+|.|++.|... ...+.++++++|++...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~--~~~~l~li~eLGled~l 78 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR--KEEILDLIKELGLEDKL 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecc--hHHHHHHHHHhCcHHhh
Confidence 47999999999999999999999 899999999999999999999999999999988743 47789999999997432
Q ss_pred --ecCCCccccccc-chhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCcHHH
Q 010542 107 --TSGDNSVLYDHD-LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE-TDKVREEHDEDMSIQR 182 (507)
Q Consensus 107 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 182 (507)
+.....+++.++ ... .+. ..+........+ + .....+++.. .........++.++.+
T Consensus 79 ~~~~~~~~~i~~~gkl~p----------~P~---~~i~~ip~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~d~sv~~ 139 (444)
T COG1232 79 LWNSTARKYIYYDGKLHP----------IPT---PTILGIPLLLLS-S-----EAGLARALQEFIRPKSWEPKQDISVGE 139 (444)
T ss_pred ccCCcccceEeeCCcEEE----------CCc---cceeecCCcccc-c-----hhHHHHHHHhhhcccCCCCCCCcCHHH
Confidence 233333333322 211 000 001111111111 0 0111112112 1222234567899999
Q ss_pred HHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccC-c-------cc-c--------------ccCCcc
Q 010542 183 AISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD-K-------EE-L--------------LPGGHG 238 (507)
Q Consensus 183 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~-~-------~~-~--------------~~~~~~ 238 (507)
|++ .++++++++.++.|+ .+.|+.+++.+|+.... . .. . ..+..+
T Consensus 140 f~r-----------~~fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~ 208 (444)
T COG1232 140 FIR-----------RRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFG 208 (444)
T ss_pred HHH-----------HHHhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccc
Confidence 998 468999999999986 78999999999988322 1 00 0 012356
Q ss_pred ccccchHHHHHHHhccC--CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHH
Q 010542 239 LMVRGYLPVINTLAKGL--DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 316 (507)
Q Consensus 239 ~~~~G~~~l~~~l~~g~--~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~ 316 (507)
++.+|+++++++|++.+ +|+++++|++|.++.+++.+.+.+|.++.||.||+|+|++.+..++-. ....+..
T Consensus 209 ~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~------~~~~~~~ 282 (444)
T COG1232 209 YLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGD------EAVSKAA 282 (444)
T ss_pred ccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCC------cchhhhh
Confidence 78899999999999844 688999999999998888888888989999999999999988765322 2346677
Q ss_pred HHcCCcceeEEEEEccCC---CCCCCccceeecCCCCc----ee---eeeccccCCCceEEEEEeccchhHHHhcCCHHH
Q 010542 317 DDLGVGIENKIIMHFDKV---FWPNVEFLGVVSDTSYG----CS---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEA 386 (507)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~---~~~~~~~~g~~~~~~~~----~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee 386 (507)
..+.+.....+.+.+++. ..++. .|+...+... +. .+++...+.|+.++.++...........++|||
T Consensus 283 ~~~~~~s~~~vv~~~~~~~~~~~~~~--~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee 360 (444)
T COG1232 283 KELQYTSVVTVVVGLDEKDNPALPDG--YGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEE 360 (444)
T ss_pred hhccccceEEEEEEeccccccCCCCc--eEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHH
Confidence 888888888888888874 22322 3443322211 12 222233355777887777666656667788999
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCc---hHHHHHhcCCCCceEEeeccccCcCCchhhHH
Q 010542 387 AANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKS---HDLYERLRIPVDNLFFAGEATSMSYPGSVHGA 463 (507)
Q Consensus 387 ~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA 463 (507)
+++.++++|.++++...+|..+.+.+|... ++.| .+|+. ...+..+.+.++||+.+|.+... -++.+|
T Consensus 361 ~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~---~PqY---~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g---~g~~d~ 431 (444)
T COG1232 361 LVAAVLDDLKKLGGINGDPVFVEVTRWKYA---MPQY---EVGHLDRLEPIRAALKGAYPGIKSVGRYGEG---VGLPDC 431 (444)
T ss_pred HHHHHHHHHHHHcCcCcchhheeeeecccc---CCcc---chhHHHHHHHHHHhhccccCCeEEeccCCCC---CCchHH
Confidence 999999999999998888888888999543 3333 24442 33444455555899999999654 378899
Q ss_pred HHHHHHHHHHHH
Q 010542 464 FSTGLMAAEDCR 475 (507)
Q Consensus 464 ~~SG~~aA~~i~ 475 (507)
+.+|..||++++
T Consensus 432 I~~g~~aa~~l~ 443 (444)
T COG1232 432 IAAGKEAAEQLL 443 (444)
T ss_pred HHHHHHHHHHhh
Confidence 999999999865
No 16
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=307.38 Aligned_cols=405 Identities=19% Similarity=0.213 Sum_probs=260.0
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCee--ee
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY--RT 107 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~--~~ 107 (507)
+|+|||||++||+||++|+++|++|+|+|+++++||++++....|+.+|.|+|++.+ .+..+.++++++|+... ..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~--~~~~~~~l~~~lg~~~~~~~~ 78 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFK--SDEALLELLDELGLEDKLRWR 78 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhcc--ccHHHHHHHHHcCCCCceeec
Confidence 589999999999999999999999999999999999999999899999999998864 45688999999998632 11
Q ss_pred cCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCcHHHHHHH
Q 010542 108 SGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK-VREEHDEDMSIQRAISI 186 (507)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (507)
.....+.+.+. ..+ +..+ . .+... ..++. .......+.. ..... ......++.++.+++..
T Consensus 79 ~~~~~~~~~~~-~~~-~~~~-~---------~~~~~--~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~l~~ 140 (434)
T PRK07233 79 ETKTGYYVDGK-LYP-LGTP-L---------ELLRF--PHLSL--IDKFRLGLLT--LLARRIKDWRALDKVPAEEWLRR 140 (434)
T ss_pred cCceEEEECCe-Eec-CCCH-H---------HHHcC--CCCCH--HHHHHhHHHH--HhhhhcccccccccccHHHHHHH
Confidence 11211222111 100 0000 0 00000 00111 1111111110 00111 11123456888888764
Q ss_pred HhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc---------ccCCccccccchHHHHHHHhc---
Q 010542 187 VFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL---------LPGGHGLMVRGYLPVINTLAK--- 253 (507)
Q Consensus 187 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~---------~~~~~~~~~~G~~~l~~~l~~--- 253 (507)
. ++++..+.++.++ ...++.+++++++..+..... ......++++|++.++++|.+
T Consensus 141 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~ 209 (434)
T PRK07233 141 W-----------SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIE 209 (434)
T ss_pred h-----------cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHH
Confidence 3 3445566666664 457788888888765431110 012356789999999999965
Q ss_pred --cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEc
Q 010542 254 --GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 331 (507)
Q Consensus 254 --g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~ 331 (507)
|++|++|++|++|+.+++++++.+.+++++.||+||+|+|+..+..++ |.+++...+.+..+.+.+..++++.+
T Consensus 210 ~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll----~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILARLV----PDLPADVLARLRRIDYQGVVCMVLKL 285 (434)
T ss_pred hcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHHhhc----CCCcHHHHhhhcccCccceEEEEEEe
Confidence 778999999999999888877555677799999999999998876542 45666667778888888888889999
Q ss_pred cCCCCCCCccceeecCCCCce--e---eeeccccCCCceEE--EEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCCCC
Q 010542 332 DKVFWPNVEFLGVVSDTSYGC--S---YFLNLHKATGHCVL--VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASS 404 (507)
Q Consensus 332 ~~~~~~~~~~~g~~~~~~~~~--~---~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~ 404 (507)
++++++ ..+.....+..... . ++.....+++..++ .+++.+.. .+..++++++++.++++|++++|++..
T Consensus 286 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~p~~~~ 362 (434)
T PRK07233 286 RRPLTD-YYWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH--PLWQMSDEELLDRFLSYLRKMFPDFDR 362 (434)
T ss_pred cCCCCC-CceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC--hhhcCCHHHHHHHHHHHHHHhCCCCCh
Confidence 987533 11111001000011 1 11111122444443 33444332 245678999999999999999997632
Q ss_pred --CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHHHH
Q 010542 405 --PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVL 479 (507)
Q Consensus 405 --~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~l~ 479 (507)
+....+.+| +++.+.+ .++. ....+.+.++++|||+||+++...+.++|++|+.||..||++|++.++
T Consensus 363 ~~~~~~~~~r~---~~a~~~~---~~g~-~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 363 DDVRAVRISRA---PYAQPIY---EPGY-LDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred hheeeEEEEEe---ccccccc---cCch-hhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 344444444 3343332 2332 244455677889999999954443446899999999999999988765
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1.2e-35 Score=301.18 Aligned_cols=418 Identities=20% Similarity=0.250 Sum_probs=257.2
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (507)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|.. .+|+.+|.|.|++.+ .+.++.++++++|+......
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lg~~~~~~~ 78 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFG--AYPNMLQLLKELNIEDRLQW 78 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceecc--CCchHHHHHHHcCCccceee
Confidence 589999999999999999999999999999999999999864 578999999999874 45578999999998643221
Q ss_pred CCCcccccc---cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH--HhhcCCCCCcHHHH
Q 010542 109 GDNSVLYDH---DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK--VREEHDEDMSIQRA 183 (507)
Q Consensus 109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 183 (507)
......+.. +.....+..+.. +.+.+....++... ..++. ..... ....+...... -.....++.|+.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (453)
T TIGR02731 79 KSHSMIFNQPDKPGTFSRFDFPDI-PAPFNGVAAILRNN-DMLTW--PEKIK-FAIGLLPAIVRGQKYVEEQDKYTVTEW 153 (453)
T ss_pred cCCceEEecCCCCcceeeccCCCC-CCCHHHHHHHhcCc-CCCCH--HHHHH-HHHHhHHHHhcCccchhhhccCCHHHH
Confidence 111111110 000000000000 00000000000000 00111 00100 00001100000 00112357889888
Q ss_pred HHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccCcccc--cc--CCc--cccccc-----hHHHHHHH
Q 010542 184 ISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKEEL--LP--GGH--GLMVRG-----YLPVINTL 251 (507)
Q Consensus 184 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~--~~--~~~--~~~~~G-----~~~l~~~l 251 (507)
++. .++++.+.+.++.++. +.++.+++++|+..+..... +. .+. ....++ ++.+.+.|
T Consensus 154 l~~----------~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l 223 (453)
T TIGR02731 154 LRK----------QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYI 223 (453)
T ss_pred HHH----------cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHH
Confidence 763 3466666766767763 56677888888766541110 11 111 112222 45555555
Q ss_pred hc-cCCcccCceeEEEEeeCCc-E-EEEEcCCc-----EEEcCEEEEecCchhhccCcccccCCCc-HHHHHHHHHcCCc
Q 010542 252 AK-GLDIRLGHRVTKITRHYIG-V-KVTVEGGK-----TFVADAVVVAVPLGVLKARTIKFEPRLP-DWKEAAIDDLGVG 322 (507)
Q Consensus 252 ~~-g~~i~~~~~V~~I~~~~~~-v-~v~~~~g~-----~~~ad~VI~a~p~~~~~~l~~~~~p~l~-~~~~~~~~~~~~~ 322 (507)
.+ |++|++|++|++|...+++ + .|++.+|+ ++.+|.||+|+|++.+..++ .+..+ ....+.+..+++.
T Consensus 224 ~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL---~~~~~~~~~~~~~~~~~~~ 300 (453)
T TIGR02731 224 TSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLL---PQPWKQMPFFQKLNGLEGV 300 (453)
T ss_pred HhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhC---chhhhcCHHHHHhhcCCCC
Confidence 43 8899999999999865443 4 36666665 78999999999998876542 11121 2345566677788
Q ss_pred ceeEEEEEccCCCCCCCccceeecCCCCceeeee-c----cccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHH
Q 010542 323 IENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFL-N----LHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKK 397 (507)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~ 397 (507)
+..++++.++++++....+. +......+.... . ...++++.++.++... ...+.++++|++++.++++|++
T Consensus 301 ~~~~v~l~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ee~~~~v~~~L~~ 376 (453)
T TIGR02731 301 PVINVHIWFDRKLTTVDHLL--FSRSPLLSVYADMSETCKEYADPDKSMLELVFAP--AADWIGRSDEEIIDATMAELAK 376 (453)
T ss_pred cEEEEEEEEccccCCCCcee--eeCCCcceeecchhhhChhhcCCCCeEEEEEecC--hhhhhcCCHHHHHHHHHHHHHH
Confidence 89999999999987543221 111111110000 0 0112334444444332 3567789999999999999999
Q ss_pred hCCCC---CCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542 398 ILPDA---SSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 474 (507)
Q Consensus 398 ~~p~~---~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i 474 (507)
++|.. ..+.++..+.|..++++. |. ..||. ....+.+.+|++|||+||++++.+|+|+||||+.||.+||++|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~p~a~--~~-~~pg~-~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 377 LFPNHIKADSPAKILKYKVVKTPRSV--YK-TTPGR-QQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred hCCcccCCCCCceEEEEEEEECCCce--ec-cCCCC-hhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 99863 246667778888888773 32 34664 4667788999999999999999889999999999999999986
Q ss_pred H
Q 010542 475 R 475 (507)
Q Consensus 475 ~ 475 (507)
+
T Consensus 453 ~ 453 (453)
T TIGR02731 453 V 453 (453)
T ss_pred C
Confidence 3
No 18
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=1.3e-36 Score=308.99 Aligned_cols=234 Identities=37% Similarity=0.538 Sum_probs=189.7
Q ss_pred cccchHHHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHH
Q 010542 240 MVRGYLPVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAID 317 (507)
Q Consensus 240 ~~~G~~~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~ 317 (507)
..+++..+...+.+ |.+|++|++|++|+.+++++.|++.+|+++.||+||+|+|+..+.. +.+.|.+|...++++.
T Consensus 207 ~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~ 284 (450)
T PF01593_consen 207 GMGGLSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIE 284 (450)
T ss_dssp ETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHH
T ss_pred cccchhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhhhhh--hhhccccccccccccc
Confidence 34555555555544 6799999999999999999999999999999999999999999874 5678899998899999
Q ss_pred HcCCcceeEEEEEccCCCCCCC-ccceeecCCC--CceeeeeccccC--CCceEEEEEeccchhHHHhcCCHHHHHHHHH
Q 010542 318 DLGVGIENKIIMHFDKVFWPNV-EFLGVVSDTS--YGCSYFLNLHKA--TGHCVLVYMPAGQLARDIEKMSDEAAANFAF 392 (507)
Q Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~ 392 (507)
.+++.+..++++.|+.++|+.. ...+.+..+. ....+......+ ++...++.++.+.....+..++++++++.++
T Consensus 285 ~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 364 (450)
T PF01593_consen 285 NLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVL 364 (450)
T ss_dssp TEEEEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccCcceeEEEeeecccccccccccceecccCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHH
Confidence 9999999999999999999875 4556655444 222222222222 3567788888877778889999999999999
Q ss_pred HHHHHhCC--CCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCC-CceEEeeccccCcCCchhhHHHHHHHH
Q 010542 393 TQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV-DNLFFAGEATSMSYPGSVHGAFSTGLM 469 (507)
Q Consensus 393 ~~L~~~~p--~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~g~~egA~~SG~~ 469 (507)
++|++++| ...+|.++.+.+|..+++..+++.+..++.....++.+.+|+ +||||||++++++++|+++||+.||.+
T Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~ 444 (450)
T PF01593_consen 365 DDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRR 444 (450)
T ss_dssp HHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHH
Confidence 99999999 456677888999999999988888776776556888899999 699999999998777899999999999
Q ss_pred HHHHHH
Q 010542 470 AAEDCR 475 (507)
Q Consensus 470 aA~~i~ 475 (507)
||++|+
T Consensus 445 aA~~il 450 (450)
T PF01593_consen 445 AAEEIL 450 (450)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999986
No 19
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.4e-35 Score=304.91 Aligned_cols=427 Identities=20% Similarity=0.228 Sum_probs=254.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (507)
....+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .+|+.+|.|+|++.+. ++++.++++++|+..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~--~~~~~~ll~elG~~~ 168 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA--YPNVQNLFGELGIND 168 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCC--CchHHHHHHHhCCcc
Confidence 4568899999999999999999999999999999999999999865 4789999999999854 456899999999964
Q ss_pred eeecCCCcccc--ccc-chhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHH--HHhhcCCCCCc
Q 010542 105 YRTSGDNSVLY--DHD-LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETD--KVREEHDEDMS 179 (507)
Q Consensus 105 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 179 (507)
..........+ ... .....+..+...+.+.+....++.... .+ .+.+.+. ....+..... .......++.|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~-~l--s~~~kl~-~~~~~~~~~~~~~~~~~~~d~~S 244 (567)
T PLN02612 169 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNE-ML--TWPEKIK-FAIGLLPAIVGGQAYVEAQDGLS 244 (567)
T ss_pred cceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCc-cC--CHHHHHH-HHHhhhHHhcccchhhhhcCcCc
Confidence 32111111111 100 000000000000000000000000000 00 0001100 0000000000 00112345788
Q ss_pred HHHHHHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccCcc--ccccC----Cccccccch-----HHH
Q 010542 180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDKE--ELLPG----GHGLMVRGY-----LPV 247 (507)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~--~~~~~----~~~~~~~G~-----~~l 247 (507)
+.+|++. .++++.+.+.++.++. +.+..+++++|+..+... ..+.+ ...++.++. +.+
T Consensus 245 v~e~l~~----------~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l 314 (567)
T PLN02612 245 VKEWMRK----------QGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPI 314 (567)
T ss_pred HHHHHHh----------cCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHH
Confidence 8888764 2455556666666653 455667777776654411 01111 112233332 444
Q ss_pred HHHHh-ccCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcce
Q 010542 248 INTLA-KGLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 324 (507)
Q Consensus 248 ~~~l~-~g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~ 324 (507)
++.|. .|++|++|++|++|..++++ +.+.+.+|+++.+|+||+|+|+..+..++.... .+....+.+..+.+.++
T Consensus 315 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~~~v 392 (567)
T PLN02612 315 VDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVGVPV 392 (567)
T ss_pred HHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCCCCe
Confidence 55443 38899999999999986555 337777898999999999999988775432211 12234555667778889
Q ss_pred eEEEEEccCCCCCCCccceeecCCC-Cceeeeecc-----ccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHh
Q 010542 325 NKIIMHFDKVFWPNVEFLGVVSDTS-YGCSYFLNL-----HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI 398 (507)
Q Consensus 325 ~~~~l~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~ 398 (507)
.++++.|++++|.... +.+.... ....+.+-+ ..+++..++.+... .+.+|.+++++++++.++++|+++
T Consensus 393 ~~v~l~~dr~~~~~~~--~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~--~a~~~~~~sdeei~e~vl~~L~~l 468 (567)
T PLN02612 393 INVHIWFDRKLKNTYD--HLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFA--PAEEWISRSDEDIIDATMKELAKL 468 (567)
T ss_pred EEEEEEECcccCCCCC--ceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEE--cChhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999875321 1111111 111111100 01234444443322 456788899999999999999999
Q ss_pred CCCCCCC----cEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHH
Q 010542 399 LPDASSP----IQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDC 474 (507)
Q Consensus 399 ~p~~~~~----~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i 474 (507)
||....+ ..+....+...|.+. |.. .|+.. ..++..++|++|||+|||++..+|+++||||+.||++||++|
T Consensus 469 fp~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~~-~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I 544 (567)
T PLN02612 469 FPDEISADQSKAKILKYHVVKTPRSV--YKT-VPNCE-PCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSI 544 (567)
T ss_pred CCcccccccCCceEEEEEEeccCCce--EEe-CCCCc-ccCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHH
Confidence 9975322 222222333333321 211 23322 234556789999999999999888899999999999999999
Q ss_pred HHHH
Q 010542 475 RMRV 478 (507)
Q Consensus 475 ~~~l 478 (507)
++++
T Consensus 545 ~~~~ 548 (567)
T PLN02612 545 VQDY 548 (567)
T ss_pred HHHh
Confidence 8876
No 20
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=296.20 Aligned_cols=401 Identities=19% Similarity=0.144 Sum_probs=257.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCC-e
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP-L 104 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~-~ 104 (507)
.+++||+|||||++||+||++|+++|++|+|+|+++++||+++|....|+.+|.|+|++.. .+..+.+++++++.. .
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~--~~~~~~~l~~~l~~~~~ 79 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFS--KSPEVMDLWNEILPDDD 79 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceecc--CCHHHHHHHHHhcCCCc
Confidence 4678999999999999999999999999999999999999999998899999999999873 566789999999862 1
Q ss_pred eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHH---HHHH--HHHHHHHHHHHHHHHhhcCCCCCc
Q 010542 105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQE---LVTK--VGEAFESILKETDKVREEHDEDMS 179 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 179 (507)
.........++..+... .+|.. .... ....+...............++.|
T Consensus 80 ~~~~~~~~~~~~~g~~~-------------------------~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s 134 (479)
T PRK07208 80 FLLRPRLSRIYYRGKFF-------------------------DYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDS 134 (479)
T ss_pred cccccccceEEECCEEe-------------------------cCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCC
Confidence 11111111111111000 01100 0000 001111111111111112246789
Q ss_pred HHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCccc------------c--------------
Q 010542 180 IQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE------------L-------------- 232 (507)
Q Consensus 180 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~------------~-------------- 232 (507)
+.+|++. .+++++.+.++.++ .+.|+.+++++|+.+..... .
T Consensus 135 ~~e~l~~-----------~~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (479)
T PRK07208 135 FEDWVIN-----------RFGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVE 203 (479)
T ss_pred HHHHHHH-----------hhCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcc
Confidence 9999873 46677788888876 45788888888876432110 0
Q ss_pred --ccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE--EEE--cCCc--EEEcCEEEEecCchhhcc
Q 010542 233 --LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK--VTV--EGGK--TFVADAVVVAVPLGVLKA 299 (507)
Q Consensus 233 --~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~--v~~--~~g~--~~~ad~VI~a~p~~~~~~ 299 (507)
......++++|++.++++|.+ |++|++|++|++|..+++++. ++. .+|+ ++.||+||+|+|+..+..
T Consensus 204 ~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~ 283 (479)
T PRK07208 204 TSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA 283 (479)
T ss_pred ccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH
Confidence 011244678999999998864 779999999999999887643 332 2353 588999999999987765
Q ss_pred CcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeecCCCCc------eeeeeccccCCCce-EEE-EEe
Q 010542 300 RTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYG------CSYFLNLHKATGHC-VLV-YMP 371 (507)
Q Consensus 300 l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~-~l~-~~~ 371 (507)
++ .+.+++...+.+..+++.+..++++.++++.+....+. ++.+.... ...+.+...|++.. .+. .+.
T Consensus 284 ~l---~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~p~g~~~~l~~~~~ 359 (479)
T PRK07208 284 AL---DPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWI-YIHDPDVKVGRLQNFNNWSPYLVPDGRDTWLGLEYF 359 (479)
T ss_pred hc---CCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceE-EecCCCCccceecccccCCcccCCCCCceEEEEEEE
Confidence 43 35577777788888999888889999987643222221 11111100 01111222244542 222 122
Q ss_pred ccchhHHHhcCCHHHHHHHHHHHHHHhCCC-CCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHH---hcCCCCceEE
Q 010542 372 AGQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYER---LRIPVDNLFF 447 (507)
Q Consensus 372 ~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~-~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~l~~ 447 (507)
.. ......++++++++++++++|.++.+. ...+..+.+.+|. .+.+.|. .++. ...+. +.++.+||++
T Consensus 360 ~~-~~~~~~~~~deel~~~~~~~L~~l~~~~~~~~~~~~v~r~~---~a~P~y~---~~~~-~~~~~~~~~~~~~~~l~l 431 (479)
T PRK07208 360 CF-EGDDLWNMSDEDLIALAIQELARLGLIRPADVEDGFVVRVP---KAYPVYD---GTYE-RNVEIIRDLLDHFPNLHL 431 (479)
T ss_pred cc-CCCccccCCHHHHHHHHHHHHHHcCCCChhheeEEEEEEec---CcccCCC---chHH-HHHHHHHHHHHhcCCcee
Confidence 11 122355789999999999999997432 2234556667774 2333332 3332 22222 3467799999
Q ss_pred eeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542 448 AGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477 (507)
Q Consensus 448 aG~~~~~~~~g~~egA~~SG~~aA~~i~~~ 477 (507)
+|++....+ .++|+|+.||.++|++|+..
T Consensus 432 aGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 432 VGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred ecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 999876655 69999999999999987664
No 21
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=1.1e-33 Score=286.85 Aligned_cols=433 Identities=17% Similarity=0.131 Sum_probs=264.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc-CCCeeeecCCceeeCCCCCCchHHHHHhcCCCee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY-SFGFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~ 105 (507)
++++|+|||||++||++|+.|+++|++|+|+|+++++||++++.. ..|+.+|+|.|++.+. +.++.++++++|+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~--~~~~~~ll~~LGl~~~ 151 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGC--YNNLFRLMKKVGADEN 151 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCC--cHHHHHHHHhcCCccc
Confidence 457999999999999999999999999999999999999999874 5699999999999754 4579999999999743
Q ss_pred eecCCCcc-cccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHH----HHHHHHHHH----H-hhcCC
Q 010542 106 RTSGDNSV-LYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAF----ESILKETDK----V-REEHD 175 (507)
Q Consensus 106 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~-~~~~~ 175 (507)
........ +...+.....+........+.+....++.... +. +..++.... ..+...... . .....
T Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~--Ls--~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~ 227 (569)
T PLN02487 152 LLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQ--LE--PYDKARNALALATSPVVRALVDPDGAMRDIRDL 227 (569)
T ss_pred ccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCC--CC--HHHHHhhcccccccchhhhccCccccccccccc
Confidence 22111111 11111000000000000000000000000000 00 000000000 000000000 0 01134
Q ss_pred CCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcccc----cc--CCccccccchHH-H
Q 010542 176 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEEL----LP--GGHGLMVRGYLP-V 247 (507)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~----~~--~~~~~~~~G~~~-l 247 (507)
++.++.+|++.. ..+.++++.++.++ .+.+..+++++|+..+..... .. +..+++.+|+.. +
T Consensus 228 d~~sv~~~l~r~----------~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l 297 (569)
T PLN02487 228 DDISFSDWFTSH----------GGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRL 297 (569)
T ss_pred cCCcHHHHHHHh----------CCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHH
Confidence 568899988743 33345788888887 468889999999876552211 11 124577889884 7
Q ss_pred HHHHhc-----cCCcccCceeEEEEeeC--Cc---E-EEEE---cCCcEEEcCEEEEecCchhhccCcccccCCCcHHHH
Q 010542 248 INTLAK-----GLDIRLGHRVTKITRHY--IG---V-KVTV---EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 313 (507)
Q Consensus 248 ~~~l~~-----g~~i~~~~~V~~I~~~~--~~---v-~v~~---~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~ 313 (507)
.+.+.+ |++|+++++|++|..++ ++ + .|++ .+++++.+|.||+|+|+..+.+++....+.. ...
T Consensus 298 ~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~--~~~ 375 (569)
T PLN02487 298 SGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREY--EFF 375 (569)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhcc--HHH
Confidence 766643 88999999999999873 22 3 2555 2344689999999999998876542221111 125
Q ss_pred HHHHHcCCcceeEEEEEccCCCCCCC---------ccceee-----cCCCCceeee---eccc---cCCCceEEEEEecc
Q 010542 314 AAIDDLGVGIENKIIMHFDKVFWPNV---------EFLGVV-----SDTSYGCSYF---LNLH---KATGHCVLVYMPAG 373 (507)
Q Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~g~~-----~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~ 373 (507)
..+..+...++..+.+.||.++-... .+.|.. .+..+.+... .... .......+.+++..
T Consensus 376 ~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~ 455 (569)
T PLN02487 376 DNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTP 455 (569)
T ss_pred hHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcC
Confidence 56778878888899999997653211 122211 1111222001 0000 11122445554443
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeecc
Q 010542 374 QLARDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEA 451 (507)
Q Consensus 374 ~~~~~~~~~~~ee~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~ 451 (507)
. ..+..++++++++++.++|.+++|.... +.++.+.+.....+. ..||.. ..+|..++|++|||+||||
T Consensus 456 a--~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~------~~pg~~-~~RP~~~T~~~nl~LAGD~ 526 (569)
T PLN02487 456 G--DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYR------EAPGMD-PFRPDQKTPISNFFLAGSY 526 (569)
T ss_pred C--ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceec------cCCCcc-ccCCCCCCCCCCEEEeCcc
Confidence 3 3577899999999999999999987543 233344444332221 234442 4457778999999999999
Q ss_pred ccCcCCchhhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 010542 452 TSMSYPGSVHGAFSTGLMAAEDCRMRVLERYGELD 486 (507)
Q Consensus 452 ~~~~~~g~~egA~~SG~~aA~~i~~~l~~~~~~~~ 486 (507)
+..+|+.+||||+.||..||+.|+++...-.++..
T Consensus 527 t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~ 561 (569)
T PLN02487 527 TKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRK 561 (569)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999887744434333
No 22
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=3.3e-33 Score=281.83 Aligned_cols=397 Identities=23% Similarity=0.258 Sum_probs=252.7
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCceeEeccCCCe--eeecCCceeeCCCCCCchHHHHHhcCCCeeeecCCCccccc--c
Q 010542 42 AAARALHDASFKVVLLESRDRVGGRVHTDYSFGF--PVDLGASWLHGVCQENPLAPVISRLGLPLYRTSGDNSVLYD--H 117 (507)
Q Consensus 42 ~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~--~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~--~ 117 (507)
+||++|+++|++|+|||+++++||+++|...+|+ .+|.|+|++++ .+..+.++++++|++.........+.+. +
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~--~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~ 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLG--AYTNLLALLRRIGAEPRLQGPRLPLPFYDPG 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEc--ccHHHHHHHHHhCCchhhhcccCCcceecCC
Confidence 5899999999999999999999999999988754 59999999974 4567899999999975432111111111 1
Q ss_pred cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhccChhHHhh
Q 010542 118 DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLE 197 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 197 (507)
+... .+..... ..+......+. ....++...... +...+...........++.|+.++++..
T Consensus 79 ~~~~-~~~~~~~-~~p~~~~~~~~--~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~l~~~---------- 140 (419)
T TIGR03467 79 GRLS-RLRLSRL-PAPLHLARGLL--RAPGLSWADKLA----LARALLALRRTRFRALDDTTVGDWLQAA---------- 140 (419)
T ss_pred CCce-eecCCCC-CCCHHHHHHHh--cCCCCCHHHHHH----HHHHHHHHHhcCccccCCCCHHHHHHHc----------
Confidence 1100 0000000 00000000000 000111111111 1111111111111345678999988742
Q ss_pred hhHHHHHHHHHHhh-hccccCCcccccccccCccc---ccc----CCccccccchHHHHHH-Hh-----ccCCcccCcee
Q 010542 198 GLAHKVLQWYLCRM-EGWFAADAETISLKSWDKEE---LLP----GGHGLMVRGYLPVINT-LA-----KGLDIRLGHRV 263 (507)
Q Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~---~~~----~~~~~~~~G~~~l~~~-l~-----~g~~i~~~~~V 263 (507)
.+++++.+.++.++ .+.++.+++++|+..+.... ... ....++.+|++.++.. |+ .|++|++|++|
T Consensus 141 ~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V 220 (419)
T TIGR03467 141 GQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRV 220 (419)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCee
Confidence 34667777777775 45788888888877554211 111 1255678898776533 43 38899999999
Q ss_pred EEEEeeCCcEEEEE-cCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccc
Q 010542 264 TKITRHYIGVKVTV-EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFL 342 (507)
Q Consensus 264 ~~I~~~~~~v~v~~-~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 342 (507)
++|+.+++++.+.. .+|+++.||+||+|+|+..+..++ |. +...+.+..+++.++.++++.|++++|.+.++.
T Consensus 221 ~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll----~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~ 294 (419)
T TIGR03467 221 RSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLL----PG--EDLGALLTALGYSPITTVHLRLDRAVRLPAPMV 294 (419)
T ss_pred eEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhC----CC--chHHHHHhhcCCcceEEEEEEeCCCcCCCCCee
Confidence 99999988876543 467789999999999999887642 11 145667888999999999999999998665555
Q ss_pred eeecCCCCceeeeeccccCCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCCCC--CCCcEEEeccCCCCCCCC
Q 010542 343 GVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDA--SSPIQYLVSHWGTDANSL 420 (507)
Q Consensus 343 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p~~--~~~~~~~~~~w~~~~~~~ 420 (507)
|..... ..+.+.....++....+.+++.+ ...+.+++++++.+.++++|.+++|.. ..+....+.+|....+.
T Consensus 295 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 369 (419)
T TIGR03467 295 GLVGGL--AQWLFDRGQLAGEPGYLAVVISA--ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFA- 369 (419)
T ss_pred eecCCc--eeEEEECCcCCCCCCEEEEEEec--chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccc-
Confidence 554322 22233322222233444444433 355778899999999999999999865 23445555666443221
Q ss_pred cccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHH
Q 010542 421 GSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 475 (507)
Q Consensus 421 g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~ 475 (507)
. .++.. ..++.+.+|.+|||||||+++++++++||||+.||.+||++|+
T Consensus 370 ----~-~~g~~-~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 370 ----A-TPGLN-RLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred ----c-CCccc-ccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 1 13322 3344456788999999999998888899999999999999876
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=2e-33 Score=283.61 Aligned_cols=419 Identities=18% Similarity=0.161 Sum_probs=249.6
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEec-cCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeeec
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD-YSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRTS 108 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~ 108 (507)
+|+|||||++||+||++|+++|++|+|+|+++++||++++. ...|+.+|.|+|++.+. +.++.++++++|+......
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lg~~~~~~~ 78 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGC--YANLFRLMKKVGAEDNLLL 78 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCc--hHHHHHHHHHcCCcccccc
Confidence 58999999999999999999999999999999999999996 45799999999999853 4578999999998632211
Q ss_pred CCCcc-cccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHH-HHHHHHH---h-----hcCCCCC
Q 010542 109 GDNSV-LYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESI-LKETDKV---R-----EEHDEDM 178 (507)
Q Consensus 109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-----~~~~~~~ 178 (507)
..... +...+.....+........+.+....++......+. .++....... ......+ . ....++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~----dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (474)
T TIGR02732 79 KEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV----DKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKI 154 (474)
T ss_pred ccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHH----HHHHHHHHhhhhHHHhhccccchhhhhhhhhccc
Confidence 11111 111110000000000000000000011110000111 1111000000 0000000 0 1123568
Q ss_pred cHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc--ccc---ccC-Cccccccc-----hHH
Q 010542 179 SIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK--EEL---LPG-GHGLMVRG-----YLP 246 (507)
Q Consensus 179 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~--~~~---~~~-~~~~~~~G-----~~~ 246 (507)
++.++++.. +.++.+++.++.++ .+.+..+++++|+..+.. ..+ ..+ ....+.+| ++.
T Consensus 155 t~~~~l~~~----------~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~p 224 (474)
T TIGR02732 155 SFAEWFLSH----------GGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKP 224 (474)
T ss_pred cHHHHHHHc----------CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHH
Confidence 888887742 34555788888886 467788888998776531 111 111 22344454 345
Q ss_pred HHHHHhc-cCCcccCceeEEEEeeC--Cc---EE-EEEcCC---cEEEcCEEEEecCchhhccCcccccCCCcHHHHHHH
Q 010542 247 VINTLAK-GLDIRLGHRVTKITRHY--IG---VK-VTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAI 316 (507)
Q Consensus 247 l~~~l~~-g~~i~~~~~V~~I~~~~--~~---v~-v~~~~g---~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~ 316 (507)
+++.|.+ |++|+++++|++|..++ ++ ++ |++.+| +++.+|+||+|+|++.+.+++....+. ......+
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~--~~~~~~l 302 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQ--FEEFDNI 302 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhc--CHHHhhH
Confidence 7777765 88999999999999864 22 32 445444 468999999999999887754221110 1245667
Q ss_pred HHcCCcceeEEEEEccCCCCCCCc---------ccee-----ecCCCCceeee-----e-ccccCCCceEEEEEeccchh
Q 010542 317 DDLGVGIENKIIMHFDKVFWPNVE---------FLGV-----VSDTSYGCSYF-----L-NLHKATGHCVLVYMPAGQLA 376 (507)
Q Consensus 317 ~~~~~~~~~~~~l~~~~~~~~~~~---------~~g~-----~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~ 376 (507)
..+.+.++..+++.|+++.-.... ..+. +....+.+... . .+.......++.+++...
T Consensus 303 ~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 380 (474)
T TIGR02732 303 YKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPG-- 380 (474)
T ss_pred hcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeCh--
Confidence 788888999999999865532210 1111 01111111000 0 011122233344444332
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhCCCCCC--CcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccC
Q 010542 377 RDIEKMSDEAAANFAFTQLKKILPDASS--PIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSM 454 (507)
Q Consensus 377 ~~~~~~~~ee~~~~~~~~L~~~~p~~~~--~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~ 454 (507)
..+.+++++++.+.++++|+++||.... +.+..+.+.....+. ..||.. ..+|..++|++|||+||||+..
T Consensus 381 ~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~------~~pg~~-~~~P~~~t~~~~l~lAGD~t~~ 453 (474)
T TIGR02732 381 DPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYR------EAPGMD-PFRPDQKTPISNFFLAGSYTQQ 453 (474)
T ss_pred hhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceec------cCCCCc-ccCCCCCCCCCCeEEecccccc
Confidence 3577789999999999999999997543 233334444332111 124442 4456677899999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHH
Q 010542 455 SYPGSVHGAFSTGLMAAEDCR 475 (507)
Q Consensus 455 ~~~g~~egA~~SG~~aA~~i~ 475 (507)
+|+.++|||+.||.+||+.|+
T Consensus 454 ~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 454 DYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999763
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=6.7e-32 Score=276.40 Aligned_cols=426 Identities=17% Similarity=0.138 Sum_probs=239.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee--
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR-- 106 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~-- 106 (507)
.||+|||||++||+||.+|+++|++|+|+|+++++||+++|+..+|+.+|.|++++.+........++++++|++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 689999999999999999999999999999999999999999999999999999997644445577889999987321
Q ss_pred -ecCCCccccccc-chhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHH---------------
Q 010542 107 -TSGDNSVLYDHD-LESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK--------------- 169 (507)
Q Consensus 107 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 169 (507)
........+.++ .......... .+.. .+...+... .++.....+.+..+......
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~~d~~-~~~~--~l~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLWHDPD-RWQK--ERERQFPGS-----ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQL 153 (492)
T ss_pred cCCCCcEEEECCCceEeeeecCHH-HHHH--HHHHHCCCh-----HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Confidence 111111111111 0000000000 0000 000000000 01111111111100000000
Q ss_pred ---H-----hhcCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhc-cccCCcccccccccC---ccccccCCc
Q 010542 170 ---V-----REEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEG-WFAADAETISLKSWD---KEELLPGGH 237 (507)
Q Consensus 170 ---~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~---~~~~~~~~~ 237 (507)
+ ........++.++++.. ..+.++.++.++..... +.+.++.+.+..... .......+.
T Consensus 154 ~~~~~~~~~~~~~~~~~s~~~~l~~~---------~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 224 (492)
T TIGR02733 154 VSALRPDTLLTGPLSLLTVADLLRLC---------GLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMAQAPHGL 224 (492)
T ss_pred HHhcChhhhhhhhhhhhhHHHHHHHh---------CCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhccccCCCc
Confidence 0 00000112222322211 01344455555554333 333334444433321 111123456
Q ss_pred cccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE-EEEcCC-----cEEEcCEEEEecCchhhccCcccccC
Q 010542 238 GLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGG-----KTFVADAVVVAVPLGVLKARTIKFEP 306 (507)
Q Consensus 238 ~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~-v~~~~g-----~~~~ad~VI~a~p~~~~~~l~~~~~p 306 (507)
.+++||++.|+++|.+ |++|+++++|++|..+++++. +.+.+| +++.||+||+|+|+..+..++ . .+
T Consensus 225 ~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~ 302 (492)
T TIGR02733 225 WHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PL 302 (492)
T ss_pred eeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cc
Confidence 6799999999999965 789999999999999877532 434343 578999999999998877643 2 35
Q ss_pred CCcHHHHHHHHHcCCcce-eEEEEEccCCCCC--CCccceeecCC-CCceeee---eccccCCCceEEEEEeccch----
Q 010542 307 RLPDWKEAAIDDLGVGIE-NKIIMHFDKVFWP--NVEFLGVVSDT-SYGCSYF---LNLHKATGHCVLVYMPAGQL---- 375 (507)
Q Consensus 307 ~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~--~~~~~g~~~~~-~~~~~~~---~~~~~~~~~~~l~~~~~~~~---- 375 (507)
.+++...+.+..+++.+. ..+++.++....+ .......+... ....... ++...|+|+..+++......
T Consensus 303 ~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~ 382 (492)
T TIGR02733 303 GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDHQGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWS 382 (492)
T ss_pred cCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCCCceEEEEeCCccccCCCCCceEEEEEcCCCHHHHc
Confidence 677777777888887654 3677888763211 11111111111 1111111 11234667777654433221
Q ss_pred ---hHHHhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCC----C-CCCCcc-cccCC-CCCchHHHHHhcCCCCce
Q 010542 376 ---ARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGT----D-ANSLGS-YSYDT-VGKSHDLYERLRIPVDNL 445 (507)
Q Consensus 376 ---~~~~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~----~-~~~~g~-~~~~~-~~~~~~~~~~~~~~~~~l 445 (507)
..+|.+ .++++.+.+++.|++.+|++.+.+.......+. . ....|+ |.... ..+....++..+++++||
T Consensus 383 ~~~~~~y~~-~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gL 461 (492)
T TIGR02733 383 SLDEEDYTA-KKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGL 461 (492)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCe
Confidence 122333 256688999999999999987765544332221 1 111221 11111 222212222336899999
Q ss_pred EEeeccccCcCCchhhHHHHHHHHHHHHHHH
Q 010542 446 FFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 476 (507)
Q Consensus 446 ~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~ 476 (507)
|+||+++.++ +++.|++.||+.+|+.|++
T Consensus 462 yl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 462 WLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred EEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 9999998774 5889999999999999875
No 25
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=238.16 Aligned_cols=325 Identities=20% Similarity=0.178 Sum_probs=225.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeeee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (507)
+.+|+|||+||+||+||+.|+.+|.+|+||||+.-+|||+.|.+..+..||.|+.+|.. .+..+.++++.+.-+
T Consensus 1 ~~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~--~~~~F~~~Ve~~~~~---- 74 (331)
T COG3380 1 MPSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKP--RDELFLRAVEALRDD---- 74 (331)
T ss_pred CCcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecC--CchHHHHHHHHHHhC----
Confidence 35799999999999999999999999999999999999999999999999999999962 333333333322111
Q ss_pred cCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH
Q 010542 108 SGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIV 187 (507)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (507)
T Consensus 75 -------------------------------------------------------------------------------- 74 (331)
T COG3380 75 -------------------------------------------------------------------------------- 74 (331)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccCccccccCCccccccchHHHHHHHhccCCcccCceeEEEE
Q 010542 188 FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKIT 267 (507)
Q Consensus 188 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~g~~i~~~~~V~~I~ 267 (507)
++-+.... ..|...-...+ ... ....+....||.+|.+.|+..++|.++++|++|.
T Consensus 75 ----------glV~~W~~-------~~~~~~~~~~~-~~~------d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~ 130 (331)
T COG3380 75 ----------GLVDVWTP-------AVWTFTGDGSP-PRG------DEDPYVGEPGMSALAKFLATDLTVVLETRVTEVA 130 (331)
T ss_pred ----------Cceeeccc-------cccccccCCCC-CCC------CCCccccCcchHHHHHHHhccchhhhhhhhhhhe
Confidence 00000000 00000000000 000 0011345679999999999999999999999999
Q ss_pred eeCCcEEEEEcCCc-EEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCCCCCCCccceeec
Q 010542 268 RHYIGVKVTVEGGK-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVS 346 (507)
Q Consensus 268 ~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~ 346 (507)
..++.|++++++|. ...+|.||+|+|.+.+..|+-.....+|..++..+..+.|.+...+.+.|..+.-. ++.|...
T Consensus 131 ~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~--P~~G~~v 208 (331)
T COG3380 131 RTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDR--PWPGNFV 208 (331)
T ss_pred ecCCeeEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCC--CCCCccc
Confidence 99999999997654 67999999999998877654333456888899999999999999889999865421 1223333
Q ss_pred CCCCceeeeecccc---CCCceEEEEEeccchhHHHhcCCHHHHHHHHHHHHHHhCC-CCCCCcEEEeccCCCCCCCCcc
Q 010542 347 DTSYGCSYFLNLHK---ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP-DASSPIQYLVSHWGTDANSLGS 422 (507)
Q Consensus 347 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~ee~~~~~~~~L~~~~p-~~~~~~~~~~~~w~~~~~~~g~ 422 (507)
+.....+.-.+..+ .+....+++....++++.+.+.++|..++.+....+.+.+ .+++|.....++|.. +.+.
T Consensus 209 dg~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~~~p~~s~~H~WrY---A~P~ 285 (331)
T COG3380 209 DGHPLAWLARDASKKGHVPDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRLPEPDWSDAHRWRY---AIPN 285 (331)
T ss_pred CCCeeeeeeccccCCCCCCcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCCCcchHHHhhcccc---cccc
Confidence 32222222222111 1223477888889999999999999988777777777775 577787777888953 2111
Q ss_pred cccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542 423 YSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477 (507)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~ 477 (507)
-....+ .....+-.+||+|||+++. |.+|||.+||..+|++|++.
T Consensus 286 ~~~~~~-------~L~ad~~~~l~~cGDwc~G---grVEgA~LSGlAaA~~i~~~ 330 (331)
T COG3380 286 DAVAGP-------PLDADRELPLYACGDWCAG---GRVEGAVLSGLAAADHILNG 330 (331)
T ss_pred ccccCC-------ccccCCCCceeeecccccC---cchhHHHhccHHHHHHHHhc
Confidence 110000 0011344699999999886 89999999999999999874
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=1.2e-30 Score=266.48 Aligned_cols=427 Identities=18% Similarity=0.165 Sum_probs=232.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCC---CCchHHHHHhcCCCee
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQ---ENPLAPVISRLGLPLY 105 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~---~~~~~~l~~~lg~~~~ 105 (507)
+||+|||||++||+||.+|+++|++|+||||++.+||+++++..+|+.+|.|++++.+... .+.+.+++..++....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 6899999999999999999999999999999999999999999999999999999865432 1234566776665432
Q ss_pred eecCCCc--ccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHH---HHHHHHHHHHHHHHHHhh-------c
Q 010542 106 RTSGDNS--VLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVT---KVGEAFESILKETDKVRE-------E 173 (507)
Q Consensus 106 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~ 173 (507)
....... +.+.++.. . .+..+...+...+.. ...+.+.++.+.+..... .
T Consensus 81 ~~~~~~~~~~~~~~g~~-----------------~-~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLN-----------------V-KVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELL 142 (493)
T ss_pred ccCCCccEEEECCCCee-----------------E-eeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 1111111 11111100 0 000000000000000 001112222222211100 0
Q ss_pred CCCC-CcHH-HHHH---------HHhccC-hhHHhhhhHHHHHHHHHHhhhccccCC-cccccccccC--ccccccCCcc
Q 010542 174 HDED-MSIQ-RAIS---------IVFDRR-PELRLEGLAHKVLQWYLCRMEGWFAAD-AETISLKSWD--KEELLPGGHG 238 (507)
Q Consensus 174 ~~~~-~~~~-~~~~---------~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~--~~~~~~~~~~ 238 (507)
.... ..+. .++. .+.... .......+.++.++.++......++.. ....+..... ......++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~g~~ 222 (493)
T TIGR02730 143 SLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFSDRHYGGIN 222 (493)
T ss_pred cccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhcccccceEe
Confidence 0000 0000 0000 000000 001112233444444444333333322 2333222111 1112345677
Q ss_pred ccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHH
Q 010542 239 LMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 312 (507)
Q Consensus 239 ~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~ 312 (507)
++.+|++.++++|.+ |++|+++++|++|..+++++ .|.+.+|+++.+|+||+|+++..+...++. ...+++..
T Consensus 223 ~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~~~~~~~~ 301 (493)
T TIGR02730 223 YPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLK-AENLPKKE 301 (493)
T ss_pred cCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCC-ccccchhh
Confidence 899999999998865 88999999999999887665 478888988999999999987554332221 12244444
Q ss_pred HHHHHHcCCc-ceeEEEEEccCCCCCCCcc-ceeecC------CCCcee--e----eeccccCCCceEEEEEeccchhHH
Q 010542 313 EAAIDDLGVG-IENKIIMHFDKVFWPNVEF-LGVVSD------TSYGCS--Y----FLNLHKATGHCVLVYMPAGQLARD 378 (507)
Q Consensus 313 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-~g~~~~------~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~~~ 378 (507)
.+.+..+++. ...++++..+....++... .-.+.. ...... . .++..+|+|+.++.+++.... ..
T Consensus 302 ~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~-~~ 380 (493)
T TIGR02730 302 KNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSM-ED 380 (493)
T ss_pred HHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCCh-hh
Confidence 4444555544 4567788887644332100 001100 001111 1 112234667777766654222 22
Q ss_pred Hh-------cCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCC-----CCCCcccccCCCCCchHHH--HHhcCCCCc
Q 010542 379 IE-------KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD-----ANSLGSYSYDTVGKSHDLY--ERLRIPVDN 444 (507)
Q Consensus 379 ~~-------~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~-----~~~~g~~~~~~~~~~~~~~--~~~~~~~~~ 444 (507)
|. +..++++.+.+++.|++++|++.+.+.+.....+.+ ....|.|............ +..+++++|
T Consensus 381 w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~g 460 (493)
T TIGR02730 381 WQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPG 460 (493)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCC
Confidence 21 112567899999999999999877655443322211 1112333211000000111 235789999
Q ss_pred eEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542 445 LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477 (507)
Q Consensus 445 l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~ 477 (507)
||+||+++.++ +++.||+.||+.||+.|++.
T Consensus 461 Lyl~G~~~~pG--~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 461 LYCVGDSCFPG--QGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred eEEecCcCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence 99999998774 58999999999999998764
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=2.4e-31 Score=273.20 Aligned_cols=421 Identities=17% Similarity=0.143 Sum_probs=230.9
Q ss_pred EEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe------
Q 010542 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL------ 104 (507)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~------ 104 (507)
|+|||||++||+||.+|+++|++|+|+|+++++||+++|+..+|+.+|.|++++.. ...+.++++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~---~~~~~~l~~~lg~~l~~~l~~ 77 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITM---PEALEELFALAGRDLADYVEL 77 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcc---ccHHHHHHHHcCCChhheEEE
Confidence 69999999999999999999999999999999999999999999999999999852 245678888888542
Q ss_pred eeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHH---HHHHHHHHHHHHHHHHhh----c--CC
Q 010542 105 YRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVT---KVGEAFESILKETDKVRE----E--HD 175 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~--~~ 175 (507)
.+......+.+.++... .+..+...+...+.. ...+.+.++++.+..... . ..
