BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010544
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 299 FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358
+F + A+L+ S QL +E + V++ P+FRAE S T RHL EFW +E E A+ DL
Sbjct: 178 YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLW 237
Query: 359 DDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXX 418
D M E V +M L+ ++E M ++ + N PF RI+Y
Sbjct: 238 DIMKVEEELVSYMVQRTLELRKKEIE-MFRDDLTTLKN-----TEPPFPRISYDEAIDIL 291
Query: 419 XXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKT 477
VEWG DL ++ ER LTE +F +P VY YPK IKAFYM+ + +D +
Sbjct: 292 QSKG-------VNVEWGDDLGADEERVLTE-EFDRPFFVYGYPKHIKAFYMKEDPNDPRK 343
Query: 478 VAAMDVLVPK 487
V A D+L P+
Sbjct: 344 VLASDMLAPE 353
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANL-QVIVDKDVADLGQLVPTGTCVY 103
L G++VR+ GWV T GK F ++ + G A + + +V ++ + + + + V
Sbjct: 14 LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVI 73
Query: 104 VEGMLK---NPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT--KLTLEFLRDRIPFRPR 158
VEG++K P G E+ V+K+ + V +++PIP+ + + E L D R
Sbjct: 74 VEGIVKADERAPGGA----EVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIR 127
Query: 159 TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
T +A+ +++ L A +L K G+ + PI+ T EG +F++
Sbjct: 128 TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL 176
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 226
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410
E F L D M E + +CD +D D E AK + IN PF R+
Sbjct: 227 ECPFITLDDLM---EKIEELVCD-TVDRLLADEE--AKKLLEH-INPKFQPPERPFLRME 279
Query: 411 YTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM- 469
Y E + F N +G D+A ER++T+ KP+++ +P IKAFYM
Sbjct: 280 YKDAIKWLQEHNVENE-FGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQ 337
Query: 470 RLNDDLKTVAAMDVLVPKV 488
R D ++D+L+P V
Sbjct: 338 RDAQDNTLTESVDLLMPGV 356
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-DKDVADLGQLVPTGTC-VYVEG 106
+V + GW+ R QGK S F + DG+ LQV++ DK L C V + G
Sbjct: 13 RVCIKGWIHRMRRQGK-SLMFFILRDGT--GFLQVLLMDKLCQTYDALTVNTECTVEIYG 69
Query: 107 MLKNPPEG 114
+K PEG
Sbjct: 70 AIKEVPEG 77
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + D+F Q+FLT S QL +ET + +V+ ++RAE S T RHLAE+ VE
Sbjct: 169 GSTLFNLDYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEA 228
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERIT 410
E F L D M E + +CD +D D E AK + IN PF R+
Sbjct: 229 ECPFITLDDLM---EKIEELVCD-TVDRLLADEE--AKKLLEH-INPKFQPPERPFLRME 281
Query: 411 YTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM- 469
Y E + F N +G D+A ER++T+ KP+++ +P IKAFYM
Sbjct: 282 YKDAIKWLQEHNVENE-FGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQ 339
Query: 470 RLNDDLKTVAAMDVLVPKV 488
R D ++D+L+P V
Sbjct: 340 RDAKDNTLTESVDLLMPGV 358
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-DKDVADLGQLVPTGTC-VYVEG 106
+V + GW+ R QGK S F + DG+ LQV++ DK L C V + G
Sbjct: 15 RVCIKGWIHRMRRQGK-SLMFFILRDGT--GFLQVLLMDKLCQTYDALTVNTECTVEIYG 71
Query: 107 MLKNPPEG 114
+K PEG
Sbjct: 72 AIKEVPEG 79
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 295 YTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ +F AFL S QL E A + VY P FRAE +T+RHL E W ++ EMA
Sbjct: 176 FPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 354 F-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412
F D ++ M+ E V +++ +H +++ + ++ + PF R++Y
Sbjct: 236 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYD 286
Query: 413 XXXXXXXXXXKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYPKGIKAFY 468
KE + WG D+ +E ER Y+ E + +Y YP K FY
Sbjct: 287 KALEILGDLGKE-------IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFY 339
Query: 469 -MRLNDDLKTVAAMDV 483
M+ ++ + A D+
Sbjct: 340 IMKYDNKPEICRAFDL 355
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVP---TG 99
L G++V+V GWV ++ G F ++ DG Q+ K D L +L+P +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIV----QITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----------KTKLTLEF 148
V VEG++ P+ K E+ +K+V +++ A+ P+P T+L F
Sbjct: 70 DVVAVEGVVNFTPKA-KLGFEILPEKIV---VLNRAETPLPLDPTGKVKAELDTRLNNRF 125
Query: 149 LRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT 208
+ R P + A+ +IR+++ A F + GF+ IHTP I + EG E+F +
Sbjct: 126 MDLRRP------EVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK 179
Query: 209 TLISDA 214
DA
Sbjct: 180 YFEEDA 185
