Query 010544
Match_columns 507
No_of_seqs 205 out of 1453
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:46:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02221 asparaginyl-tRNA synt 100.0 1E-100 2E-105 830.3 40.2 505 1-505 1-510 (572)
2 PLN02532 asparagine-tRNA synth 100.0 5.6E-94 1.2E-98 780.4 36.7 480 21-505 21-571 (633)
3 PLN02603 asparaginyl-tRNA synt 100.0 4.6E-90 1E-94 747.5 36.8 411 24-505 84-503 (565)
4 COG0017 AsnS Aspartyl/asparagi 100.0 3.6E-89 7.8E-94 711.7 35.4 366 27-505 2-373 (435)
5 PTZ00425 asparagine-tRNA ligas 100.0 4.2E-88 9.2E-93 731.2 37.2 449 27-505 52-524 (586)
6 KOG0554 Asparaginyl-tRNA synth 100.0 2.4E-88 5.1E-93 685.1 28.6 383 31-504 4-387 (446)
7 TIGR00457 asnS asparaginyl-tRN 100.0 8.7E-82 1.9E-86 673.1 36.8 386 30-505 2-391 (453)
8 PRK03932 asnC asparaginyl-tRNA 100.0 6.2E-81 1.4E-85 666.7 37.3 383 28-505 2-388 (450)
9 TIGR00458 aspS_arch aspartyl-t 100.0 8E-77 1.7E-81 631.5 36.5 350 42-505 7-366 (428)
10 PRK05159 aspC aspartyl-tRNA sy 100.0 9.9E-77 2.1E-81 632.8 36.3 360 27-505 2-375 (437)
11 PTZ00401 aspartyl-tRNA synthet 100.0 1.9E-74 4E-79 625.4 36.0 368 29-505 65-488 (550)
12 PLN02850 aspartate-tRNA ligase 100.0 2E-74 4.3E-79 624.6 35.3 363 29-505 69-468 (530)
13 PRK12445 lysyl-tRNA synthetase 100.0 1.2E-70 2.7E-75 592.6 34.9 369 24-504 38-436 (505)
14 TIGR00499 lysS_bact lysyl-tRNA 100.0 2.9E-70 6.2E-75 589.5 35.0 365 25-504 27-427 (496)
15 PRK00484 lysS lysyl-tRNA synth 100.0 2.4E-70 5.3E-75 589.8 33.8 366 24-503 27-421 (491)
16 PLN02502 lysyl-tRNA synthetase 100.0 1.7E-69 3.7E-74 587.1 34.3 366 24-502 82-482 (553)
17 KOG0556 Aspartyl-tRNA syntheta 100.0 9.4E-70 2E-74 549.6 24.4 365 27-505 68-471 (533)
18 KOG0555 Asparaginyl-tRNA synth 100.0 2E-69 4.4E-74 545.2 24.1 383 8-505 93-483 (545)
19 PTZ00417 lysine-tRNA ligase; P 100.0 6.2E-67 1.3E-71 569.0 34.4 377 25-503 107-515 (585)
20 PTZ00385 lysyl-tRNA synthetase 100.0 3.2E-66 6.8E-71 565.4 36.0 383 18-504 76-497 (659)
21 PRK02983 lysS lysyl-tRNA synth 100.0 8.7E-66 1.9E-70 594.7 34.8 367 24-503 634-1025(1094)
22 TIGR00459 aspS_bact aspartyl-t 100.0 2.4E-63 5.2E-68 540.8 33.0 267 28-418 2-280 (583)
23 COG0173 AspS Aspartyl-tRNA syn 100.0 4E-63 8.7E-68 521.3 27.1 266 38-418 6-283 (585)
24 COG1190 LysU Lysyl-tRNA synthe 100.0 1.5E-62 3.3E-67 514.6 22.3 364 24-500 34-429 (502)
25 PRK00476 aspS aspartyl-tRNA sy 100.0 1.3E-59 2.9E-64 514.5 32.4 269 27-418 3-283 (588)
26 PRK12820 bifunctional aspartyl 100.0 1.5E-59 3.3E-64 517.6 32.0 264 38-418 9-297 (706)
27 PLN02903 aminoacyl-tRNA ligase 100.0 2.5E-59 5.3E-64 511.6 31.8 265 38-418 63-346 (652)
28 cd00776 AsxRS_core Asx tRNA sy 100.0 9E-59 2E-63 477.1 22.9 261 144-505 2-264 (322)
29 KOG1885 Lysyl-tRNA synthetase 100.0 6.3E-59 1.4E-63 477.8 15.0 373 24-500 78-485 (560)
30 PRK06462 asparagine synthetase 100.0 9.3E-57 2E-61 464.3 22.2 261 145-505 9-273 (335)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 8.6E-57 1.9E-61 464.7 18.8 259 146-505 2-273 (335)
32 cd00775 LysRS_core Lys_tRNA sy 100.0 5.3E-51 1.2E-55 420.6 20.3 242 160-504 2-262 (329)
33 KOG2411 Aspartyl-tRNA syntheta 100.0 7.6E-50 1.6E-54 412.8 21.5 265 38-418 38-321 (628)
34 TIGR00462 genX lysyl-tRNA synt 100.0 4.3E-49 9.4E-54 402.3 19.0 225 166-504 1-242 (304)
35 cd00669 Asp_Lys_Asn_RS_core As 100.0 8.6E-47 1.9E-51 379.1 18.5 203 166-505 1-207 (269)
36 PRK09350 poxB regulator PoxA; 100.0 1E-43 2.2E-48 363.1 18.5 222 163-504 2-247 (306)
37 cd00777 AspRS_core Asp tRNA sy 100.0 6.4E-42 1.4E-46 345.7 14.6 208 166-505 1-218 (280)
38 COG2269 Truncated, possibly in 100.0 1.1E-36 2.3E-41 298.9 12.3 226 164-503 14-255 (322)
39 cd04317 EcAspRS_like_N EcAspRS 99.8 1.9E-18 4.2E-23 156.6 13.1 119 30-160 3-133 (135)
40 cd04319 PhAsnRS_like_N PhAsnRS 99.8 1E-17 2.2E-22 145.2 12.4 99 49-155 1-103 (103)
41 cd04322 LysRS_N LysRS_N: N-ter 99.7 2.7E-17 5.8E-22 143.6 11.9 99 49-157 1-108 (108)
42 cd04316 ND_PkAspRS_like_N ND_P 99.7 5.2E-17 1.1E-21 141.9 12.7 95 41-141 6-105 (108)
43 cd04320 AspRS_cyto_N AspRS_cyt 99.7 1.5E-15 3.3E-20 131.2 12.7 88 49-140 1-99 (102)
44 cd04318 EcAsnRS_like_N EcAsnRS 99.6 6.9E-15 1.5E-19 122.0 11.6 80 49-131 1-82 (82)
45 cd04321 ScAspRS_mt_like_N ScAs 99.6 2.2E-14 4.7E-19 120.4 10.9 80 49-131 1-86 (86)
46 cd04323 AsnRS_cyto_like_N AsnR 99.6 2E-14 4.3E-19 119.9 10.6 78 49-131 1-84 (84)
47 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.6 2.9E-14 6.3E-19 119.1 10.5 79 49-131 1-85 (85)
48 PRK09537 pylS pyrolysyl-tRNA s 98.9 4.1E-09 8.8E-14 111.7 9.6 130 158-371 190-333 (417)
49 PF01336 tRNA_anti-codon: OB-f 98.9 1.4E-08 3E-13 81.5 9.4 73 50-129 1-75 (75)
50 cd00768 class_II_aaRS-like_cor 98.8 1.3E-08 2.7E-13 97.0 7.1 68 301-369 50-130 (211)
51 TIGR02367 PylS pyrrolysyl-tRNA 98.5 4.9E-07 1.1E-11 96.1 9.9 65 304-369 294-367 (453)
52 PF00587 tRNA-synt_2b: tRNA sy 98.1 1.1E-05 2.4E-10 75.8 9.0 51 323-374 85-137 (173)
53 cd00496 PheRS_alpha_core Pheny 98.1 2.2E-05 4.7E-10 77.0 10.2 66 304-371 60-131 (218)
54 PF01409 tRNA-synt_2d: tRNA sy 98.0 4.9E-05 1.1E-09 76.1 10.5 51 322-373 103-155 (247)
55 cd00773 HisRS-like_core Class 97.8 0.00014 2.9E-09 73.0 10.5 32 166-197 2-33 (261)
56 cd00778 ProRS_core_arch_euk Pr 97.7 5E-05 1.1E-09 76.5 5.4 48 323-370 121-170 (261)
57 PRK00488 pheS phenylalanyl-tRN 97.6 0.00035 7.6E-09 72.7 10.9 50 323-373 187-238 (339)
58 cd00670 Gly_His_Pro_Ser_Thr_tR 97.6 0.00033 7.2E-09 68.4 10.3 32 166-197 2-33 (235)
59 PTZ00326 phenylalanyl-tRNA syn 97.6 0.00017 3.8E-09 78.3 8.8 49 322-371 358-408 (494)
60 cd00779 ProRS_core_prok Prolyl 97.6 0.00021 4.6E-09 71.7 8.5 33 164-196 29-61 (255)
61 TIGR00442 hisS histidyl-tRNA s 97.6 0.0004 8.8E-09 73.7 10.5 34 163-196 11-44 (397)
62 TIGR00468 pheS phenylalanyl-tR 97.4 0.001 2.2E-08 68.4 11.2 50 322-372 151-202 (294)
63 PRK00037 hisS histidyl-tRNA sy 97.4 0.00082 1.8E-08 71.7 11.0 34 163-196 15-48 (412)
64 COG0016 PheS Phenylalanyl-tRNA 97.4 0.00028 6E-09 73.2 6.9 51 322-373 193-245 (335)
65 cd00772 ProRS_core Prolyl-tRNA 97.4 0.0014 3E-08 66.3 11.8 46 323-369 121-169 (264)
66 cd00771 ThrRS_core Threonyl-tR 97.4 0.00041 8.8E-09 71.2 8.0 33 165-197 29-61 (298)
67 PLN02853 Probable phenylalanyl 97.4 0.00063 1.4E-08 73.8 9.7 48 323-371 344-393 (492)
68 PRK04172 pheS phenylalanyl-tRN 97.4 0.00046 9.9E-09 75.7 8.7 49 322-371 351-401 (489)
69 cd00774 GlyRS-like_core Glycyl 97.4 0.00024 5.3E-09 71.2 6.0 37 165-207 31-69 (254)
70 PRK09194 prolyl-tRNA synthetas 97.4 0.0012 2.6E-08 73.7 11.6 33 164-196 45-77 (565)
71 TIGR00409 proS_fam_II prolyl-t 97.4 0.0012 2.6E-08 73.7 11.5 34 163-196 44-77 (568)
72 TIGR00414 serS seryl-tRNA synt 97.4 0.0011 2.4E-08 71.3 10.8 35 163-197 170-204 (418)
73 PRK05431 seryl-tRNA synthetase 97.3 0.00096 2.1E-08 71.9 9.6 70 302-372 223-306 (425)
74 cd00770 SerRS_core Seryl-tRNA 97.3 0.00091 2E-08 68.7 8.8 33 164-196 50-82 (297)
75 PLN02788 phenylalanine-tRNA sy 97.3 0.00094 2E-08 71.1 8.9 57 316-373 142-212 (402)
76 CHL00201 syh histidine-tRNA sy 97.2 0.0013 2.8E-08 71.0 9.8 35 163-197 15-49 (430)
77 TIGR00408 proS_fam_I prolyl-tR 97.2 0.00057 1.2E-08 74.6 6.2 49 323-371 127-177 (472)
78 PLN02530 histidine-tRNA ligase 97.2 0.0019 4.2E-08 70.7 10.2 34 163-196 81-114 (487)
79 PRK12293 hisZ ATP phosphoribos 97.2 0.0018 3.9E-08 66.1 9.3 35 163-197 16-50 (281)
80 PRK12292 hisZ ATP phosphoribos 97.1 0.0019 4.1E-08 68.8 9.4 34 163-196 14-47 (391)
81 PRK12305 thrS threonyl-tRNA sy 97.1 0.0022 4.8E-08 71.6 10.3 34 163-196 203-236 (575)
82 TIGR00418 thrS threonyl-tRNA s 97.1 0.0028 6.2E-08 70.5 10.7 33 164-196 198-230 (563)
83 cd04489 ExoVII_LU_OBF ExoVII_L 97.1 0.0071 1.5E-07 48.9 10.4 73 50-127 2-75 (78)
84 PRK12444 threonyl-tRNA synthet 97.1 0.0027 5.8E-08 71.9 10.3 47 323-371 357-407 (639)
85 PRK00413 thrS threonyl-tRNA sy 97.0 0.0035 7.7E-08 70.8 10.8 36 162-197 266-301 (638)
86 COG0124 HisS Histidyl-tRNA syn 97.0 0.0027 5.9E-08 68.3 8.9 47 322-369 102-152 (429)
87 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.9 0.015 3.3E-07 49.0 11.4 75 50-132 2-80 (95)
88 PLN02972 Histidyl-tRNA synthet 96.9 0.0033 7.2E-08 71.7 9.1 37 160-196 335-371 (763)
89 PRK08661 prolyl-tRNA synthetas 96.9 0.0019 4E-08 70.7 7.0 46 323-369 133-180 (477)
90 PRK03991 threonyl-tRNA synthet 96.9 0.0017 3.8E-08 72.9 6.7 51 323-373 310-364 (613)
91 PLN02908 threonyl-tRNA synthet 96.9 0.0043 9.3E-08 70.8 9.9 50 323-373 404-456 (686)
92 PRK12325 prolyl-tRNA synthetas 96.9 0.0053 1.2E-07 66.5 10.1 32 165-196 46-77 (439)
93 PF13393 tRNA-synt_His: Histid 96.8 0.0049 1.1E-07 63.2 8.9 34 163-196 7-40 (311)
94 PLN02837 threonine-tRNA ligase 96.8 0.0023 5E-08 72.1 7.0 50 323-373 331-383 (614)
95 PRK12420 histidyl-tRNA synthet 96.8 0.005 1.1E-07 66.3 9.2 34 163-196 15-48 (423)
96 PRK12421 ATP phosphoribosyltra 96.8 0.0066 1.4E-07 64.8 10.1 35 163-197 18-52 (392)
97 TIGR00443 hisZ_biosyn_reg ATP 96.7 0.0053 1.2E-07 63.4 8.5 33 164-196 6-38 (314)
98 PRK14799 thrS threonyl-tRNA sy 96.7 0.0062 1.3E-07 67.7 9.1 50 323-373 251-303 (545)
99 PLN02320 seryl-tRNA synthetase 96.6 0.0086 1.9E-07 65.6 9.5 48 323-373 315-370 (502)
100 KOG2784 Phenylalanyl-tRNA synt 96.6 0.0013 2.9E-08 68.0 2.8 48 322-370 334-383 (483)
101 PRK04173 glycyl-tRNA synthetas 96.6 0.0066 1.4E-07 66.1 8.3 52 321-374 185-240 (456)
102 cd04483 hOBFC1_like hOBFC1_lik 96.5 0.032 7E-07 47.5 10.4 68 52-127 2-90 (92)
103 PF13742 tRNA_anti_2: OB-fold 96.3 0.052 1.1E-06 46.8 10.4 76 47-127 21-98 (99)
104 PRK12295 hisZ ATP phosphoribos 96.1 0.02 4.2E-07 60.9 8.3 27 171-197 9-35 (373)
105 cd04487 RecJ_OBF2_like RecJ_OB 96.0 0.064 1.4E-06 43.7 9.2 72 50-129 1-73 (73)
106 PLN02678 seryl-tRNA synthetase 96.0 0.021 4.5E-07 62.0 7.9 33 164-196 172-204 (448)
107 cd04492 YhaM_OBF_like YhaM_OBF 95.9 0.12 2.6E-06 41.7 10.7 61 66-132 19-79 (83)
108 cd04485 DnaE_OBF DnaE_OBF: A s 95.7 0.056 1.2E-06 43.3 7.9 72 52-130 2-78 (84)
109 TIGR00470 sepS O-phosphoseryl- 95.7 0.012 2.6E-07 63.6 4.7 50 322-371 208-259 (533)
110 COG5235 RFA2 Single-stranded D 95.7 0.061 1.3E-06 52.1 9.0 94 27-128 39-142 (258)
111 PF04076 BOF: Bacterial OB fol 95.7 0.11 2.4E-06 45.3 9.8 82 28-127 21-102 (103)
112 cd04490 PolII_SU_OBF PolII_SU_ 95.7 0.12 2.7E-06 42.6 9.7 68 50-126 2-72 (79)
113 cd03524 RPA2_OBF_family RPA2_O 95.5 0.13 2.8E-06 39.6 8.8 69 51-126 1-73 (75)
114 COG1107 Archaea-specific RecJ- 95.5 0.037 8.1E-07 60.7 7.5 90 25-130 198-289 (715)
115 COG0172 SerS Seryl-tRNA synthe 95.4 0.048 1E-06 58.6 7.9 33 165-197 173-205 (429)
116 TIGR00156 conserved hypothetic 95.3 0.25 5.3E-06 44.7 10.9 81 29-127 45-125 (126)
117 COG3111 Periplasmic protein wi 95.0 0.28 6E-06 43.9 10.1 83 29-129 45-127 (128)
118 cd04482 RPA2_OBF_like RPA2_OBF 94.8 0.3 6.6E-06 41.4 9.7 73 50-132 1-77 (91)
119 PRK10053 hypothetical protein; 94.8 0.36 7.8E-06 43.9 10.7 80 30-127 50-129 (130)
120 PF10451 Stn1: Telomere regula 94.7 0.25 5.5E-06 49.9 10.6 75 48-131 67-149 (256)
121 PRK07373 DNA polymerase III su 94.7 0.16 3.4E-06 55.3 9.5 78 46-130 279-361 (449)
122 COG4085 Predicted RNA-binding 94.5 0.16 3.4E-06 48.7 8.0 74 44-124 48-128 (204)
123 PRK06461 single-stranded DNA-b 94.2 0.95 2.1E-05 40.9 12.0 86 29-131 4-100 (129)
124 PF12869 tRNA_anti-like: tRNA_ 93.4 0.23 4.9E-06 45.0 6.6 67 44-111 64-132 (144)
125 PRK00960 seryl-tRNA synthetase 93.3 0.098 2.1E-06 57.7 4.8 48 323-371 337-387 (517)
126 COG0441 ThrS Threonyl-tRNA syn 93.3 0.16 3.5E-06 56.8 6.5 51 322-374 302-356 (589)
127 PRK05672 dnaE2 error-prone DNA 93.3 0.29 6.3E-06 58.6 8.9 79 46-131 952-1033(1046)
128 PRK15491 replication factor A; 93.2 0.54 1.2E-05 50.1 10.0 91 29-133 57-157 (374)
129 PRK12294 hisZ ATP phosphoribos 93.1 0.59 1.3E-05 47.6 9.8 34 163-196 4-37 (272)
130 PRK14699 replication factor A; 92.7 0.83 1.8E-05 50.3 10.8 95 30-139 58-162 (484)
131 PRK06826 dnaE DNA polymerase I 92.4 0.51 1.1E-05 57.0 9.5 81 46-131 990-1074(1151)
132 PRK07374 dnaE DNA polymerase I 92.1 0.55 1.2E-05 56.8 9.2 79 46-130 999-1081(1170)
133 cd04474 RPA1_DBD_A RPA1_DBD_A: 92.0 1.2 2.5E-05 38.6 8.9 76 48-124 10-97 (104)
134 PRK13480 3'-5' exoribonuclease 91.9 1.3 2.9E-05 46.0 10.7 80 46-132 10-93 (314)
135 PRK06920 dnaE DNA polymerase I 91.7 0.64 1.4E-05 55.9 9.1 79 46-131 942-1025(1107)
136 PTZ00213 asparagine synthetase 91.4 9.4 0.0002 39.9 15.9 56 322-377 93-148 (348)
137 cd04488 RecG_wedge_OBF RecG_we 91.3 2 4.3E-05 33.4 8.9 58 52-112 2-62 (75)
138 PRK05673 dnaE DNA polymerase I 91.3 0.75 1.6E-05 55.6 9.2 80 46-131 976-1059(1135)
139 cd04479 RPA3 RPA3: A subfamily 91.3 3.2 7E-05 35.8 10.8 69 44-131 12-80 (101)
140 COG0442 ProS Prolyl-tRNA synth 91.1 1.1 2.3E-05 49.6 9.3 47 323-369 131-179 (500)
141 PF03100 CcmE: CcmE; InterPro 90.7 3.7 8E-05 37.2 11.1 88 30-137 37-127 (131)
142 PF08661 Rep_fac-A_3: Replicat 90.6 1.5 3.2E-05 38.3 8.1 68 28-112 6-73 (109)
143 cd00645 AsnA Asparagine synthe 90.3 8.5 0.00018 39.7 14.3 168 306-504 61-244 (309)
144 PRK07279 dnaE DNA polymerase I 90.1 1.1 2.5E-05 53.3 9.1 74 47-127 884-963 (1034)
145 PRK15491 replication factor A; 89.7 3.9 8.5E-05 43.6 12.0 93 29-133 166-267 (374)
146 PRK09616 pheT phenylalanyl-tRN 89.5 1.6 3.4E-05 48.9 9.2 46 323-369 440-487 (552)
147 COG1570 XseA Exonuclease VII, 89.1 1.7 3.8E-05 46.9 8.8 76 48-128 24-100 (440)
148 cd04484 polC_OBF polC_OBF: A s 89.0 6.8 0.00015 32.5 10.5 75 50-127 2-80 (82)
149 TIGR00415 serS_MJ seryl-tRNA s 88.6 1.7 3.8E-05 47.9 8.5 68 303-371 309-387 (520)
150 cd04491 SoSSB_OBF SoSSB_OBF: A 88.3 4.5 9.8E-05 33.0 9.0 54 65-126 22-76 (82)
151 KOG2324 Prolyl-tRNA synthetase 88.2 2.1 4.6E-05 45.0 8.4 34 163-196 49-82 (457)
152 PRK07211 replication factor A; 88.1 3.9 8.4E-05 45.0 10.8 83 30-126 54-146 (485)
153 PRK02801 primosomal replicatio 87.9 7.2 0.00016 33.7 10.3 48 81-129 50-100 (101)
154 PRK07459 single-stranded DNA-b 87.7 5.9 0.00013 35.4 10.0 83 48-132 4-104 (121)
155 PRK14699 replication factor A; 87.6 4 8.7E-05 45.0 10.6 85 46-133 285-377 (484)
156 PRK13150 cytochrome c-type bio 87.2 8.4 0.00018 36.2 11.0 80 45-140 55-137 (159)
157 PRK05425 asparagine synthetase 87.1 21 0.00046 37.2 14.7 169 306-505 72-255 (327)
158 PRK07217 replication factor A; 87.0 7 0.00015 40.6 11.3 105 18-140 61-168 (311)
159 PRK12366 replication factor A; 86.9 3.8 8.3E-05 46.7 10.3 85 28-125 62-154 (637)
160 PRK13165 cytochrome c-type bio 86.9 10 0.00022 35.8 11.3 80 45-140 55-137 (160)
161 PRK13254 cytochrome c-type bio 86.7 9.8 0.00021 35.4 11.1 88 30-138 38-128 (148)
162 PRK00286 xseA exodeoxyribonucl 86.0 4.8 0.0001 43.6 10.1 79 47-130 23-102 (438)
163 TIGR00469 pheS_mito phenylalan 85.3 3.7 8.1E-05 44.8 8.7 26 323-349 135-160 (460)
164 PRK12366 replication factor A; 85.3 6.8 0.00015 44.7 11.2 95 28-130 278-381 (637)
165 TIGR00237 xseA exodeoxyribonuc 84.4 5.7 0.00012 43.2 9.7 77 49-130 19-96 (432)
166 PRK08486 single-stranded DNA-b 83.9 6.2 0.00013 37.9 8.7 52 81-132 51-108 (182)
167 PRK10917 ATP-dependent DNA hel 83.9 7.4 0.00016 44.7 10.9 76 45-128 57-136 (681)
168 TIGR00617 rpa1 replication fac 83.4 8 0.00017 43.9 10.8 94 30-133 181-286 (608)
169 PF15072 DUF4539: Domain of un 83.3 9.4 0.0002 32.2 8.5 59 50-112 5-64 (86)
170 PRK06863 single-stranded DNA-b 83.2 8.6 0.00019 36.5 9.2 52 81-132 54-111 (168)
171 PRK07211 replication factor A; 82.3 9.7 0.00021 42.0 10.4 92 28-133 160-260 (485)
172 PRK07275 single-stranded DNA-b 82.2 7.6 0.00016 36.6 8.4 52 81-132 49-106 (162)
173 PF03590 AsnA: Aspartate-ammon 81.5 41 0.00089 33.7 13.5 74 304-377 65-144 (244)
174 PRK05813 single-stranded DNA-b 81.0 16 0.00034 36.2 10.5 85 46-132 108-210 (219)
175 PRK06751 single-stranded DNA-b 80.6 12 0.00027 35.6 9.3 52 81-132 49-106 (173)
176 PRK13159 cytochrome c-type bio 80.6 24 0.00052 33.1 10.9 88 30-138 38-128 (155)
177 KOG3108 Single-stranded DNA-bi 79.7 13 0.00028 37.8 9.7 74 49-130 70-146 (265)
178 PRK06293 single-stranded DNA-b 79.1 14 0.0003 34.9 9.0 52 81-132 45-102 (161)
179 PRK07218 replication factor A; 78.4 17 0.00036 39.6 10.6 84 29-130 58-147 (423)
180 PRK06752 single-stranded DNA-b 77.2 18 0.00039 31.6 8.7 52 81-132 49-106 (112)
181 PRK06958 single-stranded DNA-b 76.9 16 0.00035 35.1 9.0 52 81-132 54-111 (182)
182 PRK08763 single-stranded DNA-b 76.8 20 0.00044 33.8 9.5 52 81-132 54-111 (164)
183 COG3705 HisZ ATP phosphoribosy 76.5 6.4 0.00014 42.2 6.7 33 165-197 16-48 (390)
184 PRK08182 single-stranded DNA-b 76.4 22 0.00048 32.9 9.5 51 81-131 56-112 (148)
185 KOG2509 Seryl-tRNA synthetase 75.9 2.2 4.7E-05 45.9 2.9 33 164-196 183-215 (455)
186 PRK08402 replication factor A; 75.5 22 0.00048 37.7 10.3 88 29-129 62-159 (355)
187 PRK06386 replication factor A; 75.2 25 0.00054 37.4 10.6 87 28-133 106-198 (358)
188 PRK14894 glycyl-tRNA synthetas 74.2 2.8 6.1E-05 46.2 3.4 34 323-358 167-203 (539)
189 PRK13732 single-stranded DNA-b 73.6 28 0.0006 33.3 9.6 86 48-133 7-116 (175)
190 PRK07218 replication factor A; 73.2 48 0.001 36.1 12.4 77 47-132 172-254 (423)
191 PRK07135 dnaE DNA polymerase I 72.4 10 0.00023 45.2 7.7 64 46-112 896-962 (973)
192 PRK07274 single-stranded DNA-b 71.6 44 0.00096 30.1 10.0 51 81-131 49-104 (131)
193 PF00436 SSB: Single-strand bi 71.3 8.5 0.00018 32.4 5.1 49 81-129 50-104 (104)
194 PRK07080 hypothetical protein; 70.8 4.1 8.9E-05 42.3 3.5 50 322-372 152-202 (317)
195 PRK05813 single-stranded DNA-b 70.6 45 0.00098 33.0 10.6 83 46-132 7-103 (219)
196 cd05694 S1_Rrp5_repeat_hs2_sc2 70.5 12 0.00026 30.3 5.5 47 51-105 7-53 (74)
197 TIGR00643 recG ATP-dependent D 69.5 28 0.00061 39.6 10.2 65 45-112 30-97 (630)
198 COG1200 RecG RecG-like helicas 67.6 38 0.00083 38.8 10.4 80 44-130 57-139 (677)
199 TIGR00621 ssb single stranded 66.7 40 0.00087 31.6 9.0 52 81-132 53-110 (164)
200 PRK00448 polC DNA polymerase I 66.1 50 0.0011 41.4 11.9 83 46-130 235-321 (1437)
201 COG0423 GRS1 Glycyl-tRNA synth 65.4 2.8 6E-05 46.3 1.0 31 166-196 40-72 (558)
202 PRK06642 single-stranded DNA-b 65.2 43 0.00094 31.1 8.8 83 48-132 6-117 (152)
203 cd04496 SSB_OBF SSB_OBF: A sub 64.9 13 0.00029 30.8 4.9 50 80-129 45-100 (100)
204 cd04486 YhcR_OBF_like YhcR_OBF 64.5 46 0.001 27.3 7.9 71 51-130 1-76 (78)
205 PRK00036 primosomal replicatio 63.6 20 0.00043 31.6 5.8 52 80-132 48-99 (107)
206 COG1571 Predicted DNA-binding 61.8 42 0.0009 36.4 8.9 73 47-131 266-343 (421)
207 PRK05733 single-stranded DNA-b 58.9 92 0.002 29.7 9.9 51 81-131 55-113 (172)
208 PLN02734 glycyl-tRNA synthetas 58.1 4.3 9.3E-05 46.5 0.9 31 166-196 109-140 (684)
209 TIGR00389 glyS_dimeric glycyl- 57.3 3.6 7.9E-05 46.0 0.2 32 165-196 36-68 (551)
210 TIGR00669 asnA aspartate--ammo 56.7 2.6E+02 0.0056 29.4 14.0 72 306-377 69-146 (330)
211 cd04497 hPOT1_OB1_like hPOT1_O 55.2 1.6E+02 0.0035 26.6 11.8 96 30-132 4-106 (138)
212 PF12857 TOBE_3: TOBE-like dom 54.8 66 0.0014 24.6 6.8 50 51-105 6-56 (58)
213 TIGR00594 polc DNA-directed DN 53.9 26 0.00057 42.3 6.5 38 46-85 980-1021(1022)
214 cd00673 AlaRS_core Alanyl-tRNA 53.1 57 0.0012 32.6 7.7 48 321-369 55-108 (232)
215 PF15490 Ten1_2: Telomere-capp 52.6 1.7E+02 0.0038 26.1 12.0 90 30-131 8-98 (118)
216 PF11736 DUF3299: Protein of u 52.2 1.3E+02 0.0028 27.9 9.5 87 40-127 48-143 (146)
217 COG3689 Predicted membrane pro 52.1 65 0.0014 32.7 7.9 85 43-133 171-263 (271)
218 PF13567 DUF4131: Domain of un 52.0 80 0.0017 28.0 8.1 63 47-112 75-145 (176)
219 PRK07772 single-stranded DNA-b 52.0 86 0.0019 30.3 8.6 46 81-126 55-106 (186)
220 PF03843 Slp: Outer membrane l 50.6 1.1E+02 0.0024 28.6 8.9 89 24-120 14-115 (160)
221 PRK04036 DNA polymerase II sma 49.6 64 0.0014 35.8 8.3 62 46-110 152-216 (504)
222 TIGR01405 polC_Gram_pos DNA po 47.9 1.4E+02 0.003 37.0 11.3 83 46-130 6-92 (1213)
223 KOG1035 eIF-2alpha kinase GCN2 47.5 52 0.0011 40.2 7.4 32 164-195 930-961 (1351)
224 PF00458 WHEP-TRS: WHEP-TRS do 46.3 33 0.00071 26.7 3.8 39 238-276 4-42 (56)
225 PRK06341 single-stranded DNA-b 43.9 1.6E+02 0.0034 27.9 8.8 52 81-132 55-117 (166)
226 PF02721 DUF223: Domain of unk 43.3 85 0.0018 26.4 6.4 63 70-133 2-69 (95)
227 cd04452 S1_IF2_alpha S1_IF2_al 41.4 99 0.0021 24.2 6.2 48 51-105 6-59 (76)
228 PRK09010 single-stranded DNA-b 39.3 59 0.0013 31.1 5.2 52 81-132 56-116 (177)
229 cd05705 S1_Rrp5_repeat_hs14 S1 39.0 1.2E+02 0.0026 24.3 6.4 46 51-105 6-60 (74)
230 PRK06253 O-phosphoseryl-tRNA s 38.1 36 0.00078 37.9 4.0 49 323-371 210-260 (529)
231 TIGR00752 slp outer membrane l 37.2 1.3E+02 0.0028 29.1 7.1 82 43-130 44-143 (182)
232 cd05698 S1_Rrp5_repeat_hs6_sc5 36.0 98 0.0021 23.9 5.3 46 51-105 3-54 (70)
233 KOG2298 Glycyl-tRNA synthetase 35.4 9.5 0.00021 41.7 -0.9 26 326-351 214-241 (599)
234 cd05707 S1_Rrp5_repeat_sc11 S1 35.1 1.1E+02 0.0024 23.6 5.4 46 51-105 3-54 (68)
235 COG2332 CcmE Cytochrome c-type 33.3 4.1E+02 0.0089 24.9 9.8 80 44-139 48-130 (153)
236 COG2965 PriB Primosomal replic 32.5 2.5E+02 0.0055 24.5 7.4 38 92-129 64-102 (103)
237 cd00769 PheRS_beta_core Phenyl 31.3 63 0.0014 30.9 4.1 45 323-371 80-137 (198)
238 PF15513 DUF4651: Domain of un 30.9 59 0.0013 25.9 3.1 22 167-188 2-23 (62)
239 PRK06386 replication factor A; 29.3 4.2E+02 0.009 28.3 10.1 79 30-125 3-87 (358)
240 PF03459 TOBE: TOBE domain; I 28.9 2.4E+02 0.0051 21.4 6.3 51 51-105 6-56 (64)
241 COG0423 GRS1 Glycyl-tRNA synth 27.4 54 0.0012 36.5 3.2 31 176-208 71-101 (558)
242 cd05708 S1_Rrp5_repeat_sc12 S1 26.2 1.8E+02 0.004 22.5 5.4 47 51-105 5-57 (77)
243 COG2176 PolC DNA polymerase II 25.6 2E+02 0.0043 35.4 7.4 79 49-130 241-324 (1444)
244 cd04453 S1_RNase_E S1_RNase_E: 23.8 1.9E+02 0.004 24.2 5.2 51 46-105 7-66 (88)
245 PF14485 DUF4431: Domain of un 23.8 90 0.002 23.4 2.9 33 81-114 2-34 (48)
246 TIGR00389 glyS_dimeric glycyl- 23.2 79 0.0017 35.6 3.6 32 323-356 185-219 (551)
247 cd04472 S1_PNPase S1_PNPase: P 22.8 2.8E+02 0.006 20.8 5.7 46 51-105 3-54 (68)
248 PRK01584 alanyl-tRNA synthetas 22.5 2E+02 0.0043 32.8 6.6 47 321-368 57-108 (594)
249 TIGR00638 Mop molybdenum-pteri 22.5 3.5E+02 0.0077 20.6 7.0 51 51-105 8-58 (69)
250 cd05692 S1_RPS1_repeat_hs4 S1_ 22.5 2.6E+02 0.0057 20.8 5.5 46 51-105 3-54 (69)
251 PF04057 Rep-A_N: Replication 22.4 3.8E+02 0.0082 23.0 7.0 60 67-130 39-100 (101)
252 cd05689 S1_RPS1_repeat_ec4 S1_ 22.2 2.7E+02 0.0058 21.5 5.6 21 51-75 6-26 (72)
253 cd04480 RPA1_DBD_A_like RPA1_D 22.1 4.3E+02 0.0094 21.4 7.2 42 67-109 20-62 (86)
254 cd05685 S1_Tex S1_Tex: The C-t 20.7 2.9E+02 0.0063 20.5 5.4 46 51-105 3-54 (68)
No 1
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=1.2e-100 Score=830.28 Aligned_cols=505 Identities=75% Similarity=1.197 Sum_probs=446.2
Q ss_pred CCCCCC-Cccccccccccccc--ccccccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCC
Q 010544 1 MADNEL-PVDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC 77 (507)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg 77 (507)
|.|.-. |++|+|+++|-.++ +|-++++.|++|++|+...+.+.++.|++|+|+|||+++|.+|+++++|++|||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~ 80 (572)
T PLN02221 1 MGDEIVPPANQLAAVSLENDGSTVQKAQFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSC 80 (572)
T ss_pred CCCCCCChHHhhhheeccCCCcccccccccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcc
Confidence 455544 46899999998876 456689999999999976666788899999999999999999943489999999995
Q ss_pred CceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCC--CCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhcccccc
Q 010544 78 PANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPF 155 (507)
Q Consensus 78 ~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l 155 (507)
.+.||||++++.....+.|+.||+|.|+|+|+.++. +++|++||+++++.|||++++.++|++.+.++.|++|+++||
T Consensus 81 ~g~iQvVv~~~~~~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hL 160 (572)
T PLN02221 81 PANLQVMVDSSLYDLSTLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHL 160 (572)
T ss_pred cccEEEEEcCchhhHHhcCCCceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchh
Confidence 445999998764333346899999999999998764 245799999999999999975689999888899999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHH
Q 010544 156 RPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAA 235 (507)
Q Consensus 156 ~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (507)
|.|++.++++||+||.+.+++|+||+++||+||+||+|++++||||+++|+|+|+.+........++.++..+..++||+
T Consensus 161 R~R~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (572)
T PLN02221 161 RSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAA 240 (572)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999998865433333344555666667789999
Q ss_pred HHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHH
Q 010544 236 KLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVE 315 (507)
Q Consensus 236 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le 315 (507)
+++|.++|+.++++|+++.|+|++.|+++++..+++...-.+......|++|.+.|+..|+.+||++++||+||||||||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e 320 (572)
T PLN02221 241 RLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVE 320 (572)
T ss_pred hhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHH
Confidence 99999999999999999999999999999999999888888888888899998889999999999999999999999999
Q ss_pred HHhhccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhh
Q 010544 316 TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCI 395 (507)
Q Consensus 316 ~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~ 395 (507)
++++|++|||+||||||||+++|+||||||||||+||+|.|++|+|+++|+||+++++.+.++|.++++.++..++...+
T Consensus 321 ~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~ 400 (572)
T PLN02221 321 TYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCI 400 (572)
T ss_pred HHHHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888887766655556
Q ss_pred hhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCc
Q 010544 396 NRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDL 475 (507)
Q Consensus 396 ~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~ 475 (507)
+.|+..+..||+||||.||+++|++....|.+++..++||.||++++|++|++.++++|+||+|||..++||||+.++|+
T Consensus 401 ~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~~pvfv~dyP~~~~pfy~~~~~d~ 480 (572)
T PLN02221 401 DRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKPLIVYNYPKGIKAFYMRLNDDE 480 (572)
T ss_pred hhhhhccCCCceEEEHHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcCCcEEEEcCChhhCcccccCCCCC
Confidence 66666678899999999999999875333444444568999999999999999777899999999999999999888788
Q ss_pred CeEEEEEEEcCCceEEeccccccccccccc
Q 010544 476 KTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 476 ~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
.+++|||||+||++||++|+||+|+|++|.
T Consensus 481 ~~~~~fDLl~~g~~El~~g~~R~~r~e~l~ 510 (572)
T PLN02221 481 KTVAAMDVLVPKVGELIGGSQREERYDVIK 510 (572)
T ss_pred ceEEEEEEecCCceEECCHHHHHHHHHHHH
Confidence 899999999998889999999999999863
No 2
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=5.6e-94 Score=780.43 Aligned_cols=480 Identities=50% Similarity=0.868 Sum_probs=414.5
Q ss_pred ccccccccceehhhhhcCCCCCCCCCCCEEEEEEEEEee-----------------------------------------
Q 010544 21 VQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG----------------------------------------- 59 (507)
Q Consensus 21 ~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i----------------------------------------- 59 (507)
...-.|+.|+.+|.|++++|.+...+|+.|.|.|||++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (633)
T PLN02532 21 ITPSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPI 100 (633)
T ss_pred ccchhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHH
Confidence 345689999999999999999999999999999999763
Q ss_pred -----------------------------eecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeC
Q 010544 60 -----------------------------REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 60 -----------------------------R~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~ 110 (507)
|.+| +++||+||||||.+.||||++++.....+.|+.|++|.|+|+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g--~i~FI~LrDGSg~~~lQvVv~~~~~~~~~~L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 101 FRSIAKVLSGGGSTYPVREKTEIAIQKSAPPPP--SVAYLLISDGSCVASLQVVVDSALAPLTQLMATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHHHcCCCCCCCcccccccccccccccCC--CcEEEEEECCCCccceEEEEeCCcccHhhcCCCceEEEEEEEEEe
Confidence 4555 899999999999888999998765444467899999999999998
Q ss_pred CCC-CCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEc
Q 010544 111 PPE-GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIH 189 (507)
Q Consensus 111 ~~~-g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~ 189 (507)
++. +++|++||++++|.||+++.+.+||++++.+++|++|++||||+|++.++++||+||.|++++|+||+++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 842 3578999999999999998767899998888999999999999999999999999999999999999999999999
Q ss_pred cCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHH
Q 010544 190 TPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKA 269 (507)
Q Consensus 190 TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (507)
||+|++++||||+++|+|+|+.+.........+.++- -..+.+|+++++.++++.|..++++..++||+.++.+.+...
