Query 010543
Match_columns 507
No_of_seqs 275 out of 2041
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 2E-107 5E-112 760.6 45.7 500 6-507 2-505 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 5.2E-87 1.1E-91 705.3 56.2 469 29-507 20-493 (657)
3 PTZ00009 heat shock 70 kDa pro 100.0 3.4E-84 7.4E-89 690.2 58.4 472 34-506 2-476 (653)
4 PRK13410 molecular chaperone D 100.0 4.8E-83 1E-87 678.4 56.9 461 36-507 2-468 (668)
5 PRK13411 molecular chaperone D 100.0 7.8E-83 1.7E-87 678.9 57.9 460 37-507 3-468 (653)
6 PTZ00400 DnaK-type molecular c 100.0 1.7E-82 3.7E-87 676.5 57.6 461 36-507 41-507 (663)
7 PLN03184 chloroplast Hsp70; Pr 100.0 2.2E-81 4.7E-86 668.2 58.0 461 36-507 39-505 (673)
8 PRK00290 dnaK molecular chaper 100.0 3.8E-81 8.2E-86 667.1 59.3 458 37-507 3-466 (627)
9 TIGR01991 HscA Fe-S protein as 100.0 9.9E-81 2.1E-85 657.5 58.2 452 38-507 1-454 (599)
10 TIGR02350 prok_dnaK chaperone 100.0 1.9E-80 4.1E-85 660.0 57.5 458 37-506 1-463 (595)
11 KOG0101 Molecular chaperones H 100.0 1.4E-82 3.1E-87 641.0 38.9 475 32-507 3-479 (620)
12 CHL00094 dnaK heat shock prote 100.0 5.6E-80 1.2E-84 655.9 58.2 460 36-506 2-467 (621)
13 PRK05183 hscA chaperone protei 100.0 9.4E-80 2E-84 651.2 56.9 452 35-507 18-470 (616)
14 KOG0102 Molecular chaperones m 100.0 2.3E-80 5E-85 599.6 33.1 464 33-507 24-493 (640)
15 PF00012 HSP70: Hsp70 protein; 100.0 3.9E-78 8.4E-83 648.7 51.1 465 38-506 1-469 (602)
16 PRK01433 hscA chaperone protei 100.0 2.6E-76 5.6E-81 619.2 52.4 426 36-507 19-448 (595)
17 COG0443 DnaK Molecular chapero 100.0 1.7E-75 3.7E-80 609.4 43.5 444 35-507 4-449 (579)
18 KOG0103 Molecular chaperones H 100.0 3E-68 6.4E-73 530.7 39.2 459 37-503 2-473 (727)
19 KOG0104 Molecular chaperones G 100.0 7E-62 1.5E-66 485.9 38.4 452 35-498 21-498 (902)
20 PRK11678 putative chaperone; P 100.0 1.6E-54 3.4E-59 439.6 39.0 337 38-412 2-448 (450)
21 PRK13928 rod shape-determining 100.0 6.9E-39 1.5E-43 318.3 32.5 307 39-412 6-324 (336)
22 PRK13929 rod-share determining 100.0 2.7E-38 5.8E-43 313.0 31.8 305 38-409 6-324 (335)
23 PRK13927 rod shape-determining 100.0 4.4E-36 9.5E-41 298.7 31.5 306 38-411 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 5.2E-36 1.1E-40 297.5 31.9 306 39-411 5-327 (333)
25 PRK13930 rod shape-determining 100.0 4.3E-35 9.4E-40 291.9 31.2 307 38-411 10-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 9E-34 1.9E-38 273.8 20.3 307 37-410 2-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 9.6E-31 2.1E-35 242.3 25.0 309 37-412 7-332 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.7E-30 3.7E-35 243.8 23.0 204 146-407 35-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 1.3E-27 2.9E-32 228.3 27.4 202 150-409 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 3.3E-24 7.2E-29 216.1 23.5 195 185-408 157-371 (371)
31 PRK09472 ftsA cell division pr 99.9 1.3E-23 2.9E-28 214.0 26.0 196 188-411 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.9 5.9E-21 1.3E-25 189.2 25.6 198 187-412 166-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 3.7E-17 8.1E-22 165.2 18.0 302 39-411 2-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.7 1.9E-16 4.2E-21 160.2 16.5 302 37-411 2-347 (373)
35 COG4820 EutJ Ethanolamine util 99.7 1.1E-16 2.4E-21 137.9 7.1 197 155-409 76-272 (277)
36 PRK13917 plasmid segregation p 99.7 2.7E-14 5.9E-19 141.5 25.2 208 171-413 109-338 (344)
37 PTZ00280 Actin-related protein 99.6 2.2E-14 4.8E-19 146.6 23.1 225 149-387 80-337 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.6 5.1E-13 1.1E-17 131.7 21.6 206 171-409 101-318 (320)
39 PTZ00281 actin; Provisional 99.5 2.1E-13 4.6E-18 137.4 18.5 239 149-410 79-349 (376)
40 PTZ00004 actin-2; Provisional 99.5 2.9E-13 6.3E-18 136.6 18.9 303 33-410 3-351 (378)
41 TIGR01175 pilM type IV pilus a 99.5 2.6E-12 5.7E-17 128.8 24.1 179 185-409 142-347 (348)
42 PTZ00452 actin; Provisional 99.5 5.5E-13 1.2E-17 134.1 18.7 300 36-410 5-348 (375)
43 PF00022 Actin: Actin; InterP 99.5 2E-13 4.4E-18 139.2 15.8 313 35-412 3-368 (393)
44 PTZ00466 actin-like protein; P 99.5 5.7E-12 1.2E-16 126.8 21.2 300 37-410 13-353 (380)
45 PF11104 PilM_2: Type IV pilus 99.4 5E-12 1.1E-16 125.9 17.2 179 185-409 135-339 (340)
46 PF06406 StbA: StbA protein; 99.3 2E-11 4.2E-16 120.1 14.0 174 201-406 141-316 (318)
47 KOG0679 Actin-related protein 99.3 1.9E-10 4.1E-15 109.4 18.8 181 37-276 12-202 (426)
48 COG4972 PilM Tfp pilus assembl 99.2 9.9E-09 2.1E-13 96.5 22.4 156 186-386 149-311 (354)
49 COG5277 Actin and related prot 99.1 2.3E-09 5E-14 108.7 18.4 98 172-276 106-204 (444)
50 TIGR00241 CoA_E_activ CoA-subs 99.0 1.5E-08 3.3E-13 96.2 18.4 170 204-408 73-248 (248)
51 TIGR03192 benz_CoA_bzdQ benzoy 99.0 1E-07 2.2E-12 90.5 22.3 180 204-411 106-288 (293)
52 PRK10719 eutA reactivating fac 98.8 8.7E-09 1.9E-13 102.7 8.3 84 173-268 89-184 (475)
53 TIGR03286 methan_mark_15 putat 98.8 4.4E-07 9.4E-12 89.6 19.6 180 204-410 220-402 (404)
54 TIGR02261 benz_CoA_red_D benzo 98.7 2.5E-06 5.4E-11 80.0 21.3 179 205-409 80-262 (262)
55 COG1924 Activator of 2-hydroxy 98.7 1.3E-06 2.8E-11 84.1 19.3 180 204-412 211-391 (396)
56 KOG0677 Actin-related protein 98.7 7.4E-07 1.6E-11 80.7 15.7 194 172-386 101-318 (389)
57 TIGR02259 benz_CoA_red_A benzo 98.7 8.9E-07 1.9E-11 86.3 17.4 180 204-409 249-432 (432)
58 PF07520 SrfB: Virulence facto 98.7 5.3E-06 1.1E-10 89.7 23.0 323 81-411 330-834 (1002)
59 KOG0676 Actin and related prot 98.5 1.4E-06 3.1E-11 85.5 13.8 207 154-386 82-314 (372)
60 PRK13317 pantothenate kinase; 98.3 0.00011 2.5E-09 70.3 20.6 48 363-410 223-273 (277)
61 PF08841 DDR: Diol dehydratase 98.2 2.3E-05 5E-10 72.3 11.9 193 193-409 103-329 (332)
62 COG4457 SrfB Uncharacterized p 97.7 0.0054 1.2E-07 63.3 20.0 81 325-411 743-846 (1014)
63 PF01869 BcrAD_BadFG: BadF/Bad 97.6 0.022 4.8E-07 54.8 22.7 72 335-409 196-271 (271)
64 COG1070 XylB Sugar (pentulose 97.6 0.013 2.9E-07 61.6 22.5 58 351-411 392-449 (502)
65 KOG0797 Actin-related protein 97.6 0.00085 1.9E-08 67.0 12.4 121 145-274 195-321 (618)
66 PF06277 EutA: Ethanolamine ut 97.6 0.00043 9.2E-09 69.7 10.2 72 174-245 87-163 (473)
67 KOG0680 Actin-related protein 97.5 0.0048 1E-07 58.4 15.7 98 172-274 93-198 (400)
68 TIGR00555 panK_eukar pantothen 97.4 0.021 4.5E-07 54.6 19.0 72 335-407 204-278 (279)
69 PRK10854 exopolyphosphatase; P 97.0 0.058 1.3E-06 56.9 19.4 110 153-269 65-176 (513)
70 PRK11031 guanosine pentaphosph 97.0 0.027 5.8E-07 59.1 16.7 80 185-270 91-172 (496)
71 PF02782 FGGY_C: FGGY family o 96.9 0.0011 2.5E-08 60.5 4.4 76 334-411 120-196 (198)
72 smart00842 FtsA Cell division 96.6 0.0066 1.4E-07 55.0 7.4 30 186-215 157-186 (187)
73 KOG0681 Actin-related protein 96.6 0.025 5.4E-07 57.3 11.4 119 147-274 91-214 (645)
74 PRK15027 xylulokinase; Provisi 96.3 0.012 2.6E-07 61.7 7.9 54 362-416 386-439 (484)
75 COG4819 EutA Ethanolamine util 96.2 0.036 7.8E-07 52.9 9.8 72 174-245 89-165 (473)
76 TIGR01315 5C_CHO_kinase FGGY-f 96.2 0.014 3.1E-07 62.1 8.2 86 328-415 409-494 (541)
77 PLN02669 xylulokinase 96.2 0.017 3.6E-07 61.6 8.6 72 337-411 421-492 (556)
78 COG0248 GppA Exopolyphosphatas 96.0 0.1 2.3E-06 54.1 12.9 59 186-244 89-148 (492)
79 TIGR01312 XylB D-xylulose kina 95.7 0.034 7.4E-07 58.4 8.3 79 335-415 362-441 (481)
80 PRK00047 glpK glycerol kinase; 95.6 0.036 7.8E-07 58.5 8.0 79 335-415 375-454 (498)
81 PTZ00294 glycerol kinase-like 95.6 0.039 8.6E-07 58.2 8.3 79 336-416 379-458 (504)
82 TIGR03706 exo_poly_only exopol 95.6 0.17 3.6E-06 49.5 12.1 109 154-269 55-164 (300)
83 KOG2517 Ribulose kinase and re 95.6 0.047 1E-06 56.1 8.2 79 335-415 386-465 (516)
84 TIGR01311 glycerol_kin glycero 95.6 0.038 8.2E-07 58.2 7.9 80 335-416 371-451 (493)
85 PRK04123 ribulokinase; Provisi 95.5 0.036 7.9E-07 59.2 7.7 78 336-415 412-490 (548)
86 TIGR02628 fuculo_kin_coli L-fu 95.5 0.036 7.8E-07 57.9 7.4 77 335-415 365-444 (465)
87 TIGR01234 L-ribulokinase L-rib 95.5 0.041 8.9E-07 58.6 7.8 52 362-415 435-487 (536)
88 PRK10331 L-fuculokinase; Provi 95.5 0.046 1E-06 57.2 8.0 79 336-416 362-441 (470)
89 PF01968 Hydantoinase_A: Hydan 95.3 0.022 4.7E-07 55.4 4.7 70 336-408 215-284 (290)
90 PF14450 FtsA: Cell division p 95.3 0.013 2.8E-07 48.8 2.7 48 227-274 1-53 (120)
91 TIGR01314 gntK_FGGY gluconate 95.3 0.051 1.1E-06 57.5 7.7 76 335-415 373-452 (505)
92 COG1069 AraB Ribulose kinase [ 95.2 0.3 6.4E-06 50.2 12.4 82 330-416 399-483 (544)
93 TIGR02627 rhamnulo_kin rhamnul 95.1 0.061 1.3E-06 56.0 7.5 52 362-416 387-438 (454)
94 KOG0681 Actin-related protein 95.1 0.019 4.2E-07 58.1 3.5 68 344-411 538-614 (645)
95 PLN02295 glycerol kinase 94.9 0.074 1.6E-06 56.3 7.8 79 335-415 379-463 (512)
96 PRK13318 pantothenate kinase; 94.9 1.1 2.3E-05 42.9 14.9 20 38-57 2-21 (258)
97 PRK10939 autoinducer-2 (AI-2) 94.8 0.071 1.5E-06 56.5 7.3 52 362-415 409-460 (520)
98 PRK13321 pantothenate kinase; 94.8 1.1 2.4E-05 42.7 14.5 20 38-57 2-21 (256)
99 KOG2531 Sugar (pentulose and h 94.6 0.11 2.4E-06 51.8 7.4 55 355-411 435-489 (545)
100 PRK10640 rhaB rhamnulokinase; 94.5 0.11 2.3E-06 54.4 7.5 52 362-416 375-426 (471)
101 TIGR00329 gcp_kae1 metallohydr 94.1 1.2 2.5E-05 43.7 13.4 25 362-386 258-282 (305)
102 PRK14878 UGMP family protein; 93.9 6.8 0.00015 38.7 18.5 93 171-269 65-160 (323)
103 PF13941 MutL: MutL protein 93.3 0.36 7.9E-06 49.5 8.4 33 38-74 2-36 (457)
104 PF02541 Ppx-GppA: Ppx/GppA ph 93.2 0.45 9.8E-06 46.1 8.8 77 187-269 73-151 (285)
105 PF14450 FtsA: Cell division p 93.1 0.045 9.8E-07 45.5 1.4 21 38-58 1-21 (120)
106 PRK09585 anmK anhydro-N-acetyl 92.6 1.2 2.6E-05 44.4 10.7 70 339-412 266-339 (365)
107 PRK09557 fructokinase; Reviewe 92.3 12 0.00025 36.5 20.5 38 197-235 95-133 (301)
108 PRK09698 D-allose kinase; Prov 91.8 13 0.00029 36.1 21.7 38 197-235 103-140 (302)
109 PF07318 DUF1464: Protein of u 91.5 2.8 6.1E-05 41.1 11.6 69 341-414 243-318 (343)
110 COG1548 Predicted transcriptio 91.2 2.9 6.2E-05 38.9 10.6 74 156-244 75-149 (330)
111 PTZ00340 O-sialoglycoprotein e 91.1 17 0.00038 36.0 16.9 41 342-387 248-288 (345)
112 TIGR00671 baf pantothenate kin 91.1 12 0.00025 35.4 15.2 46 330-375 174-219 (243)
113 PRK09604 UGMP family protein; 89.9 22 0.00048 35.3 21.4 52 362-413 254-310 (332)
114 PTZ00297 pantothenate kinase; 89.8 24 0.00052 42.2 19.3 74 335-409 1365-1444(1452)
115 PRK05082 N-acetylmannosamine k 89.8 20 0.00044 34.6 22.2 49 362-410 233-287 (291)
116 COG3426 Butyrate kinase [Energ 89.7 11 0.00024 35.7 13.2 48 360-407 294-344 (358)
117 COG1521 Pantothenate kinase ty 89.7 18 0.0004 34.1 16.7 45 331-375 181-225 (251)
118 PF03702 UPF0075: Uncharacteri 89.7 0.93 2E-05 45.3 6.8 76 334-412 259-338 (364)
119 PF02543 CmcH_NodU: Carbamoylt 89.5 11 0.00023 37.9 14.3 81 328-413 132-215 (360)
120 COG0533 QRI7 Metal-dependent p 89.3 23 0.00051 34.8 17.3 225 147-407 41-307 (342)
121 KOG0678 Actin-related protein 88.6 19 0.00042 34.9 14.1 97 173-273 107-207 (415)
122 PLN02666 5-oxoprolinase 88.5 7.6 0.00017 45.4 13.8 64 343-409 469-532 (1275)
123 COG0554 GlpK Glycerol kinase [ 87.4 2 4.4E-05 43.7 7.4 78 336-415 375-453 (499)
124 COG2971 Predicted N-acetylgluc 86.0 34 0.00074 33.0 19.2 65 340-412 227-292 (301)
125 COG2377 Predicted molecular ch 85.9 7.3 0.00016 38.4 10.1 54 359-412 287-344 (371)
126 PRK14101 bifunctional glucokin 85.8 47 0.001 36.3 17.7 21 34-54 16-36 (638)
127 TIGR03723 bact_gcp putative gl 85.7 37 0.00081 33.3 15.3 45 362-406 259-308 (314)
128 TIGR00744 ROK_glcA_fam ROK fam 85.4 39 0.00084 33.1 20.4 93 148-242 32-140 (318)
129 PRK09605 bifunctional UGMP fam 85.0 57 0.0012 34.7 18.3 49 363-411 246-299 (535)
130 KOG2708 Predicted metalloprote 84.9 9.5 0.00021 34.9 9.6 75 329-408 225-301 (336)
131 PLN02920 pantothenate kinase 1 83.5 20 0.00042 36.1 12.0 75 334-410 270-351 (398)
132 TIGR03281 methan_mark_12 putat 82.6 7.9 0.00017 37.2 8.5 50 363-415 263-315 (326)
133 COG0145 HyuA N-methylhydantoin 81.4 2 4.4E-05 46.5 4.8 41 203-244 256-297 (674)
134 PF13941 MutL: MutL protein 79.9 31 0.00068 35.6 12.5 47 227-273 2-49 (457)
135 PRK00976 hypothetical protein; 79.0 17 0.00037 35.6 9.7 50 362-414 263-314 (326)
136 PF00370 FGGY_N: FGGY family o 78.7 2 4.3E-05 40.5 3.4 19 37-55 1-19 (245)
137 cd06007 R3H_DEXH_helicase R3H 78.3 8.2 0.00018 27.4 5.5 29 174-202 16-44 (59)
138 PRK03011 butyrate kinase; Prov 78.1 8.3 0.00018 38.6 7.6 47 362-408 295-344 (358)
139 TIGR03722 arch_KAE1 universal 78.1 74 0.0016 31.4 15.8 24 363-386 243-266 (322)
140 COG1940 NagC Transcriptional r 77.8 24 0.00051 34.6 10.9 23 33-55 3-25 (314)
141 smart00732 YqgFc Likely ribonu 76.2 2.6 5.6E-05 33.2 2.9 19 37-55 2-20 (99)
142 PTZ00107 hexokinase; Provision 75.4 1.1E+02 0.0024 31.9 21.0 62 180-241 189-253 (464)
143 PF03652 UPF0081: Uncharacteri 74.7 3.5 7.6E-05 34.9 3.4 21 36-56 1-21 (135)
144 TIGR00143 hypF [NiFe] hydrogen 74.4 4.5 9.7E-05 44.4 5.0 49 362-410 658-711 (711)
145 PF14574 DUF4445: Domain of un 74.2 12 0.00026 38.1 7.6 47 334-380 55-101 (412)
146 PLN02362 hexokinase 73.0 44 0.00094 35.2 11.5 55 184-241 204-260 (509)
147 COG5026 Hexokinase [Carbohydra 72.7 39 0.00085 34.3 10.5 22 33-54 72-93 (466)
148 PF08735 DUF1786: Putative pyr 72.1 43 0.00094 31.5 10.1 96 170-270 112-210 (254)
149 PRK10331 L-fuculokinase; Provi 71.5 3.7 8E-05 42.9 3.4 21 37-57 3-24 (470)
150 PRK10939 autoinducer-2 (AI-2) 70.6 3.8 8.3E-05 43.5 3.3 20 36-55 3-22 (520)
151 cd02640 R3H_NRF R3H domain of 70.4 18 0.0004 25.7 5.7 30 173-202 16-45 (60)
152 PF00349 Hexokinase_1: Hexokin 68.6 6.8 0.00015 35.9 4.1 33 186-218 169-204 (206)
153 KOG1385 Nucleoside phosphatase 67.9 26 0.00057 35.2 8.0 20 224-243 212-231 (453)
154 PRK00047 glpK glycerol kinase; 67.5 4.8 0.0001 42.4 3.3 20 36-55 5-24 (498)
155 PTZ00294 glycerol kinase-like 66.4 5.4 0.00012 42.1 3.4 19 37-55 3-21 (504)
156 PLN02405 hexokinase 65.5 1.2E+02 0.0025 32.0 12.7 57 184-243 204-262 (497)
157 PRK13331 pantothenate kinase; 65.4 8 0.00017 36.5 4.0 27 31-57 2-28 (251)
158 PRK15027 xylulokinase; Provisi 64.5 5.6 0.00012 41.8 3.1 19 37-55 1-19 (484)
159 PLN02914 hexokinase 64.3 1.1E+02 0.0024 32.0 12.3 59 183-244 203-263 (490)
160 PRK00109 Holliday junction res 64.3 7.7 0.00017 33.0 3.3 22 35-56 3-24 (138)
161 TIGR02628 fuculo_kin_coli L-fu 63.7 6.4 0.00014 41.1 3.3 19 37-55 2-20 (465)
162 PRK04123 ribulokinase; Provisi 62.9 7.5 0.00016 41.6 3.7 19 36-54 3-21 (548)
163 TIGR03123 one_C_unchar_1 proba 62.7 5.7 0.00012 38.9 2.5 20 224-243 127-146 (318)
164 PLN02295 glycerol kinase 62.3 6.5 0.00014 41.6 3.1 21 37-57 1-22 (512)
165 PF14574 DUF4445: Domain of un 62.2 20 0.00044 36.5 6.4 61 322-383 288-348 (412)
166 COG0816 Predicted endonuclease 62.0 8.4 0.00018 32.8 3.1 21 36-56 2-22 (141)
167 TIGR01234 L-ribulokinase L-rib 61.8 7.7 0.00017 41.4 3.5 18 37-54 2-19 (536)
168 PF00349 Hexokinase_1: Hexokin 60.4 29 0.00064 31.7 6.6 25 223-247 61-85 (206)
169 TIGR01319 glmL_fam conserved h 58.3 1.5E+02 0.0031 30.8 11.6 51 230-281 1-51 (463)
170 TIGR01311 glycerol_kin glycero 57.4 8.6 0.00019 40.5 3.0 19 37-55 2-20 (493)
171 cd02641 R3H_Smubp-2_like R3H d 57.3 53 0.0012 23.3 6.1 29 174-202 17-45 (60)
172 TIGR01314 gntK_FGGY gluconate 57.0 9.4 0.0002 40.4 3.2 19 37-55 1-19 (505)
173 PRK07058 acetate kinase; Provi 56.4 1E+02 0.0022 31.2 10.0 47 337-387 297-344 (396)
174 COG2069 CdhD CO dehydrogenase/ 56.4 26 0.00056 33.4 5.4 66 173-239 251-327 (403)
175 cd00529 RuvC_resolvase Hollida 56.3 18 0.00039 31.4 4.3 24 38-61 2-27 (154)
176 COG2192 Predicted carbamoyl tr 55.9 2.7E+02 0.0059 29.4 21.9 79 329-412 256-336 (555)
177 COG4012 Uncharacterized protei 55.3 94 0.002 29.4 8.8 67 204-274 208-274 (342)
178 cd02639 R3H_RRM R3H domain of 54.4 36 0.00078 24.2 4.8 30 173-202 16-45 (60)
179 TIGR01315 5C_CHO_kinase FGGY-f 53.3 12 0.00026 40.0 3.3 18 38-55 2-19 (541)
180 cd02646 R3H_G-patch R3H domain 53.2 41 0.00089 23.6 5.0 41 159-202 3-43 (58)
181 PRK13310 N-acetyl-D-glucosamin 53.2 1.3E+02 0.0028 29.2 10.3 48 362-409 245-300 (303)
182 PRK13310 N-acetyl-D-glucosamin 52.8 49 0.0011 32.2 7.3 39 196-235 94-133 (303)
183 PRK13329 pantothenate kinase; 52.7 2.1E+02 0.0045 27.1 13.2 71 330-410 175-245 (249)
184 PLN02669 xylulokinase 52.3 13 0.00028 39.9 3.3 22 34-55 6-27 (556)
185 COG5026 Hexokinase [Carbohydra 51.0 60 0.0013 33.0 7.3 29 223-251 73-102 (466)
186 TIGR02707 butyr_kinase butyrat 48.7 52 0.0011 32.9 6.7 68 337-407 271-341 (351)
187 PRK13326 pantothenate kinase; 48.6 21 0.00045 34.1 3.7 22 36-57 6-27 (262)
188 PLN02377 3-ketoacyl-CoA syntha 47.8 1.1E+02 0.0024 32.2 9.2 55 333-387 164-219 (502)
189 KOG2707 Predicted metalloprote 45.8 3.2E+02 0.0069 27.2 20.5 221 149-386 78-329 (405)
190 PRK13320 pantothenate kinase; 45.4 27 0.00058 33.0 3.9 21 37-57 3-23 (244)
191 KOG1369 Hexokinase [Carbohydra 45.3 3.5E+02 0.0075 28.3 12.0 66 178-246 184-252 (474)
192 PLN02596 hexokinase-like 45.1 3.9E+02 0.0085 28.1 14.2 58 184-244 204-263 (490)
193 KOG0797 Actin-related protein 41.8 9.8 0.00021 39.0 0.4 53 361-413 525-591 (618)
194 TIGR00250 RNAse_H_YqgF RNAse H 41.6 17 0.00037 30.5 1.8 18 39-56 1-18 (130)
195 PF02075 RuvC: Crossover junct 41.6 48 0.001 28.5 4.6 24 38-61 1-26 (149)
196 PRK00039 ruvC Holliday junctio 41.1 26 0.00055 30.8 2.9 19 36-54 2-20 (164)
197 PLN03173 chalcone synthase; Pr 39.7 1.2E+02 0.0027 30.8 8.0 52 336-387 97-149 (391)
198 PLN02854 3-ketoacyl-CoA syntha 39.2 78 0.0017 33.4 6.5 54 334-387 181-235 (521)
199 KOG2517 Ribulose kinase and re 39.1 41 0.00089 35.2 4.4 20 35-54 5-24 (516)
200 PF08392 FAE1_CUT1_RppA: FAE1/ 38.2 86 0.0019 30.2 6.1 49 339-387 81-130 (290)
201 PLN03170 chalcone synthase; Pr 37.9 1.2E+02 0.0026 31.0 7.6 56 332-387 97-153 (401)
202 PLN03172 chalcone synthase fam 37.7 1.3E+02 0.0029 30.5 7.9 56 332-387 93-149 (393)
203 PRK11199 tyrA bifunctional cho 37.5 3.4E+02 0.0074 27.4 10.7 96 263-384 13-120 (374)
204 COG3894 Uncharacterized metal- 36.0 2.4E+02 0.0051 29.5 8.9 48 225-272 164-212 (614)
205 PF03309 Pan_kinase: Type III 35.1 49 0.0011 30.2 3.9 21 38-58 1-21 (206)
206 PRK13324 pantothenate kinase; 33.7 47 0.001 31.6 3.6 20 38-57 2-21 (258)
207 PRK00180 acetate kinase A/prop 33.2 1.5E+02 0.0032 30.2 7.2 48 337-387 301-349 (402)
208 PLN03168 chalcone synthase; Pr 32.6 1.7E+02 0.0037 29.7 7.7 57 331-387 91-148 (389)
209 PRK13322 pantothenate kinase; 31.6 2.9E+02 0.0062 26.0 8.5 144 185-375 59-219 (246)
210 PRK00292 glk glucokinase; Prov 31.2 48 0.001 32.5 3.4 44 195-238 87-141 (316)
211 TIGR01312 XylB D-xylulose kina 30.2 31 0.00067 36.1 1.9 17 39-55 1-17 (481)
212 PLN02192 3-ketoacyl-CoA syntha 29.5 1.6E+02 0.0034 31.1 6.9 55 333-387 168-223 (511)
213 TIGR02627 rhamnulo_kin rhamnul 28.7 29 0.00062 36.1 1.4 16 39-54 1-16 (454)
214 PLN02902 pantothenate kinase 28.7 4E+02 0.0086 30.1 9.9 76 335-411 320-401 (876)
215 PF04848 Pox_A22: Poxvirus A22 28.5 1E+02 0.0023 26.3 4.4 26 36-61 1-28 (143)
216 PRK12408 glucokinase; Provisio 28.4 42 0.00091 33.3 2.4 22 34-55 14-35 (336)
217 KOG1369 Hexokinase [Carbohydra 28.2 2.8E+02 0.006 28.9 8.2 26 223-248 84-109 (474)
218 TIGR00067 glut_race glutamate 27.7 1.3E+02 0.0028 28.5 5.4 41 362-406 172-212 (251)
219 TIGR02707 butyr_kinase butyrat 27.4 1.2E+02 0.0025 30.4 5.3 27 227-253 2-28 (351)
220 smart00874 B5 tRNA synthetase 27.3 1.7E+02 0.0036 21.2 5.0 59 99-157 8-66 (71)
221 COG1940 NagC Transcriptional r 26.8 2.5E+02 0.0053 27.3 7.6 56 224-279 5-60 (314)
222 PLN00130 succinate dehydrogena 26.4 8.3 0.00018 33.6 -2.5 21 36-56 57-77 (213)
223 PRK14878 UGMP family protein; 25.9 1E+02 0.0022 30.4 4.7 44 336-379 39-82 (323)
224 PRK13321 pantothenate kinase; 25.6 2.5E+02 0.0055 26.5 7.1 17 227-243 2-18 (256)
225 PF04312 DUF460: Protein of un 25.5 1.1E+02 0.0024 25.8 3.9 28 33-61 29-57 (138)
226 PF03484 B5: tRNA synthetase B 25.5 2.2E+02 0.0048 20.7 5.3 58 99-158 8-66 (70)
227 TIGR00016 ackA acetate kinase. 25.4 2.5E+02 0.0055 28.6 7.3 47 338-387 306-353 (404)
228 TIGR03722 arch_KAE1 universal 25.4 1.2E+02 0.0025 29.9 4.9 44 336-379 40-83 (322)
229 smart00732 YqgFc Likely ribonu 24.9 1.6E+02 0.0036 22.6 4.9 23 226-248 2-24 (99)
230 PF05378 Hydant_A_N: Hydantoin 24.8 70 0.0015 28.4 2.9 18 39-56 2-19 (176)
231 PF01548 DEDD_Tnp_IS110: Trans 24.0 1.3E+02 0.0027 25.4 4.3 20 38-57 1-20 (144)
232 COG3264 Small-conductance mech 23.9 3.1E+02 0.0067 30.6 7.9 57 169-243 712-771 (835)
233 TIGR00329 gcp_kae1 metallohydr 23.8 1.3E+02 0.0027 29.4 4.8 45 336-380 43-87 (305)
234 PLN02914 hexokinase 23.4 2.2E+02 0.0049 29.8 6.7 24 223-246 93-116 (490)
235 COG0068 HypF Hydrogenase matur 23.3 2.6E+02 0.0056 30.6 7.1 49 361-409 692-745 (750)
236 PRK07515 3-oxoacyl-(acyl carri 23.2 78 0.0017 31.9 3.3 38 338-375 266-303 (372)
237 COG0533 QRI7 Metal-dependent p 22.7 2.1E+02 0.0046 28.3 5.9 46 335-380 44-89 (342)
238 PTZ00340 O-sialoglycoprotein e 22.2 1.6E+02 0.0035 29.3 5.1 45 336-380 44-88 (345)
239 PF01869 BcrAD_BadFG: BadF/Bad 22.1 2.4E+02 0.0053 26.7 6.4 21 228-248 1-21 (271)
240 PRK12879 3-oxoacyl-(acyl carri 22.1 2.2E+02 0.0047 27.8 6.2 48 336-386 218-265 (325)
241 PLN02932 3-ketoacyl-CoA syntha 21.9 2.8E+02 0.0061 29.0 7.0 57 331-387 138-195 (478)
242 PF00480 ROK: ROK family; Int 21.8 5.3E+02 0.011 22.3 11.7 104 127-242 14-134 (179)
243 PTZ00107 hexokinase; Provision 21.8 2.8E+02 0.006 29.0 6.9 25 223-247 72-96 (464)
244 KOG2872 Uroporphyrinogen decar 21.6 2.2E+02 0.0047 27.4 5.5 44 328-373 219-262 (359)
245 PLN02362 hexokinase 21.6 3E+02 0.0064 29.1 7.2 25 223-247 93-117 (509)
246 TIGR01198 pgl 6-phosphoglucono 21.6 1.7E+02 0.0036 27.3 4.9 46 334-384 5-50 (233)
247 COG2441 Predicted butyrate kin 21.6 1.6E+02 0.0035 28.1 4.6 55 360-414 271-335 (374)
248 PF02801 Ketoacyl-synt_C: Beta 21.6 78 0.0017 25.8 2.4 45 343-387 25-71 (119)
249 PTZ00288 glucokinase 1; Provis 21.5 83 0.0018 32.1 3.0 21 35-55 25-45 (405)
250 PF07066 DUF3882: Lactococcus 21.3 1.2E+02 0.0026 25.8 3.4 23 36-58 2-29 (159)
251 COG0554 GlpK Glycerol kinase [ 21.3 82 0.0018 32.5 2.9 23 35-57 4-27 (499)
252 cd02198 YjgH_like YjgH belongs 21.2 1.8E+02 0.0038 23.4 4.4 49 339-387 32-82 (111)
253 TIGR00114 lumazine-synth 6,7-d 20.9 86 0.0019 26.6 2.5 44 340-384 13-56 (138)
254 TIGR01319 glmL_fam conserved h 20.7 69 0.0015 33.0 2.3 59 185-243 193-267 (463)
255 PRK13318 pantothenate kinase; 20.5 3.7E+02 0.008 25.4 7.2 17 227-243 2-18 (258)
256 PRK12419 riboflavin synthase s 20.4 85 0.0018 27.3 2.4 59 341-409 24-82 (158)
257 PLN00415 3-ketoacyl-CoA syntha 20.4 2.5E+02 0.0053 29.3 6.2 45 343-387 136-181 (466)
258 TIGR03723 bact_gcp putative gl 20.3 1.6E+02 0.0035 28.9 4.7 65 337-403 45-115 (314)
259 PF01424 R3H: R3H domain; Int 20.2 2.4E+02 0.0051 19.8 4.4 26 176-202 22-47 (63)
260 PRK09352 3-oxoacyl-(acyl carri 20.1 2.5E+02 0.0054 27.3 6.1 47 337-386 213-259 (319)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-107 Score=760.64 Aligned_cols=500 Identities=78% Similarity=1.155 Sum_probs=474.9
Q ss_pred ccccchhhHHHHHHHhhhhhhhchhhh----ccCCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcE
Q 010543 6 RARGSLVVLAIVFFGGLFAISIAKEEA----TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSER 81 (507)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~ 81 (507)
+....+.+++++-+.+.++...++... ++...+||||+||||+||+++++|++++|.|.+|+|.+||+|+|.++++
T Consensus 2 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~der 81 (663)
T KOG0100|consen 2 KLSFLLAMLLFLAVLFFGCSEAASTEKEDEAEKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDER 81 (663)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhccccchhccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchh
Confidence 333444444443333333443333332 3467899999999999999999999999999999999999999999999
Q ss_pred EEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHH
Q 010543 82 LIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMK 161 (507)
Q Consensus 82 ~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~ 161 (507)
++|++|+++...||++++++.|||+|+.+++..++++++.+||++++.++++.+++.+..|+.+.++|+++.+|+|.+++
T Consensus 82 LiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMK 161 (663)
T KOG0100|consen 82 LIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMK 161 (663)
T ss_pred hhhhHhhcccccCcccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999996688999999999999999999
Q ss_pred HHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEE
Q 010543 162 ETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSI 241 (507)
Q Consensus 162 ~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv 241 (507)
+.|+.+++.++.+.|+|||+||++.||+++++|...||++++++|+||+|||++|++++.....++||||+||||||+|+
T Consensus 162 e~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSl 241 (663)
T KOG0100|consen 162 ETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSL 241 (663)
T ss_pred HHHHHHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccC
Q 010543 242 LTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD 321 (507)
Q Consensus 242 ~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~ 321 (507)
+.++++.|+++++.|+.++||++||++.++|+...++++++.+++.+.+++.+|+++||++|+.||++.+..++++++++
T Consensus 242 LtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fd 321 (663)
T KOG0100|consen 242 LTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFD 321 (663)
T ss_pred EEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhh
Q 010543 322 GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAV 401 (507)
Q Consensus 322 ~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~av 401 (507)
|.|++-++||+.||++.-+++...+.+++++|+++++++.+|+.|+||||++|+|.+|++|+++|.|++..+..||++||
T Consensus 322 G~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAV 401 (663)
T KOG0100|consen 322 GVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAV 401 (663)
T ss_pred cccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhhcCCCCCCCcceEEEecccceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcC
Q 010543 402 AYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSL 481 (507)
Q Consensus 402 a~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~ 481 (507)
|+|||.+|..+++... ..++++.|++|.++||++.+|.|..+||+++.+|+++++.|++..|+|..+.|.+|||++++
T Consensus 402 AYGAAVQaGvlsGee~--t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~m 479 (663)
T KOG0100|consen 402 AYGAAVQAGVLSGEED--TGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPM 479 (663)
T ss_pred HhhhhhhhcccccccC--cCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccc
Confidence 9999999999999865 77999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 482 TKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 482 ~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
.++|..||+|.|+|+||+|+|+|+||
T Consensus 480 tkdn~lLGkFdltGipPAPRGvpqIE 505 (663)
T KOG0100|consen 480 TKDNHLLGKFDLTGIPPAPRGVPQIE 505 (663)
T ss_pred cccccccccccccCCCCCCCCCccEE
Confidence 99999999999999999999999986
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=5.2e-87 Score=705.29 Aligned_cols=469 Identities=54% Similarity=0.905 Sum_probs=435.7
Q ss_pred hhhhccCCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCC
Q 010543 29 KEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGR 108 (507)
Q Consensus 29 ~~~~~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~ 108 (507)
|.+......+||||||||||++|+++++.++++.|..|.+.+||+|+|.++.+++|..|+.....+|.++++++||+||+
T Consensus 20 ~~~~~~~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~ 99 (657)
T PTZ00186 20 HESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGR 99 (657)
T ss_pred cccCcccceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhcc
Confidence 44544456799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHH
Q 010543 109 KFEDKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~q 187 (507)
.+.++.++...+.+||.++ ..++...+. .+..+.++|+++.+++|+++++.++.+++.++.++|||||++|++.|
T Consensus 100 ~~~d~~v~~~~~~~p~~vv~~~~~~~~i~----~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~q 175 (657)
T PTZ00186 100 RFEDEHIQKDIKNVPYKIVRAGNGDAWVQ----DGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQ 175 (657)
T ss_pred ccccHHHHHhhccCcEEEEEcCCCceEEE----eCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHH
Confidence 9999999999999999998 445554433 22347899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHH
Q 010543 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (507)
Q Consensus 188 r~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 267 (507)
|+++++|++.|||+++++++||+|||++|++... .+.+++|||+||||||+|++++.++.++++++.|+..+||++||+
T Consensus 176 R~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~ 254 (657)
T PTZ00186 176 RQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDL 254 (657)
T ss_pred HHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHH
Confidence 9999999999999999999999999999987654 467999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCC----cceEEeecHHHHHHHHHHHHH
Q 010543 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFR 343 (507)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~ 343 (507)
.|++|+.++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++.++|||++|+++++|+++
T Consensus 255 ~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~ 334 (657)
T PTZ00186 255 ALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIE 334 (657)
T ss_pred HHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999999999998888776432 457899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcce
Q 010543 344 KTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 423 (507)
Q Consensus 344 ~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~ 423 (507)
++..+++++|+++++++.+|+.|+||||+|++|.|++.|++.| +..+....||+++||+|||++|+.+++. .+++
T Consensus 335 r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~ 409 (657)
T PTZ00186 335 RSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGL 409 (657)
T ss_pred HHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCce
Confidence 9999999999999999999999999999999999999999999 5667788999999999999999998864 4588
Q ss_pred EEEecccceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCc
Q 010543 424 LLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFV 503 (507)
Q Consensus 424 ~~~~~~~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~ 503 (507)
.+.|++|+++|++..++.+.+|||+|+++|++++..|++..|+|+.+.|.||||++...++|..||+|+|.|+||+|+|+
T Consensus 410 ~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~ 489 (657)
T PTZ00186 410 VLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGV 489 (657)
T ss_pred EEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 010543 504 SAFN 507 (507)
Q Consensus 504 ~~i~ 507 (507)
++|+
T Consensus 490 ~~I~ 493 (657)
T PTZ00186 490 PQIE 493 (657)
T ss_pred CcEE
Confidence 8874
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=3.4e-84 Score=690.24 Aligned_cols=472 Identities=69% Similarity=1.086 Sum_probs=444.1
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCH
Q 010543 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (507)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (507)
+...+||||||||||++|++.+|.++++.|..|++.+||+|+|.++++++|+.|+.....+|.++++++||+||+.++++
T Consensus 2 ~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred CcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 010543 114 EVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (507)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~ 192 (507)
.++...+.+||.++ ..++.+.+.+.+ .+..+.++|+++++++|++|++.++.+++..+.++|||||++|++.||++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTY-QGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEe-CCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 99999999999987 667888888887 6777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHHhhcccCC-CceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHH
Q 010543 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (507)
Q Consensus 193 ~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~-~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (507)
+||+.||++++++++||+|||++|++.... ...+++|||+||||+|+|++++.++.++++++.++..+||++||+.|++
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999999876543 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHH
Q 010543 272 YFIKLIKKKH-GKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (507)
Q Consensus 272 ~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (507)
|+.++|++++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++.++++.+++++|||++|+++++|+++++.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877 467778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEeccc
Q 010543 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (507)
Q Consensus 351 ~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (507)
++|++++++..+|+.|+|+||+|++|+|++.|++.|++..+....||+++||+|||++|+.+++......+++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 99999999999999999999999999999999999976778889999999999999999999875433467899999999
Q ss_pred ceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCC
Q 010543 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAF 506 (507)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i 506 (507)
+++|++..++.+.+||++|+++|+++++.|++..|+|+.+.|.||||++...++|..||+|.|+++|+.|+|.++|
T Consensus 401 ~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 401 LSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred cccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.8e-83 Score=678.38 Aligned_cols=461 Identities=51% Similarity=0.869 Sum_probs=427.3
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC-CcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
..+||||||||||+||++.+|.++++.|..|++.+||+|+|.+ +.+++|..|+.....+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 3689999999999999999999999999999999999999974 5899999999999999999999999999998765
Q ss_pred HHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (507)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~ 193 (507)
++...+.+||.+. ..+|...+.+.. ..+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~---~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 156 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPR---LEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRD 156 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 4556678899987 556665555433 347899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 194 aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
||+.||++++++++||+|||++|++... .+.+++|||+||||+|++++++.++.++++++.|+..+||++||+.|++|+
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l 235 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWL 235 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCC----cceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
.++|+++++.++..+++++.+|+.+||++|+.||...++.+.++.+..+ .++..+|||++|+++|+++++++.++|
T Consensus 236 ~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i 315 (668)
T PRK13410 236 AEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPV 315 (668)
T ss_pred HHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888889999999999999999999999888888876543 467889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecc
Q 010543 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (507)
Q Consensus 350 ~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (507)
+++|+++++.+.+|+.|+||||+|++|+|++.|++.| +..+....||++|||+|||++|+.+++. .+++.+.|++
T Consensus 316 ~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~ 390 (668)
T PRK13410 316 KRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVT 390 (668)
T ss_pred HHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeec
Confidence 9999999999999999999999999999999999999 5778888999999999999999998874 4588999999
Q ss_pred cceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 430 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 430 ~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
|+++|++..++.+.+|||+|+++|++++..|.+..|+|+.+.|.||||++....+|..||+|+|+|+|++|+|+++|+
T Consensus 391 p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~ 468 (668)
T PRK13410 391 PLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQ 468 (668)
T ss_pred cccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.8e-83 Score=678.93 Aligned_cols=460 Identities=55% Similarity=0.895 Sum_probs=426.5