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 295 YTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMA 353
+ +F AFL S QL + A + VY P FRAE +T+RHL E W ++ EMA
Sbjct: 176 FPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMA 235
Query: 354 F-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412
F D ++ M+ E V +++ +H +++ + ++ + PF R++Y
Sbjct: 236 FIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKL---------PFPRVSYD 286
Query: 413 XXXXXXXXXXKEGKHFENKVEWGIDLASEHER----YLTEVKFQKPVIVYNYPKGIKAFY 468
KE + WG D+ +E ER Y+ E + +Y YP K FY
Sbjct: 287 KALEILGDLGKE-------IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFY 339
Query: 469 -MRLNDDLKTVAAMDV 483
M+ ++ + A D+
Sbjct: 340 IMKYDNKPEICRAFDL 355
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Query: 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVP---TG 99
L G++V+V GWV ++ G F ++ DG Q+ K D L +L+P +
Sbjct: 14 LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIV----QITAPKKKVDPELFKLIPKLRSE 69
Query: 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----KTKLTLEFLRDRIP 154
V VEG++ P+ K E+ +K+V +++ A+ P+P K K L+ D
Sbjct: 70 DVVAVEGVVNFTPKA-KLGFEILPEKIV---VLNRAETPLPLDPTGKVKAELDTRLDNRF 125
Query: 155 FRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 214
R + A+ +IR+++ A F + GF+ IHTP I + EG E+F + DA
Sbjct: 126 MDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDA 185
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|C Chain C, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4P|D Chain D, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
In Complex With Asparaginyl-Adenylate
pdb|3M4Q|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
pdb|3M4Q|B Chain B, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs)
Length = 456
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 291 GKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350
G + +F A+LT S QL +E+ ++ + ++RAE S T RHLAE+ +E
Sbjct: 191 GSTLFKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEA 250
Query: 351 EMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDK-SCINRLRMVASTPFERI 409
E+ F +D +N E V + D MA + DK +N + + PF+R+
Sbjct: 251 ELPFISFEDLLNHLEDLVCTVID----------NVMAVHGDKIRKMNPHLKLPTRPFKRM 300
Query: 410 TYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM 469
TY K + E+G D++ + ER +T+ + P+ + ++P +KAFYM
Sbjct: 301 TYADAIKYCNDHGILNK--DKPFEYGEDISEKPERQMTD-EIGCPIFMIHFPSKMKAFYM 357
Query: 470 -RLNDDLKTVAAMDVLVPKV 488
++ ++D+L+P V
Sbjct: 358 SKVPGHPDLTESVDLLMPGV 377
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
Sulfolobus Tokodaii
Length = 429
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 299 FFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLK 358
+F ++AFL S QL E A V V+ P +RAE S T HLAEF ++ EMAF+D
Sbjct: 177 YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYN 236
Query: 359 DDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXXXX 418
D M E + + + + ++++ + NY+ + P +R+ YT
Sbjct: 237 DVMQLLEKILHNIVKTIKEEGKEELKIL--NYEPPEVK-------IPIKRLKYTEAIEIL 287
Query: 419 XXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR 470
+++G D+ + R L E + + ++P + FY +
Sbjct: 288 RSKG-------YNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTK 332
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG--QLVPTGTCVYV 104
G++V GWV R+ G F L G QV+VDK+ + G Q + + + V
Sbjct: 16 GKEVIWAGWVHLLRDLGGKKFIILRDKTGLG----QVVVDKNSSAFGISQELTQESVIQV 71
Query: 105 EGMLK---NPPEGTKQKIELRVQKVVDVGMVDPAKYPIP-----KTKLTLEF-LRDRIPF 155
G++K P G IEL +++ ++ AK P+P K K ++ LR+R+
Sbjct: 72 RGIVKADKRAPRG----IELHAEEIT---LLSKAKAPLPLDVSGKVKADIDTRLRERV-L 123
Query: 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT-----TL 210
R + AV +I++ A L K+GF+ I TP I S EG ++F V
Sbjct: 124 DLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAF 183
Query: 211 ISDADKLEKELI 222
++ + +L KEL+
Sbjct: 184 LAQSPQLYKELM 195
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
Type Aspartyl-Trna Synthetase From Thermus Thermophilus
pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
Length = 422
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 23/192 (11%)
Query: 298 DFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF-SD 356
D+F ++A+L S QL + VY P +R E HTSRHL E+ ++ EM F +D
Sbjct: 167 DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD 226
Query: 357 LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTXXXX 416
+D M EA + M + L+ D++ + + + R+ + +RI