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHET-EGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKT 337 (633)
T ss_pred CCeecccCCCccccccceecccccccccccccccccc-ccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 9999999999999999999875432211111111111 234678999999999999999999999999999998887754
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCcccccccc
Q 010544 270 KENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVE 349 (507)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE 349 (507)
++-....+..-...+..+.+.|+..|+.+||++++||+||||||||++++||+|||+||||||||+++|+|||+||||||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE 417 (633)
T PLN02532 338 NQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVE 417 (633)
T ss_pred ccccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCccccccccee
Confidence 32222222222244444467788899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccc
Q 010544 350 PEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFE 429 (507)
Q Consensus 350 ~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~ 429 (507)
+||+|+|++|+|+++|+||+++++.++++|.++|++++..++...+++|+..++.||+||||.||+++|++.. +.+++
T Consensus 418 ~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~--~~~~e 495 (633)
T PLN02532 418 VEMAFSELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQAT--DKKFE 495 (633)
T ss_pred eeehhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhc--CCCcc
Confidence 9999999999999999999999999999999999988766665566677767888999999999999997642 33455
Q ss_pred cccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 430 NKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 430 ~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
...+||.||++++|++|++.+++.|+||+|||..++||||++++|+++++|||||+||+|||+|||||||+|+.|+
T Consensus 496 ~~~~~g~dL~~e~Er~L~~~~~~~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~ 571 (633)
T PLN02532 496 TKPEWGIALTTEHLSYLADEIYKKPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILN 571 (633)
T ss_pred cccccCCccChHHHHHHHHHHcCCCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHH
Confidence 5678999999999999999878999999999999999999988889999999999998889999999999999874
No 3
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=4.6e-90 Score=747.50 Aligned_cols=411 Identities=53% Similarity=0.880 Sum_probs=360.0
Q ss_pred cccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhc----ccCCCC
Q 010544 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG----QLVPTG 99 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~----~~L~~g 99 (507)
..+..|+.|+++.+..+......|++|+|+|||+++|.+| +++|++|+|+++...||||++++...+. +.|+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g--~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 84 GEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCC--CeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 3456789999998433334577899999999999999999 8999999999987789999987644332 148999
Q ss_pred cEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHH
Q 010544 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (507)
Q Consensus 100 s~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~f 179 (507)
|+|.|+|+|+.++. +.|.+||+++++++|++|+ .++|++++.++.+++|..+|||.|++.++++||+||.+++++|+|
T Consensus 162 s~V~V~G~v~~~~~-~~~~~EL~v~~i~vlg~a~-~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~f 239 (565)
T PLN02603 162 ASVLVQGTVVSSQG-GKQKVELKVSKIVVVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKF 239 (565)
T ss_pred CEEEEEEEEEecCC-CCccEEEEEeEEEEEECCC-CCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874 5678999999999999998 489999888999999999999999999999999999999999999
Q ss_pred HHhCCcEEEccCeeecCCCCCCcccceeeccccchhh----hhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccc
Q 010544 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADK----LEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAG 255 (507)
Q Consensus 180 l~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 255 (507)
|+++||+||+||+|++++||||+++|.|+|+.+...+ ..++++|+
T Consensus 240 f~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~------------------------------- 288 (565)
T PLN02603 240 FQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKT------------------------------- 288 (565)
T ss_pred HHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccC-------------------------------
Confidence 9999999999999999999999999999886432110 01122221
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCC
Q 010544 256 REAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEH 335 (507)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~ 335 (507)
..|...|+.+||++++||+||||||+|++++|++|||+||||||||+
T Consensus 289 ---------------------------------~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~ 335 (565)
T PLN02603 289 ---------------------------------KDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAEN 335 (565)
T ss_pred ---------------------------------cccccccchhhhCcceeeccCchHHHHHHHhcccceEEEecceeCCC
Confidence 22444577889999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHH
Q 010544 336 SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415 (507)
Q Consensus 336 ~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi 415 (507)
++|+|||+||||||+||+|+|++|+|+++|++|+++++.+.++|.++|++++...+.+.++.|+..+..||+||||.||+
T Consensus 336 s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi 415 (565)
T PLN02603 336 SNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAI 415 (565)
T ss_pred CCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999988877666666777776778899999999999
Q ss_pred HHHHhhhhcCCccccccccccccchHHHHHHHHHHcC-CCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEecc
Q 010544 416 ELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQ-KPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKK 494 (507)
Q Consensus 416 ~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~-~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~G 494 (507)
++|++. +.+++...+||.||+.++|++|++.+++ +|+||+|||++++||||++++|+++++|||||+||++||+||
T Consensus 416 ~iL~~~---~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~~fDLl~p~~gEl~gG 492 (565)
T PLN02603 416 ELLLKA---KKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGG 492 (565)
T ss_pred HHHHHh---ccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeEEEEEEecCceEecCH
Confidence 999764 3345556789999999999999998775 699999999999999999888899999999999998999999
Q ss_pred ccccccccccc
Q 010544 495 FQALDWLLYFI 505 (507)
Q Consensus 495 sqRe~~~~~l~ 505 (507)
|||||+|++|+
T Consensus 493 sqRe~r~e~L~ 503 (565)
T PLN02603 493 SQREERLEYLE 503 (565)
T ss_pred HHHHhhHHHHH
Confidence 99999999874
No 4
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-89 Score=711.67 Aligned_cols=366 Identities=44% Similarity=0.724 Sum_probs=329.0
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc--h-h-cccCCCCcEE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--D-L-GQLVPTGTCV 102 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~--~-~-~~~L~~gs~V 102 (507)
+.+++|+++.. ...+++|+|+|||+++|.+| +++|+.||||||. ||+|+.++.. . + .+.|+.||+|
T Consensus 2 ~~~~~i~di~~------~~~~~~V~v~GWV~~~R~~g--~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~~~~L~~es~v 71 (435)
T COG0017 2 MKRTYIKDIKP------HVGGQEVTVRGWVHNKRDLG--KIIFLVLRDGSGF--IQAVVPKNKVYEELFKAKKLTLESSV 71 (435)
T ss_pred CceeeHHhhhc------cCCCcEEEEEEEeeeecccC--CeEEEEEEcCCcE--EEEEEECCCCcHHHhhhhcCCCccEE
Confidence 45789999983 23349999999999999999 8999999999997 9999986421 1 2 4579999999
Q ss_pred EEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC-hhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHH
Q 010544 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT-LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQ 181 (507)
Q Consensus 103 ~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~-~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~ 181 (507)
.|+|+|++++. +.|++||++++++|++.++ .+|||+++.++ +|+++++|||++|++.++++|++||.|++++|+||+
T Consensus 72 ~V~G~v~~~~~-a~~g~El~v~~i~Vl~~a~-~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~ 149 (435)
T COG0017 72 VVTGIVKASPK-APQGFELQVEKIEVLGEAD-PPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFY 149 (435)
T ss_pred EEEEEEEcCCC-CCCCEEEEEEEEEEeeccC-CCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHH
Confidence 99999999985 7899999999999999996 48999999986 999999999999999999999999999999999999
Q ss_pred hCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhh
Q 010544 182 KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISA 261 (507)
Q Consensus 182 ~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 261 (507)
++||+||+||+|++++|||++++|.|.
T Consensus 150 ~~gF~eV~tP~i~~~~~EGg~elF~v~----------------------------------------------------- 176 (435)
T COG0017 150 ENGFTEVHTPIITASATEGGGELFKVD----------------------------------------------------- 176 (435)
T ss_pred hCCcEEecCceEeccCCCCCceeEEEe-----------------------------------------------------
Confidence 999999999999999999999987663
Q ss_pred hhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCC
Q 010544 262 SVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRH 341 (507)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rH 341 (507)
||++++||+||||||||+++++++|||+|||+||||+++|+||
T Consensus 177 -------------------------------------yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRAE~s~T~RH 219 (435)
T COG0017 177 -------------------------------------YFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRAEKSNTRRH 219 (435)
T ss_pred -------------------------------------ecCcceEEecCHHHHHHHHHHHhCceEEecCceecCCCCCcch
Confidence 6888999999999999999988999999999999999999999
Q ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhh
Q 010544 342 LAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVA 421 (507)
Q Consensus 342 l~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~ 421 (507)
|+||||+|.||+|++++|+|+++|+||+++++.++++|.++|+.+++ +...++. ..+.||+||+|.||+++|++.
T Consensus 220 L~EF~~ld~Emaf~~~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~~---~~~~pf~ritY~eAieiL~~~ 294 (435)
T COG0017 220 LSEFWMLDPEMAFADLNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELKR---PESAPFPRITYKEAIEILEEK 294 (435)
T ss_pred hhhHheecceeccCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhcc---cccCCccEEEHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988865 2222222 125789999999999999753
Q ss_pred hhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecC-CcCeEEEEEEEcCCceEEecccccccc
Q 010544 422 VKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND-DLKTVAAMDVLVPKVTCFFKKFQALDW 500 (507)
Q Consensus 422 ~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~-d~~~~~rFDLl~pgg~EI~~GsqRe~~ 500 (507)
+ ++. ++||+||++++|++|++.++..|+||+|||++++||||+.++ +|+++.+|||++||||||+|||||||+
T Consensus 295 ---~--~e~-~~~GdDl~~e~Er~l~e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~ 368 (435)
T COG0017 295 ---G--FEK-VEWGDDLGTEHERYLGEEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHD 368 (435)
T ss_pred ---C--Ccc-cCCCCccCCHHHHHHHHHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceecccc
Confidence 2 222 789999999999999987766689999999999999998765 459999999999987999999999999
Q ss_pred ccccc
Q 010544 501 LLYFI 505 (507)
Q Consensus 501 ~~~l~ 505 (507)
|++|+
T Consensus 369 ~d~L~ 373 (435)
T COG0017 369 YDLLV 373 (435)
T ss_pred HHHHH
Confidence 99986
No 5
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=4.2e-88 Score=731.19 Aligned_cols=449 Identities=46% Similarity=0.752 Sum_probs=356.9
Q ss_pred ccceehhhhhcCC-------CCC--CCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchh--ccc
Q 010544 27 SDRVLIKSILTRP-------DGG--AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL--GQL 95 (507)
Q Consensus 27 ~~r~~i~~i~~~~-------~~~--~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~--~~~ 95 (507)
..|+.|..+++.+ +.. ....|++|+|+|||+++|++|+++++|++||||+|...+|||++++...+ ...
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~ 131 (586)
T PTZ00425 52 RSRIRICNVLNVPKSEKEFNDNSRKNKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK 131 (586)
T ss_pred ccceeeehhccCccccccccccccccccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc
Confidence 3488888888631 111 24579999999999999999954599999999998778999997653222 246
Q ss_pred CCCCcEEEEEEEEeCCCCC-------CcceeEEEE-----eEEEEeeCC-CCCCCCCCCCCCChhhhccccccccCcHHH
Q 010544 96 VPTGTCVYVEGMLKNPPEG-------TKQKIELRV-----QKVVDVGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTI 162 (507)
Q Consensus 96 L~~gs~V~V~G~v~~~~~g-------~~~~~El~v-----~~i~vls~a-~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~ 162 (507)
|+.|++|.|+|+|..++.. .+|++||++ .+++||+++ ++.+||++++.++.|++|++||||+|++.+
T Consensus 132 l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~ 211 (586)
T PTZ00425 132 CGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFI 211 (586)
T ss_pred CCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHH
Confidence 8999999999999987532 146799998 699999988 456799999889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~ 242 (507)
+++||+||.+.+++|+||+++||+||+||+||+++||||+++|.|+|+.++..+ .++++. +. ++.
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~-~~~~p~-~~------------~~~- 276 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDAD-YRAIPR-VN------------KKN- 276 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccc-cccccc-cc------------ccc-
Confidence 999999999999999999999999999999999999999999999987543111 222221 00 000
Q ss_pred hhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccC
Q 010544 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVS 322 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~ 322 (507)
-.+-|++..+.++... .++.+.+. -..+ -.|..++ .+...++.+||++++||+||||||||++++|++
T Consensus 277 ---~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~--~~~q~~~-~~~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~ 344 (586)
T PTZ00425 277 ---KKGEKREDILNTCNAN-NNNGNSSS-----SNAV--SSPAYPD-QYLIDYKKDFFSKQAFLTVSGQLSLENLCSSMG 344 (586)
T ss_pred ---cccccccccccccccc-cccccccc-----cccc--ccccccc-cccccccccccCcceEEEcCchHHHHHHHhccC
Confidence 0000111122221111 11111110 0000 1233332 134556789999999999999999999999999
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhcccc
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~ 402 (507)
|||+||||||||+++|+|||+||||||+||+|+|++|+|+++|++|+++++.+++.|.++|++++.......++.|+..+
T Consensus 345 rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~ 424 (586)
T PTZ00425 345 DVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNIL 424 (586)
T ss_pred CEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988898876544444556665556
Q ss_pred CCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCcCeEEEEE
Q 010544 403 STPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMD 482 (507)
Q Consensus 403 ~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFD 482 (507)
..||+||||.||+++|++. +.+++...+||.||++++|++|++.++++|+||+|||++++||||+.++|+.++++||
T Consensus 425 ~~pf~rIty~EAi~iL~~~---~~~~~~~~~~G~dL~~e~Er~L~~~~~~~PvFItdyP~~~kPFY~~~~~d~~~v~~fD 501 (586)
T PTZ00425 425 DEDFAKITYTNVIDLLQPY---SDSFEVPVKWGMDLQSEHERFVAEQIFKKPVIVYNYPKDLKAFYMKLNEDQKTVAAMD 501 (586)
T ss_pred CCCCCcCCHHHHHHHHHHh---HHhcCCCCCcccccchHHHHHHHHHhcCCcEEEECCccccCccccCcCCCCCeEEEEe
Confidence 7899999999999999764 2234445789999999999999997678999999999999999998887778999999
Q ss_pred EEcCCceEEeccccccccccccc
Q 010544 483 VLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 483 Ll~pgg~EI~~GsqRe~~~~~l~ 505 (507)
||+||+|||+|||||+|+|++|.
T Consensus 502 LlvpgiGEI~gGsqRe~~~e~L~ 524 (586)
T PTZ00425 502 VLVPKIGEVIGGSQREDNLERLD 524 (586)
T ss_pred EEccCceEEccCCCccccHHHHH
Confidence 99998789999999999999885
No 6
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-88 Score=685.10 Aligned_cols=383 Identities=57% Similarity=0.927 Sum_probs=354.3
Q ss_pred ehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeC
Q 010544 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 31 ~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~ 110 (507)
.+++++...++.....|+++.|.|||+++|.+| +++|++|+||++.+++|||+++. ..+.+..|++|.|+|.+..
T Consensus 4 ~~~~v~~~~~~~~~~~g~~~~i~GWvKsvr~~~--~~~Fl~i~DGs~~~~lQvVv~~~---~~q~la~Gt~i~~~g~l~~ 78 (446)
T KOG0554|consen 4 RSLSVLSGRILGHPRAGDTISIGGWVKSVRKLK--KVTFLDINDGSCPSPLQVVVDSE---QSQLLATGTCISAEGVLKV 78 (446)
T ss_pred eeeeeeccccccCCCCCCceeecchhhhccccc--ceEEEEecCCCCCcceEEEechH---HhhhccccceEEEEeeEEe
Confidence 344444434455667899999999999999999 89999999999999999999994 4677899999999999988
Q ss_pred CCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEcc
Q 010544 111 PPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHT 190 (507)
Q Consensus 111 ~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~T 190 (507)
++ |.++++|+.+++|.+++.+++ .||++++.+++|+||+.+|||.|++.+++++|+||.+..++|.||++++|++|+|
T Consensus 79 ~~-~~~q~iel~~eki~~vG~v~~-~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~t 156 (446)
T KOG0554|consen 79 SK-GAKQQIELNAEKIKVVGTVDE-SYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINT 156 (446)
T ss_pred cc-chheeeeeeeeEEEEEeecCC-CCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecC
Confidence 84 678999999999999999984 4999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHH
Q 010544 191 PIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAK 270 (507)
Q Consensus 191 Pil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (507)
||||++|||||||+|+|+|..
T Consensus 157 PiiTt~DCEGaGE~F~vtt~~----------------------------------------------------------- 177 (446)
T KOG0554|consen 157 PIITTNDCEGAGEVFQVTTLT----------------------------------------------------------- 177 (446)
T ss_pred cEeeccCCCCCcceEEEEecC-----------------------------------------------------------
Confidence 999999999999999998742
Q ss_pred HHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCccccccccc
Q 010544 271 ENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350 (507)
Q Consensus 271 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~ 350 (507)
+++.+||++|+||++|+|||+|.++++++|||.+||+||||+++++|||+||||||.
T Consensus 178 -----------------------d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEa 234 (446)
T KOG0554|consen 178 -----------------------DYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEA 234 (446)
T ss_pred -----------------------cccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHhhhhhhhh
Confidence 145679999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-HHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccc
Q 010544 351 EMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFE 429 (507)
Q Consensus 351 E~af~d-~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~ 429 (507)
|++|++ ++|+|+++|.+++++++.++++|.+++++..++.+++.+++|+..++.+|.+|||+||+++|.+.. .+.|.
T Consensus 235 E~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L~~a~--t~~fk 312 (446)
T KOG0554|consen 235 ELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELLQKAV--TKKFK 312 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHHHHhc--ccccc
Confidence 999999 999999999999999999999999999999999899999999888899999999999999998752 15577
Q ss_pred cccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 430 NKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 430 ~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
.+++||.||+++||++|++.+++.|+||+|||+.++||||+.++++.++.+|||++||+|||+|||+||.+.++|
T Consensus 313 ~~~kwG~~l~~ehe~yL~~~~~~~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe~~~~l 387 (446)
T KOG0554|consen 313 TPPKWGIDLSTEHEKYLVEECFKKPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREERKARL 387 (446)
T ss_pred cCcccccccchhhHHHHHHHhcCCCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchhhHHHH
Confidence 889999999999999999998899999999999999999999998888999999999999999999999885554
No 7
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=8.7e-82 Score=673.08 Aligned_cols=386 Identities=48% Similarity=0.808 Sum_probs=335.6
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc----hhcccCCCCcEEEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVE 105 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~----~~~~~L~~gs~V~V~ 105 (507)
.+|++++. + .....|++|+|+|||+++|.+| |++|++|||+++.+.||+|++++.. ...+.|+.||+|.|+
T Consensus 2 ~~~~~~~~--~-~~~~~g~~v~v~Gwv~~~R~~~--~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~l~~gs~V~v~ 76 (453)
T TIGR00457 2 AAIKDLLQ--Q-VYKFVGDEVTVSGWVRTKRSSK--KIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVSVT 76 (453)
T ss_pred ccHHHHHh--c-chhcCCCEEEEEEEeEEEEcCC--CeEEEEEECCCCCccEEEEEeCCcChHHHHHHHcCCCCcEEEEE
Confidence 36777773 1 2367799999999999999888 8999999999932359999987631 134569999999999
Q ss_pred EEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 010544 106 GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 185 (507)
Q Consensus 106 G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f 185 (507)
|++++++ ++.+++||.++++++||+|.+..+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||
T Consensus 77 G~v~~~~-~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf 155 (453)
T TIGR00457 77 GKVVESP-GKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGF 155 (453)
T ss_pred EEEEcCC-CCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999876 456899999999999999964579998888899999999999999999999999999999999999999999
Q ss_pred EEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHH
Q 010544 186 LYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTE 265 (507)
Q Consensus 186 ~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (507)
+||+||+|+.++|||+++.|.+.+..
T Consensus 156 ~eV~TP~l~~~~~eg~~~~F~v~~~~------------------------------------------------------ 181 (453)
T TIGR00457 156 TWVSPPILTSNDCEGAGELFRVSTDG------------------------------------------------------ 181 (453)
T ss_pred EEecCCeEeecCCCCCCCceEecccc------------------------------------------------------
Confidence 99999999999999999998875310
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCcccc
Q 010544 266 LTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEF 345 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~EF 345 (507)
..+..+||++++||+||||||||++++|++||||||||||||+++++||||||
T Consensus 182 ---------------------------~~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EF 234 (453)
T TIGR00457 182 ---------------------------IDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEF 234 (453)
T ss_pred ---------------------------cccchhccCCccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchh
Confidence 00234589999999999999999988899999999999999999889999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcC
Q 010544 346 WMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEG 425 (507)
Q Consensus 346 tmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~ 425 (507)
|||||||+|+|++|+|+++|+||+++++.+.+.+..+++.++..+....+..++...+.||+||||.||+++|++. +
T Consensus 235 t~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~---~ 311 (453)
T TIGR00457 235 WMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKES---D 311 (453)
T ss_pred ccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhc---C
Confidence 9999999999999999999999999999999888777777665555444455555677899999999999999864 3
Q ss_pred CccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 426 KHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 426 ~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
..++....||.+|+.++|++|++.+..+|+||+|||.+++||||+.++++++++|||||+||++||+|||||+|+|++|.
T Consensus 312 ~~~~~~~~~g~~l~~~~e~~L~~~~~~~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~~g~gEi~~gsere~~~~~l~ 391 (453)
T TIGR00457 312 KNFEYEDFWGDDLQTEHERFLAEEYFKPPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLE 391 (453)
T ss_pred CCCcCCCCCCCCCCcHHHHHHHHHhCCCCEEEECCCcccChhhcccCCCcCceeeeeeccCCceEEeehhccCCCHHHHH
Confidence 33444567999999999999999877889999999999999998777888999999999987579999999999999874
No 8
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.2e-81 Score=666.70 Aligned_cols=383 Identities=52% Similarity=0.849 Sum_probs=333.7
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc--c--hhcccCCCCcEEE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--A--DLGQLVPTGTCVY 103 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~--~--~~~~~L~~gs~V~ 103 (507)
.+++|+++. ..+..|++|+|+|||+++|.+| |++|++|||++|. +|+++..+. . +..+.|+.||+|.
T Consensus 2 ~~~~~~~~~-----~~~~~~~~V~i~G~v~~~R~~g--~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~l~~~s~v~ 72 (450)
T PRK03932 2 MRVSIKDIL-----KGKYVGQEVTVRGWVRTKRDSG--KIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKKLTTGSSVI 72 (450)
T ss_pred CcEEHHHhc-----ccccCCCEEEEEEEEEEEEeCC--CeEEEEEECCCCc--EEEEEEcCCChHHHHHHhcCCCCcEEE
Confidence 457889986 2467899999999999999998 8999999999986 888776542 1 2345699999999
Q ss_pred EEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhC
Q 010544 104 VEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183 (507)
Q Consensus 104 V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~ 183 (507)
|+|++.+++. +.|++||+++++++|+++. ..+|++.+.++.++++++|||++|++.++++|++||.|++++|+||.++
T Consensus 73 v~G~v~~~~~-~~~~~el~~~~i~vl~~~~-~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~ 150 (450)
T PRK03932 73 VTGTVVESPR-AGQGYELQATKIEVIGEDP-EDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNEN 150 (450)
T ss_pred EEEEEEcCCC-CCCCEEEEEEEEEEccCCC-CCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999874 5679999999999999975 5799999888999999999999999999999999999999999999999
Q ss_pred CcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhh
Q 010544 184 GFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASV 263 (507)
Q Consensus 184 ~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 263 (507)
||+||+||+|++++|||+++.|.++++.+ |
T Consensus 151 gf~EV~TP~L~~~~~eg~~~~F~v~~~~~------------~-------------------------------------- 180 (450)
T PRK03932 151 GFVWVDTPIITASDCEGAGELFRVTTLDL------------D-------------------------------------- 180 (450)
T ss_pred CCEEecCCceeccCCCCCCCceEeecccc------------c--------------------------------------
Confidence 99999999999999999999998865310 0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCcc
Q 010544 264 TELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~ 343 (507)
.+.+||++++||+||||||||++++|++||||||||||||+++|+||||
T Consensus 181 -------------------------------~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~ 229 (450)
T PRK03932 181 -------------------------------FSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLA 229 (450)
T ss_pred -------------------------------ccccccCCCcccccCHHHHHHHHHhccCCeEEeeeccccCCCCCccccc
Confidence 1235899999999999999999988999999999999999999999999
Q ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhh
Q 010544 344 EFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVK 423 (507)
Q Consensus 344 EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~ 423 (507)
||||||||++|+|++|+|+++|+||+++++.+.+++.++|++++...+.+..+.++..++.||+||||.||++++++.
T Consensus 230 EFt~lE~e~~~~~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~rity~eA~~~l~~~-- 307 (450)
T PRK03932 230 EFWMIEPEMAFADLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKS-- 307 (450)
T ss_pred cccccceEEeccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceEeEHHHHHHHHHHc--
Confidence 999999999999999999999999999999999888888888776554444444444466899999999999998653
Q ss_pred cCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEeccccccccccc
Q 010544 424 EGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 424 ~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
+.++....+||.+++.++|++|++.++++|+||+|||.+++||||+.++++++++|||||+||.+||++|+||+|+|++
T Consensus 308 -~~~~~~~~~~g~~l~~~~e~~l~~~~~~~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl~~g~~El~~g~~r~~~~~~ 386 (450)
T PRK03932 308 -GKKFEFPVEWGDDLGSEHERYLAEEHFKKPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDV 386 (450)
T ss_pred -CCCcCCCCCcccccChHHHHHHHHHhcCCcEEEECCCcccCcccCcCCCCCCEEEEEEEEcCCCceeCCHHHHhhhHHH
Confidence 4444444589999999999999985678999999999999999977655458999999999977899999999999998
Q ss_pred cc
Q 010544 504 FI 505 (507)
Q Consensus 504 l~ 505 (507)
++
T Consensus 387 l~ 388 (450)
T PRK03932 387 LE 388 (450)
T ss_pred HH
Confidence 74
No 9
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=8e-77 Score=631.48 Aligned_cols=350 Identities=27% Similarity=0.437 Sum_probs=304.9
Q ss_pred CCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCCCcEEEEEEEEeCCCCCCc
Q 010544 42 GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTCVYVEGMLKNPPEGTK 116 (507)
Q Consensus 42 ~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~gs~V~V~G~v~~~~~g~~ 116 (507)
+.+..|++|+|+|||+++|.+| |++|++|||++|. ||+|++.+.. .+...|+.||+|.|+|+|+.++. +.
T Consensus 7 ~~~~~g~~v~i~G~v~~~R~~g--~~~Fi~lrd~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~-~~ 81 (428)
T TIGR00458 7 KPEMDGQEVTFMGWVHEIRDLG--GLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRGIVKIKEK-AP 81 (428)
T ss_pred chhhCCCEEEEEEEEEEEecCC--CcEEEEEEeCCee--EEEEEECCcCCHHHHHHHhCCCCCcEEEEEEEEEecCC-CC
Confidence 4567899999999999999999 8999999999985 9999986532 23456999999999999998763 56
Q ss_pred ceeEEEEeEEEEeeCCCCCCCCCCCCC---CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCee
Q 010544 117 QKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPII 193 (507)
Q Consensus 117 ~~~El~v~~i~vls~a~~~~~Pl~~~~---~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil 193 (507)
|++||++++++|+|+|. .++|++.+. .+.+.+.++|||++|++.++++|++||.|++++|+||.++||+||+||+|
T Consensus 82 ~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L 160 (428)
T TIGR00458 82 GGFEIIPTKIEVINEAK-EPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKL 160 (428)
T ss_pred CcEEEEEeEEEEEecCC-CCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCce
Confidence 79999999999999985 568876554 35677778999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHH
Q 010544 194 TTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENL 273 (507)
Q Consensus 194 ~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (507)
++++|||+++.|+++
T Consensus 161 ~~~~~eg~~~~f~v~----------------------------------------------------------------- 175 (428)
T TIGR00458 161 VASATEGGTELFPIT----------------------------------------------------------------- 175 (428)
T ss_pred ecCCCCCCcceeeeE-----------------------------------------------------------------
Confidence 999999999976542
Q ss_pred HHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccCCCCCCCCccccccccccc
Q 010544 274 AKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEM 352 (507)
Q Consensus 274 ~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~ 352 (507)
||++++||+||||||||++ ++|++|||+||||||||+++++||||||||||||+
T Consensus 176 -------------------------~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~ 230 (428)
T TIGR00458 176 -------------------------YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEM 230 (428)
T ss_pred -------------------------ecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeee
Confidence 6888999999999999976 57899999999999999998899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCcccccc
Q 010544 353 AFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKV 432 (507)
Q Consensus 353 af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~ 432 (507)
+|+|++|+|+++|+||+++++.+.+++..+++.++..+. ....||+||||.||++++++. + ...
T Consensus 231 a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~---------~~~~pf~rity~eA~~~l~~~---g----~~~ 294 (428)
T TIGR00458 231 AFEDHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLE---------KPEGKFVRLTYDEAIEMANAK---G----VEI 294 (428)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccccc---------cCCCCceEEEHHHHHHHHHHc---C----CCC
Confidence 999999999999999999999999888766654432211 135799999999999998653 3 234
Q ss_pred ccccccchHHHHHHHHHHcCCCeEEEecCCCCccceee-ecCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 433 EWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 433 ~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~-~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
.||.+++.++|++|++. ++.|+||+|||++++|||++ ++++|++++|||||+| |+||+||+||+|+|++|.
T Consensus 295 ~~~~~l~~~~E~~l~~~-~~~p~fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~-g~Ei~~g~~r~~~~~~l~ 366 (428)
T TIGR00458 295 GWGEDLSTEAEKALGEE-MDGLYFITDWPTEIRPFYTMPDEDNPEISKSFDLMYR-DLEISSGAQRIHLHDLLV 366 (428)
T ss_pred CCccccchHHHHHHHHH-hCCCEEEEeCchhcCcccccccCCCCCEEEEEEEEeC-CeEEeeCchhcCCHHHHH
Confidence 68889999999999986 48999999999999999965 5567899999999997 679999999999998863
No 10
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.9e-77 Score=632.79 Aligned_cols=360 Identities=30% Similarity=0.487 Sum_probs=312.5
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc----chhcccCCCCcEE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV----ADLGQLVPTGTCV 102 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~----~~~~~~L~~gs~V 102 (507)
+++++|+++. ....|++|+|+|||+++|.+| |++|++|||++|. ||+|++++. .++.+.|+.||+|
T Consensus 2 ~~~~~~~~l~------~~~~g~~V~i~GrV~~~R~~g--k~~Fl~LrD~~g~--iQ~v~~~~~~~~~~~~~~~L~~gs~V 71 (437)
T PRK05159 2 MKRHLTSELT------PELDGEEVTLAGWVHEIRDLG--GIAFLILRDRSGI--IQVVVKKKVDEELFETIKKLKRESVV 71 (437)
T ss_pred CceeEhhhCC------hhhCCCEEEEEEEeEeeecCC--CeEEEEEEcCCcE--EEEEEeCCccHHHHHHHhCCCCCcEE
Confidence 4678888885 466899999999999999999 8999999999985 999998763 1234679999999
Q ss_pred EEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCC---CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHH
Q 010544 103 YVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT---KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (507)
Q Consensus 103 ~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~---~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~f 179 (507)
.|+|+|.+++. ..+++||++++++|||+|. .++|+... ..+.++++++|||++|++.++++|++||.|++++|+|
T Consensus 72 ~v~G~v~~~~~-~~~~~el~~~~i~vls~a~-~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~f 149 (437)
T PRK05159 72 SVTGTVKANPK-APGGVEVIPEEIEVLNKAE-EPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREF 149 (437)
T ss_pred EEEEEEEcCCC-CCCCEEEEEeEEEEEeCCC-CCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 5678999999999999996 46776432 2457888899999999999999999999999999999
Q ss_pred HHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhh
Q 010544 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (507)
Q Consensus 180 l~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 259 (507)
|.++||+||+||+|++++|||+++.|++
T Consensus 150 f~~~gf~EV~TP~L~~~~~eg~~~~f~~---------------------------------------------------- 177 (437)
T PRK05159 150 LYENGFTEIFTPKIVASGTEGGAELFPI---------------------------------------------------- 177 (437)
T ss_pred HHHCCCEEEeCCcccccCCCCCcceEeE----------------------------------------------------
Confidence 9999999999999999999999996544
Q ss_pred hhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHh-hccCcEEEEeeccccCCCCC
Q 010544 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSHT 338 (507)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~-~g~~rVfeI~p~FRaE~~~t 338 (507)
+||++++||+||||||||+++ +|++||||||||||||++++
T Consensus 178 --------------------------------------~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t 219 (437)
T PRK05159 178 --------------------------------------DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNT 219 (437)
T ss_pred --------------------------------------EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCC
Confidence 268889999999999999986 56999999999999999988
Q ss_pred CCCccccccccccccCCC-HHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHH
Q 010544 339 SRHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVEL 417 (507)
Q Consensus 339 ~rHl~EFtmLE~E~af~d-~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~ 417 (507)
+|||||||||||||+|+| ++++|+++|+||+++++.+.+++.+++++++..++ ..+.||+||||.||+++
T Consensus 220 ~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~---------~~~~~f~rit~~eA~~~ 290 (437)
T PRK05159 220 SRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP---------VPETPIPRITYDEAIEI 290 (437)
T ss_pred cccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC---------cCCCCceEeEHHHHHHH
Confidence 899999999999999998 99999999999999999999888777776654321 24579999999999999
Q ss_pred HHhhhhcCCccccccccccccchHHHHHHHHHHcC----CCeEEEecCCCCccceeee-cCCcCeEEEEEEEcCCceEEe
Q 010544 418 LEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQ----KPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVTCFF 492 (507)
Q Consensus 418 l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~----~P~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~pgg~EI~ 492 (507)
+.+. + ...+||.+++.++|+.|++.+.. .|+||+|||++++|||++. ++++++++|||||+| |+||+
T Consensus 291 l~~~---~----~~~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~-g~Ei~ 362 (437)
T PRK05159 291 LKSK---G----NEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFR-GLEIT 362 (437)
T ss_pred HHHc---C----CCCCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEEC-CEEEe
Confidence 9653 2 23568889999999999876532 3899999999999999865 456789999999997 56999
Q ss_pred ccccccccccccc
Q 010544 493 KKFQALDWLLYFI 505 (507)
Q Consensus 493 ~GsqRe~~~~~l~ 505 (507)
||++|++|++++.
T Consensus 363 ~g~~r~~d~~~~~ 375 (437)
T PRK05159 363 SGGQRIHRYDMLV 375 (437)
T ss_pred eCeEEcCCHHHHH
Confidence 9999999999864
No 11
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-74 Score=625.43 Aligned_cols=368 Identities=23% Similarity=0.374 Sum_probs=305.7
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc--c----hhcccCCCCcEE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--A----DLGQLVPTGTCV 102 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~--~----~~~~~L~~gs~V 102 (507)
.+.|++|.. ....|++|+|+|||+++|.+| |++|++|||++|. ||+|+..+. . .+...|+.||+|
T Consensus 65 ~~~i~~l~~-----~~~~g~~V~v~Grv~~~R~~G--k~~Fl~LRd~~~~--iQ~v~~~~~~~~~~~~~~~~~l~~esiV 135 (550)
T PTZ00401 65 FIPVAVLSK-----PELVDKTVLIRARVSTTRKKG--KMAFMVLRDGSDS--VQAMAAVEGDVPKEMIDFIGQIPTESIV 135 (550)
T ss_pred eEEHHHCCc-----cccCCCEEEEEEEEEEEecCC--CeEEEEEEeCCcC--EEEEEECCCccCHHHHHHHhcCCCCCEE
Confidence 488888862 223799999999999999999 8999999999985 999996432 1 245679999999
Q ss_pred EEEEEEeCCCC----CCcceeEEEEeEEEEeeCCCCCCCCCCCCC-----------CChhhhccccccccCcHHHHHHHH
Q 010544 103 YVEGMLKNPPE----GTKQKIELRVQKVVDVGMVDPAKYPIPKTK-----------LTLEFLRDRIPFRPRTNTIAAVAR 167 (507)
Q Consensus 103 ~V~G~v~~~~~----g~~~~~El~v~~i~vls~a~~~~~Pl~~~~-----------~~~e~~r~~~~l~~R~~~~~~~~~ 167 (507)
.|+|+|+..+. .+.|++||++++++|||+|. .++|++.+. .+.++..++||||+|++.++++|+
T Consensus 136 ~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r 214 (550)
T PTZ00401 136 DVEATVCKVEQPITSTSHSDIELKVKKIHTVTESL-RTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFR 214 (550)
T ss_pred EEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCC-CCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHH
Confidence 99999987432 24678999999999999996 467875432 245667789999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHH
Q 010544 168 IRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVA 247 (507)
Q Consensus 168 ~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~ 247 (507)
+||.|++++|+||.++||+||+||+|+.+++||+++.|.|
T Consensus 215 ~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v---------------------------------------- 254 (550)
T PTZ00401 215 LQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL---------------------------------------- 254 (550)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc----------------------------------------
Confidence 9999999999999999999999999999989998887644
Q ss_pred hhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHh-hccCcEEE
Q 010544 248 KLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA-CAVSNVYT 326 (507)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~-~g~~rVfe 326 (507)
+||++++||+||||||||+++ +|++|||+
T Consensus 255 --------------------------------------------------~yf~~~~~L~qSpql~kq~li~~g~~rVfe 284 (550)
T PTZ00401 255 --------------------------------------------------EYFNRFAYLAQSPQLYKQMVLQGDVPRVFE 284 (550)
T ss_pred --------------------------------------------------ccCCCCeecCCCHHHHHHHHHhcCCCCEEE
Confidence 378999999999999999987 47999999
Q ss_pred EeeccccCCCCCCCCccccccccccccCC-CHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchh-----------
Q 010544 327 FGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSC----------- 394 (507)
Q Consensus 327 I~p~FRaE~~~t~rHl~EFtmLE~E~af~-d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~----------- 394 (507)
||||||||+++|+|||||||||||||+|. +|+++|+++|+|+++++..+.+. ..+++.++.+++...
T Consensus 285 I~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~ 363 (550)
T PTZ00401 285 VGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMK 363 (550)
T ss_pred EeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHH
Confidence 99999999999999999999999999986 69999999999999999998876 334544433222111
Q ss_pred -----------------hhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHH---HcCCC
Q 010544 395 -----------------INRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEV---KFQKP 454 (507)
Q Consensus 395 -----------------~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~---~~~~P 454 (507)
.+.+.. ...||+||+|.||+++|++. + .....|+.|+++++|++|++. .++.|
T Consensus 364 ~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~---~---~~~~~~~~dl~~~~E~~L~~~v~~~~~~~ 436 (550)
T PTZ00401 364 ELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTV---L---EEKMAPTDDINTTNEKLLGKLVKERYGTD 436 (550)
T ss_pred hcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHh---c---ccCCCcccccCchHHHHHHHHHHHhcCCC
Confidence 011111 34579999999999999864 2 123467889999999998754 35789
Q ss_pred eEEEe-cCCCCcccee-eecCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 455 VIVYN-YPKGIKAFYM-RLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 455 ~fVtd-yP~~~~Pfy~-~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
+||+| ||.+++|||+ .+++||++++|||||++ |+||+||+||+||+++|.
T Consensus 437 ~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~-G~EI~sG~qR~~d~~~l~ 488 (550)
T PTZ00401 437 FFISDRFPSSARPFYTMECKDDERFTNSYDMFIR-GEEISSGAQRIHDPDLLL 488 (550)
T ss_pred EEEECCCChhhCchhcCcCCCCCCEEEEEEEEeC-CEEEccchhhcCCHHHHH
Confidence 99998 9999999995 55678899999999997 689999999999999874
No 12
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=2e-74 Score=624.61 Aligned_cols=363 Identities=26% Similarity=0.372 Sum_probs=306.8
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-------hhcccCCCCcE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-------DLGQLVPTGTC 101 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-------~~~~~L~~gs~ 101 (507)
++.|++|. ....|++|+|+|||+++|.+| |++|++|||+++. ||+|+..+.. .+...|+.||+
T Consensus 69 ~~~i~~l~------~~~~g~~V~v~Grv~~~R~~g--k~~Fl~Lrd~~~~--iQ~v~~~~~~~~~~~~~~~~~~l~~es~ 138 (530)
T PLN02850 69 WTDVSDLG------EELAGSEVLIRGRVHTIRGKG--KSAFLVLRQSGFT--VQCVVFVSEVTVSKGMVKYAKQLSRESV 138 (530)
T ss_pred EeEhhhcc------hhhCCCEEEEEEEEEEEccCC--CeEEEEEEeCCcC--EEEEEECCccccCHHHHHHHhCCCCCCE
Confidence 46666664 578899999999999999999 7999999999875 9999976531 24567999999
Q ss_pred EEEEEEEeCCCC---CCcceeEEEEeEEEEeeCCCCCCCCCCCCC--------------------CChhhhccccccccC
Q 010544 102 VYVEGMLKNPPE---GTKQKIELRVQKVVDVGMVDPAKYPIPKTK--------------------LTLEFLRDRIPFRPR 158 (507)
Q Consensus 102 V~V~G~v~~~~~---g~~~~~El~v~~i~vls~a~~~~~Pl~~~~--------------------~~~e~~r~~~~l~~R 158 (507)
|.|+|+|+.++. +..+++||+++++.|+|+|. .++|+..+. .+.++..++|||++|
T Consensus 139 V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 139 VDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKAL-ATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCC-CCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999986432 24568999999999999996 468875432 235667789999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHH
Q 010544 159 TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLV 238 (507)
Q Consensus 159 ~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (507)
++.++++||+||.|++++|+||.++||+||+||+|++++|||++++|.+
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------- 266 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------- 266 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee-------------------------------
Confidence 9999999999999999999999999999999999999999998886543
Q ss_pred HHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHh
Q 010544 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA 318 (507)
Q Consensus 239 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~ 318 (507)
+||++++||+||||||||+++
T Consensus 267 -----------------------------------------------------------~yf~~~~~L~qSpql~kq~li 287 (530)
T PLN02850 267 -----------------------------------------------------------DYKGQPACLAQSPQLHKQMAI 287 (530)
T ss_pred -----------------------------------------------------------ccCCcceecCCCHHHHHHHHH
Confidence 478999999999999999975
Q ss_pred -hccCcEEEEeeccccCCCCCCCCccccccccccccCC-CHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhh
Q 010544 319 -CAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCIN 396 (507)
Q Consensus 319 -~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~-d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~ 396 (507)
+|++||||||||||||+++|+|||||||||||||+|. +|+|+|+++|+|+++++..+.+.+..+++.++..++...++
T Consensus 288 ~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~ 367 (530)
T PLN02850 288 CGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLK 367 (530)
T ss_pred HhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhh
Confidence 5899999999999999999999999999999999998 59999999999999999999988887887776554422222
Q ss_pred hhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHH---cCC-CeEEEecCCCCccceee-e
Q 010544 397 RLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVK---FQK-PVIVYNYPKGIKAFYMR-L 471 (507)
Q Consensus 397 ~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~---~~~-P~fVtdyP~~~~Pfy~~-~ 471 (507)
. ..++++++|.||+++|++. |. ...++.|+++++|+.|++.+ ++. ++||+|||..++|||++ .