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC-CcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHH
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (507)
.+||||||||||++|++.+|.+.++.|..|++.+||+|+|.+ +.+++|..|+.....+|.++++++|||||+.+++..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 689999999999999999999999999999999999999975 489999999999999999999999999999988764
Q ss_pred HhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 010543 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (507)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~a 194 (507)
...+.+||.++ ..++...+. + . ...++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~--i-~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQ--I-R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred -HHhhcCCceEEecCCCceEEE--E-C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 34578899887 445544443 3 2 367999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 195 a~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
|+.||++++++++||+|||++|++.....+.+++|||+||||+|++++++.++.++++++.|+..+||++||+.|++|+.
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999998876556788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccC----CcceEEeecHHHHHHHHHHHHHHHHHHHH
Q 010543 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (507)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (507)
++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++++.|||++|+++++|+++++.++|+
T Consensus 236 ~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 315 (653)
T PRK13411 236 ENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQ 315 (653)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999998888887643 35788999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEeccc
Q 010543 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (507)
Q Consensus 351 ~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (507)
++|+++++.+.+++.|+||||+|++|+|++.|++.|++..+....||+++||+|||++|+.+++. .+++.+.|++|
T Consensus 316 ~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p 391 (653)
T PRK13411 316 QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTP 391 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeeccc
Confidence 99999999999999999999999999999999999976778888999999999999999998764 56889999999
Q ss_pred ceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
+++|++..++.+.+||++|+++|+++++.|.+..|+|+.+.|.||||++...++|..||+|.|+|+|+.|+|+++|+
T Consensus 392 ~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 468 (653)
T PRK13411 392 LSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIE 468 (653)
T ss_pred ceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988763
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.7e-82 Score=676.50 Aligned_cols=461 Identities=57% Similarity=0.939 Sum_probs=429.9
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC-CcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|.+ +.+++|..|+.....+|+++++++||+||+.++++.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 4699999999999999999999999999999999999999975 589999999999999999999999999999999998
Q ss_pred HHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (507)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~ 193 (507)
++...+.+||.++ ..++...+. + . .+.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~--~-~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIE--A-Q--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEE--E-C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 8888899999988 455655544 3 2 36899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 194 aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
||+.||++++++++||+|||++|+.... .+.+++|||+||||+|++++++.++.++++++.|+..+||++||+.|++|+
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l 274 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYL 274 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987653 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCC----cceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
.++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++.++|||++|+++++|+++++.+++
T Consensus 275 ~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i 354 (663)
T PTZ00400 275 IAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPC 354 (663)
T ss_pred HHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999998888888766543 478899999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecc
Q 010543 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (507)
Q Consensus 350 ~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (507)
.++|+++++.+.+++.|+||||+|++|+|++.|++.| +.++....||+++||+|||++|+.+++. .+++.+.|++
T Consensus 355 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~ 429 (663)
T PTZ00400 355 EKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVT 429 (663)
T ss_pred HHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEEecc
Confidence 9999999999999999999999999999999999999 5677888999999999999999998764 4588999999
Q ss_pred cceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 430 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 430 ~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
|+++|++..++.+.+||++|+++|.++++.|++..|+|+.+.|.||||++...++|..||+|.|.|+|+.|+|.++|+
T Consensus 430 p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 507 (663)
T PTZ00400 430 PLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIE 507 (663)
T ss_pred ccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987763
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=2.2e-81 Score=668.17 Aligned_cols=461 Identities=54% Similarity=0.866 Sum_probs=426.3
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC-CcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|.+ +.+++|..|+.....+|.++++++|||||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 3699999999999999999999999999999999999999975 5899999999999999999999999999999865
Q ss_pred HHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (507)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~ 193 (507)
++...+.+||.++ ..+|...+.+.. ....++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~---~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPA---IGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 4566778999988 556666555544 336899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 194 aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
|++.||++++++++||+|||++|+.... .+.+++|||+||||+|+|++++.++.++++++.|+.++||++||+.|++|+
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccC----CcceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
.++|+.+++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.+++.+|||++|+++++++++++.++|
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999998888889999999999999999999999988888876542 3578889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecc
Q 010543 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (507)
Q Consensus 350 ~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (507)
+++|+++++.+.+|+.|+|+||+|++|.|++.|++.| +..+....||+++||+|||++|+.+++. .+++.+.|++
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~ 427 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVT 427 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecc
Confidence 9999999999999999999999999999999999999 5677788999999999999999998863 4578999999
Q ss_pred cceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 430 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 430 ~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
|++||+++.++.+.+|||+|+++|+++++.|.+..|+|+.+.|.||||++....+|..||+|+|+++|+.|+|.++|+
T Consensus 428 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 505 (673)
T PLN03184 428 PLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 505 (673)
T ss_pred cccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987763
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.8e-81 Score=667.12 Aligned_cols=458 Identities=62% Similarity=1.013 Sum_probs=426.5
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEec-CCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHH
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (507)
.+||||||||||++|++++|.++++.|..|++.+||+|+|. ++.+++|..|+.....+|.++++++||+||++ ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 68999999999999999999999999999999999999997 56899999999999999999999999999998 5567
Q ss_pred HhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 010543 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (507)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~a 194 (507)
+...+.+||.++ ..+|...+ .+ +| +.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~--~~-~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWV--EI-DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEE--EE-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 778889999998 44555444 34 33 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 195 a~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
|+.||++++++++||+|||++|++... .+.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+.
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 999999999999999999999987664 5788999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCC----cceEEeecHHHHHHHHHHHHHHHHHHHH
Q 010543 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVK 350 (507)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (507)
++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++.++|||++|+++++++++++.++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 314 (627)
T PRK00290 235 DEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCK 314 (627)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888899999999999999999999999999988876542 5788999999999999999999999999
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEeccc
Q 010543 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (507)
Q Consensus 351 ~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (507)
++|+++++.+.+++.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. .+++.+.|++|
T Consensus 315 ~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~ 389 (627)
T PRK00290 315 QALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTP 389 (627)
T ss_pred HHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccc
Confidence 999999999999999999999999999999999999 6778889999999999999999998863 55889999999
Q ss_pred ceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 431 ~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
+++|++..++.+.+|||+|+++|+++++.|.+..|+|+.+.|.||||++...++|..||+|.|+++|+.|+|.++|+
T Consensus 390 ~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 466 (627)
T PRK00290 390 LSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466 (627)
T ss_pred eEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987663
No 9
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=9.9e-81 Score=657.47 Aligned_cols=452 Identities=47% Similarity=0.750 Sum_probs=415.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC-cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHHH
Q 010543 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (507)
+||||||||||+||++.+|.++++.|..|++.+||+|+|.++ .+++|..|+.....+|.++++++||++|+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999865 89999999999999999999999999999887643
Q ss_pred hhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 010543 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (507)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa 195 (507)
. .+.+||.++ ..+|...+.+. . ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~--~---~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTV--Q---GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeC--C---CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 2 567899887 44555555432 2 378999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHH
Q 010543 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (507)
Q Consensus 196 ~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (507)
+.||++++++++||+|||++|++... ...+++|||+||||+|++++++.++.++++++.|+..+||++||+.|++++.+
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987654 56789999999999999999999999999999999999999999999999875
Q ss_pred HHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010543 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMED 355 (507)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 355 (507)
+ ++.+...+++.+.+|+.+||++|+.||...++.+.++. ++.++.++|||++|+++++|+++++.++++++|++
T Consensus 232 ~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~ 305 (599)
T TIGR01991 232 Q----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD 305 (599)
T ss_pred h----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 45555568889999999999999999999988888864 68899999999999999999999999999999999
Q ss_pred cCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecccceeeE
Q 010543 356 AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGI 435 (507)
Q Consensus 356 ~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~gi 435 (507)
+++.+.+++.|+||||+|++|+|++.|++.| +..+....||+++||+|||++|+.+++... .+++.+.|++|+++|+
T Consensus 306 a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~~~--~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 306 AGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRI--GNDLLLLDVTPLSLGI 382 (599)
T ss_pred cCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccccc--cCceEEEEeeeeeeEE
Confidence 9999999999999999999999999999999 566777899999999999999999987653 4578999999999999
Q ss_pred EEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 436 ETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 436 ~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
+..++.+.++||+|+++|++++..|++..|+|+.+.|.||||++....+|..||+|.|+|+|+.|+|+++|+
T Consensus 383 ~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 454 (599)
T TIGR01991 383 ETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIR 454 (599)
T ss_pred EecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998763
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.9e-80 Score=659.97 Aligned_cols=458 Identities=60% Similarity=0.963 Sum_probs=425.4
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC-cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHH
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (507)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.++ .+++|..|+.....+|.++++++||+||+++. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999865 89999999999999999999999999999883 36
Q ss_pred HhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 010543 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa 195 (507)
+...+.+||.+...+|...+.+ + .+.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~v---~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKVVGDGGDVRVKV---D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeEEcCCCceEEEE---C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6677889999666666655543 2 3679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHH
Q 010543 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (507)
Q Consensus 196 ~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (507)
+.||++++++++||+|||++|++.....+.+++|||+||||+|+|++++.++.++++++.|+..+||++||+.|++++.+
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 99999999999999999999988764567899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccC----CcceEEeecHHHHHHHHHHHHHHHHHHHHH
Q 010543 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (507)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (507)
+|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++.++|||++|+++++|+++++.+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888889999999999999999999999999888877653 356889999999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecccc
Q 010543 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (507)
Q Consensus 352 ~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (507)
+|+++++++.+++.|+|+||+|++|+|++.|++.| +.++....||+++||.|||++|+.+++. .+++.+.|++|+
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~ 388 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPL 388 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccc
Confidence 99999999999999999999999999999999999 4678889999999999999999998764 458899999999
Q ss_pred eeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCC
Q 010543 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAF 506 (507)
Q Consensus 432 ~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i 506 (507)
++|++..++.+.+||++|+++|++++++|++..|+|+.+.+.||||++...++|..||++.|+|+|+.|+|.++|
T Consensus 389 ~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i 463 (595)
T TIGR02350 389 SLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQI 463 (595)
T ss_pred eeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765
No 11
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-82 Score=640.96 Aligned_cols=475 Identities=68% Similarity=1.061 Sum_probs=458.3
Q ss_pred hccCCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCC
Q 010543 32 ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (507)
Q Consensus 32 ~~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (507)
..+.+.+||||||||+++++++.++.++++.|+.|++.+||+++|.++++++|..|..+...+|.++++++|+++|+.++
T Consensus 3 ~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 3 ATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred CccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 010543 112 DKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (507)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~ 190 (507)
++.++..++.||+.+. +.++.+.+.+.. +++.+.++|+++.++.|..+++.++.+++..+..+|+|||++|++.||++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~-~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~a 161 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTY-KGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAA 161 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecc-cccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHH
Confidence 9999999999999999 666789999998 77789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeEeechhhHHHHHhhcccCC-CceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHH
Q 010543 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (507)
Q Consensus 191 l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~-~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (507)
+.+|+..||++++++++||+|||++|++.+.. +..+++|+|+||||+|++++.+.++.+.+.++.++.++||++||+.|
T Consensus 162 t~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l 241 (620)
T KOG0101|consen 162 TKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKL 241 (620)
T ss_pred HHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHH
Confidence 99999999999999999999999999976653 67789999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
.+|+..+|+++++.++..++++.++|+.+||.+|+.||...++.++++++++|.++...|+|.+|++++.+++..+.+++
T Consensus 242 ~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v 321 (620)
T KOG0101|consen 242 VNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPV 321 (620)
T ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecc
Q 010543 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (507)
Q Consensus 350 ~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (507)
.++|+++.+++.+|+.|+||||++++|.++..+++.|+++.+..+.||+++||+||+++|+.+++.......++++.|+.
T Consensus 322 ~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~ 401 (620)
T KOG0101|consen 322 EKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVA 401 (620)
T ss_pred HHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecc
Confidence 99999999999999999999999999999999999999888999999999999999999999998877667899999999
Q ss_pred cceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 430 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 430 ~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
|.++|++..++.|.++|++|+.+|++++++|++..|+|+.+.|.||||++.+.++|.++|.|.|+|+||+|+|+|+|+
T Consensus 402 pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 402 PLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred cccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.6e-80 Score=655.95 Aligned_cols=460 Identities=57% Similarity=0.908 Sum_probs=424.9
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC-CcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
+.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+ +.+++|..|+.....+|.++++++||+||+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 3699999999999999999999999999999999999999975 4799999999999999999999999999998764
Q ss_pred HHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (507)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~ 193 (507)
+....+.+||.++ ..+|...+.+.. ....++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~---~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~ 156 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPA---LNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKD 156 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 4556677999988 455665555443 346799999999999999999999999889999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 194 aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
|++.||++++++++||+|||++|+.... .+..++|||+||||+|+|++++.++.++++++.++..+||++||+.|++++
T Consensus 157 Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 157 AGKIAGLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred HHHHcCCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccC----CcceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
.++|+++++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+ +.++...|+|++|+++++++++++.++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999999999999888888886643 2467889999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecc
Q 010543 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (507)
Q Consensus 350 ~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (507)
+++|+++++.+.+++.|+|+||+|++|.|++.|++.| +..+....||+++||+|||++|+.+++. .+++.+.|++
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~ 390 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVT 390 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeee
Confidence 9999999999999999999999999999999999999 5678888999999999999999998763 4578999999
Q ss_pred cceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCC
Q 010543 430 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAF 506 (507)
Q Consensus 430 ~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i 506 (507)
|+++|++..++.+.+|||+|+++|+++++.|.+..|+|+.+.+.||||++....+|..||+|.|+|+|+.|+|+++|
T Consensus 391 ~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i 467 (621)
T CHL00094 391 PLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQI 467 (621)
T ss_pred ceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=9.4e-80 Score=651.19 Aligned_cols=452 Identities=45% Similarity=0.758 Sum_probs=412.0
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
...+||||||||||+||++.+|.++++++..|++.+||+|+|.++++++|.+|+.....+|.++++++||++|+.+.+
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 347999999999999999999999999999999999999999988899999999999999999999999999998876
Q ss_pred HHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (507)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~ 193 (507)
++...+.+||.+. ..+|...+.+. + ..++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~~--~---~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 170 (616)
T PRK05183 96 IQQRYPHLPYQFVASENGMPLIRTA--Q---GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKD 170 (616)
T ss_pred hhhhhhcCCeEEEecCCCceEEEec--C---CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 3444567889887 44666655542 2 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 194 aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
|++.||++++++++||+|||++|++... .+.+++|||+||||+|+|++++.++.++++++.|+..+||++||+.|++++
T Consensus 171 Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~ 249 (616)
T PRK05183 171 AARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI 249 (616)
T ss_pred HHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHH
Q 010543 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l 353 (507)
.+++ +.+...+++.+.+|+.+||++|+.||...++.+.++.+ ...|||++|+++++|+++++.++++++|
T Consensus 250 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L 319 (616)
T PRK05183 250 LEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRAL 319 (616)
T ss_pred HHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 33444678889999999999999999999888887532 2249999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEeccccee
Q 010543 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTL 433 (507)
Q Consensus 354 ~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~ 433 (507)
+++++.+.+++.|+|+||+|++|+|++.|++.| +..+....||+++||+|||++|+.+++... .+++.+.|++|+++
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~~~--~~~~~l~dv~p~sl 396 (616)
T PRK05183 320 RDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKP--DSDMLLLDVIPLSL 396 (616)
T ss_pred HHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccccc--cCceEEEeeccccc
Confidence 999999999999999999999999999999999 556677899999999999999999887543 46899999999999
Q ss_pred eEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 434 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 434 gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
|++..++.+.++||+|+++|+++++.|++..|+|+.+.+.||||++....+|..||+|+|+|+|+.|+|.++|+
T Consensus 397 gi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 470 (616)
T PRK05183 397 GLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIR 470 (616)
T ss_pred cceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988763
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-80 Score=599.64 Aligned_cols=464 Identities=60% Similarity=0.943 Sum_probs=444.1
Q ss_pred ccCCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC-cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCC
Q 010543 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (507)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (507)
.....++|||+|||||++++..++.+.++.|..|++.+||+++|..+ .+++|..|+.+...||.++++.-||++|+++.
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 45668999999999999999999999999999999999999999655 89999999999999999999999999999999
Q ss_pred CHHHHhhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 010543 112 DKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (507)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~ 190 (507)
+++++.+++..||+++ .++|...++. .++.++|.++.+++|.+++++++.+++..+...|+|||+||++.||++
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~-----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqa 178 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEA-----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQA 178 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEe-----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHH
Confidence 9999999999999999 7788766654 457999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHH
Q 010543 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (507)
Q Consensus 191 l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~ 270 (507)
+++|.+.+|++++++++||+|||++|+++... +..++|+|+||||+|+++..+.++.+++.++.++.++||++||..+.
T Consensus 179 Tkdag~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 179 TKDAGQIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hHhhhhhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 99999999999999999999999999999875 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCC----cceEEeecHHHHHHHHHHHHHHHH
Q 010543 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTM 346 (507)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~ 346 (507)
+++..+|++..++++..+.+++++|++.+|++|..||...+.++.++.+..+ ..+++++||.+||+++.+++++.+
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999998877655 567899999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEE
Q 010543 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLL 426 (507)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 426 (507)
+++.++|+++++..++|+.|+|+||.+|+|.+++.+++.| ++......||+++||.|||+++..+++. +++.++.
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLL 412 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLL 412 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeee
Confidence 9999999999999999999999999999999999999999 6788889999999999999999998875 7799999
Q ss_pred ecccceeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCC
Q 010543 427 DVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAF 506 (507)
Q Consensus 427 ~~~~~~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i 506 (507)
|++|.++|+++.++.|..++++++.||..++..|.+..|+|+.++|.+++|++++.++|+.+|.|++.|+||.|+|.|+|
T Consensus 413 dVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqi 492 (640)
T KOG0102|consen 413 DVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQI 492 (640)
T ss_pred ecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 010543 507 N 507 (507)
Q Consensus 507 ~ 507 (507)
+
T Consensus 493 e 493 (640)
T KOG0102|consen 493 E 493 (640)
T ss_pred e
Confidence 6
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.9e-78 Score=648.70 Aligned_cols=465 Identities=54% Similarity=0.878 Sum_probs=427.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHHHh
Q 010543 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQR 117 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~ 117 (507)
||||||||+||+||++.++.++++.+..|++++||+|+|.++++++|..|......+|.++++++|+|||+.+++..++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q 010543 118 DMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGI 196 (507)
Q Consensus 118 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~ 196 (507)
..+.+|+.++ .++|...+++.. .|....++|+++++++|+++++.++.+++..+.++|||||++|+..||+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDY-DGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEE-TTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccc-cccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 9999999998 558889999887 67778999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHH
Q 010543 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (507)
Q Consensus 197 ~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~ 276 (507)
.||++++++++||+|||++|++.....+.++||||+||||+|++++++.++.+++++..++..+||++||+.|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887766789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccCHHHHHHHHHHHHHHHHHhcc--CcEEEEEEeeccC-CcceEEeecHHHHHHHHHHHHHHHHHHHHHHH
Q 010543 277 IKKKHGKDISKDKRAIGKLRREAERAKRALSS--QHQVRVEIESLFD-GIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (507)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~--~~~~~~~i~~~~~-~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l 353 (507)
++++++.+...+++.+.+|+.+||++|+.||. ..+..+.++.+.+ |.++.++|+|++|+++++|+++++.++|+++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 99999888888999999999999999999999 6778888888887 88999999999999999999999999999999
Q ss_pred HHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEeccccee
Q 010543 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTL 433 (507)
Q Consensus 354 ~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~ 433 (507)
++++.+..+|++|+|+||+|++|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++... .+++.+.|++|++|
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~~~--~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGSFR--VKDIKIIDVTPFSI 396 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTSCS--STSSCESEBESSEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccccc--cccccccccccccc
Confidence 9999999999999999999999999999999995 77888899999999999999999887544 66788999999999
Q ss_pred eEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCC
Q 010543 434 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAF 506 (507)
Q Consensus 434 gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i 506 (507)
|++..++.+.+++++|+++|...+..|.+..++|+.+.+.||+|++....+|..||+++|+++|+.|+|.++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i 469 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKI 469 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccce
Confidence 9999999999999999999999998899999999999999999999999999999999999999999998765
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.6e-76 Score=619.19 Aligned_cols=426 Identities=37% Similarity=0.590 Sum_probs=374.8
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCH--
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK-- 113 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~-- 113 (507)
..+||||||||||++|++.+|.++++.|+.|++.+||+|+|.++++++|..| +++++||++|+++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 4699999999999999999999999999999999999999998889999977 7899999999987652
Q ss_pred --HHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 010543 114 --EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (507)
Q Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l 191 (507)
......+. .... +...+.+.+ ..+.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~-~~~~~~~~~---~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDV-NSSELKLNF---ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeec-CCCeeEEEE---CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 11111111 1111 122233444 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHH
Q 010543 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (507)
Q Consensus 192 ~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (507)
++|++.||++++++++||+|||++|++... ....++|||+||||+|+|++++.++.++++++.|+..+||++||+.|++
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~ 239 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQ 239 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHH
Confidence 999999999999999999999999987654 4568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHH
Q 010543 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (507)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (507)
|+.+++.. ..+.+ .++.||++|+.||....... ..++|||++|+++++|+++++.+++++
T Consensus 240 ~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~ 299 (595)
T PRK01433 240 YLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQE 299 (595)
T ss_pred HHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99877632 12222 23469999999998765321 178899999999999999999999999
Q ss_pred HHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecccc
Q 010543 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (507)
Q Consensus 352 ~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (507)
+|++++ ..+++.|+||||+|++|+|++.|++.| +.++....||+++||+|||++|+.+++.. .++++.|++|+
T Consensus 300 ~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~~----~~~~l~Dv~p~ 372 (595)
T PRK01433 300 CLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAPH----TNSLLIDVVPL 372 (595)
T ss_pred HHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCCc----cceEEEEeccc
Confidence 999998 568999999999999999999999999 56778889999999999999999987643 47889999999
Q ss_pred eeeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 432 ~~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
++|++..++.+.+||++|+++|+++++.|++..|+|+.+.|.||||++....+|..||+|+|+|+|++|+|+++|+
T Consensus 373 slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 448 (595)
T PRK01433 373 SLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAE 448 (595)
T ss_pred ceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-75 Score=609.37 Aligned_cols=444 Identities=59% Similarity=0.915 Sum_probs=417.4
Q ss_pred CCcEEEEEcCccceEEEEEECC-eEEEEeCCCCCcccceEEEecCC-cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCC
Q 010543 35 LGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (507)
.+.+||||||||||++|+++++ .+.++.|..|.+.+||+|+|..+ ++++|..|+.+...+|.++++.+|+++|+....