T Consensus 78 ~~~~~~~~~~~~~g~~~------------------~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (502)
T TIGR02734 78 VPLDPFYRLCWEDGSQL------------------DVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV 139 (502)
T ss_pred EECCCceEEECCCCCEE------------------EecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11111111112111000 000000000000000 001112222221111110 0 00
Q ss_pred CCCcHHHHHHH----HhccC-----hhHHhhhhHHHHHHHHHHhhhccccCCcccccccccC-ccccccCCccccccchH
Q 010542 176 EDMSIQRAISI----VFDRR-----PELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD-KEELLPGGHGLMVRGYL 245 (507)
Q Consensus 176 ~~~~~~~~~~~----~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~G~~ 245 (507)
...+..+.+.. .+... .......+.++.++.++.....+++.++...+..... ......++..++.+|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~~ 219 (502)
T TIGR02734 140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGNPFRTPSIYALISALEREWGVWFPRGGTG 219 (502)
T ss_pred CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccCcccchHHHHHHHHHHhhceEEEcCCCHH
Confidence 01111111110 00000 0001122344445555443344555665554433221 11223456668899999
Q ss_pred HHHHHHhc-----cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHc
Q 010542 246 PVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDL 319 (507)
Q Consensus 246 ~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~ 319 (507)
.++++|.+ |++|+++++|++|..++++ +.|++.+|+++.||+||+|+++..+...++. ....+....+.+..+
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 298 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLP-NHPRRRYPAARLSRK 298 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcC-ccccccccccccccC
Confidence 99999865 8899999999999988776 4588888888999999999998665432321 111222333444555
Q ss_pred CCc-ceeEEEEEcc---CCCCCCCcc-c-----------------eeecCCCCceeee----eccccCCCceEEEEEecc
Q 010542 320 GVG-IENKIIMHFD---KVFWPNVEF-L-----------------GVVSDTSYGCSYF----LNLHKATGHCVLVYMPAG 373 (507)
Q Consensus 320 ~~~-~~~~~~l~~~---~~~~~~~~~-~-----------------g~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 373 (507)
.+. ...++++.++ .. ++.... . |.+.......... ++..+|+|+..+.+++..
T Consensus 299 ~~s~s~~~~~lgl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~ 377 (502)
T TIGR02734 299 RPSPSLFVLYFGLLGVDGH-WPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPV 377 (502)
T ss_pred CcCCeeeEEEEeeccccCc-CCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeC
Confidence 533 4456677776 23 221100 0 0011111111111 122346676666544432
Q ss_pred ch----hHHHhcCCHHHHHHHHHHHHHHh-CCCCCCCcEEEeccC----CCC-CCCCcc-cccC-CCCCchHHHHH-hcC
Q 010542 374 QL----ARDIEKMSDEAAANFAFTQLKKI-LPDASSPIQYLVSHW----GTD-ANSLGS-YSYD-TVGKSHDLYER-LRI 440 (507)
Q Consensus 374 ~~----~~~~~~~~~ee~~~~~~~~L~~~-~p~~~~~~~~~~~~w----~~~-~~~~g~-~~~~-~~~~~~~~~~~-~~~ 440 (507)
.. ..+|.+ .++++.+.+++.|++. +|++.+.+....... ... ....|+ |... ...+....++. ..+
T Consensus 378 ~~~~~~~~~~~~-~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t 456 (502)
T TIGR02734 378 PHLGTADVDWSV-EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDR 456 (502)
T ss_pred CCCCCCCCCcHH-HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCC
Confidence 21 112332 3677999999999998 999877654433211 110 111121 1111 11111122232 357
Q ss_pred CCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542 441 PVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477 (507)
Q Consensus 441 ~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~ 477 (507)
+++|||+||+++.++ +++.|++.||+.||+.|++.
T Consensus 457 ~i~gLyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~ 491 (502)
T TIGR02734 457 KIDNLYLVGAGTHPG--AGVPGVLGSAKATAKLMLGD 491 (502)
T ss_pred CCCCEEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhh
Confidence 899999999998774 58999999999999998875
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=222.35 Aligned_cols=287 Identities=18% Similarity=0.164 Sum_probs=211.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEecc----CCCeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDY----SFGFPVDLGASWLHGVCQENPLAPVISRLG 101 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~----~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (507)
...++|+|||+|++||+|||.|++. ++|++||+++++||+++|.. ..|+.+|.|.+.++.. .++++.+|++++|
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~-tYpnl~~Lf~~iG 83 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNER-TYPNLTRLFKTIG 83 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCC-CcchHHHHHHHcC
Confidence 4678999999999999999999987 89999999999999999984 3477899999888742 5778999999999
Q ss_pred CCeeeecCCCcccccc-cchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcH
Q 010542 102 LPLYRTSGDNSVLYDH-DLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSI 180 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (507)
++.....++..+-.+. ++++ ........++....+.+.+.+..++.+.+.-........+.....+.++
T Consensus 84 v~t~as~Msf~v~~d~gglEy----------~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl 153 (447)
T COG2907 84 VDTKASFMSFSVSLDMGGLEY----------SGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTL 153 (447)
T ss_pred CCCcccceeEEEEecCCceee----------ccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccH
Confidence 9977776666655543 2222 1111123466666667777777766655433322222333445567888
Q ss_pred HHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc-----------cccccCCccccccchHHHH
Q 010542 181 QRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK-----------EELLPGGHGLMVRGYLPVI 248 (507)
Q Consensus 181 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-----------~~~~~~~~~~~~~G~~~l~ 248 (507)
.+|+. ..+++..+.+.++.|+ .+.++.+...++...... .......+.++.||....+
T Consensus 154 ~~~L~----------~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yv 223 (447)
T COG2907 154 AQYLK----------QRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYV 223 (447)
T ss_pred HHHHH----------hcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHH
Confidence 88865 4689999999998887 456666655555333210 1111223557889999999
Q ss_pred HHHhccCC--cccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeE
Q 010542 249 NTLAKGLD--IRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENK 326 (507)
Q Consensus 249 ~~l~~g~~--i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~ 326 (507)
+.|.+++. |.++++|.+|..--+++.++..+|++.++|.||+|+.+.....++ ++-+++.++.+..+.| +.+.
T Consensus 224 q~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~mL----~e~sp~e~qll~a~~Y-s~n~ 298 (447)
T COG2907 224 QRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALALL----DEPSPEERQLLGALRY-SANT 298 (447)
T ss_pred HHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHHHhc----CCCCHHHHHHHHhhhh-hhce
Confidence 99999874 999999999999999999988899999999999999988765443 3345666779999999 4555
Q ss_pred EEEEccCCCCCCC
Q 010542 327 IIMHFDKVFWPNV 339 (507)
Q Consensus 327 ~~l~~~~~~~~~~ 339 (507)
..++.|.+++|..
T Consensus 299 aVlhtd~~lmPrR 311 (447)
T COG2907 299 AVLHTDASLMPRR 311 (447)
T ss_pred eEEeecccccccc
Confidence 6788888777754
No 29
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.96 E-value=1.2e-27 Score=221.85 Aligned_cols=401 Identities=20% Similarity=0.228 Sum_probs=259.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCe--EEEEecCCCCCceeEe-ccCCCeeeecCCceeeCCCC-CCchHHHHHhcC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFK--VVLLESRDRVGGRVHT-DYSFGFPVDLGASWLHGVCQ-ENPLAPVISRLG 101 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~--V~vlE~~~~~GG~~~s-~~~~g~~~d~G~~~~~~~~~-~~~~~~l~~~lg 101 (507)
...++|+|||||++||++||+|++.+.+ |+|+|+.+|+||+++| ...+|+.||.|+..+.+... .-.+.+++.++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 4679999999999999999999999764 6679999999999999 55569999999998875432 235789999999
Q ss_pred CCeeee--cC-----CCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHH--------HHHHHHHHHHHH
Q 010542 102 LPLYRT--SG-----DNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVT--------KVGEAFESILKE 166 (507)
Q Consensus 102 ~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 166 (507)
++.... .. .+.+++..+ ....+|..+.. .....+..++..
T Consensus 89 l~~e~~~i~~~~paaknr~l~~~~-------------------------~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e 143 (491)
T KOG1276|consen 89 LEDELQPIDISHPAAKNRFLYVPG-------------------------KLPTVPSSLVGSLKFSLQPFGKPLLEAFLRE 143 (491)
T ss_pred ccceeeecCCCChhhhheeeccCc-------------------------ccccCCcccccccccccCcccchhHHHHHhh
Confidence 963321 11 111222211 11111111110 112223344443
Q ss_pred HHHHh-hcCCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCcc-cc---ccC-----
Q 010542 167 TDKVR-EEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDKE-EL---LPG----- 235 (507)
Q Consensus 167 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~-~~---~~~----- 235 (507)
..+-. .....++|+++|++ ++|++++.+.++.++ ++.|+.+++.+|++..... +. ..|
T Consensus 144 ~fr~~~~~~~~dESV~sF~~-----------RrfG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G 212 (491)
T KOG1276|consen 144 LFRKKVSDPSADESVESFAR-----------RRFGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILG 212 (491)
T ss_pred hccccCCCCCccccHHHHHH-----------HhhhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHH
Confidence 33322 34567889998877 568899999999997 6799999999998854310 00 000
Q ss_pred ---------------------------CccccccchHHHHHHHhcc-----CCcccCceeEEEEee-CCcEEEEEcC--C
Q 010542 236 ---------------------------GHGLMVRGYLPVINTLAKG-----LDIRLGHRVTKITRH-YIGVKVTVEG--G 280 (507)
Q Consensus 236 ---------------------------~~~~~~~G~~~l~~~l~~g-----~~i~~~~~V~~I~~~-~~~v~v~~~~--g 280 (507)
..+..++|++.+.+++.++ +.|.+.-++..+... .++|.+++.+ +
T Consensus 213 ~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~ 292 (491)
T KOG1276|consen 213 TIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSG 292 (491)
T ss_pred HHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCC
Confidence 0224678899999999774 357778888888765 4557766554 4
Q ss_pred c-EEEcCEEEEecCchhhccCcccccCCCcHHHHHHHHHcCCcceeEEEEEccCC-CCCCCccceeecCC--CCc----e
Q 010542 281 K-TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKV-FWPNVEFLGVVSDT--SYG----C 352 (507)
Q Consensus 281 ~-~~~ad~VI~a~p~~~~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~--~~~----~ 352 (507)
. .+..+++.+|.|+..+..++ +.+.+....++..++|.++..|.+.|.+. ...+...+|++.+. ... -
T Consensus 293 ~~~~~~~~~~~t~~~~k~a~ll----~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG 368 (491)
T KOG1276|consen 293 TQRVVVSYDAATLPAVKLAKLL----RGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLG 368 (491)
T ss_pred ceeeeccccccccchHHhhhhc----cccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeE
Confidence 3 45566677799988877653 44556667889999999999999999763 32233445776652 111 1
Q ss_pred eeeecccc--CCCceEEEEEeccchhHH--HhcCCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCC
Q 010542 353 SYFLNLHK--ATGHCVLVYMPAGQLARD--IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 428 (507)
Q Consensus 353 ~~~~~~~~--~~~~~~l~~~~~~~~~~~--~~~~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~ 428 (507)
..|+.... ..+...+++++.+..... ....|.||+++.+.++|+++++.-.+|....++.|.. +.+.| ..
T Consensus 369 ~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~~P~~~~v~l~~~---ciPqy---~v 442 (491)
T KOG1276|consen 369 TIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISNKPVSVNVHLWKN---CIPQY---TV 442 (491)
T ss_pred EEeecccCCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCCCcccccceehhh---cccce---ec
Confidence 22332211 122335666655544333 2345899999999999999997655666555566642 12222 34
Q ss_pred CCc--hHHHHHhcCCC--CceEEeeccccCcCCchhhHHHHHHHHHHHHHH
Q 010542 429 GKS--HDLYERLRIPV--DNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCR 475 (507)
Q Consensus 429 ~~~--~~~~~~~~~~~--~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~ 475 (507)
|+. .+....+.+.. .+|+++|.++.. -.+..++.||+++|.++.
T Consensus 443 Gh~~~le~a~~~l~~~~g~~l~l~G~~y~G---v~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 443 GHDDVLEAAKSMLTDSPGLGLFLGGNHYGG---VSVGDCIESGRKTAVEVI 490 (491)
T ss_pred chHHHHHHHHHHHHhCCCCceEeeccccCC---CChhHHHHhhHHHHHhhc
Confidence 442 12222233333 599999999875 578889999999998764
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=4.1e-27 Score=238.36 Aligned_cols=248 Identities=27% Similarity=0.268 Sum_probs=142.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcC-CCee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (507)
+.+||||||||++||+||.+|+++|++|+||||++++||+++|....|+.||+|++++... ....++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~----~~~~~~~~l~~l~~~ 77 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMP----DPGPLFRELGNLDAD 77 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceeecC----chHHHHHHhccCccc
Confidence 5799999999999999999999999999999999999999999999999999999877533 2336666666 4422
Q ss_pred -----eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHH---HHHHHHHHHHHHHHHH----Hhhc
Q 010542 106 -----RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELV---TKVGEAFESILKETDK----VREE 173 (507)
Q Consensus 106 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~ 173 (507)
.........+.++.. .....+.......+. ....+.+.+++....+ ....
T Consensus 78 ~l~~~~~~~~~~~~~~~g~~------------------~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (487)
T COG1233 78 GLDLLPPDPAYRVFLPDGDA------------------IDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAAL 139 (487)
T ss_pred ceeeeccCCceeeecCCCCE------------------EEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence 111111111111100 000000000000000 0001111222211111 1111
Q ss_pred CC----C-----CCcHHHHHHH---HhccChhHHhhhhHHHHHHHHHHhhhccccCCccccc-ccccCccccccCCcccc
Q 010542 174 HD----E-----DMSIQRAISI---VFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETIS-LKSWDKEELLPGGHGLM 240 (507)
Q Consensus 174 ~~----~-----~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~ 240 (507)
.. . ......++.. .+..........|..+.++..+.....+.+..+...+ +..+.......++..++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~~~p~~~~a~~~~~~~~~~~~G~~~p 219 (487)
T COG1233 140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGLSGGVFYP 219 (487)
T ss_pred cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCchhHHHHHHHHhcccCCeeee
Confidence 00 0 1111122111 1111111111225555555444432111113333333 22222344456778899
Q ss_pred ccchHHHHHHHhc-----cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCchh
Q 010542 241 VRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 241 ~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
+|||+.++++|.+ |++|+++++|++|..++++ +++++.+|+.+.+|.||+++.+..
T Consensus 220 ~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~ 281 (487)
T COG1233 220 RGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPAL 281 (487)
T ss_pred eCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhh
Confidence 9999999999976 9999999999999998875 668888887889999999998843
No 31
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.3e-22 Score=196.32 Aligned_cols=437 Identities=18% Similarity=0.095 Sum_probs=222.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC-CCeeeecCCceeeCCCCCCchHHHHHhcCCCeeee
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS-FGFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT 107 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~ 107 (507)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.|.+. +|.+.|+|.|.|.++ +.++++++++++......
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~--Y~n~~~ll~~~~~~~~~~ 78 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGC--YYNLLTLLKELPIEDRLQ 78 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechh--HHHHHHHhhhCCchheee
Confidence 47999999999999999999999999999999999999999664 689999999999854 568999999998863211
Q ss_pred cCCCccccc--ccchh--hhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHH-H-HHHhhcCCCCCcHH
Q 010542 108 SGDNSVLYD--HDLES--RVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKE-T-DKVREEHDEDMSIQ 181 (507)
Q Consensus 108 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 181 (507)
.......+. .+... .-+..+. -+.+.+.....+. ...++.. .......++... + ........++.++.
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~--~~~~~~~---~~~~~~~~l~~~~~g~~~~~~eld~~s~~ 152 (485)
T COG3349 79 LREHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLR--LPQLPRR---EKIRFVLRLGDAPIGADRSLRELDKISFA 152 (485)
T ss_pred hHhhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhh--ccccCHH---HHhHHhhccccccchhHHHHHHHhcccHH
Confidence 111111110 00000 0000000 0000000000000 0011111 001111111111 1 11112345667888
Q ss_pred HHHHHHhccChhHHhhhhHHHHHHHHHHhhh-ccccCCcccccccccCc----ccccc-CC--ccccccc-----hHHHH
Q 010542 182 RAISIVFDRRPELRLEGLAHKVLQWYLCRME-GWFAADAETISLKSWDK----EELLP-GG--HGLMVRG-----YLPVI 248 (507)
Q Consensus 182 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~----~~~~~-~~--~~~~~~G-----~~~l~ 248 (507)
+|++..- .........+.++. ......++..|...+.. ..... ++ ...+.++ .+.+.
T Consensus 153 d~l~~~g----------~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~ 222 (485)
T COG3349 153 DWLKEKG----------AREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWT 222 (485)
T ss_pred HHHHHhC----------CCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhh
Confidence 8877532 22222222233321 11223334444433220 00000 00 1112222 23445
Q ss_pred HHHh-ccCCcccCceeEEEEeeCC-----cEEEEEcCCcEE---EcCEEEEecCchhhccCcccccCCCc-HHHHHHHHH
Q 010542 249 NTLA-KGLDIRLGHRVTKITRHYI-----GVKVTVEGGKTF---VADAVVVAVPLGVLKARTIKFEPRLP-DWKEAAIDD 318 (507)
Q Consensus 249 ~~l~-~g~~i~~~~~V~~I~~~~~-----~v~v~~~~g~~~---~ad~VI~a~p~~~~~~l~~~~~p~l~-~~~~~~~~~ 318 (507)
+.+- .|.+++.+.+|+.|..... .+.+... +... .++.|+.+.....+...+. .+.+ ......+..
T Consensus 223 ~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~p---s~W~~~~~f~~ly~ 298 (485)
T COG3349 223 EYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLP---SEWPKWSNFDGLYG 298 (485)
T ss_pred hhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCc---cccccccccccccc
Confidence 5555 3889999999999987652 2233333 4333 4445555555544433211 1111 222344566
Q ss_pred cCCcceeEEEEEccCCCCCCCccc--eeec-----CCCCceeeeec------cccCCCceEEEEEeccchhHHHhcCCHH
Q 010542 319 LGVGIENKIIMHFDKVFWPNVEFL--GVVS-----DTSYGCSYFLN------LHKATGHCVLVYMPAGQLARDIEKMSDE 385 (507)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~--g~~~-----~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~e 385 (507)
++..+..++.+.|+...|.-.... +.+. .......++.. ...+.....+-.... ....+...+++
T Consensus 299 l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~--~~~~~~~~~~~ 376 (485)
T COG3349 299 LRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLA--PGWPFLFESDE 376 (485)
T ss_pred ccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhc--ccccccccchh
Confidence 677788888898885333211100 0010 00000001000 000110011100000 11234556788
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEeccCCCCCCCCcccccCCCCCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHH
Q 010542 386 AAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFS 465 (507)
Q Consensus 386 e~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~ 465 (507)
++.....+.+...+|...+-. .|.+.-....+.....||.. ..+|...+|++|++++||+.-..+.++||+|..
T Consensus 377 ~~~a~~e~~~~~~vP~~~~a~-----~~~~~i~~~q~~~~~~pgs~-~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~~ 450 (485)
T COG3349 377 AIVATFEKELYELVPSLAEAK-----LKSSVLVNQQSLYGLAPGSY-HYRPEQKTPIPNLLLAGDYTKQPYLGSMEGATL 450 (485)
T ss_pred hHHHHHHHHhhhcCCchhccc-----ccccceeccccccccCCCcc-ccCCCCCCCccchhhccceeecCCcCccchhhh
Confidence 899999999998887644322 11111111111222223332 566777789999999999998878889999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccccccCCC
Q 010542 466 TGLMAAEDCRMRVLERYGELDLFQPVMGEE 495 (507)
Q Consensus 466 SG~~aA~~i~~~l~~~~~~~~~~~~~~~~~ 495 (507)
||++||+.|+..+...-+........+.+.
T Consensus 451 sGl~AA~~v~~~~~~~~~~~~~~~~~~~~~ 480 (485)
T COG3349 451 SGLLAANAILDNLGHHAPLDRRDLSDPAPF 480 (485)
T ss_pred hHHHHHHHHHHhhhhcCccccccccCcCch
Confidence 999999999988765555333344444433
No 32
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=182.76 Aligned_cols=236 Identities=19% Similarity=0.142 Sum_probs=139.3
Q ss_pred ccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhhc-cCccccc
Q 010542 233 LPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVLK-ARTIKFE 305 (507)
Q Consensus 233 ~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~~-~l~~~~~ 305 (507)
..|++.++.|||..+.+++++ |.+|.+++.|++|..+++++. |.++||.+++++.||+++.++.+. .++. .
T Consensus 252 ~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp--~ 329 (561)
T KOG4254|consen 252 HKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP--G 329 (561)
T ss_pred cCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC--C
Confidence 457788999999999999975 779999999999999987765 899999999999999999876543 3321 2
Q ss_pred CCCcHHHHHHHHHcCCc-ce----eEEEEEccCC-C--CCCCcc--------------------ceeecCCC----Ccee
Q 010542 306 PRLPDWKEAAIDDLGVG-IE----NKIIMHFDKV-F--WPNVEF--------------------LGVVSDTS----YGCS 353 (507)
Q Consensus 306 p~l~~~~~~~~~~~~~~-~~----~~~~l~~~~~-~--~~~~~~--------------------~g~~~~~~----~~~~ 353 (507)
..||++. .++++.+. +. +..++..... - .|.... .|.-.... .+.+
T Consensus 330 e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS 407 (561)
T KOG4254|consen 330 EALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPS 407 (561)
T ss_pred ccCCchh--hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccc
Confidence 2355554 33333221 11 1123332100 0 011000 01000000 0111
Q ss_pred eeeccccCCCceEEEEEeccchhHHHhc-------CCHHHHHHHHHHHHHHhCCCCCCCcEEEeccCCCC--CC---CCc
Q 010542 354 YFLNLHKATGHCVLVYMPAGQLARDIEK-------MSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTD--AN---SLG 421 (507)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~ee~~~~~~~~L~~~~p~~~~~~~~~~~~w~~~--~~---~~g 421 (507)
..++.-.|++++++..++.+.. ..|.+ .-+++..+++++.+++++|++...+.......+-+ .+ ..|
T Consensus 408 ~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsssv~~~dvgTP~t~qr~l~~~~G 486 (561)
T KOG4254|consen 408 SLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSSVESYDVGTPPTHQRFLGRPGG 486 (561)
T ss_pred ccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHHHHcCCccceEEEEecCCCchhhHHhcCCCC
Confidence 2223334677888777665443 23332 23577889999999999999887655444333211 00 122
Q ss_pred ccccCCC-------CCchHHHHHhcCCCCceEEeeccccCcCCchhhHHHHHHHHHHHHHHHH
Q 010542 422 SYSYDTV-------GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 477 (507)
Q Consensus 422 ~~~~~~~-------~~~~~~~~~~~~~~~~l~~aG~~~~~~~~g~~egA~~SG~~aA~~i~~~ 477 (507)
.+..... ......+..+++|++|||+||+.+.++ |++-+|- |..+|...+..
T Consensus 487 n~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPG--gGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 487 NIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPG--GGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred cccCcccccccccccCCccccccCCCCCCceEEecCCCCCC--CCccccc--hhHHHHHHhhh
Confidence 2211001 111122334689999999999999886 5665543 88888876554
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.80 E-value=1.4e-17 Score=161.08 Aligned_cols=235 Identities=17% Similarity=0.183 Sum_probs=142.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCee-eecCCceeeCCCCCCchHHHHHhcC-CCee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLG-LPLY 105 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg-~~~~ 105 (507)
++||+|||||++||++|++|++.|.+|+|+|+++++||.|.+....|.. .+.|+|+++. ....+.+++.++- ....
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t--~~~~v~~~~~~~~~~~~~ 78 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHT--NNQYVWDYISPFFELNNY 78 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEec--CcHHHHHHHHhhccccce
Confidence 4799999999999999999999999999999999999999887666654 4899999873 4445666666542 1111
Q ss_pred eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHH
Q 010542 106 RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAIS 185 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (507)
. .+....+.+.... ++.+...+..-......+....++...... .......+++++..