T Consensus 368 ~-----~~~~~rit~~ea~~~L~~~---g~----~~~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~ 435 (530)
T PLN02850 368 Y-----LPKTLRLTFAEGIQMLKEA---GV----EVDPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPC 435 (530)
T ss_pred h-----cCCcccCCHHHHHHHHHHc---CC----CCCCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhcccc
Confidence 2 2368899999999999764 32 23356789999999998744 344 57789999999999954 5
Q ss_pred cCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 472 NDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 472 ~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
++|+++++|||||++ |+||+||+||+||+++|.
T Consensus 436 ~~d~~~~~~fDl~i~-G~EI~~G~qr~~d~~~l~ 468 (530)
T PLN02850 436 PDDPKYSNSFDVFIR-GEEIISGAQRVHDPELLE 468 (530)
T ss_pred CCCCCeEEEEEEEeC-CEEEeccceecCCHHHHH
Confidence 568899999999997 679999999999999874
No 13
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-70 Score=592.59 Aligned_cols=369 Identities=17% Similarity=0.224 Sum_probs=295.7
Q ss_pred cccccceehhhhhcC-CCCCC---CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc---hh---c
Q 010544 24 HQFSDRVLIKSILTR-PDGGA---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DL---G 93 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~-~~~~~---~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---~~---~ 93 (507)
..|...++++++... .++.. ...|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. .+ .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G--k~~F~~lrD~~g~--iQ~~~~~~~~~~~~~~~~~ 113 (505)
T PRK12445 38 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG--KASFVTLQDVGGR--IQLYVARDSLPEGVYNDQF 113 (505)
T ss_pred CCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC--CcEEEEEEeCCcc--EEEEEECCccchhhHHHHH
Confidence 457788999999642 22221 13478899999999999999 8999999999985 9999986532 12 2
Q ss_pred ccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHH
Q 010544 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIR 169 (507)
Q Consensus 94 ~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~r 169 (507)
+.++.||+|+|+|++.+++. |++||+++++++||+|. .|+|.+.++ .+...++|+||+| ++..+++|++|
T Consensus 114 ~~l~~Gd~V~v~G~~~~t~~---gelel~~~~~~llsk~~---~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~R 187 (505)
T PRK12445 114 KKWDLGDIIGARGTLFKTQT---GELSIHCTELRLLTKAL---RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVR 187 (505)
T ss_pred hcCCCCCEEEEEEEEEecCC---CcEEEEEeEEEEEecCC---CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHH
Confidence 46899999999999999874 59999999999999974 677776554 4666689999998 58899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhh
Q 010544 170 NALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (507)
Q Consensus 170 s~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~ 249 (507)
|.|++++|+||.++||+||+||+|+++ ++||+. +++.|
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~-~gGa~a-~pF~t---------------------------------------- 225 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVI-PGGASA-RPFIT---------------------------------------- 225 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEec-CCCCcc-cceec----------------------------------------
Confidence 999999999999999999999999976 777754 33322
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEe
Q 010544 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~ 328 (507)
|| ++|+.++||++|||||||++ ++|++||||||
T Consensus 226 ---------------~~-------------------------------~~~~~~~yL~~SpELylKrlivgG~~rVfeIg 259 (505)
T PRK12445 226 ---------------HH-------------------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEIN 259 (505)
T ss_pred ---------------cc-------------------------------ccCCcceeeecCHHHHHHHHHhccCCcEEEEe
Confidence 11 24778899999999999986 57899999999
Q ss_pred eccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCcee
Q 010544 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (507)
Q Consensus 329 p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~r 408 (507)
||||||++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+.+.. .+.+. .+ .++.||+|
T Consensus 260 ~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~~~~~~~~--~~~~~-----~i-----~~~~pf~r 326 (505)
T PRK12445 260 RNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKV--TYGEH-----VF-----DFGKPFEK 326 (505)
T ss_pred hhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHHHhcccce--ecCce-----ec-----cCCCCceE
Confidence 99999999 99999999999999999999999999999999999988765431 11111 11 24679999
Q ss_pred eeHHHHHHHHHhh-hhc-C------------Cccccccccccc-cchHHHHHHHHHHcCCCeEEEecCCCCccceeeecC
Q 010544 409 ITYTEAVELLEVA-VKE-G------------KHFENKVEWGID-LASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND 473 (507)
Q Consensus 409 ity~eAi~~l~~~-~~~-~------------~~~~~~~~~g~d-l~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~ 473 (507)
|||.||++.+.+. +.. . ..+.....|+.+ +..+....+++..+.+|+||+|||.+++|||+.+++
T Consensus 327 it~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vE~~l~~P~Fv~dyP~~~splak~~~~ 406 (505)
T PRK12445 327 LTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDV 406 (505)
T ss_pred EEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEECCCchhCcccccCCC
Confidence 9999999999652 100 0 001111233322 445555667777678999999999999999988888
Q ss_pred CcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 474 DLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 474 d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
+|++++|||||++ |.||+||++|++|++++
T Consensus 407 ~p~~~~rFeL~i~-G~Ei~ng~~El~dp~eq 436 (505)
T PRK12445 407 NPEITDRFEFFIG-GREIGNGFSELNDAEDQ 436 (505)
T ss_pred CCCceEEEEEEeC-CEEEcccccccCCHHHH
Confidence 8999999999997 67999999999998764
No 14
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=2.9e-70 Score=589.49 Aligned_cols=365 Identities=21% Similarity=0.297 Sum_probs=289.6
Q ss_pred ccccceehhhhhcC-CCCCC---CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhc-c
Q 010544 25 QFSDRVLIKSILTR-PDGGA---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLG-Q 94 (507)
Q Consensus 25 ~~~~r~~i~~i~~~-~~~~~---~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~-~ 94 (507)
.|...++++++... ..+.. ...|+.|+|+|||+++|.+| |++|++|+|++|. ||+|++++.. .+. +
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g--k~~F~~l~D~~g~--iQ~~~~~~~~~~~~~~~~~~ 102 (496)
T TIGR00499 27 KFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG--KATFITLQDESGQ--IQLYVNKDDLPEDFYEFDEY 102 (496)
T ss_pred CCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC--CeEEEEEEcCCcc--EEEEEECCcCcHHHHHHHHh
Confidence 57778999998642 22221 23488999999999999999 8999999999985 9999987642 122 3
Q ss_pred cCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHHH
Q 010544 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIRN 170 (507)
Q Consensus 95 ~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~rs 170 (507)
.|+.||+|+|+|++.+++. |++||+++++++||+|. .|+|.+.++ .|...++|+||+| ++.++++|++||
T Consensus 103 ~l~~gd~V~v~G~~~~t~~---gelel~~~~i~ilsk~~---~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs 176 (496)
T TIGR00499 103 LLDLGDIIGVTGYPFKTKT---GELSVHVTELQILTKAL---RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRS 176 (496)
T ss_pred cCCCCCEEEEEEEEEECCC---CcEEEEeeEEEEEecCC---CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 4899999999999998874 58999999999999984 677776654 4666679999999 478999999999
Q ss_pred HHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhh
Q 010544 171 ALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLK 250 (507)
Q Consensus 171 ~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~ 250 (507)
.|++++|+||.++||+||+||+|+++ ++||+.. ++.|
T Consensus 177 ~i~~~iR~fl~~~gF~EVeTP~L~~~-~gga~a~-pF~t----------------------------------------- 213 (496)
T TIGR00499 177 KIIKAIRRFLDDRGFIEVETPMLQVI-PGGANAR-PFIT----------------------------------------- 213 (496)
T ss_pred HHHHHHHHHHHHCcCEEEeCCeeecC-CCCccce-eEEe-----------------------------------------
Confidence 99999999999999999999999987 5565431 1211
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEee
Q 010544 251 SDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGP 329 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p 329 (507)
|| ++|+.++||++|||||||++ ++|++|||||||
T Consensus 214 --------------~~-------------------------------~~~~~~~yLriSpELylKrlivgG~~rVfeIg~ 248 (496)
T TIGR00499 214 --------------HH-------------------------------NALDMDLYLRIAPELYLKRLIVGGFEKVYEIGR 248 (496)
T ss_pred --------------ec-------------------------------ccCCCceEEecCHHHHHHHHHhCCCCceEEEec
Confidence 11 13778899999999999987 578999999999
Q ss_pred ccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceee
Q 010544 330 TFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERI 409 (507)
Q Consensus 330 ~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~ri 409 (507)
|||||++ +.||||||||||||++|+||+|+|+++|+||+++++.+.+.+...+ -+.. ..++.||+||
T Consensus 249 ~FRnE~~-~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~~~~~~~~--~~~~----------~~~~~pf~ri 315 (496)
T TIGR00499 249 NFRNEGV-DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLGTTKITY--GELE----------IDFKKPFKRI 315 (496)
T ss_pred ceecCCC-CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHhcccceec--Ccee----------ccCCCCceEE
Confidence 9999999 5799999999999999999999999999999999999987664322 1111 1256799999
Q ss_pred eHHHHHHHHHhhhhcCCcc---------------------ccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccce
Q 010544 410 TYTEAVELLEVAVKEGKHF---------------------ENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY 468 (507)
Q Consensus 410 ty~eAi~~l~~~~~~~~~~---------------------~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy 468 (507)
||.||++++.+.. |.++ .....||..+....+.++.. .+.+|+||+|||.+++||+
T Consensus 316 t~~eai~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~-~l~~P~fv~dyP~~~spla 392 (496)
T TIGR00499 316 TMVEAIKKYDMET--GIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEH-TLIQPTFITHYPAEISPLA 392 (496)
T ss_pred EHHHHHHHHHHhc--CCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHh-ccCCCEEEECCchhcCccc
Confidence 9999999774321 1100 00112333344444544433 3578999999999999998
Q ss_pred eeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 469 MRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 469 ~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
+.++++|++++|||||++ |+|||||++|++|++.+
T Consensus 393 k~~~~~p~~~~rFeL~i~-G~Ei~ng~~El~dp~~q 427 (496)
T TIGR00499 393 KRNPSNPEFTDRFELFIA-GKEIANAFSELNDPLDQ 427 (496)
T ss_pred ccCCCCCCeEEEEEEEeC-CeEEeccccccCCHHHH
Confidence 877788899999999997 67999999999998753
No 15
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-70 Score=589.80 Aligned_cols=366 Identities=21% Similarity=0.299 Sum_probs=289.0
Q ss_pred cccccceehhhhhcC-CCCCC---CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcc
Q 010544 24 HQFSDRVLIKSILTR-PDGGA---GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQ 94 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~-~~~~~---~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~ 94 (507)
..|.++++++++... ..+.. ...++.|+|+|||+++|.+| |++|++|||++|. ||||++++.. ...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g--~~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~ 102 (491)
T PRK00484 27 NKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG--KASFATLQDGSGR--IQLYVSKDDVGEEALEAFK 102 (491)
T ss_pred CCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC--ceEEEEEEcCCcc--EEEEEECCcCCHHHHHHHh
Confidence 456778999999742 11111 12247899999999999999 8999999999985 9999987642 1234
Q ss_pred cCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHHH
Q 010544 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIRN 170 (507)
Q Consensus 95 ~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~rs 170 (507)
.|+.||+|+|+|+|.+++. |++||+++++++||+|. .|+|.+.++ .+...++|+|++| ++.++++|++||
T Consensus 103 ~l~~g~~v~v~G~v~~t~~---ge~el~~~~~~vls~~~---~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs 176 (491)
T PRK00484 103 KLDLGDIIGVEGTLFKTKT---GELSVKATELTLLTKSL---RPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRS 176 (491)
T ss_pred cCCCCCEEEEEEEEEEcCC---CcEEEEEeEEEEEeccC---CCCCcccccccchhhhccceeeehhcCHHHHHHHHHHH
Confidence 5999999999999999874 59999999999999984 556665443 5556678999997 799999999999
Q ss_pred HHHHHHHHHHHhCCcEEEccCeeecCCCCCCcc-cceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhh
Q 010544 171 ALAYATHTFLQKQGFLYIHTPIITTSDCEGAGE-MFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (507)
Q Consensus 171 ~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~-~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~ 249 (507)
.|++++|+||.++||+||+||+|+++ ++||+. .|.+.
T Consensus 177 ~i~~~iR~f~~~~gF~EVeTPiL~~~-~~Ga~a~pF~t~----------------------------------------- 214 (491)
T PRK00484 177 KIISAIRRFLDNRGFLEVETPMLQPI-AGGAAARPFITH----------------------------------------- 214 (491)
T ss_pred HHHHHHHHHHHHCCCEEEECCceecc-CCCccceeeeec-----------------------------------------
Confidence 99999999999999999999999976 666653 33210
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEe
Q 010544 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~ 328 (507)
.+||+.++||+||||||||++ ++|++||||||
T Consensus 215 -----------------------------------------------~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~ 247 (491)
T PRK00484 215 -----------------------------------------------HNALDIDLYLRIAPELYLKRLIVGGFERVYEIG 247 (491)
T ss_pred -----------------------------------------------cccCCCceEeccCHHHHHHHHHhccCCcEEEEe
Confidence 136888999999999999987 57899999999
Q ss_pred eccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCcee
Q 010544 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (507)
Q Consensus 329 p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~r 408 (507)
||||||++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+++ .+++.+..+ .++.||+|
T Consensus 248 ~~FR~E~~-~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~~~~~--~i~~~~~~~----------~~~~pf~r 314 (491)
T PRK00484 248 RNFRNEGI-DTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTT--KVTYQGTEI----------DFGPPFKR 314 (491)
T ss_pred cceecCCC-CCCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc--eEecCCEee----------cCCCCceE
Confidence 99999999 469999999999999999999999999999999999987653 344333221 25679999
Q ss_pred eeHHHHHHHHHhhhhc----------CCcc--ccccc--cccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCC
Q 010544 409 ITYTEAVELLEVAVKE----------GKHF--ENKVE--WGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDD 474 (507)
Q Consensus 409 ity~eAi~~l~~~~~~----------~~~~--~~~~~--~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d 474 (507)
|||.||++.+.+.+.. .+++ ..... ||..+....+. +++..+.+|+||+|||.+++||||.+++|
T Consensus 315 ity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~ve~~~~~P~Fi~dyP~~~~pf~k~~~~~ 393 (491)
T PRK00484 315 LTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEE-FVEPKLIQPTFITDYPVEISPLAKRHRED 393 (491)
T ss_pred EEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH-HhhhhcCCcEEEECCChHHhhhhccCCCC
Confidence 9999999998653210 0011 11111 22112222223 34545678999999999999999988889
Q ss_pred cCeEEEEEEEcCCceEEeccccccccccc
Q 010544 475 LKTVAAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 475 ~~~~~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
+++++|||||++ |.|||||++|++|.+.
T Consensus 394 ~~~~~rFdL~i~-G~Ei~ngy~El~dp~~ 421 (491)
T PRK00484 394 PGLTERFELFIG-GREIANAFSELNDPID 421 (491)
T ss_pred CCeEEEEEEEEC-CEEEecchhhhCCHHH
Confidence 999999999997 6699999999998754
No 16
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=1.7e-69 Score=587.06 Aligned_cols=366 Identities=19% Similarity=0.245 Sum_probs=295.7
Q ss_pred cccccceehhhhhcC-CC--CCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hh---
Q 010544 24 HQFSDRVLIKSILTR-PD--GGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DL--- 92 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~-~~--~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~--- 92 (507)
+.|.++++++++... .. .+....|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. .|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G--k~~F~~LrD~~g~--iQv~~~~~~~~~~~~~~~~~ 157 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG--KLAFYDLRDDGGK--IQLYADKKRLDLDEEEFEKL 157 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC--CeEEEEEecCCcc--EEEEEECccccchhHHHHHH
Confidence 457788999999642 22 23445789999999999999999 8999999999985 9999986532 12
Q ss_pred cccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHH
Q 010544 93 GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARI 168 (507)
Q Consensus 93 ~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~ 168 (507)
...|++||+|+|+|++.+++. |++||.++++++||+|. +|+|.+.++ .+...++|+||++ ++.++++|++
T Consensus 158 ~~~l~~gdiV~V~G~~~~t~~---gelel~~~~i~vLs~~l---~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~ 231 (553)
T PLN02502 158 HSLVDRGDIVGVTGTPGKTKK---GELSIFPTSFEVLTKCL---LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRT 231 (553)
T ss_pred HhCCCCCcEEEEEEEEEecCC---CCEEEEEeEEEEEeccC---CCCCcccccccchhhhccchhhhhhcCHHHHHHHHH
Confidence 245899999999999999875 59999999999999984 677777654 5666678999995 8999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHh
Q 010544 169 RNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAK 248 (507)
Q Consensus 169 rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~ 248 (507)
||.|++++|+||.++||+||+||+|+++ ++||+.. || +|
T Consensus 232 Rs~i~~~iR~fl~~~gF~EVeTPiL~~~-~gGA~a~--------------------pF------------~t-------- 270 (553)
T PLN02502 232 RAKIISYIRRFLDDRGFLEVETPMLNMI-AGGAAAR--------------------PF------------VT-------- 270 (553)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecc-CCCcccc--------------------ce------------ee--------
Confidence 9999999999999999999999999987 5676552 23 11
Q ss_pred hhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEE
Q 010544 249 LKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTF 327 (507)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI 327 (507)
|| ++|+.++||++|||||||++ ++|++|||||
T Consensus 271 ----------------~~-------------------------------n~~~~~~yL~~Spel~lK~L~v~g~~rVfeI 303 (553)
T PLN02502 271 ----------------HH-------------------------------NDLNMDLYLRIATELHLKRLVVGGFERVYEI 303 (553)
T ss_pred ----------------ec-------------------------------ccCCcceeeecCHHHHHHHHHHhccCCEEEE
Confidence 11 25788999999999999976 5799999999
Q ss_pred eeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCce
Q 010544 328 GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFE 407 (507)
Q Consensus 328 ~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~ 407 (507)
|||||||+++ .||||||||||||++|+|++|+|+++|+||+++++.+.+.+. +.+.+..+ .+..||+
T Consensus 304 g~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v~~~~~--~~~~~~~i----------~~~~p~~ 370 (553)
T PLN02502 304 GRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELTGSYK--IKYHGIEI----------DFTPPFR 370 (553)
T ss_pred cCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHHhcccc--cccCCccc----------cCCCCce
Confidence 9999999995 699999999999999999999999999999999999987754 22222111 2567999
Q ss_pred eeeHHHHHHHHHhhhhcC-------------------CccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccce
Q 010544 408 RITYTEAVELLEVAVKEG-------------------KHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY 468 (507)
Q Consensus 408 rity~eAi~~l~~~~~~~-------------------~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy 468 (507)
|+||.|+++.+.+.+... .++.....||..+....+.++.+. +.+|+||+|||..++|||
T Consensus 371 rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~-l~~PtFV~dyP~~~spla 449 (553)
T PLN02502 371 RISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEET-LVQPTFVLDHPVEMSPLA 449 (553)
T ss_pred eccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhh-cCCCEEEECCccccCccc
Confidence 999999999886532110 000112234444555556655553 578999999999999999
Q ss_pred eeecCCcCeEEEEEEEcCCceEEecccccccccc
Q 010544 469 MRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLL 502 (507)
Q Consensus 469 ~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~ 502 (507)
|.++++|++++|||||++ |.|||||+++++|..
T Consensus 450 k~~~~~p~~~erFELfi~-G~Eiangy~ELnDp~ 482 (553)
T PLN02502 450 KPHRSKPGLTERFELFIN-GRELANAFSELTDPV 482 (553)
T ss_pred ccCCCCCCeEEEEEEEeC-CeEEccchhhccCHH
Confidence 988889999999999996 679999999999974
No 17
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-70 Score=549.56 Aligned_cols=365 Identities=26% Similarity=0.399 Sum_probs=315.5
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc--------chhcccCCC
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--------ADLGQLVPT 98 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~--------~~~~~~L~~ 98 (507)
+..+.|+||. .+..|+.|.|+|||+..|..| |++|++||++.. ++|+++..+. ++|...|+.
T Consensus 68 ~~~~~v~dl~------~~~~~~~V~vRgrVhtsr~~G--K~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~is~ 137 (533)
T KOG0556|consen 68 RELTDVSDLD------ESNDGSEVLVRGRVHTSRLKG--KLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGSISK 137 (533)
T ss_pred cceeehhhhh------hhcCCceEEEEEEEeeccccc--eEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhhcCc
Confidence 3445777775 467899999999999999999 899999999975 5999986543 247778999
Q ss_pred CcEEEEEEEEeCCCCC----CcceeEEEEeEEEEeeCCCCCCCCCCCCC--------------------CChhhhccccc
Q 010544 99 GTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKTK--------------------LTLEFLRDRIP 154 (507)
Q Consensus 99 gs~V~V~G~v~~~~~g----~~~~~El~v~~i~vls~a~~~~~Pl~~~~--------------------~~~e~~r~~~~ 154 (507)
||+|.|.|+|++.+.. +.|++||++.++.+||.+. ..+|+.-++ .+.++..++|.
T Consensus 138 ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~-~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRv 216 (533)
T KOG0556|consen 138 ESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIAL-PNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRV 216 (533)
T ss_pred ceEEEEEEEEecCCCcccccccceeEEEEEEEEEEeccc-ccCCeeehhhcccccchhhhcCCccccceeccccccccee
Confidence 9999999999987643 5689999999999999997 578874321 13455668999
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHH
Q 010544 155 FRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEA 234 (507)
Q Consensus 155 l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (507)
||+|+|+++++||+.+.|..++|++|..+||+||+||+|..+.+||++++|.|
T Consensus 217 lDLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v--------------------------- 269 (533)
T KOG0556|consen 217 LDLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV--------------------------- 269 (533)
T ss_pred eecccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE---------------------------
Confidence 99999999999999999999999999999999999999999888888877655
Q ss_pred HHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhH
Q 010544 235 AKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQV 314 (507)
Q Consensus 235 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~l 314 (507)
+||+.++||+||||||+
T Consensus 270 ---------------------------------------------------------------~Yfk~~A~LAQSPQLyK 286 (533)
T KOG0556|consen 270 ---------------------------------------------------------------SYFKQKAYLAQSPQLYK 286 (533)
T ss_pred ---------------------------------------------------------------EeccCcchhhcChHHHH
Confidence 48999999999999999
Q ss_pred HHHhh-ccCcEEEEeeccccCCCCCCCCccccccccccccCCC-HHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCc
Q 010544 315 ETYAC-AVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDK 392 (507)
Q Consensus 315 e~l~~-g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d-~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~ 392 (507)
||+++ +|+|||+|||+||||+|+|+||++||+.||+||+|.. |+++|+.+.+++.+|++.+.++|..+|+.++++++.
T Consensus 287 QMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~ 366 (533)
T KOG0556|consen 287 QMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPF 366 (533)
T ss_pred HHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99876 5999999999999999999999999999999999974 899999999999999999999999999999998875
Q ss_pred hhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHc----CCCeEEEecCCCCccce
Q 010544 393 SCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKF----QKPVIVYNYPKGIKAFY 468 (507)
Q Consensus 393 ~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~----~~P~fVtdyP~~~~Pfy 468 (507)
..++. ..|-.|++|.|++.+|++. |.+ +...+||+++.||+|+..+. .+++++.+||.+++|||
T Consensus 367 e~fkf-----~~~~lrl~~~e~v~mLrea---GvE----~g~~dDlsTe~Ek~LG~lV~eky~tdfyildkyP~avRPFY 434 (533)
T KOG0556|consen 367 EPFKF-----LEPPLRLTFKEGVAMLREA---GVE----MGDEDDLSTESEKKLGQLVREKYDTDFYILDKYPLAVRPFY 434 (533)
T ss_pred ccccc-----CCCceEeehHHHHHHHHHc---Ccc----cCCccccCChhHHHHHHHHHHHhCCcEEEEccCcccccccc
Confidence 55442 2566799999999999875 422 22236899999999987553 47899999999999999
Q ss_pred ee-ecCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 469 MR-LNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 469 ~~-~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
++ .++||+++++||+|+. |.||.+|+||+|+++.|+
T Consensus 435 Tmpd~~~p~ySnSyD~fmR-GeEIlSGAQRIhdpe~L~ 471 (533)
T KOG0556|consen 435 TMPDPENPRYSNSYDFFMR-GEEILSGAQRIHDPELLV 471 (533)
T ss_pred ccCCCCCCCcccchhheec-hhhhhccccccCCHHHHH
Confidence 54 5568889999999995 889999999999999875
No 18
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-69 Score=545.22 Aligned_cols=383 Identities=27% Similarity=0.437 Sum_probs=328.2
Q ss_pred cccccccccccccccccccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeC
Q 010544 8 VDQVATMDLNDDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDK 87 (507)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~ 87 (507)
.++..+|++++|. +.--.+-+.|-+. .++.|+.|+|.||||+.|+++ +++||+||||+|+ ||+|++.
T Consensus 93 le~a~ki~ised~--slp~ak~iki~~s-------~~~r~qrVkv~gWVhrlR~qk--~l~FivLrdg~gf--lqCVl~~ 159 (545)
T KOG0555|consen 93 LEEAKKITISEDK--SLPAAKKIKIYDS-------TENRGQRVKVFGWVHRLRRQK--SLIFIVLRDGTGF--LQCVLSD 159 (545)
T ss_pred HHhhhcccccCCC--CCchhheeeeccc-------ccccCceEEeehhhHhhhhcC--ceEEEEEecCCce--EEEEEcc
Confidence 3566788888876 4444444444443 367899999999999999997 8999999999998 9999998
Q ss_pred Ccch-hc-ccCCCCcEEEEEEEEeCCCCC--CcceeEEEEeEEEEeeCCCCC--CCCCCCCCCChhhhccccccccCcHH
Q 010544 88 DVAD-LG-QLVPTGTCVYVEGMLKNPPEG--TKQKIELRVQKVVDVGMVDPA--KYPIPKTKLTLEFLRDRIPFRPRTNT 161 (507)
Q Consensus 88 ~~~~-~~-~~L~~gs~V~V~G~v~~~~~g--~~~~~El~v~~i~vls~a~~~--~~Pl~~~~~~~e~~r~~~~l~~R~~~ 161 (507)
+... +. -.|..+|.|.|.|++++.|.| +.|+.||.|+-++|++.+.+. ..|+. ...+++.+.++|||-.|...
T Consensus 160 kl~~~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~ 238 (545)
T KOG0555|consen 160 KLCQSYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGEN 238 (545)
T ss_pred hhhhhhccccccccceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechh
Confidence 8753 22 247899999999999999877 468999999999999987643 33443 34677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHh
Q 010544 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKE 241 (507)
Q Consensus 162 ~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~ 241 (507)
.+.++++|+.+.+++|+++.+.||+||.+|.|+...-||++.+
T Consensus 239 ~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTL------------------------------------- 281 (545)
T KOG0555|consen 239 ASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTL------------------------------------- 281 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceE-------------------------------------
Confidence 9999999999999999999999999999999998866665554
Q ss_pred hhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhcc
Q 010544 242 KGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAV 321 (507)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~ 321 (507)
|+.||||.+|||+||+|||||.+..++
T Consensus 282 -----------------------------------------------------FkldYyGEeAyLTQSSQLYLEtclpAl 308 (545)
T KOG0555|consen 282 -----------------------------------------------------FKLDYYGEEAYLTQSSQLYLETCLPAL 308 (545)
T ss_pred -----------------------------------------------------EeecccCchhhccchhHHHHHHhhhhc
Confidence 667899999999999999999999999
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhccccc-chhhhhccCCchhhhhhcc
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFD-DMEFMAKNYDKSCINRLRM 400 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~-~i~~~~~~~~~~~~~~l~~ 400 (507)
++||+|.++||||.|+|+|||+|||++|+|++|.+++|+|+.+|+|++..+..+++.... .|+.++..+ .
T Consensus 309 gdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f---------~ 379 (545)
T KOG0555|consen 309 GDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDF---------K 379 (545)
T ss_pred CceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCC---------C
Confidence 999999999999999999999999999999999999999999999999999999886532 344444333 2
Q ss_pred ccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceee-ecCCcCeEE
Q 010544 401 VASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMR-LNDDLKTVA 479 (507)
Q Consensus 401 ~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~-~~~d~~~~~ 479 (507)
.+..||.||.|.|||+.|++++.. ++-+...++|+||....||.+.+. .+.|+|+++||.++++|||+ +.+|+++++
T Consensus 380 ~P~~PFkRm~Y~dAI~wLke~~vk-~edg~~fefGdDI~eAaER~mtdt-Ig~PIfLtrFpveiKsFYM~rc~dd~~lTE 457 (545)
T KOG0555|consen 380 APKRPFKRMNYSDAIEWLKEHDVK-KEDGTDFEFGDDIPEAAERKMTDT-IGVPIFLTRFPVEIKSFYMKRCEDDPRLTE 457 (545)
T ss_pred CCCCchhcCCHHHHHHHHHhcCCc-CccCcccccccchhhHHHHhhhhh-cCCceEEeeccccccceeeecccCccccce
Confidence 488999999999999999887522 112345689999999999999996 48899999999999999987 567899999
Q ss_pred EEEEEcCCceEEeccccccccccccc
Q 010544 480 AMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 480 rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
+.|+++||+|||+|||+|+.++++|+
T Consensus 458 SvD~LmPnVGEIvGGSMRi~d~eeLl 483 (545)
T KOG0555|consen 458 SVDVLMPNVGEIVGGSMRIDDSEELL 483 (545)
T ss_pred eeeeecCCccccccceeeeccHHHHH
Confidence 99999999999999999999999987
No 19
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=6.2e-67 Score=569.04 Aligned_cols=377 Identities=14% Similarity=0.194 Sum_probs=288.7
Q ss_pred ccccceehhhhhcC-CCCC--CCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc-----chh---c
Q 010544 25 QFSDRVLIKSILTR-PDGG--AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV-----ADL---G 93 (507)
Q Consensus 25 ~~~~r~~i~~i~~~-~~~~--~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~-----~~~---~ 93 (507)
.|...++++++... .++. +...++.|+|+|||+++|.+|+ |++|++|+|.+|. ||||++++. ..| .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~-k~~F~~L~d~~g~--iQv~~~~~~~~~~~~~~~~~~ 183 (585)
T PTZ00417 107 KFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQ-KLRFFDLVGDGAK--IQVLANFAFHDHTKSNFAECY 183 (585)
T ss_pred CCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCC-CCEEEEEEeCCee--EEEEEECCccCCCHHHHHHHH
Confidence 46778999999742 2221 2224567999999999999995 6999999999874 999998652 123 2
Q ss_pred ccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccC-cHHHHHHHHHHHHH
Q 010544 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPR-TNTIAAVARIRNAL 172 (507)
Q Consensus 94 ~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R-~~~~~~~~~~rs~i 172 (507)
+.|+.||+|+|+|.+.+++. |++||.++++++|++|. .++|..-...+.+...++|+|++| ++..+++|++||.|
T Consensus 184 ~~l~~Gd~V~V~G~~~~t~~---gel~i~~~~i~llsk~l-~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~I 259 (585)
T PTZ00417 184 DKIRRGDIVGIVGFPGKSKK---GELSIFPKETIILSPCL-HMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKI 259 (585)
T ss_pred hcCCCCCEEEEEeEEcCCCC---ceEEEEEEEEEEEecCC-CCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHHH
Confidence 46899999999999988764 59999999999999985 345543112345666678999998 78889999999999
Q ss_pred HHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhcc
Q 010544 173 AYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSD 252 (507)
Q Consensus 173 ~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~ 252 (507)
++++|+||.++||+||+||+|+++ +|||++. ++.|
T Consensus 260 i~aiR~Ff~~rGFlEVeTPiL~~~-~GGA~a~-PF~T------------------------------------------- 294 (585)
T PTZ00417 260 INYLRNFLNDRGFIEVETPTMNLV-AGGANAR-PFIT------------------------------------------- 294 (585)
T ss_pred HHHHHHHHHHCCeEEEeCCeeecc-CCcccce-eEEe-------------------------------------------
Confidence 999999999999999999999998 7777763 3322
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeecc
Q 010544 253 KAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTF 331 (507)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~F 331 (507)
||| +++.++||.+|||||||+| ++|++|||||||||
T Consensus 295 ------------~~n-------------------------------~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~F 331 (585)
T PTZ00417 295 ------------HHN-------------------------------DLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVF 331 (585)
T ss_pred ------------ccc-------------------------------CCCcceEEeecHHHHHHHHHHhCCCCEEEEcccc
Confidence 222 3567789999999999987 57899999999999
Q ss_pred ccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeH
Q 010544 332 RAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITY 411 (507)
Q Consensus 332 RaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity 411 (507)
|||++ ++||||||||||||++|+||+|+|+++|+||++++..+.+.........+....... ..+..||+|++|
T Consensus 332 RnE~~-~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~v~g~~~~~~~~~g~~~~~~~-----i~~~~pf~rit~ 405 (585)
T PTZ00417 332 RNEGI-DNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKILYNKDGPEKDPIE-----IDFTPPYPKVSI 405 (585)
T ss_pred cCCCC-CCCccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHHhcCcceeeeccccccccccc-----ccCCCCceeccH
Confidence 99999 579999999999999999999999999999999999887654321111110000000 125679999999
Q ss_pred HHHHHHHHhhhhc-------------------CCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeec
Q 010544 412 TEAVELLEVAVKE-------------------GKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN 472 (507)
Q Consensus 412 ~eAi~~l~~~~~~-------------------~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~ 472 (507)
.||++.+.+.+.. +.++.....||..+....+.++.+.+.++|+||+|||.+++|||+...
T Consensus 406 ~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPLak~~~ 485 (585)
T PTZ00417 406 VEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLAKYHR 485 (585)
T ss_pred HHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCchhhhcC
Confidence 9999977653210 111111123333344444544444433569999999999999998777
Q ss_pred CCcCeEEEEEEEcCCceEEeccccccccccc
Q 010544 473 DDLKTVAAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 473 ~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
+||++++|||||+ +|.||+||+++++|..+
T Consensus 486 ~dp~v~eRFELfi-~G~EiangysELnDp~e 515 (585)
T PTZ00417 486 SKPGLTERLEMFI-CGKEVLNAYTELNDPFK 515 (585)
T ss_pred CCCCeEEeEEeEE-CCEEEccCcchhcCHHH
Confidence 7899999999999 58899999999999765
No 20
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-66 Score=565.43 Aligned_cols=383 Identities=15% Similarity=0.195 Sum_probs=289.2
Q ss_pred cccccccccccceehhhhhcC-CCC--CCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc----
Q 010544 18 DDAVQRHQFSDRVLIKSILTR-PDG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---- 90 (507)
Q Consensus 18 ~~~~~~~~~~~r~~i~~i~~~-~~~--~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---- 90 (507)
-||+ -+.|..+++++++... .++ +....++.|+|+|||+++|.+| |++|++|||++|. ||||++++..
T Consensus 76 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G--k~~F~~LrD~~G~--IQvv~~~~~~~~~~ 150 (659)
T PTZ00385 76 LPAA-YSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG--KIIFVTIRSNGNE--LQVVGQVGEHFTRE 150 (659)
T ss_pred CCCc-cccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC--CeEEEEEEECCce--EEEEEECCccCCHH
Confidence 3443 4577888999999742 222 1222355799999999999999 8999999999986 9999987642
Q ss_pred hh---cccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCC-CC--CC---CChhhhccccccccC-cH
Q 010544 91 DL---GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI-PK--TK---LTLEFLRDRIPFRPR-TN 160 (507)
Q Consensus 91 ~~---~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl-~~--~~---~~~e~~r~~~~l~~R-~~ 160 (507)
.+ .+.|+.||+|+|+|+|.+++. |++||+++++++||++.....|+ |. ++ .+.|.+.++|||++| ++
T Consensus 151 ~~~~~~~~l~~gdiV~V~G~v~~t~~---GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~ 227 (659)
T PTZ00385 151 DLKKLKVSLRVGDIIGADGVPCRMQR---GELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNP 227 (659)
T ss_pred HHHHHHhCCCCCCEEEEEEEEEecCC---ceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCH
Confidence 12 246899999999999998864 69999999999999953112221 21 22 367888899999996 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHH
Q 010544 161 TIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIK 240 (507)
Q Consensus 161 ~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t 240 (507)
.++++|++||.|++++|+||.++||+||+||+|+++.+|+++..|.+
T Consensus 228 ~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t--------------------------------- 274 (659)
T PTZ00385 228 CVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVT--------------------------------- 274 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEe---------------------------------
Confidence 89999999999999999999999999999999998866666665532
Q ss_pred hhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHh-h
Q 010544 241 EKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA-C 319 (507)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~-~ 319 (507)
||| +|+.++||.||||||||+++ +
T Consensus 275 ------------------------~~n-------------------------------~~~~~~yL~~SPELylKrLivg 299 (659)
T PTZ00385 275 ------------------------HHN-------------------------------ANAMDLFLRVAPELHLKQCIVG 299 (659)
T ss_pred ------------------------ecc-------------------------------cCCCCEEecCChHHHHHHHhhc
Confidence 111 36778999999999999774 7
Q ss_pred ccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhc
Q 010544 320 AVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLR 399 (507)
Q Consensus 320 g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~ 399 (507)
|++||||||||||||++ ++||||||||||||++|+|++|+|+++|+||++++..+.+.. .+++....-.+... +
T Consensus 300 G~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v~g~~--~~~~~~~~~~g~~~---~ 373 (659)
T PTZ00385 300 GMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRVNGTT--VVQIYPENAHGNPV---T 373 (659)
T ss_pred ccCCEEEEeceecCCCC-CCCccccccceeeeeecCCHHHHHHHHHHHHHHHHHHhcCCe--eEEeeccccCCCcc---c
Confidence 89999999999999999 589999999999999999999999999999999999987743 23322100000000 0
Q ss_pred cccCCCceeeeHHHHHHHHHhhhhc-CCccc----------cccccccccchH----------HHHHHHHHHcCCCeEEE
Q 010544 400 MVASTPFERITYTEAVELLEVAVKE-GKHFE----------NKVEWGIDLASE----------HERYLTEVKFQKPVIVY 458 (507)
Q Consensus 400 ~~~~~pf~rity~eAi~~l~~~~~~-~~~~~----------~~~~~g~dl~~e----------~Er~L~e~~~~~P~fVt 458 (507)
..+..||+||||.+++..+.+.+.. +.++. ...++|.++..+ .+.++. ..+.+|+||+
T Consensus 374 i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve-~~l~qPtFI~ 452 (659)
T PTZ00385 374 VDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFIT-DRVVEPTFVM 452 (659)
T ss_pred ccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHH-HhhCCcEEEe
Confidence 1245799999977777766554210 00110 011233222211 122222 2347899999
Q ss_pred ecCCCCccceeeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 459 NYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 459 dyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
|||.+++||++.+++||++++|||||++ |.||+||++|++|+.++
T Consensus 453 dyP~e~sPLak~~~~dp~~teRFELfi~-G~EiaNGysELnDp~eQ 497 (659)
T PTZ00385 453 DHPLFMSPLAKEQVSRPGLAERFELFVN-GIEYCNAYSELNDPHEQ 497 (659)
T ss_pred CCccccCcccccCCCCCCeEEEEEEEeC-CeEeeecccccCCHHHH
Confidence 9999999999988889999999999996 78999999999998764
No 21
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.7e-66 Score=594.73 Aligned_cols=367 Identities=18% Similarity=0.197 Sum_probs=293.2
Q ss_pred cccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc------hhcccCC
Q 010544 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVP 97 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~------~~~~~L~ 97 (507)
..|.++++++++.. ...|++|+|+|||+++|.+| |++|++|||++|. ||+|++++.. .+.+.|+
T Consensus 634 ~~~~~~~~~~~~~~------~~~~~~V~v~Grv~~~R~~G--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~~l~ 703 (1094)
T PRK02983 634 VGVPPTHTVAEALD------APTGEEVSVSGRVLRIRDYG--GVLFADLRDWSGE--LQVLLDASRLEQGSLADFRAAVD 703 (1094)
T ss_pred CCCcCccCHHHHHH------hcCCCEEEEEEEEEEEeeCC--CeEEEEEEeCCee--EEEEEECCccchhhHHHHHhcCC
Confidence 34677888988863 36788999999999999999 8999999999975 9999987642 1345689
Q ss_pred CCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCC---ChhhhccccccccC-cHHHHHHHHHHHHHH
Q 010544 98 TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRPR-TNTIAAVARIRNALA 173 (507)
Q Consensus 98 ~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~---~~e~~r~~~~l~~R-~~~~~~~~~~rs~i~ 173 (507)
.||+|+|+|++.+++. |++||++++++++++|. .|+|++.+ +.+...++|||++| ++.++++|++||+|+
T Consensus 704 ~gd~V~v~G~v~~t~~---ge~ei~~~~i~ll~k~~---~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~ 777 (1094)
T PRK02983 704 LGDLVEVTGTMGTSRN---GTLSLLVTSWRLAGKCL---RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVV 777 (1094)
T ss_pred CCCEEEEEEEEEEcCC---CCEEEEEeEEEEEeccC---cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999999875 58999999999999984 67777654 34555678999996 588999999999999
Q ss_pred HHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccc
Q 010544 174 YATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDK 253 (507)
Q Consensus 174 ~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 253 (507)
+++|+||.++||+||+||+|+++.+|++.+.|.+
T Consensus 778 ~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t---------------------------------------------- 811 (1094)
T PRK02983 778 RAVRETLVARGFLEVETPILQQVHGGANARPFVT---------------------------------------------- 811 (1094)
T ss_pred HHHHHHHHHCCCEEEeCCEeeccCCCcccceeEe----------------------------------------------
Confidence 9999999999999999999998765444454422
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccc
Q 010544 254 AGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFR 332 (507)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FR 332 (507)
| .++|+.++||+||||||||++ ++|++||||||||||
T Consensus 812 -----------~-------------------------------~~~~~~~~yLriSPELylKrLivgG~erVFEIg~~FR 849 (1094)
T PRK02983 812 -----------H-------------------------------INAYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFR 849 (1094)
T ss_pred -----------e-------------------------------ecCCCccchhhcChHHHHHHHHhcccCceEEEcceec
Confidence 1 125788899999999999986 478999999999999
Q ss_pred cCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHH
Q 010544 333 AEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412 (507)
Q Consensus 333 aE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~ 412 (507)
||++ +.||||||||||+|++|.||+|+|+++|+||+++++.+.+... +.+-+.... ..+..++.||+||||.