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 4578999999999999999988 79999999999999999999977 599999999999999999999999999986111
Q ss_pred HHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 010543 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (507)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~ 192 (507)
..+.+.+ . .+.++|+++.+++|+++++.++.+++..+..+|||||++|++.||++++
T Consensus 84 --------------------~~~~~~~-~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 84 --------------------LKISVEV-D--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------Ccceeee-C--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 1112233 2 2689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHH
Q 010543 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (507)
Q Consensus 193 ~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 272 (507)
+|++.||++++++++||+|||++|++... .+..++|||+||||||+|++++.++.++++++.|+.++||++||.+|.++
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHH
Confidence 99999999999999999999999999887 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHH
Q 010543 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKA 352 (507)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 352 (507)
+.++|+.+++.++..++..+++|+..||++|+.||...+..+.++....+.++..+|+|++||+++.+++.++.+.+..+
T Consensus 220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887777788899999999999999999999999999
Q ss_pred HHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecccce
Q 010543 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLT 432 (507)
Q Consensus 353 l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~ 432 (507)
+.+++++..+|+.|+|+||++|+|.+++.+++.|+ +.+....||+++||.|||++|..+++... ++++.|+.|.+
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~~----d~ll~Dv~pls 374 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLS 374 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCccc----CceEEeeeeec
Confidence 99999999999999999999999999999999994 88899999999999999999999887642 88999999999
Q ss_pred eeEEEeCCEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcceeEEEEeCCCCCCCCcCCCC
Q 010543 433 LGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRFVSAFN 507 (507)
Q Consensus 433 ~gi~~~~~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~ig~~~l~~~p~~~~g~~~i~ 507 (507)
+|++..++.+..++++++.+|.+++..|.+..|+|..+.+.+++|++....+|..+|.|.+.++||+|+|.++|+
T Consensus 375 lgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~ 449 (579)
T COG0443 375 LGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIE 449 (579)
T ss_pred cccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-68 Score=530.70 Aligned_cols=459 Identities=37% Similarity=0.602 Sum_probs=433.2
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHHH
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (507)
.++|||||+.+|.+|+.+.+.+++|.|+.++|.+|++++|.+.++++|.+|......++.+++..+||++|+.++++.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEe-ccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 010543 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (507)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa 195 (507)
.+.+.+|+.++ .+||...+.+.+ .|+.+.+++++|++|+|.+++..+++.+..++.+|||+||++|++.||+++.+||
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~y-lge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEY-LGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hcccccchheeecCCCCcceeehc-ccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999 889999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHHhhcccCC------CceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHH
Q 010543 196 IIAGLNVARIINEPTAAAIAYGLDKKG------GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (507)
Q Consensus 196 ~~agl~~~~li~Ep~Aaa~~~~~~~~~------~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (507)
+.||++++++++|-+|+|++|+..+.+ ++.+++++|+|.+.+.++++.++.+.++++++.++..+||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999998764 46789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
.+|+.++|+.+|++++..++++..||+..||+.|+.||.+.....+++.++++.|.+..|+|++||+++.|+++++..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCCCCCCcceEEEecc
Q 010543 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (507)
Q Consensus 350 ~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (507)
.++|++++++..+|+.|.+|||+||+|.+++.|.+.| ++...++.|.++|||+|||++++++++.++ ++++-++|+.
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~fr--VRef~v~Di~ 397 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPTFR--VREFSVEDIV 397 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcccc--ceecceeccc
Confidence 9999999999999999999999999999999999999 899999999999999999999999999886 8889999999
Q ss_pred cceeeEEEe----C-CEEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecC-CcCcccCcceeEEEEeCCCCCCCCc
Q 010543 430 PLTLGIETV----G-GVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGE-RSLTKDCRLLGKFDLSGIPPAPRFV 503 (507)
Q Consensus 430 ~~~~gi~~~----~-~~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~ig~~~l~~~p~~~~g~ 503 (507)
|+++.+.+. + +....+||+|.++|..+..+|....+ +.+.+++.. ..++.....|++++++++.+...|+
T Consensus 398 pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~----F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGP----FTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred ceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCc----eEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 999988764 2 45578999999999888888776543 777777765 6666566889999999998876653
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-62 Score=485.95 Aligned_cols=452 Identities=35% Similarity=0.531 Sum_probs=399.2
Q ss_pred CCcEEEEEcCccceEEEEEECC-eEEEEeCCCCCcccceEEEecCCcEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCH
Q 010543 35 LGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (507)
...+++||+|+.++++++..+| ..+++.|...+|++|++|+|.++.|+||.+|.....++|+.++..++.++|+...++
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 3479999999999999999998 578999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcccCC-eEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 010543 114 EVQRDMKLAP-YKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (507)
Q Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~ 192 (507)
.+....+++| +.++....+..+.+.+ .+ ...|+++++++|+|.+.++.|+.+...++.++|||||.+|++.||+++.
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i-~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKI-SD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEe-CC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 7776666666 4555444677777776 22 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHHhhcccCC----CceeEEEEEcCCcceEEEEEEEe----------CCeEEEEEEcCCC
Q 010543 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTID----------NGVFEVLSTNGDT 258 (507)
Q Consensus 193 ~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~----~~~~~lv~D~Gggt~dvsv~~~~----------~~~~~v~~~~~~~ 258 (507)
+|++.||++++.+|+|-+|+|+.|++.+.. ...++++||+|+|.|.++++.+. ...+++++...+.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999998643 67899999999999999999874 1478899999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcC--CCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHH
Q 010543 259 HLGGEDFDQRVMEYFIKLIKKKHG--KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEE 336 (507)
Q Consensus 259 ~~GG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~ 336 (507)
.+||..|+.+|.+++.+.|.++++ .++..+++++.+|.++|+++|..||.+.++...++++.++.|+..+|||++||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 999999999999999999998876 467789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCC
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~ 416 (507)
+|.++..++..+|+++|..++++.++|+.|+|.||++|+|.||+.|.+..+...+....|.|+|+++||+++|+.|+..+
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999777888999999999999999999999988
Q ss_pred CCCCcceEEEecccceeeEEEeCC--------EEEEEEeCCCCcCceeEEEEEeecCCceeEEEEEEecCCcCcccCcce
Q 010543 417 GDETKDILLLDVAPLTLGIETVGG--------VMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLL 488 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~~~gi~~~~~--------~~~~ii~~g~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~i 488 (507)
. ++++.+.|...++|-++..+. ....+|+++.++|..+..+|+...|+ +.+.+-.|.-. .-+
T Consensus 419 K--vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl 488 (902)
T KOG0104|consen 419 K--VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNL 488 (902)
T ss_pred c--ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCc
Confidence 6 889999999988887765432 23458999999999887777665543 33333222210 123
Q ss_pred eEEEEeCCCC
Q 010543 489 GKFDLSGIPP 498 (507)
Q Consensus 489 g~~~l~~~p~ 498 (507)
.+++|.|+..
T Consensus 489 ~~velsgV~d 498 (902)
T KOG0104|consen 489 TTVELSGVKD 498 (902)
T ss_pred cEEEEecchH
Confidence 4667766654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.6e-54 Score=439.58 Aligned_cols=337 Identities=27% Similarity=0.394 Sum_probs=285.9
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEec----------------------------------------
Q 010543 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT---------------------------------------- 77 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 77 (507)
++|||||||||++|++++|.++++++..|++.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred -CCcEEEcHhHHhhhhhCCChh--HHHhHHhcCCCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHH
Q 010543 78 -DSERLIGEAAKNQAAVNPDRT--IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISA 154 (507)
Q Consensus 78 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ 154 (507)
++..++|.+|++.+..+|+.+ +.++|++||...-.. .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 346789999999999999888 779999998642110 12234899999
Q ss_pred HHHHHHHHHHHHHhCCCcCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeEeechhhHHHHHhhcccCCCcee
Q 010543 155 MILTKMKETAEAFLGKKIKDAVVTVPAYFN-----DAQRQA---TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKN 226 (507)
Q Consensus 155 ~~L~~l~~~~~~~~~~~~~~~viTVP~~~~-----~~qr~~---l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~ 226 (507)
.+|+++++.++.+++.++.++|||||++|+ +.||++ +++||+.||++.+.+++||+|||++|+.... .+..
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~ 210 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKR 210 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCe
Confidence 999999999999999999999999999998 777765 7999999999999999999999999986543 5788
Q ss_pred EEEEEcCCcceEEEEEEEeCC-------eEEEEEEcCCCCCchHHHHHHHH-HHHHHHHHh----hcCCCC---------
Q 010543 227 ILVFDLGGGTFDVSILTIDNG-------VFEVLSTNGDTHLGGEDFDQRVM-EYFIKLIKK----KHGKDI--------- 285 (507)
Q Consensus 227 ~lv~D~Gggt~dvsv~~~~~~-------~~~v~~~~~~~~~GG~~id~~l~-~~l~~~~~~----~~~~~~--------- 285 (507)
+||+|+||||+|+|++++.++ ..+++++.| ..+||++||+.|+ +++...|.+ +.+.++
T Consensus 211 vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~ 289 (450)
T PRK11678 211 VLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAV 289 (450)
T ss_pred EEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhh
Confidence 999999999999999998653 357888888 6899999999998 677766642 111110
Q ss_pred --------------------------ccCHHHH------------HHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEE
Q 010543 286 --------------------------SKDKRAI------------GKLRREAERAKRALSSQHQVRVEIESLFDGIDFSE 327 (507)
Q Consensus 286 --------------------------~~~~~~~------------~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~ 327 (507)
..+++.+ .+|+.+||++|+.||...++.+.++.+. .++..
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~ 367 (450)
T PRK11678 290 AINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLAT 367 (450)
T ss_pred hhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcce
Confidence 0122222 3688999999999999999998887553 45778
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHH
Q 010543 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~ 407 (507)
+|+|++|+++++++++++.++++++|+++++. ++.|+||||+|++|++++.+++.|++.++. ..+|.++||.|+|+
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~ 443 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLAR 443 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHH
Confidence 99999999999999999999999999999876 579999999999999999999999765554 56999999999999
Q ss_pred hhhhh
Q 010543 408 QGGIL 412 (507)
Q Consensus 408 ~a~~~ 412 (507)
+|...
T Consensus 444 ~a~~~ 448 (450)
T PRK11678 444 WAQVV 448 (450)
T ss_pred HHHhh
Confidence 98753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=6.9e-39 Score=318.31 Aligned_cols=307 Identities=27% Similarity=0.389 Sum_probs=236.0
Q ss_pred EEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC--c-EEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHHH
Q 010543 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS--E-RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (507)
Q Consensus 39 iGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (507)
+||||||+||+++.. ++..++. .||++++..+ . ..+|++|+......|.+... .+
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------IR------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------Ec-------
Confidence 899999999999876 3334443 4999999954 2 47899997665444433220 00
Q ss_pred HhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 010543 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa 195 (507)
|. .+| .+...+....+++++++.+..........+++|||++|+..||+++++|+
T Consensus 64 -------pi---------------~~G---~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 64 -------PL---------------RDG---VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -------cC---------------CCC---eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 00 022 23445666777888776554322223346999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHH
Q 010543 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (507)
Q Consensus 196 ~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (507)
+.||++.+.+++||+|||++|+.... ++..++|+|+||||||+++++..... ..++..+||++||+.|++++.+
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 45668999999999999999975322 3457899999999999999876
Q ss_pred HHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCc----EEEEEE--eeccCCcceEEeecHHHHHHHHHHHHHHHHHHH
Q 010543 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (507)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~----~~~~~i--~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (507)
++.. ... ...||++|+.++... +..+.+ ..+..+.+..++|++++|++++++.++++.+.|
T Consensus 193 ~~~~----~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i 259 (336)
T PRK13928 193 KYKL----LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAV 259 (336)
T ss_pred Hhch----hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHH
Confidence 6532 221 267999999986531 122332 233456677899999999999999999999999
Q ss_pred HHHHHHcC--CCcCCCC-eEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhh
Q 010543 350 KKAMEDAG--LEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 350 ~~~l~~~~--~~~~~i~-~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~ 412 (507)
.+.|++++ +..+.++ .|+|+||+|++|++++.+++.| +.++....||+++||+||++++..+
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999986 4456677 7999999999999999999999 6788888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.7e-38 Score=313.01 Aligned_cols=305 Identities=26% Similarity=0.393 Sum_probs=240.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC-c--EEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
.+||||||+|+++ +.+++.. +.+ .||+|+++.+ + ..+|++|+....++|.++... + +.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi---- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PM---- 66 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cC----
Confidence 5999999999975 4555443 334 3999999854 2 579999988877777654421 1 10
Q ss_pred HHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcC--cEEEEeCCCCCHHHHHHHH
Q 010543 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK--DAVVTVPAYFNDAQRQATK 192 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~--~~viTVP~~~~~~qr~~l~ 192 (507)
.+| .+..-++++.+|+++++.++..++..+. .+|||||++|+..||+++.
T Consensus 67 -------------------------~~G---~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 67 -------------------------KDG---VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred -------------------------CCC---ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 022 1233478899999999988877765443 7999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHH
Q 010543 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (507)
Q Consensus 193 ~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 272 (507)
+|++.||++.+.+++||+|||++|++... ....++|+|+|+||+|+++++..... ..++..+||++||+.|.++
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~ 192 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSF 192 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999976543 46678999999999999999865422 3455789999999999999
Q ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCc----EEEEEEe--eccCCcceEEeecHHHHHHHHHHHHHHHH
Q 010543 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTM 346 (507)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 346 (507)
+.+.+ +.... ...||++|+.++... ...+.+. ++..+.+..+++++++|++++.+++.++.
T Consensus 193 l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~ 259 (335)
T PRK13929 193 VRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHIL 259 (335)
T ss_pred HHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHH
Confidence 86543 33322 168999999998631 2223332 23455667899999999999999999999
Q ss_pred HHHHHHHHHcCCC--cCCCC-eEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhh
Q 010543 347 GPVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 347 ~~i~~~l~~~~~~--~~~i~-~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a 409 (507)
+.|.+.|+++... .+.++ .|+|+||+|++|++.+++++.| +.++....||+++||+||+..-
T Consensus 260 ~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 260 EAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 9999999997533 35677 6999999999999999999999 6788888899999999999864
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.4e-36 Score=298.67 Aligned_cols=306 Identities=26% Similarity=0.404 Sum_probs=227.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC---cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
.|||||||++++++....+ .++ .+||+|++.++ ...+|++|......+|.++.. .
T Consensus 7 ~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~--~----------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA--I----------- 64 (334)
T ss_pred eeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--E-----------
Confidence 5999999999998543332 233 26999999754 258999998776554433210 0
Q ss_pred HHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~a 194 (507)
.| +.+|....+ +....+++++......... ....+++|+|++|+..||++++.|
T Consensus 65 -------~p---------------i~~G~i~d~---~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 65 -------RP---------------MKDGVIADF---DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -------ec---------------CCCCeecCH---HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHH
Confidence 00 012221222 3344555555544333222 123799999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 195 a~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
++.+|++.+.+++||+|||++|+.... ....++|+|+||||||+++++.+... ..++..+||++||+.|.+++.
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVR 192 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHH
Confidence 999999999999999999999977543 45668999999999999999876433 345568999999999999987
Q ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcE----EEEEE--eeccCCcceEEeecHHHHHHHHHHHHHHHHHH
Q 010543 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (507)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~----~~~~i--~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 348 (507)
+++ +.... ...+|++|+.++.... ..+.+ +.+..+.+..++|+|++|++++.+.++++.+.
T Consensus 193 ~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 259 (334)
T PRK13927 193 RNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEA 259 (334)
T ss_pred HHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHH
Confidence 554 32221 1578999999875322 22322 33445667788999999999999999999999
Q ss_pred HHHHHHHcCCC--cCCCC-eEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 349 VKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 349 i~~~l~~~~~~--~~~i~-~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
|.++|++++.. .+.++ .|+|+||+|++|+++++|++.| +.++....+|+++||+||++++..
T Consensus 260 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 260 VKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999997533 23344 5999999999999999999999 678888889999999999998865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=5.2e-36 Score=297.48 Aligned_cols=306 Identities=26% Similarity=0.379 Sum_probs=224.7
Q ss_pred EEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC-----c--EEEcHhHHhhhhhCCChhHHHhHHhcCCCCC
Q 010543 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (507)
Q Consensus 39 iGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (507)
+||||||+||.++....+ .++ ..||+|+|.++ + ..+|++|+......|++.. +++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC-----
Confidence 999999999998885444 233 25999999743 3 6799999765544443221 01111
Q ss_pred CHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 010543 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (507)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l 191 (507)
.+|.... -+.+..++++++....+..+.....+++|||++|+..||+++
T Consensus 69 ----------------------------~~G~i~d---~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 69 ----------------------------KDGVIAD---FEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ----------------------------CCCEEEc---HHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 0222122 233444455554443322121223799999999999999999
Q ss_pred HHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHH
Q 010543 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (507)
Q Consensus 192 ~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (507)
++|++.+|++.+.+++||+|||++|+.... ....++|+|+||||||+++++.++.. ..++..+||++||+.|++
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHH
Confidence 999999999999999999999999976543 45678999999999999999876432 345568999999999999
Q ss_pred HHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcE-----EEEEEe--eccCCcceEEeecHHHHHHHHHHHHHH
Q 010543 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ-----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRK 344 (507)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~-----~~~~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~ 344 (507)
++.+++ +.... ++.||++|+.++.... ..+.+. ....+......|+++++.+++.+.+++
T Consensus 192 ~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 258 (333)
T TIGR00904 192 YIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQ 258 (333)
T ss_pred HHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHH
Confidence 987554 22221 2679999999875321 122221 112344556789999999999999999
Q ss_pred HHHHHHHHHHHcCCC-cCCC-C-eEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 345 TMGPVKKAMEDAGLE-KNQI-D-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 345 i~~~i~~~l~~~~~~-~~~i-~-~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
+.+.+.+.+++++.. ..++ + .|+|+||+|++|+++++|++.| +.++....||+++||.||+++...
T Consensus 259 i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 259 IVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999987643 2233 3 6999999999999999999999 788888899999999999998754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.3e-35 Score=291.94 Aligned_cols=307 Identities=26% Similarity=0.364 Sum_probs=231.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC---cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCHH
Q 010543 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (507)
.+||||||++++++++.++ .++ .+||+|++.+. ..++|++|+......|.+.. ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~----------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI----------- 67 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee-----------
Confidence 3999999999999887443 233 14999999752 46899999876544443211 00
Q ss_pred HHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 010543 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~a 194 (507)
.| +.+|. +...+....+++++++............+++|+|++|+..+|+.+.++
T Consensus 68 -------~p---------------i~~G~---i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 68 -------RP---------------LKDGV---IADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred -------ec---------------CCCCe---EcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 01 01221 122345677777777665543334457899999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 195 a~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
++.+|++.+.+++||+|||++++.... .....+|+|+|+||||++++..+... ..+...+||.+||+.|.+++.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~ 196 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVR 196 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHH
Confidence 999999999999999999999976543 34467999999999999999865432 345679999999999999987
Q ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcE----EEEEEe--eccCCcceEEeecHHHHHHHHHHHHHHHHHH
Q 010543 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (507)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~----~~~~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 348 (507)
+++ +.... ...||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+.
T Consensus 197 ~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 263 (335)
T PRK13930 197 RKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEA 263 (335)
T ss_pred HHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHH
Confidence 653 32222 1679999999975432 122222 2334556688899999999999999999999
Q ss_pred HHHHHHHcCCC--cCCCCe-EEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 349 VKKAMEDAGLE--KNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 349 i~~~l~~~~~~--~~~i~~-V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
+.+.++++... .+.++. |+|+||+|++|+++++|++.| +.++....+|++++|.||++.+..
T Consensus 264 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 264 VKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 99999986532 233454 999999999999999999999 577888889999999999998854
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=9e-34 Score=273.82 Aligned_cols=307 Identities=29% Similarity=0.412 Sum_probs=219.0
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC---cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCCCH
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (507)
.-+||||||+|+.++....| ++.+ .||+|+++.+ -..+|++|+.. +|+...+-
T Consensus 2 ~~igIDLGT~~t~i~~~~~G---iv~~------epSvVA~~~~~~~i~avG~~A~~m---------------~gktp~~i 57 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG---IVLN------EPSVVAYDKDTGKILAVGDEAKAM---------------LGKTPDNI 57 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE---EEEE------EES-EEEETTT--EEEESHHHHTT---------------TTS-GTTE
T ss_pred CceEEecCcccEEEEECCCC---EEEe------cCcEEEEECCCCeEEEEhHHHHHH---------------hhcCCCcc
Confidence 35999999999988443344 2222 2999999865 35689999554 44332221
Q ss_pred HHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH
Q 010543 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~ 193 (507)
.+.. | +.+| .+..-++...+|+++.+.+.......-.+++++||+.-++-+|+++.+
T Consensus 58 ~~~~-----P---------------l~~G---vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 58 EVVR-----P---------------LKDG---VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp EEE------S---------------EETT---EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred EEEc-----c---------------ccCC---cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 1111 1 1144 344456778888888887766422334579999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 194 aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
|+..+|...+.+++||.|||+..++.-. +....+++|+||||||++++....-. .......||+++|+.+.+|+
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislggiv-----~s~si~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGGIV-----ASRSIRIGGDDIDEAIIRYI 188 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCCEE-----EEEEEEecCcchhHHHHHHH
Confidence 9999999999999999999999988765 45677999999999999999743221 22235889999999999996
Q ss_pred HHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC------cEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHH
Q 010543 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMG 347 (507)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 347 (507)
.+++ +..+.. ..||++|++++.. ...++.-.++..|...++.|+.+++.+.+++.+.+|.+
T Consensus 189 r~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~ 255 (326)
T PF06723_consen 189 REKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVE 255 (326)
T ss_dssp HHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHH
Confidence 6555 444444 8899999998754 23555556678899999999999999999999999999
Q ss_pred HHHHHHHHcCCC-cCCC--CeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhh
Q 010543 348 PVKKAMEDAGLE-KNQI--DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 348 ~i~~~l~~~~~~-~~~i--~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~ 410 (507)
.|+++|++..-. ..|+ +.|+|+||+|+++++.+.|++.+ +.++....+|.++||.||.....
T Consensus 256 ~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 256 AIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999974211 1122 46999999999999999999999 79999999999999999987653
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.98 E-value=9.6e-31 Score=242.33 Aligned_cols=309 Identities=28% Similarity=0.406 Sum_probs=242.9
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC--C---cEEEcHhHHhhhhhCCChhHHHhHHhcCCCCC
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD--S---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (507)
..+|||+||.|+.+..-..| ++.++ ||+|++.. + -..+|.+| |+++|+...
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 36999999999998766344 44444 99999987 3 35689999 677777655
Q ss_pred CHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhC-CCcCcEEEEeCCCCCHHHHHH
Q 010543 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG-KKIKDAVVTVPAYFNDAQRQA 190 (507)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~-~~~~~~viTVP~~~~~~qr~~ 190 (507)
+...-+.++ +| .+..-++...+++++.+....... ....++++.||..-++-+|++
T Consensus 63 ni~aiRPmk--------------------dG---VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIVAIRPMK--------------------DG---VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred CceEEeecC--------------------Cc---EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 432211111 33 344556777788888777654322 344579999999999999999
Q ss_pred HHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHH
Q 010543 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (507)
Q Consensus 191 l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~ 270 (507)
+++|++.||...+.++.||.|||+..++.-.. +..-+|+|+||||||++++.+.+-. +.....+||+.+|+.+.
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~e-p~G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD~~De~Ii 193 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIME-PTGSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAII 193 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccC-CCCCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecchhhHHHH
Confidence 99999999999999999999999998776553 3345899999999999999987654 34557899999999999
Q ss_pred HHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC--------cEEEEEEeeccCCcceEEeecHHHHHHHHHHHH
Q 010543 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ--------HQVRVEIESLFDGIDFSEPLTRARFEELNNDLF 342 (507)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~--------~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~ 342 (507)
+|+. ++|+..+.+ +.+|++|...... .+.++.-.++..|....++++.+++.+.+++.+
T Consensus 194 ~yvr----~~~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v 260 (342)
T COG1077 194 VYVR----KKYNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPL 260 (342)
T ss_pred HHHH----HHhCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHH
Confidence 9955 555655555 6689999887432 235566667778889999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CCcCCCCe-EEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhh
Q 010543 343 RKTMGPVKKAMEDAG--LEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 343 ~~i~~~i~~~l~~~~--~~~~~i~~-V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~ 412 (507)
++|.+.++..|++.. +..+-++. ++|+||+|.+..+.+.|.+.. +.++....+|-.+||+|+......+
T Consensus 261 ~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 261 NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhh
Confidence 999999999999853 33344455 999999999999999999998 7888889999999999998876554
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.7e-30 Score=243.80 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=174.3
Q ss_pred EeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCce
Q 010543 146 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEK 225 (507)
Q Consensus 146 ~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~ 225 (507)
.+..-+..+.+|+++++.++..++.++.++|+|||++|++.||+++.+|++.||+++..++.||.|++++|...
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34456778899999999999888888899999999999999999999999999999999999999999988543
Q ss_pred eEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH
Q 010543 226 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRA 305 (507)
Q Consensus 226 ~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 305 (507)
..+|+|+||||+|+++++. +.+ + ...+..+||++||+.|.+.+ +.+. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~i--~-~~~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GKV--I-YSADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--CeE--E-EEEeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2499999999999999874 322 1 24457899999999887653 2221 789999987
Q ss_pred hccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhh
Q 010543 306 LSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY 385 (507)
Q Consensus 306 ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~ 385 (507)
++ +.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|++++.+++.
T Consensus 165 ~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 54 245678899999999999999999864 367899999999999999999999
Q ss_pred cCCCCCCCCCCcchhhhhhHHH
Q 010543 386 FDGKEPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 386 ~~~~~v~~~~~p~~ava~GAa~ 407 (507)
| +.++..+.||++++|.|||+
T Consensus 218 l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 L-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred h-CCCcccCCCCCeehhheeec
Confidence 9 78888899999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=1.3e-27 Score=228.28 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEE
Q 010543 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (507)
Q Consensus 150 ~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv 229 (507)
.+.....|+++++.++...+.++..++++||++|+..+++.+.++++.||+++..++.||.|++.+|... ..++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 5667788899999999988888899999999999999999999999999999999999999999987542 2589
Q ss_pred EEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC
Q 010543 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 309 (507)
Q Consensus 230 ~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 309 (507)
+|+||||||+++++ ++.+. ..++..+||++||+.|++++ +.+ ..+||++|+.++
T Consensus 140 vDIGggtt~i~v~~--~g~~~---~~~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILK--DGKVV---YSADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEE--CCeEE---EEecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhccC--
Confidence 99999999999986 33321 23467999999999998774 211 278899998652
Q ss_pred cEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCC
Q 010543 310 HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK 389 (507)
Q Consensus 310 ~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~ 389 (507)
+++++.+++++.++++.+.+++.+++. .++.|+|+||+|++|++++.+++.| +.
T Consensus 194 --------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~ 247 (267)
T PRK15080 194 --------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GL 247 (267)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CC
Confidence 357889999999999999999999863 5789999999999999999999999 78
Q ss_pred CCCCCCCcchhhhhhHHHhh
Q 010543 390 EPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 390 ~v~~~~~p~~ava~GAa~~a 409 (507)
++....+|++++|.|||+++
T Consensus 248 ~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccCCCchHHHHHHHHhhC
Confidence 88889999999999999864
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.93 E-value=3.3e-24 Score=216.06 Aligned_cols=195 Identities=23% Similarity=0.307 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHH
Q 010543 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (507)
Q Consensus 185 ~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (507)
....+.+.+|++.||+++..++.||.|+|++|.. .......++++|+|+||||+++++. +... ......+||++
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~-~~~~~~~~~vvDiG~gtt~i~i~~~--g~~~---~~~~i~~GG~~ 230 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLT-EDEKELGVCLIDIGGGTTDIAVYTG--GSIR---YTKVIPIGGNH 230 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcC-cchhcCCEEEEEeCCCcEEEEEEEC--CEEE---EEeeecchHHH
Confidence 3456778889999999999999999999998843 3334667999999999999999973 3322 13446899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC------cEEEEEEeeccCCcceEEeecHHHHHHHH
Q 010543 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELN 338 (507)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~e~~~ 338 (507)
+|+.+.+.+. . ...+||++|+.++.. .+..+.++... .+....+++++|++++
T Consensus 231 it~~i~~~l~----------~---------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii 289 (371)
T TIGR01174 231 ITKDIAKALR----------T---------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEII 289 (371)
T ss_pred HHHHHHHHhC----------C---------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHH
Confidence 9999877531 1 137899999999763 23455555432 3566889999999999
Q ss_pred HHHHHHHHHHHH-HHHHHcCCCcCCCCe-EEEEcCCCCCHHHHHHHHhhcCCCCCCC------------CCCcchhhhhh
Q 010543 339 NDLFRKTMGPVK-KAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAYG 404 (507)
Q Consensus 339 ~~~~~~i~~~i~-~~l~~~~~~~~~i~~-V~lvGG~s~~p~l~~~l~~~~~~~~v~~------------~~~p~~ava~G 404 (507)
++.++++.+.++ +.|++++.. .+++. |+|+||+|++|++++.+++.| +.++.. ..+|.+++|.|
T Consensus 290 ~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~G 367 (371)
T TIGR01174 290 EARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAVG 367 (371)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHHH
Confidence 999999999997 999998776 56776 999999999999999999999 443311 23788889999
Q ss_pred HHHh
Q 010543 405 AAVQ 408 (507)
Q Consensus 405 Aa~~ 408 (507)
.++|
T Consensus 368 l~~~ 371 (371)
T TIGR01174 368 LLLY 371 (371)
T ss_pred HHhC
Confidence 8764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.92 E-value=1.3e-23 Score=213.99 Aligned_cols=196 Identities=21% Similarity=0.268 Sum_probs=148.3
Q ss_pred HHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHH
Q 010543 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (507)
Q Consensus 188 r~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 267 (507)
.+.+.+|++.||+++..++.||.|+|.++. ....++..++++|+||||||+++++ ++.+. .....+.||+++++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l-~~~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~ 241 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVL-TEDERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhc-ChhhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHH
Confidence 344567999999999999999999999884 4344567899999999999999997 34322 33447899999999
Q ss_pred HHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC------cEEEEEEeeccCCcceEEeecHHHHHHHHHHH
Q 010543 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNNDL 341 (507)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~ 341 (507)
.|++.+. . + ...||++|+.+... .+..+.++...+. ....+++.++.+++++.
T Consensus 242 dIa~~l~--------i--~---------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r 300 (420)
T PRK09472 242 DIAYAFG--------T--P---------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIEPR 300 (420)
T ss_pred HHHHHhC--------c--C---------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHHHH
Confidence 9986641 1 1 27899999775432 2344555543222 23478999999999997
Q ss_pred HHHHHHHHHH-------HHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCC------------CCCcchhhh
Q 010543 342 FRKTMGPVKK-------AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVA 402 (507)
Q Consensus 342 ~~~i~~~i~~-------~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~------------~~~p~~ava 402 (507)
++++++.+.+ .+.+.++....++.|+|+||+|++|++++.+++.| +.++.. ..+|.+++|
T Consensus 301 ~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~ata 379 (420)
T PRK09472 301 YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYSTA 379 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHHHH
Confidence 7777777765 45566777677899999999999999999999999 343321 258999999
Q ss_pred hhHHHhhhh
Q 010543 403 YGAAVQGGI 411 (507)
Q Consensus 403 ~GAa~~a~~ 411 (507)
.|.++++..
T Consensus 380 ~Gl~~~~~~ 388 (420)
T PRK09472 380 VGLLHYGKE 388 (420)
T ss_pred HHHHHHhhh
Confidence 999999863
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.89 E-value=5.9e-21 Score=189.22 Aligned_cols=198 Identities=26% Similarity=0.410 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHH
Q 010543 187 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (507)
Q Consensus 187 qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 266 (507)
--+.+.+|++.+|+++..++.+|.|++.+. +..+.+...++++|+||||||+++++- +.+. +.+..++||++++
T Consensus 166 ~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~-L~~dEkelGv~lIDiG~GTTdIai~~~--G~l~---~~~~ipvgG~~vT 239 (418)
T COG0849 166 ILENLEKCVERAGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYKN--GALR---YTGVIPVGGDHVT 239 (418)
T ss_pred HHHHHHHHHHHhCCCeeeEEEehhhhhhhc-cCcccHhcCeEEEEeCCCcEEEEEEEC--CEEE---EEeeEeeCccHHH
Confidence 367788999999999999999999999977 666668889999999999999999984 3322 3455789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCc------EEEEEEeeccCCcceEEeecHHHHHHHHHH
Q 010543 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEELNND 340 (507)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~------~~~~~i~~~~~~~~~~~~itr~~~e~~~~~ 340 (507)
..|+.-|.-.+ ..||+.|....... +..+.++...+ +...++++.++.+++++
T Consensus 240 ~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~--~~~~~~t~~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGS--DIPRQVTRSELSEIIEA 298 (418)
T ss_pred HHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCC--cccchhhHHHHHHHHHh
Confidence 99998743211 78899998875432 33455554433 33678999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCC--C----------CCCcchhhhhhHHHh
Q 010543 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN--K----------GVNPDEAVAYGAAVQ 408 (507)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~--~----------~~~p~~ava~GAa~~ 408 (507)
.+.+++.++++.|++.+....-...|+|+||++++|++.+..++.|. .++. . ..+|..+.|.|...+
T Consensus 299 R~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~ 377 (418)
T COG0849 299 RVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLY 377 (418)
T ss_pred hHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHH
Confidence 99999999999999999876677899999999999999999999993 3321 1 246899999999999
Q ss_pred hhhh
Q 010543 409 GGIL 412 (507)
Q Consensus 409 a~~~ 412 (507)
+...