T Consensus 79 ~--~~~~~~~~g~~~~-------------------~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~e~~d 136 (377)
T TIGR00031 79 Q--HRVLALYNNLDLT-------------------LPFNFNQFRKLLGVKDAQELQNFFNAQFKY-GDHVPLEELQEIAD 136 (377)
T ss_pred e--EEEEEEECCeEEc-------------------cCCCHHHHHHhcccchHHHHHHHHHHHhhc-ccCCCCCCHHHHHH
Confidence 0 1111111111100 000000000000000111111111111110 01111245666653
Q ss_pred HHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc---------cccccCCccccccchHHHHHHHhc--
Q 010542 186 IVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK---------EELLPGGHGLMVRGYLPVINTLAK-- 253 (507)
Q Consensus 186 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~---------~~~~~~~~~~~~~G~~~l~~~l~~-- 253 (507)
.. ...+++.+.+.++.+. ...|+.++++++..+... .+....-.++|++|+..+.+.|.+
T Consensus 137 ~~--------~~~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~ 208 (377)
T TIGR00031 137 PD--------IQLLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHP 208 (377)
T ss_pred HH--------HHHHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcC
Confidence 21 2458888999988886 558999999998775431 111222346799999999999986
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~ 298 (507)
+++|++|+.+..++.+++++.+. .+ .+. +.||.|.|++.+-
T Consensus 209 ~i~v~l~~~~~~~~~~~~~~~~~--~~-~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 209 LIDVKLNCHINLLKDKDSQLHFA--NK-AIR-KPVIYTGLIDQLF 249 (377)
T ss_pred CCEEEeCCccceeeccccceeec--cc-ccc-CcEEEecCchHHH
Confidence 59999999888888665556543 22 333 8899999888753
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.74 E-value=9.7e-17 Score=159.00 Aligned_cols=239 Identities=15% Similarity=0.146 Sum_probs=135.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC--------------------CeeeecCCceee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF--------------------GFPVDLGASWLH 85 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~--------------------g~~~d~G~~~~~ 85 (507)
.+.+||+|||+|++|+.+|..|+++|++|+++|+++.+||+.+|.... .+.+|+.++.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 567999999999999999999999999999999999999999986322 233555566553
Q ss_pred CCCCCCchHHHHHhcCCCeeee--cCCCcccc-cccchhhhhhhhhhHHhhhcccceeecCCCCccCHHHHHHHHHHHHH
Q 010542 86 GVCQENPLAPVISRLGLPLYRT--SGDNSVLY-DHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 162 (507)
Q Consensus 86 ~~~~~~~~~~l~~~lg~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (507)
....+.+++.+.++...-. ......++ .++... + .+......+...... +. .+..+.+
T Consensus 82 ---~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~---~------vP~s~~~~~~s~ll~-----l~--eKr~l~k 142 (443)
T PTZ00363 82 ---ASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIH---K------VPATDMEALSSPLMG-----FF--EKNRCKN 142 (443)
T ss_pred ---cCChHHHHHhhcCccceeeeEEeceEEEEecCCeEE---E------CCCCHHHHhhCCCcc-----hh--hHHHHHH
Confidence 3456778888887763211 11111121 111000 0 000000000000000 00 1122334
Q ss_pred HHHHHHHHhhcC--------CCCCcHHHHHHHHhccChhHHhhhhHHHHHH---HHHHhh-hccccCCccccccccc---
Q 010542 163 ILKETDKVREEH--------DEDMSIQRAISIVFDRRPELRLEGLAHKVLQ---WYLCRM-EGWFAADAETISLKSW--- 227 (507)
Q Consensus 163 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~s~~~~--- 227 (507)
|+..+....... .+..++.++++.+ ++++...+ +++... ...+...+...++..+
T Consensus 143 fl~~v~~~~~~~~~~~~~~~~d~~T~~d~L~~~----------~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y 212 (443)
T PTZ00363 143 FLQYVSNYDENDPETHKGLNLKTMTMAQLYKKF----------GLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLY 212 (443)
T ss_pred HHHHHHhhccCChhhhcccCcccCCHHHHHHHh----------CCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHH
Confidence 444443322211 2356777876543 34444443 222221 1112221111111111
Q ss_pred Cc--cccccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecC
Q 010542 228 DK--EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVP 293 (507)
Q Consensus 228 ~~--~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p 293 (507)
.. ..+......++.+|++.+.++|.+ |++++++++|++|..++++ +.|++++|++++|+.||+..+
T Consensus 213 ~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 213 MDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 00 001112335678999999999963 8899999999999887543 458888999999999998554
No 35
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.70 E-value=2.6e-17 Score=118.17 Aligned_cols=68 Identities=35% Similarity=0.572 Sum_probs=60.3
Q ss_pred EECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhc
Q 010542 33 VIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100 (507)
Q Consensus 33 IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~l 100 (507)
|||||++||+||++|+++|++|+|||+++++||++++...+|+.+|.|++++.....++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 89999999999999999999999999999999999999889999999999997654556788888875
No 36
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.69 E-value=8.4e-15 Score=146.43 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=61.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEecc--CCCeeeecCCceeeCCCCCCchHHHHH
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDY--SFGFPVDLGASWLHGVCQENPLAPVIS 98 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~l~~ 98 (507)
..++.+|+|||||++||+||++|+++ |.+|+|||+++.+||++.+.. ..|+.++.|.+. . .....++++++
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~--~~y~~l~~ll~ 95 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-E--NHFECLWDLFR 95 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-c--chHHHHHHHHH
Confidence 34568999999999999999999996 679999999999999998744 568999888663 2 34567888887
Q ss_pred hcC
Q 010542 99 RLG 101 (507)
Q Consensus 99 ~lg 101 (507)
.++
T Consensus 96 ~ip 98 (576)
T PRK13977 96 SIP 98 (576)
T ss_pred hcc
Confidence 763
No 37
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.52 E-value=2.6e-13 Score=133.82 Aligned_cols=42 Identities=36% Similarity=0.380 Sum_probs=36.5
Q ss_pred cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchh
Q 010542 254 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
|++|+.+++|++|..++++|+ |.+.+|+ +.+|+||+|+++..
T Consensus 161 Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp T-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 899999999999999999998 9999995 99999999998765
No 38
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.50 E-value=4.5e-12 Score=125.94 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=41.3
Q ss_pred HHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.+.+.+. .|++++++++|++|..+++++.|++++| ++.+|.||+|++...
T Consensus 154 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 154 AHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 3444333 4899999999999999888888888888 899999999999764
No 39
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.48 E-value=1.4e-12 Score=122.58 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=47.3
Q ss_pred ccc-cchHHHHHHHhc-----cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecC
Q 010542 239 LMV-RGYLPVINTLAK-----GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVP 293 (507)
Q Consensus 239 ~~~-~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p 293 (507)
++. ...++++++|.+ |++|+++++|.+|..++....+++.+|++++||.+|+|++
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence 344 566677777743 9999999999999999988999999998999999999996
No 40
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.48 E-value=1.4e-11 Score=122.53 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=40.4
Q ss_pred HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
+.+.+.+. .|++++.+++|++|..+++++.|++.++ ++.+|+||+|++..
T Consensus 149 ~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 149 RALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcc
Confidence 34444333 3889999999999999888888888777 89999999999864
No 41
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=8.1e-13 Score=119.44 Aligned_cols=219 Identities=15% Similarity=0.281 Sum_probs=132.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC--CCee-eecCCceeeCCCCCCchHHHHHhcCC-C
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS--FGFP-VDLGASWLHGVCQENPLAPVISRLGL-P 103 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~--~g~~-~d~G~~~~~~~~~~~~~~~l~~~lg~-~ 103 (507)
++|++|||||++|+..|..|++.|++|+|+||.+++||.|.+..- .|.. .-.|+|.|+ .++..+++.+..+-- .
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFH--T~~~~Vwdyv~~F~e~~ 78 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFH--TDNKRVWDYVNQFTEFN 78 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceee--cCchHHHHHHhhhhhhh
Confidence 589999999999999999999999999999999999999998665 4664 448999998 356677777665421 1
Q ss_pred eeeecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHH--HHH-HH-----HHHHHHHHHHHHHhhcCC
Q 010542 104 LYRTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL--VTK-VG-----EAFESILKETDKVREEHD 175 (507)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-----~~~~~~~~~~~~~~~~~~ 175 (507)
.... + ...+.+.....+|-.+ +.. +. .....+...... .....
T Consensus 79 ~Y~h--r--------------------------Vla~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~~~i~~~~~-~~~~~ 129 (374)
T COG0562 79 PYQH--R--------------------------VLALVNGQLYPLPFNLNTINQLFGKNFTPDEARKFIEEQAA-EIDIA 129 (374)
T ss_pred hhcc--c--------------------------eeEEECCeeeeccccHHHHHHHhCccCCHHHHHHHHHHhhc-ccccc
Confidence 0000 0 0011111111111111 000 00 111122222110 11111
Q ss_pred CCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhh-hccccCCcccccccccC---------ccccccCCccccccchH
Q 010542 176 EDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWD---------KEELLPGGHGLMVRGYL 245 (507)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~---------~~~~~~~~~~~~~~G~~ 245 (507)
+..++++-. -.-+++.+.+.++.+. ..-|+.+++++.+.... ..+.-..-.+.+++|+-
T Consensus 130 ~~q~~ee~a-----------is~vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT 198 (374)
T COG0562 130 EPQNLEEQA-----------ISLVGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYT 198 (374)
T ss_pred chhhhhhHH-----------HHHHHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHH
Confidence 122222221 1335667777777665 45788888888766543 11222223568999999
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~ 298 (507)
.+.+.|.+ .++|++||.-..+..... .+.+..||.|-|.+.+-
T Consensus 199 ~~~~kMl~hp~I~V~Lntd~~~~~~~~~----------~~~~~~VvytG~iD~~F 243 (374)
T COG0562 199 AMFEKMLDHPNIDVRLNTDFFDVKDQLR----------AIPFAPVVYTGPIDAYF 243 (374)
T ss_pred HHHHHHhcCCCceEEecCcHHHHhhhhc----------ccCCCceEEecchHhhh
Confidence 99999987 899999998776654332 14456899999888754
No 42
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.48 E-value=1e-11 Score=123.65 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=39.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
+++||+|||||+||++||+.|+++|++|+|+|++..+|-...+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 6799999999999999999999999999999999988876533
No 43
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.47 E-value=3.3e-11 Score=120.99 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
++||+|||||++|+++|++|+++|++|+|+|+++.+|+.+
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 3699999999999999999999999999999987665433
No 44
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.46 E-value=2.3e-11 Score=121.33 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=42.2
Q ss_pred HHHHHHhc-c-CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|.+.+.+ | ++++++++|++|+.+++++.+++++|+++.+|.||.|.+...
T Consensus 111 ~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 111 ALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 34454443 5 799999999999998888999989998999999999988654
No 45
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.46 E-value=3.3e-11 Score=120.22 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 247 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 247 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
|.+++.+ |++++++++|+++..+++++.|++++|+++.+|.||.|.+...
T Consensus 119 L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 119 LWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 3344433 8899999999999998888989888888999999999998754
No 46
>PRK09126 hypothetical protein; Provisional
Probab=99.44 E-value=2.3e-11 Score=121.46 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=42.2
Q ss_pred HHHHHh--ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 247 VINTLA--KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 247 l~~~l~--~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
+.+.+. .|++|+++++|++++.+++.+.|++++|+++++|.||.|.+...
T Consensus 116 l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 116 AYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc
Confidence 445554 38899999999999988888888888898999999999998754
No 47
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.44 E-value=6.8e-12 Score=125.91 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=36.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
+++||+|||||++|++||+.|+++|++|+|+|+.+.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999998877654
No 48
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2e-12 Score=110.71 Aligned_cols=69 Identities=25% Similarity=0.458 Sum_probs=55.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPL 104 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~ 104 (507)
....||+|||||.|||+|||+|+++|.+|+|||++-.+||-++- |++.|+..--+.+..++++++|++.
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~----------GGmlf~~iVv~~~a~~iL~e~gI~y 96 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG----------GGMLFNKIVVREEADEILDEFGIRY 96 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc----------cccccceeeecchHHHHHHHhCCcc
Confidence 35689999999999999999999999999999999999996532 4555543334556788888888873
No 49
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.43 E-value=3.7e-12 Score=129.32 Aligned_cols=51 Identities=20% Similarity=0.158 Sum_probs=39.7
Q ss_pred hHHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
...+.+++. .|++|+.+++|++|+. ++.+.|++.+| ++.||+||+|+....
T Consensus 186 ~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 186 VRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccc
Confidence 345555443 4999999999999985 45577888878 799999999998653
No 50
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.42 E-value=7.6e-11 Score=118.72 Aligned_cols=39 Identities=26% Similarity=0.555 Sum_probs=35.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
....+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 345799999999999999999999999999999998754
No 51
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.40 E-value=1e-12 Score=129.12 Aligned_cols=41 Identities=32% Similarity=0.491 Sum_probs=30.1
Q ss_pred cCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCc
Q 010542 254 GLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPL 294 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~ 294 (507)
|++|+++++|.+|..++++ +.|++++++++.||+||+|++-
T Consensus 123 gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 123 GVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGG 164 (409)
T ss_dssp T-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----
T ss_pred CCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCC
Confidence 9999999999999998887 7788867779999999999863
No 52
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.39 E-value=2.1e-10 Score=115.04 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=43.2
Q ss_pred HHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 246 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 246 ~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
.|.+.+.+ |++++.+++|++++.+++++.|++.+|+++++|.||.|.+.+..
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 34444443 78999999999999988889998889989999999999987553
No 53
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.38 E-value=3.8e-12 Score=123.71 Aligned_cols=43 Identities=33% Similarity=0.505 Sum_probs=39.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCceeEe
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~~~s 69 (507)
+++||+||||||.|+++|+.|++.+ ++|+|+||.+.+|-...+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 5799999999999999999999997 999999999999877655
No 54
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.38 E-value=2.2e-10 Score=114.06 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=42.9
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|.+.+.+ |++++++++|++|..++++++|++.+|+++.||.||.|.+.+.
T Consensus 110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 34455554 7899999999999988888989888888899999999999764
No 55
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.38 E-value=1.9e-10 Score=114.69 Aligned_cols=50 Identities=20% Similarity=0.084 Sum_probs=40.4
Q ss_pred HHHHHHhc-c-CCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLAK-G-LDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~~-g-~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|.+.+.+ | ++++ +++|+++..+++.+.|++.+|.++.+|.||.|.+...
T Consensus 116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 116 ALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 34455543 5 7788 9999999988888889988888899999999998753
No 56
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.37 E-value=3.7e-10 Score=113.77 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=34.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+||+|||||++||++|++|+++|++|+|+|+...+|..+
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~a 39 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALET 39 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhh
Confidence 489999999999999999999999999999976565544
No 57
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.36 E-value=2.7e-10 Score=114.30 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=41.9
Q ss_pred HHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 247 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 247 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
|.+.+.+ |++++++++|++++.+++++.|++.+|+++.+|.||.|.+...
T Consensus 117 L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 117 LRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence 4444433 8899999999999998888989888898999999999998653
No 58
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.36 E-value=3.6e-10 Score=113.09 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=42.4
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.+.+.+.+ |++++++++|+++..+++++.|++.+|.++.+|.||.|.+...
T Consensus 117 ~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 117 RLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 34454543 7899999999999988888999988888899999999998754
No 59
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.35 E-value=1.9e-10 Score=114.24 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=43.4
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEc-CCcEEEcCEEEEecCchhhc
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVE-GGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~ad~VI~a~p~~~~~ 298 (507)
.|.+++.+ +++++.+++|+.++.+++.+.+++. +|++++||.||-|-+.+...
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 109 ALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHH
Confidence 34455543 3799999999999999999888888 99999999999999876543
No 60
>PRK10015 oxidoreductase; Provisional
Probab=99.34 E-value=1.2e-10 Score=116.91 Aligned_cols=39 Identities=36% Similarity=0.543 Sum_probs=35.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
.++||+|||||++|++||+.|+++|++|+|+|+...+|-
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~ 42 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGC 42 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCc
Confidence 469999999999999999999999999999999877653
No 61
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.34 E-value=1.3e-10 Score=115.91 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=35.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (507)
.+++||+|||||++||++||+|+++|.+|+|+|++...+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 468999999999999999999999999999999966554
No 62
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.33 E-value=2.6e-10 Score=114.30 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=42.9
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|.+++.+ |++++++++|++|..+++.+.|++.+|+++++|.||.|.+.+.
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 34455543 6899999999999998888899999999999999999999754
No 63
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.33 E-value=4.8e-10 Score=111.47 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=43.0
Q ss_pred HHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 247 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 247 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
|.+++.+ +++++++++|++++.++++++|++++|.++++|.||.|.+.+..
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 3344443 68999999999999988889999999999999999999987653
No 64
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.32 E-value=4.1e-10 Score=112.32 Aligned_cols=52 Identities=23% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 245 LPVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
+.+.+.+.+ +...+++++|++++.+++++.|++++|+++++|.||.|.+...
T Consensus 115 ~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 115 RALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 334455443 3334889999999998899999988898999999999998754
No 65
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.32 E-value=8.4e-10 Score=110.20 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|.+.+.+ |++++.+++|+++..+++++.|++.+|+++++|.||.|.+...
T Consensus 117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc
Confidence 34454443 8899999999999988888888888888999999999998765
No 66
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.32 E-value=1.1e-10 Score=111.78 Aligned_cols=37 Identities=41% Similarity=0.531 Sum_probs=34.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
+||+|||||++||++|+.|++.|.+|+|+|++...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999877654
No 67
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.32 E-value=1.6e-10 Score=115.92 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=34.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC-CC-eEEEEecCCCCCc
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRDRVGG 65 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~~~GG 65 (507)
....+||+|||||++|+++||+|+++ |. +|+|+|++. +|+
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 45679999999999999999999995 95 999999975 443
No 68
>PRK08013 oxidoreductase; Provisional
Probab=99.31 E-value=6.8e-10 Score=110.95 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=42.8
Q ss_pred HHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 247 VINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 247 l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
|.+++.+ |++++++++|++|+.+++.+.+++.+|+++++|.||-|-+.+..
T Consensus 117 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 117 LWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 4454544 78999999999999888889898889999999999999987643
No 69
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.30 E-value=1.8e-11 Score=122.01 Aligned_cols=51 Identities=27% Similarity=0.398 Sum_probs=41.3
Q ss_pred HHHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
+.+.+.+. .|++++++++|++|..+++++.|++.+| ++.+|.||+|++...
T Consensus 153 ~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 153 EAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch
Confidence 44444443 3889999999999998888888888777 899999999998754
No 70
>PRK07588 hypothetical protein; Provisional
Probab=99.29 E-value=2.5e-10 Score=113.95 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=42.6
Q ss_pred HHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542 249 NTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 249 ~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~ 298 (507)
+++..+++|+++++|++|+.+++++.|++++|+++++|.||.|.+.+...
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence 44445689999999999999999999999999889999999999876543
No 71
>PRK06847 hypothetical protein; Provisional
Probab=99.29 E-value=4.7e-10 Score=111.41 Aligned_cols=44 Identities=43% Similarity=0.398 Sum_probs=39.6
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|++++++++|++|+.+++++.+++.+|+++.+|.||.|.+...
T Consensus 120 ~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 120 AGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred hCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 38899999999999988888889888998999999999998754
No 72
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.26 E-value=1.5e-09 Score=115.19 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 245 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 245 ~~l~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
..+.+.+.+|++++.+++|++|..++++|.|++.+|..+.+|.||+|++....
T Consensus 412 ~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 412 RALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 34444443478999999999999988889998888877789999999998653
No 73
>PRK06184 hypothetical protein; Provisional
Probab=99.25 E-value=1.6e-09 Score=111.50 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHhc-cCCcccCceeEEEEeeCCcEEEEE---cCCcEEEcCEEEEecCchhh
Q 010542 247 VINTLAK-GLDIRLGHRVTKITRHYIGVKVTV---EGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 247 l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~---~~g~~~~ad~VI~a~p~~~~ 297 (507)
|.+.+.+ |++|+++++|++|+.+++++++++ .+++++++|.||.|.+.+..
T Consensus 115 L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 115 LRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 3444443 889999999999999888888766 55668999999999987653
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.25 E-value=1.5e-10 Score=106.84 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..+||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 47999999999999999999999999999999999998864
No 75
>PRK11445 putative oxidoreductase; Provisional
Probab=99.25 E-value=2.8e-09 Score=104.50 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=38.8
Q ss_pred HHHhccCCcccCceeEEEEeeCCcEEEEE-cCCc--EEEcCEEEEecCchh
Q 010542 249 NTLAKGLDIRLGHRVTKITRHYIGVKVTV-EGGK--TFVADAVVVAVPLGV 296 (507)
Q Consensus 249 ~~l~~g~~i~~~~~V~~I~~~~~~v~v~~-~~g~--~~~ad~VI~a~p~~~ 296 (507)
+....|+++++++.|++++.+++++.|++ .+|+ ++++|.||.|.+...
T Consensus 107 ~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 107 SLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred HHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 33345889999999999998888888775 5664 689999999998764
No 76
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.24 E-value=1.2e-10 Score=107.96 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=39.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
...+||+|||||++||+||++|++.|++|+|+|++..+||.+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 457999999999999999999999999999999999998854
No 77
>PRK06834 hypothetical protein; Provisional
Probab=99.23 E-value=4.6e-09 Score=107.07 Aligned_cols=44 Identities=30% Similarity=0.339 Sum_probs=39.5
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
|++|+++++|++|+.+++++.+++.+|+++++|.||.|.+....
T Consensus 114 gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 114 GVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred CCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 88999999999999999999888888888999999999987543
No 78
>PRK08244 hypothetical protein; Provisional
Probab=99.22 E-value=3.4e-09 Score=108.99 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
++||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 58999999999999999999999999999999764
No 79
>PRK06185 hypothetical protein; Provisional
Probab=99.22 E-value=3.1e-09 Score=106.77 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+.+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34679999999999999999999999999999999753
No 80
>PRK07045 putative monooxygenase; Reviewed
Probab=99.21 E-value=7.8e-09 Score=103.05 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=40.3
Q ss_pred HHHHHhc--cCCcccCceeEEEEeeCCc--EEEEEcCCcEEEcCEEEEecCchhh
Q 010542 247 VINTLAK--GLDIRLGHRVTKITRHYIG--VKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 247 l~~~l~~--g~~i~~~~~V~~I~~~~~~--v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
+.+.+.+ |++++++++|+.|+.++++ +.|++.+|+++.+|.||.|.+....
T Consensus 112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 4444432 6899999999999987665 3578888989999999999987653
No 81
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.20 E-value=7.1e-11 Score=106.43 Aligned_cols=42 Identities=40% Similarity=0.506 Sum_probs=33.1
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
+++++++++|++|.+++++|.|++.++++++||+||+|++..
T Consensus 96 ~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 96 GLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp TGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred CcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 667999999999999999999999999899999999999953
No 82
>PRK07190 hypothetical protein; Provisional
Probab=99.19 E-value=4.8e-09 Score=106.80 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
|++|+++++|++|+.+++++.+++.+|++++|+.||.|.+.+..
T Consensus 123 Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 123 GAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSF 166 (487)
T ss_pred CCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHH
Confidence 89999999999999998888888888889999999999997653
No 83
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.19 E-value=5.7e-09 Score=95.45 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=46.1
Q ss_pred ccccchHHHHHHHhc-cCCcccCceeEEEEe---eCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542 239 LMVRGYLPVINTLAK-GLDIRLGHRVTKITR---HYIGVKVTVEGGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 239 ~~~~G~~~l~~~l~~-g~~i~~~~~V~~I~~---~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~ 298 (507)
........+.+.+++ |+.++-+..|+.+.. ++..+.|.|++|..+.++.+|+|+++....
T Consensus 151 ~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 151 NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 333444555565554 889999999998874 445678999999889999999999987654
No 84
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.18 E-value=7.3e-09 Score=107.15 Aligned_cols=40 Identities=30% Similarity=0.532 Sum_probs=35.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
...+||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 3469999999999999999999999999999999765444
No 85
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.18 E-value=9.1e-09 Score=101.90 Aligned_cols=51 Identities=2% Similarity=0.049 Sum_probs=41.0
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
.|.+++.+ +++++++++|++|..+++++.|++.++ ++++|.||-|-+.+..
T Consensus 109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34454444 468899999999999888898888777 9999999999987643
No 86
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.18 E-value=1.4e-08 Score=104.28 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=38.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+.+++||+|||||++|+++|+.|+++|.+|+|+|+++..+|-.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 3567999999999999999999999999999999987766644
No 87
>PRK05868 hypothetical protein; Validated
Probab=99.16 E-value=2.3e-08 Score=98.80 Aligned_cols=48 Identities=17% Similarity=0.085 Sum_probs=41.7
Q ss_pred HhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542 251 LAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 251 l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~~ 298 (507)
+..|++++++++|++|+.++++++|++++|+++++|.||-|-+.+...
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchH
Confidence 345889999999999998888899999999999999999999876543
No 88
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.16 E-value=2.3e-08 Score=100.60 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=36.7
Q ss_pred cCCCCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 20 ~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+++...+++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 31 ~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 31 ASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 334445678999999999999999999999999999999964
No 89
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.16 E-value=1.4e-08 Score=102.63 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=41.3
Q ss_pred HHHHHHhc----cCCcccCceeEEEEee-------CCcEEEEEcCCcEEEcCEEEEecCchhhc
Q 010542 246 PVINTLAK----GLDIRLGHRVTKITRH-------YIGVKVTVEGGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 246 ~l~~~l~~----g~~i~~~~~V~~I~~~-------~~~v~v~~~~g~~~~ad~VI~a~p~~~~~ 298 (507)
.|.+.+.+ +++++++++|++|+.+ +++++|++.+|++++||.||-|-+.+...
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChh
Confidence 34455543 3789999999999753 45688888999999999999999876543
No 90
>PRK06753 hypothetical protein; Provisional
Probab=99.15 E-value=1.4e-08 Score=100.69 Aligned_cols=44 Identities=23% Similarity=0.139 Sum_probs=38.8
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
+.+|+++++|++|+.+++++.|++.+|+++++|.||-|-+.+..
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 45799999999999888889999999989999999999987543
No 91
>PRK06996 hypothetical protein; Provisional
Probab=99.14 E-value=1.1e-08 Score=102.30 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=39.6
Q ss_pred HHHHHHhc-cCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCc
Q 010542 246 PVINTLAK-GLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPL 294 (507)
Q Consensus 246 ~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~ 294 (507)
.|.+.+.+ |++++++++|++++.++++|+++..+| +++++|.||-|-+.
T Consensus 120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 34455544 788999999999999889999887754 58999999999773
No 92
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.14 E-value=9.4e-09 Score=107.32 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=34.9
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
||+|||||++||+||..++++|.+|+|+||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 79999999999999999999999999999988776643
No 93
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.14 E-value=2.9e-09 Score=105.97 Aligned_cols=32 Identities=41% Similarity=0.570 Sum_probs=31.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+||+|||||++|++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999996
No 94
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.13 E-value=1.2e-09 Score=110.48 Aligned_cols=52 Identities=25% Similarity=0.234 Sum_probs=40.6
Q ss_pred HHHHHHHhc-----c--CCcccCceeEEEEee-CCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 245 LPVINTLAK-----G--LDIRLGHRVTKITRH-YIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 245 ~~l~~~l~~-----g--~~i~~~~~V~~I~~~-~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
..+.+.+.+ | ++|+++++|++|..+ ++.+.|++.+| ++.||.||+|++.+..