T Consensus 850 nE~~-~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v~~~~~--~~~~~~~~~-----~~~i~~~~pf~rit~~ 921 (1094)
T PRK02983 850 NEGV-DATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAAHGAPV--VMRPDGDGV-----LEPVDISGPWPVVTVH 921 (1094)
T ss_pred CCCC-CCCccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCcE--EeeCCcccc-----ccccccCCCceEEEHH
Confidence 9999 5799999999999999999999999999999999999875431 111110000 0011267899999999
Q ss_pred HHHHHHHhhhhc-------------CCcccccccccc-ccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCCcCeE
Q 010544 413 EAVELLEVAVKE-------------GKHFENKVEWGI-DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDDLKTV 478 (507)
Q Consensus 413 eAi~~l~~~~~~-------------~~~~~~~~~~g~-dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d~~~~ 478 (507)
||++.+.+.+.. ...++...+|+. ++..+.+..+++..+.+|+||+|||.+++||||.+++||+++
T Consensus 922 eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~~P~Fv~dyP~~~spla~~~~~~p~~~ 1001 (1094)
T PRK02983 922 DAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTTFPTFYTDFPTSVSPLTRPHRSDPGLA 1001 (1094)
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEEEECCCcccccccccCCCCCCee
Confidence 999977544210 001111223331 244555556677677899999999999999999888899999
Q ss_pred EEEEEEcCCceEEeccccccccccc
Q 010544 479 AAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 479 ~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
+|||||++ |.||+||+++++|+.+
T Consensus 1002 erFdL~i~-G~Ei~ng~~El~Dp~e 1025 (1094)
T PRK02983 1002 ERWDLVAW-GVELGTAYSELTDPVE 1025 (1094)
T ss_pred EEEEEEEC-CEEEeccccccCCHHH
Confidence 99999997 6799999999998764
No 22
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=2.4e-63 Score=540.77 Aligned_cols=267 Identities=25% Similarity=0.353 Sum_probs=225.4
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch--hcccCCCCcEEEEE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVE 105 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~--~~~~L~~gs~V~V~ 105 (507)
+++++.++. ....|++|+|+|||+++|.+| |++|++|||++|. ||||++++... ..+.|+.||+|.|+
T Consensus 2 rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~G--kl~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLR------TEHLGQTVTLAGWVNRRRDLG--GLIFIDLRDRSGI--VQVVCDPDADALKLAKGLRNEDVVQVK 71 (583)
T ss_pred CceeHhhcc------hhhCCCEEEEEEEEEEEEcCC--CcEEEEEEeCCcc--EEEEEeCCHHHHHHHhcCCCCCEEEEE
Confidence 345665554 467899999999999999999 8999999999986 99999876322 24568999999999
Q ss_pred EEEeCCCC------CCcceeEEEEeEEEEeeCCCCCCCCCCCC-CC-ChhhhccccccccCcHHHHHHHHHHHHHHHHHH
Q 010544 106 GMLKNPPE------GTKQKIELRVQKVVDVGMVDPAKYPIPKT-KL-TLEFLRDRIPFRPRTNTIAAVARIRNALAYATH 177 (507)
Q Consensus 106 G~v~~~~~------g~~~~~El~v~~i~vls~a~~~~~Pl~~~-~~-~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r 177 (507)
|+|.+++. ...|++||.++++++||+|. .+|+... .. +.+...++||||+|++.++++|++||.|++++|
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~--~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR 149 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK--TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVR 149 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHH
Confidence 99987652 14689999999999999985 5666542 22 344444899999999999999999999999999
Q ss_pred HHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchh
Q 010544 178 TFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGRE 257 (507)
Q Consensus 178 ~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 257 (507)
+||.++||+||+||+|++++||||++ |.+++..
T Consensus 150 ~ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~~~---------------------------------------------- 182 (583)
T TIGR00459 150 NFLDQQGFLEIETPMLTKSTPEGARD-YLVPSRV---------------------------------------------- 182 (583)
T ss_pred HHHHHCCCEEEECCeeccCCCCCCcc-eeeeeec----------------------------------------------
Confidence 99999999999999999999999988 6664310
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCce-eeEeechhhhHHHH-hhccCcEEEEeeccccCC
Q 010544 258 AISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQ-AFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEH 335 (507)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~-~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~ 335 (507)
++.. ++|+||||||||++ ++|++||||||||||||+
T Consensus 183 ------------------------------------------~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~ 220 (583)
T TIGR00459 183 ------------------------------------------HKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDED 220 (583)
T ss_pred ------------------------------------------CCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCC
Confidence 1112 24999999999976 578999999999999999
Q ss_pred CCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHH
Q 010544 336 SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415 (507)
Q Consensus 336 ~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi 415 (507)
++++|| ||||||||||+|+|++|+|+++|+||+++++.+.+. .+..||+|+||.||+
T Consensus 221 ~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~----------------------~~~~pf~r~ty~ea~ 277 (583)
T TIGR00459 221 LRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGI----------------------DLKKPFPVMTYAEAM 277 (583)
T ss_pred CCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCceEEEHHHHH
Confidence 989888 999999999999999999999999999999887541 145799999999999
Q ss_pred HHH
Q 010544 416 ELL 418 (507)
Q Consensus 416 ~~l 418 (507)
+.|
T Consensus 278 ~~y 280 (583)
T TIGR00459 278 ERY 280 (583)
T ss_pred HHH
Confidence 998
No 23
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-63 Score=521.30 Aligned_cols=266 Identities=26% Similarity=0.428 Sum_probs=236.4
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCC-cc---hhcccCCCCcEEEEEEEEeCCCC
Q 010544 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKD-VA---DLGQLVPTGTCVYVEGMLKNPPE 113 (507)
Q Consensus 38 ~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~-~~---~~~~~L~~gs~V~V~G~v~~~~~ 113 (507)
|+++..+++|++|+++|||++.|++| +++||+|||.+|. +|||++++ .. ..+..|+.|++|.|+|+|..++.
T Consensus 6 cg~l~~~~vG~~V~L~GWV~r~Rd~G--gliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~e 81 (585)
T COG0173 6 CGELRESHVGQTVTLSGWVHRRRDHG--GLIFIDLRDREGI--VQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARPE 81 (585)
T ss_pred ccccCHHHCCCEEEEEeeeeeccccC--CeEEEEcccCCCe--EEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecCc
Confidence 67778899999999999999999999 8999999999997 99999984 32 23567999999999999999876
Q ss_pred C------CcceeEEEEeEEEEeeCCCCCCCCCCCC-CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcE
Q 010544 114 G------TKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 186 (507)
Q Consensus 114 g------~~~~~El~v~~i~vls~a~~~~~Pl~~~-~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ 186 (507)
+ .+|++||++++|+|||+|.+.++++.+. ..+.|....||+|++|.+.++..+++||+++.++|+||.++||+
T Consensus 82 ~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF~ 161 (585)
T COG0173 82 GTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFL 161 (585)
T ss_pred cccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCe
Confidence 4 5689999999999999997556666554 34555556899999999999999999999999999999999999
Q ss_pred EEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHH
Q 010544 187 YIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTEL 266 (507)
Q Consensus 187 ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (507)
||+||+||.++||||.+ |.|+++.+++.
T Consensus 162 EiETPiLtkSTPEGARD-fLVPSRv~~G~--------------------------------------------------- 189 (585)
T COG0173 162 EIETPILTKSTPEGARD-FLVPSRVHPGK--------------------------------------------------- 189 (585)
T ss_pred EeecCccccCCCccccc-cccccccCCCc---------------------------------------------------
Confidence 99999999999999999 99988755432
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccCCCCCCCCcccc
Q 010544 267 TKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEF 345 (507)
Q Consensus 267 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~t~rHl~EF 345 (507)
||. |.||||+|||+| ++||+|+|||++|||+|+.+.+|+ |||
T Consensus 190 --------------------------------FYA----LPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ-PEF 232 (585)
T COG0173 190 --------------------------------FYA----LPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQ-PEF 232 (585)
T ss_pred --------------------------------eee----cCCCHHHHHHHHHHhcccceeeeeeeecccccccccC-Ccc
Confidence 454 899999999975 789999999999999999999999 999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHH
Q 010544 346 WMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELL 418 (507)
Q Consensus 346 tmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l 418 (507)
||+|+||+|.+-+|+|+++|+|++++++.+.+- .+..||+||+|.||++.|
T Consensus 233 TQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i----------------------~l~~pFprmtY~eAm~~Y 283 (585)
T COG0173 233 TQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI----------------------ELKTPFPRMTYAEAMRRY 283 (585)
T ss_pred eeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC----------------------ccCCCcccccHHHHHHHh
Confidence 999999999999999999999999999986541 155699999999999999
No 24
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-62 Score=514.57 Aligned_cols=364 Identities=22% Similarity=0.305 Sum_probs=289.3
Q ss_pred cccccceehhhhhcC-CCC-CCCCC--CCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc------hhc
Q 010544 24 HQFSDRVLIKSILTR-PDG-GAGLA--GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLG 93 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~-~~~-~~~~~--g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~------~~~ 93 (507)
..|.+.+++.++... .+. .+... ...|+|+|||.++|.+| |++|++|.|++|. ||++++++.. .+.
T Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G--K~~F~~i~d~~gk--iQ~yi~k~~~~~~~~~~~~ 109 (502)
T COG1190 34 NDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG--KASFADLQDGSGK--IQLYVNKDEVGEEVFEALF 109 (502)
T ss_pred CcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC--ceeEEEEecCCce--EEEEEeccccchhhHHHHH
Confidence 345566788888742 110 11122 22499999999999999 8999999999985 9999998753 134
Q ss_pred ccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCCh---hhhccccccccCc-HHHHHHHHHH
Q 010544 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTL---EFLRDRIPFRPRT-NTIAAVARIR 169 (507)
Q Consensus 94 ~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~---e~~r~~~~l~~R~-~~~~~~~~~r 169 (507)
+.++.||+|+|+|.+..+++ |+++|.|+++++|++| ..|+|++++++ |...+.|++++=. +..+.+|..|
T Consensus 110 ~~~dlGDiigv~G~~~~T~~---GelSv~v~~~~lLsKs---L~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~R 183 (502)
T COG1190 110 KKLDLGDIIGVEGPLFKTKT---GELSVSVEELRLLSKS---LRPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKR 183 (502)
T ss_pred hccccCCEEeeeeeeeecCC---CceEEEEEEEeeeccc---CCCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66899999999999999985 5999999999999997 58999999875 4444567777654 6678999999
Q ss_pred HHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhh
Q 010544 170 NALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (507)
Q Consensus 170 s~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~ 249 (507)
|+|+++||+||.++||+||+||+|+.. +|||++. || +|
T Consensus 184 s~ii~~iR~fl~~~gFlEVETP~lq~i-~GGA~Ar--------------------PF------------~T--------- 221 (502)
T COG1190 184 SKIIRAIREFLDDRGFLEVETPMLQPI-PGGAAAR--------------------PF------------IT--------- 221 (502)
T ss_pred HHHHHHHHHHHHHCCCeEecccccccc-CCCcccc--------------------cc------------ee---------
Confidence 999999999999999999999999998 8888885 77 33
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEe
Q 010544 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~ 328 (507)
|||+|+ -..||.++|+|||+++ ++||+|||+||
T Consensus 222 ---------------hhNald-------------------------------~dlyLRIApELyLKRliVGG~erVfEIg 255 (502)
T COG1190 222 ---------------HHNALD-------------------------------MDLYLRIAPELYLKRLIVGGFERVFEIG 255 (502)
T ss_pred ---------------eecccC-------------------------------CceEEeeccHHHHHHHHhcCchhheeec
Confidence 788752 2367888888899876 68899999999
Q ss_pred eccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCcee
Q 010544 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (507)
Q Consensus 329 p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~r 408 (507)
++||||+. +.||||||||||+|+||+||+|+|+++|+|++.+++.+.+.. .+.|-+..++ +++||.|
T Consensus 256 r~FRNEGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~--~v~y~~~~id----------~~~pf~r 322 (502)
T COG1190 256 RNFRNEGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTT--KVTYGGQEID----------FSKPFKR 322 (502)
T ss_pred cccccCCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCe--EEEECCEeEe----------cCCCeee
Confidence 99999999 999999999999999999999999999999999999998743 3544444332 7889999
Q ss_pred eeHHHHHHHHHhhh-hcCCc----------ccccc----cccc--ccchHHHHHHHHHHcCCCeEEEecCCCCccceeee
Q 010544 409 ITYTEAVELLEVAV-KEGKH----------FENKV----EWGI--DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRL 471 (507)
Q Consensus 409 ity~eAi~~l~~~~-~~~~~----------~~~~~----~~g~--dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~ 471 (507)
|++.||++.+.+.+ ....+ ..... .||. -+....|. +++..+-+|+||+|||.++|||++++
T Consensus 323 i~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~-~vE~~liqPTFv~d~P~eiSPLak~~ 401 (502)
T COG1190 323 ITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEE-LVEAKLIQPTFVTDHPVEISPLAKRH 401 (502)
T ss_pred eehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHH-HhhhhhcCCceeecCccccCccccCC
Confidence 99999999887752 11100 01111 1322 12222232 34444568999999999999999999
Q ss_pred cCCcCeEEEEEEEcCCceEEecccccccc
Q 010544 472 NDDLKTVAAMDVLVPKVTCFFKKFQALDW 500 (507)
Q Consensus 472 ~~d~~~~~rFDLl~pgg~EI~~GsqRe~~ 500 (507)
+++|++++|||||+ +|.|||||+....|
T Consensus 402 ~~~p~~teRFElfi-~g~EiaNaysELND 429 (502)
T COG1190 402 RSNPGLTERFELFI-GGKEIANAYSELND 429 (502)
T ss_pred CCCcchhhhheeee-ccEEeeeccchhcC
Confidence 99999999999999 68999999987665
No 25
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-59 Score=514.48 Aligned_cols=269 Identities=25% Similarity=0.403 Sum_probs=227.8
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc--hhcccCCCCcEEEE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVYV 104 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~--~~~~~L~~gs~V~V 104 (507)
++++++.++. ..+.|++|+|+|||+++|.+| +++|++|||++|. +|+|+++... +..+.|+.||+|.|
T Consensus 3 ~r~~~~~~l~------~~~~g~~V~l~GwV~~~R~~g--~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELR------ESHVGQTVTLCGWVHRRRDHG--GLIFIDLRDREGI--VQVVFDPDAEAFEVAESLRSEYVIQV 72 (588)
T ss_pred ccceeHHHhh------HHhCCCEEEEEEEEEEEEeCC--CeEEEEEEeCCce--EEEEEeCCHHHHHHHhCCCCCCEEEE
Confidence 4567777775 367899999999999999999 8999999999986 9999986311 13457999999999
Q ss_pred EEEEeCCCCC------CcceeEEEEeEEEEeeCCCCCCCCCC--CC-CCChhhhccccccccCcHHHHHHHHHHHHHHHH
Q 010544 105 EGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIP--KT-KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYA 175 (507)
Q Consensus 105 ~G~v~~~~~g------~~~~~El~v~~i~vls~a~~~~~Pl~--~~-~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~ 175 (507)
+|+|.+++.+ .+|++||.++++++||+|. ++|++ ++ ..+.+...++||||+|++.++++|++||.|+++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~--~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~ 150 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK--TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSA 150 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC--CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHH
Confidence 9999987622 2578999999999999996 35543 22 234555558999999999999999999999999
Q ss_pred HHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccc
Q 010544 176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAG 255 (507)
Q Consensus 176 ~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 255 (507)
+|+||.++||+||+||+|+.++||||++ |.+++..
T Consensus 151 iR~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~~-------------------------------------------- 185 (588)
T PRK00476 151 IRNFLDDNGFLEIETPILTKSTPEGARD-YLVPSRV-------------------------------------------- 185 (588)
T ss_pred HHHHHHHCCCEEEECCeeecCCCCCCcc-ceecccc--------------------------------------------
Confidence 9999999999999999999999999988 7775310
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccC
Q 010544 256 REAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAE 334 (507)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE 334 (507)
+.+..+||+||||+|||++ ++|++||||||||||||
T Consensus 186 -------------------------------------------~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E 222 (588)
T PRK00476 186 -------------------------------------------HPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDE 222 (588)
T ss_pred -------------------------------------------cCCceeecCCCHHHHHHHHHhcccCceEEEeceeecC
Confidence 1233357999999999976 57899999999999999
Q ss_pred CCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHH
Q 010544 335 HSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEA 414 (507)
Q Consensus 335 ~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eA 414 (507)
+++++||+ |||||||||+|++++|+|+++|+||+++++.+.+. .+..||+|+||.||
T Consensus 223 ~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~----------------------~~~~pf~r~ty~ea 279 (588)
T PRK00476 223 DLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGV----------------------DLPTPFPRMTYAEA 279 (588)
T ss_pred CCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCc----------------------cCCCCceEEEHHHH
Confidence 99999997 99999999999999999999999999999887531 13468999999999
Q ss_pred HHHH
Q 010544 415 VELL 418 (507)
Q Consensus 415 i~~l 418 (507)
++.|
T Consensus 280 ~~~y 283 (588)
T PRK00476 280 MRRY 283 (588)
T ss_pred HHHH
Confidence 9988
No 26
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.5e-59 Score=517.58 Aligned_cols=264 Identities=22% Similarity=0.341 Sum_probs=223.0
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCCCcEEEEEEEEeCCC
Q 010544 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 38 ~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
|++++.+..|++|+|+|||+++|++| +++|++|||++|. ||||++++.. .....|+.||+|.|+|+|..++
T Consensus 9 cg~l~~~~~g~~V~l~GWV~~~R~~G--~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~L~~EsvV~V~G~v~~r~ 84 (706)
T PRK12820 9 CGHLSLDDTGREVCLAGWVDAFRDHG--ELLFIHLRDRNGF--IQAVFSPEAAPADVYELAASLRAEFCVALQGEVQKRL 84 (706)
T ss_pred cccCChhhCCCEEEEEEEEEEEEcCC--CcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhcCCCCCEEEEEeEEeccC
Confidence 78888899999999999999999999 8999999999986 9999986531 1245799999999999999864
Q ss_pred CC------CcceeEEEEeEEEEeeCCCCCCCCCCCCC------------CChhhhccccccccCcHHHHHHHHHHHHHHH
Q 010544 113 EG------TKQKIELRVQKVVDVGMVDPAKYPIPKTK------------LTLEFLRDRIPFRPRTNTIAAVARIRNALAY 174 (507)
Q Consensus 113 ~g------~~~~~El~v~~i~vls~a~~~~~Pl~~~~------------~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~ 174 (507)
.+ ..|++||.+++++||++|.+.++|++++. .+.+.+.++|||++|++.++++|++||.|++
T Consensus 85 ~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~ 164 (706)
T PRK12820 85 EETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIK 164 (706)
T ss_pred ccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecCCHHHHHHHHHHHHHHH
Confidence 22 24789999999999999864455554432 2344455799999999999999999999999
Q ss_pred HHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhcccc
Q 010544 175 ATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKA 254 (507)
Q Consensus 175 ~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 254 (507)
++|+||.++||+||+||+|+.++||||++ |.+++.
T Consensus 165 ~iR~fl~~~gFiEVeTPiL~~s~~eGAr~-~~~p~~-------------------------------------------- 199 (706)
T PRK12820 165 CARDFLDSRGFLEIETPILTKSTPEGARD-YLVPSR-------------------------------------------- 199 (706)
T ss_pred HHHHHHHHCCCEEEeCCccccCCCCCCcc-eEEeee--------------------------------------------
Confidence 99999999999999999999999999988 444321
Q ss_pred chhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCcee-eEeechhhhHHHH-hhccCcEEEEeeccc
Q 010544 255 GREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA-FLTVSGQLQVETY-ACAVSNVYTFGPTFR 332 (507)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~-yL~~S~Ql~le~l-~~g~~rVfeI~p~FR 332 (507)
++..++ +|+||||||||++ ++|++||||||||||
T Consensus 200 --------------------------------------------~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR 235 (706)
T PRK12820 200 --------------------------------------------IHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFR 235 (706)
T ss_pred --------------------------------------------cCCCcceecCCCHHHHHHHHHhccCCcEEEEechhc
Confidence 111223 4999999999986 578999999999999
Q ss_pred cCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHH
Q 010544 333 AEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412 (507)
Q Consensus 333 aE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~ 412 (507)
||+++++|| ||||||||||+|+|++|+|+++|+||+++++ +. +. .+..||+||||.
T Consensus 236 ~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~v~~-~~----------~~------------~~~~pf~r~ty~ 291 (706)
T PRK12820 236 DEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTARMFA-IG----------GI------------ALPRPFPRMPYA 291 (706)
T ss_pred CCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHHHHH-hc----------Cc------------CCCCCceEEEHH
Confidence 999988887 9999999999999999999999999999985 11 00 145699999999
Q ss_pred HHHHHH
Q 010544 413 EAVELL 418 (507)
Q Consensus 413 eAi~~l 418 (507)
||++.|
T Consensus 292 eA~~~y 297 (706)
T PRK12820 292 EAMDTT 297 (706)
T ss_pred HHHHHh
Confidence 999998
No 27
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.5e-59 Score=511.56 Aligned_cols=265 Identities=24% Similarity=0.353 Sum_probs=224.8
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc----hhcccCCCCcEEEEEEEEeCCCC
Q 010544 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVEGMLKNPPE 113 (507)
Q Consensus 38 ~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~----~~~~~L~~gs~V~V~G~v~~~~~ 113 (507)
|++++..+.|++|+|+|||+++|++| +++|++|||++|. +|||++++.. ...+.|+.||+|.|+|+|..++.
T Consensus 63 cg~l~~~~~gk~V~l~GWV~~~R~~G--~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~L~~esvV~V~G~V~~r~~ 138 (652)
T PLN02903 63 CGALSVNDVGSRVTLCGWVDLHRDMG--GLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANRLRNEYVVAVEGTVRSRPQ 138 (652)
T ss_pred hhhcchhhCCCEEEEEEEEEEEecCC--CcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 66677789999999999999999999 8999999999986 9999986531 12357999999999999997632
Q ss_pred C------CcceeEEEEeEEEEeeCCCCCCCCC--CC-----CCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHH
Q 010544 114 G------TKQKIELRVQKVVDVGMVDPAKYPI--PK-----TKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFL 180 (507)
Q Consensus 114 g------~~~~~El~v~~i~vls~a~~~~~Pl--~~-----~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl 180 (507)
+ ..|++||++++++|||+|. .++|+ .. ...+.+.++++||||+|++.++++|++||.|++++|+||
T Consensus 139 ~~~n~~~~tGeiEl~~~~i~VL~~a~-~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~Rs~i~~~iR~fl 217 (652)
T PLN02903 139 ESPNKKMKTGSVEVVAESVDILNVVT-KSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYL 217 (652)
T ss_pred cCcCCCCCCCCEEEEEeEEEEEecCC-CCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3478999999999999984 34454 32 125677788999999999999999999999999999999
Q ss_pred Hh-CCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhh
Q 010544 181 QK-QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (507)
Q Consensus 181 ~~-~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 259 (507)
.+ +||+||+||+|+.++||||++ |.+++..
T Consensus 218 ~~~~gFiEVeTPiL~~st~eGard-f~v~~~~------------------------------------------------ 248 (652)
T PLN02903 218 EDVHGFVEIETPILSRSTPEGARD-YLVPSRV------------------------------------------------ 248 (652)
T ss_pred HhcCCeEEEECCeeccCCCCCCcc-cEEeeec------------------------------------------------
Confidence 97 999999999999999999998 4443210
Q ss_pred hhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccCCCCC
Q 010544 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHT 338 (507)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~t 338 (507)
..+..+||+||||||||++ ++|++||||||||||||++++
T Consensus 249 ---------------------------------------~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t 289 (652)
T PLN02903 249 ---------------------------------------QPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRA 289 (652)
T ss_pred ---------------------------------------CCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCC
Confidence 0122246999999999976 578999999999999999989
Q ss_pred CCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHH
Q 010544 339 SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELL 418 (507)
Q Consensus 339 ~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l 418 (507)
+|| ||||||||||+|+|++|+|+++|+||+++++.+.+. .+..||+||||.||++.|
T Consensus 290 ~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~~~----------------------~~~~PF~rity~eA~~~y 346 (652)
T PLN02903 290 DRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIKGV----------------------QLPNPFPRLTYAEAMSKY 346 (652)
T ss_pred Ccc-cceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCCCceEEEHHHHHHHH
Confidence 888 999999999999999999999999999999876531 134699999999999998
No 28
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=9e-59 Score=477.13 Aligned_cols=261 Identities=40% Similarity=0.655 Sum_probs=228.6
Q ss_pred CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcC
Q 010544 144 LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIK 223 (507)
Q Consensus 144 ~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~ 223 (507)
+++++++++|||++|++..++++++||.|++++|+||.++||+||+||+|+.++|||+++.|
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f------------------ 63 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELF------------------ 63 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcc------------------
Confidence 46788999999999999999999999999999999999999999999999999999887753
Q ss_pred CCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCce
Q 010544 224 NPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQ 303 (507)
Q Consensus 224 ~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~ 303 (507)
+.+||+++
T Consensus 64 ------------------------------------------------------------------------~~~~~~~~ 71 (322)
T cd00776 64 ------------------------------------------------------------------------KVSYFGKP 71 (322)
T ss_pred ------------------------------------------------------------------------ccccCCCc
Confidence 23479999
Q ss_pred eeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCccccccccccccCC-CHHHHHHHHHHHHHHHHHHhhcccccc
Q 010544 304 AFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDD 382 (507)
Q Consensus 304 ~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~-d~~dlm~~~E~li~~i~~~v~~~~~~~ 382 (507)
+||++|||||||++++|++|||+||||||||++++.||||||||||||++|+ |++|+|+++|+||+++++.+.+.+..+
T Consensus 72 ~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~ 151 (322)
T cd00776 72 AYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKE 151 (322)
T ss_pred ceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999987799999999999999998999999999999999999 999999999999999999999988777
Q ss_pred hhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCC
Q 010544 383 MEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPK 462 (507)
Q Consensus 383 i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~ 462 (507)
++.++ .++ .+...+..||+||||.||++++.+... . ....||.+++.++|++|++.+.++|+||+|||.
T Consensus 152 ~~~~~-~~~-----~~~~~~~~~~~rit~~eA~~~l~~~~~---~--~~~~~~~~l~~~~e~~l~~~~~~~p~fi~~~P~ 220 (322)
T cd00776 152 LELVN-QLN-----RELLKPLEPFPRITYDEAIELLREKGV---E--EEVKWGEDLSTEHERLLGEIVKGDPVFVTDYPK 220 (322)
T ss_pred Hhhhh-ccC-----cccccCCCCceEEEHHHHHHHHHHcCC---C--CCCCccchhcHHHHHHHHHHhCCCcEEEECCcc
Confidence 66531 111 111234679999999999999986521 1 135689999999999999875589999999999
Q ss_pred CCccceeeec-CCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 463 GIKAFYMRLN-DDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 463 ~~~Pfy~~~~-~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
+++|||++.+ ++|++++|||||+|||+||+||++|++|++++.
T Consensus 221 ~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~ 264 (322)
T cd00776 221 EIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELE 264 (322)
T ss_pred ccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHH
Confidence 9999998754 567899999999986689999999999999874
No 29
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-59 Score=477.81 Aligned_cols=373 Identities=18% Similarity=0.270 Sum_probs=288.9
Q ss_pred cccccceehhhhhcC---CCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc----hh---c
Q 010544 24 HQFSDRVLIKSILTR---PDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DL---G 93 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~---~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~----~~---~ 93 (507)
+.|...++|-++... ...++...+..|+|+|||+++|.+|+ |++|++|++++. +|||+++.+.. +| .
T Consensus 78 hkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGs-KL~Fydl~~~g~--klQvm~~~~~~~~~~~F~~~~ 154 (560)
T KOG1885|consen 78 HKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGS-KLVFYDLHGDGV--KLQVMANAKKITSEEDFEQLH 154 (560)
T ss_pred chhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCC-ceEEEEEecCCe--EEEEEEehhhcCCHHHHHHHH
Confidence 566677888887642 23345566778999999999999998 899999999864 69999997762 23 4
Q ss_pred ccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHH
Q 010544 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIR 169 (507)
Q Consensus 94 ~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~r 169 (507)
+.|++||+|+|.|.+.+++. |+++|.+.++.+||+|. .|+|.+... .|..-+.|++|+- ++.++..|++|
T Consensus 155 ~~lkrGDiig~~G~pgrt~~---gELSi~~~~~~lLspcL---h~lP~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~R 228 (560)
T KOG1885|consen 155 KFLKRGDIIGVSGYPGRTKS---GELSIIPNEIILLSPCL---HMLPHEHFGLKDKETRYRKRYLDLILNPEVRDRFRIR 228 (560)
T ss_pred hhhhccCEEeeecCCCcCCC---ceEEEeecchheecchh---ccCChhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 56999999999999999875 49999999999999995 777765443 4554456777775 46689999999
Q ss_pred HHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhh
Q 010544 170 NALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (507)
Q Consensus 170 s~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~ 249 (507)
++|+..||.||+++||+||+||+|... +|||.+. || ||
T Consensus 229 akII~~iRkfld~rgFlEVETPmmn~i-aGGA~Ak--------------------PF------------IT--------- 266 (560)
T KOG1885|consen 229 AKIISYIRKFLDSRGFLEVETPMMNMI-AGGATAK--------------------PF------------IT--------- 266 (560)
T ss_pred HHHHHHHHHHhhhcCceEecchhhccc-cCccccC--------------------ce------------ee---------
Confidence 999999999999999999999999998 7888875 77 45
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEe
Q 010544 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~ 328 (507)
|||.| +...||.++|+||+++| ++|++||||||
T Consensus 267 ---------------~hndl-------------------------------dm~LylRiAPEL~lK~LvVGGldrVYEIG 300 (560)
T KOG1885|consen 267 ---------------HHNDL-------------------------------DMDLYLRIAPELYLKMLVVGGLDRVYEIG 300 (560)
T ss_pred ---------------ccccc-------------------------------CcceeeeechHHHHHHHHhccHHHHHHHH
Confidence 66764 22356667777778776 68899999999
Q ss_pred eccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCcee
Q 010544 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (507)
Q Consensus 329 p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~r 408 (507)
+.||||+. +.+||||||.+|+||||+||+|+|+++|+|++.+++.+.+++. |.|....- ....++..++.||+|
T Consensus 301 r~FRNEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~mv~~i~G~~~--i~y~p~~~---~~~~~eldf~~pfrr 374 (560)
T KOG1885|consen 301 RQFRNEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGMVKNITGSYK--ITYHPNGP---EEPELELDFTRPFRR 374 (560)
T ss_pred HHhhhcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCcee--EeecCCCC---CCCceeeeccCCeee
Confidence 99999999 9999999999999999999999999999999999999988753 54443211 112345568999999
Q ss_pred eeHHHHHHHHHhhhh-cCCcccc--ccccccccchHH----------HH---HHHHH----HcCCCeEEEecCCCCccce
Q 010544 409 ITYTEAVELLEVAVK-EGKHFEN--KVEWGIDLASEH----------ER---YLTEV----KFQKPVIVYNYPKGIKAFY 468 (507)
Q Consensus 409 ity~eAi~~l~~~~~-~~~~~~~--~~~~g~dl~~e~----------Er---~L~e~----~~~~P~fVtdyP~~~~Pfy 468 (507)
|++-+.++.-.+.+- .+..++. ..++..++...+ -+ .|+.. .+.+|+||.|||..|||++
T Consensus 375 i~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~~hP~imSPLA 454 (560)
T KOG1885|consen 375 IEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFIIDHPQIMSPLA 454 (560)
T ss_pred eeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEcCCchhcCccc
Confidence 999999987765431 1111110 000001111000 01 12222 2458999999999999999
Q ss_pred eeecCCcCeEEEEEEEcCCceEEecccccccc
Q 010544 469 MRLNDDLKTVAAMDVLVPKVTCFFKKFQALDW 500 (507)
Q Consensus 469 ~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~ 500 (507)
+.+...+++++|||||+ ++.||||.+..+.|
T Consensus 455 K~hrs~~glteRFElFi-~~kEicNAYtElNd 485 (560)
T KOG1885|consen 455 KYHRSKAGLTERFELFI-AGKEICNAYTELND 485 (560)
T ss_pred cccccccchhhHHHHhh-hhHHHhhhhhhhcC
Confidence 98888899999999999 58899999887665
No 30
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=9.3e-57 Score=464.29 Aligned_cols=261 Identities=25% Similarity=0.335 Sum_probs=224.4
Q ss_pred ChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCC
Q 010544 145 TLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKN 224 (507)
Q Consensus 145 ~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~ 224 (507)
+.+...+++++++|++.++++|++||.|++++|+||.++||+||+||+|++++|+|.+.- + . .
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g---------~-------~-~ 71 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLG---------S-------D-L 71 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcc---------c-------c-C
Confidence 567777899999999999999999999999999999999999999999999988865441 0 0 0
Q ss_pred CCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCcee
Q 010544 225 PPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQA 304 (507)
Q Consensus 225 p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~ 304 (507)
|+ ..+..+||++++
T Consensus 72 ~~------------------------------------------------------------------~~~~~~~~~~~~ 85 (335)
T PRK06462 72 PV------------------------------------------------------------------KQISIDFYGVEY 85 (335)
T ss_pred Cc------------------------------------------------------------------cccccccCCCce
Confidence 11 123456899999
Q ss_pred eEeechhhhHHHHhhccCcEEEEeeccccCCCCC--CCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccc
Q 010544 305 FLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHT--SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDD 382 (507)
Q Consensus 305 yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t--~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~ 382 (507)
||++|||||||++++|++|||+||||||||++++ +||||||||||||++|.|++|+|+++|+||+++++.+.+++.++
T Consensus 86 yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 86 YLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred eeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999977 69999999999999999999999999999999999999988877
Q ss_pred hhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCC
Q 010544 383 MEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPK 462 (507)
Q Consensus 383 i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~ 462 (507)
|+.++..++ .++.||+||||.||+++++.. +. ...++.+++.++|++|.+. +++|+||+|||.
T Consensus 166 i~~~~~~~~---------~~~~p~~rit~~eA~~~l~~~---~~----~~~~~~~l~~~~E~~l~~~-~~~p~fi~~yP~ 228 (335)
T PRK06462 166 LEFFGRDLP---------HLKRPFKRITHKEAVEILNEE---GC----RGIDLEELGSEGEKSLSEH-FEEPFWIIDIPK 228 (335)
T ss_pred HHhcCCccc---------cCCCCCeEEEHHHHHHHHHhc---CC----CcchHHHHhHHHHHHHHHH-hCCCEEEECCCh
Confidence 776654321 246799999999999998653 21 1234678889999999875 489999999999
Q ss_pred CCccceeee-cCCcCeEEEEEEEcC-CceEEeccccccccccccc
Q 010544 463 GIKAFYMRL-NDDLKTVAAMDVLVP-KVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 463 ~~~Pfy~~~-~~d~~~~~rFDLl~p-gg~EI~~GsqRe~~~~~l~ 505 (507)
+++|||++. ++++++++|||||+| |++||++|++|+|+|++|.
T Consensus 229 ~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~ 273 (335)
T PRK06462 229 GSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIV 273 (335)
T ss_pred hhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHH
Confidence 999999875 457789999999998 7899999999999999874
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=8.6e-57 Score=464.74 Aligned_cols=259 Identities=34% Similarity=0.505 Sum_probs=211.9
Q ss_pred hhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCC
Q 010544 146 LEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNP 225 (507)
Q Consensus 146 ~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p 225 (507)
.|+++++|||++|++.++++|++||.|++++|+||.++||+||+||+|++++|||+++.|.|.+.
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~--------------- 66 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSE--------------- 66 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEES---------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccc---------------
Confidence 47789999999999999999999999999999999999999999999999999999998887530
Q ss_pred CCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceee
Q 010544 226 PPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAF 305 (507)
Q Consensus 226 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~y 305 (507)
..+||++++|
T Consensus 67 ----------------------------------------------------------------------~~~~~~~~~~ 76 (335)
T PF00152_consen 67 ----------------------------------------------------------------------PGKYFGEPAY 76 (335)
T ss_dssp ----------------------------------------------------------------------TTEETTEEEE
T ss_pred ----------------------------------------------------------------------hhhhccccee
Confidence 1247999999
Q ss_pred EeechhhhHHHHh-hccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchh
Q 010544 306 LTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDME 384 (507)
Q Consensus 306 L~~S~Ql~le~l~-~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~ 384 (507)
|++|||||||+++ +|++||||||||||+|+++|+||||||||||||++|+|++++|+++|+||+++++.+.++.. ..
T Consensus 77 L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~-~~- 154 (335)
T PF00152_consen 77 LTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAK-EL- 154 (335)
T ss_dssp E-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHH-HH-
T ss_pred cCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCc-cc-
Confidence 9999999999875 56999999999999999999999999999999999999999999999999999999875521 11
Q ss_pred hhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCcc-----------ccccccccccchHHHHHHHHHHcCC
Q 010544 385 FMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHF-----------ENKVEWGIDLASEHERYLTEVKFQK 453 (507)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~-----------~~~~~~g~dl~~e~Er~L~e~~~~~ 453 (507)
.++ ..+..||++++|.||++.+.+... ...+ +....+|..++.++|+.|++....+
T Consensus 155 ~~~------------~~~~~~f~ri~~~ea~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~ 221 (335)
T PF00152_consen 155 SLN------------IDLPKPFPRITYEEAFEIYGGDKP-DLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTD 221 (335)
T ss_dssp HTC------------EESSSS-EEEEHHHHHHHHHHTTT-TTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSS
T ss_pred ccc------------ccccCCceEeeehHHHHHhhcccc-cchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCC
Confidence 111 125578999999999999987531 1011 0111235668888899888766789
Q ss_pred CeEEEecCCCCccceeeecCCc-CeEEEEEEEcCCceEEeccccccccccccc
Q 010544 454 PVIVYNYPKGIKAFYMRLNDDL-KTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 454 P~fVtdyP~~~~Pfy~~~~~d~-~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
|+||+|||..++||||+.++++ ++++|||||++ |+||||||+|+||++++.