T Consensus 378 ~~~~ 381 (418)
T COG0849 378 GALM 381 (418)
T ss_pred Hhhc
Confidence 8753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.75 E-value=3.7e-17 Score=165.18 Aligned_cols=302 Identities=18% Similarity=0.165 Sum_probs=190.9
Q ss_pred EEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecC----------CcEEEcHhHHhhhhhCCChhHHHhHHhcCC
Q 010543 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD----------SERLIGEAAKNQAAVNPDRTIFDVKRLIGR 108 (507)
Q Consensus 39 iGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~llg~ 108 (507)
|.||+||.++++++..++.+..+ +||+++... ....+|++|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~--------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL--------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC---------------
Confidence 78999999999999877644332 377776542 246677776432100
Q ss_pred CCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 010543 109 KFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQR 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr 188 (507)
+ ..-..|+ .+| .+..-+....+++++.+.... .......+++++|..++..+|
T Consensus 59 ---~-----~~~~~P~---------------~~G---~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 59 ---G-----LELIYPI---------------EHG---IVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred ---c-----eEEcccc---------------cCC---EEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 0 0001111 122 122334555666666653211 122346899999999998888
Q ss_pred HHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHH
Q 010543 189 QATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (507)
Q Consensus 189 ~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 267 (507)
+.+.+ +++..|++.+.++++|.+|+++++. .+.+|+|+|+++|+++.+. ++.. +........+||+++|+
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG~~l~~ 182 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAGRDLTR 182 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEE--CCEE-chhhheeccccHHHHHH
Confidence 88876 5677999999999999999998853 5779999999999998877 3332 12223446899999999
Q ss_pred HHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcE--------------EEEEEeeccCCcceEEeecHHH
Q 010543 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ--------------VRVEIESLFDGIDFSEPLTRAR 333 (507)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~--------------~~~~i~~~~~~~~~~~~itr~~ 333 (507)
.|.+++..+.. ..+.. .-...++.+|+.+..... .......+.++. .+.++.+.
T Consensus 183 ~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er 250 (371)
T cd00012 183 YLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNER 250 (371)
T ss_pred HHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHH
Confidence 99998754321 00111 112446666666532110 000001122222 34455554
Q ss_pred H---HHHHHHH-----HHHHHHHHHHHHHHcCC--CcCCCCeEEEEcCCCCCHHHHHHHHhhcC----C-----CCCCCC
Q 010543 334 F---EELNNDL-----FRKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFD----G-----KEPNKG 394 (507)
Q Consensus 334 ~---e~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~V~lvGG~s~~p~l~~~l~~~~~----~-----~~v~~~ 394 (507)
| |.+++|. ...+.+.|.+.++.+.. ...-.++|+|+||+|++|++.++|.+.+. . ..+...
T Consensus 251 ~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~ 330 (371)
T cd00012 251 FRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAP 330 (371)
T ss_pred hhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccC
Confidence 4 3344442 34778888888887642 23446889999999999999999988773 1 123455
Q ss_pred CCcchhhhhhHHHhhhh
Q 010543 395 VNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 395 ~~p~~ava~GAa~~a~~ 411 (507)
.+|..++-+||.++|..
T Consensus 331 ~~~~~~aw~G~si~as~ 347 (371)
T cd00012 331 PERKYSVWLGGSILASL 347 (371)
T ss_pred CCccccEEeCchhhcCc
Confidence 68899999999998854
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.71 E-value=1.9e-16 Score=160.16 Aligned_cols=302 Identities=18% Similarity=0.188 Sum_probs=186.2
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC---------cEEEcHhHHhhhhhCCChhHHHhHHhcC
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---------ERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~llg 107 (507)
..|+||+||.++++.+..+..|.++ +||+++...+ ...+|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 3699999999999999876655443 4888876533 245677663211 0
Q ss_pred CCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHH
Q 010543 108 RKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (507)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~q 187 (507)
.. .-.+|+. +| .+..-+....+++++....-. ....-..+++|.|...+..+
T Consensus 59 ~~---------~~~~P~~---------------~G---~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 59 GL---------ELKYPIE---------------HG---IVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred Cc---------eecCCCc---------------CC---EEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 00 0011111 22 233456666777777653211 12233579999999888999
Q ss_pred HHHHHHHH-HHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHH
Q 010543 188 RQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (507)
Q Consensus 188 r~~l~~aa-~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 266 (507)
|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. ++.. +........+||+++|
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHH
Confidence 99998865 5779999999999999999885 45779999999999999887 3332 2222233589999999
Q ss_pred HHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCc-----------------EEEEEEeeccCCcceEEee
Q 010543 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-----------------QVRVEIESLFDGIDFSEPL 329 (507)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~-----------------~~~~~i~~~~~~~~~~~~i 329 (507)
+.|.+++...-. ++ ... .-...++.+|+.+.... ..... -.+.++..+. +
T Consensus 182 ~~l~~~l~~~~~-~~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~lpdg~~~~--~ 248 (373)
T smart00268 182 DYLKELLSERGY-QF--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKT-YELPDGNTIK--V 248 (373)
T ss_pred HHHHHHHHhcCC-CC--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhccccccccee-EECCCCCEEE--E
Confidence 999988754100 11 111 11234555555442110 00000 1123343333 3
Q ss_pred cHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCHHHHHHHHhhcCC-------CCCC
Q 010543 330 TRARF---EELNNDL-----FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPN 392 (507)
Q Consensus 330 tr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~~~-------~~v~ 392 (507)
..+.| |.+++|. ...+.+.|.++++++... ..-.++|+|+||+|++|++.++|.+.+.. .++.
T Consensus 249 ~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~ 328 (373)
T smart00268 249 GNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVI 328 (373)
T ss_pred ChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEe
Confidence 33333 3344432 246778888888775322 23356799999999999999999887721 1233
Q ss_pred CCCCcchhhhhhHHHhhhh
Q 010543 393 KGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 393 ~~~~p~~ava~GAa~~a~~ 411 (507)
...++..++=.||+++|..
T Consensus 329 ~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 329 APPERKYSVWLGGSILASL 347 (373)
T ss_pred cCCCCccceEeCcccccCc
Confidence 4456667788888877743
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=137.94 Aligned_cols=197 Identities=27% Similarity=0.386 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCC
Q 010543 155 MILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGG 234 (507)
Q Consensus 155 ~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gg 234 (507)
.+.+++++.+++.++.++.+..-++|..-.....+...+..+.||+++..+++||+|||.-..+... .|+|+||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiGG 149 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeCC
Confidence 5677889999999999888888889988766667777788889999999999999999977655433 6999999
Q ss_pred cceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEE
Q 010543 235 GTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRV 314 (507)
Q Consensus 235 gt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~ 314 (507)
|||-+++++-.+.. +..+...||.+++-.|+-. |++++ +++|..|+.-...
T Consensus 150 GTTGIsi~kkGkVi-----y~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~----- 200 (277)
T COG4820 150 GTTGISIVKKGKVI-----YSADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG----- 200 (277)
T ss_pred CcceeEEEEcCcEE-----EeccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-----
Confidence 99999999955444 3556788998887766544 45444 6677777643221
Q ss_pred EEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCC
Q 010543 315 EIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG 394 (507)
Q Consensus 315 ~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~ 394 (507)
+|.-..++|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+..++.| +.++..+
T Consensus 201 -----------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P 257 (277)
T COG4820 201 -----------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLP 257 (277)
T ss_pred -----------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccC
Confidence 12223457888888888888887744 667999999999999999999999 7899999
Q ss_pred CCcchhhhhhHHHhh
Q 010543 395 VNPDEAVAYGAAVQG 409 (507)
Q Consensus 395 ~~p~~ava~GAa~~a 409 (507)
..|.+..-.|.|..+
T Consensus 258 ~~p~y~TPLgIA~sg 272 (277)
T COG4820 258 QHPLYMTPLGIASSG 272 (277)
T ss_pred CCcceechhhhhhcc
Confidence 888877777776543
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.66 E-value=2.7e-14 Score=141.53 Aligned_cols=208 Identities=17% Similarity=0.217 Sum_probs=136.2
Q ss_pred CcCcEE--EEeCCCCCHHH-HHHHHHHHHHc------------CCceeEeechhhHHHHHhhcccC-------CCceeEE
Q 010543 171 KIKDAV--VTVPAYFNDAQ-RQATKDAGIIA------------GLNVARIINEPTAAAIAYGLDKK-------GGEKNIL 228 (507)
Q Consensus 171 ~~~~~v--iTVP~~~~~~q-r~~l~~aa~~a------------gl~~~~li~Ep~Aaa~~~~~~~~-------~~~~~~l 228 (507)
++..++ ...|..+...+ ++.+++..... .+..+.+++||.+|.+.+..... .....++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 58998875444 46676654321 12335679999999887755422 1445789
Q ss_pred EEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhcc
Q 010543 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (507)
Q Consensus 229 v~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 308 (507)
|+|+|+||||+++++ ++.+ +....+....|..++.+.+.+.+..+ .++..+.. ..++++- ..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~~---------~~ie~~l---~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKK---EEGASITP---------YMLEKGL---EY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhh---CCCCCCCH---------HHHHHHH---Hc
Confidence 999999999999986 3333 22334447789999999988886422 23333321 2222221 11
Q ss_pred CcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCC
Q 010543 309 QHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG 388 (507)
Q Consensus 309 ~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~ 388 (507)
. .+.+ ..+... .+ ++++.++++++++++.+.+...+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~---~~~~~i--d~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKL---NQKTVI--DF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEe---CCCceE--eh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 1111 111111 12 3556778888888888888877753 3468999999999986 89999999974
Q ss_pred CCCCCCCCcchhhhhhHHHhhhhhc
Q 010543 389 KEPNKGVNPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 389 ~~v~~~~~p~~ava~GAa~~a~~~~ 413 (507)
+....||+.|.|+|...+|..+.
T Consensus 316 --~~~~~~p~~ANa~G~~~~g~~~~ 338 (344)
T PRK13917 316 --VEKADESQFANVRGYYKYGELLK 338 (344)
T ss_pred --eEEcCChHHHHHHHHHHHHHHHh
Confidence 35668999999999999987553
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.65 E-value=2.2e-14 Score=146.59 Aligned_cols=225 Identities=17% Similarity=0.124 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeEeechhhHHHHHhhcccCC----C
Q 010543 149 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKG----G 223 (507)
Q Consensus 149 ~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa-~~agl~~~~li~Ep~Aaa~~~~~~~~~----~ 223 (507)
.-+....+++++....- ........+++|.|..++..+|+.+.+.+ +..+++.+.+..+|.++++++...... .
T Consensus 80 dwd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred CHHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 34555566666543211 11223356899999999999999997754 556999999999999999886332211 2
Q ss_pred ceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Q 010543 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAK 303 (507)
Q Consensus 224 ~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 303 (507)
..+-+|+|+|.++|+++.+. ++.. +........+||+++|+.|.+++.++ +..+... .....++.+|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~--~G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVV--DGYV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEE--CCEE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHH
Confidence 34569999999999998776 3332 11122235899999999999987532 1112111 1123456666
Q ss_pred HHhccCc-----------------EEEEEEeeccCCcceEEeecHHHH---HHHHHHHH------HHHHHHHHHHHHHcC
Q 010543 304 RALSSQH-----------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF------RKTMGPVKKAMEDAG 357 (507)
Q Consensus 304 ~~ls~~~-----------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~ 357 (507)
+.++-.. ...+..++..++....+.|..+.| |-+++|-+ ..+.+.|.+.+.++.
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 6553210 011222222234445677887777 34565632 256788888888764
Q ss_pred CC--cCCCCeEEEEcCCCCCHHHHHHHHhhcC
Q 010543 358 LE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 358 ~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~~ 387 (507)
.+ ..-.++|+|+||+|.+|++.++|++.+.
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 33 3446789999999999999999998773
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.56 E-value=5.1e-13 Score=131.70 Aligned_cols=206 Identities=20% Similarity=0.219 Sum_probs=128.8
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeEeechhhHHHHHhhcccC---CCceeEEEEEcCCcceE
Q 010543 171 KIKDAVVTVPAYFNDAQRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEKNILVFDLGGGTFD 238 (507)
Q Consensus 171 ~~~~~viTVP~~~~~~qr~~l~~aa~~a---------gl~~~~li~Ep~Aaa~~~~~~~~---~~~~~~lv~D~Gggt~d 238 (507)
.+..+|+..|..+...+++.+++..... -+..+.+++||.+|.+.+..... .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4557999999999988999998876532 23456789999999887754321 15567899999999999
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEee
Q 010543 239 VSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIES 318 (507)
Q Consensus 239 vsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~ 318 (507)
+.+++ +..+ +....++...|..++-+.+.+.+.+ +++.+...+.. ..+++ |.......+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~----~~g~~~~~~~~-------~i~~~---l~~g~~~~~---- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISK----DIGTPAYRDID-------RIDLA---LRTGKQPRI---- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHh----hcCCCCccCHH-------HHHHH---HHhCCceee----
Confidence 98774 4433 3344555678888888887777554 44543111111 11211 111000000
Q ss_pred ccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcc
Q 010543 319 LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPD 398 (507)
Q Consensus 319 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~ 398 (507)
.+.. +.|+ +.-+..+..+++++..+.+.+. ...+++.|+|+||++. .+++.|++.||..++....||+
T Consensus 240 --~gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKP--VDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --ccee--cCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 1111 1122 1111223333344333333331 1245889999999987 6889999999876666678999
Q ss_pred hhhhhhHHHhh
Q 010543 399 EAVAYGAAVQG 409 (507)
Q Consensus 399 ~ava~GAa~~a 409 (507)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999987765
No 39
>PTZ00281 actin; Provisional
Probab=99.55 E-value=2.1e-13 Score=137.40 Aligned_cols=239 Identities=15% Similarity=0.127 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeE
Q 010543 149 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNI 227 (507)
Q Consensus 149 ~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~ 227 (507)
.-+....+++++.... -........+++|-|..++..+|+.+.+ +.+..+++.+.+..+|.+++++++. .+-
T Consensus 79 dwd~~e~l~~~~f~~~-l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tg 151 (376)
T PTZ00281 79 NWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTG 151 (376)
T ss_pred CHHHHHHHHHHHHHhh-ccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceE
Confidence 3444555666655321 1122334578899999999999999977 6677899999999999999988753 466
Q ss_pred EEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhc
Q 010543 228 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS 307 (507)
Q Consensus 228 lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls 307 (507)
+|+|+|.+.+.++-+.-... +........+||.++++.|.+.|..+ +...... . =...++.+|+.++
T Consensus 152 lVVDiG~~~t~v~PV~dG~~---~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-~----~~~~~~~iKe~~c 218 (376)
T PTZ00281 152 IVMDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTTT-A----EREIVRDIKEKLA 218 (376)
T ss_pred EEEECCCceEEEEEEEeccc---chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCcH-H----HHHHHHHHHHhcE
Confidence 99999999999876653221 11222335799999999999886532 1111110 0 0134566666653
Q ss_pred cCc--------------EEEEEEeeccCCcceEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCC
Q 010543 308 SQH--------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQI 363 (507)
Q Consensus 308 ~~~--------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i 363 (507)
-.. ..... -.+.++. .+++..+.| |-+++|.+ ..+.+.|.+.+.++... +.-.
T Consensus 219 ~v~~d~~~~~~~~~~~~~~~~~-y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~ 295 (376)
T PTZ00281 219 YVALDFEAEMQTAASSSALEKS-YELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY 295 (376)
T ss_pred EecCCchHHHHhhhcCccccee-EECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHH
Confidence 211 00001 1123343 344555554 44555532 25677777777775432 2345
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcC----C---CCCCCCCCcchhhhhhHHHhhh
Q 010543 364 DEIVLVGGSTRIPKVQQLLKDYFD----G---KEPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 364 ~~V~lvGG~s~~p~l~~~l~~~~~----~---~~v~~~~~p~~ava~GAa~~a~ 410 (507)
+.|+|+||+|.+|++.++|++.+. . .++..+.++..++=+||.++|.
T Consensus 296 ~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 296 GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred hhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 789999999999999999988762 1 1234445667788889888875
No 40
>PTZ00004 actin-2; Provisional
Probab=99.54 E-value=2.9e-13 Score=136.63 Aligned_cols=303 Identities=15% Similarity=0.152 Sum_probs=184.4
Q ss_pred ccCCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC----------cEEEcHhHHhhhhhCCChhHHHh
Q 010543 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDV 102 (507)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~ 102 (507)
-+....|.||+|+.++++.++.++.|..+ +||++....+ ..++|+++.... . .
T Consensus 3 ~~~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~---~---~--- 65 (378)
T PTZ00004 3 VEETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR---G---I--- 65 (378)
T ss_pred CCCCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc---c---c---
Confidence 34556799999999999999876655433 4777765322 244555442210 0 0
Q ss_pred HHhcCCCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCC
Q 010543 103 KRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAY 182 (507)
Q Consensus 103 k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~ 182 (507)
+ . -..|+ .+| .+..-+....+++++...- -........+++|-|..
T Consensus 66 ---~-----------~-l~~Pi---------------~~G---~i~d~d~~e~i~~~~~~~~-l~v~~~~~pvllte~~~ 111 (378)
T PTZ00004 66 ---L-----------T-LKYPI---------------EHG---IVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPL 111 (378)
T ss_pred ---c-----------e-EcccC---------------cCC---EEcCHHHHHHHHHHHHHhh-cccCCccCcceeecCCC
Confidence 0 0 00111 122 2233445556666643211 01123345788999999
Q ss_pred CCHHHHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCc
Q 010543 183 FNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG 261 (507)
Q Consensus 183 ~~~~qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~G 261 (507)
++..+|+.+.+ ..+..+++.+.+..+|.+++++++. .+-+|+|+|.+.|+++.+. ++.. +.......++|
T Consensus 112 ~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~G 182 (378)
T PTZ00004 112 NPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVA 182 (378)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEE--CCEE-eecceeeeccc
Confidence 99999988866 5567899999999999999988753 4569999999999988776 3332 22223335899
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC---------------c--EEEEEEeeccCCcc
Q 010543 262 GEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ---------------H--QVRVEIESLFDGID 324 (507)
Q Consensus 262 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~---------------~--~~~~~i~~~~~~~~ 324 (507)
|.++|+.|.+.+.++ +..+.... -...++.+|+.+... . ...+. +.+|..
T Consensus 183 G~~lt~~L~~lL~~~-----~~~~~~~~-----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~~ 249 (378)
T PTZ00004 183 GRDLTEYMMKILHER-----GTTFTTTA-----EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGTI 249 (378)
T ss_pred HHHHHHHHHHHHHhc-----CCCCCcHH-----HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CCCCCE
Confidence 999999999986432 11111110 112345555554211 0 11111 234433
Q ss_pred eEEeecHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCHHHHHHHHhhcCC-----
Q 010543 325 FSEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG----- 388 (507)
Q Consensus 325 ~~~~itr~~~---e~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~~~----- 388 (507)
+.+..+.| |-+++|- ...+.++|.+++.++..+ +.-.++|+|+||+|.+|++.++|...+..
T Consensus 250 --i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~ 327 (378)
T PTZ00004 250 --ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPST 327 (378)
T ss_pred --EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCC
Confidence 34555554 3456653 235677888888776432 33457899999999999999999887621
Q ss_pred --CCCCCCCCcchhhhhhHHHhhh
Q 010543 389 --KEPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 389 --~~v~~~~~p~~ava~GAa~~a~ 410 (507)
.++....++..++=+||+++|.
T Consensus 328 ~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 328 MKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred ccEEEecCCCCceeEEECcccccC
Confidence 1233445667777788888775
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.53 E-value=2.6e-12 Score=128.80 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhhHHHHHhh-----cccCCCce-eEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCC
Q 010543 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEK-NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDT 258 (507)
Q Consensus 185 ~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~-----~~~~~~~~-~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~ 258 (507)
....+.+.++++.||++...+..+|.|.+-.+. +....... .++++|+|++++++++++-+... .....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~-----~~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML-----FTREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE-----EEEEe
Confidence 566788889999999999999999999876663 22222334 49999999999999999743322 24446
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHH
Q 010543 259 HLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELN 338 (507)
Q Consensus 259 ~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~ 338 (507)
.+||.++++.+.+.+ +.+. ..||+.|........ .-.+.+
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~~-----------~~Ae~~k~~~~~~~~---------------------~~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLNP-----------EEAGEAKQQGGLPLL---------------------YDPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCCH-----------HHHHHHHhcCCCCCc---------------------hhHHHH
Confidence 899999999887542 2221 678888774321110 013456
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCC-------------------CCCc
Q 010543 339 NDLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK-------------------GVNP 397 (507)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~-------------------~~~p 397 (507)
++.++++...|.+.++-. ......++.|+|+||+++++++.+.+++.+ +.++.. ...|
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhhH
Confidence 677777777777777532 223345899999999999999999999998 443311 1345
Q ss_pred chhhhhhHHHhh
Q 010543 398 DEAVAYGAAVQG 409 (507)
Q Consensus 398 ~~ava~GAa~~a 409 (507)
..++|.|+|+++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 677888888764
No 42
>PTZ00452 actin; Provisional
Probab=99.52 E-value=5.5e-13 Score=134.08 Aligned_cols=300 Identities=17% Similarity=0.172 Sum_probs=182.8
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC----------cEEEcHhHHhhhhhCCChhHHHhHHh
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKRL 105 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k~l 105 (507)
...|-||+|+.+++++++.+..|.++ +||+|..... ..++|++|.... .
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~--~----------- 63 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR--G----------- 63 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc--c-----------
Confidence 34789999999999999977766544 3777665322 234555442110 0
Q ss_pred cCCCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCH
Q 010543 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND 185 (507)
Q Consensus 106 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~ 185 (507)
.+.+ .-.+++|. +..-+....+++++....- ........+++|-|...+.
T Consensus 64 -----------------~~~l---------~~Pi~~G~---I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~ 113 (375)
T PTZ00452 64 -----------------VLAI---------KEPIQNGI---INSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSK 113 (375)
T ss_pred -----------------CcEE---------cccCcCCE---EcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCH
Confidence 0000 00111332 2333444456666543211 1233346789999999999
Q ss_pred HHHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHH
Q 010543 186 AQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (507)
Q Consensus 186 ~qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (507)
.+|+.+.+ ..+..+++.+.+.+.|.+++++++. .+-+|+|+|.+.++++-+. +|.. +........+||.+
T Consensus 114 ~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~gG~~ 184 (375)
T PTZ00452 114 FNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVF--EGHQ-IPQAITKINLAGRL 184 (375)
T ss_pred HHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEE--CCEE-eccceEEeeccchH
Confidence 99999977 4566788999999999999988753 4569999999999988766 3322 11222335799999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCc----------------EEEEEEeeccCCcceEEe
Q 010543 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVEIESLFDGIDFSEP 328 (507)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~----------------~~~~~i~~~~~~~~~~~~ 328 (507)
+++.|.+.|.++ +........ ...++.+|+.++-.. ..... +.+|. .++
T Consensus 185 lt~~L~~lL~~~-----~~~~~~~~~-----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~ 249 (375)
T PTZ00452 185 CTDYLTQILQEL-----GYSLTEPHQ-----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILT 249 (375)
T ss_pred HHHHHHHHHHhc-----CCCCCCHHH-----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEE
Confidence 999999886432 212211100 123444555543110 01121 33443 344
Q ss_pred ecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCHHHHHHHHhhcCC-----C--CC
Q 010543 329 LTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-----K--EP 391 (507)
Q Consensus 329 itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~~~-----~--~v 391 (507)
+..+.| |-+++|.+ ..+.+++.+.+.++... ..-.++|+|+||+|.+|++.++|.+.+.. . ++
T Consensus 250 l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v 329 (375)
T PTZ00452 250 IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQV 329 (375)
T ss_pred eehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEE
Confidence 566665 34555543 35677777888776432 34567999999999999999999887621 1 23
Q ss_pred CCCCCcchhhhhhHHHhhh
Q 010543 392 NKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 392 ~~~~~p~~ava~GAa~~a~ 410 (507)
..+.++..++=.|+.++|.
T Consensus 330 ~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 330 AAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred ecCCCcceeEEECchhhcC
Confidence 3444566777788888775
No 43
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.52 E-value=2e-13 Score=139.22 Aligned_cols=313 Identities=18% Similarity=0.202 Sum_probs=182.7
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC-----cEEEcHhHHhhhhhCCChhHHHhHHhcCCC
Q 010543 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----ERLIGEAAKNQAAVNPDRTIFDVKRLIGRK 109 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~ 109 (507)
...+|-||+|+.+++++++.+..|..+ +||++..... ...+|.++.... +.
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~~---~~------------- 58 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSPR---SN------------- 58 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHTG---TG-------------
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccch---hh-------------
Confidence 346899999999999999866655433 4887776433 356777632210 00
Q ss_pred CCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHH
Q 010543 110 FEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQ 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~ 189 (507)
. .+.-.+.+| .+...+....+++++.... -........++++.|..++..+|+
T Consensus 59 --------------~---------~~~~p~~~g---~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 59 --------------L---------ELRSPIENG---VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp --------------E---------EEEESEETT---EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHH
T ss_pred --------------e---------eeeeecccc---ccccccccccccccccccc-cccccccceeeeeccccCCchhhh
Confidence 0 000001122 2233455566666666543 112234457999999999999999
Q ss_pred HHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHH
Q 010543 190 ATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (507)
Q Consensus 190 ~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~ 268 (507)
.+.+ +.+..+++.+.++++|.+|+++++.. +-+|+|+|.+.|.++.+. ++.. +........+||+++++.
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~ 182 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEY 182 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHH
T ss_pred hhhhhhhcccccceeeeeecccccccccccc------cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHH
Confidence 8877 45577999999999999999988643 559999999999988775 4432 111122357999999999
Q ss_pred HHHHHHHH-HH--hhcCCCCc----cCHHHHHHHHHHHHHHHHHhc---------------cCcEEEEEEeeccCCcceE
Q 010543 269 VMEYFIKL-IK--KKHGKDIS----KDKRAIGKLRREAERAKRALS---------------SQHQVRVEIESLFDGIDFS 326 (507)
Q Consensus 269 l~~~l~~~-~~--~~~~~~~~----~~~~~~~~L~~~~e~~K~~ls---------------~~~~~~~~i~~~~~~~~~~ 326 (507)
|.+++.++ +. ..+..... ........-....+.+|+.+. ......+.+ .++. .
T Consensus 183 l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~--~ 257 (393)
T PF00022_consen 183 LKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ--T 257 (393)
T ss_dssp HHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--E
T ss_pred HHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc--c
Confidence 99998763 11 00100000 000001111233334443321 112223322 3444 4
Q ss_pred EeecHHHH---HHHHHHHH------------HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCHHHHHHHHhhcCC-
Q 010543 327 EPLTRARF---EELNNDLF------------RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG- 388 (507)
Q Consensus 327 ~~itr~~~---e~~~~~~~------------~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~~~- 388 (507)
+.+..+.| |-++.|.. ..+.++|.+++.++... ..-.+.|+|+||+|.+|++.++|.+.+..
T Consensus 258 i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~ 337 (393)
T PF00022_consen 258 IILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSL 337 (393)
T ss_dssp EEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhh
Confidence 44554444 22333322 15778888888876433 22247899999999999999999887622
Q ss_pred ------CCCCCCC-CcchhhhhhHHHhhhhh
Q 010543 389 ------KEPNKGV-NPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 389 ------~~v~~~~-~p~~ava~GAa~~a~~~ 412 (507)
.++.... ++..++=.||+++|..-
T Consensus 338 ~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 338 LPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp SGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhccccceeccCchhhhhcccccceeeeccc
Confidence 2344444 88999999999998643
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.47 E-value=5.7e-12 Score=126.83 Aligned_cols=300 Identities=16% Similarity=0.150 Sum_probs=182.5
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEecCC----------cEEEcHhHHhhhhhCCChhHHHhHHhc
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKRLI 106 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k~ll 106 (507)
..|-||+|+.+++++++.+..|.++ +||++..... ..++|++|.... . .+
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~--~----------~~ 72 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR--G----------LL 72 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC--c----------Cc
Confidence 4688999999999999976666543 3776655322 234555543210 0 00
Q ss_pred CCCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHH
Q 010543 107 GRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDA 186 (507)
Q Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~ 186 (507)
. -.+|+ .+| .+..-+....+++++.+..+ ....-..+++|-|..++..
T Consensus 73 ~------------l~~Pi---------------~~G---~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~ 120 (380)
T PTZ00466 73 K------------VTYPI---------------NHG---IIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQK 120 (380)
T ss_pred e------------eCccc---------------cCC---eECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHH
Confidence 0 00111 133 23344455556666553221 2233457889999999999
Q ss_pred HHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHH
Q 010543 187 QRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (507)
Q Consensus 187 qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~i 265 (507)
+|+.+.+ ..+..+++.+.+.++|.+++++++. .+-+|+|+|.+.|.++-+. ++.. +........+||.++
T Consensus 121 ~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tglVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~l 191 (380)
T PTZ00466 121 NKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNGTVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDI 191 (380)
T ss_pred HHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceEEEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHH
Confidence 9999866 5566889999999999999988753 4669999999999987665 3322 222223358999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC-------------cEEEEEEeeccCCcceEEeecHH
Q 010543 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-------------HQVRVEIESLFDGIDFSEPLTRA 332 (507)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~-------------~~~~~~i~~~~~~~~~~~~itr~ 332 (507)
++.|.+.+.+. +...... .-...++.+|+.+.-. ....... .+.+|. .+.+..+
T Consensus 192 t~~L~~lL~~~-----~~~~~~~-----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y-~LPdg~--~i~l~~e 258 (380)
T PTZ00466 192 TTYLGYLLRKN-----GHLFNTS-----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY-ILPDGS--QILIGSE 258 (380)
T ss_pred HHHHHHHHHhc-----CCCCCcH-----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeE-ECCCCc--EEEEchH
Confidence 99999886431 1111110 1123345555554311 0000111 123343 3445666
Q ss_pred HH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCHHHHHHHHhhcCC-------CCCCCCC
Q 010543 333 RF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGV 395 (507)
Q Consensus 333 ~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~~~-------~~v~~~~ 395 (507)
.| |-+++|-+ ..+.++|.+.+.++..+ +.-..+|+|+||+|.+|++.++|++.+.. .++....
T Consensus 259 r~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~ 338 (380)
T PTZ00466 259 RYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPP 338 (380)
T ss_pred HhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCC
Confidence 65 44555532 25667777777776433 34467899999999999999999887721 1234445
Q ss_pred CcchhhhhhHHHhhh
Q 010543 396 NPDEAVAYGAAVQGG 410 (507)
Q Consensus 396 ~p~~ava~GAa~~a~ 410 (507)
++..++=+||+++|.
T Consensus 339 ~r~~~aW~GgSilas 353 (380)
T PTZ00466 339 ERKFSTFIGGSILAS 353 (380)
T ss_pred CCceeEEECchhhcC
Confidence 666777788888775
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.42 E-value=5e-12 Score=125.92 Aligned_cols=179 Identities=20% Similarity=0.263 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcc----c-CCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCC
Q 010543 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLD----K-KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 259 (507)
Q Consensus 185 ~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~----~-~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~ 259 (507)
....+...++++.||+++..+--+|.|.+-.+... . ......++++|+|+.++.+.++. ++.... .....
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEe
Confidence 45567778899999999988877777765544331 1 11346799999999999999988 444322 33368
Q ss_pred CchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHH
Q 010543 260 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 339 (507)
Q Consensus 260 ~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~ 339 (507)
+||.++++.+++.+.-.+ .++|+.|..-+.. .+...+.++
T Consensus 210 ~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~---------------------~~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIARELGIDF-------------------EEAEELKRSGGLP---------------------EEYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCC---------------------cchHHHHHH
Confidence 999999999998732111 6667777642110 023356667
Q ss_pred HHHHHHHHHHHHHHHH--cCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCC---------CCC----------Ccc
Q 010543 340 DLFRKTMGPVKKAMED--AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN---------KGV----------NPD 398 (507)
Q Consensus 340 ~~~~~i~~~i~~~l~~--~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~---------~~~----------~p~ 398 (507)
+.++++.+.|.+.++- .......|+.|+|+||++++++|.+.|++.+ +.++. ... .|.
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 7777777777777662 2234457999999999999999999999999 44321 111 256
Q ss_pred hhhhhhHHHhh
Q 010543 399 EAVAYGAAVQG 409 (507)
Q Consensus 399 ~ava~GAa~~a 409 (507)
.++|.|.|+++
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 78999999864
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.32 E-value=2e-11 Score=120.14 Aligned_cols=174 Identities=19% Similarity=0.305 Sum_probs=97.0
Q ss_pred ceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhh
Q 010543 201 NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKK 280 (507)
Q Consensus 201 ~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~ 280 (507)
..+.+++|+.||.+.+... ..+...++|+|+||+|+|+++++ ++.-.+....+...+|-..+.+.+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~-~~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~---- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD-LDEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA---- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT-S-TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT------
T ss_pred eeEEEEcccHHHHHHHHHh-hcccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh----
Confidence 4567899999999987555 22456789999999999999886 2222222334456789998888888875431
Q ss_pred cCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 010543 281 HGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360 (507)
Q Consensus 281 ~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~ 360 (507)
+...+ ......+.... +-+..+.. ..... =..+++.+.++..++++.+.|.+.+. ..
T Consensus 214 -~~~~s--~~~~~~ii~~~-~~~~~~~~----------~i~~~-----~~~~~v~~~i~~~~~~l~~~i~~~~~----~~ 270 (318)
T PF06406_consen 214 -GIDTS--ELQIDDIIRNR-KDKGYLRQ----------VINDE-----DVIDDVSEVIEEAVEELINRILRELG----DF 270 (318)
T ss_dssp -SBHHH--HHHHHHHHHTT-T-HHHHHH----------HSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHT----TS
T ss_pred -cCCCc--HHHHHHHHHhh-hccceecc----------cccch-----hhHHHHHHHHHHHHHHHHHHHHHHHh----hh
Confidence 10000 00001111000 00000000 00000 01233444444445554444444443 23
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhhcC--CCCCCCCCCcchhhhhhHH
Q 010543 361 NQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAA 406 (507)
Q Consensus 361 ~~i~~V~lvGG~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~GAa 406 (507)
.+++.|+++||++. .+.+.|++.|+ ..++....||+.|.|+|-+
T Consensus 271 ~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 271 SDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 45789999999975 69999999985 3467788899999999964
No 47
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.31 E-value=1.9e-10 Score=109.39 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=121.3
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEeCCCCCcccceEEEec----CC-----cEEEcHhHHhhhhhCCChhHHHhHHhcC
Q 010543 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT----DS-----ERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~----~~-----~~~~G~~A~~~~~~~~~~~~~~~k~llg 107 (507)
..|-||.|+-.+.+.|+..+-|..+ +||++... .+ +.+++..|...