T Consensus 215 ~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 215 ESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence 445555443 6 578999999999988 44577888888 7999999999987653
No 95
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.13 E-value=1.3e-09 Score=113.17 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=35.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (507)
...+||+|||||++||++|..|++.|++|+|+|++..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 457899999999999999999999999999999987653
No 96
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.13 E-value=2.3e-11 Score=105.13 Aligned_cols=70 Identities=27% Similarity=0.457 Sum_probs=46.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCCeee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~ 106 (507)
..+||+|||||++||+||++|+++|++|+|||++..+||.++. |++.|+...-+.....+++++|++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----------Gg~lf~~iVVq~~a~~iL~elgi~y~~ 85 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----------GGMLFNKIVVQEEADEILDELGIPYEE 85 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----------CTT---EEEETTTHHHHHHHT---EE
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc----------cccccchhhhhhhHHHHHHhCCceeEE
Confidence 4689999999999999999999999999999999999986532 233332111233567899999997543
No 97
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.12 E-value=1.4e-08 Score=101.18 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=33.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 58999999999999999999999999999999874
No 98
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.12 E-value=1.1e-09 Score=110.21 Aligned_cols=42 Identities=45% Similarity=0.631 Sum_probs=39.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
...++|+|||||++||+||.+|+++|++|+|||+++.+||..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W 49 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW 49 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee
Confidence 456899999999999999999999999999999999999965
No 99
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=3.1e-08 Score=102.82 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=36.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||++||+||..++++|.+|+|+||....||.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998776663
No 100
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.11 E-value=2e-08 Score=105.22 Aligned_cols=40 Identities=30% Similarity=0.456 Sum_probs=36.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
.+.+||+|||||+.|+++|+.|+++|++|+|+|+++..+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3469999999999999999999999999999999876666
No 101
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.10 E-value=1.1e-07 Score=93.81 Aligned_cols=49 Identities=37% Similarity=0.333 Sum_probs=41.4
Q ss_pred HHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 248 INTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 248 ~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.+.+.++..+++++.|++|+..++.+.|++++|.+++|+.||-|.++..
T Consensus 94 ~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 94 LERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 3444456678999999999999998889999999999999999998654
No 102
>PLN02463 lycopene beta cyclase
Probab=99.10 E-value=3.8e-08 Score=98.56 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=37.0
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|++++ +++|++|+..++++.|++++|.+++||.||.|++...
T Consensus 127 ~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 127 NGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 377775 6799999998888899999998999999999998753
No 103
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.09 E-value=2.1e-08 Score=104.36 Aligned_cols=39 Identities=36% Similarity=0.540 Sum_probs=35.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
.+.++||+|||||++||++|+.|++.|++|+|+|+++.+
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 346789999999999999999999999999999998754
No 104
>PRK07236 hypothetical protein; Provisional
Probab=99.08 E-value=2.2e-09 Score=106.89 Aligned_cols=43 Identities=19% Similarity=0.087 Sum_probs=38.3
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
+.+++++++|++|+.++++++|++++|+++++|.||.|-+.+.
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 4579999999999998888999999999999999999987654
No 105
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.08 E-value=1.2e-09 Score=108.09 Aligned_cols=37 Identities=32% Similarity=0.550 Sum_probs=33.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
+||+|||||++|+++|++|+++|++|+|+|+.....|
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~g 37 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQG 37 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 5899999999999999999999999999999764333
No 106
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.07 E-value=4.8e-09 Score=107.63 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+..+||+|||||++||+||+.++++|.+|+||||....||..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 457899999999999999999999999999999999998854
No 107
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.05 E-value=3.3e-08 Score=98.65 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=33.9
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
||+|||||++||++|+.|++.|++|+|+|+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999877765
No 108
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=7.2e-08 Score=99.97 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~-~GG~ 66 (507)
..+||+|||||.|||+||..+ +.|.+|+|+||... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 468999999999999999999 88999999999764 4454
No 109
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.05 E-value=2.9e-09 Score=107.25 Aligned_cols=36 Identities=50% Similarity=0.774 Sum_probs=33.3
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
||+|||+|++||+||+.++++|.+|+|+||....||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999998
No 110
>PRK06126 hypothetical protein; Provisional
Probab=99.03 E-value=4e-08 Score=102.41 Aligned_cols=37 Identities=27% Similarity=0.495 Sum_probs=34.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
...+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4568999999999999999999999999999999753
No 111
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.03 E-value=2.4e-09 Score=105.47 Aligned_cols=35 Identities=43% Similarity=0.563 Sum_probs=30.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
+||+|||||++||++|..|+++|++|+|||++...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 69999999999999999999999999999997654
No 112
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.03 E-value=5.4e-09 Score=105.90 Aligned_cols=38 Identities=42% Similarity=0.666 Sum_probs=35.9
Q ss_pred eEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCCCcee
Q 010542 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRVGGRV 67 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~GG~~ 67 (507)
||+|||||++||+||+.++++| .+|+|+||.+..||.+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 7999999999999999999999 9999999999988854
No 113
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.02 E-value=1.7e-08 Score=102.48 Aligned_cols=42 Identities=19% Similarity=0.390 Sum_probs=36.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (507)
...+||+||||||.|+++||+|++. |.+|+|+||.+.+|+..
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALES 46 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence 4568999999999999999999985 78999999987776654
No 114
>PLN02661 Putative thiazole synthesis
Probab=99.02 E-value=3.5e-09 Score=100.32 Aligned_cols=43 Identities=30% Similarity=0.510 Sum_probs=38.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~~GG~~~ 68 (507)
...+||+|||||++||+||+.|+++ |++|+|+|++..+||.+.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 3468999999999999999999986 899999999999988543
No 115
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.02 E-value=1.6e-07 Score=93.72 Aligned_cols=42 Identities=36% Similarity=0.516 Sum_probs=39.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
...+||+||||||+|+.+|+.++.+|++|+|+|+++...|-.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCccc
Confidence 378999999999999999999999999999999999888854
No 116
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.02 E-value=1.9e-07 Score=97.89 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=37.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
...+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 35789999999999999999999999999999998776663
No 117
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.02 E-value=6.3e-08 Score=96.44 Aligned_cols=36 Identities=36% Similarity=0.505 Sum_probs=33.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (507)
+||+|||||++|++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 689999999999999999999999999999976543
No 118
>PRK07538 hypothetical protein; Provisional
Probab=99.01 E-value=1.8e-07 Score=93.94 Aligned_cols=35 Identities=29% Similarity=0.578 Sum_probs=32.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 58999999999999999999999999999997644
No 119
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.00 E-value=2.3e-09 Score=107.43 Aligned_cols=56 Identities=41% Similarity=0.581 Sum_probs=47.4
Q ss_pred CCCCCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCCCceeEeccCCCeeeec
Q 010542 24 GQARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRVHTDYSFGFPVDL 79 (507)
Q Consensus 24 ~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~GG~~~s~~~~g~~~d~ 79 (507)
+..+.+||+|||||++||++|++|.++|.. ++||||++++||--+....++...+.
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~ 60 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDS 60 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECC
Confidence 356789999999999999999999999998 99999999999976555555555544
No 120
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.00 E-value=1.5e-08 Score=103.37 Aligned_cols=42 Identities=43% Similarity=0.551 Sum_probs=37.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC--CCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR--VGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~--~GG~~ 67 (507)
...+||+|||||++||+||+.|+++|.+|+|+||... .||.+
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 4578999999999999999999999999999999874 56643
No 121
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.00 E-value=8.1e-09 Score=104.75 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=35.0
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (507)
+||+||||||+|+++|++|++. |.+|+|+|+.+.+|...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~ 41 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES 41 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence 5999999999999999999997 99999999987776544
No 122
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.99 E-value=1.2e-08 Score=102.84 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=37.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (507)
...+||+||||||+|+++|+.|++. |.+|+|+|+.+.+|-.+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~s 47 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIES 47 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhc
Confidence 4568999999999999999999998 89999999966776654
No 123
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.98 E-value=4.8e-09 Score=104.96 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
.|.+.+.+ +++++++++|+++..+++++.+++.+|+++.+|.||.|.+....
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 34455543 47899999999999888889898889989999999999987643
No 124
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.97 E-value=1.9e-07 Score=97.87 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 4689999999999999999999999999999998776663
No 125
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.97 E-value=6.2e-08 Score=100.38 Aligned_cols=50 Identities=24% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHHhccC---CcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 247 VINTLAKGL---DIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 247 l~~~l~~g~---~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
|.+.|.+.+ .++++++|++|+..+++++|++++|+++.+|.||.|-+.+.
T Consensus 196 L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 196 LQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCc
Confidence 445554422 36789999999999999999999998999999999998765
No 126
>PLN02697 lycopene epsilon cyclase
Probab=98.96 E-value=5.3e-07 Score=91.88 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
...+||+|||||++||++|..|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 45699999999999999999999999999999984
No 127
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.95 E-value=1.1e-08 Score=98.21 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=36.3
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
|+++++ ++|++|+..++.+.+++.+|+++.+|+||+|++..
T Consensus 71 gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 71 GAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred CCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCC
Confidence 778888 89999999888888888888899999999999874
No 128
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=4e-09 Score=108.26 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=37.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
+..++||+|||||++|+++|+.|+++|.+|+|+|+++..+|-
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 456799999999999999999999999999999998765553
No 129
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.93 E-value=2.1e-08 Score=100.87 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=41.7
Q ss_pred HHHHHhc---cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 247 VINTLAK---GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 247 l~~~l~~---g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
|.+.|.+ ...++++++|++|+..+++|+|++++|+++.+|.||.|.+.+..
T Consensus 107 l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 107 FLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 4444543 34688999999999988889999999989999999999987653
No 130
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.93 E-value=5e-08 Score=100.92 Aligned_cols=41 Identities=34% Similarity=0.639 Sum_probs=38.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..++||+|||+| +||+||...++.|.+|+|+||.+.+||.+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 568999999999 89999999999999999999999999965
No 131
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.93 E-value=2.4e-07 Score=97.36 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=33.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~ 61 (507)
.+++||+|||||++||++|..|++ .|++|+|+|+.+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 568999999999999999999999 499999999975
No 132
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.92 E-value=9.9e-08 Score=93.21 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=53.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEeccC--CCeeeecCCceeeCCCCCCchHHHHHhcC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHTDYS--FGFPVDLGASWLHGVCQENPLAPVISRLG 101 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~l~~~lg 101 (507)
+.++-|||+|+|+|+||.+|-+. |.+|+|||+.+..||.+.+... .||..- |+..+. .....+++|+..+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~R-gGR~~~--~~~eclwdLls~IP 78 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIR-GGRMME--FHYECLWDLLSSIP 78 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeec-CCcccc--chhHHHHHHHHhCC
Confidence 56789999999999999999987 5699999999999999866433 366553 333221 23446777777654
Q ss_pred C
Q 010542 102 L 102 (507)
Q Consensus 102 ~ 102 (507)
-
T Consensus 79 S 79 (500)
T PF06100_consen 79 S 79 (500)
T ss_pred C
Confidence 3
No 133
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.91 E-value=2.8e-08 Score=98.95 Aligned_cols=36 Identities=36% Similarity=0.657 Sum_probs=34.1
Q ss_pred EEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 32 IVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 32 ~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+|||||++||+||..|+++|++|+|+|+++.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 699999999999999999999999999999998865
No 134
>PRK09897 hypothetical protein; Provisional
Probab=98.90 E-value=2.9e-08 Score=100.97 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=36.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCC-ceeEe
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVG-GRVHT 69 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~G-G~~~s 69 (507)
+++|+|||||.+|+++|.+|.+.+ .+|+|||++..+| |...+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 468999999999999999998864 5899999999888 55444
No 135
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.89 E-value=1e-07 Score=99.45 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=40.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
....+||+|||+|.+|++||+.++++|++|+|+||.+.+||.+.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 46689999999999999999999999999999999998898753
No 136
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.87 E-value=4.1e-08 Score=96.55 Aligned_cols=235 Identities=17% Similarity=0.160 Sum_probs=119.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccC---------------------CCeeeecCCce
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYS---------------------FGFPVDLGASW 83 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~---------------------~g~~~d~G~~~ 83 (507)
+++.+||+|+|-|+.-...|..|++.|++|+.+|+++..||...|... ..+.+|+-+..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl 80 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL 80 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence 356899999999999999999999999999999999999999888541 13568887777
Q ss_pred eeCCCCCCchHHHHHhcCCCee---eecCCCcccccccchhhhhhhhhhHHhhhcccceeecCCCCccCHHH-HHHHHHH
Q 010542 84 LHGVCQENPLAPVISRLGLPLY---RTSGDNSVLYDHDLESRVLKTVVVSLIQANLCYALFDMDGNQVPQEL-VTKVGEA 159 (507)
Q Consensus 84 ~~~~~~~~~~~~l~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (507)
+. ....+.+++-+.++..+ ..-... .++.++... ..-......+.... .-..+..
T Consensus 81 l~---a~g~LV~lLi~S~V~rYLEFk~V~~~-~v~~~~~l~-----------------kVP~sr~dvf~s~~lsl~eKR~ 139 (438)
T PF00996_consen 81 LY---ARGPLVKLLISSGVTRYLEFKAVDGS-YVYKNGKLH-----------------KVPCSREDVFKSKLLSLFEKRR 139 (438)
T ss_dssp EE---TTSHHHHHHHHCTGGGGSEEEEESEE-EEEETTEEE-----------------E--SSHHHHHC-TTS-HHHHHH
T ss_pred hh---ccCHHHHHHHhCCcccceEEEEccee-EEEeCCEEe-----------------eCCCCHHHhhcCCCccHHHHHH
Confidence 75 45567777777776521 111111 111111000 00000000000010 0111233
Q ss_pred HHHHHHHHHHHhhc--------CCCCCcHHHHHHHHhccChhHHhhhhHHHHHHHHHHhhhccccCCcccccccccC---
Q 010542 160 FESILKETDKVREE--------HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETISLKSWD--- 228 (507)
Q Consensus 160 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--- 228 (507)
+.+|+..+...... .....++.+++.. .++++...+.+...++.....+-...+.....
T Consensus 140 lmkFl~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~----------f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri 209 (438)
T PF00996_consen 140 LMKFLKFVANYEEDDPSTHKGLDPEKKTFQELLKK----------FGLSENLIDFIGHAIALSLDDSYLTEPAREGLERI 209 (438)
T ss_dssp HHHHHHHHHHGCTTBGGGSTTG-TTTSBHHHHHHH----------TTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHH
T ss_pred HHHHHHHHhhcccCCcchhhccccccccHHHHHHh----------cCCCHHHHHHHHHhhhhccCcccccccHHHHHHHH
Confidence 45555555443321 2235677777653 35655555544332222111110000001000
Q ss_pred c------cccccCCccccccchHHHHHHHhc-----cCCcccCceeEEEEeeCC-cEE-EEEcCCcEEEcCEEEEe
Q 010542 229 K------EELLPGGHGLMVRGYLPVINTLAK-----GLDIRLGHRVTKITRHYI-GVK-VTVEGGKTFVADAVVVA 291 (507)
Q Consensus 229 ~------~~~~~~~~~~~~~G~~~l~~~l~~-----g~~i~~~~~V~~I~~~~~-~v~-v~~~~g~~~~ad~VI~a 291 (507)
. -.+..+..-++.-|...|.+++.+ |+...+|++|.+|..+.+ ++. |. .+|++++|++||..
T Consensus 210 ~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~-s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 210 KLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVK-SEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEE-ETTEEEEESEEEEE
T ss_pred HHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEe-cCCEEEEcCEEEEC
Confidence 0 011122344666788888888864 889999999999998654 443 44 47889999999954
No 137
>PRK07121 hypothetical protein; Validated
Probab=98.87 E-value=7.8e-08 Score=98.72 Aligned_cols=41 Identities=34% Similarity=0.505 Sum_probs=38.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..+||+|||||++||+||+.++++|.+|+|+||....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 57899999999999999999999999999999999888854
No 138
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=3.1e-08 Score=98.02 Aligned_cols=44 Identities=45% Similarity=0.586 Sum_probs=40.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+..+|+|||||.|||++|.+|.+.|++|+||||++.+||.-.-
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 45789999999999999999999999999999999999996543
No 139
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.86 E-value=4.2e-08 Score=83.90 Aligned_cols=48 Identities=31% Similarity=0.481 Sum_probs=38.5
Q ss_pred HHHHHhccCCcc-cCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542 247 VINTLAKGLDIR-LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 294 (507)
Q Consensus 247 l~~~l~~g~~i~-~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 294 (507)
+.+.+..|++|. ...+|+.|...++++.|.+++|..+.||+||+|++.
T Consensus 107 ~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 107 LLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 334444466443 477999999999999999999999999999999974
No 140
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.86 E-value=2.7e-08 Score=104.39 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
..+||+|||||+|||+||..+++.|.+|+|+||...+|+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 468999999999999999999999999999999777754
No 141
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.86 E-value=2e-08 Score=102.65 Aligned_cols=40 Identities=40% Similarity=0.615 Sum_probs=34.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
++|+|||||++||+||..|.+.|++|++||+++.+||--+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 6899999999999999999999999999999999999653
No 142
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.86 E-value=3.2e-07 Score=90.19 Aligned_cols=37 Identities=32% Similarity=0.662 Sum_probs=34.2
Q ss_pred eEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCce
Q 010542 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR 66 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~ 66 (507)
||+|||||++||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999998877763
No 143
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.85 E-value=6.4e-08 Score=97.27 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||+|.|||+||..++ +|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999985 69999999999887774
No 144
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.85 E-value=9.7e-08 Score=97.44 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=39.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
...+||+|||||++|++||++|++.|++|+|+|+++.+||.|
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~ 44 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC 44 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 356999999999999999999999999999999988999976
No 145
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.84 E-value=6.4e-08 Score=100.07 Aligned_cols=41 Identities=29% Similarity=0.464 Sum_probs=37.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
...+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 45799999999999999999999999999999998877763
No 146
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.82 E-value=2.5e-07 Score=95.93 Aligned_cols=41 Identities=34% Similarity=0.637 Sum_probs=38.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
.++||+|||+|.+||+||+.|+++|.+|+|||+....||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 47899999999999999999999999999999998888864
No 147
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.82 E-value=2e-07 Score=95.96 Aligned_cols=41 Identities=34% Similarity=0.579 Sum_probs=37.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+.++||+||||| +||+||+.+++.|.+|+|+||....||.+
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 347899999999 99999999999999999999998888854
No 148
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=1.3e-07 Score=96.55 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=38.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...|||+|||||.+|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 35799999999999999999999999999999995 8899764
No 149
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.82 E-value=1.2e-07 Score=99.05 Aligned_cols=43 Identities=33% Similarity=0.503 Sum_probs=39.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...+||+|||||++||+||+.++++|.+|+|+||....||.+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 4578999999999999999999999999999999999998753
No 150
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.80 E-value=1.4e-07 Score=95.62 Aligned_cols=40 Identities=43% Similarity=0.571 Sum_probs=37.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
.|||+|||||++|++||..+++.|++|+|+|+ +.+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence 58999999999999999999999999999999 58999763
No 151
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.80 E-value=1e-07 Score=97.83 Aligned_cols=38 Identities=26% Similarity=0.620 Sum_probs=34.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..||+|||+|+|||+||..+++ |.+|+|+||....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 6799999999999999999976 8999999998877774
No 152
>PRK12839 hypothetical protein; Provisional
Probab=98.79 E-value=2.7e-07 Score=95.73 Aligned_cols=44 Identities=30% Similarity=0.470 Sum_probs=40.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
....+||+|||+|.+||+||+.|+++|.+|+|+||...+||.+.
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 34679999999999999999999999999999999999999763
No 153
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.78 E-value=1e-06 Score=83.65 Aligned_cols=36 Identities=44% Similarity=0.794 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
+.+|+||||||+||++|..|.++|++|+|+|++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 578999999999999999999999999999997543
No 154
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.77 E-value=7.8e-08 Score=97.95 Aligned_cols=40 Identities=38% Similarity=0.483 Sum_probs=36.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~ 66 (507)
..+||+|||||.||+.||+.+++.|++|+|+|++ +.+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 4699999999999999999999999999999997 467653
No 155
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.76 E-value=1.1e-07 Score=97.94 Aligned_cols=43 Identities=21% Similarity=0.205 Sum_probs=38.1
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
|++++++++|++|...++.+.|++.+|+++.||.||+|++...
T Consensus 280 gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 280 DVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred CCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 7889999999999998788888888888999999999999743
No 156
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.75 E-value=1.6e-07 Score=95.67 Aligned_cols=42 Identities=33% Similarity=0.458 Sum_probs=38.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..++||+|||||.+|++||..|++.|++|+|+|+.+.+||.|
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 346999999999999999999999999999999988899965
No 157
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.75 E-value=1.7e-07 Score=95.94 Aligned_cols=38 Identities=42% Similarity=0.565 Sum_probs=34.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
.+||+|||||+|||+||..+++.|. |+|+||.+..||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 4799999999999999999999998 9999998777774
No 158
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.75 E-value=1.2e-07 Score=94.23 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=33.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
+.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 358999999999999999999999999999999874
No 159
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=1.5e-07 Score=98.79 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
..+||+|||||+|||+||..+++.|.+|+|+||....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 468999999999999999999999999999999876555
No 160
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.75 E-value=4.1e-07 Score=94.78 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=38.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
....+||+|||+|++||+||+.++++|.+|+||||....||.
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 345799999999999999999999999999999999988884
No 161
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.74 E-value=5.9e-07 Score=93.28 Aligned_cols=42 Identities=29% Similarity=0.492 Sum_probs=38.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..++||+|||+|.+|++||..++++|.+|+||||...+||.+
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 357999999999999999999999999999999998888854
No 162
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.74 E-value=3.5e-07 Score=95.01 Aligned_cols=41 Identities=44% Similarity=0.754 Sum_probs=38.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC--CCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD--RVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~--~~GG~~ 67 (507)
..+||+|||+|.+||+||..++++|.+|+|+||.+ ..||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 57899999999999999999999999999999998 788865
No 163
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.74 E-value=1.2e-07 Score=97.55 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=37.6
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
|++++++++|++|..+++.+.+++.+|+++.+|+||+|++..
T Consensus 281 gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 281 PIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred CCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 788999999999998877788888888889999999999975
No 164
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.3e-08 Score=90.33 Aligned_cols=40 Identities=40% Similarity=0.605 Sum_probs=33.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~~~GG~~ 67 (507)
+.+||+|||||++||+||.+++++|.+ ++|+|+ ..+||..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~ 42 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQL 42 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCcc
Confidence 579999999999999999999999998 555555 6777654
No 165
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.7e-07 Score=97.85 Aligned_cols=39 Identities=21% Similarity=0.465 Sum_probs=34.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCce
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDRVGGR 66 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~~GG~ 66 (507)
.+||+|||||++||+||+.++++| .+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 579999999999999999999874 799999998776663
No 166
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.72 E-value=3e-07 Score=93.47 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++||+|||||++||+||..+++.|.+|+|+||..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4899999999999999999999999999999974
No 167
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.71 E-value=2.3e-07 Score=94.69 Aligned_cols=40 Identities=30% Similarity=0.408 Sum_probs=36.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+++||+|||||++|++||.+|++.|++|+|+|+ ..+||.|
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c 42 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVC 42 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCce
Confidence 369999999999999999999999999999998 5788876
No 168
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.71 E-value=3.5e-07 Score=93.38 Aligned_cols=40 Identities=38% Similarity=0.510 Sum_probs=37.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..|||+|||||.+|++||..|++.|++|+|+|+.. +||.|
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c 42 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTC 42 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccce
Confidence 56999999999999999999999999999999976 89966
No 169
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.71 E-value=2.1e-07 Score=93.19 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHhc--cCCcccCceeEEEEeeCCcEEEEEc---CCcEEEcCEEEEecCchhhc
Q 010542 246 PVINTLAK--GLDIRLGHRVTKITRHYIGVKVTVE---GGKTFVADAVVVAVPLGVLK 298 (507)
Q Consensus 246 ~l~~~l~~--g~~i~~~~~V~~I~~~~~~v~v~~~---~g~~~~ad~VI~a~p~~~~~ 298 (507)
.|.+++.+ +++++++++|+++..+++++.+++. +++++++|.||-|-+.+...
T Consensus 112 ~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhH
Confidence 34455543 6789999999999988888877653 34578999999999876543
No 170
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.69 E-value=2.7e-07 Score=95.33 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
....+||+|||||+|||+||..++ .|.+|+|+||....||.
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 356799999999999999999996 59999999999887774
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.69 E-value=2.2e-07 Score=96.45 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=37.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...+||+|||||++||+||.+|++.|++|+|+|+ ..+||.+.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~ 43 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQIT 43 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEE
Confidence 3469999999999999999999999999999999 47888764
No 172
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.68 E-value=9.3e-07 Score=92.27 Aligned_cols=43 Identities=44% Similarity=0.548 Sum_probs=39.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..++||+|||+|.+||+||+.++++|++|+|+||.+.+||.+.