T Consensus 222 p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~-g~Ei~~G~~r~~d~~~l~ 273 (335)
T PF00152_consen 222 PVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIP-GGEIANGSQREHDPEELR 273 (335)
T ss_dssp EEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEET-TEEEEEEEEB--SHHHHH
T ss_pred cEEEEecccccCcccccccccccccccceeEEEe-CEEEehHHhhhhHHHHHH
Confidence 9999999999999999887766 89999999997 589999999999998763
No 32
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=5.3e-51 Score=420.57 Aligned_cols=242 Identities=18% Similarity=0.272 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHH
Q 010544 160 NTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVI 239 (507)
Q Consensus 160 ~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (507)
+.++++|++||.|++++|+||.++||+||+||+|+++.++|+.+.|.+.
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~------------------------------- 50 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH------------------------------- 50 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec-------------------------------
Confidence 4578999999999999999999999999999999988655555655331
Q ss_pred HhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-h
Q 010544 240 KEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-A 318 (507)
Q Consensus 240 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~ 318 (507)
.+||++++||+||||+|||++ +
T Consensus 51 ---------------------------------------------------------~~~~~~~~yL~~Spql~~k~ll~ 73 (329)
T cd00775 51 ---------------------------------------------------------HNALDMDLYLRIAPELYLKRLIV 73 (329)
T ss_pred ---------------------------------------------------------cCCCCcceeeccCHHHHHHHHHh
Confidence 125788999999999999987 5
Q ss_pred hccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhh
Q 010544 319 CAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRL 398 (507)
Q Consensus 319 ~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l 398 (507)
+|++|||+||||||||++ ++||||||||||||++|++++|+|+++|++|+++++.+.+.+ ++.+.+...
T Consensus 74 ~g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~~~~~--~~~~~~~~~-------- 142 (329)
T cd00775 74 GGFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKINGKT--KIEYGGKEL-------- 142 (329)
T ss_pred cCCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHHhCCc--eeecCCccc--------
Confidence 689999999999999999 799999999999999999999999999999999999987753 343332221
Q ss_pred ccccCCCceeeeHHHHHHHHHhhhhcC-C-----------------ccccccccccccchHHHHHHHHHHcCCCeEEEec
Q 010544 399 RMVASTPFERITYTEAVELLEVAVKEG-K-----------------HFENKVEWGIDLASEHERYLTEVKFQKPVIVYNY 460 (507)
Q Consensus 399 ~~~~~~pf~rity~eAi~~l~~~~~~~-~-----------------~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdy 460 (507)
..+.||+||||.||++.+.+..... . ++.....|+..+....+.++.. .+++|+||+||
T Consensus 143 --~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~-~~~~p~fi~~y 219 (329)
T cd00775 143 --DFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEP-TLIQPTFIIDH 219 (329)
T ss_pred --cCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcc-ccCCCEEEECC
Confidence 1347999999999999886542110 0 0000011222222223333333 24689999999
Q ss_pred CCCCccceeeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 461 PKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 461 P~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
|+.++||||..++|+++++|||||++ |.||+||++|++|++++
T Consensus 220 P~~~~~f~~~~~~~~~~~~rfdl~~~-G~Ei~~G~~el~d~~e~ 262 (329)
T cd00775 220 PVEISPLAKRHRSNPGLTERFELFIC-GKEIANAYTELNDPFDQ 262 (329)
T ss_pred ChHhCcCcCcCCCCCCeeEEEEeEEC-CEEEEcccchhCCHHHH
Confidence 99999999987788899999999996 67999999999997654
No 33
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-50 Score=412.82 Aligned_cols=265 Identities=25% Similarity=0.355 Sum_probs=225.2
Q ss_pred CCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch----hcccCCCCcEEEEEEEEeCCCC
Q 010544 38 RPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVPTGTCVYVEGMLKNPPE 113 (507)
Q Consensus 38 ~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~----~~~~L~~gs~V~V~G~v~~~~~ 113 (507)
|+++....+|++|.+|||+...|.+| .+.|..|||..|. +|+.++.+... ....++.||+|.|.|++..++.
T Consensus 38 ~~el~~~~vg~kv~l~GWl~~~~~~k--~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~v~~e~vv~v~gtvv~Rp~ 113 (628)
T KOG2411|consen 38 CGELSVNDVGKKVVLCGWLELHRVHK--MLTFFNLRDAYGI--VQQLLSPDSFPLAQKLENDVPLEDVVQVEGTVVSRPN 113 (628)
T ss_pred chhhccCccCCEEEEeeeeeeeeccc--cceEEEeeccCcc--eEEEecchhhhHHhcccCCCChhheEeeeeeEecccc
Confidence 56666778999999999999999998 8999999999986 89888877532 1234789999999999988742
Q ss_pred C------CcceeEEEEeEEEEeeCCCCCCCCCCCC-------CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHH
Q 010544 114 G------TKQKIELRVQKVVDVGMVDPAKYPIPKT-------KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFL 180 (507)
Q Consensus 114 g------~~~~~El~v~~i~vls~a~~~~~Pl~~~-------~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl 180 (507)
. ..|.+|+.++++++++++. ..+|+.-. ..+..+...+|||++|.+.++..+|+||.+++.||+||
T Consensus 114 ~sin~km~tg~vev~~e~~~vln~~~-~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~~v~~iR~yl 192 (628)
T KOG2411|consen 114 ESINSKMKTGFVEVVAEKVEVLNPVN-KKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSNVVKKIRRYL 192 (628)
T ss_pred cccCccccccceEEEeeeeEEecCcc-CCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 1 4689999999999999987 45665321 23444455799999999999999999999999999999
Q ss_pred Hh-CCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhh
Q 010544 181 QK-QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (507)
Q Consensus 181 ~~-~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 259 (507)
.+ .||+||+||+|...++|||.| |.|+|+...
T Consensus 193 ~n~~GFvevETPtLFkrTPgGA~E-FvVPtr~~~---------------------------------------------- 225 (628)
T KOG2411|consen 193 NNRHGFVEVETPTLFKRTPGGARE-FVVPTRTPR---------------------------------------------- 225 (628)
T ss_pred hhhcCeeeccCcchhccCCCccce-eecccCCCC----------------------------------------------
Confidence 77 579999999999999999999 999875211
Q ss_pred hhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccCCCCC
Q 010544 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHT 338 (507)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~t 338 (507)
| .||. |.||||.|||++ ++|++|+|||++|||+|+++.
T Consensus 226 -------------------------------g------~FYa----LpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~ 264 (628)
T KOG2411|consen 226 -------------------------------G------KFYA----LPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRA 264 (628)
T ss_pred -------------------------------C------ceee----cCCCHHHHHHHHHHhchhhHHhHHhhhcccccCc
Confidence 1 1343 999999999976 678999999999999999999
Q ss_pred CCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHH
Q 010544 339 SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELL 418 (507)
Q Consensus 339 ~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l 418 (507)
+|+ |||||+|+||+|.+.+|+|+++|++|+++|....+. -+..||+||||.||+..|
T Consensus 265 DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k~~----------------------~l~~PF~riTY~~Am~~Y 321 (628)
T KOG2411|consen 265 DRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDKGI----------------------QLPVPFPRITYADAMDKY 321 (628)
T ss_pred ccC-CcceeeeeEEeccCHHHHHHHHHHHHHHhchhhcCC----------------------CCCCCcccccHHHHHHHh
Confidence 999 799999999999999999999999999999865431 156799999999999999
No 34
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=100.00 E-value=4.3e-49 Score=402.34 Aligned_cols=225 Identities=20% Similarity=0.227 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecC-CCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhh
Q 010544 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS-DCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGE 244 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~-~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~ 244 (507)
+++||.|++++|+||.++||+||+||+|+++ .+||+++.|.+.-
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y----------------------------------- 45 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEF----------------------------------- 45 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeec-----------------------------------
Confidence 4789999999999999999999999999988 4666667654320
Q ss_pred hHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCc
Q 010544 245 AVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSN 323 (507)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~r 323 (507)
|..+++++++||+||||||||++ ++|++|
T Consensus 46 --------------------------------------------------~~~~~~~~~~yL~~Spql~lk~ll~~g~~r 75 (304)
T TIGR00462 46 --------------------------------------------------LGPDGEGRPLYLQTSPEYAMKRLLAAGSGP 75 (304)
T ss_pred --------------------------------------------------cCCCCCCcceeeecCHHHHHHHHHhccCCC
Confidence 11124667899999999999965 678999
Q ss_pred EEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccC
Q 010544 324 VYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAS 403 (507)
Q Consensus 324 VfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 403 (507)
|||||||||||++ ++||||||||||||++|.|++|+|+++|+|++++++. ++
T Consensus 76 Vfeigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~---------------------------~~ 127 (304)
T TIGR00462 76 IFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD---------------------------PF 127 (304)
T ss_pred EEEEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------------cC
Confidence 9999999999999 6999999999999999999999999999999999864 13
Q ss_pred CCceeeeHHHHHHHHHhhhhcC----------CccccccccccccchHHHHHHHHHH---c--CCCeEEEecCCCCccce
Q 010544 404 TPFERITYTEAVELLEVAVKEG----------KHFENKVEWGIDLASEHERYLTEVK---F--QKPVIVYNYPKGIKAFY 468 (507)
Q Consensus 404 ~pf~rity~eAi~~l~~~~~~~----------~~~~~~~~~g~dl~~e~Er~L~e~~---~--~~P~fVtdyP~~~~Pfy 468 (507)
.||++|||.||++.+.+.+... ++.+....++.|+.+.+|++|++.+ + ++|+||+|||..++|||
T Consensus 128 ~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~ 207 (304)
T TIGR00462 128 APWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALA 207 (304)
T ss_pred CCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCc
Confidence 5899999999988665542110 0111223455788999999987653 3 57999999999999999
Q ss_pred eeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 469 MRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 469 ~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
+.+++++++++|||||++ |.||+||++|+++++++
T Consensus 208 ~~~~~~~~~~~rfdl~~~-G~Ei~~G~~el~d~~~~ 242 (304)
T TIGR00462 208 RISPDDPRVAERFELYIK-GLELANGFHELTDAAEQ 242 (304)
T ss_pred cccCCCCCeeEEEEEEEC-CEEEeeceeecCCHHHH
Confidence 877778899999999997 66999999999998765
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=8.6e-47 Score=379.14 Aligned_cols=203 Identities=23% Similarity=0.345 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhh
Q 010544 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEA 245 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~ 245 (507)
|++||.|++++|+||.++||+||+||+|+++.+||+++.|.+.
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~------------------------------------- 43 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK------------------------------------- 43 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee-------------------------------------
Confidence 5799999999999999999999999999998888888876653
Q ss_pred HHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccc--cCceeeEeechhhhHHHHh-hccC
Q 010544 246 VAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDF--FARQAFLTVSGQLQVETYA-CAVS 322 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~--f~~~~yL~~S~Ql~le~l~-~g~~ 322 (507)
| +++++||++|||+|||+++ +|++
T Consensus 44 -----------------------------------------------------~~~~g~~~~L~~Spql~~~~~~~~~~~ 70 (269)
T cd00669 44 -----------------------------------------------------YNALGLDYYLRISPQLFKKRLMVGGLD 70 (269)
T ss_pred -----------------------------------------------------ecCCCCcEEeecCHHHHHHHHHhcCCC
Confidence 2 3778999999999999874 6799
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhcccc
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~ 402 (507)
|||+||||||+| ..+.||++||||||||++|.|++|+|+++|++|+++++.+.+.+..++... ...+
T Consensus 71 ~vf~i~~~fR~e-~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~------------~~~~ 137 (269)
T cd00669 71 RVFEINRNFRNE-DLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFE------------LEDF 137 (269)
T ss_pred cEEEEecceeCC-CCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccccccccc------------cccc
Confidence 999999999999 459999999999999999999999999999999999999988765444211 0125
Q ss_pred CCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeec-CCcCeEEEE
Q 010544 403 STPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAM 481 (507)
Q Consensus 403 ~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~-~d~~~~~rF 481 (507)
+.||+||||.||++.+. +|+||+|||..++|||++.+ +++++++||
T Consensus 138 ~~~~~rit~~ea~~~~~---------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~f 184 (269)
T cd00669 138 GLPFPRLTYREALERYG---------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAF 184 (269)
T ss_pred CCCceEeeHHHHHHHhC---------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEE
Confidence 67999999999998761 68999999999999998754 467899999
Q ss_pred EEEcCCceEEeccccccccccccc
Q 010544 482 DVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 482 DLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
|||+| |+||+|||+|+||++++.
T Consensus 185 dl~~~-g~Ei~~G~~r~~d~~~l~ 207 (269)
T cd00669 185 DLFIN-GVEVGNGSSRLHDPDIQA 207 (269)
T ss_pred EEeeC-CEEEeeCchhcCCHHHHH
Confidence 99997 669999999999999874
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=100.00 E-value=1e-43 Score=363.13 Aligned_cols=222 Identities=19% Similarity=0.254 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhh
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEK 242 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~ 242 (507)
..+|++|+.|++++|+||.++||+||+||+|+..+.+|+... ||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~--------------------~f---------------- 45 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLV--------------------PF---------------- 45 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCC--------------------ce----------------
Confidence 468999999999999999999999999999987654443221 11
Q ss_pred hhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCcccccccc------CceeeEeechhhhHHH
Q 010544 243 GEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFF------ARQAFLTVSGQLQVET 316 (507)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f------~~~~yL~~S~Ql~le~ 316 (507)
..+|| ++++||.||||+|+|+
T Consensus 46 -----------------------------------------------------~~~y~~~~~~~~~~~~L~~SPe~~~kr 72 (306)
T PRK09350 46 -----------------------------------------------------ETRFVGPGASQGKTLWLMTSPEYHMKR 72 (306)
T ss_pred -----------------------------------------------------eeeeccccccCCcceEEecCHHHHHHH
Confidence 12233 7889999999999997
Q ss_pred H-hhccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhh
Q 010544 317 Y-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCI 395 (507)
Q Consensus 317 l-~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~ 395 (507)
+ +++++|||+||||||+|++ +.||++||||||||++|.|++|+|+++|+||++++..
T Consensus 73 ~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~--------------------- 130 (306)
T PRK09350 73 LLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC--------------------- 130 (306)
T ss_pred HhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc---------------------
Confidence 5 5689999999999999999 9999999999999999999999999999999988631
Q ss_pred hhhccccCCCceeeeHHHHHHHHHhhhhcCCc---c-cccccccc--------ccchHHHHHH---HHHHc--CCCeEEE
Q 010544 396 NRLRMVASTPFERITYTEAVELLEVAVKEGKH---F-ENKVEWGI--------DLASEHERYL---TEVKF--QKPVIVY 458 (507)
Q Consensus 396 ~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~---~-~~~~~~g~--------dl~~e~Er~L---~e~~~--~~P~fVt 458 (507)
.||++++|.||++.+.+.+..... + +...++|. ++.+..++.+ ++..+ +.|+||+
T Consensus 131 --------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~ 202 (306)
T PRK09350 131 --------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVY 202 (306)
T ss_pred --------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 368899999999877543210000 0 00112332 3333333333 33334 3699999
Q ss_pred ecCCCCccceeeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 459 NYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 459 dyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
|||.+++||||..++++++++|||||++ |+||+||++|++|++++
T Consensus 203 ~yP~~~~~~a~~~~~~~~~~~rfdl~i~-G~Ei~nG~~el~d~~~~ 247 (306)
T PRK09350 203 HFPASQAALAKISTEDHRVAERFEVYFK-GIELANGFHELTDAREQ 247 (306)
T ss_pred cCccccCccccccCCCCCeeEEEEEEEC-CEEEecchhhcCCHHHH
Confidence 9999999999987788899999999997 66999999999999765
No 37
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=100.00 E-value=6.4e-42 Score=345.72 Aligned_cols=208 Identities=27% Similarity=0.344 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhh
Q 010544 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEA 245 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~ 245 (507)
+++||.|++++|+||.++||+||+||+|++++|||+++ |.+....
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~~---------------------------------- 45 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSRL---------------------------------- 45 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceecccc----------------------------------
Confidence 47999999999999999999999999999999999877 6553100
Q ss_pred HHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcE
Q 010544 246 VAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNV 324 (507)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rV 324 (507)
+.+..+||+||||||||++ ++|++||
T Consensus 46 -----------------------------------------------------~~~~~~~L~~Spql~lk~ll~~g~~~v 72 (280)
T cd00777 46 -----------------------------------------------------HPGKFYALPQSPQLFKQLLMVSGFDRY 72 (280)
T ss_pred -----------------------------------------------------CCCceeecccCHHHHHHHHHhcCcCcE
Confidence 0122345999999999986 4789999
Q ss_pred EEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCC
Q 010544 325 YTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVAST 404 (507)
Q Consensus 325 feI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~ 404 (507)
|+||||||+|+++++||+ ||||+|||++|.|++|+|+++|+||++++..+.+. .+..
T Consensus 73 ~~i~~~fR~e~~~~~r~~-Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~----------------------~~~~ 129 (280)
T cd00777 73 FQIARCFRDEDLRADRQP-EFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGV----------------------ELTT 129 (280)
T ss_pred EEeccceeCCCCCCCccc-eeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCC----------------------CCCC
Confidence 999999999999888785 99999999999999999999999999999877542 1356
Q ss_pred CceeeeHHHHHHHHHhhhhcCCccccccccccccc-----hHHHHHHHHHHcCCCeEEEe-cCCCCc---cceeeecCCc
Q 010544 405 PFERITYTEAVELLEVAVKEGKHFENKVEWGIDLA-----SEHERYLTEVKFQKPVIVYN-YPKGIK---AFYMRLNDDL 475 (507)
Q Consensus 405 pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~-----~e~Er~L~e~~~~~P~fVtd-yP~~~~---Pfy~~~~~d~ 475 (507)
||+||||.||++.+. ..+.|+.|+. .++++. +++++ ||...+ |+++..+++
T Consensus 130 p~~rity~eA~~~~~----------~~~~~~~d~~~~~~~~~~~~~---------~~~~~pf~~~~~~~~~~~~~~~~~- 189 (280)
T cd00777 130 PFPRMTYAEAMERYG----------FKFLWIVDFPLFEWDEEEGRL---------VSAHHPFTAPKEEDLDLLEKDPED- 189 (280)
T ss_pred CCceeeHHHHHHHhC----------CCCccccCCcccCChhHHHHH---------HHHhCCCcCCCcccchhhhcCCcc-
Confidence 899999999999762 1234665543 122332 23333 333222 243333333
Q ss_pred CeEEEEEEEcCCceEEeccccccccccccc
Q 010544 476 KTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 476 ~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
++++|||||+| |+||+|||+|+||+++|.
T Consensus 190 ~~~~~fdl~~~-G~Ei~~G~~r~~d~~~l~ 218 (280)
T cd00777 190 ARAQAYDLVLN-GVELGGGSIRIHDPDIQE 218 (280)
T ss_pred CeeEEEEEEeC-CEEEccCEEEcCCHHHHH
Confidence 79999999997 569999999999999874
No 38
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-36 Score=298.93 Aligned_cols=226 Identities=18% Similarity=0.224 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhh
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKG 243 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~ 243 (507)
..+..|+.|+.+||.||.++||+||+||.|+.+. ..+. .+ .||+++-.
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~---vtd~-hL----------------~~F~Te~~------------ 61 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAP---VTDI-HL----------------HPFETEFL------------ 61 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCC---CCcc-ce----------------eeeeeEEe------------
Confidence 4488999999999999999999999999999872 2221 11 12211100
Q ss_pred hhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccC
Q 010544 244 EAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVS 322 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~ 322 (507)
. | +|+ =+.+.||++||++|||.+ ++|.+
T Consensus 62 ------~---------------------------------~-----~~~-------~~~~l~L~TSPEy~mKrLLAag~~ 90 (322)
T COG2269 62 ------G---------------------------------P-----GGA-------KGKPLWLHTSPEYHMKRLLAAGSG 90 (322)
T ss_pred ------c---------------------------------c-----Ccc-------ccceeeeecCcHHHHHHHHHccCC
Confidence 0 0 000 135789999999999976 67899
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhcccc
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVA 402 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~ 402 (507)
++||||+||||++. +++|+|||||||||..+.||+.+|+.+.+|+..+++.
T Consensus 91 ~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~---------------------------- 141 (322)
T COG2269 91 PIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLEC---------------------------- 141 (322)
T ss_pred cchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHcc----------------------------
Confidence 99999999999997 9999999999999999999999999999999887752
Q ss_pred CCCceeeeHHHHHHHHHhhhhcCCc----------cccccccccccchHHHHHHHHHH-----cCCCeEEEecCCCCccc
Q 010544 403 STPFERITYTEAVELLEVAVKEGKH----------FENKVEWGIDLASEHERYLTEVK-----FQKPVIVYNYPKGIKAF 467 (507)
Q Consensus 403 ~~pf~rity~eAi~~l~~~~~~~~~----------~~~~~~~g~dl~~e~Er~L~e~~-----~~~P~fVtdyP~~~~Pf 467 (507)
.++.++||.||+..+.+++....+ .+....-.++..+..++.+++.+ +++|+||+|||..++.+
T Consensus 142 -~~~E~ls~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaL 220 (322)
T COG2269 142 -VEAERLSYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAAL 220 (322)
T ss_pred -CCcceeeHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHh
Confidence 236899999999999876522100 01111111233334455555533 25899999999999999
Q ss_pred eeeecCCcCeEEEEEEEcCCceEEeccccccccccc
Q 010544 468 YMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 468 y~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
++..+.|+++++|||||+. |.||+||.-...|-++
T Consensus 221 A~i~~~D~rVAERFElY~k-GiELaNgf~EltDa~E 255 (322)
T COG2269 221 AQISTGDPRVAERFELYYK-GIELANGFHELTDAAE 255 (322)
T ss_pred hccCCCCcchhhhhhheee-eeeecccchhcCCHHH
Confidence 9999999999999999995 7799999988777543
No 39
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.78 E-value=1.9e-18 Score=156.57 Aligned_cols=119 Identities=20% Similarity=0.360 Sum_probs=96.0
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch---hcccCCCCcEEEEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVYVEG 106 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~---~~~~L~~gs~V~V~G 106 (507)
++++++. +...|+.|+|+|||+++|.+| +++|++|||++|. +|+|+..+... +.+.|+.||+|.|+|
T Consensus 3 ~~~~~~~------~~~~g~~V~i~Gwv~~~R~~g--k~~Fi~LrD~~g~--~Q~v~~~~~~~~~~~~~~l~~gs~V~V~G 72 (135)
T cd04317 3 HYCGELR------ESHVGQEVTLCGWVQRRRDHG--GLIFIDLRDRYGI--VQVVFDPEEAPEFELAEKLRNESVIQVTG 72 (135)
T ss_pred eehhhCC------hhHCCCEEEEEEeEehhcccC--CEEEEEEecCCee--EEEEEeCCchhHHHHHhCCCCccEEEEEE
Confidence 4455554 356799999999999999999 7999999999985 99999865432 345689999999999
Q ss_pred EEeCCCCC------CcceeEEEEeEEEEeeCCCCCCCCCCCCC---CChhhhccccccccCcH
Q 010544 107 MLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTN 160 (507)
Q Consensus 107 ~v~~~~~g------~~~~~El~v~~i~vls~a~~~~~Pl~~~~---~~~e~~r~~~~l~~R~~ 160 (507)
++..++.+ ..+++||+++++++|++|. ++|+..+. .+.++..++|||++|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~~--~lP~~~~~~~~~~~~~r~~~R~LdLR~~ 133 (135)
T cd04317 73 KVRARPEGTVNPKLPTGEIEVVASELEVLNKAK--TLPFEIDDDVNVSEELRLKYRYLDLRRP 133 (135)
T ss_pred EEECCCccccCCCCCCCcEEEEEeEEEEEECCC--CCCCccccccCCCHHHhhhcceeecCCC
Confidence 99986421 3578999999999999983 67775543 46788889999999986
No 40
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.75 E-value=1e-17 Score=145.17 Aligned_cols=99 Identities=29% Similarity=0.445 Sum_probs=84.8
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc--chh--cccCCCCcEEEEEEEEeCCCCCCcceeEEEEe
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV--ADL--GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQ 124 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~--~~~--~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~ 124 (507)
+|+|+|||+++|.+| |++|++|||++|. +|+|++.+. ..+ .+.|+.||+|.|+|++..++. ..+++||+++
T Consensus 1 ~V~v~Gwv~~~R~~g--k~~Fi~lrD~~g~--iQ~v~~~~~~~~~~~~~~~l~~~s~v~V~G~v~~~~~-~~~~~Ei~~~ 75 (103)
T cd04319 1 KVTLAGWVYRKREVG--KKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKKVGIESSVIVEGAVKADPR-APGGAEVHGE 75 (103)
T ss_pred CEEEEEEEEeEEcCC--CeEEEEEecCCee--EEEEEeCCCCHHHHHHHhCCCCCCEEEEEEEEEECCC-CCCCEEEEEE
Confidence 389999999999999 7999999999985 999998752 112 346899999999999998874 5678999999
Q ss_pred EEEEeeCCCCCCCCCCCCCCChhhhcccccc
Q 010544 125 KVVDVGMVDPAKYPIPKTKLTLEFLRDRIPF 155 (507)
Q Consensus 125 ~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l 155 (507)
+++++|++. ++|++.+. +.|+++++|||
T Consensus 76 ~i~vl~~a~--~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 76 KLEIIQNVE--FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEEecCC--CCccCCCC-CHHHHhhccCC
Confidence 999999985 69998764 89999999986
No 41
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.73 E-value=2.7e-17 Score=143.61 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=80.4
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc---ch---hcccCCCCcEEEEEEEEeCCCCCCcceeEEE
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---AD---LGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~---~~---~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~ 122 (507)
+|+|+|||+++|.+| +++|++|||+++ .+|+|++.+. .. +.+.|+.||+|.|+|++.+++. |++||+
T Consensus 1 ~v~v~GwV~~~R~~g--~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~---g~~El~ 73 (108)
T cd04322 1 EVSVAGRIMSKRGSG--KLSFADLQDESG--KIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTKT---GELSIF 73 (108)
T ss_pred CEEEEEEEEEEecCC--CeEEEEEEECCe--EEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecCC---CCEEEE
Confidence 379999999999999 899999999996 4999998663 12 2334999999999999999875 589999
Q ss_pred EeEEEEeeCCCCCCCCCCCCCC---Chhhhcccccccc
Q 010544 123 VQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRP 157 (507)
Q Consensus 123 v~~i~vls~a~~~~~Pl~~~~~---~~e~~r~~~~l~~ 157 (507)
+++++++|+|. +|+|.+.+ +.|+.+++|||++
T Consensus 74 ~~~~~ils~~~---~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 74 VKEFTLLSKSL---RPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred eCEeEEeeccC---CCCCCCccCcCChhheeecccccC
Confidence 99999999984 55655443 4567777888763
No 42
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.72 E-value=5.2e-17 Score=141.86 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=80.0
Q ss_pred CCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCCCcEEEEEEEEeCCCCCC
Q 010544 41 GGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTCVYVEGMLKNPPEGT 115 (507)
Q Consensus 41 ~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~gs~V~V~G~v~~~~~g~ 115 (507)
+.....|+.|+|+|||+++|.+| +++|++|||++|. +|+|+..+.. .+.+.|+.||+|.|+|++..++. .
T Consensus 6 l~~~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~ 80 (108)
T cd04316 6 ITPELDGEEVTVAGWVHEIRDLG--GIKFVILRDREGI--VQVTAPKKKVDKELFKTVRKLSRESVISVTGTVKAEPK-A 80 (108)
T ss_pred CchhhCCCEEEEEEEEEeeeccC--CeEEEEEecCCee--EEEEEeCCCCCHHHHHHHhCCCCcCEEEEEEEEEeCCC-C
Confidence 34466799999999999999999 8999999999985 9999986531 23456999999999999999874 4
Q ss_pred cceeEEEEeEEEEeeCCCCCCCCCCC
Q 010544 116 KQKIELRVQKVVDVGMVDPAKYPIPK 141 (507)
Q Consensus 116 ~~~~El~v~~i~vls~a~~~~~Pl~~ 141 (507)
.+++||++++++++++++ .++|++.
T Consensus 81 ~~~~Ei~~~~i~il~~~~-~~~P~~~ 105 (108)
T cd04316 81 PNGVEIIPEEIEVLSEAK-TPLPLDP 105 (108)
T ss_pred CCCEEEEEeEEEEEeCCC-CCCCcCc
Confidence 578999999999999986 4788753
No 43
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.65 E-value=1.5e-15 Score=131.17 Aligned_cols=88 Identities=27% Similarity=0.420 Sum_probs=73.1
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc---c----hhcccCCCCcEEEEEEEEeCCCCC----Ccc
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV---A----DLGQLVPTGTCVYVEGMLKNPPEG----TKQ 117 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~---~----~~~~~L~~gs~V~V~G~v~~~~~g----~~~ 117 (507)
.|+|+|||+++|.+|+ +++|++|||++|. +|+|++.+. . .+.+.|+.||+|.|+|++..++.. ..+
T Consensus 1 ~V~i~Gwv~~~R~~g~-k~~Fi~LrD~sg~--iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~ 77 (102)
T cd04320 1 EVLIRARVHTSRAQGA-KLAFLVLRQQGYT--IQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQ 77 (102)
T ss_pred CEEEEEEEEEeecCCC-ceEEEEEecCCce--EEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcC
Confidence 3899999999999997 7999999999985 999998653 1 123568999999999999987542 137
Q ss_pred eeEEEEeEEEEeeCCCCCCCCCC
Q 010544 118 KIELRVQKVVDVGMVDPAKYPIP 140 (507)
Q Consensus 118 ~~El~v~~i~vls~a~~~~~Pl~ 140 (507)
++||+++++++|++|. .++|++
T Consensus 78 ~~El~~~~i~il~~~~-~~~P~~ 99 (102)
T cd04320 78 DVELHIEKIYVVSEAA-EPLPFQ 99 (102)
T ss_pred cEEEEEEEEEEEecCC-CCCCCC
Confidence 8999999999999985 467765
No 44
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.61 E-value=6.9e-15 Score=122.01 Aligned_cols=80 Identities=41% Similarity=0.724 Sum_probs=69.2
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch--hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~--~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
.|+|+|||+++|.+| +++|++|||+++...+|+|++++... ..+.|+.||+|.|+|.+..++. +++++||+++++
T Consensus 1 ~v~v~Gwv~~~R~~g--~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~l~~gs~V~v~G~v~~~~~-~~~~~El~~~~i 77 (82)
T cd04318 1 EVTVNGWVRSVRDSK--KISFIELNDGSCLKNLQVVVDKELTNFKEILKLSTGSSIRVEGVLVKSPG-AKQPFELQAEKI 77 (82)
T ss_pred CEEEEEeEEEEEcCC--cEEEEEEECCCCccCEEEEEeCcccCHHHHhcCCCceEEEEEEEEEeCCC-CCCCEEEEEEEE
Confidence 379999999999999 89999999999866799999876532 3456899999999999999874 468999999999
Q ss_pred EEeeC
Q 010544 127 VDVGM 131 (507)
Q Consensus 127 ~vls~ 131 (507)
++++.
T Consensus 78 ~il~~ 82 (82)
T cd04318 78 EVLGE 82 (82)
T ss_pred EEecC
Confidence 99863
No 45
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.56 E-value=2.2e-14 Score=120.38 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=66.7
Q ss_pred EEEEEEEEEeeee-cCCceeEEEEEEcCCCCceEEEEEeCCcchh--cccCCCCcEEEEEEEEeCCCCC---CcceeEEE
Q 010544 49 QVRVGGWVKTGRE-QGKGSFAFLEVNDGSCPANLQVIVDKDVADL--GQLVPTGTCVYVEGMLKNPPEG---TKQKIELR 122 (507)
Q Consensus 49 ~V~V~GwV~~iR~-~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~--~~~L~~gs~V~V~G~v~~~~~g---~~~~~El~ 122 (507)
+|+|+|||+++|+ +| +++|++|||++| ..+|+|++++...| .+.|+.||+|.|+|++.+++.. +.+++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~--~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVK--KLSFADLRDPNG-DIIQLVSTAKKDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCC--ceEEEEEECCCC-CEEEEEECCCHHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 56 899999999998 46999998764333 2468999999999999998742 23789999
Q ss_pred EeEEEEeeC
Q 010544 123 VQKVVDVGM 131 (507)
Q Consensus 123 v~~i~vls~ 131 (507)
++++++||+
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999984
No 46
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.56 E-value=2e-14 Score=119.91 Aligned_cols=78 Identities=29% Similarity=0.427 Sum_probs=67.3
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc---hhcccCCCCcEEEEEEEEeCCCCCC---cceeEEE
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEGMLKNPPEGT---KQKIELR 122 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---~~~~~L~~gs~V~V~G~v~~~~~g~---~~~~El~ 122 (507)
.|+|+|||+++|.+| +++|++|||++|. +|++++.+.. ...+.|+.||+|.|+|++.+++. + .+++||+
T Consensus 1 ~V~v~Gwv~~~R~~g--~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~-~~~~~~~~Ei~ 75 (84)
T cd04323 1 RVKVFGWVHRLRSQK--KLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSLTQESSVEVTGEVKEDPR-AKQAPGGYELQ 75 (84)
T ss_pred CEEEEEEEEEEecCC--CcEEEEEEcCCeE--EEEEEcCCcchhHHHHhcCCCcCEEEEEEEEEECCc-ccCCCCCEEEE
Confidence 389999999999998 8999999999985 9999986542 23456899999999999999874 4 6789999
Q ss_pred EeEEEEeeC
Q 010544 123 VQKVVDVGM 131 (507)
Q Consensus 123 v~~i~vls~ 131 (507)
++++++||+
T Consensus 76 ~~~i~vl~~ 84 (84)
T cd04323 76 VDYLEIIGE 84 (84)
T ss_pred EEEEEEEcC
Confidence 999999984
No 47
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.55 E-value=2.9e-14 Score=119.05 Aligned_cols=79 Identities=30% Similarity=0.570 Sum_probs=67.7
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch----hcccCCCCcEEEEEEEEeCCCCC--CcceeEEE
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVPTGTCVYVEGMLKNPPEG--TKQKIELR 122 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~----~~~~L~~gs~V~V~G~v~~~~~g--~~~~~El~ 122 (507)
.|+|+|||+++|.+| +++|++|||+++. +|++++.+... +.+.|+.||+|.|+|++..++.. +.+++||+
T Consensus 1 ~V~i~Gwv~~~R~~g--~~~Fi~Lrd~~~~--iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHG--GLIFIDLRDGSGI--VQVVVNKEELGEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCC--CEEEEEEEeCCee--EEEEEECCcChHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999 8999999999975 99999876432 34579999999999999988731 46899999
Q ss_pred EeEEEEeeC
Q 010544 123 VQKVVDVGM 131 (507)
Q Consensus 123 v~~i~vls~ 131 (507)
+++++++++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
No 48
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=98.91 E-value=4.1e-09 Score=111.69 Aligned_cols=130 Identities=21% Similarity=0.305 Sum_probs=85.0
Q ss_pred CcHHHHHHHHH-----HHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhH
Q 010544 158 RTNTIAAVARI-----RNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADI 232 (507)
Q Consensus 158 R~~~~~~~~~~-----rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~ 232 (507)
|.+..++++.+ .+.|..++|++|.+.||.||.||+|+... .|.......+ .+.
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee------~~e~~g~~~g----------~~i------ 247 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE------YIERMGIDND----------TEL------ 247 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHH------HHHHhCCCCc----------ccc------
Confidence 67888999999 99999999999999999999999998542 0100000000 000
Q ss_pred HHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEe--ech
Q 010544 233 EAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLT--VSG 310 (507)
Q Consensus 233 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~--~S~ 310 (507)
. + .+ |. +.+..+|. ..|
T Consensus 248 ------~---------------------------~-----------------~m--------y~---ideel~LRpsLtP 266 (417)
T PRK09537 248 ------S---------------------------K-----------------QI--------FR---VDKNFCLRPMLAP 266 (417)
T ss_pred ------h---------------------------h-----------------hh--------ee---eCCceEehhhhHH
Confidence 0 0 00 00 12234455 345
Q ss_pred hhhHHHHh----hc-cCcEEEEeeccccCCCCCCCCccccccccccccCCC--HHHHHHHHHHHHHHH
Q 010544 311 QLQVETYA----CA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD--LKDDMNCAEAYVKFM 371 (507)
Q Consensus 311 Ql~le~l~----~g-~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d--~~dlm~~~E~li~~i 371 (507)
+++..+.. .. =-|+|+||+|||+|.. +.+|++||+|++++....+ +.|++.+++++++.+
T Consensus 267 sLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 267 GLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred HHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 55554321 11 2489999999999987 8899999999999998653 566666666555543
No 49
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=98.87 E-value=1.4e-08 Score=81.47 Aligned_cols=73 Identities=27% Similarity=0.401 Sum_probs=60.6
Q ss_pred EEEEEEEEee-eecCCceeEEEEEEcCCCCceEEEEEeC-CcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEE
Q 010544 50 VRVGGWVKTG-REQGKGSFAFLEVNDGSCPANLQVIVDK-DVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 50 V~V~GwV~~i-R~~g~~kl~Fi~LrD~sg~~~IQvVv~~-~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~ 127 (507)
|+|.|||.++ |..+ +++|+.|+|++|. +|+++.. ....+...|..|++|.|.|++...+. +++||.+++++
T Consensus 1 V~v~G~V~~~~~~~~--~~~~~~l~D~tg~--i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~---~~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGG--KIVFFTLEDGTGS--IQVVFFNEEYERFREKLKEGDIVRVRGKVKRYNG---GELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETHHHHHHHHTS-TTSEEEEEEEEEEETT---SSEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCC--CEEEEEEEECCcc--EEEEEccHHhhHHhhcCCCCeEEEEEEEEEEECC---ccEEEEECEEE
Confidence 7899999999 5555 8999999999975 9999998 32335667999999999999998863 25999999998
Q ss_pred Ee
Q 010544 128 DV 129 (507)
Q Consensus 128 vl 129 (507)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 50
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.77 E-value=1.3e-08 Score=97.02 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=50.5
Q ss_pred CceeeEeechhhhHHHHhh-----ccCcEEEEeeccccCCCCCC--CCccccccccccccCCCH------HHHHHHHHHH
Q 010544 301 ARQAFLTVSGQLQVETYAC-----AVSNVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSDL------KDDMNCAEAY 367 (507)
Q Consensus 301 ~~~~yL~~S~Ql~le~l~~-----g~~rVfeI~p~FRaE~~~t~--rHl~EFtmLE~E~af~d~------~dlm~~~E~l 367 (507)
+...+|.+|....+-.++. .--|+||||+|||.|.. +. +|+.||+|+++++...+. .+++.+++++
T Consensus 50 ~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 128 (211)
T cd00768 50 EEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEEL 128 (211)
T ss_pred CCEEEECCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHH
Confidence 3456799998888865543 34599999999999976 43 788999999999998643 4555555555
Q ss_pred HH
Q 010544 368 VK 369 (507)
Q Consensus 368 i~ 369 (507)
++
T Consensus 129 l~ 130 (211)
T cd00768 129 LR 130 (211)
T ss_pred HH
Confidence 54
No 51
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.49 E-value=4.9e-07 Score=96.11 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=45.5
Q ss_pred eeEe--echhhhHHHHh----hc-cCcEEEEeeccccCCCCCCCCccccccccccccCCC--HHHHHHHHHHHHH
Q 010544 304 AFLT--VSGQLQVETYA----CA-VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD--LKDDMNCAEAYVK 369 (507)
Q Consensus 304 ~yL~--~S~Ql~le~l~----~g-~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d--~~dlm~~~E~li~ 369 (507)
.+|. ..|+|+.-+.. .. -.|+|+||+|||+|.. +..|+.||+|++++....+ +.|+..++.++++
T Consensus 294 lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr 367 (453)
T TIGR02367 294 FCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLD 367 (453)
T ss_pred eEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3455 45666643321 12 2499999999999987 8899999999999988754 6766654444443
No 52
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.12 E-value=1.1e-05 Score=75.77 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=39.6
Q ss_pred cEEEEeeccccCC--CCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEH--SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (507)
Q Consensus 323 rVfeI~p~FRaE~--~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~ 374 (507)
|+|++|+|||+|. .++-..+-||+|.|++.-..+ ++..+..++++..+.+-
T Consensus 85 ~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i 137 (173)
T PF00587_consen 85 KLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEI 137 (173)
T ss_dssp EEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred EEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHH
Confidence 8999999999993 224567779999999998777 88887777777655543
No 53
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.07 E-value=2.2e-05 Score=76.98 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=51.0
Q ss_pred eeEeec--hhhhHHHHhh--ccCcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 304 AFLTVS--GQLQVETYAC--AVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 304 ~yL~~S--~Ql~le~l~~--g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
.+|.+| |.+ ++.++. .--|+||||+|||++.. +..|+|||+||++.+++. |+.|++..+|.++..+
T Consensus 60 ~~LR~sLlp~L-L~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 60 LLLRTHTSAVQ-ARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred EEEeccCcHHH-HHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 345555 322 244443 45699999999999876 668889999999999987 8999999999998754
No 54
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.96 E-value=4.9e-05 Score=76.07 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=44.9
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i~~ 373 (507)
-|+|+||+|||.|.. +.+|+|+|.|+|.-.... ++.+++..++.++++++.