Sbjct: 227 EEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEA-KRIL------ 279
Query: 417 XXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQK----PVIVYNYPKGIKAFYMRLN 472
KE E G DL+ E ER L E ++ + V YP+ ++ FY
Sbjct: 280 ------KE----ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPE 329
Query: 473 DDLKTVAAMDVL 484
+D T + D+L
Sbjct: 330 ED-GTTRSFDLL 340
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASY|B Chain B, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal
Structure Of Yeast Aspartyl-Trna Synthetase Complexed
With Trna Asp
pdb|1ASZ|A Chain A, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
pdb|1ASZ|B Chain B, The Active Site Of Yeast Aspartyl-Trna Synthetase:
Structural And Functional Aspects Of The Aminoacylation
Reaction
Length = 490
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G P + G + +F +A+L S Q + A VY GP FRAE+S+T RH+
Sbjct: 210 GAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMT 269
Query: 344 EFWMVEPEMAFSDLKDDM--NCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMV 401
EF ++ EMAF + ++ +E +V F+ L ++E + K Y + ++
Sbjct: 270 EFTGLDMEMAFEEHYHEVLDTLSELFV-FIFSELPKRFAHEIELVRKQY---PVEEFKLP 325
Query: 402 ASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKP----VIV 457
R+TY KE FE DL++E+E++L ++ K I+
Sbjct: 326 KDGKMVRLTYKEGIEMLRAAGKEIGDFE-------DLSTENEKFLGKLVRDKYDTDFYIL 378
Query: 458 YNYPKGIKAFY 468
+P I+ FY
Sbjct: 379 DKFPLEIRPFY 389
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 48 RQVRVGGWVKTGREQGKGSFAFLEVND------GSCPANLQVIVDKDVADLGQLVPTGTC 101
++V V R+QG + AFL + G AN + + K++ + +
Sbjct: 40 KEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESI 98
Query: 102 VYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPI------------PKTKLT 145
V V G++K E T Q +E+ + K+ + P PI L
Sbjct: 99 VLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET-PEALPILLEDASRSEAEAEAAGLP 157
Query: 146 LEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG 202
+ L R+ +R RT T A+ RI+ + +L + F +HTP + + EG
Sbjct: 158 VVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGS 217
Query: 203 EMFQVT 208
+F+VT
Sbjct: 218 SVFEVT 223
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G P + G + +F +A+L S Q + A VY GP FRAE+S+T RH+
Sbjct: 207 GAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMT 266
Query: 344 EFWMVEPEMAFSDLKDDM--NCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMV 401
EF ++ EMAF + ++ +E +V F+ L ++E + K Y + ++
Sbjct: 267 EFTGLDMEMAFEEHYHEVLDTLSELFV-FIFSELPKRFAHEIELVRKQY---PVEEFKLP 322
Query: 402 ASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKP----VIV 457
R+TY KE FE DL++E+E++L ++ K I+
Sbjct: 323 KDGKMVRLTYKEGIEMLRAAGKEIGDFE-------DLSTENEKFLGKLVRDKYDTDFYIL 375
Query: 458 YNYPKGIKAFY 468
+P I+ FY
Sbjct: 376 DKFPLEIRPFY 386
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 27/186 (14%)
Query: 48 RQVRVGGWVKTGREQGKGSFAFLEVND------GSCPANLQVIVDKDVADLGQLVPTGTC 101
++V V R+QG + AFL + G AN + + K++ + +
Sbjct: 37 KEVLFRARVHNTRQQG-ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESI 95
Query: 102 VYVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPI------------PKTKLT 145
V V G++K E T Q +E+ + K+ + P PI L
Sbjct: 96 VLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET-PEALPILLEDASRSEAEAEAAGLP 154
Query: 146 LEFLRDRIPFRP---RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAG 202
+ L R+ +R RT T A+ RI+ + +L + F +HTP + + EG
Sbjct: 155 VVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGS 214
Query: 203 EMFQVT 208
+F+VT
Sbjct: 215 SVFEVT 220
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica
pdb|3I7F|B Chain B, Aspartyl Trna Synthetase From Entamoeba Histolytica
Length = 548
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 285 GIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACA-VSNVYTFGPTFRAEHSHTSRHLA 343
G + G + +F R+A+L S QL + V+ GP FRAE+S+T RHL
Sbjct: 273 GCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLT 332
Query: 344 EFWMVEPEMAF-SDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYD-KSCINRLRMV 401
EF ++ EM + + ++ E F+ D + D+++ + K Y + I R
Sbjct: 333 EFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYR---- 388
Query: 402 ASTPFERITY 411
PF R+TY
Sbjct: 389 ---PFLRLTY 395
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQV 207
RT T A+ RI++A FL Q F+ IHTP + EG +F+V
Sbjct: 236 RTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV 285
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVY 103