T Consensus 12 ~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~----------------- 66 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV----------------- 66 (426)
T ss_pred ceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC-----------------
Confidence 5688999999999999877765544 48877641 11 23444443211
Q ss_pred CCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHH
Q 010543 108 RKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (507)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~q 187 (507)
+.+.-++...+ ++| .+..-|+..+..++.++.-- .....-..++||-|+.-+.++
T Consensus 67 -pr~gmEv~~~i--------------------~nG---lv~dWD~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~ 121 (426)
T KOG0679|consen 67 -PRPGMEVKTPI--------------------KNG---LVEDWDLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRAN 121 (426)
T ss_pred -CCCCCeeccch--------------------hcC---CcccHHHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHH
Confidence 11111111111 133 23345666777777764221 123344578999998777888
Q ss_pred HHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHH
Q 010543 188 RQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (507)
Q Consensus 188 r~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 266 (507)
|+.+.+ +.+...++...+..+|+|+|++.+ ..+-||+|+|++++.++-+. +|.+-..+... .++||+.+|
T Consensus 122 Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------rstalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~ 192 (426)
T KOG0679|consen 122 REKLTELMFEKLNVPAFYLAKTAVCTAFANG------RSTALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLN 192 (426)
T ss_pred HHHHHHHHHhhcCCceEEEechHHHHHHhcC------CCceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHH
Confidence 988877 567788899999999999999885 45669999999999998765 44433333333 689999999
Q ss_pred HHHHHHHHHH
Q 010543 267 QRVMEYFIKL 276 (507)
Q Consensus 267 ~~l~~~l~~~ 276 (507)
..+.+.|..+
T Consensus 193 ~~~~q~l~~~ 202 (426)
T KOG0679|consen 193 DQCRQLLEPK 202 (426)
T ss_pred HHHHHHHhhc
Confidence 9999998755
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=9.9e-09 Score=96.51 Aligned_cols=156 Identities=18% Similarity=0.239 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHHhhcc--c---CCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCC
Q 010543 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLD--K---KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 260 (507)
Q Consensus 186 ~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~--~---~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~ 260 (507)
+..+....|++.||++...+--|..|..-+|... + ...-..++|+|+|+..+.+.++.-....+ ..+..+
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~ 223 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPV 223 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccC
Confidence 3455567899999999988888888877666421 1 11223478999999999999998544443 555789
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHH
Q 010543 261 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 340 (507)
Q Consensus 261 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~ 340 (507)
||+.+++.+.+. ++.+. .+++.+|.....-. +.-.+...+
T Consensus 224 g~~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~ 263 (354)
T COG4972 224 GTDQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRP 263 (354)
T ss_pred cHHHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHH
Confidence 999999998776 23222 56677776543221 222456666
Q ss_pred HHHHHHHHHHHHHHHc--CCCcCCCCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 341 LFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 341 ~~~~i~~~i~~~l~~~--~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
+++++.+.|.+.|+-- .-...+|++|+|.||++.+.+|.+.+.+.+
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 6666666666666532 224467999999999999999999999998
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.14 E-value=2.3e-09 Score=108.68 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=76.1
Q ss_pred cCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEE
Q 010543 172 IKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFE 250 (507)
Q Consensus 172 ~~~~viTVP~~~~~~qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~ 250 (507)
-..+++|-|..+...+|+.+.+ +++...++...+..++.+++++.+... .+.+|+|+|.+.++++-+--.- .
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~DG~---~ 178 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVDGI---V 178 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeeccc---c
Confidence 4579999999999999988866 667788888888999999888775432 4779999999999998665321 2
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHHHH
Q 010543 251 VLSTNGDTHLGGEDFDQRVMEYFIKL 276 (507)
Q Consensus 251 v~~~~~~~~~GG~~id~~l~~~l~~~ 276 (507)
+........+||++++..|.+.|.+.
T Consensus 179 l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 179 LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccccceeeecCcHHHHHHHHHHHhhc
Confidence 22233346899999999999988764
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.04 E-value=1.5e-08 Score=96.18 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=108.3
Q ss_pred EeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCC
Q 010543 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (507)
Q Consensus 204 ~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~ 283 (507)
..++|.+|.+........ ... .|+|+||..+-+..++ ++...-.........|+..|.+.+++.+ +.
T Consensus 73 ~~~~ei~~~~~g~~~~~~--~~~-~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~~ 139 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--EAR-GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL--------GV 139 (248)
T ss_pred CceEEhhHHHHHHHHHCC--CCC-EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc--------CC
Confidence 357788776655433222 112 5999999999988887 5554444456656778888888877663 32
Q ss_pred CCccCHHHHHHHHHHHHHHHHHh----ccCcEEEEEEeec-cCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 010543 284 DISKDKRAIGKLRREAERAKRAL----SSQHQVRVEIESL-FDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL 358 (507)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~l----s~~~~~~~~i~~~-~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~ 358 (507)
++ ++++..+..- .-+..+.+..+.- .... ... ...+++++.+.+.+...+.+.+....
T Consensus 140 ~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l--~~g---~~~~di~~~~~~~va~~i~~~~~~~~- 202 (248)
T TIGR00241 140 SV-----------EELGSLAEKADRKAKISSMCTVFAESELISLL--AAG---VKKEDILAGVYESIAERVAEMLQRLK- 202 (248)
T ss_pred CH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHH--HCC---CCHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 22 3333333321 1112233322210 0000 001 12356777777777777777665532
Q ss_pred CcCCCC-eEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHh
Q 010543 359 EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (507)
Q Consensus 359 ~~~~i~-~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~ 408 (507)
++ .|+++||.++++++.+.+.+.+ +.++..+.+|+.+.|.|||+.
T Consensus 203 ----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 ----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 7999999999999999999999 788988999999999999973
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.01 E-value=1e-07 Score=90.47 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=96.7
Q ss_pred EeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCc-hHHHHHHHHHHHHHHHHhhcC
Q 010543 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG-GEDFDQRVMEYFIKLIKKKHG 282 (507)
Q Consensus 204 ~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~G-G~~id~~l~~~l~~~~~~~~~ 282 (507)
..++|-+|.|........ +..-.|+|+||-.+-+..+. .++.+.-.....-+.-| |+.++. .++. .+
T Consensus 106 ~~v~EItaha~Ga~~~~p--p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~-~A~~--------Lg 173 (293)
T TIGR03192 106 KAITEIACHARGANYMGG--NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEV-ISDL--------MQ 173 (293)
T ss_pred cceeeHHHHHHHHHHhcC--CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHH-HHHH--------cC
Confidence 458999988776533321 12236999999877765552 23433333333323333 344333 4333 23
Q ss_pred CCCccCHHHHHHHHHHHHHHH-HHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Q 010543 283 KDISKDKRAIGKLRREAERAK-RALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKN 361 (507)
Q Consensus 283 ~~~~~~~~~~~~L~~~~e~~K-~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~ 361 (507)
.++.+ |-+.+.+.+ +...-+..+.+..++-.-. -..--.++ ++++..+...+.+.+...+++.++.
T Consensus 174 i~lee-------l~~~a~~~~~~p~~Iss~CtVFAeSevi~-l~~~G~~~---edI~aGl~~sia~rv~~~~~~~~i~-- 240 (293)
T TIGR03192 174 IPIAD-------LGPRSFDVETEPEAVSSICVVFAKSEALG-LLKAGYTK---NMVIAAYCQAMAERVVSLLERIGVE-- 240 (293)
T ss_pred CCHHH-------HHHHHHhcCCCCCCcCCcceEeccHhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHhcccCCC--
Confidence 33211 111121211 1112222333332210000 00011233 3444445555555555555443322
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCCCCC-CCCCcchhhhhhHHHhhhh
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~-~~~~p~~ava~GAa~~a~~ 411 (507)
..|+|+||.++.+.+.+.+++.+ +.++. .+.+|+.+-|.|||++|..
T Consensus 241 --~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 --EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred --CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 35999999999999999999999 67766 5778999999999999864
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.83 E-value=8.7e-09 Score=102.71 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=58.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEE
Q 010543 173 KDAVVTVPAYFNDAQRQATKDAGII------------AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240 (507)
Q Consensus 173 ~~~viTVP~~~~~~qr~~l~~aa~~------------agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvs 240 (507)
.-.+||-++.. ++.++++++. ||++...++. |.|++.+.. .. ++...++++|+||||++++
T Consensus 89 ~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-se-Eke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 89 GAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-SE-ERNTRVLNIDIGGGTANYA 161 (475)
T ss_pred cEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-hh-hccCceEEEEeCCCceEEE
Confidence 34677887644 4455555554 5666555555 999888775 33 5788899999999999999
Q ss_pred EEEEeCCeEEEEEEcCCCCCchHHHHHH
Q 010543 241 ILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (507)
Q Consensus 241 v~~~~~~~~~v~~~~~~~~~GG~~id~~ 268 (507)
+|+-..-. ..+..++||+.++..
T Consensus 162 Vf~~G~l~-----~T~~l~vGG~~IT~D 184 (475)
T PRK10719 162 LFDAGKVI-----DTACLNVGGRLIETD 184 (475)
T ss_pred EEECCEEE-----EEEEEecccceEEEC
Confidence 99843322 344468888876544
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.82 E-value=4.4e-07 Score=89.55 Aligned_cols=180 Identities=19% Similarity=0.193 Sum_probs=97.4
Q ss_pred EeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCC
Q 010543 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (507)
Q Consensus 204 ~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~ 283 (507)
..++|-+|.+..........++.-.|+|+||--.- ++++.++...-....+.+.-|+-.|=+.+++.| +.
T Consensus 220 ~iv~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK--~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L--------gi 289 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLADKQEGPATVIDIGGMDNK--AISVWDGIPDNFTMGGICAGASGRFLEMTAKRL--------GV 289 (404)
T ss_pred ceEEEEhhHHHHHHHhcccCCCCcEEEEeCCCceE--EEEEcCCceeeEEEcCcccccCcHHHHHHHHHh--------CC
Confidence 34788888765443322212234589999996544 455556655444444434444433334444432 22
Q ss_pred CCccCHHHHHHHHHHHHHHH-HHhccCcEEEEEEeeccCCcc-eEEeecHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCc
Q 010543 284 DISKDKRAIGKLRREAERAK-RALSSQHQVRVEIESLFDGID-FSEPLTRARFEELNNDLFRKTMGPVKK-AMEDAGLEK 360 (507)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K-~~ls~~~~~~~~i~~~~~~~~-~~~~itr~~~e~~~~~~~~~i~~~i~~-~l~~~~~~~ 360 (507)
++. .|-+.+.+.+ +...-...+.+.-++ +-.. ...-.++ ++++..+...+.+.+.. ++++.+.
T Consensus 290 ~ie-------El~~lA~~~~~~pv~IsS~CtVFaeS--evIsll~~G~~~---eDIaAGl~~SIa~rv~~~l~~~~~i-- 355 (404)
T TIGR03286 290 DIT-------ELGKLALKGMPEKVRMNSYCIVFGIQ--DLVTALAEGASP---EDVAAAACHSVAEQVYEQQLQEIDV-- 355 (404)
T ss_pred CHH-------HHHHHHHhCCCCCCCccCcccccccH--hHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHhhcCCC--
Confidence 221 1222222221 111111122221110 0000 0001222 44455555555555543 3443322
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhh
Q 010543 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 361 ~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~ 410 (507)
-+.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+-|.|||++|.
T Consensus 356 --~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 --REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred --CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 235999999999999999999999 78899999999999999999884
No 54
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.75 E-value=2.5e-06 Score=79.98 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=94.6
Q ss_pred eechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCC
Q 010543 205 IINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKD 284 (507)
Q Consensus 205 li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~ 284 (507)
.++|-+|.|........ +.=.|+|+||--+-+..+. .++.+.-.....-+..|.-.|=+.+++.| +.+
T Consensus 80 ~vtEIt~ha~GA~~~~p---~~~tIiDIGGQD~K~I~~~-~~G~v~~f~MNdkCAAGTG~FLe~~A~~L--------~i~ 147 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP---EARAVLDIGALHGRAIRMD-ERGKVEAYKMTSQCASGSGQFLENIARYL--------GIA 147 (262)
T ss_pred CeeEEeHHHHHHHHHCC---CCCEEEEeCCCceEEEEEc-CCCcEeeEEecCcccccccHHHHHHHHHh--------CCC
Confidence 35677777665533221 2227999999888754442 24444333333333334333333333332 333
Q ss_pred CccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC
Q 010543 285 ISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQID 364 (507)
Q Consensus 285 ~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 364 (507)
+. .|-..+.++++...-+..+.+..++-.-. -..--.++ ++++..+.+.+.+.+...+++.+.. -+
T Consensus 148 le-------el~~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~---~~ 213 (262)
T TIGR02261 148 QD-------EIGSLSQQADNPEKVSGICAVLAETDVIN-MVSRGISA---PNILKGIHESMADRLAKLLKSLGAL---DG 213 (262)
T ss_pred HH-------HHHHHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC---CC
Confidence 21 12222333333322233344433210000 00011223 4455555555555555555553221 23
Q ss_pred eEEEEcCCCCCHHHHHHHHhhcCCCC----CCCCCCcchhhhhhHHHhh
Q 010543 365 EIVLVGGSTRIPKVQQLLKDYFDGKE----PNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 365 ~V~lvGG~s~~p~l~~~l~~~~~~~~----v~~~~~p~~ava~GAa~~a 409 (507)
.|+|+||.++.+++.+.+++.+++.+ +..+.+|+.+-|.|||+++
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999884332 5556789999999999874
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.73 E-value=1.3e-06 Score=84.07 Aligned_cols=180 Identities=22% Similarity=0.233 Sum_probs=105.1
Q ss_pred EeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCC
Q 010543 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (507)
Q Consensus 204 ~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~ 283 (507)
..++|-.|-+.+...... +.. .|+|+||--.-+..+ .++...-..-.+-+..|.-.|-+.+++. .+.
T Consensus 211 ~~~~Ei~ah~kgA~~f~p--~~d-tIiDIGGQD~K~i~i--~dG~v~df~mN~~CAAGtGrFLE~~A~~--------Lgv 277 (396)
T COG1924 211 KVVVEISAHAKGARYFAP--DVD-TVIDIGGQDSKVIKL--EDGKVDDFTMNDKCAAGTGRFLEVIARR--------LGV 277 (396)
T ss_pred cceeeeehhHHHHHHhCC--CCc-EEEEecCcceeEEEE--eCCeeeeeEeccccccccchHHHHHHHH--------hCC
Confidence 456666665554422222 122 799999976665544 4776555444443333433333333333 343
Q ss_pred CCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCcCC
Q 010543 284 DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK-AMEDAGLEKNQ 362 (507)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~ 362 (507)
++. .+-+.+++.+..-.-+..+.+..++-. .+..=.....|+++..+...+.+.+.. +++.....+
T Consensus 278 ~v~-------E~~~~A~~~~~~v~i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~-- 344 (396)
T COG1924 278 DVE-------ELGKLALKATPPVKINSRCAVFAESEV----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE-- 344 (396)
T ss_pred CHH-------HHHHHHhcCCCCcccCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC--
Confidence 332 233444444443233333444332100 000001123467777777777666665 555533322
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhh
Q 010543 363 IDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 363 i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~ 412 (507)
. |+|+||.+....+.+++.+.+ +.++..+.+|+.+-|.|||+++...
T Consensus 345 ~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 345 P--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred C--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 2 999999999999999999999 7899999999999999999998643
No 56
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.71 E-value=7.4e-07 Score=80.74 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=124.0
Q ss_pred cCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEE
Q 010543 172 IKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFE 250 (507)
Q Consensus 172 ~~~~viTVP~~~~~~qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~ 250 (507)
-..+.+|-|..-....|+.|-+ ..+..||..+.+.-...-+.++-++.. =+|+|-|.|-|.+.-+.- + +.
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t------GvVvDSGDGVTHi~PVye--~-~~ 171 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT------GVVVDSGDGVTHIVPVYE--G-FV 171 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc------eEEEecCCCeeEEeeeec--c-ee
Confidence 3468899999988899999876 567889998887766666655554433 289999999999774431 1 11
Q ss_pred EEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC-----------cEEEEEEe--
Q 010543 251 VLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIE-- 317 (507)
Q Consensus 251 v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~-----------~~~~~~i~-- 317 (507)
.-.-.+...+.|+++++-|.+++..+ -|....+.+. +..+..|+.|+-. .+.++-++
T Consensus 172 l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 172 LPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred hhhhhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 11113335789999999999887533 3333333332 3344555555321 11222222
Q ss_pred eccCCcceEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 318 SLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 318 ~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
.+.+|. .+++-.++| |.+++|.+ ..+.+++-.+++.+.++ ..-.++|+|+||++..|++..+|++.+
T Consensus 242 tLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 242 TLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred ecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHH
Confidence 233443 345556666 45666643 35567777777776554 334679999999999999988887654
No 57
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.70 E-value=8.9e-07 Score=86.34 Aligned_cols=180 Identities=15% Similarity=0.142 Sum_probs=100.5
Q ss_pred EeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCC
Q 010543 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (507)
Q Consensus 204 ~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~ 283 (507)
.+++|.+|-|........ +.=.|+|+||-.+-+..+.- ++.+.-.....-+..|.-.|=+.+++. .+.
T Consensus 249 ~vitEItcHA~GA~~l~P---~vrTIIDIGGQDsK~I~ld~-~G~V~dF~MNDKCAAGTGrFLE~mA~~--------Lgi 316 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP---GTRTVLDIGGQDTKGIQIDD-HGIVENFQMNDRCAAGCGRYLGYIADE--------MNM 316 (432)
T ss_pred ceeeeHHHHHHHHHHHCC---CCCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccchHHHHHHHHH--------cCC
Confidence 466899998876543322 22379999998887543322 344433333333334444433333333 233
Q ss_pred CCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Q 010543 284 DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQI 363 (507)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i 363 (507)
++. .|-..+.++++...-+..+.+.-++-.-. -..--+++ ++++..+...+...+...+.+.. ..-
T Consensus 317 ~le-------El~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~i~ 382 (432)
T TIGR02259 317 GLH-------ELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG---GIT 382 (432)
T ss_pred CHH-------HHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---CCC
Confidence 322 12233333443333333444433310000 00001222 34455555555555555555431 112
Q ss_pred CeEEEEcCCCCCHHHHHHHHhhcC----CCCCCCCCCcchhhhhhHHHhh
Q 010543 364 DEIVLVGGSTRIPKVQQLLKDYFD----GKEPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 364 ~~V~lvGG~s~~p~l~~~l~~~~~----~~~v~~~~~p~~ava~GAa~~a 409 (507)
..|+++||.++.+++.+.|++.+. +.++..+.+|+.+-|.|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999984 4567788999999999999975
No 58
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.65 E-value=5.3e-06 Score=89.73 Aligned_cols=323 Identities=20% Similarity=0.310 Sum_probs=184.0
Q ss_pred EEEcHhHHhhhhhC----CChhHHHhHHhcC--------CCCCCHHHHhh----cccCCe-EEeccCCceeEEE-EEe--
Q 010543 81 RLIGEAAKNQAAVN----PDRTIFDVKRLIG--------RKFEDKEVQRD----MKLAPY-KIVNRDGKPYIQV-QIR-- 140 (507)
Q Consensus 81 ~~~G~~A~~~~~~~----~~~~~~~~k~llg--------~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~v-~~~-- 140 (507)
..+|.||....... ...-+.+.||+|= ..++......+ ....|+ ..++..|.+...+ ...
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 46899987665432 2234667888882 12221111000 011111 2236667765544 110
Q ss_pred -CCceeEeCHHHHHHHHHHHHHHHHHHHhCC--------------CcCcEEEEeCCCCCHHHHHHHHHHHHHc-------
Q 010543 141 -DGETKVFSPEEISAMILTKMKETAEAFLGK--------------KIKDAVVTVPAYFNDAQRQATKDAGIIA------- 198 (507)
Q Consensus 141 -~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~--------------~~~~~viTVP~~~~~~qr~~l~~aa~~a------- 198 (507)
..-...||-..+...+|..++.+|--+++. ...++++|+|......+|+.++++++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 112345788889999999998888655432 2457999999999999999999887764
Q ss_pred -CCc--------------------eeEe-echhhHHHHHhhccc------------------CC----------CceeEE
Q 010543 199 -GLN--------------------VARI-INEPTAAAIAYGLDK------------------KG----------GEKNIL 228 (507)
Q Consensus 199 -gl~--------------------~~~l-i~Ep~Aaa~~~~~~~------------------~~----------~~~~~l 228 (507)
|.. .+.+ -+|.+|.-+-|.++. .. +.-++.
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 421 1111 467777655552211 00 235689
Q ss_pred EEEcCCcceEEEEEEEe--CC---eEEE----EEEcCCCCCchHHHHHHHHHHH-HHHHHh---hc-------------C
Q 010543 229 VFDLGGGTFDVSILTID--NG---VFEV----LSTNGDTHLGGEDFDQRVMEYF-IKLIKK---KH-------------G 282 (507)
Q Consensus 229 v~D~Gggt~dvsv~~~~--~~---~~~v----~~~~~~~~~GG~~id~~l~~~l-~~~~~~---~~-------------~ 282 (507)
-+|+||||||+.+-.+. .+ ...+ ....| -.+.|+||-..+.+.+ +..+.+ +. |
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG 648 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFG 648 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhC
Confidence 99999999999887765 22 1111 22233 4577777766655444 322222 11 2
Q ss_pred CCCccC-HH-------------HHHHHHHHHHHHHHHhccCcEEEEEEeec---------------------------cC
Q 010543 283 KDISKD-KR-------------AIGKLRREAERAKRALSSQHQVRVEIESL---------------------------FD 321 (507)
Q Consensus 283 ~~~~~~-~~-------------~~~~L~~~~e~~K~~ls~~~~~~~~i~~~---------------------------~~ 321 (507)
.+-... .+ ...+++.++|..-.. .........+.++ ++
T Consensus 649 ~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fd 727 (1002)
T PF07520_consen 649 GDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFD 727 (1002)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcc
Confidence 110000 00 011223333332110 0000111111111 11
Q ss_pred CcceEEeecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCC-------
Q 010543 322 GIDFSEPLTRARFEELNN---DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP------- 391 (507)
Q Consensus 322 ~~~~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v------- 391 (507)
-.+..+.|+..++...+. ..+...+..+-+++..-+ -|-++|+|--|++|+|+..+++..| .++
T Consensus 728 ildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~ 801 (1002)
T PF07520_consen 728 ILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLH 801 (1002)
T ss_pred eecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecC
Confidence 134567889998888774 566777777777776633 5679999999999999999999884 211
Q ss_pred -------------CCCCCcchhhhhhHHHhhhh
Q 010543 392 -------------NKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 392 -------------~~~~~p~~ava~GAa~~a~~ 411 (507)
.+-.||.+.+|.||.+....
T Consensus 802 ~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La 834 (1002)
T PF07520_consen 802 GYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLA 834 (1002)
T ss_pred CeeecccccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 24459999999999887643
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.54 E-value=1.4e-06 Score=85.47 Aligned_cols=207 Identities=20% Similarity=0.236 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEc
Q 010543 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDL 232 (507)
Q Consensus 154 ~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa-~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~ 232 (507)
..+.+|+... +.........+++|-|..|....|+.+-+.. +.-+.+.+.+ .-.|..++++ ..+=+|+|+
T Consensus 82 e~iw~~if~~-~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g------~ttG~VvD~ 152 (372)
T KOG0676|consen 82 EKIWHHLFYS-ELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASG------RTTGLVVDS 152 (372)
T ss_pred HHHHHHHHHH-hhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcC------CeeEEEEEc
Confidence 5666666621 1122234468999999999999999997754 3334443333 2233233332 334599999
Q ss_pred CCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCcc-CHHHHHHHHHHHHHHHHHhccCc-
Q 010543 233 GGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISK-DKRAIGKLRREAERAKRALSSQH- 310 (507)
Q Consensus 233 Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~-~~~~~~~L~~~~e~~K~~ls~~~- 310 (507)
|.|-+++.-+- ++ +.+........+||+++++.+...|.+ .+..... ..+ +-++.+|+.++-..
T Consensus 153 G~gvt~~vPI~--eG-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~~------eIv~diKeklCyval 218 (372)
T KOG0676|consen 153 GDGVTHVVPIY--EG-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAEF------EIVRDIKEKLCYVAL 218 (372)
T ss_pred CCCceeeeecc--cc-cccchhhheecccchhhHHHHHHHHHh-----cccccccccHH------HHHHHhHhhhccccc
Confidence 99988755433 12 222233445689999999977776655 2222211 111 22444444443111
Q ss_pred -------------EEEEEEeeccCCcceEEeecHHHH---HHHHHHHH-----HHHHHHHHHHHHHc--CCCcCCCCeEE
Q 010543 311 -------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDA--GLEKNQIDEIV 367 (507)
Q Consensus 311 -------------~~~~~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~V~ 367 (507)
....... +.|+.- +.+..+.| |-+++|.+ ..+.+.+-..+.++ ++.+.-..+|+
T Consensus 219 d~~~e~~~~~~~~~l~~~y~-lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~niv 295 (372)
T KOG0676|consen 219 DFEEEEETANTSSSLESSYE-LPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIV 295 (372)
T ss_pred ccchhhhccccccccccccc-CCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheE
Confidence 0111111 233322 44444444 23334322 33344444444443 23344567899
Q ss_pred EEcCCCCCHHHHHHHHhhc
Q 010543 368 LVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 368 lvGG~s~~p~l~~~l~~~~ 386 (507)
|+||++..|++.+++.+.+
T Consensus 296 LsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 296 LSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred EeCCcccchhHHHHHHHHH
Confidence 9999999999999988866
No 60
>PRK13317 pantothenate kinase; Provisional
Probab=98.32 E-value=0.00011 Score=70.32 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCeEEEEc-CCCCCHHHHHHHHhhcC--CCCCCCCCCcchhhhhhHHHhhh
Q 010543 363 IDEIVLVG-GSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 363 i~~V~lvG-G~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~GAa~~a~ 410 (507)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|+.+.|.|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 56899999 79999999999998874 56778889999999999999875
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.18 E-value=2.3e-05 Score=72.34 Aligned_cols=193 Identities=22% Similarity=0.225 Sum_probs=104.6
Q ss_pred HHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHH
Q 010543 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (507)
Q Consensus 193 ~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 272 (507)
+..+..|.++..-=-|+.+|.+..... ...+..+.++|+|||+||.+++..++.. .-+.-.| .|+-++..+...
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTT-PGt~~PlaIlDmG~GSTDAsii~~~g~v-~~iHlAG----AG~mVTmlI~sE 176 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTT-PGTDKPLAILDMGGGSTDASIINRDGEV-TAIHLAG----AGNMVTMLINSE 176 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTS-TT--SSEEEEEE-SSEEEEEEE-TTS-E-EEEEEE-----SHHHHHHHHHHH
T ss_pred HHHHHHCCceEEccccHHHHHhcccCC-CCCCCCeEEEecCCCcccHHHhCCCCcE-EEEEecC----CchhhHHHHHHh
Confidence 344567888877788999999887443 3356778999999999999999865443 2222222 456666665443
Q ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccC-----------cEEEEEEeeccCC-------------cceEEe
Q 010543 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIESLFDG-------------IDFSEP 328 (507)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~-----------~~~~~~i~~~~~~-------------~~~~~~ 328 (507)
.+.+- +.-+|.+|+.=-.. .+..+.-+.+... ..+...
T Consensus 177 --------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~ 238 (332)
T PF08841_consen 177 --------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGD 238 (332)
T ss_dssp --------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESST
T ss_pred --------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCC
Confidence 23211 15567777642111 0111110000000 011112
Q ss_pred ecHHHHHHHHHHHHHHH-HHHHHHHHHHc--CCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCC-------CCCCCCcc
Q 010543 329 LTRARFEELNNDLFRKT-MGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE-------PNKGVNPD 398 (507)
Q Consensus 329 itr~~~e~~~~~~~~~i-~~~i~~~l~~~--~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~-------v~~~~~p~ 398 (507)
++-+++..+-+..-+++ ..-..++|++. .-+..+|+.|+|+||++.-.=+.+++.+.+.... +.-..-|.
T Consensus 239 ~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPR 318 (332)
T PF08841_consen 239 LSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPR 318 (332)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTS
T ss_pred ccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCch
Confidence 33333333333333222 22233444442 2234578999999999998889999998885433 34445788
Q ss_pred hhhhhhHHHhh
Q 010543 399 EAVAYGAAVQG 409 (507)
Q Consensus 399 ~ava~GAa~~a 409 (507)
.|||.|.++..
T Consensus 319 NAVATGLvlsy 329 (332)
T PF08841_consen 319 NAVATGLVLSY 329 (332)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.71 E-value=0.0054 Score=63.31 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred eEEeecHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCC----------
Q 010543 325 FSEPLTRARFEELNNDL---FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP---------- 391 (507)
Q Consensus 325 ~~~~itr~~~e~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v---------- 391 (507)
+.+.|.-.++++.+-.- +......+.++++. .+-|-++|+|--++.|+++..++...| .++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 33455656665544332 33334444444443 235679999999999999999988763 221
Q ss_pred ----------CCCCCcchhhhhhHHHhhhh
Q 010543 392 ----------NKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 392 ----------~~~~~p~~ava~GAa~~a~~ 411 (507)
-+..||.+..|.||.+.+..
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Ls 846 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALS 846 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHH
Confidence 23458999999999887754
No 63
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.62 E-value=0.022 Score=54.85 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHh----hcCCCCCCCCCCcchhhhhhHHHhh
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD----YFDGKEPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~----~~~~~~v~~~~~p~~ava~GAa~~a 409 (507)
.++++...+.+.+.+...+.+...... .|+|+||..+.+.+++.+++ ..+..++..+..|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 455666666667777777766543321 29999999999877776644 3444456677789999999999875
No 64
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.013 Score=61.63 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=40.4
Q ss_pred HHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 351 ~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
+.|.+. ....++.|.++||+++++.+.+++.+.+ +.++..+...+.+.+-||++.+..
T Consensus 392 ~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 392 EALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred HHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcccchHHHHHHHHHHH
Confidence 444443 1234679999999999999999999999 788876544444445555444443
No 65
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.60 E-value=0.00085 Score=66.99 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=86.1
Q ss_pred eEeCHHHHHHHHHHHHHHHHHHHhCCCc-----CcEEEEeCCCCCHHHHHHH-HHHHHHcCCceeEeechhhHHHHHhhc
Q 010543 145 KVFSPEEISAMILTKMKETAEAFLGKKI-----KDAVVTVPAYFNDAQRQAT-KDAGIIAGLNVARIINEPTAAAIAYGL 218 (507)
Q Consensus 145 ~~~~~~~l~~~~L~~l~~~~~~~~~~~~-----~~~viTVP~~~~~~qr~~l-~~aa~~agl~~~~li~Ep~Aaa~~~~~ 218 (507)
...+..++++++-+-+.....+.+.-+. ..+|+.||-.|.....+.+ .-.....||....++.|+.|+.+..++
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 4457777777665444444444444332 3589999999997776555 446778999999999999999988876
Q ss_pred ccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 219 DKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 219 ~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
.. -.|||+|+-+|.++.++ +|.. ...+.-....||.||++.|+-++.
T Consensus 275 ss------~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 SS------ACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred cc------eeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHH
Confidence 53 37999999999988776 3321 111222247899999999987654
No 66
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.58 E-value=0.00043 Score=69.70 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=49.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---echhhHHHHHhhccc--CCCceeEEEEEcCCcceEEEEEEEe
Q 010543 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTID 245 (507)
Q Consensus 174 ~~viTVP~~~~~~qr~~l~~aa~~agl~~~~l---i~Ep~Aaa~~~~~~~--~~~~~~~lv~D~Gggt~dvsv~~~~ 245 (507)
-++||=-+.-.++.|+.+...+..||==++.. -.|+.-|+...+... ......++=+|+||||+.+++|+..
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G 163 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNG 163 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECC
Confidence 46788887778888999988888887433322 234444444332211 1256789999999999999999853
No 67
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=97.54 E-value=0.0048 Score=58.38 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=58.6
Q ss_pred cCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeEeechhhHHHHHhh---cccCC----CceeEEEEEcCCcceEEEEEE
Q 010543 172 IKDAVVTVPAYFNDA-QRQATKDAGIIAGLNVARIINEPTAAAIAYG---LDKKG----GEKNILVFDLGGGTFDVSILT 243 (507)
Q Consensus 172 ~~~~viTVP~~~~~~-qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~---~~~~~----~~~~~lv~D~Gggt~dvsv~~ 243 (507)
..++++|-|.+--+. |.....-..+..+++.+ ..-+.|+..++. .+..+ ...+.+|+|-|-+-|.+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 457899999544343 44444445666777643 333444433332 22211 356899999999988877554
Q ss_pred EeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 244 IDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 244 ~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
......+-+ .....||..++..|.+.+.