T Consensus 103 ~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG 155 (247)
T PF01409_consen 103 IKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFG 155 (247)
T ss_dssp EEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHT
T ss_pred eEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhh
Confidence 699999999999998 999999999999977765 488899888888888864
No 55
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.79 E-value=0.00014 Score=73.04 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
.+.|..|...+++.|.+.||.||.||+|...+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~ 33 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTE 33 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHH
Confidence 46789999999999999999999999998764
No 56
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=97.68 E-value=5e-05 Score=76.47 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=37.8
Q ss_pred cEEEEeeccccCCCCC--CCCccccccccccccCCCHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHT--SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t--~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~ 370 (507)
|+|++++|||+|...+ --=.-||+|.|.+..+.+.++..+..++++..
T Consensus 121 r~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~ 170 (261)
T cd00778 121 KINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDL 170 (261)
T ss_pred HHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHH
Confidence 6799999999998632 11234999999999999988888888877653
No 57
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.63 E-value=0.00035 Score=72.75 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=43.9
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i~~ 373 (507)
|+|++|+|||.+.. +.+|.|+|.|+|.=... .++.++...++.+++.++.
T Consensus 187 rif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg 238 (339)
T PRK00488 187 RIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFG 238 (339)
T ss_pred EEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcC
Confidence 89999999999988 99999999999986655 4589998888888888875
No 58
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.63 E-value=0.00033 Score=68.45 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
.+++..|...+++.|.+.||.||.||.|...+
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~ 33 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTV 33 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHH
Confidence 36788999999999999999999999998764
No 59
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=97.62 E-value=0.00017 Score=78.33 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=40.1
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCCC--HHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD--LKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d--~~dlm~~~E~li~~i 371 (507)
-|+|+||+|||+|.. +..|++||+|+|......+ ..+++.++.++++.+
T Consensus 358 ~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 358 KKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred ceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 499999999999998 9999999999999888765 466666666555544
No 60
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=97.60 E-value=0.00021 Score=71.73 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|.+.+++.|.+.||.||.||+|...
T Consensus 29 ~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~ 61 (255)
T cd00779 29 LGLRVLKKIENIIREEMNKIGAQEILMPILQPA 61 (255)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 346789999999999999999999999999774
No 61
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.56 E-value=0.0004 Score=73.73 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
..-.+++..+...+++.|.+.||.||.||+|...
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~ 44 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYT 44 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchH
Confidence 3456889999999999999999999999999764
No 62
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.44 E-value=0.001 Score=68.37 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=41.6
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMC 372 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i~ 372 (507)
-|+|+||+|||++.. +.+|+|||.+|+.-... .++.|+...+|.++..+.
T Consensus 151 irlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 151 IRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMF 202 (294)
T ss_pred ceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 499999999999876 77999999999987654 368888888888887653
No 63
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00082 Score=71.70 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
..-.+.+..+...+++.|.+.||.||.||+|...
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~ 48 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYT 48 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchH
Confidence 3456888899999999999999999999999764
No 64
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00028 Score=73.21 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=43.0
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i~~ 373 (507)
-|+|++|+|||+|.. +.+|+|+|.|+|-=..- .++.+++-+++++++.++.
T Consensus 193 ~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg 245 (335)
T COG0016 193 IKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFG 245 (335)
T ss_pred ceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcC
Confidence 489999999999999 99999999999953332 3578888888888888874
No 65
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.42 E-value=0.0014 Score=66.25 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=35.9
Q ss_pred cEEEEeeccccCCCCCCC---CccccccccccccCCCHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSR---HLAEFWMVEPEMAFSDLKDDMNCAEAYVK 369 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~r---Hl~EFtmLE~E~af~d~~dlm~~~E~li~ 369 (507)
|+|++++|||.|.. +.+ =.-||+|.|.+....+.++..+.++.++.
T Consensus 121 rl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~ 169 (264)
T cd00772 121 HLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLS 169 (264)
T ss_pred eEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHH
Confidence 89999999999954 322 23499999998876888888777777774
No 66
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=97.42 E-value=0.00041 Score=71.23 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
-.+++..|...+++.+.+.||.||.||+|...+
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~ 61 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKE 61 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHH
Confidence 357889999999999999999999999998763
No 67
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.42 E-value=0.00063 Score=73.82 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=40.8
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i 371 (507)
|+|+||+|||+|.. +.+|+|||.|+|.-... .++.+++.+++++++.+
T Consensus 344 k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 344 RYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred EEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 99999999999999 99999999999976654 35788887777777664
No 68
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=97.41 E-value=0.00046 Score=75.66 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=41.8
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
-|+|+||+|||+|.. +..|++||+|+++.+... ++.+++.++++++..+
T Consensus 351 ~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~elkg~l~~ll~~l 401 (489)
T PRK04172 351 QKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDLLGILKEFYKRL 401 (489)
T ss_pred eEEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHHHHHHHHHHHHh
Confidence 399999999999988 778889999999999885 4678888888877655
No 69
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=97.40 E-value=0.00024 Score=71.24 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhCC--cEEEccCeeecCCCCCCccccee
Q 010544 165 VARIRNALAYATHTFLQKQG--FLYIHTPIITTSDCEGAGEMFQV 207 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~--f~ev~TPil~~~~~ega~~~f~v 207 (507)
-.++|..|...+|+.|...| |.||.||+|.+. ++|.+
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~ 69 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKT 69 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHhee
Confidence 46889999999999999885 999999999886 56665
No 70
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.0012 Score=73.69 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-++++..|...+|+.|++.||.||.||+|...
T Consensus 45 ~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~ 77 (565)
T PRK09194 45 LGLRVLRKIENIVREEMNKIGAQEVLMPALQPA 77 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECcccCcH
Confidence 446899999999999999999999999999865
No 71
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=97.37 E-value=0.0012 Score=73.67 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|.+.+|+.|.+.||.||.||+|.+.
T Consensus 44 P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~ 77 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPA 77 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchH
Confidence 3456889999999999999999999999999985
No 72
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.36 E-value=0.0011 Score=71.28 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
..-.++..+|++.+++.+.+.||.||.||.|...+
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~ 204 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEE 204 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 35678899999999999999999999999998863
No 73
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.31 E-value=0.00096 Score=71.90 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.1
Q ss_pred ceeeEeechhhhHHHHhh-------ccC-cEEEEeeccccCCCC------CCCCccccccccccccCCCHHHHHHHHHHH
Q 010544 302 RQAFLTVSGQLQVETYAC-------AVS-NVYTFGPTFRAEHSH------TSRHLAEFWMVEPEMAFSDLKDDMNCAEAY 367 (507)
Q Consensus 302 ~~~yL~~S~Ql~le~l~~-------g~~-rVfeI~p~FRaE~~~------t~rHl~EFtmLE~E~af~d~~dlm~~~E~l 367 (507)
.+.||....+..+=.+.. .+. |+|++++|||.|-.. +--=..||+|.|.+ .|..-++..+..+++
T Consensus 223 ~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~ 301 (425)
T PRK05431 223 DDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEEL 301 (425)
T ss_pred CCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHH
Confidence 345677666655532221 133 899999999999741 11122499999998 677777777777777
Q ss_pred HHHHH
Q 010544 368 VKFMC 372 (507)
Q Consensus 368 i~~i~ 372 (507)
+...-
T Consensus 302 l~~~~ 306 (425)
T PRK05431 302 TANAE 306 (425)
T ss_pred HHHHH
Confidence 75443
No 74
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.29 E-value=0.00091 Score=68.69 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++.+|.+.+++.+.+.||.||.||.|...
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~ 82 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRK 82 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccH
Confidence 457899999999999999999999999999876
No 75
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.27 E-value=0.00094 Score=71.11 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=46.0
Q ss_pred HHhhccCcEEEEeeccccCCCCCCCCccccccccccccC--------------CCHHHHHHHHHHHHHHHHH
Q 010544 316 TYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--------------SDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 316 ~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--------------~d~~dlm~~~E~li~~i~~ 373 (507)
+|..+-.|++.+|+|||++.. +.+|.|+|.|+|.-+.+ ....++...+|.+++.++.
T Consensus 142 ~l~~~~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg 212 (402)
T PLN02788 142 LLRAGHTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFG 212 (402)
T ss_pred HHHhCCCcEEEEeeEeecCCC-CcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhcC
Confidence 344456799999999999999 99999999999987765 3456777788888876654
No 76
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.25 E-value=0.0013 Score=70.99 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
..-...|..|...+++.|...||.||.||++...+
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e 49 (430)
T CHL00201 15 PDEINYWQFIHDKALTLLSLANYSEIRTPIFENSS 49 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHH
Confidence 34467899999999999999999999999998753
No 77
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.18 E-value=0.00057 Score=74.59 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=38.3
Q ss_pred cEEEEeeccccCCCCCC--CCccccccccccccCCCHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~--rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i 371 (507)
|+||+++|||+|...+. -=.-||+|.|.+..|.+.++..+.++.++...
T Consensus 127 r~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 127 KINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIY 177 (472)
T ss_pred HHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 78999999999987321 12359999999999999888877777776543
No 78
>PLN02530 histidine-tRNA ligase
Probab=97.16 E-value=0.0019 Score=70.73 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+.|..|...+++.|...||.||.||+|...
T Consensus 81 p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~ 114 (487)
T PLN02530 81 PEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESE 114 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchH
Confidence 4456889999999999999999999999999874
No 79
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.16 E-value=0.0018 Score=66.06 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
..-.+.|..+.+.+++.|...||-||+||++...+
T Consensus 16 p~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e 50 (281)
T PRK12293 16 GKSAKLKREIENVASEILYENGFEEIVTPFFSYHQ 50 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehh
Confidence 34467889999999999999999999999998653
No 80
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.13 E-value=0.0019 Score=68.84 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
..-.+.|..+...+++.|.+.||.||.||++...
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~ 47 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYL 47 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhH
Confidence 3456789999999999999999999999999753
No 81
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.12 E-value=0.0022 Score=71.59 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+++.+.+.||.||.||+|...
T Consensus 203 p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~ 236 (575)
T PRK12305 203 PKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 3556899999999999999999999999999876
No 82
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.08 E-value=0.0028 Score=70.49 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+.+.+.||.||.||+|...
T Consensus 198 ~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~ 230 (563)
T TIGR00418 198 KGATIRNLLEDFVRQKQIKYGYMEVETPIMYDL 230 (563)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 456789999999999999999999999999865
No 83
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=97.08 E-value=0.0071 Score=48.94 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=56.6
Q ss_pred EEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEE
Q 010544 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 50 V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~ 127 (507)
++|.|-|.++|..++ +++|+.|.|.++ .+.+++-++.. .+...|..|+.|.|.|.+..... .+++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~-g~~~~~L~D~~~--~i~~~~f~~~~~~~~~~l~~g~~v~v~g~v~~~~~--~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSS-GHLYFTLKDEDA--SIRCVMWRSNARRLGFPLEEGMEVLVRGKVSFYEP--RGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCC-cEEEEEEEeCCe--EEEEEEEcchhhhCCCCCCCCCEEEEEEEEEEECC--CCEEEEEEEEEE
Confidence 679999999987444 599999999987 49998877643 23456899999999999986431 246788887764
No 84
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.06 E-value=0.0027 Score=71.89 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=35.1
Q ss_pred cEEEEeeccccCCCCC--C--CCccccccccccccCCCHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHT--S--RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t--~--rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i 371 (507)
|+|++|+|||.|.+.. . | .-||+|.|++ .|.+-+++...+++++..+
T Consensus 357 r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~~~~~~~ 407 (639)
T PRK12444 357 RMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIKSVMAQI 407 (639)
T ss_pred eeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHHHHHHHH
Confidence 8999999999998632 2 3 2489999999 7888777666655555443
No 85
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.02 E-value=0.0035 Score=70.75 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 162 ~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
...-.+++..|...+++.+...||.||.||+|...+
T Consensus 266 lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~ 301 (638)
T PRK00413 266 HPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRE 301 (638)
T ss_pred cccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHH
Confidence 345678899999999999999999999999998763
No 86
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0027 Score=68.34 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=35.7
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCCCH----HHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDL----KDDMNCAEAYVK 369 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~----~dlm~~~E~li~ 369 (507)
-|.|+++||||.|.....|-- ||+|+++|.-..+- -+++.++-+++.
T Consensus 102 ~k~yy~g~vfRyErPQ~GR~R-qF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~ 152 (429)
T COG0124 102 LKLYYFGPVFRYERPQKGRYR-QFYQFGVEVIGSDSPDADAEVIALAVEILE 152 (429)
T ss_pred eeEEEecceecCCCCCCCCce-eeEEcCeEEeCCCCcccCHHHHHHHHHHHH
Confidence 377999999999998888885 99999999987642 334555544443
No 87
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.92 E-value=0.015 Score=49.02 Aligned_cols=75 Identities=24% Similarity=0.177 Sum_probs=58.0
Q ss_pred EEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch----hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeE
Q 010544 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 50 V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~----~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~ 125 (507)
|++.|+|.++...+. -.=+.|.|+||. |-+.+...... ....+..|++|.|.|.+..-. +...|.+..
T Consensus 2 v~~vG~V~~~~~~~~--~~~~tL~D~TG~--I~~~~W~~~~~~~~~~~~~~~~g~~v~v~G~v~~~~----g~~ql~i~~ 73 (95)
T cd04478 2 VTLVGVVRNVEEQST--NITYTIDDGTGT--IEVRQWLDDDNDDSSEVEPIEEGTYVRVFGNLKSFQ----GKKSIMAFS 73 (95)
T ss_pred EEEEEEEEeeeEccc--EEEEEEECCCCc--EEEEEeCCCCCcccccccccccCCEEEEEEEEcccC----CeeEEEEEE
Confidence 789999999998873 344688999986 99988765432 245688999999999997765 367788888
Q ss_pred EEEeeCC
Q 010544 126 VVDVGMV 132 (507)
Q Consensus 126 i~vls~a 132 (507)
+..+...
T Consensus 74 i~~v~d~ 80 (95)
T cd04478 74 IRPVTDF 80 (95)
T ss_pred EEEeCCc
Confidence 8776653
No 88
>PLN02972 Histidyl-tRNA synthetase
Probab=96.89 E-value=0.0033 Score=71.73 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 160 NTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 160 ~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
+..-.-.+.|..|...+++.|...||.||+||++...
T Consensus 335 D~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~ 371 (763)
T PLN02972 335 DFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELR 371 (763)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccch
Confidence 3445667889999999999999999999999999754
No 89
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=96.89 E-value=0.0019 Score=70.71 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=37.9
Q ss_pred cEEEEeeccccCCCCCC--CCccccccccccccCCCHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSDLKDDMNCAEAYVK 369 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~--rHl~EFtmLE~E~af~d~~dlm~~~E~li~ 369 (507)
|+||+++|||.|.. ++ -=.-||+|.|.+..+.+.++..+.+++++.
T Consensus 133 rl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~ 180 (477)
T PRK08661 133 LYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLE 180 (477)
T ss_pred HHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHH
Confidence 78999999999987 44 234599999999999998888777777664
No 90
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=96.87 E-value=0.0017 Score=72.92 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=39.6
Q ss_pred cEEEEee-ccccCCCCC---CCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGP-TFRAEHSHT---SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 323 rVfeI~p-~FRaE~~~t---~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~ 373 (507)
|+||+|+ |||+|.+.. -.=+-||+|.|.+.-..+.++.++.+++++..+.+
T Consensus 310 r~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 310 KMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILE 364 (613)
T ss_pred hhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 7899999 999997622 22345899999998766678888888888776554
No 91
>PLN02908 threonyl-tRNA synthetase
Probab=96.87 E-value=0.0043 Score=70.84 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=37.9
Q ss_pred cEEEEeeccccCCCC---CCCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSH---TSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 323 rVfeI~p~FRaE~~~---t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~ 373 (507)
|+|++|+|||+|.+. +-.=.-||+|.|++. |...+++.+.+++++..+..
T Consensus 404 r~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~ 456 (686)
T PLN02908 404 RLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDY 456 (686)
T ss_pred hHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHH
Confidence 899999999999872 211234899999998 77778888888777655443
No 92
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=96.86 E-value=0.0053 Score=66.46 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.+++..|...+|+-|.+.||.||.||.|...
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~ 77 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPA 77 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 46899999999999999999999999999875
No 93
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=96.81 E-value=0.0049 Score=63.16 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
..-++.+..+...+++.|...||.+|+||++...
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~ 40 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYY 40 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeec
Confidence 4457889999999999999999999999999875
No 94
>PLN02837 threonine-tRNA ligase
Probab=96.80 E-value=0.0023 Score=72.10 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=38.0
Q ss_pred cEEEEeeccccCCCCC---CCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHT---SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t---~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~ 373 (507)
|++++|+|||+|.+.. --=.-||+|.|.+. |...++..+.+++++..+-.
T Consensus 331 r~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~ 383 (614)
T PLN02837 331 RVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEE 383 (614)
T ss_pred hhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 7899999999998621 11234899999996 98888888888877765443
No 95
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.79 E-value=0.005 Score=66.25 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
..-...+..|...+++.|...||.||.||+|...
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~ 48 (423)
T PRK12420 15 PEEQVLRNKIKRALEDVFERYGCKPLETPTLNMY 48 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchH
Confidence 4456789999999999999999999999999875
No 96
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.79 E-value=0.0066 Score=64.79 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
-.-.+.+..|...+++.|...||.||.||++...+
T Consensus 18 p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e 52 (392)
T PRK12421 18 PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLE 52 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHH
Confidence 34567899999999999999999999999998653
No 97
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=96.72 E-value=0.0053 Score=63.39 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+.|..|...+++.|.+.||.||+||+|...
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~ 38 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYL 38 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhH
Confidence 346789999999999999999999999999875
No 98
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=96.68 E-value=0.0062 Score=67.66 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=37.5
Q ss_pred cEEEEeeccccCCCCCC---CCccccccccccccCCCHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTS---RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~---rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~ 373 (507)
|.|++|+|||.|.+... -=.-||||.|+.. |+..+++.+.+.+++..+.+
T Consensus 251 R~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 251 RFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVE 303 (545)
T ss_pred hhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHH
Confidence 89999999999988431 1234999999998 88877776777666655544
No 99
>PLN02320 seryl-tRNA synthetase
Probab=96.62 E-value=0.0086 Score=65.58 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=36.3
Q ss_pred cEEEEeeccccCCCC-C-------CCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSH-T-------SRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 323 rVfeI~p~FRaE~~~-t-------~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~ 373 (507)
|++++|+|||.|-+. + +-| +|+++|.-. |...++..+..++|+..+..
T Consensus 315 Ry~~~s~cFR~EAgs~G~d~rGL~Rvh--QF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 315 KYVAFSHCFRTEAGAAGAATRGLYRVH--QFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred eeEEeccccccccccCCCcCCCceeee--eeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 899999999999551 2 235 899999965 66778888888887765544
No 100
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0013 Score=68.04 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=41.3
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKF 370 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~ 370 (507)
.|+|.|-++||||.. +.+||+||.|+|--.+.. ++.|+|-++++++..
T Consensus 334 ~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 334 AKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred ccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 589999999999999 999999999999877664 478898888777653
No 101
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=96.58 E-value=0.0066 Score=66.11 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=39.0
Q ss_pred cC-cEEEEeeccccCCCCCCCCc---cccccccccccCCCHHHHHHHHHHHHHHHHHH
Q 010544 321 VS-NVYTFGPTFRAEHSHTSRHL---AEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (507)
Q Consensus 321 ~~-rVfeI~p~FRaE~~~t~rHl---~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~ 374 (507)
+. |+.|+|+|||+|-+ +..-| -||+|.|.+ .|.+.+++.+.+..++..+...
T Consensus 185 LPlr~aq~g~~~RnE~s-~~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~~~~~ 240 (456)
T PRK04173 185 LPFGIAQIGKSFRNEIT-PRNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIELRKNW 240 (456)
T ss_pred CCeeeeEEchhHhCccC-CCCCceeeceeeeeEEE-EEECcChHHHHHHHHHHHHHHH
Confidence 44 89999999999987 53332 799999997 6888777776666666554443
No 102
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=96.51 E-value=0.032 Score=47.52 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=51.2
Q ss_pred EEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc---------------------hhcccCCCCcEEEEEEEEeC
Q 010544 52 VGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---------------------DLGQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 52 V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---------------------~~~~~L~~gs~V~V~G~v~~ 110 (507)
|.|+|.+++... .-.-+.|.|+||. |-+++..... .....+..|++|.|.|.+..
T Consensus 2 ivG~V~sv~~~~--~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERE--TFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecC--CeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec
Confidence 679999998877 4566788999995 9998875432 12345899999999999987
Q ss_pred CCCCCcceeEEEEeEEE
Q 010544 111 PPEGTKQKIELRVQKVV 127 (507)
Q Consensus 111 ~~~g~~~~~El~v~~i~ 127 (507)
=. +...|.++.+.
T Consensus 78 fr----g~~ql~i~~~~ 90 (92)
T cd04483 78 YR----GEREINASVVY 90 (92)
T ss_pred cC----CeeEEEEEEEE
Confidence 65 25667776654
No 103
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.26 E-value=0.052 Score=46.76 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch-hc-ccCCCCcEEEEEEEEeCCCCCCcceeEEEEe
Q 010544 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LG-QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQ 124 (507)
Q Consensus 47 g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~-~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~ 124 (507)
-..|.|.|=|.+.+.+++ +-+|+.|+|+. +.|++++-+.... .. ..+..|+-|.|.|.+.--+ ..|.+.+.++
T Consensus 21 ~~~vwV~GEIs~~~~~~~-gh~YftLkD~~--a~i~~~~~~~~~~~i~~~~l~~G~~V~v~g~~~~y~--~~G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSS-GHVYFTLKDEE--ASISCVIFRSRARRIRGFDLKDGDKVLVRGRVSFYE--PRGSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCC-ceEEEEEEcCC--cEEEEEEEHHHHhhCCCCCCCCCCEEEEEEEEEEEC--CCcEEEEEEE
Confidence 478999999999988544 68999999977 4799999876533 23 4688999999999997765 2467999998
Q ss_pred EEE
Q 010544 125 KVV 127 (507)
Q Consensus 125 ~i~ 127 (507)
+|+
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
No 104
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.07 E-value=0.02 Score=60.88 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 171 ALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 171 ~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
.+...+++.|...||.||+||++...+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e 35 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAE 35 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHH
Confidence 788899999999999999999997753
No 105
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.01 E-value=0.064 Score=43.71 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=54.2
Q ss_pred EEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEE
Q 010544 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVD 128 (507)
Q Consensus 50 V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~v 128 (507)
|.|.|=|.+.+..| +=.|+.|+|+.+ .|.+++-+... .....+..||-|.|.|.+.. +. |.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~--GHvyfsLkD~~a--~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~-~~---G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTS--GPTIFTLRDETG--TVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEP-RD---GQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCC--CCEEEEEEcCCE--EEEEEEEchhccCCcCCCCCCCEEEEEEEEec-CC---eEEEEEEeeEEE
Confidence 57889998765433 458899999875 59998765432 22345789999999999986 43 589999999987
Q ss_pred e
Q 010544 129 V 129 (507)
Q Consensus 129 l 129 (507)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 106
>PLN02678 seryl-tRNA synthetase
Probab=95.95 E-value=0.021 Score=62.00 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++.+|+..+++++.+.||+||.||.|...
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~ 204 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRK 204 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccH
Confidence 447899999999999999999999999999875
No 107
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.93 E-value=0.12 Score=41.67 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=48.0
Q ss_pred eeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCC
Q 010544 66 SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 66 kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a 132 (507)
.++++.|.|++|. +.+++-.+.......+..|..|.|.|.+.... +..++.+.++..+...
T Consensus 19 ~~~~~~l~D~tg~--i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~~----~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 19 PYLALTLQDKTGE--IEAKLWDASEEDEEKFKPGDIVHVKGRVEEYR----GRLQLKIQRIRLVTEE 79 (83)
T ss_pred cEEEEEEEcCCCe--EEEEEcCCChhhHhhCCCCCEEEEEEEEEEeC----CceeEEEEEEEECCcc
Confidence 6899999999986 99988765443345689999999999997632 3688888888877654
No 108
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.73 E-value=0.056 Score=43.28 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=51.2
Q ss_pred EEEEEEeee----ecCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 52 VGGWVKTGR----EQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 52 V~GwV~~iR----~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
+.|.|.+++ +.|+ +++++.|.|++|. +.+++-.... .+...+..|..|.|.|++.... +..++.+.++
T Consensus 2 i~g~v~~~~~~~~k~g~-~~~~~~l~D~tg~--~~~~~f~~~~~~~~~~l~~g~~v~v~G~v~~~~----~~~~l~~~~i 74 (84)
T cd04485 2 VAGLVTSVRRRRTKKGK-RMAFVTLEDLTGS--IEVVVFPETYEKYRDLLKEDALLLVEGKVERRD----GGLRLIAERI 74 (84)
T ss_pred EEEEEEEeEEEEcCCCC-EEEEEEEEeCCCe--EEEEECHHHHHHHHHHhcCCCEEEEEEEEEecC----CceEEEeecc
Confidence 566675542 2232 5899999999986 8888876442 2445688999999999998643 3688888776
Q ss_pred EEee
Q 010544 127 VDVG 130 (507)
Q Consensus 127 ~vls 130 (507)
..+.
T Consensus 75 ~~~~ 78 (84)
T cd04485 75 EDLE 78 (84)
T ss_pred ccHH
Confidence 5543
No 109
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=95.71 E-value=0.012 Score=63.58 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=43.9
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
-|+|++|+|||+|...+.+|+++|.|+|.=.+.. ++.|++.+++.+++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4999999999999754789999999999877765 4899999999999887
No 110
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.061 Score=52.08 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=65.2
Q ss_pred ccceehhhhhcCCCCCCC---C-CC---CEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch---hcccC
Q 010544 27 SDRVLIKSILTRPDGGAG---L-AG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLV 96 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~---~-~g---~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~---~~~~L 96 (507)
-+.++||+|+.|-..-.+ . .+ ..|.+.|||+++..+- .-+|+.|.||+|. |-|-..+.... ..+.+
T Consensus 39 LrpvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~t--tn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d~ 114 (258)
T COG5235 39 LRPVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTST--TNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKDL 114 (258)
T ss_pred eeeeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecc--cceEEEEecCCce--EEEEecCCCchHHHhcccc
Confidence 346999999987221111 1 12 2488999999999998 5688999999996 88888776532 23445
Q ss_pred CCCcEEEEEEEEeCCCCCCcceeEEEEeEEEE
Q 010544 97 PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVD 128 (507)
Q Consensus 97 ~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~v 128 (507)
.-+-.|.|.|.++.=. |...|...-|.-
T Consensus 115 ~~~~yvkV~G~lk~F~----GK~~I~~~~i~~ 142 (258)
T COG5235 115 EEQNYVKVNGSLKTFN----GKRSISASHISA 142 (258)
T ss_pred ccccEEEEecceeeeC----CeeEEehhheee
Confidence 6677999999998754 355566554433
No 111
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=95.69 E-value=0.11 Score=45.35 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=52.5
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGM 107 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~ 107 (507)
...+++++.. ...++.|+|.|.|.+.-..- +- .++|++|. |+|-++.+... ...+++++-|.|.|.
T Consensus 21 ~~~TV~~a~~------~~Dd~~V~L~G~Iv~~l~~d--~Y---~F~D~TG~--I~VeId~~~w~-g~~vt~~~~Vri~Ge 86 (103)
T PF04076_consen 21 TVTTVAQAKN------AKDDTPVTLEGNIVKQLGDD--KY---LFRDATGE--IEVEIDDDVWR-GQTVTPDDKVRISGE 86 (103)
T ss_dssp ----HHHHTT------S-SSEEEEEEEEEEEEEETT--EE---EEEETTEE--EEEE--GGGST-T----TTSEEEEEEE
T ss_pred CeEeHHHHhh------CcCCCeEEEEEEEEEEecCC--EE---EEECCCCc--EEEEEChhhcC-CcccCCCCEEEEEEE
Confidence 3467888763 45788999999987543322 33 45999984 99998887532 345889999999999
Q ss_pred EeCCCCCCcceeEEEEeEEE
Q 010544 108 LKNPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 108 v~~~~~g~~~~~El~v~~i~ 127 (507)
|-+.- ...||.|.+|+
T Consensus 87 VDk~~----~~~~IdV~~I~ 102 (103)
T PF04076_consen 87 VDKDW----NKTEIDVDRIE 102 (103)
T ss_dssp EEEET----TEEEEEEEEEE
T ss_pred EeCCC----CceEEEEEEEE
Confidence 98543 36888888774
No 112
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.67 E-value=0.12 Score=42.62 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=51.6
Q ss_pred EEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc---hhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 50 V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
|.++|-|.++|..++|+. |+.|.|.+|. +.+++-++.. .+...|..+.+|.|+|.+... + + .+.++++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~--~Ev~~F~~~~~~~~~~~~l~~d~~v~v~g~v~~~--~---~-~l~~~~I 72 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGR--ITVLLTKDKEELFEEAEDILPDEVIGVSGTVSKD--G---G-LIFADEI 72 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCE--EEEEEeCchhhhhhhhhhccCCCEEEEEEEEecC--C---C-EEEEEEe
Confidence 688999999986566567 9999999985 9999877653 234568889999999999552 2 3 5666644
No 113
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=95.47 E-value=0.13 Score=39.55 Aligned_cols=69 Identities=23% Similarity=0.413 Sum_probs=50.8
Q ss_pred EEEEEEEeeeecC--CceeEEEEEEcCC-CCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 51 RVGGWVKTGREQG--KGSFAFLEVNDGS-CPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 51 ~V~GwV~~iR~~g--~~kl~Fi~LrD~s-g~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
++.|.|.+++... + ..+++.|.|++ + .+.+++-.+... +...+..|+.|.|.|.+.... +...+.+.++
T Consensus 1 ~v~g~v~~~~~~~~~~-~~~~~~l~D~~~~--~i~~~~~~~~~~~~~~~~~~g~~v~v~g~v~~~~----~~~~l~~~~~ 73 (75)
T cd03524 1 TIVGIVVAVEEIRTEG-KVLIFTLTDGTGG--TIRVTLFGELAEELENLLKEGQVVYIKGKVKKFR----GRLQLIVESI 73 (75)
T ss_pred CeEEEEEeecccccCC-eEEEEEEEcCCCC--EEEEEEEchHHHHHHhhccCCCEEEEEEEEEecC----CeEEEEeeee
Confidence 3678888886553 3 68999999999 6 499988876432 334688999999999997643 3577777644
No 114
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.037 Score=60.73 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=65.3
Q ss_pred ccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEE-e-CCcchhcccCCCCcEE
Q 010544 25 QFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIV-D-KDVADLGQLVPTGTCV 102 (507)
Q Consensus 25 ~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv-~-~~~~~~~~~L~~gs~V 102 (507)
.-..|+.|.+|- +..|++|+|.|-|..++.-+ +-+-+.|+|++|. +++-. . .+.-.+ -.+..|++|
T Consensus 198 ke~~r~~i~~id-------~~ig~tV~I~GeV~qikqT~--GPTVFtltDetg~--i~aAAFe~aGvRAy-P~IevGdiV 265 (715)
T COG1107 198 KELPRTLIDDLD-------EMIGKTVRIEGEVTQIKQTS--GPTVFTLTDETGA--IWAAAFEEAGVRAY-PEIEVGDIV 265 (715)
T ss_pred hhcccccHHHHH-------hhcCceEEEEEEEEEEEEcC--CCEEEEEecCCCc--eehhhhccCCcccC-CCCCCCceE
Confidence 334567788885 37999999999999998887 6788899999986 77642 1 221112 347899999
Q ss_pred EEEEEEeCCCCCCcceeEEEEeEEEEee
Q 010544 103 YVEGMLKNPPEGTKQKIELRVQKVVDVG 130 (507)
Q Consensus 103 ~V~G~v~~~~~g~~~~~El~v~~i~vls 130 (507)
.|+|.|.... | .+-|.+..++.|.
T Consensus 266 ~ViG~V~~r~-g---~lQiE~~~me~L~ 289 (715)
T COG1107 266 EVIGEVTRRD-G---RLQIEIEAMEKLT 289 (715)
T ss_pred EEEEEEeecC-C---cEEEeehhhHHhh
Confidence 9999998875 3 4555555565544
No 115
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.048 Score=58.62 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
..++--++++.+=++..++||+|+.+|.|....
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e 205 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLE 205 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHH
Confidence 345556677777778889999999999999764
No 116
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=95.29 E-value=0.25 Score=44.67 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=58.5
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGML 108 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v 108 (507)
-.++++... ...+..|++.|.|.+.-..- . ..++|++|. |+|-++.+... ...++++|-|.|.|.|
T Consensus 45 ~~tV~~a~~------~~Ddt~V~L~G~Iv~~l~~d--~---Y~F~D~TG~--I~VeId~~~w~-G~~v~p~d~V~I~GeV 110 (126)
T TIGR00156 45 KMTVDFAKS------MHDGASVTLRGNIISHIGDD--R---YVFRDKSGE--INVVIPAAVWN-GREVQPKDMVNISGSL 110 (126)
T ss_pred eEeHHHHhh------CCCCCEEEEEEEEEEEeCCc--e---EEEECCCCC--EEEEECHHHcC-CCcCCCCCEEEEEEEE
Confidence 467777763 35788999999997543222 2 446999985 99999876521 2358899999999999
Q ss_pred eCCCCCCcceeEEEEeEEE
Q 010544 109 KNPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 109 ~~~~~g~~~~~El~v~~i~ 127 (507)
-+.- +..||.|.+|+
T Consensus 111 Dk~~----~~~~IdV~~I~ 125 (126)
T TIGR00156 111 DKKS----APAEVDVTHIQ 125 (126)
T ss_pred CCCC----CCeEEEEEEEE
Confidence 8543 25788887775
No 117
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=94.97 E-value=0.28 Score=43.89 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=61.2
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGML 108 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v 108 (507)
..++++-.+ -..+..|++.|-|. |..|.. . +..||+||. |+|.++....+ ...+++.|-|.+.|.+
T Consensus 45 ~~TV~~Ak~------~~Dda~V~l~GnIv--~qi~~D--~-y~FrD~sGe--I~VeIdd~~w~-g~tv~P~dkV~I~Gev 110 (128)
T COG3111 45 VTTVDQAKT------LHDDAWVSLEGNIV--RQIGDD--R-YVFRDASGE--INVDIDDKVWN-GQTVTPKDKVRIQGEV 110 (128)
T ss_pred eeEHHHhhc------cccCCeEEEEeeEE--EeeCCc--e-EEEEcCCcc--EEEEecccccC-CcccCcccEEEEEeEE
Confidence 567776653 45688999999986 444422 3 345999985 99999987632 3458999999999999
Q ss_pred eCCCCCCcceeEEEEeEEEEe
Q 010544 109 KNPPEGTKQKIELRVQKVVDV 129 (507)
Q Consensus 109 ~~~~~g~~~~~El~v~~i~vl 129 (507)
-+.-. ..||.|..|+.+
T Consensus 111 Dk~~~----~~eIdV~~I~k~ 127 (128)
T COG3111 111 DKDWN----SVEIDVKHIEKL 127 (128)
T ss_pred cCCCc----cceeEhhheEec
Confidence 77532 688988888765
No 118
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=94.82 E-value=0.3 Score=41.42 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=53.9
Q ss_pred EEEEEEEEeeeec-CCceeEEEEEEcCCCCceEEEEEeCCc---chhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeE
Q 010544 50 VRVGGWVKTGREQ-GKGSFAFLEVNDGSCPANLQVIVDKDV---ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 50 V~V~GwV~~iR~~-g~~kl~Fi~LrD~sg~~~IQvVv~~~~---~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~ 125 (507)
++|.|.|.+.+.+ .+ .=.|+.|.|.++ .|.+++-+.. ......|..||-|.|.|.+..-. .|.+++
T Consensus 1 ~~v~GeVs~~~~~~~s-GH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~~y~-------ql~ve~ 70 (91)
T cd04482 1 YRVTGKVVEEPRTIEG-GHVFFKISDGTG--EIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVRPGT-------TLNLEK 70 (91)
T ss_pred CEEEEEEeCCeecCCC-CCEEEEEECCCc--EEEEEEECcccccccccCCCCCCCEEEEEEEEecCC-------EEEEEE
Confidence 3689999988654 32 458889999886 4898775543 12345689999999999986532 589999
Q ss_pred EEEeeCC
Q 010544 126 VVDVGMV 132 (507)
Q Consensus 126 i~vls~a 132 (507)
+++++..
T Consensus 71 l~~~glg 77 (91)
T cd04482 71 LRVIRLA 77 (91)
T ss_pred EEECCCc
Confidence 9987764
No 119
>PRK10053 hypothetical protein; Provisional
Probab=94.81 E-value=0.36 Score=43.85 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=58.4
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEe
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLK 109 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~ 109 (507)
+++++... -..+..|++.|.|.+ ..|..+ ...||++|. |+|-++.+.. ....+++++-|.+.|.|-
T Consensus 50 ~tV~~a~~------~~Dd~~V~L~G~Iv~--~lg~d~---Y~F~D~tG~--I~VeID~~~w-~G~~v~p~~kV~I~GevD 115 (130)
T PRK10053 50 MTVEQAKT------MHDGATVSLRGNLID--HKGDDR---YVFRDKSGE--INVIIPAAVF-DGREVQPDQMININGSLD 115 (130)
T ss_pred EEHHHhhc------CcCCCeEEEEEEEEE--EeCCce---EEEECCCCc--EEEEeCHHHc-CCCcCCCCCEEEEEEEEC
Confidence 47777663 457889999999964 334223 345999985 9999988753 134689999999999997
Q ss_pred CCCCCCcceeEEEEeEEE
Q 010544 110 NPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 110 ~~~~g~~~~~El~v~~i~ 127 (507)
+.- ...||.|++|+
T Consensus 116 k~~----~~~~IdV~~i~ 129 (130)
T PRK10053 116 KKS----APPVVRVTHLQ 129 (130)
T ss_pred CCC----CCeEEEEEEEe
Confidence 653 25788888775
No 120
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=94.74 E-value=0.25 Score=49.88 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=54.2
Q ss_pred CEEEEEEEEEeeeec----CCceeEEEEEEcCCCCceEEEEEeCCcch---h-cccCCCCcEEEEEEEEeCCCCCCccee
Q 010544 48 RQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDVAD---L-GQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (507)
Q Consensus 48 ~~V~V~GwV~~iR~~----g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~---~-~~~L~~gs~V~V~G~v~~~~~g~~~~~ 119 (507)
+.|+|.|.|..+... . +.+|+.|-|+||...|.+++..+... . ...+ .|++|.|.|++. . +..
T Consensus 67 ~~v~i~G~Vv~~~~~~~~~~--~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~~-~G~~V~VkG~vs-r-----~~~ 137 (256)
T PF10451_consen 67 RWVRIVGVVVGIDYKWIENE--DRIILTIDDSSGANTIECKCSKSSYLSMGLPINDL-IGKVVEVKGTVS-R-----NER 137 (256)
T ss_dssp -EEEEEEEEEEEEEEE-BBT--CEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT--TT-EEEEEEEEE-S-----SSE
T ss_pred EEEEEEEEEEEEEEEeeccc--ceEEEEEeCCCCceeEEEEEEcccccccCCCccCC-CCcEEEEEEEEc-c-----CcE
Confidence 359999999998755 4 68999999999933599988865321 1 1234 899999999999 2 368
Q ss_pred EEEEeEEEEeeC
Q 010544 120 ELRVQKVVDVGM 131 (507)
Q Consensus 120 El~v~~i~vls~ 131 (507)
++.++.+.++..
T Consensus 138 ql~ve~i~~~~~ 149 (256)
T PF10451_consen 138 QLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEETS
T ss_pred EEEEEEEEccCC
Confidence 899999987754
No 121
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=94.66 E-value=0.16 Score=55.34 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCCEEEEEEEEEeeeec----CCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 46 AGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~----g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
.|+.|+|.|.|.++|.. |+ .++|+.|.|.+|. +.+++-++.. .+...|..+.+|.|+|++.... +++.
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~-~maf~~leD~tG~--ie~vvFp~~y~~~~~~l~~~~~v~v~G~v~~~~----~~~~ 351 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGD-PMAFLQLEDLSGQ--SEAVVFPKSYERISELLQVDARLIIWGKVDRRD----DQVQ 351 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCC-EEEEEEEEECCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEE
Confidence 57899999999998654 32 6999999999986 9999877653 2445688999999999997642 3577
Q ss_pred EEEeEEEEee
Q 010544 121 LRVQKVVDVG 130 (507)
Q Consensus 121 l~v~~i~vls 130 (507)
+.++++.-+.