G+QV + GWV R + GS F+++ D +QV D D AD L + C+
Sbjct: 15 GQQVTLCGWVN--RRRDLGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IE-----LRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
V G ++ E + IE L + DV +D + +L +L R
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLR 130
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
P +A + R + F+ GFL I TP++T + EGA
Sbjct: 131 RP------EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 24/169 (14%)
Query: 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVY 103
G+QV + GWV R + GS F+++ D +QV D D AD L + C+
Sbjct: 15 GQQVTLCGWVN--RRRDLGSLIFIDMRDRE--GIVQVFFDPDRADALKLASELRNEFCIQ 70
Query: 104 VEGMLKNPPEGTKQK------IE-----LRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDR 152
V G ++ E + IE L + DV +D + +L +L R
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLR 130
Query: 153 IPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
P +A + R + F+ GFL I TP++T + EGA
Sbjct: 131 RP------EMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGA 173
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 23/102 (22%)
Query: 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDY 295
+L ++++G+ V KLK DKA + + +V EL KA++ + + +E + L+P KD +D
Sbjct: 14 RLAVRQQGDLVRKLKEDKAPQVDVDKAVAEL-KARKRVLEAKELA-LQP----KDDIVDR 67
Query: 296 TQ-------DFFARQAFLTVSGQLQVETYACAVSNVYTFGPT 330
+ FF QAF G VS +Y FGP
Sbjct: 68 AKMEDTLKRRFFYDQAFAIYGG----------VSGLYDFGPV 99
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
R+ GW TG + K A E+ CP ++ VI+D DLG +PT + VE
Sbjct: 91 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG--LPTEAYISVE 143
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105
R+ GW TG + K A E+ CP ++ VI+D DLG +PT + VE
Sbjct: 91 RIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLG--LPTEAYISVE 143
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1EFW|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus
Thermophilus Complexed To Trnaasp From Escherichia Coli
pdb|1G51|A Chain A, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1G51|B Chain B, Aspartyl Trna Synthetase From Thermus Thermophilus At 2.4
A Resolution
pdb|1L0W|A Chain A, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
pdb|1L0W|B Chain B, Aspartyl-Trna Synthetase-1 From Space-Grown Crystals
Length = 580
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 167 RIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA 201
R+R+ + A FL ++GF+ + TP +T S EGA
Sbjct: 145 RLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 320 AVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLL 376
+ VY G FR E ++RH EF M+E A++D +D M E + + +L
Sbjct: 241 GLEKVYEIGRVFRNE-GISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVL 296
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 335 HSHTSRHLAEFWMVEPEMAFSDLKDDM 361
H HT H + FWM P +A DL+DD+
Sbjct: 141 HIHTGHHSSMFWMRVPLVAPEDLRDDI 167
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 157 PRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK 216
P+ +I A++ ++ + A LQ+ P+ G G+ T++ K
Sbjct: 350 PKEFSIPNFAQLNSSQSNAVSHVLQR--------PLSLIQGPPGTGKTVTSATIVYHLSK 401
Query: 217 LEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276
+ K+ I PS ++ +++ G V +L + RE + +SV+ L A NL
Sbjct: 402 IHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAK--SREDVESSVSNL--ALHNLVGR 457
Query: 277 EERSKLKPGIPQKD 290
+ +LK + KD
Sbjct: 458 GAKGELKNLLKLKD 471
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 29 RVLI----KSILTRPDGGAGLAGRQVRV---GGWVKTGREQGKGSFA 68
RVL+ K +L P G AGL GR++ V GGW + G G+F+
Sbjct: 247 RVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWAR----HGGGAFS 289
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 225 PPPSEAD-IEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLK 283
P S AD I+ + +++K++GEA+A V E KA E KL + +
Sbjct: 2 PMGSMADKIKCSHILVKKQGEALA---------------VQERLKAGEKFGKLAKELSID 46
Query: 284 PGIPQKDGKIDY 295
G ++DG + Y
Sbjct: 47 GGSAKRDGSLGY 58
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 29 RVLI----KSILTRPDGGAGLAGRQVRV---GGWVKTGREQGKGSFA 68
RVL+ K +L P G AGL GR++ V GGW + G G+F+
Sbjct: 246 RVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWAR----HGGGAFS 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,736,686
Number of Sequences: 62578
Number of extensions: 608132
Number of successful extensions: 1655
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 40
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)