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 4578999999999999999999999999999999999999653
No 173
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=4.3e-07 Score=94.71 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||+|||+||..+++.|.+|+|+||....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998776663
No 174
>PLN02815 L-aspartate oxidase
Probab=98.67 E-value=3.5e-07 Score=94.98 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=35.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||++||+||..+++.| +|+|+||....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4689999999999999999999999 99999998887773
No 175
>PTZ00367 squalene epoxidase; Provisional
Probab=98.66 E-value=4.7e-06 Score=86.00 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999964
No 176
>PRK08275 putative oxidoreductase; Provisional
Probab=98.66 E-value=3.5e-07 Score=95.04 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=34.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCc
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGG 65 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG 65 (507)
..+||+|||||.|||+||..++++ |.+|+|+||....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 468999999999999999999987 689999999876433
No 177
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=7.7e-07 Score=93.00 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC---CeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDAS---FKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G---~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||+|||+||..++++| .+|+|+||....||.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 4689999999999999999999998 899999998877664
No 178
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.65 E-value=7.2e-07 Score=88.79 Aligned_cols=42 Identities=40% Similarity=0.588 Sum_probs=39.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
.++||++|||||.+|.+||.++++.|.+|.|+|+...+||-|
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtC 43 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTC 43 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceE
Confidence 467999999999999999999999999999999987999976
No 179
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.65 E-value=2.9e-07 Score=94.60 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
....||+|||||++||+||..++ |.+|+|+||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 35789999999999999999997 569999999876
No 180
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.64 E-value=9.5e-07 Score=92.51 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=34.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (507)
..+||+|||||+|||+||..+++. |.+|+|+||....+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 458999999999999999999998 99999999987543
No 181
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=1.1e-06 Score=91.87 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=36.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
...+||+|||||.|||+||..+++.|.+|+|+||....||.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 45689999999999999999999999999999998776663
No 182
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.62 E-value=4.8e-07 Score=94.54 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=32.3
Q ss_pred EEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 31 VIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
|+|||||+|||+||..+++.|.+|+|+||...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 69999999999999999999999999999886654
No 183
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=1.2e-06 Score=91.63 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||++||+||..+++.|.+|+|+||....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999997766553
No 184
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.62 E-value=6.9e-07 Score=93.15 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=35.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~ 66 (507)
..+||+|||||+|||+||..+++. |.+|+|+||....||.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 458999999999999999999987 4799999998777763
No 185
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.60 E-value=9e-07 Score=92.09 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (507)
.+||+|||||+|||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57999999999999999999987 57999999988777743
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.59 E-value=8.4e-07 Score=89.65 Aligned_cols=34 Identities=47% Similarity=0.687 Sum_probs=30.5
Q ss_pred EECccHHHHHHHHHHHhCCCeEEEEecCCC--CCce
Q 010542 33 VIGAGMAGVAAARALHDASFKVVLLESRDR--VGGR 66 (507)
Q Consensus 33 IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~--~GG~ 66 (507)
|||+|++||+||+.++++|.+|+|+||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 799999999999999999999999999874 4553
No 187
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.58 E-value=1.6e-07 Score=90.67 Aligned_cols=42 Identities=33% Similarity=0.290 Sum_probs=34.2
Q ss_pred cCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchh
Q 010542 254 GLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
+++|. ..+|++|..+++++. |.+.+|+.+.+|.||+|+++..
T Consensus 110 nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 110 NLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp TEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred CeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 56774 678999999998876 8899999999999999998843
No 188
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.56 E-value=1.1e-06 Score=98.68 Aligned_cols=42 Identities=36% Similarity=0.605 Sum_probs=39.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
....||+|||+|.+||+||...+++|.+|+|+||....||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 357999999999999999999999999999999999999854
No 189
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.6e-06 Score=90.55 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
++.||+|||||+|||+||..++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 3569999999999999999999999999999998876663
No 190
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.54 E-value=3.2e-07 Score=91.32 Aligned_cols=42 Identities=19% Similarity=0.091 Sum_probs=37.8
Q ss_pred cCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCchh
Q 010542 254 GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
|+.|..||+|++|....+++ -|+|..| .+++.+||.|++..+
T Consensus 201 GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 201 GALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred CcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHH
Confidence 88999999999999887664 5999999 899999999999876
No 191
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.53 E-value=7.2e-07 Score=81.23 Aligned_cols=38 Identities=37% Similarity=0.656 Sum_probs=35.8
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
.|+|||+|++||+|+..|...|-.|+++|++..+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 69999999999999999999988899999999999975
No 192
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.53 E-value=1.5e-06 Score=91.65 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
..+||+|||||++||+||..++++|.+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 468999999999999999999999999999999876655
No 193
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.52 E-value=1.1e-05 Score=74.31 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=34.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRV 63 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~ 63 (507)
.+...||+|||||.+|+++||.|.++ |++|+|+|+++..
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 45689999999999999999999864 7999999998754
No 194
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=4.1e-06 Score=87.58 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
..+||+|||||++||+||+.+++. .+|+|+||....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 468999999999999999999986 89999999775555
No 195
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.47 E-value=1.9e-07 Score=101.67 Aligned_cols=43 Identities=30% Similarity=0.530 Sum_probs=40.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...++|+|||||+|||+||++|+++|++|+|||+.+++||.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3578999999999999999999999999999999999999875
No 196
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.44 E-value=4.2e-06 Score=86.62 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=35.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
...+||+|||+|++||+||..+++. .+|+|+||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3568999999999999999999986 899999998877774
No 197
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.43 E-value=2.6e-07 Score=99.81 Aligned_cols=44 Identities=36% Similarity=0.552 Sum_probs=40.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+.++|+|||||+|||+||++|++.|++|+|||+.+.+||.++.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 35689999999999999999999999999999999999998854
No 198
>PRK12831 putative oxidoreductase; Provisional
Probab=98.42 E-value=3.7e-07 Score=92.62 Aligned_cols=44 Identities=30% Similarity=0.520 Sum_probs=41.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..+.+||+|||||++||+||++|++.|++|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 45789999999999999999999999999999999999999874
No 199
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.42 E-value=9.4e-06 Score=78.80 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=36.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~ 67 (507)
+.+||++|||||.|.+.++.|++. ..+|.|+|+.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence 579999999999999999999986 57999999998876644
No 200
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.39 E-value=5.3e-07 Score=90.75 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHD--ASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~s 69 (507)
....+|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 456789999999999999999997 69999999999999998764
No 201
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.38 E-value=3.5e-07 Score=93.10 Aligned_cols=41 Identities=34% Similarity=0.502 Sum_probs=38.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
++|||+|||||.+|++||.++++.|++|+|+|+++.+||.|
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 35899999999999999999999999999999888999986
No 202
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.36 E-value=1.3e-05 Score=81.77 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=35.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+.||+|||||.+|++||..|++.|++|+|+|+. .+||.|
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c 39 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAA 39 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcc
Confidence 468999999999999999999999999999985 588876
No 203
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.36 E-value=8.4e-05 Score=72.20 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=69.4
Q ss_pred hHHhhhhHHHHHHHHHHhh-hccccCCcccccccccCc-cccccCCccccccchHHHHHHHhc--cCCcccCceeEEE-E
Q 010542 193 ELRLEGLAHKVLQWYLCRM-EGWFAADAETISLKSWDK-EELLPGGHGLMVRGYLPVINTLAK--GLDIRLGHRVTKI-T 267 (507)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~G~~~l~~~l~~--g~~i~~~~~V~~I-~ 267 (507)
++...++++.+++.++.+. +.-|+.+. ++....... ..-..++.+.+.||..++.+.|.+ +.++ +|++|++| .
T Consensus 75 ~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~ 152 (368)
T PF07156_consen 75 YLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITR 152 (368)
T ss_pred HHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEe
Confidence 3556788888888887775 45677753 333322221 111346677899999999999976 8899 99999999 4
Q ss_pred eeCCc---EEEEEcC--C-cEEEcCEEEEecCchh
Q 010542 268 RHYIG---VKVTVEG--G-KTFVADAVVVAVPLGV 296 (507)
Q Consensus 268 ~~~~~---v~v~~~~--g-~~~~ad~VI~a~p~~~ 296 (507)
..+++ +.|++.+ + ....+|.||+|+|...
T Consensus 153 ~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 153 RSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred ccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 44443 3455443 2 2346799999999964
No 204
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.35 E-value=4.5e-07 Score=92.61 Aligned_cols=41 Identities=34% Similarity=0.506 Sum_probs=38.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+||+|||||++|++||++|++.|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 48999999999999999999999999999999 899998753
No 205
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.35 E-value=4.2e-07 Score=87.31 Aligned_cols=43 Identities=49% Similarity=0.752 Sum_probs=40.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
...+++|||||++|++||..|++.|++|.++||++.+||++..
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 4678999999999999999999999999999999999999754
No 206
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.35 E-value=5.3e-07 Score=91.34 Aligned_cols=42 Identities=38% Similarity=0.449 Sum_probs=38.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC-CCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR-VGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~-~GG~~~ 68 (507)
+.+||+|||||.+|++||..|++.|++|+|+|+++. +||.|.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 369999999999999999999999999999999864 699763
No 207
>PRK06116 glutathione reductase; Validated
Probab=98.34 E-value=4.6e-07 Score=92.10 Aligned_cols=40 Identities=38% Similarity=0.610 Sum_probs=37.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..+||+|||||++|++||..|++.|++|+|+|+. .+||-|
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c 42 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTC 42 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhh
Confidence 4699999999999999999999999999999995 899966
No 208
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.33 E-value=4.8e-07 Score=91.66 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=37.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
+.+||+|||||.+|++||..|++.|++|+|+|+ +.+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-ccccccee
Confidence 469999999999999999999999999999999 57899763
No 209
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.33 E-value=5.8e-07 Score=91.13 Aligned_cols=42 Identities=31% Similarity=0.492 Sum_probs=38.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC-CCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD-RVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~-~~GG~~~ 68 (507)
+.+||+|||||.+|++||++|++.|++|+|+|+.+ .+||.|.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 46999999999999999999999999999999976 5799774
No 210
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.33 E-value=1.1e-05 Score=88.62 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=33.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
...+||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3468999999999999999999999999999999764
No 211
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.32 E-value=6.4e-07 Score=96.44 Aligned_cols=44 Identities=41% Similarity=0.542 Sum_probs=40.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+.++|+|||||++||+||++|++.|++|+|+|+.+.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 46789999999999999999999999999999999999998754
No 212
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.32 E-value=1.9e-05 Score=78.45 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=44.7
Q ss_pred hHHHHHHHhccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchhh
Q 010542 244 YLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 244 ~~~l~~~l~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
...+.+++.+|++++.+++|++|+.+++++.|++.+|..+.+|+||+|+++...
T Consensus 138 ~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 138 CRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 344555555588999999999999988888899988977999999999998753
No 213
>PRK06370 mercuric reductase; Validated
Probab=98.29 E-value=8.4e-07 Score=90.49 Aligned_cols=43 Identities=37% Similarity=0.465 Sum_probs=38.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
+..++||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 456799999999999999999999999999999995 6777653
No 214
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.29 E-value=1.3e-05 Score=81.86 Aligned_cols=39 Identities=38% Similarity=0.382 Sum_probs=34.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 699999999999999999999999999999975544443
No 215
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.28 E-value=8.4e-07 Score=90.54 Aligned_cols=41 Identities=44% Similarity=0.541 Sum_probs=37.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
+++||+|||||.+|++||.+|++.|++|+|+|+ +.+||.|.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 469999999999999999999999999999999 78999763
No 216
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.28 E-value=6.5e-07 Score=90.03 Aligned_cols=38 Identities=47% Similarity=0.621 Sum_probs=32.9
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
||+|||||++|++||+.+++.|.+|+|+|+.+.+||..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~ 38 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA 38 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc
Confidence 89999999999999999999999999999999999965
No 217
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.27 E-value=9.1e-07 Score=83.37 Aligned_cols=44 Identities=32% Similarity=0.580 Sum_probs=38.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC------CCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA------SFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~------G~~V~vlE~~~~~GG~~~s 69 (507)
...+||+|||||.+||+||.+|.+. -.+|+|+||...+||.+-|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 5679999999999999999999763 3689999999999998755
No 218
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.27 E-value=1.7e-06 Score=85.89 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~s 69 (507)
....+|+|||||+|||+||.+|+ +.|++|+|||+.+.+||.++.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 45678999999999999999765 569999999999999999876
No 219
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.26 E-value=3.9e-06 Score=76.42 Aligned_cols=44 Identities=30% Similarity=0.463 Sum_probs=37.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (507)
...+|++||||||.||++|..|.-+ +.+|.|+||...++=...+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg 91 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG 91 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence 4689999999999999999999866 8999999998877654433
No 220
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.26 E-value=1.2e-06 Score=92.99 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=40.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+.++|+|||||++||+||+.|++.|++|+|||+.+.+||.++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35789999999999999999999999999999999999998753
No 221
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.26 E-value=8.2e-05 Score=72.61 Aligned_cols=53 Identities=23% Similarity=0.166 Sum_probs=42.2
Q ss_pred hHHHHHHHh-ccCCcccCceeEEEEeeCCcEE-EEEcCCcEEEcCEEEEecCchhh
Q 010542 244 YLPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VTVEGGKTFVADAVVVAVPLGVL 297 (507)
Q Consensus 244 ~~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~~~~g~~~~ad~VI~a~p~~~~ 297 (507)
...+.+.+. .|++++.+++|++|..+++++. |.+.+| ++.||+||+|+++...
T Consensus 140 ~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 140 LKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 444555444 3889999999999999888765 777777 8999999999998753
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.25 E-value=1.6e-06 Score=87.87 Aligned_cols=43 Identities=40% Similarity=0.552 Sum_probs=40.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
.+.+||+|||||++||+||+.|++.|++|+|+|+++.+||.+.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 4578999999999999999999999999999999999999764
No 223
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.25 E-value=1.1e-06 Score=96.60 Aligned_cols=42 Identities=33% Similarity=0.459 Sum_probs=39.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
+.++|+|||||++||+||++|++.|++|+|||+.+.+||.++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 568999999999999999999999999999999999999875
No 224
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.22 E-value=2.3e-05 Score=80.42 Aligned_cols=43 Identities=35% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
...++||+|||||.|||.||..+++.|.+|+|+||....+|.+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 3567999999999999999999999999999999988777543
No 225
>PRK14694 putative mercuric reductase; Provisional
Probab=98.20 E-value=1.7e-06 Score=88.31 Aligned_cols=43 Identities=28% Similarity=0.426 Sum_probs=39.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
.+..+||+|||||++|++||..|++.|++|+|+|+. .+||-|.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 356899999999999999999999999999999995 7899764
No 226
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.19 E-value=2.1e-06 Score=92.65 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=40.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...++|+|||||++||+||++|++.|++|+|||+.+.+||.++
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4678999999999999999999999999999999999999864
No 227
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=85.52 Aligned_cols=45 Identities=38% Similarity=0.437 Sum_probs=41.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.....+|+|||||++||+||+.|+++|++|+|+|+.+..||++..
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 345589999999999999999999999999999999999999855
No 228
>PRK10262 thioredoxin reductase; Provisional
Probab=98.19 E-value=1.9e-06 Score=83.43 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..+.+||+|||||++||+||..|++.|++|+|+|+ ...||.+.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~ 45 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLT 45 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCcee
Confidence 45789999999999999999999999999999996 46788653
No 229
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.18 E-value=2.7e-06 Score=86.75 Aligned_cols=43 Identities=42% Similarity=0.638 Sum_probs=40.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4568999999999999999999999999999999999999764
No 230
>PLN02985 squalene monooxygenase
Probab=98.17 E-value=2.2e-06 Score=87.81 Aligned_cols=40 Identities=33% Similarity=0.470 Sum_probs=35.8
Q ss_pred CCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 23 KGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 23 ~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
......+||+|||||++||++|+.|+++|++|+|+|+...
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3356789999999999999999999999999999999643
No 231
>PRK14727 putative mercuric reductase; Provisional
Probab=98.17 E-value=2.5e-06 Score=87.21 Aligned_cols=43 Identities=30% Similarity=0.412 Sum_probs=40.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
+..+||+|||||.+|++||..|++.|.+|+|+|+.+.+||.|.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 4579999999999999999999999999999999889999874
No 232
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.17 E-value=1.9e-06 Score=87.87 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=35.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+||+|||||++|++||.+|++.|++|+|+|+.. +||.|
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 699999999999999999999999999999965 78865
No 233
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=2.2e-06 Score=87.59 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=37.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec------CCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES------RDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~------~~~~GG~~ 67 (507)
.+.+|++|||||.+|++||.+|++.|.+|+|+|+ ...+||.|
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c 49 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC 49 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence 3469999999999999999999999999999998 35678866
No 234
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.15 E-value=1.3e-05 Score=81.55 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=34.6
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEc-CCcEEE--cCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVE-GGKTFV--ADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~-~g~~~~--ad~VI~a~p~~ 295 (507)
.|+++++++.|++|+.+++.+.++.. +|+++. ||++|+|++..
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCC
Confidence 38899999999999988887777642 355666 99999999865
No 235
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.14 E-value=2.7e-06 Score=87.18 Aligned_cols=50 Identities=22% Similarity=0.170 Sum_probs=39.5
Q ss_pred HHHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 246 PVINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 246 ~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.+.+.|. .|+++++++.|++|...++.+.+.+.+|+++.+|.||++++..
T Consensus 227 ~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 227 KVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 3445554 3899999999999987666667777788889999999999754
No 236
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.14 E-value=3.5e-06 Score=89.16 Aligned_cols=43 Identities=30% Similarity=0.519 Sum_probs=40.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...++|+|||||++||+||+.|++.|++|+|+|+++.+||.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3568999999999999999999999999999999999999874
No 237
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.14 E-value=3.5e-05 Score=78.22 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+||++|||||.+|..||.. +.|++|+|+|+ +.+||-|
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC 38 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTC 38 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCee
Confidence 5899999999999998754 46999999998 6789966
No 238
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.13 E-value=3e-06 Score=90.29 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
.+.++|+|||||+|||+||++|++.|++|+|+|+.+..|+-
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 46789999999999999999999999999999997765553
No 239
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.13 E-value=3.3e-06 Score=89.29 Aligned_cols=44 Identities=36% Similarity=0.542 Sum_probs=40.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+..+|+|||||++||+||+.|++.|++|+|||+.+.+||.++.
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 35789999999999999999999999999999999999998753
No 240
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.13 E-value=3.6e-06 Score=85.54 Aligned_cols=44 Identities=36% Similarity=0.546 Sum_probs=40.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.+..+|+|||||++||+||+.|++.|++|+|+|+.+.+||.++.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 35789999999999999999999999999999999999998753
No 241
>PRK13748 putative mercuric reductase; Provisional
Probab=98.12 E-value=2.7e-06 Score=89.16 Aligned_cols=41 Identities=37% Similarity=0.481 Sum_probs=37.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..+||+|||||.+|++||..|++.|++|+|+|++ .+||-|.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 4699999999999999999999999999999996 8999763
No 242
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.12 E-value=3.1e-06 Score=82.69 Aligned_cols=37 Identities=41% Similarity=0.413 Sum_probs=33.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVG 64 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~G 64 (507)
+.||+|||||++|+.||+.|++.|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 5799999999999999999999999999999876543
No 243
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.12 E-value=3.7e-06 Score=85.55 Aligned_cols=43 Identities=40% Similarity=0.665 Sum_probs=39.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
...++|+|||||++||++|+.|++.|++|+|+|+++.+||.+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4568999999999999999999999999999999999999764
No 244
>PTZ00058 glutathione reductase; Provisional
Probab=98.12 E-value=2.9e-06 Score=87.50 Aligned_cols=41 Identities=39% Similarity=0.519 Sum_probs=37.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
...+||+|||||.+|++||..+++.|.+|+|+|++ .+||.|
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtC 86 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTC 86 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccc
Confidence 36799999999999999999999999999999995 799976
No 245
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.12 E-value=5.4e-05 Score=73.72 Aligned_cols=36 Identities=25% Similarity=0.580 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRDR 62 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~~ 62 (507)
++++|+|||||.+||.+|..|.++- .+|+++|+++.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4688999999999999999999974 89999999764
No 246
>PRK07846 mycothione reductase; Reviewed
Probab=98.12 E-value=5.8e-05 Score=76.55 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
.||++|||||.+|.+||.. +.|.+|+|+|+ +.+||-|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcc
Confidence 3899999999999999876 45999999998 5788865
No 247
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.09 E-value=1.1e-06 Score=75.25 Aligned_cols=67 Identities=28% Similarity=0.553 Sum_probs=50.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEeccCCCeeeecCCceeeCCCCCCchHHHHHhcCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLP 103 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~ 103 (507)
...||+|||||-+||+|||+++++ ..+|.|+|++--+||.++ +|++.|...--..+..-+++++|++
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCCC
Confidence 367999999999999999999976 579999999988888542 2344333222234556678899987
No 248
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=4.3e-06 Score=87.70 Aligned_cols=43 Identities=42% Similarity=0.614 Sum_probs=40.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
.+.++|+|||+|.+||+||-.|.+.|+.|+|+|+++|+||.+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 4578999999999999999999999999999999999999874
No 249
>PLN02507 glutathione reductase
Probab=98.07 E-value=4.4e-06 Score=85.63 Aligned_cols=43 Identities=37% Similarity=0.376 Sum_probs=38.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec---------CCCCCceeE
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRVH 68 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~~ 68 (507)
..+|||+|||||.+|++||.++++.|++|+|+|+ .+.+||-|.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 3468999999999999999999999999999996 367899773
No 250
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.05 E-value=1e-05 Score=81.67 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=31.1
Q ss_pred ccCCcccCceeEEEEeeCCc-E-EEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIG-V-KVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~-v-~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|++++.++ |.++..+.++ + .|++.+|++++||.||=|++...
T Consensus 167 ~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 167 RGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp TT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred CCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 499988875 7777776554 3 48888999999999999999754
No 251
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.03 E-value=5.7e-06 Score=84.30 Aligned_cols=41 Identities=24% Similarity=0.476 Sum_probs=37.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecC--------CCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESR--------DRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~--------~~~GG~~ 67 (507)
+.|||+|||||.+|..||..+++. |.+|+|+|+. +.+||-|
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC 51 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC 51 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence 579999999999999999999997 8999999984 5799976
No 252
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.03 E-value=3.7e-05 Score=74.12 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=41.4
Q ss_pred HHHHHHHhc-cCCcccCceeEEEEeeCCcE-EEEEcCCcEEEcCEEEEecCch
Q 010542 245 LPVINTLAK-GLDIRLGHRVTKITRHYIGV-KVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v-~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
..+.+.|.+ |++|+++++|+.|..+++.+ .|.+++|+++.+|+||+|.+-.
T Consensus 177 kni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 177 KNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 344444443 89999999999999998864 4888899999999999999743
No 253
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.02 E-value=8.7e-06 Score=83.14 Aligned_cols=42 Identities=40% Similarity=0.618 Sum_probs=39.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..++|+|||||++||+||..|++.|++|+|+|+.+++||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999774
No 254
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.99 E-value=6.7e-06 Score=91.09 Aligned_cols=43 Identities=37% Similarity=0.563 Sum_probs=40.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3689999999999999999999999999999999999998854
No 255
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.99 E-value=2.3e-05 Score=76.69 Aligned_cols=41 Identities=27% Similarity=0.437 Sum_probs=37.1
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
...+||+|||||.+|.-||.-.+-+|.+|.++|+.|..-|-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 35699999999999999999999999999999998876663
No 256
>PLN02546 glutathione reductase
Probab=97.99 E-value=9.5e-06 Score=83.77 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=36.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec---------CCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES---------RDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---------~~~~GG~~ 67 (507)
..|||+|||||.+|+.||..+++.|++|+|+|+ ...+||-|
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC 127 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTC 127 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcc
Confidence 358999999999999999999999999999996 25677755
No 257
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.98 E-value=1e-05 Score=84.79 Aligned_cols=40 Identities=33% Similarity=0.547 Sum_probs=36.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-DRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-~~~GG~~ 67 (507)
+|||+|||||.+|.+||..+++.|.+|+|+|+. +.+||-|
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 689999999999999999999999999999974 4789966
No 258
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=3.7e-05 Score=75.10 Aligned_cols=40 Identities=25% Similarity=0.406 Sum_probs=34.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--C-CeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA--S-FKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~--G-~~V~vlE~~~~~GG~~ 67 (507)
+++|+|||+|.+|+++|.+|.+. . ..|.|+|+....|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 57999999999999999999986 1 2399999999988743
No 259
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.97 E-value=7.9e-06 Score=80.41 Aligned_cols=37 Identities=41% Similarity=0.478 Sum_probs=33.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
.||+|||||++|+.||+.|++.|++|+|+|+.+..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999876644
No 260
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.95 E-value=9.5e-06 Score=76.00 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=33.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
.....||+|||||++|.+-|+.|+|+|.+|+|+|+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 467899999999999999999999999999999994
No 261
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.95 E-value=8.2e-05 Score=72.68 Aligned_cols=33 Identities=36% Similarity=0.620 Sum_probs=30.6
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
||+|||+|++||++|..|.+. ++|+|+=|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999998 999999996653
No 262
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.95 E-value=8.5e-05 Score=74.20 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=36.0
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
+|++++++++|++|.. ++.+.+++.+|+++.+|.||++++..
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGIS 240 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCC
Confidence 4899999999999976 55667888889899999999999764
No 263
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.95 E-value=1.3e-05 Score=83.70 Aligned_cols=44 Identities=32% Similarity=0.510 Sum_probs=40.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
.....+|+|||||++||++|+.|++.|++|+|+|+.+.+||.++
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 34678999999999999999999999999999999999999764
No 264
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00016 Score=68.39 Aligned_cols=44 Identities=27% Similarity=0.376 Sum_probs=41.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEec
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (507)
+.+||+|+|-|+.=..-+..|+.+|.+|+.+|+++..||-.+|.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasl 46 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASL 46 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccce
Confidence 45999999999999999999999999999999999999988774
No 265
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.94 E-value=1.5e-05 Score=81.23 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=35.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
+||+|||+|++|+++|+.|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 6999999999999999999999999999999988876
No 266
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.93 E-value=1.9e-05 Score=77.57 Aligned_cols=45 Identities=31% Similarity=0.395 Sum_probs=40.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEe
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s 69 (507)
.....+|+|||||++||++|..|++.|++|+|+|+.+.+||.+..
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~ 59 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF 59 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence 345679999999999999999999999999999999999997643
No 267
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.93 E-value=9.8e-06 Score=74.38 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (507)
+++||+|||||++||+||..|+++|+++.|+-.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 479999999999999999999999999999987
No 268
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.93 E-value=2.3e-05 Score=58.52 Aligned_cols=34 Identities=41% Similarity=0.682 Sum_probs=32.1
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
+|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999998865
No 269
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.93 E-value=8.4e-06 Score=78.05 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=29.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDRV 63 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~~ 63 (507)
||+||||||.+|+.+|.+|+++| .+|+|+|+....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 69999999999999999999997 699999996543
No 270
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.91 E-value=4.1e-05 Score=71.53 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=39.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCceeEe
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~s 69 (507)
...++.+-|||+|++||++|.+|-+. |.++.|+|.-+..||..-.