T Consensus 352 liv~~i~~l~ 361 (449)
T PRK07373 352 LIVEDAEPIE 361 (449)
T ss_pred EEEeEeecHh
Confidence 8887775443
No 122
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=94.53 E-value=0.16 Score=48.72 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=56.7
Q ss_pred CCCCCEEEEEEEEEeee-ecCCceeEEEEEEcCCCCceEEEEEeCCcchhc------ccCCCCcEEEEEEEEeCCCCCCc
Q 010544 44 GLAGRQVRVGGWVKTGR-EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG------QLVPTGTCVYVEGMLKNPPEGTK 116 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~iR-~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~------~~L~~gs~V~V~G~v~~~~~g~~ 116 (507)
..+.+.|+|.|-|.+.+ ..|. ++.++.|.|++|. |-+++..+..... -.+..|.+|+|+|.+..-+ |
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~-gi~~l~lndgtGt--i~vva~~~tee~l~~n~~~p~~~eGe~veVtGrv~~yr-G-- 121 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGG-GIESLVLNDGTGT--ITVVASRSTEETLELNEGMPVTVEGEIVEVTGRVEEYR-G-- 121 (204)
T ss_pred ceeeccceeeeEEEeeeccccc-ceEEEEEECCCCc--EEEEEecChhHhHhhcCCCCccccCcEEEEEEEEEEeC-C--
Confidence 44677899999999987 4443 7999999999985 9998887654322 2456899999999998876 3
Q ss_pred ceeEEEEe
Q 010544 117 QKIELRVQ 124 (507)
Q Consensus 117 ~~~El~v~ 124 (507)
..||.+.
T Consensus 122 -~~eVkvn 128 (204)
T COG4085 122 -SSEVKVN 128 (204)
T ss_pred -Cceeecc
Confidence 5666665
No 123
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=94.17 E-value=0.95 Score=40.89 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=60.5
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeee-------ecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR-------EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTC 101 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR-------~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~ 101 (507)
.++|+||.. ....|.+.|.|.++. +.|.+.+.-+.|.|.||. |.+.+..+. ...+..||+
T Consensus 4 ~~kI~dL~~--------g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~--I~~tlW~~~---a~~l~~Gdv 70 (129)
T PRK06461 4 ITKIKDLKP--------GMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGR--VKLTLWGEQ---AGSLKEGEV 70 (129)
T ss_pred ceEHHHcCC--------CCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCE--EEEEEeCCc---cccCCCCCE
Confidence 578899862 126789999998431 223224777889999985 999988763 335789999
Q ss_pred EEEE-EEEeCCCCCCcceeEEEEeE---EEEeeC
Q 010544 102 VYVE-GMLKNPPEGTKQKIELRVQK---VVDVGM 131 (507)
Q Consensus 102 V~V~-G~v~~~~~g~~~~~El~v~~---i~vls~ 131 (507)
|.|. |.+..-. +.++|.+.+ +..+.+
T Consensus 71 V~I~na~v~~f~----G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 71 VEIENAWTTLYR----GKVQLNVGKYGSISESDD 100 (129)
T ss_pred EEEECcEEeeeC----CEEEEEECCCEEEEECCc
Confidence 9999 5665433 478899984 555554
No 124
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=93.40 E-value=0.23 Score=45.03 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=40.4
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhc--ccCCCCcEEEEEEEEeCC
Q 010544 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLG--QLVPTGTCVYVEGMLKNP 111 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~--~~L~~gs~V~V~G~v~~~ 111 (507)
.+.|+.|.|.|.|.+++... ++-.++...+..+...+++.++.+..... ..|..|+-|.|.|++..-
T Consensus 64 kY~gK~i~vtG~V~~I~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGF-GDNYVVLLGTENGFAGVQCYFSNDQEKRASVAKLKKGQKVTIKGICTGY 132 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-S-TT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH--TTSEEEEEEE----
T ss_pred hcCCCEEEEEEEEEEEEEcC-CCcEEEEccCCCCceeEEEEEccchhhhhhHhcCCCCCEEEEEEEEEee
Confidence 45799999999999997722 24567777776666679999887753322 248999999999998654
No 125
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=93.30 E-value=0.098 Score=57.73 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.1
Q ss_pred cEEE-EeeccccCC--CCCCCCccccccccccccCCCHHHHHHHHHHHHHHH
Q 010544 323 NVYT-FGPTFRAEH--SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfe-I~p~FRaE~--~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i 371 (507)
|+|+ .|+|||.|. .++-.=+-||+|.|.- .|.+.+++.+..++++.+.
T Consensus 337 rl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~e~ll~~~ 387 (517)
T PRK00960 337 KFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIRDELLKYA 387 (517)
T ss_pred HHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHHHHHHHHH
Confidence 7899 559999995 2222233499999998 7889999999999998443
No 126
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.30 E-value=0.16 Score=56.84 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=37.7
Q ss_pred CcEEEEeeccccCCCCCC----CCccccccccccccCCCHHHHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTS----RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~----rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~ 374 (507)
-|++++|.|||.|.+ +. +=+-+|||=|.-. |+..+++.+.+.+.+..+..-
T Consensus 302 ~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v 356 (589)
T COG0441 302 LRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEV 356 (589)
T ss_pred hhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHH
Confidence 388999999999976 43 3457899998755 566777777777777665543
No 127
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=93.27 E-value=0.29 Score=58.55 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=62.2
Q ss_pred CCCEEEEEEEEEeeeec--CCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeEEE
Q 010544 46 AGRQVRVGGWVKTGREQ--GKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELR 122 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~--g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~ 122 (507)
.|..|+|+|.|..++.. +|| ++|+.|.|.+|. +.+++-++.. .+...|..|.++.|+|++.... +.+.+.
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkG-maf~~leD~~g~--~e~~ifp~~~~~~~~~l~~~~~~~v~g~v~~~~----~~~~~~ 1024 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASG-VTFLTLEDETGM--VNVVVWPGLWERQRREALGARLLLVRGRVQNAE----GVRHLV 1024 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCc-eEEEEEecCCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEEEE
Confidence 57889999999988665 554 999999999986 9999887753 2345688999999999997642 357788
Q ss_pred EeEEEEeeC
Q 010544 123 VQKVVDVGM 131 (507)
Q Consensus 123 v~~i~vls~ 131 (507)
++++.-+..
T Consensus 1025 ~~~i~~~~~ 1033 (1046)
T PRK05672 1025 ADRLEDLSP 1033 (1046)
T ss_pred EeeeechHH
Confidence 888765544
No 128
>PRK15491 replication factor A; Provisional
Probab=93.17 E-value=0.54 Score=50.07 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEee---e----ecC-CceeEEEEEEcCCCCceEEEEEeCCcch-hc-ccCCC
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVAD-LG-QLVPT 98 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R----~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~-~~L~~ 98 (507)
-++|++|.. ..+.|+|.|||.++ | +-| .|++.=+.|-|.||. |++++..+..+ +. ..|..
T Consensus 57 ~~kI~dL~~--------~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~--ir~tlW~~~a~~~~~~~le~ 126 (374)
T PRK15491 57 TTKIADINE--------SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGS--IRLTLWDDLADLIKTGDIEV 126 (374)
T ss_pred cccHHHCCC--------CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCe--EEEEEECchhhhhccCCcCC
Confidence 457888862 34789999999876 3 334 447777899999985 99999987654 22 35899
Q ss_pred CcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 99 GTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 99 gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
|+++.|.|.++..- +++||.+.+-..+.+++
T Consensus 127 G~v~~I~~~~~~~y----~g~Ei~i~~~~~i~~~~ 157 (374)
T PRK15491 127 GKSLNISGYAKEGY----SGIEVNIGRYGGISESD 157 (374)
T ss_pred CCEEEEeeeeccCc----ccEEEEeCCCceeeecc
Confidence 99999999865433 24899998888888875
No 129
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=93.13 E-value=0.59 Score=47.62 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
+.-+.-|..+.+.+++.|.+.||-||.||++-..
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~ 37 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKL 37 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhH
Confidence 3445667788999999999999999999999654
No 130
>PRK14699 replication factor A; Provisional
Probab=92.66 E-value=0.83 Score=50.28 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=67.2
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee-------eecC-CceeEEEEEEcCCCCceEEEEEeCCcchhcc--cCCCC
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG-------REQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQ--LVPTG 99 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i-------R~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~--~L~~g 99 (507)
.+|++|.. .++.|++.|+|.++ |..| .|+++=+.|-|.||. |.+++..+..+... .|..|
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~--ir~tlW~~~a~~~~~g~l~~G 127 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGK--IKLTLWDNMADLIKAGKIKAG 127 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCe--EEEEEecCccchhhhcCCCCC
Confidence 57888862 35789999999887 3334 336666789999985 99999987643322 48999
Q ss_pred cEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCC
Q 010544 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI 139 (507)
Q Consensus 100 s~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl 139 (507)
|+|.|.|.++.-. ++.||.+.+..++.+++ ...++
T Consensus 128 Dvv~I~~~~r~~~----~g~el~~~~~~~i~~~~-~~i~v 162 (484)
T PRK14699 128 QTLQISGYAKQGY----SGVEVNIGNNGVLTESE-EEIDV 162 (484)
T ss_pred CEEEEcceeccCC----CCceEEeCCCceeeccC-ccccc
Confidence 9999999754332 34789887767777654 33444
No 131
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.43 E-value=0.51 Score=56.98 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=61.1
Q ss_pred CCCEEEEEEEEEeeeecC--Cc-eeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTGREQG--KG-SFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g--~~-kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
.|+.|+|.|.|.++|... +| .++|+.|.|.+|. +.+++-++.. .+...|..|.+|.|+|++..... +.+.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~~~~~~~~~l~~~~~~~v~g~v~~~~~---~~~~~ 1064 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPKVYEKYRSLLNEDNIVLIKGRVSLRED---EEPKL 1064 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecCC---CceEE
Confidence 478899999999886432 22 4999999999986 9999887653 24456889999999999975432 35778
Q ss_pred EEeEEEEeeC
Q 010544 122 RVQKVVDVGM 131 (507)
Q Consensus 122 ~v~~i~vls~ 131 (507)
.++++.-+..
T Consensus 1065 ~~~~~~~l~~ 1074 (1151)
T PRK06826 1065 ICEEIEPLVI 1074 (1151)
T ss_pred EEeeeecHhh
Confidence 8887765543
No 132
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=92.14 E-value=0.55 Score=56.80 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCEEEEEEEEEeeeecC--C-ceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTGREQG--K-GSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g--~-~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
.|+.|+|.|.|.++|... + +.++|+.|.|.+|. +.+++-++.. .+...|..|.+|.|+|++.... +.+.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~~y~~~~~~l~~~~~~~v~g~v~~~~----~~~~~ 1072 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPKSYERLSDHLMTDTRLLVWAKVDRRD----DRVQL 1072 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEEE
Confidence 578999999999886442 1 15999999999986 9999887653 2345688999999999997643 35778
Q ss_pred EEeEEEEee
Q 010544 122 RVQKVVDVG 130 (507)
Q Consensus 122 ~v~~i~vls 130 (507)
.++++.-+.
T Consensus 1073 ~~~~i~~l~ 1081 (1170)
T PRK07374 1073 IIDDCREID 1081 (1170)
T ss_pred EEeeeecHh
Confidence 887776554
No 133
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=92.05 E-value=1.2 Score=38.58 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=52.5
Q ss_pred CEEEEEEEEEe---eeecC----CceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEE-eCCCCC---C
Q 010544 48 RQVRVGGWVKT---GREQG----KGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGML-KNPPEG---T 115 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g----~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v-~~~~~g---~ 115 (507)
..++|+|||.+ +|... .|++.-++|.|..|. .|++.+-.+.. .|...|..|+++.+.|-- +..... .
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~~-~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~~~ 88 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDGG-EIRATFFNDAVDKFYDLLEVGKVYYISKGSVKVANKKFNTL 88 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCCC-EEEEEEehHHHHHhhcccccccEEEEeccEEeeccccCCCC
Confidence 46899999975 33221 137889999999553 69999987653 366789999999997744 333211 2
Q ss_pred cceeEEEEe
Q 010544 116 KQKIELRVQ 124 (507)
Q Consensus 116 ~~~~El~v~ 124 (507)
..++||...
T Consensus 89 ~~~yeI~f~ 97 (104)
T cd04474 89 KNDYEITFN 97 (104)
T ss_pred CCcEEEEEC
Confidence 457777665
No 134
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=91.90 E-value=1.3 Score=46.03 Aligned_cols=80 Identities=21% Similarity=0.153 Sum_probs=58.0
Q ss_pred CCCEEEEEEEEEeee----ecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTGR----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR----~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
.|+.|..-.-|+++. +.|+ .-..+.|.|.||. |.+.+..........+..|++|.|.|.+..-+ |.+.+
T Consensus 10 ~g~~v~~~~lv~~~~~~~~knG~-~yl~l~l~D~tG~--I~ak~W~~~~~~~~~~~~g~vv~v~G~v~~y~----g~~Ql 82 (314)
T PRK13480 10 VGEQVDHFLLIKSATKGVASNGK-PFLTLILQDKSGD--IEAKLWDVSPEDEATYVPETIVHVKGDIINYR----GRKQL 82 (314)
T ss_pred CCCEeeEEEEEEEceeeecCCCC-eEEEEEEEcCCcE--EEEEeCCCChhhHhhcCCCCEEEEEEEEEEEC----CcceE
Confidence 366666666666542 2332 3666778999985 99998876544455688999999999998654 35678
Q ss_pred EEeEEEEeeCC
Q 010544 122 RVQKVVDVGMV 132 (507)
Q Consensus 122 ~v~~i~vls~a 132 (507)
.+.+++.+.+.
T Consensus 83 ~i~~i~~~~~~ 93 (314)
T PRK13480 83 KVNQIRLATEE 93 (314)
T ss_pred EEEEeEECCCC
Confidence 89999988775
No 135
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=91.71 E-value=0.64 Score=55.89 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=60.7
Q ss_pred CCCEEEEEEEEEeeeec----CCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 46 AGRQVRVGGWVKTGREQ----GKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~----g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
.|+.|+|.|.|..+|.. |+ +++|+.|.|.+|. +.+++-++.. .+...|..|.+|.|+|++.... +...
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~-~maf~~leD~tg~--~e~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~----~~~~ 1014 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQ-KMAFITFCDQNDE--MEAVVFPETYIHFSDKLQEGAIVLVDGTIELRN----HKLQ 1014 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCC-eEEEEEEeeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CcEE
Confidence 47789999999988543 33 6999999999986 9999887653 2445688999999999997642 3567
Q ss_pred EEEeEEEEeeC
Q 010544 121 LRVQKVVDVGM 131 (507)
Q Consensus 121 l~v~~i~vls~ 131 (507)
+.++++.-+..
T Consensus 1015 ~~~~~i~~l~~ 1025 (1107)
T PRK06920 1015 WIVNGLYPLEE 1025 (1107)
T ss_pred EEEeecccHHH
Confidence 88877765543
No 136
>PTZ00213 asparagine synthetase A; Provisional
Probab=91.37 E-value=9.4 Score=39.89 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=42.2
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhc
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLD 377 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~ 377 (507)
+.+|+=-++.|..+.-+..|.-=--|-|||+....-+.-++.+.+.++.|+..+..
T Consensus 93 eGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~ 148 (348)
T PTZ00213 93 EGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRK 148 (348)
T ss_pred ceeeeccccccCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence 67999777777654448999777789999999876666677777777777766544
No 137
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=91.33 E-value=2 Score=33.41 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=39.5
Q ss_pred EEEEEEeeee--c-CCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCC
Q 010544 52 VGGWVKTGRE--Q-GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 52 V~GwV~~iR~--~-g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
+.|.|.+++. . |+ ++.-+.+.|++|. +.++.=.......+.+..|+.+.|.|++....
T Consensus 2 i~~~V~~~~~~~~~~~-~~~~~~~~D~~g~--i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~~~ 62 (75)
T cd04488 2 VEGTVVSVEVVPRRGR-RRLKVTLSDGTGT--LTLVFFNFQPYLKKQLPPGTRVRVSGKVKRFR 62 (75)
T ss_pred EEEEEEEEEeccCCCc-cEEEEEEEcCCCE--EEEEEECCCHHHHhcCCCCCEEEEEEEEeecC
Confidence 5666655422 1 22 5777888999875 88877542222245688999999999998753
No 138
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=91.28 E-value=0.75 Score=55.59 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=61.9
Q ss_pred CCCEEEEEEEEEeeeecC--Cc-eeEEEEEEcCCCCceEEEEEeCCc-chhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTGREQG--KG-SFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g--~~-kl~Fi~LrD~sg~~~IQvVv~~~~-~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
.|+.|++.|.|.++|... +| .++|+.|.|.+|. +.+++-++. ..+...|..|++|.|+|++.... ++..+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~--iEvviFp~~ye~~~~~L~~g~iV~V~GkVe~~~----~~~ql 1049 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGR--IEVMLFSEALEKYRDLLEEDRIVVVKGQVSFDD----GGLRL 1049 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeEEE
Confidence 478999999999875532 22 5999999999986 999998765 23455688999999999997643 35778
Q ss_pred EEeEEEEeeC
Q 010544 122 RVQKVVDVGM 131 (507)
Q Consensus 122 ~v~~i~vls~ 131 (507)
.++++.-+.+
T Consensus 1050 ii~~I~~L~~ 1059 (1135)
T PRK05673 1050 TAREVMDLEE 1059 (1135)
T ss_pred EEeecccHHH
Confidence 8887766654
No 139
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=91.27 E-value=3.2 Score=35.84 Aligned_cols=69 Identities=23% Similarity=0.352 Sum_probs=48.3
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEE
Q 010544 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v 123 (507)
+..|+.|++-|+|.+.+... +.+.+..| ..++|.++... .+..+-+|+|.|++... ..|.+
T Consensus 12 ~f~gk~V~ivGkV~~~~~~~------~~~~~~Dg-~~v~v~l~~~~-----~~~~~~~vEViG~V~~~-------~~I~~ 72 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGDS------LTLISSDG-VNVTVELNRPL-----DLPISGYVEVIGKVSPD-------LTIRV 72 (101)
T ss_pred hhCCCEEEEEEEEEEecCCe------EEEEcCCC-CEEEEEeCCCC-----CcccCCEEEEEEEECCC-------CeEEE
Confidence 57899999999999886432 34454444 25999988753 35678899999999743 44666
Q ss_pred eEEEEeeC
Q 010544 124 QKVVDVGM 131 (507)
Q Consensus 124 ~~i~vls~ 131 (507)
....-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 65555554
No 140
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.05 E-value=1.1 Score=49.58 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred cEEEEeeccccCCCCCC--CCccccccccccccCCCHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTS--RHLAEFWMVEPEMAFSDLKDDMNCAEAYVK 369 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~--rHl~EFtmLE~E~af~d~~dlm~~~E~li~ 369 (507)
++|||...||+|.-.+. --.-||+|=|.|..++|.+++....++++.
T Consensus 131 ~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~ 179 (500)
T COG0442 131 KLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLD 179 (500)
T ss_pred ceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHH
Confidence 78999999999965232 244699999999999999999888887764
No 141
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=90.75 E-value=3.7 Score=37.18 Aligned_cols=88 Identities=25% Similarity=0.373 Sum_probs=52.8
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEE--eeeec-CCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVK--TGREQ-GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~--~iR~~-g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G 106 (507)
.+..++.. .....|+.|+|.|+|. ++... +.+.+.|. |.|+.. .+.|+.....++ ....|..|-|+|
T Consensus 37 ~t~se~~~----~~~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~~--~i~V~Y~G~~Pd---~F~eg~~VVv~G 106 (131)
T PF03100_consen 37 LTPSELAA----EPQKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGGK--EIPVVYTGPLPD---LFREGQGVVVEG 106 (131)
T ss_dssp E-TTTTTT----TST-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT---T--TTSEEEEEE
T ss_pred cCHHHHhh----ccccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECCc--EEEEEECCCCCc---cccCCCeEEEEE
Confidence 45566663 2234799999999998 66443 22378875 478854 599998876543 457899999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEeeCCCCCCC
Q 010544 107 MLKNPPEGTKQKIELRVQKVVDVGMVDPAKY 137 (507)
Q Consensus 107 ~v~~~~~g~~~~~El~v~~i~vls~a~~~~~ 137 (507)
.+.... .++++ ++|-+|+ +.|
T Consensus 107 ~~~~~g-------~F~A~--~lL~Kcp-skY 127 (131)
T PF03100_consen 107 RLGEDG-------VFEAT--ELLAKCP-SKY 127 (131)
T ss_dssp EECCTS-------EEEEE--EEEETS-----
T ss_pred EECCCC-------EEEEE--EEEeCCC-CCC
Confidence 993321 35565 6788886 344
No 142
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=90.57 E-value=1.5 Score=38.34 Aligned_cols=68 Identities=24% Similarity=0.257 Sum_probs=41.9
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGM 107 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~ 107 (507)
.|+.-+-|- +..|+.|+|-|+|.+....| +.+-+.-.|+. .++|.+.... .+..+.+|+|.|+
T Consensus 6 pRVn~~~L~-------~~~gk~VrivGkv~~~~~~g--~~~~l~~~d~~---~V~v~l~~~~-----~~~~~~~vEviG~ 68 (109)
T PF08661_consen 6 PRVNGSMLS-------QFVGKTVRIVGKVESVDPDG--GSATLSTSDGG---QVTVSLNPPS-----DEELSKYVEVIGK 68 (109)
T ss_dssp EEE-GGGGG-------GGTTSEEEEEEEEEEE-TTS--SEEEEE-TTS----EEEEEESS-------SS---SEEEEEEE
T ss_pred ceECHHHHH-------hhCCCeEEEEEEEeeEcCCC--CEEEEEcCCCC---EEEEEeCCCC-----CCCCCCEEEEEEE
Confidence 455555554 56899999999999998777 33333333553 5888877653 2346899999999
Q ss_pred EeCCC
Q 010544 108 LKNPP 112 (507)
Q Consensus 108 v~~~~ 112 (507)
+....
T Consensus 69 V~~~~ 73 (109)
T PF08661_consen 69 VNDDG 73 (109)
T ss_dssp E-TTS
T ss_pred EcCCC
Confidence 98654
No 143
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=90.30 E-value=8.5 Score=39.69 Aligned_cols=168 Identities=15% Similarity=0.046 Sum_probs=94.5
Q ss_pred EeechhhhHHHHhh--cc---CcEEEEeecccc-CCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhccc
Q 010544 306 LTVSGQLQVETYAC--AV---SNVYTFGPTFRA-EHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHC 379 (507)
Q Consensus 306 L~~S~Ql~le~l~~--g~---~rVfeI~p~FRa-E~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~ 379 (507)
..+|=--++.+.+. +| +.+|+=-.+.|. |+. +..|.-=--|-|||.....-+.-++.+.+.++.|+..+...-
T Consensus 61 iVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~te 139 (309)
T cd00645 61 VVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKETE 139 (309)
T ss_pred EeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHHHH
Confidence 45554334443332 45 678988888887 555 899987778999999987656667777777777776654421
Q ss_pred ccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccch-HHHHHHHHHHcCCCeEEE
Q 010544 380 FDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLAS-EHERYLTEVKFQKPVIVY 458 (507)
Q Consensus 380 ~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~-e~Er~L~e~~~~~P~fVt 458 (507)
.++...++. +...+.. .|+|-.+.+++..- -+|++ +.|..++..+ +.|||+
T Consensus 140 ----~~~~~~y~~-----~~~~Lp~---~i~FitsqeL~~~Y--------------P~l~~keRE~~i~ke~--gaVFi~ 191 (309)
T cd00645 140 ----LEVNEKYPQ-----LEPILPE---EITFITSQELEDRY--------------PDLTPKEREDAICKEH--GAVFII 191 (309)
T ss_pred ----HHHHHHchh-----hhhcCCC---ceEEecHHHHHHHC--------------CCCCHHHHHHHHHHHh--CcEEEE
Confidence 112222210 1111222 45554444444211 13443 4577788764 678887
Q ss_pred ecCCCCccceeee----cCCcCeEEEEEEEc-----CCceEEecccccccccccc
Q 010544 459 NYPKGIKAFYMRL----NDDLKTVAAMDVLV-----PKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 459 dyP~~~~Pfy~~~----~~d~~~~~rFDLl~-----pgg~EI~~GsqRe~~~~~l 504 (507)
.-=..++.= +++ ++-..+..+-|+++ ....||.+|+.|+++ +.|
T Consensus 192 ~IG~~L~~g-~~Hd~RapDYDDW~LNGDil~w~~~l~~a~ELSSmGiRVde-e~L 244 (309)
T cd00645 192 GIGGKLSDG-KKHDGRAPDYDDWTLNGDILVWNPVLQRAFELSSMGIRVDE-ESL 244 (309)
T ss_pred eccCcCCCC-CcCCCCCCCCcCccccceEEEEchhcCceeeecCcceEecH-HHH
Confidence 654433211 111 11112344455543 247899999999998 655
No 144
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=90.08 E-value=1.1 Score=53.34 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=56.8
Q ss_pred CCEEEEEEEEEeeee-----cCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 47 GRQVRVGGWVKTGRE-----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 47 g~~V~V~GwV~~iR~-----~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
++.+.+.|+|.++|. .|+ .++|+.|.|.+|. +.+++-++.. .+...|..|.+|.|+|++.... ++..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~-~maf~~leD~~g~--ie~~vFp~~y~~~~~~l~~~~~~~v~G~v~~~~----~~~~ 956 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQ-QMAFLSVTDTKKK--LDVTLFPETYRQYKDELKEGKFYYLKGKIQERD----GRLQ 956 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCC-eEEEEEEeeCCCc--EEEEECHHHHHHHHHHhccCCEEEEEEEEEecC----CeeE
Confidence 567889999987643 244 6999999999986 9999887652 2445688999999999997643 3567
Q ss_pred EEEeEEE
Q 010544 121 LRVQKVV 127 (507)
Q Consensus 121 l~v~~i~ 127 (507)
+.++++.
T Consensus 957 l~~~~i~ 963 (1034)
T PRK07279 957 MVLQQIQ 963 (1034)
T ss_pred EEEeeee
Confidence 7777664
No 145
>PRK15491 replication factor A; Provisional
Probab=89.73 E-value=3.9 Score=43.62 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=65.7
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeee-------cCC-ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCc
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE-------QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~-------~g~-~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs 100 (507)
..+|++|.. .+..|.|.|+|.++-. .|+ +++.=+.|.|.+|. |.+++..+..++...|..|+
T Consensus 166 ~~~I~dl~~--------~~~~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~--Ir~t~W~~~a~~~~~l~~Gd 235 (374)
T PRK15491 166 SQKISDIKD--------GDSDINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGK--IRVTLWDGKTDLADKLENGD 235 (374)
T ss_pred cccHHHcCC--------CCccEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCe--EEEEEecchhcccccCCCCC
Confidence 467888752 2345999999988632 342 35666899999985 99999887644335688999
Q ss_pred EEEEEE-EEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 101 CVYVEG-MLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 101 ~V~V~G-~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
+|.+.+ .++... -.+++||.+.+-..+.+|+
T Consensus 236 ~V~i~~~~~r~~~--~~g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 236 SVEIINGYARTNN--YSQEVEIQIGNHGSLRKTD 267 (374)
T ss_pred EEEEEeceEEEec--cCCCEEEEeCCCceEEECC
Confidence 999966 465433 2358999987666677764
No 146
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=89.47 E-value=1.6 Score=48.88 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=35.9
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVK 369 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~ 369 (507)
|+||||+||+.+.. +..|..|++++-+-++.. |+.++...+|.++.
T Consensus 440 ~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 440 KIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred eEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 89999999998753 345777999998877763 67888777777775
No 147
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=89.14 E-value=1.7 Score=46.95 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=60.9
Q ss_pred CEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 48 ~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
..|+|.|-|.+++.+.+| -.|+.|.|.... |++++-++... +.-.+.-|+-|.|.|.+..=+ ..|.+-+.++++
T Consensus 24 ~~V~v~GEISn~t~~~sg-H~YFtLKD~~A~--i~c~mf~~~~~~l~f~p~eG~~V~v~G~is~Y~--~rG~YQi~~~~~ 98 (440)
T COG1570 24 GQVWVRGEISNFTRPASG-HLYFTLKDERAQ--IRCVMFKGNNRRLKFRPEEGMQVLVRGKISLYE--PRGDYQIVAESM 98 (440)
T ss_pred CeEEEEEEecCCccCCCc-cEEEEEccCCce--EEEEEEcCcccccCCCccCCCEEEEEEEEEEEc--CCCceEEEEecC
Confidence 569999999999988875 899999999864 99998776532 223478999999999997654 246899999988
Q ss_pred EE
Q 010544 127 VD 128 (507)
Q Consensus 127 ~v 128 (507)
+-
T Consensus 99 ~p 100 (440)
T COG1570 99 EP 100 (440)
T ss_pred Cc
Confidence 74
No 148
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=89.03 E-value=6.8 Score=32.45 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=47.3
Q ss_pred EEEEEEEEee--eecCCc-eeEEEEEEcCCCCceEEEEEeCCcchhcccCC-CCcEEEEEEEEeCCCCCCcceeEEEEeE
Q 010544 50 VRVGGWVKTG--REQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVP-TGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 50 V~V~GwV~~i--R~~g~~-kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~-~gs~V~V~G~v~~~~~g~~~~~El~v~~ 125 (507)
|+|.|-|-.+ |..+.| .+.-+.|.|.+..-.+...+. +.......|. .|++|.|.|.+.-..- .+++.+.+..
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~-~~~~~~~~ik~~G~~v~v~G~v~~D~f--~~e~~~~i~~ 78 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLR-KDEKDKEELKSKGDWVRVRGKVQYDTF--SKELVLMIND 78 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEecc-CChhHHhhcccCCCEEEEEEEEEEccC--CCceEEEeee
Confidence 6889998664 443322 455588999987523333332 2211224578 9999999999976642 2477777766
Q ss_pred EE
Q 010544 126 VV 127 (507)
Q Consensus 126 i~ 127 (507)
+.
T Consensus 79 i~ 80 (82)
T cd04484 79 IE 80 (82)
T ss_pred EE
Confidence 54
No 149
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=88.55 E-value=1.7 Score=47.88 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=47.2
Q ss_pred eeeEeechhhhHH-HHhh------cc-CcEEEEe-eccccCCC--CCCCCccccccccccccCCCHHHHHHHHHHHHHHH
Q 010544 303 QAFLTVSGQLQVE-TYAC------AV-SNVYTFG-PTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 303 ~~yL~~S~Ql~le-~l~~------g~-~rVfeI~-p~FRaE~~--~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i 371 (507)
+.+|....+..+= ++.. .+ -++|+++ +|||.|.. ++-.=+.||.|.|.-. +.+.++..+..++++...
T Consensus 309 ~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~e~mle~~ 387 (520)
T TIGR00415 309 GYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIRDKTLELA 387 (520)
T ss_pred ceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 3557777766553 2221 23 3789955 79999984 3333345999999988 888899988888888543
No 150
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=88.25 E-value=4.5 Score=33.03 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=41.2
Q ss_pred ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEE-EEEeCCCCCCcceeEEEEeEE
Q 010544 65 GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 65 ~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~-G~v~~~~~g~~~~~El~v~~i 126 (507)
+++.=+.|.|.||. |.+++..... ...+..|++|.+. |.+..-. +.++|.+.+.
T Consensus 22 ~~~~~~~l~D~TG~--i~~~~W~~~~--~~~~~~G~vv~i~~~~v~~~~----g~~ql~i~~~ 76 (82)
T cd04491 22 GKVQSGLVGDETGT--IRFTLWDEKA--ADDLEPGDVVRIENAYVREFN----GRLELSVGKN 76 (82)
T ss_pred eEEEEEEEECCCCE--EEEEEECchh--cccCCCCCEEEEEeEEEEecC----CcEEEEeCCc
Confidence 37777889999985 9999887643 3468899999999 7876654 4688877653
No 151
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.21 E-value=2.1 Score=45.05 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-+|.-..+++.+++=|++-|=.+|.-|+|++.
T Consensus 49 Plg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~ 82 (457)
T KOG2324|consen 49 PLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSK 82 (457)
T ss_pred cchHHHHHHHHHHHHHHHHhccCeeEeecccChH
Confidence 3456788899999999999999999999999874
No 152
>PRK07211 replication factor A; Reviewed
Probab=88.09 E-value=3.9 Score=45.02 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=60.8
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeeee------c---CCceeEEEEEEcCCCCceEEEEEeCCcch-hcccCCCC
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE------Q---GKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTG 99 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~------~---g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~g 99 (507)
.+|++|.. -.+.|+|.|||.++-. . +.|++.=+.|-|.||. |++++..+..+ +...|..|
T Consensus 54 ~~I~dL~p--------g~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG~--Ir~TlW~d~ad~~~~~Le~G 123 (485)
T PRK07211 54 NGIADIEP--------GMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETGS--VRVAFWDEQAVAAEEELEVG 123 (485)
T ss_pred ccHhhCCC--------CCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCCe--EEEEEechHhHhhhcccCCC
Confidence 36777752 2367999999977522 2 2358999999999985 99999877542 45578999
Q ss_pred cEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 100 TCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 100 s~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
+++.|.|.++..- +.+||.+..+
T Consensus 124 dV~~I~~~~~~~y----s~~El~i~~v 146 (485)
T PRK07211 124 QVLRIKGRPKDGY----NGLEVSVDKV 146 (485)
T ss_pred CEEEEeceEeccc----cceEEEEeeE
Confidence 9999999875332 3578888854
No 153
>PRK02801 primosomal replication protein N; Provisional
Probab=87.87 E-value=7.2 Score=33.68 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=34.4
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeC--CCCCCcceeEEEEeEEEEe
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKN--PPEGTKQKIELRVQKVVDV 129 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~--~~~g~~~~~El~v~~i~vl 129 (507)
|+||+-.+... ..+.+..|+.|.|+|.+.. ++.| ...+.|++++++.+
T Consensus 50 i~~va~G~~Ae~~~~~l~kGs~v~V~G~L~~~~~~~g-~~~~~v~~~~i~~l 100 (101)
T PRK02801 50 MPVIVSGNQFQAITQSITVGSKITVQGFISCHQGRNG-LSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEcHHHHHHHhhcCCCCEEEEEEEEEEeECCCC-CEEEEEEEEEEEEC
Confidence 78887776543 3446899999999999985 3322 23466999988865
No 154
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=87.65 E-value=5.9 Score=35.41 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=52.0
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEE-------cCCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC--
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN-------DGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE-- 113 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~Lr-------D~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~-- 113 (507)
..|.|.||+.+ +|...+| .++=+.|. +.+.+ +.|++-.+... ..+.|..|+.|.|+|.+....-
T Consensus 4 N~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w--~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d 81 (121)
T PRK07459 4 NSVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDW--FNLEIWGKTAQVAADYVKKGSLIGITGSLKFDRWTD 81 (121)
T ss_pred cEEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceE--EEEEEehHHHHHHHHHcCCCCEEEEEEEEEecceEc
Confidence 35778888865 3432221 23333332 23444 77777665422 3456899999999999986532
Q ss_pred ---C-CcceeEEEEeEEEEeeCC
Q 010544 114 ---G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 114 ---g-~~~~~El~v~~i~vls~a 132 (507)
| .....||.+++|+.|+..
T Consensus 82 ~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 82 RNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred CCCCeEEEEEEEEEeEEEECcCC
Confidence 2 123689999999999853
No 155
>PRK14699 replication factor A; Provisional
Probab=87.55 E-value=4 Score=45.02 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=63.3
Q ss_pred CCCEEEEEEEEEee-------eecC-CceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcc
Q 010544 46 AGRQVRVGGWVKTG-------REQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (507)
Q Consensus 46 ~g~~V~V~GwV~~i-------R~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~ 117 (507)
.+..|.|.|+|.++ |+.| .+++.=+.|.|+||. |.+++..+..++...+..|+.|.|.+.-+.-.. -.+
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG~--Ir~T~W~~~a~~~~~i~~Gd~v~i~~~y~~~~~-~~~ 361 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTGK--IRLTLWDEKTNFLDEIDFDETVEVLNAYSRENT-FSQ 361 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCCe--EEEEEeCcccccccccCCCceEEEEeEEEEecc-CCc
Confidence 46789999999865 2233 347788899999995 999998876555566889999988664433221 245
Q ss_pred eeEEEEeEEEEeeCCC
Q 010544 118 KIELRVQKVVDVGMVD 133 (507)
Q Consensus 118 ~~El~v~~i~vls~a~ 133 (507)
.+||.+.+-.++.+|+
T Consensus 362 ~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 362 QVELNLGARGIIQKSE 377 (484)
T ss_pred cEEEEecCceeEeecC
Confidence 8999999888888875
No 156
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=87.17 E-value=8.4 Score=36.25 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=57.4
Q ss_pred CCCCEEEEEEEEE--eeeecCC-ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 45 LAGRQVRVGGWVK--TGREQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 45 ~~g~~V~V~GwV~--~iR~~g~-~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
..|+.++|.|.|. ++.+.+. ..+.| .|.|+.. .|.|....-.++ ..+-|.-|-|+|.+.... .+
T Consensus 55 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD---lFrEG~gVVveG~~~~~g-------~F 121 (159)
T PRK13150 55 AVGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEG--SVTVSYEGILPD---LFREGQGVVVQGTLEKGN-------HV 121 (159)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCc--EEEEEEeccCCc---cccCCCeEEEEEEECCCC-------EE
Confidence 4689999999998 7766542 13666 6789875 599888776543 457799999999996432 25
Q ss_pred EEeEEEEeeCCCCCCCCCC
Q 010544 122 RVQKVVDVGMVDPAKYPIP 140 (507)
Q Consensus 122 ~v~~i~vls~a~~~~~Pl~ 140 (507)
+++ +||.+|+ +.|..+
T Consensus 122 ~A~--evLAKhd-ekYmPp 137 (159)
T PRK13150 122 LAH--EVLAKHD-ENYTPP 137 (159)
T ss_pred EEe--EEEeCCC-CCCCCH
Confidence 554 7899998 566533
No 157
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=87.05 E-value=21 Score=37.15 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=94.7
Q ss_pred EeechhhhHHHHhh--cc---CcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccc
Q 010544 306 LTVSGQLQVETYAC--AV---SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCF 380 (507)
Q Consensus 306 L~~S~Ql~le~l~~--g~---~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~ 380 (507)
.++|=--++.+++. +| +.+|+=-.+.|..+.-+..|.-=--|-|||.....-+.-++.+.+.++.|+..+...-
T Consensus 72 iVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ld~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~Iy~~ik~te- 150 (327)
T PRK05425 72 VVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDLDNTHSVYVDQWDWEKVIGKEERNLDYLKETVEKIYKAIKATE- 150 (327)
T ss_pred EEeehHHHHHHHHHhcCCCCCceeccCCccccCCcccCcccceEeccccHHHhCCccccCHHHHHHHHHHHHHHHHHHH-
Confidence 44554333443333 45 5799888888874434899987778999999986555667777777777777655421
Q ss_pred cchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccc-hHHHHHHHHHHcCCCeEEEe
Q 010544 381 DDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLA-SEHERYLTEVKFQKPVIVYN 459 (507)
Q Consensus 381 ~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~-~e~Er~L~e~~~~~P~fVtd 459 (507)
.++...++.. . .+. ..|+|-.+-+++..- -+++ .+.|..++..+ +.|||+.
T Consensus 151 ---~~~~~~y~~~--~----~Lp---~~i~FitsqeL~~~Y--------------P~l~~keRE~~i~ke~--gaVFi~~ 202 (327)
T PRK05425 151 ---KAVSKKYPLL--P----FLP---EEITFITSQELEDRY--------------PDLTPKEREDAIAKEY--GAVFLIG 202 (327)
T ss_pred ---HHHHHhCccc--c----cCC---CceEEecHHHHHHHC--------------CCCCHHHHHHHHHHHh--CcEEEEe
Confidence 1122222210 1 111 245555444444211 1344 34577788764 6788876
Q ss_pred cCCCCccceeee----cCCcCeEEEEEEEc-----CCceEEeccccccccccccc
Q 010544 460 YPKGIKAFYMRL----NDDLKTVAAMDVLV-----PKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 460 yP~~~~Pfy~~~----~~d~~~~~rFDLl~-----pgg~EI~~GsqRe~~~~~l~ 505 (507)
-=..++.= +++ ++-..+..+-|+++ ....||.+|+.|++ ++.|+
T Consensus 203 IG~~L~~g-~~Hd~RapDYDDW~LNGDilvw~~~l~~a~ELSSmGiRVd-~e~L~ 255 (327)
T PRK05425 203 IGGKLSDG-KPHDGRAPDYDDWGLNGDILVWNPVLDDAFELSSMGIRVD-EEALK 255 (327)
T ss_pred ccCcCCCC-CcCCCCCCCCcCcccCceEEEEccccCceeeecCcceEec-HHHHH
Confidence 54333211 111 11112334445443 34789999999999 77664
No 158
>PRK07217 replication factor A; Reviewed
Probab=87.01 E-value=7 Score=40.55 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=73.7
Q ss_pred cccccccccccceehhhhhcCCCCCCCCCCCEEEEEEEEEee--eecCCceeEE-EEEEcCCCCceEEEEEeCCcchhcc
Q 010544 18 DDAVQRHQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG--REQGKGSFAF-LEVNDGSCPANLQVIVDKDVADLGQ 94 (507)
Q Consensus 18 ~~~~~~~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i--R~~g~~kl~F-i~LrD~sg~~~IQvVv~~~~~~~~~ 94 (507)
.+.+++..-..-++|+||. ..++.|+|.|+|..+ +.++ .+.. -.|-|.||. |-.++..+.. ..