T Consensus 171 ~g~~~~qaV---~RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 KGIPYYQAV---KRIDVGGKALTNLLKETIS 198 (400)
T ss_pred cCcchhhce---EEeecchHHHHHHHHHHhh
Confidence 322221111 1357999999999988865
No 68
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.43 E-value=0.021 Score=54.58 Aligned_cols=72 Identities=17% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcC-CCCCHHHHHHHHhhcC--CCCCCCCCCcchhhhhhHHH
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGG-STRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG-~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~GAa~ 407 (507)
|+++..++.-+.+.|-.. ....-....+..|+++|| ....|.+++.+...+. +.++..+.+....+|.||++
T Consensus 204 eDiAaSLl~mV~~nIg~l-A~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQI-AYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 555566665555544321 111112244789999999 6788999999988652 45677788999999999986
No 69
>PRK10854 exopolyphosphatase; Provisional
Probab=97.04 E-value=0.058 Score=56.88 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHh-hcccCC-CceeEEEE
Q 010543 153 SAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVF 230 (507)
Q Consensus 153 ~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~-~~~~~~-~~~~~lv~ 230 (507)
.-..|+..++.++.+ +.....+|-|--.-=-.+..+.+.++-+..|+++ .+++..+-|.+.| +..... ..+..+|+
T Consensus 65 ~~~~L~~F~~~~~~~-~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvv 142 (513)
T PRK10854 65 GLNCLSLFAERLQGF-SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVI 142 (513)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEE
Confidence 344455555555443 2221223322222112344555666667789986 6666666666555 333222 23568999
Q ss_pred EcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHH
Q 010543 231 DLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (507)
Q Consensus 231 D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (507)
|+|||+|.+++++-.. .....+ .++|.-.+.+.+
T Consensus 143 DIGGGStEl~~~~~~~--~~~~~S---~~lG~vrl~e~f 176 (513)
T PRK10854 143 DIGGGSTELVIGENFE--PILVES---RRMGCVSFAQLY 176 (513)
T ss_pred EeCCCeEEEEEecCCC--eeEeEE---EecceeeHHhhh
Confidence 9999999999987432 222111 378887766655
No 70
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.03 E-value=0.027 Score=59.11 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhhHHHHHh-hcccCC-CceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCch
Q 010543 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 262 (507)
Q Consensus 185 ~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~-~~~~~~-~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG 262 (507)
.+..+.+.++-+..|+++ .+++..+-|.+.| +..... ..+..+|+|+|||+|.+++++- +.+. .....++|.
T Consensus 91 ~N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~~---~~~Sl~lG~ 164 (496)
T PRK11031 91 VNADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTG--AQAT---SLFSLSMGC 164 (496)
T ss_pred cCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecC--Ccee---eeeEEeccc
Confidence 344556667777789986 6666666665555 333221 2346899999999999999873 2221 122357888
Q ss_pred HHHHHHHH
Q 010543 263 EDFDQRVM 270 (507)
Q Consensus 263 ~~id~~l~ 270 (507)
-.+.+.+.
T Consensus 165 vrl~e~f~ 172 (496)
T PRK11031 165 VTWLERYF 172 (496)
T ss_pred hHHHHHhc
Confidence 87666654
No 71
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.87 E-value=0.0011 Score=60.48 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-cCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 334 FEELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
..++++-+++.+.-.+...++...-. ...++.|+++||.++++.+.+.+.+.+ +++|....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 44555555555555554444433111 233889999999999999999999999 677766544 88999999998863
No 72
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.63 E-value=0.0066 Score=54.96 Aligned_cols=30 Identities=37% Similarity=0.324 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHH
Q 010543 186 AQRQATKDAGIIAGLNVARIINEPTAAAIA 215 (507)
Q Consensus 186 ~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~ 215 (507)
...+.+.++++.+|+++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788889999999999999999998754
No 73
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=96.57 E-value=0.025 Score=57.33 Aligned_cols=119 Identities=13% Similarity=0.010 Sum_probs=73.3
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhCCC----cCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHHhhcccC
Q 010543 147 FSPEEISAMILTKMKETAEAFLGKK----IKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKK 221 (507)
Q Consensus 147 ~~~~~l~~~~L~~l~~~~~~~~~~~----~~~~viTVP~~~~~~qr~~l~~-aa~~agl~~~~li~Ep~Aaa~~~~~~~~ 221 (507)
++--++...+|.++.. ++|.. ...+++|-+..-...+|+.|.+ ..+..|++.+.+=-+..=+.+. ....
T Consensus 91 vtNwel~E~ilDY~F~----~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--N~~~ 164 (645)
T KOG0681|consen 91 VTNWELMEQILDYIFG----KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--NYGK 164 (645)
T ss_pred cccHHHHHHHHHHHHH----hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh--ccCc
Confidence 3444555555555554 34422 3468899998777888998877 5667899887663222222111 1111
Q ss_pred CCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 222 GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 222 ~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
..+...+++++|..+|.|-.+--+...+ ......++||.....-|.+++.
T Consensus 165 ~~~~~~liis~g~~~T~vipvldG~~il---~~~kRiN~GG~qa~dYL~~Lmq 214 (645)
T KOG0681|consen 165 SSNKSGLIISMGHSATHVIPVLDGRLIL---KDVKRINWGGYQAGDYLSRLMQ 214 (645)
T ss_pred ccCcceEEEecCCCcceeEEEecCchhh---hcceeeccCcchHHHHHHHHHh
Confidence 1344789999999999988776433222 2233368899887777777665
No 74
>PRK15027 xylulokinase; Provisional
Probab=96.27 E-value=0.012 Score=61.75 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCC
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~ 416 (507)
.++.|+++||+++++.+.+.+.+.+ ++++....+.+++.++|||+.|+.-.+..
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G~~ 439 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANPE 439 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcCCc
Confidence 4789999999999999999999999 78886665667788999999998665543
No 75
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.24 E-value=0.036 Score=52.86 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=45.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---echhhHHHHHhhccc--CCCceeEEEEEcCCcceEEEEEEEe
Q 010543 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTID 245 (507)
Q Consensus 174 ~~viTVP~~~~~~qr~~l~~aa~~agl~~~~l---i~Ep~Aaa~~~~~~~--~~~~~~~lv~D~Gggt~dvsv~~~~ 245 (507)
-++||=-..-..+.|..+......||==++.. -.|+.-|....+... ..+...++=+|+||||+.+++|...
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~G 165 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAG 165 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeeccc
Confidence 46677776666777777776666665322222 234444433332211 1256788999999999999999754
No 76
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.22 E-value=0.014 Score=62.06 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=64.2
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHH
Q 010543 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~ 407 (507)
.-+|.++.++++.+++.+.=.+...++...-....++.|.++||.++++.+.+.+.+.+ +++|....++ ++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHH
Confidence 34566677777777777766666555543211234789999999999999999999999 7888776554 578999999
Q ss_pred hhhhhcCC
Q 010543 408 QGGILSGE 415 (507)
Q Consensus 408 ~a~~~~~~ 415 (507)
.|+.-.+.
T Consensus 487 lA~~~~G~ 494 (541)
T TIGR01315 487 LGAKAAGT 494 (541)
T ss_pred HHHHhcCc
Confidence 99765543
No 77
>PLN02669 xylulokinase
Probab=96.21 E-value=0.017 Score=61.57 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555554445555444332 34789999999999999999999999 6788766555 6789999999965
No 78
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.1 Score=54.08 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCC-ceeEEEEEcCCcceEEEEEEE
Q 010543 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGG-EKNILVFDLGGGTFDVSILTI 244 (507)
Q Consensus 186 ~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~-~~~~lv~D~Gggt~dvsv~~~ 244 (507)
+.-+.+..+-+..|+++..+=-|-+|-..+.+....-. ....+|+|+|||+|.+++...
T Consensus 89 N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 89 NGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 44566777888889986444444444433334433333 778899999999999999873
No 79
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.72 E-value=0.034 Score=58.37 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhc
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~ 413 (507)
+++.+.+++.+.-.+...++... .....++.|.++||.++++.+.+.+.+.+ ++++.... ..++.++|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhc
Confidence 33444444444444443333321 11124789999999999999999999999 78887654 55688999999998765
Q ss_pred CC
Q 010543 414 GE 415 (507)
Q Consensus 414 ~~ 415 (507)
+.
T Consensus 440 g~ 441 (481)
T TIGR01312 440 GE 441 (481)
T ss_pred CC
Confidence 53
No 80
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.64 E-value=0.036 Score=58.47 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhc
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~ 413 (507)
.++++.+++.+.-.+...++... .....++.|.++||+++++.+.+.+.+.+ +++|....+ .++.++|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERPVV-AETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEecCc-ccchHHHHHHHHhhhc
Confidence 34444555555444444433321 11123788999999999999999999999 788876544 4688999999997655
Q ss_pred CC
Q 010543 414 GE 415 (507)
Q Consensus 414 ~~ 415 (507)
+.
T Consensus 453 G~ 454 (498)
T PRK00047 453 GF 454 (498)
T ss_pred Cc
Confidence 53
No 81
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.62 E-value=0.039 Score=58.23 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcC
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~ 414 (507)
++++.+++.+.-.+...++...- ....++.|.++||.++++.+.+.+.+.| +++|.... ..++.+.|||+.|+.-.+
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34444444444444444333211 1123788999999999999999999999 78887665 445789999999986655
Q ss_pred CC
Q 010543 415 EG 416 (507)
Q Consensus 415 ~~ 416 (507)
..
T Consensus 457 ~~ 458 (504)
T PTZ00294 457 VW 458 (504)
T ss_pred cc
Confidence 43
No 82
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.60 E-value=0.17 Score=49.54 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHh-hcccCCCceeEEEEEc
Q 010543 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKGGEKNILVFDL 232 (507)
Q Consensus 154 ~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~-~~~~~~~~~~~lv~D~ 232 (507)
...|+..++.++.+ +.....++-|--..--.+..+.+.+.-+..|+++ ++++..+-|.+.| +..........+++|+
T Consensus 55 ~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~Di 132 (300)
T TIGR03706 55 LEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDI 132 (300)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 34455555555443 2221223333322222334444555556779876 6777777777665 2222212223499999
Q ss_pred CCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHH
Q 010543 233 GGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (507)
Q Consensus 233 Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (507)
|||+|.++.+.-.... .....++|...+.+.+
T Consensus 133 GGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 133 GGGSTELILGKDFEPG-----EGVSLPLGCVRLTEQF 164 (300)
T ss_pred cCCeEEEEEecCCCEe-----EEEEEccceEEhHHhh
Confidence 9999999988633211 1222466666655553
No 83
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.047 Score=56.14 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCc-CCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhc
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAGLEK-NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~ 413 (507)
+.+....++.+.-.++..|+...... ..++.+.+.||.|+.|.+.+.+.+.+ +.++.++.+.+. ++.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 33333444444444443333322222 45888999999999999999999999 789999988887 9999999998776
Q ss_pred CC
Q 010543 414 GE 415 (507)
Q Consensus 414 ~~ 415 (507)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 64
No 84
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.56 E-value=0.038 Score=58.22 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhc
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~ 413 (507)
.++++.+++.+.-.+...++... .....++.|.++||+++++.+.+.+.+.+ ++++....+ .++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~~-~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPKV-TETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEecCC-CcchHHHHHHHHHhhc
Confidence 34444444444444444433321 11224789999999999999999999999 788876544 5678999999997665
Q ss_pred CCC
Q 010543 414 GEG 416 (507)
Q Consensus 414 ~~~ 416 (507)
+.+
T Consensus 449 G~~ 451 (493)
T TIGR01311 449 GYW 451 (493)
T ss_pred CcC
Confidence 543
No 85
>PRK04123 ribulokinase; Provisional
Probab=95.52 E-value=0.036 Score=59.17 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-CCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcC
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~ 414 (507)
++++.+++.+.-.+...++........++.|.++||+ ++++.+.+.+.+.+ +.+|.... ..++.|.|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVVA-SDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEecC-ccccchHHHHHHHHHHhc
Confidence 3445555555433333333221112247889999999 99999999999999 78886554 456889999999986555
Q ss_pred C
Q 010543 415 E 415 (507)
Q Consensus 415 ~ 415 (507)
.
T Consensus 490 ~ 490 (548)
T PRK04123 490 A 490 (548)
T ss_pred c
Confidence 3
No 86
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.48 E-value=0.036 Score=57.87 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 335 EELNNDLFRKTMGPVKK---AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
.++++-+++.+.-.+.. .+++.+. ..++.|.++||+++++.+.+.+.+.+ +++|....++ ++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHH
Confidence 34445555554444433 3444321 23788999999999999999999999 7888766554 6789999999986
Q ss_pred hcCC
Q 010543 412 LSGE 415 (507)
Q Consensus 412 ~~~~ 415 (507)
-.+.
T Consensus 441 a~G~ 444 (465)
T TIGR02628 441 GVGE 444 (465)
T ss_pred hcCc
Confidence 6553
No 87
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.47 E-value=0.041 Score=58.58 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=44.3
Q ss_pred CCCeEEEEcCC-CCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCC
Q 010543 362 QIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (507)
Q Consensus 362 ~i~~V~lvGG~-s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~ 415 (507)
.++.|.++||+ ++++.+.+.+.+.| +.+|....++ ++.|.|||+.|+.-.+.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 47899999999 99999999999999 7888766554 57899999999866553
No 88
>PRK10331 L-fuculokinase; Provisional
Probab=95.45 E-value=0.046 Score=57.19 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcC
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~ 414 (507)
++.+-+++.+.-.+...++... .....++.|.++||+++++.+.+.+.+.+ ++++..... .++.++|||+.|+.-.+
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 3444445544444444333321 11224789999999999999999999999 788866554 46889999999976555
Q ss_pred CC
Q 010543 415 EG 416 (507)
Q Consensus 415 ~~ 416 (507)
..
T Consensus 440 ~~ 441 (470)
T PRK10331 440 EF 441 (470)
T ss_pred CC
Confidence 43
No 89
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.33 E-value=0.022 Score=55.38 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHh
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~ 408 (507)
.+++-..+.+.+.|++.....+..+.+. .++.+||.+ |.+...+.+.++-..+..+..+.-+.|.||++.
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3344444555555555544445554332 355566665 678888888884335666666788899999863
No 90
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.31 E-value=0.013 Score=48.76 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=27.5
Q ss_pred EEEEEcCCcceEEEEEEEeC-CeEEEEEEcCCC--CCchHHHH--HHHHHHHH
Q 010543 227 ILVFDLGGGTFDVSILTIDN-GVFEVLSTNGDT--HLGGEDFD--QRVMEYFI 274 (507)
Q Consensus 227 ~lv~D~Gggt~dvsv~~~~~-~~~~v~~~~~~~--~~GG~~id--~~l~~~l~ 274 (507)
++++|+|++++++.+++.+. +.++++.....+ .+=+..++ +.+.+-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 57999999999999999733 334443222111 11167777 66666543
No 91
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.27 E-value=0.051 Score=57.45 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhh
Q 010543 335 EELNNDLFRKTMGPVKK----AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~----~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~ 410 (507)
+++++.+++.+.-.+.. ..+..+ ..++.|.++||.++++.+.+.+.+.+ ++++....++ ++.+.|||+.|.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~ 447 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGL 447 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHH
Confidence 34444444444444433 333233 24789999999999999999999999 7888766554 588999999997
Q ss_pred hhcCC
Q 010543 411 ILSGE 415 (507)
Q Consensus 411 ~~~~~ 415 (507)
.-.+.
T Consensus 448 ~~~G~ 452 (505)
T TIGR01314 448 KALGL 452 (505)
T ss_pred HhcCc
Confidence 65553
No 92
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.20 E-value=0.3 Score=50.22 Aligned_cols=82 Identities=27% Similarity=0.390 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHH
Q 010543 330 TRARFEELNNDLFRKT---MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (507)
Q Consensus 330 tr~~~e~~~~~~~~~i---~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa 406 (507)
+.+.+-.+..-.+..+ .+.|-+++++.++. |+.|+++||-.+.|.+.+...+.. ++++..+ ..+++++.|+|
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsA 473 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAA 473 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHH
Confidence 3343334444444443 34455666665554 899999999999999999999999 6776655 56788999999
Q ss_pred HhhhhhcCCC
Q 010543 407 VQGGILSGEG 416 (507)
Q Consensus 407 ~~a~~~~~~~ 416 (507)
+.++.-.+.+
T Consensus 474 m~~avAag~~ 483 (544)
T COG1069 474 MFAAVAAGVH 483 (544)
T ss_pred HHHHHHhccC
Confidence 9998665544
No 93
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.08 E-value=0.061 Score=55.98 Aligned_cols=52 Identities=27% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCC
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~ 416 (507)
.++.|.++||+++++.+.+.+.+.+ +++|... +.++.|+|||+.++.-.+..
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcCCc
Confidence 4789999999999999999999999 7888643 36688999999987665543
No 94
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.05 E-value=0.019 Score=58.10 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCCcC--CCCeEEEEcCCCCCHHHHHHHHhhcC-------CCCCCCCCCcchhhhhhHHHhhhh
Q 010543 344 KTMGPVKKAMEDAGLEKN--QIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 344 ~i~~~i~~~l~~~~~~~~--~i~~V~lvGG~s~~p~l~~~l~~~~~-------~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
.+.+.+...|.+...... .+++|+|+||+|.+|++.++|+..+- ...|.+..||-...=+||+.+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 445555566655432222 28899999999999999999998762 235677889999999999999875
No 95
>PLN02295 glycerol kinase
Probab=94.94 E-value=0.074 Score=56.28 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc----CC--CcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHh
Q 010543 335 EELNNDLFRKTMGPVKKAMEDA----GL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~----~~--~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~ 408 (507)
.++++.+++.+.-.+...++.. +. ....++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHH
Confidence 3444455555544444444332 21 1224788999999999999999999999 78886554 456889999999
Q ss_pred hhhhcCC
Q 010543 409 GGILSGE 415 (507)
Q Consensus 409 a~~~~~~ 415 (507)
|+.-.+.
T Consensus 457 A~~~~G~ 463 (512)
T PLN02295 457 AGLAVGL 463 (512)
T ss_pred HHhhcCc
Confidence 8765553
No 96
>PRK13318 pantothenate kinase; Reviewed
Probab=94.92 E-value=1.1 Score=42.85 Aligned_cols=20 Identities=35% Similarity=0.840 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010543 38 VIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (507)
+++||+|+|++++++++++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 97
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.84 E-value=0.071 Score=56.54 Aligned_cols=52 Identities=29% Similarity=0.350 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCC
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~ 415 (507)
.++.|.++||+++++.+.+.+.+.+ ++++....++ ++.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 4789999999999999999999999 7888766544 57899999999766553
No 98
>PRK13321 pantothenate kinase; Reviewed
Probab=94.75 E-value=1.1 Score=42.70 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010543 38 VIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (507)
+++||+|+|+++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998663
No 99
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.61 E-value=0.11 Score=51.78 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=46.3
Q ss_pred HcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhh
Q 010543 355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (507)
Q Consensus 355 ~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~ 411 (507)
..+.+....+.|+++||.|+..-|-+.|.+.| +.+|... +...+.|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34555667889999999999999999999999 7777765 6778899999999754
No 100
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.46 E-value=0.11 Score=54.37 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCCC
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~~ 416 (507)
.++.|.++||+++++.+.+.+.+.+ +++|.... .++.+.|||+.|..-.+..
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCCc
Confidence 3788999999999999999999999 78886543 3788999999987665543
No 101
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=94.10 E-value=1.2 Score=43.72 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
.++.|+|+||.++..++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4678999999999999999998887
No 102
>PRK14878 UGMP family protein; Provisional
Probab=93.89 E-value=6.8 Score=38.69 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=48.7
Q ss_pred CcCcEEEEe-CCCCCHHH--HHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCC
Q 010543 171 KIKDAVVTV-PAYFNDAQ--RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG 247 (507)
Q Consensus 171 ~~~~~viTV-P~~~~~~q--r~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~ 247 (507)
+++.+.+|. |..++.-. ...-+..+...+.+.+. ++.-.|-+++..+....+..-++++|= |++.+..++ .+
T Consensus 65 did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~~~-v~h~~~Ha~sa~~~s~~~~~l~l~vsG--g~t~i~~~~--~~ 139 (323)
T PRK14878 65 DIDAVAVSQGPGLGPALRVGATAARALALKYNKPLVP-VNHCIAHIEIGRLTTGAKDPVVLYVSG--GNTQVLAFR--GG 139 (323)
T ss_pred HCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCccc-cchHHHHHHhhhhcCCCCCCEEEEEEc--CCeEEEEEe--CC
Confidence 456778877 66666322 22234445555666443 343433333221222212235677773 477776555 56
Q ss_pred eEEEEEEcCCCCCchHHHHHHH
Q 010543 248 VFEVLSTNGDTHLGGEDFDQRV 269 (507)
Q Consensus 248 ~~~v~~~~~~~~~GG~~id~~l 269 (507)
.++++.. ....--|+.+|..-
T Consensus 140 ~~~~~~~-t~d~s~Gr~fD~vA 160 (323)
T PRK14878 140 RYRVFGE-TLDIAIGNALDTFA 160 (323)
T ss_pred eEEEeee-ecCcchhHHHHHHH
Confidence 6887776 33456667776544
No 103
>PF13941 MutL: MutL protein
Probab=93.28 E-value=0.36 Score=49.45 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=26.6
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEEeCCCCCcccceEE
Q 010543 38 VIGIDLGTTYSCVGVYK--NGHVEIIANDQGNRITPSWV 74 (507)
Q Consensus 38 viGID~GTt~s~va~~~--~g~~~ii~~~~g~~~~Ps~v 74 (507)
++.+|||+|+|++...+ .+..+++ |+-..||.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc
Confidence 68899999999999998 7777777 334557766
No 104
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.22 E-value=0.45 Score=46.13 Aligned_cols=77 Identities=23% Similarity=0.421 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCceeEeechhhHHHHHh-hcccC-CCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHH
Q 010543 187 QRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (507)
Q Consensus 187 qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~-~~~~~-~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (507)
..+.+.+.-+..|+++ .+++..+-|.+.| +.... ......+++|+|||+|.++.++ ++.+.. ....++|.-.
T Consensus 73 ~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vr 146 (285)
T PF02541_consen 73 SDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFE--NGKVVF---SQSLPLGAVR 146 (285)
T ss_dssp HHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEE--TTEEEE---EEEES--HHH
T ss_pred HHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEE--CCeeeE---eeeeehHHHH
Confidence 3444555666789886 5566655555544 22221 2467789999999999999887 333222 2225788887
Q ss_pred HHHHH
Q 010543 265 FDQRV 269 (507)
Q Consensus 265 id~~l 269 (507)
+.+.+
T Consensus 147 l~e~~ 151 (285)
T PF02541_consen 147 LTERF 151 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 105
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.06 E-value=0.045 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=17.4
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 010543 38 VIGIDLGTTYSCVGVYKNGHV 58 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~ 58 (507)
+++||+|++.++++++..+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 589999999999999988743
No 106
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=92.57 E-value=1.2 Score=44.44 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCC----CCcchhhhhhHHHhhhhh
Q 010543 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG----VNPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~----~~p~~ava~GAa~~a~~~ 412 (507)
.-+..-+.+.|.+.++... ...+.|+++||+++.|+|.++|++.++ .++... .+++.-=|..-|+.|...
T Consensus 266 aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 266 ATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 3334444455555554432 225689999999999999999999996 444322 345544444556666443
No 107
>PRK09557 fructokinase; Reviewed
Probab=92.32 E-value=12 Score=36.52 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=24.9
Q ss_pred HcCCceeEeechhhHHHHHhhccc-CCCceeEEEEEcCCc
Q 010543 197 IAGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGG 235 (507)
Q Consensus 197 ~agl~~~~li~Ep~Aaa~~~~~~~-~~~~~~~lv~D~Ggg 235 (507)
..|++ +.+.++..|+|++-.... ....++++.+.+|.|
T Consensus 95 ~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 95 RLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 34775 678999999998764432 223466777777743
No 108
>PRK09698 D-allose kinase; Provisional
Probab=91.82 E-value=13 Score=36.10 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=25.3
Q ss_pred HcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCc
Q 010543 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGG 235 (507)
Q Consensus 197 ~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Ggg 235 (507)
..|++ +.+.++..|+|++-.........+++.+.+|.|
T Consensus 103 ~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 103 TLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred HhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 35775 678999999887643322223457888888865
No 109
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.51 E-value=2.8 Score=41.10 Aligned_cols=69 Identities=26% Similarity=0.408 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCC---CCCCCCCCc----chhhhhhHHHhhhhhc
Q 010543 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG---KEPNKGVNP----DEAVAYGAAVQGGILS 413 (507)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~---~~v~~~~~p----~~ava~GAa~~a~~~~ 413 (507)
+++.+.+.|...+.. ..+++.|+|+|-.+++|-+.+.+++.|.. .++.. ..+ -...|.|||+.|.-+.
T Consensus 243 ~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~-l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 243 MIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRK-LEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceee-cccccccchhhhhhHHHHhhhhh
Confidence 344444444433332 23578899999999999888888777732 12221 122 2348999999987665
Q ss_pred C
Q 010543 414 G 414 (507)
Q Consensus 414 ~ 414 (507)
+
T Consensus 318 G 318 (343)
T PF07318_consen 318 G 318 (343)
T ss_pred c
Confidence 4
No 110
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.25 E-value=2.9 Score=38.94 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCC
Q 010543 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDA-QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGG 234 (507)
Q Consensus 156 ~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~-qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gg 234 (507)
=.+.+++.+++.++.++ .++++-..|... .....++.+. |+. .|.| .+.. ....+.++++|+|.
T Consensus 75 GVe~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW---------~Ata-~~~~--e~~~dsci~VD~GS 139 (330)
T COG1548 75 GVEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW---------VATA-RFLA--EEIKDSCILVDMGS 139 (330)
T ss_pred HHHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh---------HHHH-HHHH--HhcCCceEEEecCC
Confidence 35667777777776654 788888888763 2222333211 110 0111 1101 11356789999999
Q ss_pred cceEEEEEEE
Q 010543 235 GTFDVSILTI 244 (507)
Q Consensus 235 gt~dvsv~~~ 244 (507)
.|+|+.-+.-
T Consensus 140 TTtDIIPi~~ 149 (330)
T COG1548 140 TTTDIIPIKD 149 (330)
T ss_pred cccceEeecc
Confidence 9999887764
No 111
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=91.08 E-value=17 Score=36.03 Aligned_cols=41 Identities=20% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcC
Q 010543 342 FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 342 ~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~ 387 (507)
++.+.+.+..+++.. .++.++++||-+...+||+++++.+.
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 334444444444442 36789999999999999999999873
No 112
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=91.08 E-value=12 Score=35.35 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC
Q 010543 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 375 (507)
Q Consensus 330 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~ 375 (507)
-++.-+.+-.-++......|+..+++.......--.|+++||.+..
T Consensus 174 g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 174 GKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 3444555556666666666666665532111112369999999875
No 113
>PRK09604 UGMP family protein; Validated
Probab=89.88 E-value=22 Score=35.26 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcC--CCCCCCCC---CcchhhhhhHHHhhhhhc
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~--~~~v~~~~---~p~~ava~GAa~~a~~~~ 413 (507)
.++.|+|+||.++..++++.|.+.+. +.++..+. .-|.+++.|++-+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 47789999999999999999998873 23333332 236678888875443333
No 114
>PTZ00297 pantothenate kinase; Provisional
Probab=89.78 E-value=24 Score=42.18 Aligned_cols=74 Identities=12% Similarity=0.067 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-CCCHHHHHHHHhhc-----CCCCCCCCCCcchhhhhhHHHh
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAVQ 408 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~-s~~p~l~~~l~~~~-----~~~~v~~~~~p~~ava~GAa~~ 408 (507)
+++++.++.-|.+-|-..-- ..-...+++.|+++|++ ...|..++.|.... ++.+.....+..+.-|.||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 55666666666665544211 01123558999999994 66888888876654 2334555567778899999875
Q ss_pred h
Q 010543 409 G 409 (507)
Q Consensus 409 a 409 (507)
.
T Consensus 1444 ~ 1444 (1452)
T PTZ00297 1444 D 1444 (1452)
T ss_pred C
Confidence 4
No 115
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=89.75 E-value=20 Score=34.64 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCC------CCCCCCCcchhhhhhHHHhhh
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQGG 410 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~------~v~~~~~p~~ava~GAa~~a~ 410 (507)
+++.|++.|+.+..+.+.+.+++.+... ++......+.+.+.||+..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 3678999888877776667777665321 122223346778999998763
No 116
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=89.70 E-value=11 Score=35.74 Aligned_cols=48 Identities=29% Similarity=0.285 Sum_probs=36.8
Q ss_pred cCCCCeEEEEcCCCCCHHHHHHHHhhcC---CCCCCCCCCcchhhhhhHHH
Q 010543 360 KNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 360 ~~~i~~V~lvGG~s~~p~l~~~l~~~~~---~~~v~~~~~p~~ava~GAa~ 407 (507)
+..+|.|+|+||.++...+-++|.+... ..-+.-..|-.+|.|.||..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4569999999999999999999988762 12334445667899999863
No 117
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=89.69 E-value=18 Score=34.07 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC
Q 010543 331 RARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 375 (507)
Q Consensus 331 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~ 375 (507)
++..+.+...++.....+|+..+++....-..-..++++||.+++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh
Confidence 456667777777777777777776643222234689999998753
No 118
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=89.66 E-value=0.93 Score=45.27 Aligned_cols=76 Identities=24% Similarity=0.252 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCC----CCCcchhhhhhHHHhh
Q 010543 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQG 409 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~----~~~p~~ava~GAa~~a 409 (507)
-++++.-+.+-+.+.|.+.+++... +++.|+++||+++.+.|.+.|++.+++.+|.. ..+++.-=|.+-|+.|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 3445555555556666666666432 27899999999999999999999997655432 2344433344445566
Q ss_pred hhh
Q 010543 410 GIL 412 (507)
Q Consensus 410 ~~~ 412 (507)
...
T Consensus 336 ~~~ 338 (364)
T PF03702_consen 336 YRR 338 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 119
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=89.55 E-value=11 Score=37.88 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=52.7
Q ss_pred eecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCcCCCCe-EEEEcCCCCCHHHHHHHHhhcCCCCCCC-CCCcchhhhhh
Q 010543 328 PLTRARFEELNNDLFRKT-MGPVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK-GVNPDEAVAYG 404 (507)
Q Consensus 328 ~itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~~~~i~~-V~lvGG~s~~p~l~~~l~~~~~~~~v~~-~~~p~~ava~G 404 (507)
.-.+.++-..++..++++ ++.++..+++.+ ++. +.|.||.+..-..-..|.+..+-.++.. +.-.|.-+|.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 346667766666666555 455556666655 445 9999999999888888888742233433 33457789999
Q ss_pred HHHhhhhhc
Q 010543 405 AAVQGGILS 413 (507)
Q Consensus 405 Aa~~a~~~~ 413 (507)
||+++....
T Consensus 207 aA~~~~~~~ 215 (360)
T PF02543_consen 207 AALYAWHEL 215 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999997543
No 120
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=23 Score=34.76 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=111.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHh---C---CCcCcEEEEeCCCCCHHHHHHH---HHHHHHcCCceeEeechhhHHHHHhh
Q 010543 147 FSPEEISAMILTKMKETAEAFL---G---KKIKDAVVTVPAYFNDAQRQAT---KDAGIIAGLNVARIINEPTAAAIAYG 217 (507)
Q Consensus 147 ~~~~~l~~~~L~~l~~~~~~~~---~---~~~~~~viTVP~~~~~~qr~~l---~~aa~~agl~~~~li~Ep~Aaa~~~~ 217 (507)
+-|+..+..-.+.+....++.+ + .+++-+.+|.=......=+--. +..+...+.+.+ -++-..+-.++..
T Consensus 41 VvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli-~VnH~~gHi~a~~ 119 (342)
T COG0533 41 VVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLI-PVNHLEGHIEAAR 119 (342)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCEe-ecchHHHHHHHHH
Confidence 3566666666666555554443 2 2455566666545443322211 223333444432 3444555444433
Q ss_pred cccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCH--------
Q 010543 218 LDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDK-------- 289 (507)
Q Consensus 218 ~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~-------- 289 (507)
+.... ...++..=+-||+|.+..++- -+.++++...-|. .-|+.||.-- +..|...+..+
T Consensus 120 l~~~~-~~p~v~LlVSGGHTqli~~~~-~g~y~ilGeTlDd-A~Gea~DKvA---------R~lGL~yPGGp~Ie~lA~~ 187 (342)
T COG0533 120 LETGL-AFPPVALLVSGGHTQLIAVRG-IGRYEVLGETLDD-AAGEAFDKVA---------RLLGLGYPGGPAIEKLAKK 187 (342)
T ss_pred hccCC-CCCcEEEEEecCceEEEEEcC-CCcEEEEeeechh-hhhHHHHHHH---------HHhCCCCCCcHHHHHHHhc
Confidence 33321 333444444666777655542 2668888776644 3345555432 22233333322
Q ss_pred -------------------HHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHHHHHHHHH----HHHHHH
Q 010543 290 -------------------RAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND----LFRKTM 346 (507)
Q Consensus 290 -------------------~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~e~~~~~----~~~~i~ 346 (507)
-.+.-|+.++...-+.+... ..+..++.++++.. .++-+.