T Consensus 19 ~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 19 NVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 35678899999999999999999886 6799999999999997643
No 271
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.90 E-value=1.4e-05 Score=71.58 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
||+|||||++||+||..|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998865
No 272
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=72.69 Aligned_cols=42 Identities=40% Similarity=0.724 Sum_probs=37.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC--CCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--DRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~--~~~GG~~ 67 (507)
....||+|||||++||.||..|+.+|++|+|+|+. ..+||.+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 35789999999999999999999999999999996 4567755
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.85 E-value=0.00018 Score=71.41 Aligned_cols=43 Identities=23% Similarity=0.473 Sum_probs=37.8
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|++++++++|++|..+++.+.+++.+|+++.+|.||+|++..
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCC
Confidence 3889999999999998777777888899899999999999764
No 274
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.00087 Score=62.36 Aligned_cols=43 Identities=35% Similarity=0.448 Sum_probs=39.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..+.+|..|||||-.|+++|.+.++.|.+|.|+|..-++||-|
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTC 59 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTC 59 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceE
Confidence 3468999999999999999999999999999999988999966
No 275
>PRK13984 putative oxidoreductase; Provisional
Probab=97.83 E-value=2.9e-05 Score=81.95 Aligned_cols=44 Identities=30% Similarity=0.535 Sum_probs=40.5
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..+..+|+|||||.+||+||..|++.|++|+|||+.+.+||.+.
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 35678999999999999999999999999999999999999764
No 276
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.80 E-value=2.2e-05 Score=77.97 Aligned_cols=35 Identities=37% Similarity=0.513 Sum_probs=32.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+++||+|||||++|++||+.|+++|++|+|+|+..
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 36899999999999999999999999999999863
No 277
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.80 E-value=2.4e-05 Score=79.96 Aligned_cols=40 Identities=40% Similarity=0.585 Sum_probs=35.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC-----C---CCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR-----D---RVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~-----~---~~GG~~ 67 (507)
.+||+|||||.+|+.||..+++.|++|+|+|+. . .+||-|
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc 49 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTC 49 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccc
Confidence 489999999999999999999999999999973 1 578865
No 278
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.78 E-value=2.6e-05 Score=79.39 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=34.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
++|+|||||.+|++||..|++.|++|+|+|++ .+||-|
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c 38 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTC 38 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccC
Confidence 38999999999999999999999999999995 577765
No 279
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.76 E-value=2.8e-05 Score=83.93 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=31.9
Q ss_pred CeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~ 62 (507)
++|+|||||++||+||..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 5899999999999999999998 899999999875
No 280
>PRK07846 mycothione reductase; Reviewed
Probab=97.76 E-value=0.00027 Score=71.73 Aligned_cols=45 Identities=31% Similarity=0.453 Sum_probs=37.9
Q ss_pred hccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 252 ~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.+|++++++++|++|+.+++++.+++.+|+++.+|.||+|++...
T Consensus 218 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 218 SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence 347889999999999877777778888888999999999997543
No 281
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.73 E-value=0.00029 Score=71.97 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=36.7
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCC--cEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGG--KTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g--~~~~ad~VI~a~p~~ 295 (507)
.|++++++++|++|+.+++++.+++.+| +++.+|.||+|++..
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCc
Confidence 4889999999999998888888777777 479999999999754
No 282
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.73 E-value=0.00035 Score=71.38 Aligned_cols=43 Identities=30% Similarity=0.358 Sum_probs=37.5
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|++++++++|++|..+++++.+++.+|+++.+|.||+|++..
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRT 271 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCC
Confidence 3889999999999998777787877788889999999999754
No 283
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00098 Score=62.58 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=41.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEec
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTD 70 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~ 70 (507)
..+||+|+|-|+.=..-+..|+-+|++|+.+|+++..|+-.+|.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asl 48 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASL 48 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccce
Confidence 47999999999999999999999999999999999999988774
No 284
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.69 E-value=6.4e-05 Score=70.54 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=39.0
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCceeEe
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVGGRVHT 69 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~s 69 (507)
+..+.|.|||+|+||+++|++|.++ +..|+|+|+.+.++|..+.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 3456999999999999999999985 6899999999999998755
No 285
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=0.00037 Score=71.22 Aligned_cols=44 Identities=39% Similarity=0.547 Sum_probs=36.9
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~~ 296 (507)
.|++++++++|++|+.+++++.+++.+| +++.+|.||+|++...
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 4899999999999998877777777666 6799999999997543
No 286
>PRK02106 choline dehydrogenase; Validated
Probab=97.68 E-value=4.7e-05 Score=79.59 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=33.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHh-CCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHD-ASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~-~G~~V~vlE~~~ 61 (507)
...+|+||||||.+|+.+|.+|++ .|++|+|||+..
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456999999999999999999999 799999999974
No 287
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.66 E-value=2.2e-05 Score=70.75 Aligned_cols=42 Identities=26% Similarity=0.609 Sum_probs=37.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCC------CeEEEEecCCCCCcee
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDAS------FKVVLLESRDRVGGRV 67 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G------~~V~vlE~~~~~GG~~ 67 (507)
....+|+||||||.|.++||+|++.+ ..|+|||+....||..
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS 55 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS 55 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence 44588999999999999999999986 7899999988888854
No 288
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.64 E-value=5.3e-05 Score=78.99 Aligned_cols=33 Identities=30% Similarity=0.570 Sum_probs=30.7
Q ss_pred eEEEECccHHHHHHHHHHH----hCCCeEEEEecCCC
Q 010542 30 SVIVIGAGMAGVAAARALH----DASFKVVLLESRDR 62 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~----~~G~~V~vlE~~~~ 62 (507)
||+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999765
No 289
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.63 E-value=0.00044 Score=70.27 Aligned_cols=44 Identities=39% Similarity=0.503 Sum_probs=37.5
Q ss_pred hccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 252 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 252 ~~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
..|+++++++.|++|+.+++++.+++.+|+++.+|.||+|++..
T Consensus 221 ~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 221 KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRV 264 (452)
T ss_pred hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccC
Confidence 34789999999999998777777887788889999999999754
No 290
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.61 E-value=0.011 Score=61.42 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=35.6
Q ss_pred hccCCcccCceeEEEEeeCCcEE-EEEc---CCc--EEEcCEEEEecCchh
Q 010542 252 AKGLDIRLGHRVTKITRHYIGVK-VTVE---GGK--TFVADAVVVAVPLGV 296 (507)
Q Consensus 252 ~~g~~i~~~~~V~~I~~~~~~v~-v~~~---~g~--~~~ad~VI~a~p~~~ 296 (507)
..|++|+++++|++|..+++++. |++. +|+ ++.|+.||+|+++..
T Consensus 140 ~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 140 EHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 34999999999999999888653 4432 343 689999999999865
No 291
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.00049 Score=68.11 Aligned_cols=41 Identities=39% Similarity=0.415 Sum_probs=34.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
+.+||+|||||.||+-||+..++.|.+++++=-+-..=|.+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~m 43 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEM 43 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeec
Confidence 45999999999999999999999999999887763333344
No 292
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.59 E-value=0.00055 Score=69.88 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=37.2
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|++++++++|++|+.+++++.+++.+|+++.+|.||++++..
T Consensus 231 ~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 231 RGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred CCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCC
Confidence 3899999999999987777787887888899999999998754
No 293
>PRK06116 glutathione reductase; Validated
Probab=97.56 E-value=0.00093 Score=68.02 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=36.7
Q ss_pred ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|++++++++|++|+.++++ +.+++.+|+++.+|.||+|++..
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCC
Confidence 48999999999999876555 77888888899999999999753
No 294
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.56 E-value=0.00078 Score=68.29 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=32.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 458999999999999999999999999999997653
No 295
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.55 E-value=0.00095 Score=67.79 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 36899999999999999999999999999998654
No 296
>PLN02507 glutathione reductase
Probab=97.51 E-value=0.0012 Score=67.87 Aligned_cols=43 Identities=30% Similarity=0.523 Sum_probs=37.4
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|+++++++.|++|+.+++++.+.+.+|+++.+|.||++++..
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCC
Confidence 3899999999999998777777888888889999999999754
No 297
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.50 E-value=0.0011 Score=67.26 Aligned_cols=43 Identities=35% Similarity=0.474 Sum_probs=37.0
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|+++++++.|++|...++++.+++.+|+++.+|.||+|++..
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCC
Confidence 4899999999999987767777777788889999999999753
No 298
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.44 E-value=0.00037 Score=75.59 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.2
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|++++++++|++|+.++. .|++.+|+++.||++|+||+...
T Consensus 67 ~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 67 HGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred CCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence 4889999999999988654 46667888899999999998653
No 299
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.43 E-value=0.00015 Score=71.26 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=41.3
Q ss_pred HHHHHHHhc-cCCcccCceeEEEEeeCCcEE-EEEcCC--cEEEcCEEEEecCchh
Q 010542 245 LPVINTLAK-GLDIRLGHRVTKITRHYIGVK-VTVEGG--KTFVADAVVVAVPLGV 296 (507)
Q Consensus 245 ~~l~~~l~~-g~~i~~~~~V~~I~~~~~~v~-v~~~~g--~~~~ad~VI~a~p~~~ 296 (507)
+.|.+++.+ |+++..+++|.++..++++++ |.+.++ .++.||+||+|++...
T Consensus 267 ~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~ 322 (419)
T TIGR03378 267 EALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFF 322 (419)
T ss_pred HHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCc
Confidence 455555554 889999999999999988876 555665 3899999999998873
No 300
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.42 E-value=0.0013 Score=67.30 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 368999999999999999999999999999986543
No 301
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.41 E-value=0.00017 Score=67.88 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=39.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeE
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVH 68 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~ 68 (507)
..+|++|||+|++|-.||...++.|++...+|++..+||-|-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 579999999999999999999999999999999999999763
No 302
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.40 E-value=0.0017 Score=66.55 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 36899999999999999999999999999998654
No 303
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.0017 Score=66.47 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 36899999999999999999999999999997553
No 304
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00016 Score=74.77 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=33.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
...++|++|||+|.+|.+.|.+|++.|++|+|||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 457899999999999999999999889999999995
No 305
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.38 E-value=0.0013 Score=71.33 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=35.4
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 294 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 294 (507)
.|+++++++.|++|..++....|++.+|+++.+|.||++++.
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 389999999999998655445678889999999999999974
No 306
>PRK06370 mercuric reductase; Validated
Probab=97.37 E-value=0.0021 Score=65.67 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 468999999999999999999999999999997653
No 307
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.34 E-value=0.0023 Score=65.53 Aligned_cols=35 Identities=31% Similarity=0.588 Sum_probs=32.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 46899999999999999999999999999999764
No 308
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.30 E-value=0.00028 Score=71.47 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=32.5
Q ss_pred CCeEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA--SFKVVLLESRDRVG 64 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~~G 64 (507)
+++|+|||||++|++||..|++. +.+|+|+|+++..+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 35899999999999999999886 57999999987654
No 309
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.30 E-value=0.0002 Score=74.44 Aligned_cols=32 Identities=34% Similarity=0.496 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~ 61 (507)
|+||||||.+|+..|.+|+++| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 6999999964
No 310
>PLN02785 Protein HOTHEAD
Probab=97.30 E-value=0.00029 Score=73.44 Aligned_cols=41 Identities=34% Similarity=0.549 Sum_probs=34.9
Q ss_pred cCCCCCCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 20 NAGKGQARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 20 ~~~~~~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++..+....+|+||||||.+|+..|.+|++ +.+|+|||+..
T Consensus 47 ~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 47 SSSSGGDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccccccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 334444567999999999999999999999 59999999964
No 311
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.29 E-value=0.0024 Score=65.14 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+++|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 35899999999999999999999999999998654
No 312
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.29 E-value=0.0026 Score=64.75 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=31.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||.+|+-+|..|++.|.+|+++|+.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 46899999999999999999999999999997553
No 313
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.28 E-value=0.00016 Score=70.12 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=27.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~~ 62 (507)
.+|+++||.|+++|+-|..|.+.+ .+++.||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 479999999999999999999886 89999998764
No 314
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.28 E-value=0.0031 Score=64.40 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=32.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 468999999999999999999999999999986543
No 315
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.25 E-value=0.0034 Score=59.98 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=31.6
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~ 61 (507)
.+.+||+|||||+.|++.|..|... -++|.|+|..+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 4589999999999999999999865 37999999973
No 316
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.25 E-value=0.0034 Score=63.69 Aligned_cols=42 Identities=31% Similarity=0.432 Sum_probs=35.2
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|++++++++|++|+.+++.+.+++.++ ++.+|.||+|++..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~ 253 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQ 253 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCC
Confidence 4899999999999998777777776666 68999999998754
No 317
>PRK14727 putative mercuric reductase; Provisional
Probab=97.24 E-value=0.0042 Score=63.73 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=36.1
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|++++++++|++|+.+++.+.+++.++ ++.+|.||+|++...
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence 4899999999999988777777777666 789999999998643
No 318
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.22 E-value=0.0033 Score=63.53 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=31.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||.+|+.+|..|++.|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 46899999999999999999999999999998654
No 319
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.19 E-value=0.0039 Score=64.13 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=29.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (507)
.+++|||||..|+-.|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 4899999999999999999999999999986
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.19 E-value=0.00044 Score=69.09 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=34.3
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.++++++++.|.+|..++. .|.+.+|+++.||++|+||+...
T Consensus 71 ~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 71 NNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred CCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence 4889999999999988764 34556788999999999998653
No 321
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.18 E-value=0.0033 Score=68.41 Aligned_cols=42 Identities=12% Similarity=0.259 Sum_probs=34.8
Q ss_pred ccCCcccCceeEEEEeeCC--cEEEEEcCCcEEEcCEEEEecCc
Q 010542 253 KGLDIRLGHRVTKITRHYI--GVKVTVEGGKTFVADAVVVAVPL 294 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~--~v~v~~~~g~~~~ad~VI~a~p~ 294 (507)
.|+++++++.|++|..+++ ...+.+.+|+++.+|.||+|++.
T Consensus 200 ~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGI 243 (847)
T ss_pred CCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCc
Confidence 3899999999999986532 34577889999999999999974
No 322
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.18 E-value=0.00053 Score=69.11 Aligned_cols=38 Identities=26% Similarity=0.626 Sum_probs=33.6
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..++++|+|||||.+|+++|..|.+.+.+|+|+|+++.
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 34678999999999999999999877889999999764
No 323
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.17 E-value=0.003 Score=64.56 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 36899999999999999999999999999999764
No 324
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.15 E-value=0.005 Score=63.00 Aligned_cols=43 Identities=33% Similarity=0.404 Sum_probs=35.3
Q ss_pred ccCCcccCceeEEEEeeCCc-EEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~-v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
+|+++++++.|++|..++++ ..+++.+|+++.+|.||+|++..
T Consensus 244 ~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 287 (486)
T TIGR01423 244 NGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRV 287 (486)
T ss_pred cCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCC
Confidence 48999999999999876544 56777778889999999999743
No 325
>PRK14694 putative mercuric reductase; Provisional
Probab=97.14 E-value=0.0052 Score=62.83 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=35.0
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCchh
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGV 296 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 296 (507)
.|+++++++.|++|+.+++.+.+++.++ ++.+|.||+|++...
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence 4899999999999988776666766555 799999999997543
No 326
>PRK13748 putative mercuric reductase; Provisional
Probab=97.12 E-value=0.0051 Score=64.57 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=35.3
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|+++++++.|++|+.+++.+.+.+.++ ++.+|.||+|++..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCC
Confidence 4899999999999988777777776666 79999999999754
No 327
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0005 Score=63.43 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=32.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
+...|.|||||++|.-|||.|+++|..|.++|-.+.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 356799999999999999999999999999998654
No 328
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0046 Score=60.10 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=31.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
...+||+|||||.||.-||...++.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56899999999999999999999999988877765
No 329
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.06 E-value=0.0058 Score=62.59 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=34.7
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCC---cEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGG---KTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g---~~~~ad~VI~a~p~~ 295 (507)
+|+++++++.+++|...++.+.++..++ +++.+|.||+|++..
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 4899999999999987766666666555 379999999999753
No 330
>PTZ00058 glutathione reductase; Provisional
Probab=96.90 E-value=0.011 Score=61.37 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 56899999999999999999999999999998654
No 331
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.87 E-value=0.0012 Score=66.41 Aligned_cols=40 Identities=43% Similarity=0.683 Sum_probs=37.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCcee
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRV 67 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 67 (507)
..+++|||+|..||.+|..|+++|++|+|+|+.+++||..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 5899999999999999999999999999999999998854
No 332
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.76 E-value=0.0096 Score=60.03 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.5
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCc
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPL 294 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 294 (507)
.|++++++++|++|.. + .|.+++|+++.+|.||++++.
T Consensus 241 ~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 LGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCC
Confidence 3899999999999874 3 355678989999999999874
No 333
>PLN02546 glutathione reductase
Probab=96.72 E-value=0.017 Score=59.95 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 46899999999999999999999999999998654
No 334
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0019 Score=59.97 Aligned_cols=35 Identities=34% Similarity=0.463 Sum_probs=32.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (507)
.+-.||.+|||||-+||+||.+.+..|.+|.++|.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 45689999999999999999999999999999997
No 335
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.65 E-value=0.0023 Score=63.47 Aligned_cols=34 Identities=18% Similarity=0.477 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~ 61 (507)
+++|+|||||++|+++|..|.+.+ .+|+|+++++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 468999999999999999998864 5899999865
No 336
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.51 E-value=0.0035 Score=53.55 Aligned_cols=32 Identities=38% Similarity=0.472 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|+|||||-.|.+.|..|+++|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999864
No 337
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.49 E-value=0.092 Score=51.42 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=38.5
Q ss_pred cchHHHHHHHh-----ccCCcccCceeEEEEeeCCcEEEEEcCC-cEEEcCEEEEecCc
Q 010542 242 RGYLPVINTLA-----KGLDIRLGHRVTKITRHYIGVKVTVEGG-KTFVADAVVVAVPL 294 (507)
Q Consensus 242 ~G~~~l~~~l~-----~g~~i~~~~~V~~I~~~~~~v~v~~~~g-~~~~ad~VI~a~p~ 294 (507)
.-.++++++|. .|++|+++++|++| +++++.+.+..+ .++.||+||+|++-
T Consensus 83 ~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 83 MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCC
Confidence 34556666664 39999999999999 445577776543 47999999999974
No 338
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.36 E-value=0.052 Score=52.73 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=30.8
Q ss_pred cCCcccCceeEEEEeeCC-cEEEEEcCC-----cEEEcCEEEEecCch
Q 010542 254 GLDIRLGHRVTKITRHYI-GVKVTVEGG-----KTFVADAVVVAVPLG 295 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~-~v~v~~~~g-----~~~~ad~VI~a~p~~ 295 (507)
.++++.+++|++++..++ ++.+++.+. .++.+|.||+||+..
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---EE
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 457899999999999884 898887652 378999999999753
No 339
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.32 E-value=0.004 Score=61.47 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=29.0
Q ss_pred eEEEECccHHHHHHHHHHHhC---CCeEEEEecCCC
Q 010542 30 SVIVIGAGMAGVAAARALHDA---SFKVVLLESRDR 62 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~---G~~V~vlE~~~~ 62 (507)
+|+|||||++|+++|..|.++ +.+|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999754 689999999765
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.30 E-value=0.0049 Score=54.03 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=27.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++|+|||.|..||..|..|+++|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 579999999999999999999999999999865
No 341
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0033 Score=57.47 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=27.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC-------CeEEEEec
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDAS-------FKVVLLES 59 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G-------~~V~vlE~ 59 (507)
++++|+|||+|+.||++|+.|.+.+ .+|+|++-
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 4689999999999999999998843 57888874
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.25 E-value=0.0072 Score=62.11 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+..+|+|||+|.+|+++|..|+++|++|+++|+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34689999999999999999999999999999765
No 343
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.21 E-value=0.0075 Score=52.70 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=28.1
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|+|||||..|..-|..++..|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999853
No 344
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.003 Score=58.91 Aligned_cols=40 Identities=33% Similarity=0.496 Sum_probs=32.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCce
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGR 66 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~ 66 (507)
....|||+|||||++|-+||.+-+++|.+.-|+- +|+||.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQ 247 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQ 247 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCe
Confidence 4568999999999999999999999998765542 466664
No 345
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.98 E-value=0.0082 Score=61.33 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=31.4
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
+|+|||+|.+|++||..|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987653
No 346
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.93 E-value=0.0097 Score=60.63 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=33.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEecCCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLESRDR 62 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~~~~ 62 (507)
....||.||||||-||..-|.+|++. ..+|+|+|+...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 46789999999999999999999997 579999999543
No 347
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.84 E-value=0.012 Score=64.16 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=32.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDA----SFKVVLLESRDRVG 64 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~----G~~V~vlE~~~~~G 64 (507)
+.+|+|||+|++|+.+|..|.+. +++|+|++++++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 35899999999999999999764 47999999998864
No 348
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.81 E-value=0.042 Score=52.26 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=34.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCc
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGG 65 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG 65 (507)
..+.+|||||+.||-.+---.+.|-+|+++|.-+.+||
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcc
Confidence 46799999999999999999999999999999887766
No 349
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.012 Score=56.53 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=31.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++|+|||+|..|.+.|..|+++|++|++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999865
No 350
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.021 Score=49.97 Aligned_cols=42 Identities=33% Similarity=0.452 Sum_probs=35.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEec---C-CCCCceeEe
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES---R-DRVGGRVHT 69 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~---~-~~~GG~~~s 69 (507)
+-+|+|||+|+++-+||.+++++..+-+|||- + --+||.+.|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 45899999999999999999999999999997 2 233666655
No 351
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.56 E-value=0.021 Score=48.35 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=29.2
Q ss_pred EEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
|+|||+|..|+..|++|++.|++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999854
No 352
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.39 E-value=0.024 Score=53.66 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|||+|..|...|..|++.|++|+++|.++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3489999999999999999999999999999864
No 353
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.021 Score=51.85 Aligned_cols=33 Identities=36% Similarity=0.656 Sum_probs=31.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++++|||+|-.|.+.|..|.+.|++|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999999999999999999965
No 354
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.26 E-value=0.026 Score=53.59 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|||+|..|.+.|..|+++|++|++++.+.
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3579999999999999999999999999999753
No 355
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.25 E-value=0.032 Score=53.68 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++.++|+|||+|..|.+-|+.|+++|++|+++-++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 345789999999999999999999999999998853
No 356
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.23 E-value=0.032 Score=53.16 Aligned_cols=34 Identities=32% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|||+|..|...|..|+++|++|++++.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4679999999999999999999999999999853
No 357
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.23 E-value=0.029 Score=56.36 Aligned_cols=42 Identities=43% Similarity=0.557 Sum_probs=36.7
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCc--EEEcCEEEEecCc
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGK--TFVADAVVVAVPL 294 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~--~~~ad~VI~a~p~ 294 (507)
.|++++++++|++++..++++.+++++|+ ++++|.|++|++-
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCC
Confidence 37899999999999998887888888876 6899999999974
No 358
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.033 Score=53.29 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 359
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.21 E-value=0.021 Score=52.68 Aligned_cols=46 Identities=37% Similarity=0.589 Sum_probs=39.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC--------CCCCceeEecc
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR--------DRVGGRVHTDY 71 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~--------~~~GG~~~s~~ 71 (507)
...-+|+|||||+.|.-||.....-|.+|+|+|.+ +..|||..+..
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 35678999999999999999999999999999997 45677766643
No 360
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.19 E-value=0.024 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++|.|||.|..||++|..|++.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999999853
No 361
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.12 E-value=0.029 Score=54.84 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+++|+|||+|..|.+.|+.|+++|++|++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 468999999999999999999999999999974
No 362
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.09 E-value=0.04 Score=47.56 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=30.3
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
-...+|+|+|+|.+|+.||..|...|.+|+++|...
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 345899999999999999999999999999999853
No 363
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.09 E-value=0.037 Score=49.41 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=30.7
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.-+..+|+|||+|.++.-+|..|++.|.+|+++=+++
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3456899999999999999999999999999998754
No 364
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.07 E-value=0.028 Score=56.94 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l 183 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI 183 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 368999999999999999999999999999997654
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.033 Score=56.74 Aligned_cols=35 Identities=34% Similarity=0.655 Sum_probs=32.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+.++|+|||+|..|+++|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999964
No 366
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.04 E-value=0.18 Score=49.71 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=31.7
Q ss_pred ccCCcccCceeEEEEeeCCcEEEEEcCCcEEEcCEEEEecCch
Q 010542 253 KGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLG 295 (507)
Q Consensus 253 ~g~~i~~~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 295 (507)
.|+++++++.|++|.. + .+++.+|+++.+|.||+|++..