T Consensus 188 G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~-----------------~~~~~~d~~dia~sfQ~av~~~L~ 250 (342)
T COG0533 188 GDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQK-----------------EELNEEDKEDIAASFQEAVFDMLV 250 (342)
T ss_pred CCCCceeCCccccCCCCcceehHhHHHHHHHHHHhcccc-----------------cccchhhHHHHHHHHHHHHHHHHH
Confidence 11122222222211111110 11234445555554 445555
Q ss_pred HHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcC--CCCCCCCCCcchhhhhhHHH
Q 010543 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~--~~~v~~~~~p~~ava~GAa~ 407 (507)
+..+++++..+ .+.++++||-+....||+++++.+. +.++. ..+++.|.--||.+
T Consensus 251 ~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~-~p~~~lCtDNaaMI 307 (342)
T COG0533 251 EKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVY-IPPLELCTDNAAMI 307 (342)
T ss_pred HHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEE-cCChHhccchHHHH
Confidence 55666666644 5679999999999999999999873 22232 23455555555543
No 121
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=88.55 E-value=19 Score=34.87 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=56.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---echhhHHHHHhhcccCC-CceeEEEEEcCCcceEEEEEEEeCCe
Q 010543 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGV 248 (507)
Q Consensus 173 ~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~l---i~Ep~Aaa~~~~~~~~~-~~~~~lv~D~Gggt~dvsv~~~~~~~ 248 (507)
....+|-|.--.++.|+.+.+..-.. +++..+ +..-.|.+..|....-. ..-.=+|+|-|.|-+.+-.+. .+
T Consensus 107 h~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipva--Eg- 182 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVA--EG- 182 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEee--cc-
Confidence 45678999888888888887754322 222222 22222223333211111 233447999999998877665 22
Q ss_pred EEEEEEcCCCCCchHHHHHHHHHHH
Q 010543 249 FEVLSTNGDTHLGGEDFDQRVMEYF 273 (507)
Q Consensus 249 ~~v~~~~~~~~~GG~~id~~l~~~l 273 (507)
+-+.+.-...++.|++++.-+..++
T Consensus 183 yVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 183 YVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred eEEeeeeccccccCCchhHHHHHHh
Confidence 2233334557899999988776665
No 122
>PLN02666 5-oxoprolinase
Probab=88.45 E-value=7.6 Score=45.42 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhh
Q 010543 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a 409 (507)
....+.|.......++++.+. .++..||.+ |...-.|.+.++-.++..+.+|.-..|.|+++.-
T Consensus 469 ~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ad 532 (1275)
T PLN02666 469 EAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGLAD 532 (1275)
T ss_pred HHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhhh
Confidence 334445555555556665433 455555554 6788888999843347788899989999998744
No 123
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=87.44 E-value=2 Score=43.69 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-cCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcC
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~ 414 (507)
.+++..++.+.=...+.++..... +..++.+-+=||.+++.++.+...+.+ +.+|.++.+ .+..|.|||+.|..-.+
T Consensus 375 hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~G 452 (499)
T COG0554 375 HIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhhC
Confidence 444444444444444444332111 125888999999999999999999999 788888755 46799999999976665
Q ss_pred C
Q 010543 415 E 415 (507)
Q Consensus 415 ~ 415 (507)
.
T Consensus 453 ~ 453 (499)
T COG0554 453 F 453 (499)
T ss_pred c
Confidence 3
No 124
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=85.97 E-value=34 Score=33.00 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC-HHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhh
Q 010543 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI-PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~-p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~ 412 (507)
.++++....|...++... .......+.+.||.... +++.+..++.... +|...+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHh
Confidence 456666677777776643 22335679999999877 7888887777632 23555888999888654
No 125
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=7.3 Score=38.43 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=42.0
Q ss_pred CcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCC----CCCCcchhhhhhHHHhhhhh
Q 010543 359 EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN----KGVNPDEAVAYGAAVQGGIL 412 (507)
Q Consensus 359 ~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~----~~~~p~~ava~GAa~~a~~~ 412 (507)
...+.+..+++||+.+.|.+.+.|...+++..|. ...+++..=|.+-|+.+...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 4566789999999999999999999999765554 24566666677777777654
No 126
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=85.84 E-value=47 Score=36.28 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=18.2
Q ss_pred cCCcEEEEEcCccceEEEEEE
Q 010543 34 KLGTVIGIDLGTTYSCVGVYK 54 (507)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~ 54 (507)
....++|||+|.|++++++.+
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCEEEEEcCchhheeeeec
Confidence 345799999999999999985
No 127
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=85.67 E-value=37 Score=33.35 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCC--CCCCCCC---CcchhhhhhHH
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKGV---NPDEAVAYGAA 406 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~--~~v~~~~---~p~~ava~GAa 406 (507)
.++.|+|+||.++..++++.|.+.+.. .++..+. .-|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 467899999999999999999988732 2333222 23556777765
No 128
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=85.42 E-value=39 Score=33.09 Aligned_cols=93 Identities=22% Similarity=0.336 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHh--CCCcCcEEEEeCCCCCHHH------------HHHHHH-HHHHcCCceeEeechhhHH
Q 010543 148 SPEEISAMILTKMKETAEAFL--GKKIKDAVVTVPAYFNDAQ------------RQATKD-AGIIAGLNVARIINEPTAA 212 (507)
Q Consensus 148 ~~~~l~~~~L~~l~~~~~~~~--~~~~~~~viTVP~~~~~~q------------r~~l~~-aa~~agl~~~~li~Ep~Aa 212 (507)
++++++..+.+.+.+..++.- ..++..+.|++|...+... ...+.+ ..+..|++ +.+.++..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 455555555544444443321 1245566777776443210 111322 22344765 6789999999
Q ss_pred HHHhhcccC-CCceeEEEEEcCCcceEEEEE
Q 010543 213 AIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (507)
Q Consensus 213 a~~~~~~~~-~~~~~~lv~D~Gggt~dvsv~ 242 (507)
|++-..... ...++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 887544322 235678888888775 44444
No 129
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=84.99 E-value=57 Score=34.71 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=35.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhcC--CCCCCCCC---CcchhhhhhHHHhhhh
Q 010543 363 IDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGI 411 (507)
Q Consensus 363 i~~V~lvGG~s~~p~l~~~l~~~~~--~~~v~~~~---~p~~ava~GAa~~a~~ 411 (507)
++.|+|+||.+...++++.|.+.+. +.++..+. .-|.+++.|++.+...
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~ 299 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMY 299 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHH
Confidence 6789999999999999999996652 33444332 3357788888765443
No 130
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=9.5 Score=34.89 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=46.7
Q ss_pred ecHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCC-CCCCCCcchhhhhhHH
Q 010543 329 LTRARFE-ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKE-PNKGVNPDEAVAYGAA 406 (507)
Q Consensus 329 itr~~~e-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~-v~~~~~p~~ava~GAa 406 (507)
.+.+++- ++-+.++.-+++..++++..++ -+.|++|||-.....+|+++...+..+. .....|-..++-.|+.
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~M 299 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVM 299 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchH
Confidence 3444432 2333345555555666666644 4579999999999999999999885331 1222355566666765
Q ss_pred Hh
Q 010543 407 VQ 408 (507)
Q Consensus 407 ~~ 408 (507)
+.
T Consensus 300 IA 301 (336)
T KOG2708|consen 300 IA 301 (336)
T ss_pred HH
Confidence 43
No 131
>PLN02920 pantothenate kinase 1
Probab=83.45 E-value=20 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCCCcCCCCeEEEEcCCCCCH-HHHHHHHhh---c--CCCCCCCCCCcchhhhhhHH
Q 010543 334 FEELNNDLFRKTMGPVKKA-MEDAGLEKNQIDEIVLVGGSTRIP-KVQQLLKDY---F--DGKEPNKGVNPDEAVAYGAA 406 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~-l~~~~~~~~~i~~V~lvGG~s~~p-~l~~~l~~~---~--~~~~v~~~~~p~~ava~GAa 406 (507)
-|++++.++.-+.+.|-.. .-.+ ....++.|+++|.+.+.+ ..++.|... + .+.+.....+..+.-|.||.
T Consensus 270 ~eDia~SLL~mVs~nIgqiA~L~A--~~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAf 347 (398)
T PLN02920 270 PEDVARSLLRMISNNIGQISYLNA--LRFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAF 347 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHH
Confidence 3556666666555555432 1111 234588999999999998 666644332 2 23455666788899999998
Q ss_pred Hhhh
Q 010543 407 VQGG 410 (507)
Q Consensus 407 ~~a~ 410 (507)
+...
T Consensus 348 l~~~ 351 (398)
T PLN02920 348 MSYE 351 (398)
T ss_pred Hhcc
Confidence 7653
No 132
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=82.58 E-value=7.9 Score=37.21 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=39.3
Q ss_pred CCeEEEEcC--CCCCH-HHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcCC
Q 010543 363 IDEIVLVGG--STRIP-KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (507)
Q Consensus 363 i~~V~lvGG--~s~~p-~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~~ 415 (507)
...|+|+|- +++.| .+++.|++++ +.++.. ++. ...|.|+|+.|..+.+-
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 348999998 99999 9999999999 444433 232 78999999999877553
No 133
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.37 E-value=2 Score=46.53 Aligned_cols=41 Identities=27% Similarity=0.462 Sum_probs=29.3
Q ss_pred eEeechhhHHHHHhhcc-cCCCceeEEEEEcCCcceEEEEEEE
Q 010543 203 ARIINEPTAAAIAYGLD-KKGGEKNILVFDLGGGTFDVSILTI 244 (507)
Q Consensus 203 ~~li~Ep~Aaa~~~~~~-~~~~~~~~lv~D~Gggt~dvsv~~~ 244 (507)
..+.+-|.|..+..... ....+ +++++|+||.|||++++.-
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIID 297 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeec
Confidence 34667787776665443 22223 6999999999999999883
No 134
>PF13941 MutL: MutL protein
Probab=79.93 E-value=31 Score=35.65 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=32.1
Q ss_pred EEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCch-HHHHHHHHHHH
Q 010543 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG-EDFDQRVMEYF 273 (507)
Q Consensus 227 ~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG-~~id~~l~~~l 273 (507)
+|++|||+.+|-++++....+..++++......-=. .|+..-+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 799999999999999997667777765544332112 36666555543
No 135
>PRK00976 hypothetical protein; Provisional
Probab=78.98 E-value=17 Score=35.60 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCCCH--HHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhhhhhcC
Q 010543 362 QIDEIVLVGGSTRIP--KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p--~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a~~~~~ 414 (507)
+++.|+|-||-++.+ .+.+.+++.+. .. ...-...+-++|||+.+....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-cc--ccccCCchHHHHHHHHHHHHhC
Confidence 478899999999998 78999988873 22 2223457899999998876543
No 136
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=78.75 E-value=2 Score=40.52 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=17.0
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
+++|||+|||++++++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 4799999999999999883
No 137
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=78.30 E-value=8.2 Score=27.38 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010543 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (507)
Q Consensus 174 ~~viTVP~~~~~~qr~~l~~aa~~agl~~ 202 (507)
...++.|+.++..+|..+.+.|...|+..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67889999999999999999999999865
No 138
>PRK03011 butyrate kinase; Provisional
Probab=78.14 E-value=8.3 Score=38.62 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCC---CCCCCCCCcchhhhhhHHHh
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG---KEPNKGVNPDEAVAYGAAVQ 408 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~---~~v~~~~~p~~ava~GAa~~ 408 (507)
+++.|++.||.+..+.+.+.|++.+.. ..+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 589999999999999999999887632 23444556668999998753
No 139
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=78.06 E-value=74 Score=31.35 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 363 IDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 363 i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
++.|+|+||.+...++.+.|.+.+
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l 266 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMA 266 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 678999999999999999999965
No 140
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=77.84 E-value=24 Score=34.57 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=19.8
Q ss_pred ccCCcEEEEEcCccceEEEEEEC
Q 010543 33 TKLGTVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~~ 55 (507)
.....++|||+|.|++.+++.+.
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC
Confidence 34678999999999999999874
No 141
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=76.21 E-value=2.6 Score=33.23 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.7
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
.++|||+|.|++++|+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4799999999999999863
No 142
>PTZ00107 hexokinase; Provisional
Probab=75.42 E-value=1.1e+02 Score=31.93 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeEeechhhHHHHHhhcccC-CCceeEEEEEcCCcceEEEE
Q 010543 180 PAYFNDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSI 241 (507)
Q Consensus 180 P~~~~~~qr~~l~~aa~~agl~--~~~li~Ep~Aaa~~~~~~~~-~~~~~~lv~D~Gggt~dvsv 241 (507)
|..-...-.+.+++|...-|++ ++.++++.+|..++..+... ..+...+-+=+|-||=-+.+
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~ 253 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYF 253 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceee
Confidence 4444455678888888887774 56789999998887765541 11223333334555544333
No 143
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.65 E-value=3.5 Score=34.92 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.5
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010543 36 GTVIGIDLGTTYSCVGVYKNG 56 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (507)
+.++|||+|+..+.+|+.++.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 368999999999999999866
No 144
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=74.36 E-value=4.5 Score=44.41 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcC--CCCCCCCC---CcchhhhhhHHHhhh
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGG 410 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~--~~~v~~~~---~p~~ava~GAa~~a~ 410 (507)
.++.|+|+||.++..++++.+.+.+. +.++..+. --|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 47789999999999999999998773 23343332 236788999887763
No 145
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=74.23 E-value=12 Score=38.12 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHH
Q 010543 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 380 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~ 380 (507)
.+++-+.+++.+.+++.+.+.+++..+++|..+.++|-++..-.+..
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllG 101 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLG 101 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcC
Confidence 45555667788888999999999999999999999998766555444
No 146
>PLN02362 hexokinase
Probab=73.03 E-value=44 Score=35.20 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHcCC--ceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEE
Q 010543 184 NDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSI 241 (507)
Q Consensus 184 ~~~qr~~l~~aa~~agl--~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv 241 (507)
...-.+.+++|...-|+ ++..++++.++..++..+.. ++..+-+=+|-||=-+.+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~---~~~~iG~IlGTGtNacY~ 260 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD---PDTVAAVIIGTGTNACYL 260 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC---CCceEEEEEECCccceEe
Confidence 34567888888888886 45678999999888765442 223344445665544443
No 147
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=72.69 E-value=39 Score=34.27 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.0
Q ss_pred ccCCcEEEEEcCccceEEEEEE
Q 010543 33 TKLGTVIGIDLGTTYSCVGVYK 54 (507)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~ 54 (507)
.+...+++||||.||.+++...
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEE
Confidence 4567899999999999999865
No 148
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=72.07 E-value=43 Score=31.53 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=52.5
Q ss_pred CCcCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccC-CCceeEEEEEcCCcceEEEEEEEeC
Q 010543 170 KKIKDAVV--TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDN 246 (507)
Q Consensus 170 ~~~~~~vi--TVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lv~D~Gggt~dvsv~~~~~ 246 (507)
..+..++. .+|.+|+.. +++++.+...|.+. .+.+.-.||.+....... .....++++|+|-|+|-.++++ +
T Consensus 112 ~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~--~ 186 (254)
T PF08735_consen 112 GRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK--D 186 (254)
T ss_pred CCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe--C
Confidence 34456666 778775532 24444445555554 344444444444433222 2467899999999999988883 4
Q ss_pred CeEEEEEEcCCCCCchHHHHHHHH
Q 010543 247 GVFEVLSTNGDTHLGGEDFDQRVM 270 (507)
Q Consensus 247 ~~~~v~~~~~~~~~GG~~id~~l~ 270 (507)
+.+.=+....+..+-...+...+.
T Consensus 187 ~rI~GvfEHHT~~l~~~kL~~~l~ 210 (254)
T PF08735_consen 187 GRIYGVFEHHTGMLTPEKLEEYLE 210 (254)
T ss_pred CEEEEEEecccCCCCHHHHHHHHH
Confidence 443333233334455554444333
No 149
>PRK10331 L-fuculokinase; Provisional
Probab=71.49 E-value=3.7 Score=42.94 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.3
Q ss_pred cEEEEEcCccceEEEEEE-CCe
Q 010543 37 TVIGIDLGTTYSCVGVYK-NGH 57 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~-~g~ 57 (507)
.++|||+|||++++++++ +|+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc
Confidence 689999999999999987 453
No 150
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=70.56 E-value=3.8 Score=43.46 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=18.0
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010543 36 GTVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (507)
+.++|||+|||++++++++.
T Consensus 3 ~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred cEEEEEecCCCceEEEEECC
Confidence 48999999999999999873
No 151
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=70.37 E-value=18 Score=25.71 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=27.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010543 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (507)
Q Consensus 173 ~~~viTVP~~~~~~qr~~l~~aa~~agl~~ 202 (507)
....++.|+.++..+|..+.+.|+..|+..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 467789999999999999999999999975
No 152
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=68.58 E-value=6.8 Score=35.85 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCc---eeEeechhhHHHHHhhc
Q 010543 186 AQRQATKDAGIIAGLN---VARIINEPTAAAIAYGL 218 (507)
Q Consensus 186 ~qr~~l~~aa~~agl~---~~~li~Ep~Aaa~~~~~ 218 (507)
.-.+.+++|....|++ ++.++++.+|..++.++
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3467788888888886 46679999998887644
No 153
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=67.90 E-value=26 Score=35.21 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCcceEEEEEE
Q 010543 224 EKNILVFDLGGGTFDVSILT 243 (507)
Q Consensus 224 ~~~~lv~D~Gggt~dvsv~~ 243 (507)
...+.++|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 57899999999999998765
No 154
>PRK00047 glpK glycerol kinase; Provisional
Probab=67.53 E-value=4.8 Score=42.43 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.8
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010543 36 GTVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~ 55 (507)
..++|||+|||++++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 47999999999999999863
No 155
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=66.43 E-value=5.4 Score=42.12 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.4
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
.++|||+|||++++++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 7899999999999999874
No 156
>PLN02405 hexokinase
Probab=65.55 E-value=1.2e+02 Score=32.00 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHcCCc--eeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEE
Q 010543 184 NDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (507)
Q Consensus 184 ~~~qr~~l~~aa~~agl~--~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~ 243 (507)
...-.+.+++|.+.-|++ +..++++.++..++..+.. ++..+-+=+|-||=-+.+-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~---~~~~iG~IlGTGtNacY~E~ 262 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN---PDVVAAVILGTGTNAAYVER 262 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC---CCceEEEEEeCCeeeEEEee
Confidence 445678888898888875 4668999999888765543 23444444676665555443
No 157
>PRK13331 pantothenate kinase; Reviewed
Probab=65.41 E-value=8 Score=36.52 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=22.9
Q ss_pred hhccCCcEEEEEcCccceEEEEEECCe
Q 010543 31 EATKLGTVIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 31 ~~~~~~~viGID~GTt~s~va~~~~g~ 57 (507)
|+...+.++.||+|+|+++++++++++
T Consensus 2 ~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 2 MFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 455667899999999999999999764
No 158
>PRK15027 xylulokinase; Provisional
Probab=64.49 E-value=5.6 Score=41.80 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=16.8
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 3699999999999999874
No 159
>PLN02914 hexokinase
Probab=64.28 E-value=1.1e+02 Score=32.03 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHcCC--ceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEE
Q 010543 183 FNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (507)
Q Consensus 183 ~~~~qr~~l~~aa~~agl--~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~ 244 (507)
-...-.+.|++|.+.-|+ ++..++++.++..++..+.. ++..+-+=+|-||=-+.+-+.
T Consensus 203 ~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~---~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 203 AGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD---DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred cCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC---CCceEEEEEECCeeeEEEeec
Confidence 344567888888888776 45678999999887765543 233444445666655555443
No 160
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=64.28 E-value=7.7 Score=32.99 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.9
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 010543 35 LGTVIGIDLGTTYSCVGVYKNG 56 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~g 56 (507)
.+.++|||+|+..+.+|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 3469999999999999998764
No 161
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=63.74 E-value=6.4 Score=41.11 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=17.2
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
.++|||+|||++++++.+.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999874
No 162
>PRK04123 ribulokinase; Provisional
Probab=62.87 E-value=7.5 Score=41.57 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.5
Q ss_pred CcEEEEEcCccceEEEEEE
Q 010543 36 GTVIGIDLGTTYSCVGVYK 54 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~ 54 (507)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4799999999999999998
No 163
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=62.66 E-value=5.7 Score=38.89 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCcceEEEEEE
Q 010543 224 EKNILVFDLGGGTFDVSILT 243 (507)
Q Consensus 224 ~~~~lv~D~Gggt~dvsv~~ 243 (507)
-.+++++|+||.|+|++++.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 34589999999999999987
No 164
>PLN02295 glycerol kinase
Probab=62.33 E-value=6.5 Score=41.62 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.7
Q ss_pred cEEEEEcCccceEEEEEE-CCe
Q 010543 37 TVIGIDLGTTYSCVGVYK-NGH 57 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~-~g~ 57 (507)
.++|||+|||++++++++ +|+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~ 22 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR 22 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC
Confidence 379999999999999987 443
No 165
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=62.16 E-value=20 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=42.2
Q ss_pred CcceEEeecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHH
Q 010543 322 GIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLK 383 (507)
Q Consensus 322 ~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~ 383 (507)
+..-.+.||+.|++++. -....+..-++-++++++++.+++++|+|.||++..=-..+.++
T Consensus 288 ~~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34557889999998763 33445667788889999999999999999999998766666654
No 166
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=61.96 E-value=8.4 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.7
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010543 36 GTVIGIDLGTTYSCVGVYKNG 56 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (507)
+.++|+|+||-.+.+|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 478999999999999998765
No 167
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=61.78 E-value=7.7 Score=41.36 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=17.0
Q ss_pred cEEEEEcCccceEEEEEE
Q 010543 37 TVIGIDLGTTYSCVGVYK 54 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~ 54 (507)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 168
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=60.38 E-value=29 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=22.8
Q ss_pred CceeEEEEEcCCcceEEEEEEEeCC
Q 010543 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (507)
Q Consensus 223 ~~~~~lv~D~Gggt~dvsv~~~~~~ 247 (507)
+...+|++|+||.++-+..+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 5678999999999999999999876
No 169
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=58.33 E-value=1.5e+02 Score=30.77 Aligned_cols=51 Identities=6% Similarity=0.073 Sum_probs=34.4
Q ss_pred EEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhc
Q 010543 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 281 (507)
Q Consensus 230 ~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~ 281 (507)
+|+|..+|-++.|..++..+...+.......= .|+..-|.+...++++++.
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~~~~ 51 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLNEDL 51 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHHHhc
Confidence 59999999999998887776666655542222 3666665555566665554
No 170
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=57.44 E-value=8.6 Score=40.50 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.1
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
.++|||+|||++++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 5899999999999999863
No 171
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=57.34 E-value=53 Score=23.32 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=26.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010543 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (507)
Q Consensus 174 ~~viTVP~~~~~~qr~~l~~aa~~agl~~ 202 (507)
...++.|+.++..||..+.+.|+..|+..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36789999999999999999999999865
No 172
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=57.03 E-value=9.4 Score=40.36 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=16.8
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010543 37 TVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~ 55 (507)
+++|||+|||++++++.+.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999864
No 173
>PRK07058 acetate kinase; Provisional
Probab=56.44 E-value=1e+02 Score=31.21 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
.++-.+.++.+.|-...... ..+|.|+++||-+ ..+.+++.+.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44445556666665555543 2499999999999 99999999999873
No 174
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=56.35 E-value=26 Score=33.44 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=41.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCC-----------CceeEEEEEcCCcceEE
Q 010543 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFDV 239 (507)
Q Consensus 173 ~~~viTVP~~~~~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~-----------~~~~~lv~D~Gggt~dv 239 (507)
.++|+|--..=-..||..=|. .-..|++..+++-+|+-+|+.|++...- +++.-|-+=+-+|||..
T Consensus 251 ~H~VLswt~~D~N~qk~LNrk-llk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNA 327 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNRK-LLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNA 327 (403)
T ss_pred CceEEEeeccChHHHHHHHHH-HHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcch
Confidence 467776542222344443344 4456799999999999999999876431 44555555556666553
No 175
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=56.25 E-value=18 Score=31.35 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEE
Q 010543 38 VIGIDLGTTYSCVGVYK--NGHVEII 61 (507)
Q Consensus 38 viGID~GTt~s~va~~~--~g~~~ii 61 (507)
++|||.|++++..|+.+ ++.+.++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEE
Confidence 79999999999999975 3444443
No 176
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=2.7e+02 Score=29.40 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=50.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHH-HHHHhhcCCCCCCC-CCCcchhhhhhHH
Q 010543 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ-QLLKDYFDGKEPNK-GVNPDEAVAYGAA 406 (507)
Q Consensus 329 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~-~~l~~~~~~~~v~~-~~~p~~ava~GAa 406 (507)
....++...++..+++++..+..-+.+... ...+.+.||.+..--.. +.+.+-+ ...+.. +.-.|.-.|.|||
T Consensus 256 ~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 256 ERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHH
Confidence 344556666666666666666655554321 56899999999876666 5555544 334443 3344567999999
Q ss_pred Hhhhhh
Q 010543 407 VQGGIL 412 (507)
Q Consensus 407 ~~a~~~ 412 (507)
+++...
T Consensus 331 l~~~~~ 336 (555)
T COG2192 331 LAVKRE 336 (555)
T ss_pred HHHHHH
Confidence 988654
No 177
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.30 E-value=94 Score=29.37 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=42.0
Q ss_pred EeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHH
Q 010543 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (507)
Q Consensus 204 ~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (507)
.+++.-.||+..+.++.. ....+|+|+|-|++..+++.- +.+.-+.......+.-+.+-..|.++..
T Consensus 208 v~mDskfaav~gal~dpa--a~palvVd~GngHttaalvde--dRI~gv~EHHT~~Lspekled~I~rf~~ 274 (342)
T COG4012 208 VAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVDE--DRIVGVYEHHTIRLSPEKLEDQIIRFVE 274 (342)
T ss_pred EEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEecC--CeEEEEeecccccCCHHHHHHHHHHHHh
Confidence 455555666665555443 458899999999999998874 3443333344455666666555555543
No 178
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=54.43 E-value=36 Score=24.22 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=26.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010543 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (507)
Q Consensus 173 ~~~viTVP~~~~~~qr~~l~~aa~~agl~~ 202 (507)
..-.++.|+.+++.+|..+...|...|+..
T Consensus 16 ~~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 16 MRDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 356788899999999999999999999865
No 179
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=53.33 E-value=12 Score=39.97 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q 010543 38 VIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 38 viGID~GTt~s~va~~~~ 55 (507)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 689999999999999863
No 180
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=53.24 E-value=41 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010543 159 KMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (507)
Q Consensus 159 ~l~~~~~~~~~~~~~~~viTVP~~~~~~qr~~l~~aa~~agl~~ 202 (507)
.+.+..+.++... .-.++.|+ .+..+|..+.+.|...|+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444444444333 45679998 89999999999999998864
No 181
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.20 E-value=1.3e+02 Score=29.18 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCC--------CCCCCCCcchhhhhhHHHhh
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK--------EPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~--------~v~~~~~p~~ava~GAa~~a 409 (507)
+++.|+|-|+.+..+.+.+.+++.+... ++......+.+.++||+..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 4678888887777676667776665211 12223344577899999765
No 182
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.76 E-value=49 Score=32.17 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHcCCceeEeechhhHHHHHhhcccC-CCceeEEEEEcCCc
Q 010543 196 IIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGG 235 (507)
Q Consensus 196 ~~agl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lv~D~Ggg 235 (507)
+..|++ +.+.++..|+|++-..... ...++++.+.+|.|
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 345775 6789999998887533322 23467888888764
No 183
>PRK13329 pantothenate kinase; Reviewed
Probab=52.69 E-value=2.1e+02 Score=27.06 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhh
Q 010543 330 TRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 330 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a 409 (507)
.++.-+.+..-++......|+..+++.......--.|+++||.+. .+...++ ..... +|+ -|-.|....+
T Consensus 175 g~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~~~vilTGGda~--~l~~~l~-----~~~~~--~~~-LvL~GL~~i~ 244 (249)
T PRK13329 175 PTNTSDALTSGGTQAIAGAVERMFRHLAQHCGAEPECLLTGGAAW--KLAPSLT-----VPFEL--VDN-LVLDGLLVIA 244 (249)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HHHhhcC-----CCCEE--CCC-cHHHHHHHHH
Confidence 344555666667777777777666653212111237999999965 3333332 22222 222 3778887665
Q ss_pred h
Q 010543 410 G 410 (507)
Q Consensus 410 ~ 410 (507)
.
T Consensus 245 ~ 245 (249)
T PRK13329 245 A 245 (249)
T ss_pred h
Confidence 4
No 184
>PLN02669 xylulokinase
Probab=52.33 E-value=13 Score=39.86 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.9
Q ss_pred cCCcEEEEEcCccceEEEEEEC
Q 010543 34 KLGTVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~~ 55 (507)
...+++|||+||+.+++++.+.
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d~ 27 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLDS 27 (556)
T ss_pred CCCeEEEEecccCCeEEEEEcC
Confidence 3568999999999999999873
No 185
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=51.01 E-value=60 Score=33.02 Aligned_cols=29 Identities=28% Similarity=0.724 Sum_probs=24.1
Q ss_pred CceeEEEEEcCCcceEEEEEEEe-CCeEEE
Q 010543 223 GEKNILVFDLGGGTFDVSILTID-NGVFEV 251 (507)
Q Consensus 223 ~~~~~lv~D~Gggt~dvsv~~~~-~~~~~v 251 (507)
+...+|++|+||..+-++.+++. ++.+++
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 67889999999999999999997 444433
No 186
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=48.69 E-value=52 Score=32.89 Aligned_cols=68 Identities=19% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCC---CCCCCCCcchhhhhhHHH
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK---EPNKGVNPDEAVAYGAAV 407 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~---~v~~~~~p~~ava~GAa~ 407 (507)
+++....++...|-..+...+ .+++.|++.||-+..+.+.+.+++.+... .+.-..+-.++.|.||..
T Consensus 271 a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 271 ILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 333444444444444443321 24789999999999999999998877322 223333445778888853
No 187
>PRK13326 pantothenate kinase; Reviewed
Probab=48.59 E-value=21 Score=34.08 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.3
Q ss_pred CcEEEEEcCccceEEEEEECCe
Q 010543 36 GTVIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g~ 57 (507)
+..+.||+|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 3579999999999999999765
No 188
>PLN02377 3-ketoacyl-CoA synthase
Probab=47.82 E-value=1.1e+02 Score=32.19 Aligned_cols=55 Identities=7% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCCCCHHHHHHHHhhcC
Q 010543 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 333 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~l-vGG~s~~p~l~~~l~~~~~ 387 (507)
.++...++..+-+.+.++++|+++++++++|+.|++ +.+....|.+..+|.+.++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 455555666666788889999999999999999987 3444468999999999994
No 189
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=3.2e+02 Score=27.20 Aligned_cols=221 Identities=16% Similarity=0.152 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC---cCcEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeEeechhhHHHHHhhcccCCC
Q 010543 149 PEEISAMILTKMKETAEAFLGKK---IKDAVVTVPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGG 223 (507)
Q Consensus 149 ~~~l~~~~L~~l~~~~~~~~~~~---~~~~viTVP~~~~~~qr~~l~~aa~~agl--~~~~li~Ep~Aaa~~~~~~~~~~ 223 (507)
+.+.=..-+..+.+.+-...+.. .+-+.+|+-....-.-+.-++-|-..|+- ...-=++--+|-|+...+.....
T Consensus 78 a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v 157 (405)
T KOG2707|consen 78 AQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSV 157 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCc
Confidence 34444556666666665444433 34466777666665555445544444432 11223666777777776655445
Q ss_pred ceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Q 010543 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAK 303 (507)
Q Consensus 224 ~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 303 (507)
.-.++.+=+-||++-+.+.+- -+.++++...-|. .=|+.+|..-.++ +...... .. ...+++-
T Consensus 158 ~FPFl~lLvSGGH~llvla~~-~~~~~llg~TvDi-ApGe~lDK~ar~L---------gl~~~~e--~~----~~~g~ai 220 (405)
T KOG2707|consen 158 RFPFLALLVSGGHTLLVLANG-VGDHELLGQTVDI-APGEALDKCARRL---------GLLGHPE--DA----RSGGKAI 220 (405)
T ss_pred CCceeeEeeeCCceEEEEecc-ccceeeeeccccc-chHHHHHHHHHHh---------cCCCCcc--ch----hhhhhHH
Confidence 667777778888888777663 2345566554433 3356666543322 3222111 00 1112222
Q ss_pred HHhccCcEEEEE--EeeccC---CcceEE--------------------eecHHHHH-HHHHHHHHHHHHHHHHHHHHcC
Q 010543 304 RALSSQHQVRVE--IESLFD---GIDFSE--------------------PLTRARFE-ELNNDLFRKTMGPVKKAMEDAG 357 (507)
Q Consensus 304 ~~ls~~~~~~~~--i~~~~~---~~~~~~--------------------~itr~~~e-~~~~~~~~~i~~~i~~~l~~~~ 357 (507)
+.+....+.... ++.... .-++++ ...+.+|- .+-+..+.-+.+..+.+++.+.
T Consensus 221 e~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~ 300 (405)
T KOG2707|consen 221 EHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLL 300 (405)
T ss_pred HHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222111111111 110000 001111 11233332 2222344555555566666665
Q ss_pred CCcCCCCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 358 LEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 358 ~~~~~i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
+.++.+.+.++.||-+...+++.+|+...
T Consensus 301 l~~~~~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 301 LQPKNVKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred hcccCCceEEEcCCccchHHHHHHHHHHH
Confidence 66777889999999999999999998875
No 190
>PRK13320 pantothenate kinase; Reviewed
Probab=45.41 E-value=27 Score=32.95 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.8
Q ss_pred cEEEEEcCccceEEEEEECCe
Q 010543 37 TVIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 37 ~viGID~GTt~s~va~~~~g~ 57 (507)
.++.||+|+|+++.+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 489999999999999998764
No 191
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=45.31 E-value=3.5e+02 Score=28.26 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCc---eeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEEeC
Q 010543 178 TVPAYFNDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDN 246 (507)
Q Consensus 178 TVP~~~~~~qr~~l~~aa~~agl~---~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~~~ 246 (507)
.++......-.+.+++|.+.-|+. ++.++++.++..++..+.. +++++-+=+|.||=-+.+.+..+
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~---~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED---PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC---CCcEEEEEECCCccceeeeeccc
Confidence 344444556678899999998886 5667999988877665443 35666677788887777666543
No 192
>PLN02596 hexokinase-like
Probab=45.07 E-value=3.9e+02 Score=28.08 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHcCC--ceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEEE
Q 010543 184 NDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (507)
Q Consensus 184 ~~~qr~~l~~aa~~agl--~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~~ 244 (507)
...-.+.+++|....|+ +++.++++.++..++..+... +..+-+=+|-||=-+.+-+.
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~---~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK---DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC---CeEEEEEEecccceEEEEEc
Confidence 34556667788777776 456789999998887765532 33333446777665555544
No 193
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=41.79 E-value=9.8 Score=39.05 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhhcCC-----CC------C---CCCCCcchhhhhhHHHhhhhhc
Q 010543 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDG-----KE------P---NKGVNPDEAVAYGAAVQGGILS 413 (507)
Q Consensus 361 ~~i~~V~lvGG~s~~p~l~~~l~~~~~~-----~~------v---~~~~~p~~ava~GAa~~a~~~~ 413 (507)
+-.+.|++|||+...|++...|++...+ .. | -+..||...+=+|||+++..-.
T Consensus 525 Kl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 525 KLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 3467899999999999999999987632 21 1 2335788888899999986543
No 194
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=41.61 E-value=17 Score=30.51 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.6
Q ss_pred EEEEcCccceEEEEEECC
Q 010543 39 IGIDLGTTYSCVGVYKNG 56 (507)
Q Consensus 39 iGID~GTt~s~va~~~~g 56 (507)
+|||+|+..+.+|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 589999999999988653
No 195
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=41.57 E-value=48 Score=28.55 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEE
Q 010543 38 VIGIDLGTTYSCVGVYK--NGHVEII 61 (507)
Q Consensus 38 viGID~GTt~s~va~~~--~g~~~ii 61 (507)
|+|||-|++++..|+.+ ++.+..+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 68999999999999975 4455554
No 196
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=41.13 E-value=26 Score=30.80 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.0
Q ss_pred CcEEEEEcCccceEEEEEE
Q 010543 36 GTVIGIDLGTTYSCVGVYK 54 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~ 54 (507)
+.++|||-|++++..++.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4799999999999999875
No 197
>PLN03173 chalcone synthase; Provisional
Probab=39.71 E-value=1.2e+02 Score=30.76 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
-..+...+-..+..+++|+++++++.+|++|+.+..+. ..|.+.-.|.+.++
T Consensus 97 ~~~~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 97 MVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 33344555567778899999999999999998876554 58999999999983
No 198
>PLN02854 3-ketoacyl-CoA synthase
Probab=39.18 E-value=78 Score=33.44 Aligned_cols=54 Identities=11% Similarity=0.282 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEE-EcCCCCCHHHHHHHHhhcC
Q 010543 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~l-vGG~s~~p~l~~~l~~~~~ 387 (507)
+++.-++.-.-+...++++|+++++++++|+.|++ +.+....|.+..+|.+.++
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 44444444445677788899999999999999987 3344457999999999994
No 199
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=39.12 E-value=41 Score=35.17 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=18.2
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 010543 35 LGTVIGIDLGTTYSCVGVYK 54 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~ 54 (507)
...++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 46899999999999999987
No 200
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=38.20 E-value=86 Score=30.24 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCeEE-EEcCCCCCHHHHHHHHhhcC
Q 010543 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIV-LVGGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~V~-lvGG~s~~p~l~~~l~~~~~ 387 (507)
++.-.-+...++++|+++++++++|+.++ -+..++-.|.+-.+|.+.|+
T Consensus 81 ~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 81 EEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 33333457788899999999999999754 46677889999999999994
No 201
>PLN03170 chalcone synthase; Provisional
Probab=37.90 E-value=1.2e+02 Score=30.99 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 332 ARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 332 ~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
+..+...+...+-..+..+++|+++++++++|++|+++-.+. ..|.+.-.|.+.++
T Consensus 97 ~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 97 ARQDIVVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 333444445556667788999999999999999988766544 69999999999994
No 202
>PLN03172 chalcone synthase family protein; Provisional
Probab=37.69 E-value=1.3e+02 Score=30.52 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 332 ARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 332 ~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
+..+...+...+-..+..+++|+++++++++|++|+++-.+. ..|.+.-.|.+.++
T Consensus 93 ~r~~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 93 ARQDMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 334444445556667778999999999999999998766554 69999999999983
No 203
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=37.45 E-value=3.4e+02 Score=27.35 Aligned_cols=96 Identities=19% Similarity=0.378 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHH---------hhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEEeecHHH
Q 010543 263 EDFDQRVMEYFIKLIK---------KKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRAR 333 (507)
Q Consensus 263 ~~id~~l~~~l~~~~~---------~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~ 333 (507)
+.+|+.|.+++.+++. ++.+.++.+..+....+.+..+.+++ ..+..+.
T Consensus 13 D~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~----------------------~~l~~~~ 70 (374)
T PRK11199 13 DEVDKQLLELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEA----------------------LGVPPDL 70 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHh----------------------CCCCHHH
Confidence 5789999999887653 33444554444444444333333322 1134445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--cCCCCeEEEEcCCCCCH-HHHHHHHh
Q 010543 334 FEELNNDLFRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIP-KVQQLLKD 384 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~V~lvGG~s~~p-~l~~~l~~ 384 (507)
++.+++.+++.... .-.+.++. ......|.++||.+.+- .+...+++
T Consensus 71 ~~~i~~~i~~~s~~----~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 71 IEDVLRRVMRESYS----SENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred HHHHHHHHHHHHHH----HhHHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 55555555544432 11222222 22457899999766664 45555554
No 204
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=36.00 E-value=2.4e+02 Score=29.51 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=35.4
Q ss_pred eeEEEEEcCCcceEEEEEEEeCCeE-EEEEEcCCCCCchHHHHHHHHHH
Q 010543 225 KNILVFDLGGGTFDVSILTIDNGVF-EVLSTNGDTHLGGEDFDQRVMEY 272 (507)
Q Consensus 225 ~~~lv~D~Gggt~dvsv~~~~~~~~-~v~~~~~~~~~GG~~id~~l~~~ 272 (507)
.+=+-+|+|.+++-..++.+..+.. ....+.....-||+++|.+....
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~i 212 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFAI 212 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHHH
Confidence 3447899999999999999887754 33444554567999999876543
No 205
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=35.10 E-value=49 Score=30.19 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.3
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 010543 38 VIGIDLGTTYSCVGVYKNGHV 58 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~~ 58 (507)
++-||+|+|+++.++++++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999988754
No 206
>PRK13324 pantothenate kinase; Reviewed
Probab=33.73 E-value=47 Score=31.56 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010543 38 VIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (507)
++.||+|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998654
No 207
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=33.21 E-value=1.5e+02 Score=30.22 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
.++-++.++.+.|-...... ...+|.|+++||-+ ..+.+++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34445556666665555543 12499999999999 99999999999874
No 208
>PLN03168 chalcone synthase; Provisional
Probab=32.65 E-value=1.7e+02 Score=29.75 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-CCCHHHHHHHHhhcC
Q 010543 331 RARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFD 387 (507)
Q Consensus 331 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~-s~~p~l~~~l~~~~~ 387 (507)
.+..+-..+...+-..+..+++|+++++++++|++|+++-.+ -.+|.+.-.|.+.++
T Consensus 91 ~~r~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 91 NVRHDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 344444445556666788899999999999999999876433 357999999999983
No 209
>PRK13322 pantothenate kinase; Reviewed
Probab=31.55 E-value=2.9e+02 Score=26.04 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHcCCceeEeechhhHHHHHhhcccCC----------------CceeEEEEEcCCcceEEEEEEEeCC
Q 010543 185 DAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKG----------------GEKNILVFDLGGGTFDVSILTIDNG 247 (507)
Q Consensus 185 ~~qr~~l~~aa-~~agl~~~~li~Ep~Aaa~~~~~~~~~----------------~~~~~lv~D~Gggt~dvsv~~~~~~ 247 (507)
....+.+++++ +..+.++..+-.++.+..+...+.... -+..++|+|+|. .+.+.++.-++.
T Consensus 59 ~~~~~~l~~~l~~~~~~~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~~~~lViD~GT-A~TiD~v~~~g~ 137 (246)
T PRK13322 59 EEETARLVAILEKRLGIPVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAKNACLVIDCGT-AVTIDLVDADGQ 137 (246)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcCCCEEEEEcCC-eeEEEEEcCCCc
Q ss_pred eEEEEEEcCCCCCchHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHhccCcEEEEEEeeccCCcceEE
Q 010543 248 VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSE 327 (507)
Q Consensus 248 ~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~ 327 (507)
.. .|-..-|=.-.-+.|.+. +-.++.......-..
T Consensus 138 ~~-----GG~I~PG~~l~~~aL~~~----------------------------------------Ta~Lp~v~~~~~~~~ 172 (246)
T PRK13322 138 HL-----GGYICPGLYLMRDALRTH----------------------------------------TRRIRYDDGTADSLS 172 (246)
T ss_pred Ee-----eeEEccCHHHHHHHHHhh----------------------------------------hhcCCCCcccCCCCC
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC
Q 010543 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 375 (507)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~ 375 (507)
+-++.-+.+..-++......|+..+++.......--.|+++||.+..
T Consensus 173 -~g~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vilTGG~a~~ 219 (246)
T PRK13322 173 -PGRNTVDAVERGCLLMLRGFIESQLEQARELWGPDFEIFLTGGDAPL 219 (246)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHHH
No 210
>PRK00292 glk glucokinase; Provisional
Probab=31.22 E-value=48 Score=32.48 Aligned_cols=44 Identities=30% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHcCCceeEeechhhHHHHHhhcc--------cCCC---ceeEEEEEcCCcceE
Q 010543 195 GIIAGLNVARIINEPTAAAIAYGLD--------KKGG---EKNILVFDLGGGTFD 238 (507)
Q Consensus 195 a~~agl~~~~li~Ep~Aaa~~~~~~--------~~~~---~~~~lv~D~Gggt~d 238 (507)
.+..|++.+.+.++-.|+|++-... ...+ ..+++++-+|.|-=-
T Consensus 87 ~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~ 141 (316)
T PRK00292 87 KQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGV 141 (316)
T ss_pred HHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceE
Confidence 3345887789999999999985331 1111 367888888865433
No 211
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=30.23 E-value=31 Score=36.10 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.3
Q ss_pred EEEEcCccceEEEEEEC
Q 010543 39 IGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 39 iGID~GTt~s~va~~~~ 55 (507)
+|||+|||++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999873
No 212
>PLN02192 3-ketoacyl-CoA synthase
Probab=29.52 E-value=1.6e+02 Score=31.12 Aligned_cols=55 Identities=7% Similarity=0.236 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCC-CCCHHHHHHHHhhcC
Q 010543 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFD 387 (507)
Q Consensus 333 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~-s~~p~l~~~l~~~~~ 387 (507)
.+++..++...-+.+.++++|+++++++++|+.|++.... ...|.+..+|.+.++
T Consensus 168 ~~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 168 CMAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 3455555555567888899999999999999988765322 357999999999994
No 213
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=28.73 E-value=29 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.6
Q ss_pred EEEEcCccceEEEEEE
Q 010543 39 IGIDLGTTYSCVGVYK 54 (507)
Q Consensus 39 iGID~GTt~s~va~~~ 54 (507)
+|||+|||+++++.++
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999986
No 214
>PLN02902 pantothenate kinase
Probab=28.72 E-value=4e+02 Score=30.07 Aligned_cols=76 Identities=12% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC-HHHHHHHHh---hcC--CCCCCCCCCcchhhhhhHHHh
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI-PKVQQLLKD---YFD--GKEPNKGVNPDEAVAYGAAVQ 408 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~-p~l~~~l~~---~~~--~~~v~~~~~p~~ava~GAa~~ 408 (507)
+++++.++.-+.+.|-..-- ..-....++.|+++|.+-+- |...+.|.. +++ ..+.....+-.+.-|.||.+.
T Consensus 320 eDiarSLL~mIs~NIGqiA~-L~A~~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~ 398 (876)
T PLN02902 320 EDISLSLLRMISYNIGQISY-LNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMS 398 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhc
Confidence 45555565555555443211 01123458899999998543 233333332 332 234445556678899999876
Q ss_pred hhh
Q 010543 409 GGI 411 (507)
Q Consensus 409 a~~ 411 (507)
...
T Consensus 399 ~~~ 401 (876)
T PLN02902 399 YEK 401 (876)
T ss_pred CCc
Confidence 643
No 215
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=28.53 E-value=1e+02 Score=26.28 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.7
Q ss_pred CcEEEEEcCccceEEEEEE--CCeEEEE
Q 010543 36 GTVIGIDLGTTYSCVGVYK--NGHVEII 61 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~--~g~~~ii 61 (507)
+.+++||+|+-|...+..+ ++.+.++
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~ 28 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVI 28 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEE
Confidence 3689999999999998887 3344444
No 216
>PRK12408 glucokinase; Provisional
Probab=28.39 E-value=42 Score=33.32 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.5
Q ss_pred cCCcEEEEEcCccceEEEEEEC
Q 010543 34 KLGTVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 34 ~~~~viGID~GTt~s~va~~~~ 55 (507)
++..++|+|+|.|++++++.+.
T Consensus 14 ~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 14 RPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred ccccEEEEEcChhhhheeEEec
Confidence 3445899999999999999863
No 217
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=28.24 E-value=2.8e+02 Score=28.92 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCcceEEEEEEEeCCe
Q 010543 223 GEKNILVFDLGGGTFDVSILTIDNGV 248 (507)
Q Consensus 223 ~~~~~lv~D~Gggt~dvsv~~~~~~~ 248 (507)
+...++.+|+||..+-+..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 56789999999999999999998773
No 218
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=27.73 E-value=1.3e+02 Score=28.50 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHH
Q 010543 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (507)
Q Consensus 362 ~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa 406 (507)
.++.|+ =|++..|++.+.+++.++ .++ ...||.+++|+=+.
T Consensus 172 ~~d~lI--LGCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVV--LGCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEE--ECcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHH
Confidence 366665 499999999999999984 333 45688888887554
No 219
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=27.42 E-value=1.2e+02 Score=30.45 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEEcCCcceEEEEEEEeCCeEEEEE
Q 010543 227 ILVFDLGGGTFDVSILTIDNGVFEVLS 253 (507)
Q Consensus 227 ~lv~D~Gggt~dvsv~~~~~~~~~v~~ 253 (507)
+||++.|+.++.+++++.+...++...
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~ 28 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETL 28 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeee
Confidence 799999999999999998776555443
No 220
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=27.32 E-value=1.7e+02 Score=21.16 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHhHHhcCCCCCCHHHHhhcccCCeEEeccCCceeEEEEEeCCceeEeCHHHHHHHHH
Q 010543 99 IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMIL 157 (507)
Q Consensus 99 ~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L 157 (507)
...+.+++|...+..++.+.++.+.+.+...+....+.+....-........+++.++.
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEei~ 66 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVA 66 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcccHHHHHHH
Confidence 34668899998888888888888888775322122333433222222334555555554
No 221
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=26.78 E-value=2.5e+02 Score=27.33 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=39.1
Q ss_pred ceeEEEEEcCCcceEEEEEEEeCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHh
Q 010543 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK 279 (507)
Q Consensus 224 ~~~~lv~D~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~ 279 (507)
...++.+|+|+.++.++++......+..........-....+-+.+.+.+.+.+..
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 60 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQ 60 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHh
Confidence 46789999999999999999877754444333333333357777777777666653
No 222
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=26.39 E-value=8.3 Score=33.63 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.4
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010543 36 GTVIGIDLGTTYSCVGVYKNG 56 (507)
Q Consensus 36 ~~viGID~GTt~s~va~~~~g 56 (507)
.-++|+|+||+|++++..++.
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred cceeccCCCcchHHHHHHhcc
Confidence 458999999999998887643
No 223
>PRK14878 UGMP family protein; Provisional
Probab=25.92 E-value=1e+02 Score=30.35 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHH
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 379 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~ 379 (507)
...+...+.+...++++|++++++..+++.|.++-|-...++++
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lr 82 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALR 82 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchH
Confidence 34455667788899999999999999999999998776666665
No 224
>PRK13321 pantothenate kinase; Reviewed
Probab=25.55 E-value=2.5e+02 Score=26.49 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=15.8
Q ss_pred EEEEEcCCcceEEEEEE
Q 010543 227 ILVFDLGGGTFDVSILT 243 (507)
Q Consensus 227 ~lv~D~Gggt~dvsv~~ 243 (507)
++.+|+|++++.++++.
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 58899999999999998
No 225
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=25.48 E-value=1.1e+02 Score=25.82 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=19.6
Q ss_pred ccCCcEEEEEcCccceEEEEEE-CCeEEEE
Q 010543 33 TKLGTVIGIDLGTTYSCVGVYK-NGHVEII 61 (507)
Q Consensus 33 ~~~~~viGID~GTt~s~va~~~-~g~~~ii 61 (507)
.+...+||||=|||. .+|..+ +|++-.+
T Consensus 29 ~~~~lIVGiDPG~tt-giAildL~G~~l~l 57 (138)
T PF04312_consen 29 SRRYLIVGIDPGTTT-GIAILDLDGELLDL 57 (138)
T ss_pred CCCCEEEEECCCcee-EEEEEecCCcEEEE
Confidence 356789999999885 455554 7765444
No 226
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=25.46 E-value=2.2e+02 Score=20.65 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=34.7
Q ss_pred HHHhHHhcCCCCCCHHHHhhcccCCeEEec-cCCceeEEEEEeCCceeEeCHHHHHHHHHH
Q 010543 99 IFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILT 158 (507)
Q Consensus 99 ~~~~k~llg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~ 158 (507)
...+++++|...+...+.+.++.+.|.+.. .++.-.+.+. .-......+.|++.++++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP--~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVP--SYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEE--TTSTT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcC--CCcCCcCcccHHHHHHHH
Confidence 346689999998888889999999998875 3333333333 222334567777776654
No 227
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=25.44 E-value=2.5e+02 Score=28.57 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 338 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
++-.+.++.+.|-......+ ..+|.|+++||-+ ..+.+++.+.+.+.
T Consensus 306 ~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 306 IKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33445555555555444432 1389999999999 89999999999874
No 228
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=25.38 E-value=1.2e+02 Score=29.94 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHH
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ 379 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~ 379 (507)
...+...+.+...++++|++++++..+++.|.++-|-...++++
T Consensus 40 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 40 EAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 34455667788889999999999999999999998876666665
No 229
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=24.90 E-value=1.6e+02 Score=22.60 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=17.9
Q ss_pred eEEEEEcCCcceEEEEEEEeCCe
Q 010543 226 NILVFDLGGGTFDVSILTIDNGV 248 (507)
Q Consensus 226 ~~lv~D~Gggt~dvsv~~~~~~~ 248 (507)
.+|.+|+||..+-++++..+...
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~~ 24 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGKL 24 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCCE
Confidence 37899999999999988754443
No 230
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=24.78 E-value=70 Score=28.42 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.6
Q ss_pred EEEEcCccceEEEEEECC
Q 010543 39 IGIDLGTTYSCVGVYKNG 56 (507)
Q Consensus 39 iGID~GTt~s~va~~~~g 56 (507)
||||.|.|||=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 899999999988777765
No 231
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=24.02 E-value=1.3e+02 Score=25.36 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.1
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010543 38 VIGIDLGTTYSCVGVYKNGH 57 (507)
Q Consensus 38 viGID~GTt~s~va~~~~g~ 57 (507)
+||||+|-....+++.+++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 59999999999999887554
No 232
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=23.92 E-value=3.1e+02 Score=30.62 Aligned_cols=57 Identities=14% Similarity=0.329 Sum_probs=38.2
Q ss_pred CCCcCcEEEEeCCCCC---HHHHHHHHHHHHHcCCceeEeechhhHHHHHhhcccCCCceeEEEEEcCCcceEEEEEE
Q 010543 169 GKKIKDAVVTVPAYFN---DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (507)
Q Consensus 169 ~~~~~~~viTVP~~~~---~~qr~~l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lv~D~Gggt~dvsv~~ 243 (507)
.....+++|.|++.|+ ..-++.+.+||+.. -+++++|.. .+.+.|||.+++|.-+.-
T Consensus 712 ~~~~~R~~i~v~vay~sD~~~V~~~Ll~~A~~~----p~Vl~~P~P--------------~v~f~~fg~s~L~fELr~ 771 (835)
T COG3264 712 RDTTTRLVIPVGVAYGSDPELVRELLLEAAREH----PRVLKDPAP--------------EVFFTAFGASSLDFELRV 771 (835)
T ss_pred cCceEEEEEEecccCCCCHHHHHHHHHHHHHhC----CCccCCCCC--------------eeEeecccccceeEEEEE
Confidence 3456788999998887 34466667776543 234444433 456899999999976543
No 233
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=23.76 E-value=1.3e+02 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHH
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 380 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~ 380 (507)
...+...+.+...|+++|++++++..+++.|.++-|-...++++-
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrv 87 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRV 87 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHH
Confidence 344567778889999999999999999999999999988888874
No 234
>PLN02914 hexokinase
Probab=23.37 E-value=2.2e+02 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCcceEEEEEEEeC
Q 010543 223 GEKNILVFDLGGGTFDVSILTIDN 246 (507)
Q Consensus 223 ~~~~~lv~D~Gggt~dvsv~~~~~ 246 (507)
+...++.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 566799999999999999999976
No 235
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.28 E-value=2.6e+02 Score=30.56 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=36.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhhcCCC--CCC---CCCCcchhhhhhHHHhh
Q 010543 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGK--EPN---KGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 361 ~~i~~V~lvGG~s~~p~l~~~l~~~~~~~--~v~---~~~~p~~ava~GAa~~a 409 (507)
..++.|.|+||..+..+|.+.+.+.+.+. ++. ....-|-.++.|=++.+
T Consensus 692 ~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIslGQ~v~~ 745 (750)
T COG0068 692 YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISLGQAVAA 745 (750)
T ss_pred cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeHHHHHHH
Confidence 34789999999999999999998888533 222 22334667888888776
No 236
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.20 E-value=78 Score=31.86 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC
Q 010543 338 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI 375 (507)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~ 375 (507)
++...+.+.+.|+++|+++++++++|+++++.+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 45566777889999999999999999999999998764
No 237
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=22.69 E-value=2.1e+02 Score=28.27 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHH
Q 010543 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 380 (507)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~ 380 (507)
|...+...+.+..+|+++|++++.+..+||.|-.+=|-...+.|.-
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~V 89 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLV 89 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHH
Confidence 4556778889999999999999999999999999999888887753
No 238
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=22.23 E-value=1.6e+02 Score=29.35 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHH
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQ 380 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~ 380 (507)
...+...+.+...++++|++++++..+|+.|-++-|-...+.|+=
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrV 88 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSV 88 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHH
Confidence 445667788899999999999999999999999999887777653
No 239
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=22.15 E-value=2.4e+02 Score=26.70 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=16.3
Q ss_pred EEEEcCCcceEEEEEEEeCCe
Q 010543 228 LVFDLGGGTFDVSILTIDNGV 248 (507)
Q Consensus 228 lv~D~Gggt~dvsv~~~~~~~ 248 (507)
|=+|.||.+|.+.++..+...
T Consensus 1 lGIDgGgTkt~~vl~d~~g~i 21 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNI 21 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEE
T ss_pred CEEeeChheeeeEEEeCCCCE
Confidence 358999999999998865443
No 240
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.10 E-value=2.2e+02 Score=27.81 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
+++...++.+.+.++++|+++++++++|+++++-.++ +.+.+.+.+.+
T Consensus 218 ~~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~l 265 (325)
T PRK12879 218 EVFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKL 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHc
Confidence 3444455677888999999999999999999998776 44556777776
No 241
>PLN02932 3-ketoacyl-CoA synthase
Probab=21.92 E-value=2.8e+02 Score=29.04 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEE-cCCCCCHHHHHHHHhhcC
Q 010543 331 RARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLV-GGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 331 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lv-GG~s~~p~l~~~l~~~~~ 387 (507)
...++...++...-..+.++++|+++++++++|+.|++. .-+...|.+..+|.+.++
T Consensus 138 ~~~~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 138 QQNLAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 345556666666667888899999999999999998653 333478999999999993
No 242
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=21.80 E-value=5.3e+02 Score=22.30 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=56.1
Q ss_pred eccCCceeEEEEEeCCceeEeCHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHH----------------HHHH
Q 010543 127 VNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDA----------------QRQA 190 (507)
Q Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~L~~l~~~~~~~~~~~~~~~viTVP~~~~~~----------------qr~~ 190 (507)
.+.+|+...+-.+. .. .++++++..+.+.+.+...+.- .. .+.|++|...+.. -.+.
T Consensus 14 ~d~~g~ii~~~~~~---~~-~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~ 86 (179)
T PF00480_consen 14 VDLDGEIIYSESIP---TP-TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEE 86 (179)
T ss_dssp EETTSCEEEEEEEE---HH-SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHH
T ss_pred ECCCCCEEEEEEEE---CC-CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHH
Confidence 34455544443331 11 4567777766666655555432 11 4445555433221 1233
Q ss_pred HHHHHHHcCCceeEeechhhHHHHHhhcccC-CCceeEEEEEcCCcceEEEEE
Q 010543 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (507)
Q Consensus 191 l~~aa~~agl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lv~D~Gggt~dvsv~ 242 (507)
+++ ..++ .+.+.++..|+|++...... ...++++.+.+|-| .-.+++
T Consensus 87 l~~---~~~~-pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 87 LEE---RFGV-PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHH---HHTS-EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred hhc---ccce-EEEEecCCCcceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 333 3455 45789999999988755332 24567888888775 444444
No 243
>PTZ00107 hexokinase; Provisional
Probab=21.80 E-value=2.8e+02 Score=28.99 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCcceEEEEEEEeCC
Q 010543 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (507)
Q Consensus 223 ~~~~~lv~D~Gggt~dvsv~~~~~~ 247 (507)
+...++.+|+||.++-+..+++.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4567999999999999999999764
No 244
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=21.60 E-value=2.2e+02 Score=27.42 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=35.6
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC
Q 010543 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST 373 (507)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s 373 (507)
.++.++|++.+-|.+.+|.+.+.+.+.+.++.. +--|+..-|+.
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~--vPmi~fakG~g 262 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAP--VPMILFAKGSG 262 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCC--CceEEEEcCcc
Confidence 468999999999999999999999999876543 55666665554
No 245
>PLN02362 hexokinase
Probab=21.59 E-value=3e+02 Score=29.14 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCcceEEEEEEEeCC
Q 010543 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (507)
Q Consensus 223 ~~~~~lv~D~Gggt~dvsv~~~~~~ 247 (507)
+...++.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 5667999999999999999999764
No 246
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=21.57 E-value=1.7e+02 Score=27.31 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHh
Q 010543 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD 384 (507)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~ 384 (507)
-+++.+.+.+.+.+.+.+.+++.+ .-.+.|.||++-.+.++...+.
T Consensus 5 ~~~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 5 SAELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 345556666777777777776532 4579999999998888777754
No 247
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=21.57 E-value=1.6e+02 Score=28.10 Aligned_cols=55 Identities=29% Similarity=0.432 Sum_probs=32.8
Q ss_pred cCCCCeEEEEcCCCCCHHH----HHHHHhhcCC----CCCC--CCCCcchhhhhhHHHhhhhhcC
Q 010543 360 KNQIDEIVLVGGSTRIPKV----QQLLKDYFDG----KEPN--KGVNPDEAVAYGAAVQGGILSG 414 (507)
Q Consensus 360 ~~~i~~V~lvGG~s~~p~l----~~~l~~~~~~----~~v~--~~~~p~~ava~GAa~~a~~~~~ 414 (507)
....+.|+|+|-++++|-+ ++.|++.|+. ..+. ...---.-.|.|||+.|.-+.+
T Consensus 271 s~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 271 STYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred ccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 3457789999999998755 5555555531 1121 1111123477888888755544
No 248
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=21.56 E-value=78 Score=25.82 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCC--HHHHHHHHhhcC
Q 010543 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI--PKVQQLLKDYFD 387 (507)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~--p~l~~~l~~~~~ 387 (507)
....+.|+++|+++++.+.+|+.|...|-++.. +.=.+.+++.|+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 355677999999999999999999998877664 333456777774
No 249
>PTZ00288 glucokinase 1; Provisional
Probab=21.49 E-value=83 Score=32.14 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.6
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010543 35 LGTVIGIDLGTTYSCVGVYKN 55 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~~ 55 (507)
..+++|+|+|-||+++++++.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 457999999999999999874
No 250
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=21.34 E-value=1.2e+02 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.0
Q ss_pred CcEEEEEcCccc-----eEEEEEECCeE
Q 010543 36 GTVIGIDLGTTY-----SCVGVYKNGHV 58 (507)
Q Consensus 36 ~~viGID~GTt~-----s~va~~~~g~~ 58 (507)
+.+++|||.|++ |.-|+.+++..
T Consensus 2 ~~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 2 KKVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred CeeEEEEEecccCCCCCceeEEecCCeE
Confidence 468999999998 99998886654
No 251
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=21.29 E-value=82 Score=32.55 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=19.3
Q ss_pred CCcEEEEEcCccceEEEEEE-CCe
Q 010543 35 LGTVIGIDLGTTYSCVGVYK-NGH 57 (507)
Q Consensus 35 ~~~viGID~GTt~s~va~~~-~g~ 57 (507)
++++++||-|||.+++.+++ +|+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~ 27 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN 27 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC
Confidence 57999999999999988886 443
No 252
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=21.18 E-value=1.8e+02 Score=23.36 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCCCe--EEEEcCCCCCHHHHHHHHhhcC
Q 010543 339 NDLFRKTMGPVKKAMEDAGLEKNQIDE--IVLVGGSTRIPKVQQLLKDYFD 387 (507)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~--V~lvGG~s~~p~l~~~l~~~~~ 387 (507)
+.....+.+.|++.|+.+|.+.++|-+ |+|+.-....+.+.+..+++|+
T Consensus 32 ~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 32 EAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 445566677788888888887776643 6777655678888888889995
No 253
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=20.86 E-value=86 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHh
Q 010543 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD 384 (507)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~ 384 (507)
++.+++.+-..+.|++.+...+++ .++-|=|+-.+|+.-+.+.+
T Consensus 13 ~i~~~L~~ga~~~l~~~g~~~~~i-~v~~VPGa~EiP~a~~~l~~ 56 (138)
T TIGR00114 13 DITDMLLKGAIDALKRLGAEVDNI-DVIWVPGAFELPLAVKKLAE 56 (138)
T ss_pred HHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHh
Confidence 445555666666777777665544 46679999999999877754
No 254
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=20.67 E-value=69 Score=33.03 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHH-----cCCce------eEeechhhHHHHHhhcccCC----Cc-eeEEEEEcCCcceEEEEEE
Q 010543 185 DAQRQATKDAGII-----AGLNV------ARIINEPTAAAIAYGLDKKG----GE-KNILVFDLGGGTFDVSILT 243 (507)
Q Consensus 185 ~~qr~~l~~aa~~-----agl~~------~~li~Ep~Aaa~~~~~~~~~----~~-~~~lv~D~Gggt~dvsv~~ 243 (507)
...|+++++.... -|++. ..+++-|.|...+..+-... .+ ..++++|+||-|||+-.+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 3557777766432 24432 23455566654443222211 12 3589999999999976554
No 255
>PRK13318 pantothenate kinase; Reviewed
Probab=20.50 E-value=3.7e+02 Score=25.35 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.8
Q ss_pred EEEEEcCCcceEEEEEE
Q 010543 227 ILVFDLGGGTFDVSILT 243 (507)
Q Consensus 227 ~lv~D~Gggt~dvsv~~ 243 (507)
+|.+|+|+..+-++++.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 58899999999999998
No 256
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=20.43 E-value=85 Score=27.30 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhcCCCCCCCCCCcchhhhhhHHHhh
Q 010543 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (507)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~GAa~~a 409 (507)
+.+++.+-..+.|.+.|.+..++ .|+-|=|+-.+|++-+.+.+. .+.+-.++.|+++.+
T Consensus 24 It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaLG~VIrG 82 (158)
T PRK12419 24 IVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAAALVVDG 82 (158)
T ss_pred HHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEcC
Confidence 33444444555666777766666 778899999999998877542 123344555555544
No 257
>PLN00415 3-ketoacyl-CoA synthase
Probab=20.42 E-value=2.5e+02 Score=29.29 Aligned_cols=45 Identities=9% Similarity=0.285 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCcCCCCeEEEEcCCC-CCHHHHHHHHhhcC
Q 010543 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (507)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s-~~p~l~~~l~~~~~ 387 (507)
--+.+.++++|+++++++++|+.|++.+..- ..|.+..+|.+.++
T Consensus 136 m~i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LG 181 (466)
T PLN00415 136 LVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYK 181 (466)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhC
Confidence 3456678889999999999999988654332 47999999999983
No 258
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.30 E-value=1.6e+02 Score=28.90 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHH------HhhcCCCCCCCCCCcchhhhh
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL------KDYFDGKEPNKGVNPDEAVAY 403 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l------~~~~~~~~v~~~~~p~~ava~ 403 (507)
..+...+.+...|+++|++++++..+++.|.++-|-...++++--+ ...+ ++++. ..+-.++-|.
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~~p~~-~v~h~~aha~ 115 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-NKPLI-GVNHLEGHLL 115 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-CCCEE-ecccHHHHHH
Confidence 4456677888899999999999999999999999999888886433 3334 44443 3344445544
No 259
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=20.17 E-value=2.4e+02 Score=19.83 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCce
Q 010543 176 VVTVPAYFNDAQRQATKDAGIIAGLNV 202 (507)
Q Consensus 176 viTVP~~~~~~qr~~l~~aa~~agl~~ 202 (507)
.++.|+ .+..+|..+.+.|+..|+..
T Consensus 22 ~~~f~p-m~~~~R~~iH~~a~~~gL~s 47 (63)
T PF01424_consen 22 SLEFPP-MNSFERKLIHELAEYYGLKS 47 (63)
T ss_dssp EEEEEC---SHHHHHHHHHHHHCTEEE
T ss_pred EEEECC-CCHHHHHHHHHHHHHCCCEE
Confidence 778886 89999999999999988765
No 260
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.10 E-value=2.5e+02 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCCCeEEEEcCCCCCHHHHHHHHhhc
Q 010543 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (507)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~s~~p~l~~~l~~~~ 386 (507)
+++.....+.+.++++|+++++++.+|+++++-.++ +.+.+.+.+.+
T Consensus 213 ~~~~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~---~~~~~~~~~~l 259 (319)
T PRK09352 213 VFKFAVRELAKVAREALEAAGLTPEDIDWLVPHQAN---LRIIDATAKKL 259 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHh
Confidence 444455677889999999999999999999987664 45666677776
Done!