T Consensus 204 ~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred CCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCC
Confidence 3889999999999853 2 4566788899999999999854
No 367
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.02 E-value=0.033 Score=56.89 Aligned_cols=36 Identities=36% Similarity=0.599 Sum_probs=33.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 468999999999999999999999999999997654
No 368
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.01 E-value=0.028 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+|+|||+|..|...|..|+++|++|++++.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999864
No 369
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.89 E-value=0.035 Score=55.55 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.++|+|||.|..|++.|..|+++|++|++++.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 4689999999999999999999999999999854
No 370
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.89 E-value=0.23 Score=52.04 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=34.9
Q ss_pred HHHHHHHh-ccCCcccCceeEEEEee-CCcEE-E---EEcCCc--EEEcCEEEEecCc
Q 010542 245 LPVINTLA-KGLDIRLGHRVTKITRH-YIGVK-V---TVEGGK--TFVADAVVVAVPL 294 (507)
Q Consensus 245 ~~l~~~l~-~g~~i~~~~~V~~I~~~-~~~v~-v---~~~~g~--~~~ad~VI~a~p~ 294 (507)
..|.+.+. .|++|+.++.++++..+ +++|. + ...+|+ .+.|+.||+||+-
T Consensus 130 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 130 HTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 34444333 38899999999999875 55554 2 234565 5789999999974
No 371
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.67 E-value=0.055 Score=51.62 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=31.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||+|..|...|..|++.|++|.++|.+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 34679999999999999999999999999999854
No 372
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.63 E-value=0.056 Score=46.43 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+++|.|||-|..|...|.+|.++|++|.+++++.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 4689999999999999999999999999999863
No 373
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.63 E-value=0.056 Score=52.46 Aligned_cols=34 Identities=32% Similarity=0.309 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+++|+|||+|..|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999853
No 374
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.62 E-value=0.049 Score=52.15 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
.++|+|||+|-.|...|++|++.|.+|+++.+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 467999999999999999999999999999985
No 375
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.60 E-value=0.067 Score=45.95 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCCCCeEEEECccH-HHHHHHHHHHhCCCeEEEEecC
Q 010542 25 QARSPSVIVIGAGM-AGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 25 ~~~~~dv~IIGaGi-aGL~aA~~L~~~G~~V~vlE~~ 60 (507)
.-...+|+|||+|- +|..+|.+|.+.|.+|+|..+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 35679999999995 6999999999999999999975
No 376
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.56 E-value=0.054 Score=51.88 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~ 61 (507)
++|+|||+|..|.++|+.|+.+| .+|.++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999999 4899999864
No 377
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.55 E-value=0.049 Score=52.20 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=29.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
++|+|||+|-.|.+.|..|++.|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999984
No 378
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.51 E-value=0.054 Score=56.09 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
...+|+|||||.+|+-+|..|++.|.+|+|+|..+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 356999999999999999999999999999997543
No 379
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.44 E-value=0.053 Score=51.33 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=30.6
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+|+|||+|..|.+.|..|+++|++|+++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 579999999999999999999999999999754
No 380
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.43 E-value=0.05 Score=51.76 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=30.8
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999854
No 381
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.42 E-value=0.064 Score=51.21 Aligned_cols=33 Identities=33% Similarity=0.564 Sum_probs=30.0
Q ss_pred CeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (507)
++|+|||+|..|++.|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 589999999999999999999887 899999843
No 382
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.42 E-value=0.024 Score=50.98 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=27.4
Q ss_pred eEEEECccHHHHHHHHHHHhC--CCeEEEEecCCC
Q 010542 30 SVIVIGAGMAGVAAARALHDA--SFKVVLLESRDR 62 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~--G~~V~vlE~~~~ 62 (507)
+.+||||||+|.+||-.|+.. ..+|+++-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999975 457888887553
No 383
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.37 E-value=0.074 Score=47.48 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+..+|+|||||-+|+..+..|.+.|.+|+|+..+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35689999999999999999999999999998743
No 384
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.36 E-value=0.054 Score=51.95 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=29.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (507)
++|+|||+|..|.+.|+.|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4699999999999999999999999999987
No 385
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.31 E-value=0.067 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|||+|..|.+.|..|++.|++|++++.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4679999999999999999999999999999753
No 386
>PRK04148 hypothetical protein; Provisional
Probab=94.30 E-value=0.06 Score=43.89 Aligned_cols=35 Identities=17% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
+..+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 34789999999 999999999999999999998764
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.29 E-value=0.067 Score=41.86 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+...|+|||||-.|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5688999999999999999999999999999886
No 388
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.23 E-value=0.059 Score=57.00 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 357999999999999999999999999999997764
No 389
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.21 E-value=0.044 Score=50.81 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=32.3
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhC-CC-eEEEEecCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDA-SF-KVVLLESRD 61 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~-G~-~V~vlE~~~ 61 (507)
..+.++|+|||||-+|++.|..+.++ |. +|.|+|-.+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 35789999999999999999999876 54 799999864
No 390
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.16 E-value=0.074 Score=51.54 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++|+|||+|..|...|..|++.|++|++++++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 579999999999999999999999999999853
No 391
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.10 E-value=0.058 Score=54.13 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
++|.|||.|..|+..|..|+++|++|++++.+..
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 3699999999999999999999999999998653
No 392
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.09 E-value=1.6 Score=45.72 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=35.7
Q ss_pred HHHHHHHh-ccCCcccCceeEEEEeeCCcEE-EE---EcCCc--EEEcCEEEEecCc
Q 010542 245 LPVINTLA-KGLDIRLGHRVTKITRHYIGVK-VT---VEGGK--TFVADAVVVAVPL 294 (507)
Q Consensus 245 ~~l~~~l~-~g~~i~~~~~V~~I~~~~~~v~-v~---~~~g~--~~~ad~VI~a~p~ 294 (507)
..|.+.+. .|++|+.++.|+++..+++++. +. ..+|+ .+.|+.||+|++=
T Consensus 123 ~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 123 HTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred HHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 34444443 3889999999999988776654 22 23564 5789999999964
No 393
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.08 E-value=0.091 Score=50.43 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+.++|.|||+|..|.+.|..|+++|++|.++.++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45689999999999999999999999999999864
No 394
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.04 E-value=0.062 Score=53.46 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=33.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
.++|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 688999999999999999999999999999976554
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.99 E-value=0.081 Score=54.86 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=31.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||||.+|+-+|..|++.|.+|+|+++.+
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 45799999999999999999999999999998754
No 396
>PRK10262 thioredoxin reductase; Provisional
Probab=93.90 E-value=0.094 Score=50.71 Aligned_cols=35 Identities=37% Similarity=0.496 Sum_probs=32.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||+|.+|+-.|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 35689999999999999999999999999999864
No 397
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.88 E-value=0.087 Score=55.11 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=33.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRV 63 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~ 63 (507)
...+|+|||||.+|+-.|..|++.|.+|+++++.+++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 4578999999999999999999999999999997754
No 398
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.84 E-value=0.13 Score=42.52 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFK-VVLLESR 60 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~ 60 (507)
-+..+++|||+|=+|-++++.|.+.|.+ |+|+-|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3578999999999999999999999985 9999875
No 399
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.79 E-value=0.094 Score=53.31 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999999854
No 400
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.78 E-value=0.09 Score=54.01 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=30.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
++|+|||+|..|...|..|+++|++|+|++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 57999999999999999999999999999985
No 401
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.76 E-value=0.12 Score=46.15 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+..+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4678999999999999999999999999999764
No 402
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.69 E-value=0.069 Score=51.19 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=44.0
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCceeEeccCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDRVGGRVHTDYSF 73 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~~GG~~~s~~~~ 73 (507)
.+..+||+|||-|+.-...|..-++.|.+|+=+|.+...||...|+...
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 3578999999999999999999999999999999999999998876543
No 403
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.094 Score=53.53 Aligned_cols=34 Identities=29% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 404
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.62 E-value=0.11 Score=46.14 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999998 69999984
No 405
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.53 E-value=0.099 Score=52.99 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC--CeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS--FKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~ 60 (507)
+++|+|||+|..||..|..|+++| ++|+.+|.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 367999999999999999999985 789999974
No 406
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.51 E-value=0.1 Score=50.80 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=31.1
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC-CeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS-FKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~ 60 (507)
+++|+|||||-.|.++|+.|++.| .+|+|.+++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 478999999999999999999999 899999996
No 407
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.38 E-value=0.16 Score=43.24 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (507)
+..+|+|||||-.|+.-|..|.+.|++|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 467899999999999999999999999999953
No 408
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.30 E-value=0.14 Score=49.11 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (507)
+++|+|||+|..|.+.|+.|+..|+ +|.++|.+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 3689999999999999999999876 999999854
No 409
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.28 E-value=0.14 Score=48.89 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 34689999999999999999999999999999854
No 410
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.26 E-value=0.12 Score=53.04 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
-.+|+|||+|..|...|..|+++|++|+|+|++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4569999999999999999999999999999863
No 411
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.25 E-value=0.15 Score=50.10 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
...+|+|||+|..|+.+|..|.+.|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567999999999999999999999999999985
No 412
>PRK12831 putative oxidoreductase; Provisional
Probab=93.24 E-value=0.13 Score=52.50 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||||.+|+-+|..|.+.|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45799999999999999999999999999999744
No 413
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.24 E-value=0.13 Score=49.92 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=29.9
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
++|.|||+|-.|.+-|..|+++|++|+++.++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36999999999999999999999999999984
No 414
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.20 E-value=0.12 Score=51.24 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=28.3
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988885 99999999864
No 415
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.20 E-value=0.13 Score=50.56 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=30.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~ 61 (507)
...|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999999999999999986 99998743
No 416
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.18 E-value=0.19 Score=41.83 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=29.6
Q ss_pred CeEEEECc-cHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542 29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (507)
++|+|||| |-.|.+.|+.|...+. ++.+++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 48999999 9999999999999874 799999863
No 417
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.09 E-value=0.13 Score=48.51 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.8
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|.|||.|..|.+.|..|+++|++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999753
No 418
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.05 E-value=0.19 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=32.5
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRDR 62 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~~ 62 (507)
-+..+|+|||||..|.+.|+.|+..|+ +|.|+|.+..
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 345799999999999999999999996 8999998654
No 419
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.02 E-value=0.16 Score=51.62 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=32.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+|+|+|+|-+|+++|..|+++|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 420
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.02 E-value=0.14 Score=52.27 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=31.3
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|+|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4579999999999999999999999999999764
No 421
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.93 E-value=0.16 Score=52.19 Aligned_cols=34 Identities=35% Similarity=0.527 Sum_probs=31.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
-.+|.|||+|..|...|..|+++|++|+|+|.+.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999864
No 422
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.85 E-value=0.14 Score=48.78 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=30.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
++|.|+|+|..|...|++|+++|..|+++=+.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 5799999999999999999999988888877553
No 423
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.73 E-value=0.21 Score=44.45 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+.+.|+|+|.|-.|..+|..|.+.|++|++.+.+
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999875
No 424
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.60 E-value=0.17 Score=51.96 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
...+|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999999999999999999999999964
No 425
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.58 E-value=0.29 Score=36.76 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=30.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhC-CCeEEEEec
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDA-SFKVVLLES 59 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~-G~~V~vlE~ 59 (507)
-...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3457899999999999999999998 678999988
No 426
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.52 E-value=0.23 Score=47.58 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (507)
...+|+|||+|-.|.++|+.|+..|. ++.|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45799999999999999999998875 799999854
No 427
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.51 E-value=0.18 Score=51.36 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=31.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...|+|+|+|-+|+++|..|++.|++|.+.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4679999999999999999999999999999753
No 428
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.47 E-value=0.17 Score=41.83 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=29.7
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
+.+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 79999983
No 429
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.29 E-value=0.22 Score=50.80 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=32.4
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
....+|+|||+|..||.|+..+...|.+|.++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457889999999999999999999999999998753
No 430
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.06 E-value=0.24 Score=44.82 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=28.6
Q ss_pred CeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 29 PSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 29 ~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
++|.||| +|..|.+.|..|+++|++|.++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4699997 7999999999999999999998763
No 431
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.04 E-value=0.21 Score=47.18 Aligned_cols=34 Identities=35% Similarity=0.471 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+..+|+|||||..|-.-|+.++..|++|+++|.+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 3468999999999999999999988999999996
No 432
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.87 E-value=0.21 Score=50.68 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=28.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
..+|+|+|.|.+|.++|..|.+ |.+|+|.|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4579999999999999999995 9999999954
No 433
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.80 E-value=0.3 Score=46.46 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||.|-.|+.+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999999999999999999999999999864
No 434
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.79 E-value=0.23 Score=50.67 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCCeEEEECccHHHHH-HHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVA-AARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~-aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|.|||.|-+|++ +|..|.+.|++|++.|...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 4467999999999999 5999999999999999854
No 435
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.77 E-value=0.33 Score=46.63 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (507)
+...+|+|||+|-.|-++|+.|+..|. ++.|+|.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 456799999999999999999999987 799999853
No 436
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.76 E-value=0.26 Score=47.04 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=30.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.++|.|||.|..|...|..|++.|++|.+++++.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 3579999999999999999999999999998753
No 437
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=91.76 E-value=0.19 Score=44.25 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+.+...|+|||||..|.-.|-.-+..|+.|.+++++.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 3567889999999999999999999999999999854
No 438
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.73 E-value=0.28 Score=47.01 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHhCC--CeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDAS--FKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G--~~V~vlE~~~ 61 (507)
+|+|||+|-.|.+.|+.|+..| .+|.+++++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7999999999999999999998 4899999854
No 439
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=91.64 E-value=0.25 Score=47.10 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=30.5
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999853
No 440
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.63 E-value=0.26 Score=53.07 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.-.+|+|||||..|...|+.++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 34679999999999999999999999999999864
No 441
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.62 E-value=0.29 Score=45.49 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999995 89999974
No 442
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.56 E-value=0.23 Score=53.33 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+-.+|+|||||..|...|+.++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45679999999999999999999999999999864
No 443
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.52 E-value=0.28 Score=50.00 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (507)
...+|+|||||.+|+-+|..|.+.|. +|+|+++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45789999999999999999999997 899999743
No 444
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.48 E-value=0.31 Score=45.99 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-+|-++|+.|++.|. +|+|++++
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999997 79999885
No 445
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.48 E-value=0.34 Score=46.68 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=31.9
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~ 61 (507)
.+..+|+|||||-.|-+.|+.|+..| .++.|+|.+.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 35679999999999999999999988 5899999864
No 446
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.22 Score=46.88 Aligned_cols=37 Identities=38% Similarity=0.381 Sum_probs=30.9
Q ss_pred CCCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 25 QARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 25 ~~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.=+.+||+|||||-+|+-||.-|+--=..|+|+|=.+
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 3467999999999999999999986545799999644
No 447
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.44 E-value=0.5 Score=46.88 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=31.2
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 689999999999999999999999999999864
No 448
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.44 E-value=0.32 Score=48.18 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
....|+|+|+|..|+.+|..|...|.+|+|+|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 56789999999999999999999999999999864
No 449
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.36 E-value=0.29 Score=50.14 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
..+|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 456999999999999999999999999999974
No 450
>PLN02256 arogenate dehydrogenase
Probab=91.35 E-value=0.4 Score=45.70 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+.++|+|||.|..|-+.|..|.+.|++|.+++.+.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 467789999999999999999999999999998753
No 451
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.32 E-value=0.41 Score=38.23 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=28.0
Q ss_pred EEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 31 VIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
|+|+|.|-.|...|..|.+.+.+|+++|.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999777999999975
No 452
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.30 E-value=0.33 Score=44.12 Aligned_cols=34 Identities=35% Similarity=0.596 Sum_probs=30.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC---eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF---KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~---~V~vlE~~ 60 (507)
+..+|+|+|||-+|..+|..|.+.|. +|.|++++
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45789999999999999999999996 48888885
No 453
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=91.30 E-value=0.3 Score=45.67 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
.+|++||-|..|...|.+|.++|+.|+|+.++..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 4799999999999999999999999999999643
No 454
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.17 E-value=0.29 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|.|||.|-+|+++|..|.+.|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999754
No 455
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.08 E-value=0.32 Score=48.93 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=30.4
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+|+|||-|.+|+++|..|.++|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999753
No 456
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.06 E-value=0.26 Score=46.85 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.6
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998853
No 457
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.00 E-value=0.28 Score=46.82 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=28.4
Q ss_pred EEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Q 010542 31 VIVIGAGMAGVAAARALHDASF-KVVLLESRD 61 (507)
Q Consensus 31 v~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~~ 61 (507)
|+|||+|..|.+.|+.|+..|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999876 999999864
No 458
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.84 E-value=0.31 Score=49.40 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=31.1
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.+|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 589999999999999999999999999999864
No 459
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.80 E-value=0.2 Score=49.28 Aligned_cols=39 Identities=36% Similarity=0.507 Sum_probs=32.2
Q ss_pred cCCcccCceeEEEEeeCCcEEEEEcCCc-EEEcCEEEEecCchh
Q 010542 254 GLDIRLGHRVTKITRHYIGVKVTVEGGK-TFVADAVVVAVPLGV 296 (507)
Q Consensus 254 g~~i~~~~~V~~I~~~~~~v~v~~~~g~-~~~ad~VI~a~p~~~ 296 (507)
|++|++++.|++|+.++ |++.+|+ ++.++.||.|++...
T Consensus 223 GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 223 GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcC
Confidence 99999999999998754 4556676 599999999998654
No 460
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.80 E-value=0.42 Score=45.20 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=32.2
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||.|-.|.+.|..|+..|.+|+|++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999999864
No 461
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.75 E-value=0.36 Score=47.61 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCCCeEEEEC-ccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 26 ARSPSVIVIG-AGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 26 ~~~~dv~IIG-aGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+...+|+||| .|..|-+.|..|.++|++|.+++++
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 4567899999 8999999999999999999999984
No 462
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.73 E-value=0.42 Score=42.92 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999997 69999984
No 463
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.67 E-value=0.33 Score=52.94 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCe-EEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFK-VVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~-V~vlE~~~ 61 (507)
...+|+|||||.+|+-+|..|.+.|.+ |+|+++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 457899999999999999999999986 99999754
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.56 E-value=0.31 Score=52.54 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=32.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+-.+|+|||||..|...|+.++..|++|+++|.+.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 44679999999999999999999999999999864
No 465
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.43 E-value=0.5 Score=48.07 Aligned_cols=36 Identities=36% Similarity=0.489 Sum_probs=32.2
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
....+|+|+|+|..|+.++..+...|.+|.++|.+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 346789999999999999999999999999999854
No 466
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.39 E-value=0.45 Score=41.25 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.6
Q ss_pred eEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 30 SVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999998 69999984
No 467
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.37 E-value=0.44 Score=46.20 Aligned_cols=34 Identities=38% Similarity=0.588 Sum_probs=31.4
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999998 89999983
No 468
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.28 E-value=0.44 Score=45.49 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=30.0
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|.|||.|..|...|..|++.|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999999999999999999999999998854
No 469
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.26 E-value=0.43 Score=45.58 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=28.2
Q ss_pred eEEEECccHHHHHHHHHHHhCCC--eEEEEecC
Q 010542 30 SVIVIGAGMAGVAAARALHDASF--KVVLLESR 60 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~ 60 (507)
+|+|||+|-.|.++|+.|...|. ++.|+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999999998875 79999974
No 470
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.25 E-value=0.39 Score=51.61 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~ 61 (507)
+..+|+|||||..|..-|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4467999999999999999998 5899999999864
No 471
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.20 E-value=0.55 Score=41.58 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.3
Q ss_pred CCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGA-GMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
+..+++|+|| |-.|..+|..|++.|++|.++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999764
No 472
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.11 E-value=0.51 Score=44.29 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
...+++|+|+|-+|.++|+.|++.|.+|+|+.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568999999999999999999999999999875
No 473
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.11 E-value=0.66 Score=46.20 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=34.7
Q ss_pred CCCCCCCCCeEEEECc-cHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 21 AGKGQARSPSVIVIGA-GMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 21 ~~~~~~~~~dv~IIGa-GiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.++...+.++|+|+|| |..|...+..|.++|++|.++.++.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3444566788999998 9999999999999999999998753
No 474
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.05 E-value=0.4 Score=49.01 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
..+|.|||.|-+|+++|.+|.+.|++|.+.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 357999999999999999999999999999964
No 475
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.97 E-value=0.39 Score=51.69 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.5
Q ss_pred CCCeEEEECccHHHHHHHHHHH-hCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALH-DASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~-~~G~~V~vlE~~~ 61 (507)
.-.+|+|||||..|...|+.++ ..|++|+++|.+.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 4567999999999999999999 8899999999854
No 476
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.90 E-value=0.51 Score=34.79 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=27.7
Q ss_pred HHHHHh-ccCCcccCceeEEEEeeCCcEEEEEcCC
Q 010542 247 VINTLA-KGLDIRLGHRVTKITRHYIGVKVTVEGG 280 (507)
Q Consensus 247 l~~~l~-~g~~i~~~~~V~~I~~~~~~v~v~~~~g 280 (507)
+.+.|. .|+++++|+.|++|..+++++.|+++||
T Consensus 46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 344554 3899999999999999998877888876
No 477
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.88 E-value=0.49 Score=45.84 Aligned_cols=34 Identities=35% Similarity=0.574 Sum_probs=31.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
+..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999998 89999984
No 478
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.82 E-value=0.64 Score=39.31 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCC-CeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDAS-FKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G-~~V~vlE~~~ 61 (507)
+..+|+|||+|..|.+.|..|.+.| .+|.++.++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4578999999999999999999986 7899998753
No 479
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.80 E-value=0.63 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=29.3
Q ss_pred CeEEEECc-cHHHHHHHHHHHhCCC--eEEEEecC
Q 010542 29 PSVIVIGA-GMAGVAAARALHDASF--KVVLLESR 60 (507)
Q Consensus 29 ~dv~IIGa-GiaGL~aA~~L~~~G~--~V~vlE~~ 60 (507)
++|+|||+ |-.|.++|+.|+..|. ++.++|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 48999999 9999999999998884 79999986
No 480
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.64 E-value=0.43 Score=47.55 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=28.3
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 36899999999999999999 99999999954
No 481
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.58 E-value=0.58 Score=42.94 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=30.7
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
+..+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999996 79999874
No 482
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.56 E-value=0.59 Score=46.22 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
.....|+|||.|..|+.+|..|+..|.+|+|+|.++
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 456799999999999999999999999999999754
No 483
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.54 E-value=0.54 Score=44.93 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=30.0
Q ss_pred eEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 30 SVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+|.|||.|..|...|..|.++|++|.+++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999998853
No 484
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.41 E-value=0.56 Score=47.73 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=31.7
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 334569999999999999999999999999999754
No 485
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.37 E-value=0.62 Score=41.53 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=31.0
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46789999999999999999999997 89999973
No 486
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.36 E-value=0.69 Score=43.38 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRDR 62 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~~ 62 (507)
..+.|+|||.|..|-+-|..|.++|+.|.|+.+...
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence 357899999999999999999999999999998543
No 487
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.34 E-value=0.47 Score=52.13 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCeEEEECccHHHHHH-HHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAA-ARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~a-A~~L~~~G~~V~vlE~~~ 61 (507)
+...|.|||.|-+|+++ |..|.++|++|++.|.+.
T Consensus 3 ~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 3 KSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 44569999999999999 999999999999999754
No 488
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.19 E-value=0.67 Score=42.72 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=30.9
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46889999999999999999999997 79999873
No 489
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.18 E-value=0.65 Score=38.76 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=28.7
Q ss_pred eEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 30 SVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
+|+|||+|-.|...|..|++.|. +++|++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 48999999999999999999998 79999974
No 490
>PLN02712 arogenate dehydrogenase
Probab=89.09 E-value=0.75 Score=48.96 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCCeEEEECccHHHHHHHHHHHhCCCeEEEEecC
Q 010542 26 ARSPSVIVIGAGMAGVAAARALHDASFKVVLLESR 60 (507)
Q Consensus 26 ~~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~ 60 (507)
..+++|+|||.|..|-+.|..|.+.|++|.+++++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45678999999999999999999999999999875
No 491
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=89.06 E-value=0.58 Score=41.22 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=28.8
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEec
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLES 59 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~ 59 (507)
++.++|+|+|--|.+-|.+|+++|++|.|-=+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~ 32 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSS 32 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecC
Confidence 46799999999999999999999999988643
No 492
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=89.01 E-value=0.59 Score=51.93 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
...+|+|||||.+|+-||..+.+.|.+|+++.+.+
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45789999999999999999999999999998754
No 493
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.90 E-value=0.71 Score=44.30 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=29.9
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCC--eEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASF--KVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~--~V~vlE~~~ 61 (507)
..+|+|||+|..|.+.|..|.+.|. +|.+++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3579999999999999999999985 899998753
No 494
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.87 E-value=0.52 Score=47.96 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+..+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 56889999999999999999999999999998743
No 495
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.75 E-value=0.63 Score=47.20 Aligned_cols=34 Identities=18% Similarity=0.414 Sum_probs=31.0
Q ss_pred CCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
..+|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4679999999999999999999999999999754
No 496
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.73 E-value=0.6 Score=47.60 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=30.7
Q ss_pred CeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 29 PSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 29 ~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
++|+|+|+|-.|...|..|.+.|++|.++|++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999999864
No 497
>PRK08328 hypothetical protein; Provisional
Probab=88.66 E-value=0.67 Score=42.27 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=30.3
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCC-eEEEEecC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASF-KVVLLESR 60 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~-~V~vlE~~ 60 (507)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999997 79999863
No 498
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.64 E-value=0.67 Score=43.41 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCeEEEECccHHHHHHHHHHHhCC---CeEEEEecC
Q 010542 28 SPSVIVIGAGMAGVAAARALHDAS---FKVVLLESR 60 (507)
Q Consensus 28 ~~dv~IIGaGiaGL~aA~~L~~~G---~~V~vlE~~ 60 (507)
+++|.|||+|..|.+.|..|.+.| .+|.+++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~ 37 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS 37 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCC
Confidence 568999999999999999999988 678888874
No 499
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=88.60 E-value=1 Score=34.46 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=27.6
Q ss_pred eEEEECccHHHHHHHHHHHhCC---CeEEEE-ecC
Q 010542 30 SVIVIGAGMAGVAAARALHDAS---FKVVLL-ESR 60 (507)
Q Consensus 30 dv~IIGaGiaGL~aA~~L~~~G---~~V~vl-E~~ 60 (507)
+|.|||+|-.|.+-+..|.+.| .+|.+. +++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~ 35 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS 35 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence 5899999999999999999999 788865 764
No 500
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=88.55 E-value=1.1 Score=37.66 Aligned_cols=35 Identities=29% Similarity=0.404 Sum_probs=29.1
Q ss_pred CCCeEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Q 010542 27 RSPSVIVIGAGMAGVAAARALHDASFKVVLLESRD 61 (507)
Q Consensus 27 ~~~dv~IIGaGiaGL~aA~~L~~~G~~V~vlE~~~ 61 (507)
+...|+|||-|--|.+-|..|.+.|.+|.|-++.+
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~ 37 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREG 37 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TT
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCC
Confidence 35789999999999999999999999999988854
Done!