T Consensus 61 ~~~~~~~~~~~~~kI~Di~--------~~~~~VsV~aKVl~l~e~~~~--si~qvGllgDETG~--IkfT~W~~s~--~~ 126 (311)
T PRK07217 61 RDELSGGGGSELVNIADID--------EPEQWVDVTAKVVQLWEPSSD--SIAQVGLLGDETGT--IKFTKWAKSD--LP 126 (311)
T ss_pred ccccccCCCCCceeeeecC--------CCCCcEEEEEEEEEecCCCCC--ceEEEEEEEcCCce--EEEEEccCCC--CC
Confidence 3333333333456788885 357889999999887 4555 6777 678899986 9888887531 23
Q ss_pred cCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCC
Q 010544 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIP 140 (507)
Q Consensus 95 ~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~ 140 (507)
.|..|++|.+.+..+..-. |.++|.+.+...+.+.+ ...++.
T Consensus 127 ~leeGd~~rI~na~v~ey~---G~~~lnlg~~t~I~~~d-e~IeV~ 168 (311)
T PRK07217 127 ELEEGKSYLLKNVVTDEYQ---GRFSVKLNRTTSIEELD-EDIEVG 168 (311)
T ss_pred cccCCCEEEEEeEEEeeEC---CEEEEEeCCceEEEeCC-CCcccc
Confidence 4789999999998876653 47899998887777754 344443
No 159
>PRK12366 replication factor A; Reviewed
Probab=86.88 E-value=3.8 Score=46.69 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=61.9
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEee---e----ecC-CceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCC
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R----~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~g 99 (507)
.-++|++|.. -...|+|.|+|.++ | ..| .|++.=+.|.|.+|. |.+++..+..++...|..|
T Consensus 62 ~~~~I~dl~p--------~~~~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~--Ir~t~W~~~~~~~~~le~G 131 (637)
T PRK12366 62 EDFKISDIEE--------GQINVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGT--IRLTLWNDNAKLLKGLKEG 131 (637)
T ss_pred ceeEHHHCcC--------CCcceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCE--EEEEEEchhhhhhccCCCC
Confidence 3467888862 23469999999765 3 223 347888999999985 9999988765544578999
Q ss_pred cEEEEEEEEeCCCCCCcceeEEEEeE
Q 010544 100 TCVYVEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 100 s~V~V~G~v~~~~~g~~~~~El~v~~ 125 (507)
+++.|.|-....- .+.+||....
T Consensus 132 ~v~~i~~~~v~~~---~~~~el~~~~ 154 (637)
T PRK12366 132 DVIKIENARSRKW---NNDVELNSGS 154 (637)
T ss_pred CEEEEeccEeccc---CCceEEEcCC
Confidence 9999998765542 2478887653
No 160
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=86.85 E-value=10 Score=35.76 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=57.1
Q ss_pred CCCCEEEEEEEEE--eeeecCCc-eeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 45 LAGRQVRVGGWVK--TGREQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 45 ~~g~~V~V~GwV~--~iR~~g~~-kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
..|+.++|.|.|. ++.+.+.+ .+.| .|.|+.. .|.|....-.++ ..+-|.-|-|+|.+.... .+
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~--~v~V~Y~GilPD---lFrEG~gVVveG~~~~~g-------~F 121 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGG--SVTVTYEGILPD---LFREGQGIVAQGVLEEGN-------HI 121 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCe--EEEEEEcccCCc---cccCCCeEEEEEEECCCC-------eE
Confidence 4699999999998 77666532 3566 6689864 588888765443 456799999999996421 25
Q ss_pred EEeEEEEeeCCCCCCCCCC
Q 010544 122 RVQKVVDVGMVDPAKYPIP 140 (507)
Q Consensus 122 ~v~~i~vls~a~~~~~Pl~ 140 (507)
+++ +||.+|+ +.|.-+
T Consensus 122 ~A~--~vLAKhd-ekYmPp 137 (160)
T PRK13165 122 EAK--EVLAKHD-ENYTPP 137 (160)
T ss_pred EEE--EEEecCC-CCCCCH
Confidence 555 7899997 566533
No 161
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=86.72 E-value=9.8 Score=35.37 Aligned_cols=88 Identities=26% Similarity=0.395 Sum_probs=59.9
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEE--eeee-cCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVK--TGRE-QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~--~iR~-~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G 106 (507)
.+..++.. +....|+.|+|.|+|. ++.. .+ +.+.| .|.|+.. .|.|+.+...++ ..+-|..|-|+|
T Consensus 38 ~tpse~~~----~~~~~g~~vrvgG~V~~gSi~~~~~-~~~~F-~ltD~~~--~i~V~Y~G~lPd---~F~eg~~VVv~G 106 (148)
T PRK13254 38 YTPSEVAE----GEAPAGRRFRLGGLVEKGSVQRGDG-LTVRF-VVTDGNA--TVPVVYTGILPD---LFREGQGVVAEG 106 (148)
T ss_pred eCHHHHhc----CCccCCCeEEEeEEEecCcEEeCCC-CEEEE-EEEeCCe--EEEEEECCCCCc---cccCCCEEEEEE
Confidence 34566653 2235799999999995 4543 33 26787 4588853 588888876543 456799999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEeeCCCCCCCC
Q 010544 107 MLKNPPEGTKQKIELRVQKVVDVGMVDPAKYP 138 (507)
Q Consensus 107 ~v~~~~~g~~~~~El~v~~i~vls~a~~~~~P 138 (507)
.+... + ..+++ +||.+|+ +.|.
T Consensus 107 ~~~~~-----g--~F~A~--~vLaKc~-skY~ 128 (148)
T PRK13254 107 RLQDG-----G--VFVAD--EVLAKHD-ENYM 128 (148)
T ss_pred EECCC-----C--eEEEE--EEEecCC-CCCC
Confidence 98532 1 35565 7888997 5664
No 162
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=85.97 E-value=4.8 Score=43.59 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=61.3
Q ss_pred CCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeE
Q 010544 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 47 g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~ 125 (507)
-..|+|.|=|.+.+.+++ +=+|+.|.|... .|-||+.++... +...+..|+-|.|.|.+..-+ ..|.+.|.+++
T Consensus 23 ~~~v~v~gEis~~~~~~s-GH~Yf~Lkd~~a--~i~~~~~~~~~~~~~~~~~~G~~v~v~g~~~~y~--~~g~~ql~v~~ 97 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSS-GHWYFTLKDEIA--QIRCVMFKGSARRLKFKPEEGMKVLVRGKVSLYE--PRGDYQLIVEE 97 (438)
T ss_pred CCcEEEEEEeCCCeeCCC-CeEEEEEEcCCc--EEEEEEEcChhhcCCCCCCCCCEEEEEEEEEEEC--CCCCEEEEEEE
Confidence 468999999999987754 478899999975 599999876532 233478999999999997543 23579999999
Q ss_pred EEEee
Q 010544 126 VVDVG 130 (507)
Q Consensus 126 i~vls 130 (507)
|...+
T Consensus 98 i~~~g 102 (438)
T PRK00286 98 IEPAG 102 (438)
T ss_pred eeeCC
Confidence 98644
No 163
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=85.31 E-value=3.7 Score=44.77 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=24.6
Q ss_pred cEEEEeeccccCCCCCCCCcccccccc
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVE 349 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE 349 (507)
++...|.|||.+.. +.+|.|-|.|+|
T Consensus 135 ~~i~~G~VYRrD~i-DatH~p~FHQ~E 160 (460)
T TIGR00469 135 GFLISADVYRRDEI-DKTHYPVFHQAD 160 (460)
T ss_pred eeEeecceeeCCCC-ccccCccceeeE
Confidence 48899999999999 999999999999
No 164
>PRK12366 replication factor A; Reviewed
Probab=85.25 E-value=6.8 Score=44.73 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=64.1
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEee---ee----cCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCc
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGT 100 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R~----~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs 100 (507)
....|++|.. -..|+.++|.|||.++ |. -|.|++.=+.|.|.+|. |++++-.+..+....|..|+
T Consensus 278 ~~~pI~~L~~------~~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG~--IR~t~w~~~~d~~~~l~~G~ 349 (637)
T PRK12366 278 EIVNIEELTE------FEDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTGR--VRVSFWGEKAKILENLKEGD 349 (637)
T ss_pred CceeHHHCCc------ccCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCCe--EEEEEeCchhhhhcccCCCC
Confidence 4467777752 1146799999999876 33 34458888999999984 99999887643222357899
Q ss_pred EEEEEEEEeCCCC--CCcceeEEEEeEEEEee
Q 010544 101 CVYVEGMLKNPPE--GTKQKIELRVQKVVDVG 130 (507)
Q Consensus 101 ~V~V~G~v~~~~~--g~~~~~El~v~~i~vls 130 (507)
++.|.|-..+.-. ...+++||.+..-..+.
T Consensus 350 vy~is~~~vk~y~~~~~~~~~El~~~~~s~I~ 381 (637)
T PRK12366 350 AVKIENCKVRTYYDNEGEKRVDLNAGYSSEII 381 (637)
T ss_pred EEEEecCEEeeccccCCCcCEEEEcCCceEEE
Confidence 9999875544110 12357888886544333
No 165
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=84.40 E-value=5.7 Score=43.16 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=59.5
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEE
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~ 127 (507)
.|+|.|=|.+.+.+.+ +=+|+.|.|... .|.||+-++... +.-.+..|+-|.|.|.+..-+ ..|.+.|.+++++
T Consensus 19 ~v~V~GEisn~~~~~s-GH~YFtLkD~~a--~i~~vmf~~~~~~l~f~~~~G~~V~v~g~v~~y~--~~G~~ql~v~~i~ 93 (432)
T TIGR00237 19 QVWIQGEISNFTQPVS-GHWYFTLKDENA--QVRCVMFRGNNNRLKFRPQNGQQVLVRGGISVYE--PRGDYQIICFEMQ 93 (432)
T ss_pred cEEEEEEecCCeeCCC-ceEEEEEEcCCc--EEEEEEEcChhhCCCCCCCCCCEEEEEEEEEEEC--CCCcEEEEEEEec
Confidence 7999999999987665 368889999875 599998876532 223478999999999996544 2357999999997
Q ss_pred Eee
Q 010544 128 DVG 130 (507)
Q Consensus 128 vls 130 (507)
..+
T Consensus 94 ~~G 96 (432)
T TIGR00237 94 PAG 96 (432)
T ss_pred cCC
Confidence 544
No 166
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=83.90 E-value=6.2 Score=37.91 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=37.2
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+-|++-.+... +.+.|+.|+.|.|+|.+..+.- | +...+||.+++|.+|+..
T Consensus 51 i~v~~fg~~AE~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 51 IDIRLFGRTAEIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred EEEEEEhHHHHHHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 56665554322 3456899999999999976531 2 234699999999999864
No 167
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.88 E-value=7.4 Score=44.70 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=53.4
Q ss_pred CCCCEEEEEEEEEeeeec--CCceeEEEEEEcCCCCceEEEEEeC-Ccchh-cccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 45 LAGRQVRVGGWVKTGREQ--GKGSFAFLEVNDGSCPANLQVIVDK-DVADL-GQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~~--g~~kl~Fi~LrD~sg~~~IQvVv~~-~~~~~-~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
..|+.|+|.|.|.+.+.. ++ ++.-+.+.|++|. +++++=. +.. | .+.+..|+.+.|.|++.... +.++
T Consensus 57 ~~g~~vtv~g~V~~~~~~~~~~-~~~~v~l~D~tg~--i~l~~F~~n~~-~~~~~l~~G~~~~v~Gkv~~~~----~~~q 128 (681)
T PRK10917 57 RPGEKVTVEGEVLSAEVVFGKR-RRLTVTVSDGTGN--LTLRFFNFNQP-YLKKQLKVGKRVAVYGKVKRGK----YGLE 128 (681)
T ss_pred CCCCEEEEEEEEEEEEEccCCc-eEEEEEEEECCeE--EEEEEEccCcH-HHHhhCCCCCEEEEEEEEEecC----CeEE
Confidence 468999999999876433 33 6778889999985 8887653 222 4 46789999999999998632 2355
Q ss_pred EEEeEEEE
Q 010544 121 LRVQKVVD 128 (507)
Q Consensus 121 l~v~~i~v 128 (507)
+.--++.+
T Consensus 129 m~~P~~~~ 136 (681)
T PRK10917 129 MVHPEYEV 136 (681)
T ss_pred EEcCEEEe
Confidence 54444433
No 168
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.42 E-value=8 Score=43.90 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=65.2
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEe---eee----cCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKT---GRE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTC 101 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~---iR~----~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~ 101 (507)
+.|++|.. -...++|.|||.+ +|. .|.|++.-++|.|.+| .|++.+-.+.. .|...|..|++
T Consensus 181 ~pI~~L~p--------y~~~wtIkaRV~~Ks~ir~~~~~~gegkvfsv~L~Degg--~Irat~f~~~~dkf~~~l~eG~V 250 (608)
T TIGR00617 181 MPIASLSP--------YQNKWTIKARVTNKSEIRTWSNARGEGKLFNVELLDESG--EIRATAFNEQADKFYDIIQEGKV 250 (608)
T ss_pred EEHHHCCC--------CCCceEEEEEEEeccccceecCCCCCceeeEEEEecCCC--eEEEEECchHHHHHhhhcccCCE
Confidence 46777752 2345999999976 343 2334788899999665 59999888754 36677999999
Q ss_pred EEEE-EEEeCCCCC---CcceeEEEEeEEEEeeCCC
Q 010544 102 VYVE-GMLKNPPEG---TKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 102 V~V~-G~v~~~~~g---~~~~~El~v~~i~vls~a~ 133 (507)
+.|+ |.|+..... ...++||...+-..+.+|.
T Consensus 251 Y~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 251 YYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred EEECceEEEEccccccCCCCCEEEEECCCeEEEECC
Confidence 9994 456554321 2457999988777777664
No 169
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=83.34 E-value=9.4 Score=32.25 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=45.2
Q ss_pred EEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCC
Q 010544 50 VRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 50 V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
=.+.|.|++++..+. =+|+.|+|.||. +++.+.++.. .+...|..|+++-..-.-.-++
T Consensus 5 p~l~v~Iks~~~~~~--D~~v~l~DpTG~--i~~tiH~~v~~~y~~~l~~GavLlLk~V~Vf~p 64 (86)
T PF15072_consen 5 PCLVVIIKSIVPSSE--DAFVVLKDPTGE--IRGTIHRKVLEEYGDELSPGAVLLLKDVTVFSP 64 (86)
T ss_pred CEEEEEEEEeeccCC--CeEEEEECCCCc--EEEEEeHHHHhhcCCccccCEEEEEeeeeEEec
Confidence 368999999999884 589999999996 9999987753 2556688888887765433333
No 170
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=83.20 E-value=8.6 Score=36.48 Aligned_cols=52 Identities=25% Similarity=0.344 Sum_probs=37.9
Q ss_pred EEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+.. .+.+.|..||.|.|+|.+....- | ....+||.+++|.+|+..
T Consensus 54 ~~Vv~fgk~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 54 HRIVFYRRQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEhHHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 6777665542 24566899999999999987632 2 224689999999998864
No 171
>PRK07211 replication factor A; Reviewed
Probab=82.28 E-value=9.7 Score=41.97 Aligned_cols=92 Identities=26% Similarity=0.337 Sum_probs=65.7
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEee---e----ecC-CceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCC
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R----~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~g 99 (507)
...+|++|.. ....|.|.|+|.++ | +.| .+++.=+.|-|.||. |.+++..+.......|..|
T Consensus 160 ~~~~I~dL~~--------~~~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~--IR~TlW~d~Ad~~~~le~G 229 (485)
T PRK07211 160 DTYTVEDLSL--------GLSDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGR--VRVTLWDDRADLAEELDAG 229 (485)
T ss_pred CCccHHHcCC--------CCCceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCe--EEEEEechhhhhhccCCCC
Confidence 3456777741 35679999999854 3 333 346777899999985 9999988765433568999
Q ss_pred cEEEEE-EEEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 100 TCVYVE-GMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 100 s~V~V~-G~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
++|.|. |.++... +++||.+.+-..+.+++
T Consensus 230 ~Vv~I~~a~Vre~~----g~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 230 ESVEIVDGYVRERD----GSLELHVGDRGAVEEVD 260 (485)
T ss_pred CEEEEEeeEEEecC----CcEEEEECCCceEEECC
Confidence 999997 5565543 58999998777777664
No 172
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=82.19 E-value=7.6 Score=36.60 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=38.0
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
|.|++-.+... +.+.|..|+.|.|+|.+..+.- | +....||.+++|.+|.+.
T Consensus 49 i~vv~wgk~Ae~~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 49 INCVIWRQQAENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EEEEEEcHHHHHHHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 77777665432 3466899999999999986531 2 224689999999998764
No 173
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=81.53 E-value=41 Score=33.71 Aligned_cols=74 Identities=12% Similarity=-0.018 Sum_probs=44.1
Q ss_pred eeEeechhhhHHHHhh--cc---CcEEEEeeccc-cCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhc
Q 010544 304 AFLTVSGQLQVETYAC--AV---SNVYTFGPTFR-AEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLD 377 (507)
Q Consensus 304 ~yL~~S~Ql~le~l~~--g~---~rVfeI~p~FR-aE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~ 377 (507)
+-..+|=--++.+++. +| +.+|+=..+.| .|+.-+..|.-=.-|-|||+....-+.-++.+.+.++.|.+.+..
T Consensus 65 ~EIVhSLAKWKR~aL~~y~f~~geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 65 AEIVHSLAKWKRMALKRYGFPPGEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISKEDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp EEE-S--TTHHHHHHHHTT--TT-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--TT--SHHHHHHHHHHHHHHHHH
T ss_pred eeeehhHHHHHHHHHHHcCCCCCceEeecCceeecchhccCcceEEEecccCHhhhcCcccccHHHHHHHHHHHHHHHHH
Confidence 3355564444444433 45 69999999999 887559999988999999999876666777778888877777654
No 174
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=80.99 E-value=16 Score=36.24 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=58.0
Q ss_pred CCCEEEEEEEEEe---eeecCCc-eeEEEEEEc-----CCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCC---
Q 010544 46 AGRQVRVGGWVKT---GREQGKG-SFAFLEVND-----GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--- 113 (507)
Q Consensus 46 ~g~~V~V~GwV~~---iR~~g~~-kl~Fi~LrD-----~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~--- 113 (507)
.-..|.+.|++.. +|...+| .++-+.|.- .+.+ |.|++..+...+...|..||-|.|.|.+....-
T Consensus 108 ~~N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~--i~~v~wg~~Ae~~~~l~KG~~V~V~GrL~sr~y~~k 185 (219)
T PRK05813 108 NPNEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDY--IPCIAWGRNARFCKTLEVGDNIRVWGRVQSREYQKK 185 (219)
T ss_pred CccEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceE--EEEEEEhHHhHHHhhCCCCCEEEEEEEEEecceEcC
Confidence 3457999999975 4654322 455555542 1344 888887765444456999999999999977521
Q ss_pred -C-----CcceeEEEEeEEEEeeCC
Q 010544 114 -G-----TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 114 -g-----~~~~~El~v~~i~vls~a 132 (507)
| +...+||.+++++.|++.
T Consensus 186 ~g~~~g~kr~~~eV~v~~i~~l~~~ 210 (219)
T PRK05813 186 LSEGEVVTKVAYEVSISKMEKVEKE 210 (219)
T ss_pred CCCccceEEEEEEEEEEEEEEcCCh
Confidence 1 123699999999999874
No 175
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=80.58 E-value=12 Score=35.60 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=37.3
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+-|++-.+... +.+.|+.|+.|.|+|.+..+.- | +...+||.++.|++|...
T Consensus 49 i~~v~wgk~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 49 INCVIWRKQAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEeCcHHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 66666655432 4566899999999999987642 2 223689999999988753
No 176
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=80.57 E-value=24 Score=33.11 Aligned_cols=88 Identities=23% Similarity=0.289 Sum_probs=60.8
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEE--eeeecCCc-eeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVK--TGREQGKG-SFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~--~iR~~g~~-kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G 106 (507)
.+..++.. +....++.++|.|.|. |+.+.+.+ .+.| .+.|+.. .+.|....-.++ ..+-|.-|-++|
T Consensus 38 ~tpsEv~~----~~~~~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~--~v~V~Y~GilPD---lFrEGqgVVaeG 107 (155)
T PRK13159 38 FTPSQVRA----GAAAGYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNA--ATQVEYTGILPD---LFRDNQSVIANG 107 (155)
T ss_pred ECHHHHhc----CCcccCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCc--EEEEEEccCCCc---cccCCCeEEEEE
Confidence 45566763 2334679999999998 78666532 3576 5679865 588887765443 457799999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEeeCCCCCCCC
Q 010544 107 MLKNPPEGTKQKIELRVQKVVDVGMVDPAKYP 138 (507)
Q Consensus 107 ~v~~~~~g~~~~~El~v~~i~vls~a~~~~~P 138 (507)
.+. . | ..+++ +||.+|+ +.|.
T Consensus 108 ~~~--~-g-----~F~A~--~vLAKHd-e~Ym 128 (155)
T PRK13159 108 RMQ--G-G-----RFVAN--EVLAKHD-ETYM 128 (155)
T ss_pred EEc--C-C-----EEEEe--EEEecCC-CcCC
Confidence 986 2 1 35555 7899998 5664
No 177
>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]
Probab=79.74 E-value=13 Score=37.81 Aligned_cols=74 Identities=27% Similarity=0.201 Sum_probs=54.0
Q ss_pred EEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch---hcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeE
Q 010544 49 QVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---LGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 49 ~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~---~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~ 125 (507)
.|.+.|||+++-... .-++++|-|++|. |=+........ ....|..|-.|.|.|.++.-. |...|.+.+
T Consensus 70 ~v~~VGivr~~e~~~--t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~l~~~~yVkv~G~Lk~f~----Gk~sl~~fk 141 (265)
T KOG3108|consen 70 AVSIVGIVRNIEKSA--TNITYEIEDGTGQ--IDVRQWFHDNAESEEMPALETGTYVKVYGHLKPFQ----GKKSLQVFK 141 (265)
T ss_pred EEEEEEEEEeceecC--cceEEEEecCccc--EEEEEeccccchhhhCcccccCcEEEeeecccCCC----CceeEEEEe
Confidence 588999999998888 5577899999986 66665544321 233688999999999998754 356666666
Q ss_pred EEEee
Q 010544 126 VVDVG 130 (507)
Q Consensus 126 i~vls 130 (507)
|.-+-
T Consensus 142 I~pv~ 146 (265)
T KOG3108|consen 142 IRPVE 146 (265)
T ss_pred eeeee
Confidence 65433
No 178
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=79.13 E-value=14 Score=34.88 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=36.8
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... ..+.|..||.|.|+|.+....- | +...+||.+++|.+|+-.
T Consensus 45 i~v~awg~~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 45 CRCNIWGNRYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 66666554322 3456899999999999986531 2 224689999999998654
No 179
>PRK07218 replication factor A; Provisional
Probab=78.45 E-value=17 Score=39.55 Aligned_cols=84 Identities=21% Similarity=0.123 Sum_probs=59.7
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeee-----ecC-CceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR-----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCV 102 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR-----~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V 102 (507)
-.+|+||.. .++.|.|.|+|-++- ..| .+.+.=+.|-|.||. |.+++..+. .|..||+|
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~--Ir~tlW~~~-----~l~~Gdvv 122 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGT--ISYTAWKDF-----GLSPGDTV 122 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCe--EEEEEECCC-----CCCCCCEE
Confidence 467888862 357899999998872 222 346777888999985 898888853 38999999
Q ss_pred EEEEEEeCCCCCCcceeEEEEeEEEEee
Q 010544 103 YVEGMLKNPPEGTKQKIELRVQKVVDVG 130 (507)
Q Consensus 103 ~V~G~v~~~~~g~~~~~El~v~~i~vls 130 (507)
.|.+-....-. +.+||.+.+-.-+.
T Consensus 123 ~I~na~vre~~---g~~el~ig~~t~I~ 147 (423)
T PRK07218 123 TIGNAGVREWD---GRPELNIGESTTVS 147 (423)
T ss_pred EEeccEeeccC---CceEEeccCcceEE
Confidence 99976655432 46888876544444
No 180
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=77.18 E-value=18 Score=31.64 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+.. .+.+.|..||.|.|+|.+..+.- | .....||.++++.+|++.
T Consensus 49 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 49 INCVVWRKSAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEehHHHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 5555554432 24456899999999999987632 2 123689999999999864
No 181
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=76.94 E-value=16 Score=35.09 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=37.5
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... +.+.|++||.|.|+|.+..+.- + +...+||.+++|++|+..
T Consensus 54 ~~V~~fGk~AE~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 54 HRVAFFGRLAEIVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 66666554322 3456899999999999987532 2 235799999999999854
No 182
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=76.83 E-value=20 Score=33.83 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=36.6
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... ..+.|..||.|.|+|.+....- | +...+||.+++|.+|+..
T Consensus 54 ~~Vv~fgk~Ae~v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 54 HRVKFFGKLGEIAGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred EEEEEehHHHHHHHHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 55665544322 3456899999999999977532 2 124689999999999864
No 183
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=76.54 E-value=6.4 Score=42.20 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
-.+.+..|...+++.|...||-.|+||+|...+
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d 48 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPAD 48 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhh
Confidence 346677888899999999999999999999875
No 184
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=76.44 E-value=22 Score=32.93 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=36.3
Q ss_pred EEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEEeeC
Q 010544 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVDVGM 131 (507)
Q Consensus 81 IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~vls~ 131 (507)
+.|++-.+.. ...+.|..|+.|.|+|.+....- | ....+||.+++|.++..
T Consensus 56 ~~V~~wg~~Ae~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~ 112 (148)
T PRK08182 56 APVELWHRDAEHWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPY 112 (148)
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCC
Confidence 6677665432 24456899999999999976531 2 22468999999998764
No 185
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.92 E-value=2.2 Score=45.93 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
....+--+|++...+|+.++||+-+.||.|...
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rk 215 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRK 215 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhH
Confidence 345677788888889999999999999999875
No 186
>PRK08402 replication factor A; Reviewed
Probab=75.46 E-value=22 Score=37.71 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=59.1
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEee---e----ecC-CceeEEEEEEcCCCCceEEEEEeCCcch-hcccCCCC
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---R----EQG-KGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTG 99 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R----~~g-~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~g 99 (507)
-.+|++|.. ..+.|.+.|+|.++ | +.| .+++.=+.|.|.||. +.+++..+... +...+..|
T Consensus 62 ~~kI~dl~~--------g~~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~--ir~TlW~~~a~~~~~~l~~G 131 (355)
T PRK08402 62 LMHISDLVP--------GMRGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGR--ARVVLWDAKVAKYYNKINVG 131 (355)
T ss_pred ccCHHHccC--------CCceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCe--EEEEEechhhhhhcccCCCC
Confidence 367888862 23689999999886 3 233 224555899999986 89998876532 23458999
Q ss_pred cEEEEEE-EEeCCCCCCcceeEEEEeEEEEe
Q 010544 100 TCVYVEG-MLKNPPEGTKQKIELRVQKVVDV 129 (507)
Q Consensus 100 s~V~V~G-~v~~~~~g~~~~~El~v~~i~vl 129 (507)
|+|.|.| .++..- .|..||.+.+-..+
T Consensus 132 dvi~I~~a~V~e~~---~G~~eLsvg~~s~i 159 (355)
T PRK08402 132 DVIKVIDAQVRESL---SGLPELHINFRARI 159 (355)
T ss_pred CEEEEECCEEeecC---CCcEEEEECCCceE
Confidence 9999974 555432 23568888654433
No 187
>PRK06386 replication factor A; Reviewed
Probab=75.17 E-value=25 Score=37.35 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=60.2
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEee------eecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG------REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTC 101 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i------R~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~ 101 (507)
...+|+||.. ...-|.|.|+|..+ ++.+++.+.=+.|-|.||. |.+++..+ .|..|++
T Consensus 106 ~~~KI~DL~~--------g~~~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGr--Ir~TlW~~------~l~eGd~ 169 (358)
T PRK06386 106 KLVKIRDLSL--------VTPYVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTAR--VRISSFGK------PLEDNRF 169 (358)
T ss_pred CccEeEeccC--------CCCceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCe--EEEEEccc------cccCCCE
Confidence 3467888852 24557788888654 2223335666777888875 77776654 4789999
Q ss_pred EEEEEEEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 102 V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
|.|.+..+..- .|.+||.+.+...+.+.+
T Consensus 170 v~i~na~v~e~---~G~~el~v~~~t~I~~~~ 198 (358)
T PRK06386 170 VRIENARVSQY---NGYIEISVGNKSVIKEVE 198 (358)
T ss_pred EEEeeeEEEcc---CCeEEEEeCCeEEEEECC
Confidence 99999776543 358999999888777754
No 188
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=74.24 E-value=2.8 Score=46.25 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=25.7
Q ss_pred cEEEEeeccccCCCCCCC---CccccccccccccCCCHH
Q 010544 323 NVYTFGPTFRAEHSHTSR---HLAEFWMVEPEMAFSDLK 358 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~r---Hl~EFtmLE~E~af~d~~ 358 (507)
.+-|||++||||-+ .+. -+-||+|+|+|. |.+-+
T Consensus 167 giaQIGk~FRNEIs-Pr~~l~R~REF~q~EiE~-Fv~P~ 203 (539)
T PRK14894 167 GIAQVGKAFRNEIN-PRNFLFRVREFEQMEIEY-FVMPG 203 (539)
T ss_pred eEEeeeccccCccC-CCCceeecccchhheEEE-EeCCC
Confidence 68999999999954 322 356999999988 55543
No 189
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=73.55 E-value=28 Score=33.28 Aligned_cols=86 Identities=24% Similarity=0.301 Sum_probs=50.8
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEE-cC------CCC-----ceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeC
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN-DG------SCP-----ANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~Lr-D~------sg~-----~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~ 110 (507)
..|.|.|||.+ +|...+| .++-+.|- +. +|. .-+-|++-.+.. ...+.|..||.|.|+|.+..
T Consensus 7 N~V~LiGrLg~DPElR~t~nG~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~Ae~v~~~L~KG~~V~VeGrL~~ 86 (175)
T PRK13732 7 NKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRT 86 (175)
T ss_pred eEEEEEEEecCCCEEEEcCCCCEEEEEEEEEcCccccCCCCceecceeEEEEEEecHHHHHHHHhcCCCCEEEEEEEEEe
Confidence 46889999876 4544321 33333332 11 110 014555554432 23456899999999999876
Q ss_pred CCC---C-CcceeEEEEe---EEEEeeCCC
Q 010544 111 PPE---G-TKQKIELRVQ---KVVDVGMVD 133 (507)
Q Consensus 111 ~~~---g-~~~~~El~v~---~i~vls~a~ 133 (507)
+.- | .....||.++ ++.+|++..
T Consensus 87 r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~ 116 (175)
T PRK13732 87 RSWEDNGITRYVTEILVKTTGTMQMLGRAP 116 (175)
T ss_pred eeEccCCeEEEEEEEEEeecCeEEEecCCC
Confidence 521 2 2246888888 888888753
No 190
>PRK07218 replication factor A; Provisional
Probab=73.21 E-value=48 Score=36.07 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=54.3
Q ss_pred CCEEEEEEEEEee--e----ecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 47 GRQVRVGGWVKTG--R----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 47 g~~V~V~GwV~~i--R----~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
+..|.|.|+|.++ | +-|...+.=..|.|.||. |.+++.... ..|..|++|.|.|-....-. |.+|
T Consensus 172 ~~~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~--Ir~tlW~~~----~~l~~Gd~v~I~na~v~e~~---G~~e 242 (423)
T PRK07218 172 DRGVNVEARVLELEHREIDGRDGETTILSGVLADETGR--LPFTDWDPL----PEIEIGASIRIEDAYVREFR---GVPS 242 (423)
T ss_pred CCceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCce--EEEEEeccc----ccCCCCCEEEEeeeEEeccC---CeEE
Confidence 4558899998866 2 223334555678899985 998888763 24789999999997766543 5899
Q ss_pred EEEeEEEEeeCC
Q 010544 121 LRVQKVVDVGMV 132 (507)
Q Consensus 121 l~v~~i~vls~a 132 (507)
|.+.+-.-+...
T Consensus 243 lnv~~~t~I~~~ 254 (423)
T PRK07218 243 VNVSEFTTVEAL 254 (423)
T ss_pred EEECCceEEEEC
Confidence 999865555543
No 191
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=72.36 E-value=10 Score=45.24 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=49.0
Q ss_pred CCCEEEEEEEEEeeeec---CCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCC
Q 010544 46 AGRQVRVGGWVKTGREQ---GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~---g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
.++.|+|.|.|.++|.. |+ .++|+.|.|.+|. +.+++-++...-.+.+..++++.|+|+...+.
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~-~maf~~~eD~~~~--~e~~~F~~~~~~~~~l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANK-EYKKVILSDDSVE--ITIFVNDNDYLLFETLKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCC-eEEEEEEEECCCc--EEEEEcHHHHHHHHHhhcCCEEEEEEEEcCCC
Confidence 46789999999886543 44 6999999999986 99998776532112367789999999987764
No 192
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=71.59 E-value=44 Score=30.11 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=35.2
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC---C-CcceeEEEEeEEEEeeC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVVDVGM 131 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~---g-~~~~~El~v~~i~vls~ 131 (507)
+-|++-..... +.+.|..||.|.|+|.+....- | ....+||.++++.+|..
T Consensus 49 ~~v~~fg~~Ae~v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 49 INVVLWGKLAETLASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred EEEEEehHHHHHHHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 45555443322 3456899999999999977643 2 12468999999998874
No 193
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=71.30 E-value=8.5 Score=32.36 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=29.9
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEEEEe
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDV 129 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i~vl 129 (507)
++|++-.+... +.+.+..||.|.|+|.+.... .| +...++|.+++|.+|
T Consensus 50 ~~v~~~g~~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 50 INVVAWGKLAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEHHHHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEeeeecccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 55555544322 345589999999999987642 12 235689999998875
No 194
>PRK07080 hypothetical protein; Validated
Probab=70.82 E-value=4.1 Score=42.31 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=38.5
Q ss_pred CcEEEE-eeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHH
Q 010544 322 SNVYTF-GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMC 372 (507)
Q Consensus 322 ~rVfeI-~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~ 372 (507)
+++|.+ |.|||.|.+++.+-+-||.|-|+=.- .+-+++.+.-+..+....
T Consensus 152 g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~i-Gt~e~v~~~r~~w~e~~~ 202 (317)
T PRK07080 152 GRLVDVASYCFRHEPSLDPARMQLFRMREYVRI-GTPEQIVAFRQSWIERGT 202 (317)
T ss_pred CcEEEeeeeeeccCCCCCcHHHhheeeeEEEEe-cCHHHHHHHHHHHHHHHH
Confidence 477766 67999999998888889999998554 467777777666665544
No 195
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=70.55 E-value=45 Score=33.01 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCEEEEEEEEEe---eeecCCceeEEEEE-------EcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEe-C-CC-
Q 010544 46 AGRQVRVGGWVKT---GREQGKGSFAFLEV-------NDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLK-N-PP- 112 (507)
Q Consensus 46 ~g~~V~V~GwV~~---iR~~g~~kl~Fi~L-------rD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~-~-~~- 112 (507)
.+..|.+.|+|.+ .|.... +-.|... .+.+.+ |.|++......... +..|+.|.|+|.+. - ..
T Consensus 7 ~~NkV~L~Grl~~d~e~~~~~~-G~~~~~f~laV~R~s~~~D~--i~v~v~~rlae~~~-l~kG~~v~VeGqlrsy~~~~ 82 (219)
T PRK05813 7 ENNKVYLEGKVVSELEFSHEMY-GEGFYNFKLEVPRLSDSKDI--LPVTVSERLLAGMD-LKVGTLVIVEGQLRSYNKFI 82 (219)
T ss_pred hcCEEEEEEEEcCCceEEEEeC-CeEEEEEEEEeeccCCCccE--EEEEEEhhhhhhhc-ccCCCEEEEEEEEEEeccCC
Confidence 4678999999975 455332 2444432 255554 88888877644333 88999999999998 1 11
Q ss_pred CC-CcceeEEEEeEEEEeeCC
Q 010544 113 EG-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 113 ~g-~~~~~El~v~~i~vls~a 132 (507)
.| +.--+||.+.+++.+++.
T Consensus 83 ~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 83 DGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred CCcEEEEEEEEEEEEEEccCC
Confidence 12 234689999999998874
No 196
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=70.48 E-value=12 Score=30.32 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=34.2
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~ 105 (507)
.|.|+|+++.++| +|+++-- .+ +...+..+...+...++.|+.|.+.
T Consensus 7 ~v~g~V~si~d~G----~~v~~g~-~g---v~Gfl~~~~~~~~~~~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG----YILDIGI-PG---TTGFLPKKDAGNFSKLKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE----EEEEeCC-CC---cEEEEEHHHCCcccccCCCCEEEEE
Confidence 5999999999999 8999831 12 6677776543333567889988775
No 197
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=69.47 E-value=28 Score=39.57 Aligned_cols=65 Identities=23% Similarity=0.189 Sum_probs=46.2
Q ss_pred CCCCEEEEEEEEEeeee--cCCceeEEEEEEc-CCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCC
Q 010544 45 LAGRQVRVGGWVKTGRE--QGKGSFAFLEVND-GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~--~g~~kl~Fi~LrD-~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
..|+.++|.|.|.+... .++.++.-+.+.| ++|. +.+++=. ..-..+.+..|+.+.|.|++....
T Consensus 30 ~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~F~-~~~~~~~~~~g~~~~~~Gk~~~~~ 97 (630)
T TIGR00643 30 LPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKK--LELRFFN-RAFLKKKFKVGSKVVVYGKVKSSK 97 (630)
T ss_pred CCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCE--EEEEEEC-CHHHHhhCCCCCEEEEEEEEEeeC
Confidence 36899999999875422 2222566778899 8875 8887654 222246689999999999998653
No 198
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=67.59 E-value=38 Score=38.75 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=54.7
Q ss_pred CCCCCEEEEEEEEEee--e-ecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 44 GLAGRQVRVGGWVKTG--R-EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~i--R-~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
...|+.|++.|.|.+. + ..++ ++.=+.+.|+++. |-+++=.......+.++.|..|.|.|+++... +..+
T Consensus 57 ~~~g~~vti~g~V~~~~~~~~~~~-~~l~v~~~d~~~~--l~l~fFn~~~~l~~~~~~G~~v~v~Gk~~~~~----~~~~ 129 (677)
T COG1200 57 ARPGEIVTIEGTVLSHEKFPFGKR-KLLKVTLSDGTGV--LTLVFFNFPAYLKKKLKVGERVIVYGKVKRFK----GGLQ 129 (677)
T ss_pred cCCCceEEEEEEEEeeeccCCCCC-ceEEEEEecCcEE--EEEEEECccHHHHhhCCCCCEEEEEEEEeecc----CceE
Confidence 3478999999999765 3 2244 5556778898764 77665333222346789999999999998854 3566
Q ss_pred EEEeEEEEee
Q 010544 121 LRVQKVVDVG 130 (507)
Q Consensus 121 l~v~~i~vls 130 (507)
+.--++.+.+
T Consensus 130 ~~hpe~~~~~ 139 (677)
T COG1200 130 ITHPEYIVND 139 (677)
T ss_pred EEcceEEecC
Confidence 6555555544
No 199
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.68 E-value=40 Score=31.62 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=36.6
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... +.+.|..|+.|.|+|.+.... .| +...+||.+++|..|...
T Consensus 53 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 53 HDIVIFGRLAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred EEEEEehHHHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 66666554322 445789999999999998753 12 234689999999887754
No 200
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=66.07 E-value=50 Score=41.35 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=54.0
Q ss_pred CCCEEEEEEEEEee--eecCCce-eEEEEEEcCCCCceEEEEEeCCc-chhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTG--REQGKGS-FAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~i--R~~g~~k-l~Fi~LrD~sg~~~IQvVv~~~~-~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
.+..|+|.|.|-.+ |..++|+ +.=+.|.|.++.-.+...+..+. ......|+.|++|.|.|.+....- .+++.+
T Consensus 235 ~~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~~~~~~~~~~~~g~~v~~~g~~~~d~~--~~~~~~ 312 (1437)
T PRK00448 235 EERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDKEDLKKFDEIKKGDWVKVRGSVQNDTF--TRDLVM 312 (1437)
T ss_pred cCCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCcchhHHHhcCCCCCEEEEEEEEeccCC--CCceEE
Confidence 45689999999765 4444333 44467899987534444443321 123356899999999999987652 346777
Q ss_pred EEeEEEEee
Q 010544 122 RVQKVVDVG 130 (507)
Q Consensus 122 ~v~~i~vls 130 (507)
.+..+..+.
T Consensus 313 ~~~~~~~~~ 321 (1437)
T PRK00448 313 NAQDINEIK 321 (1437)
T ss_pred EeeeeeecC
Confidence 777666543
No 201
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=65.39 E-value=2.8 Score=46.26 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHh--CCcEEEccCeeecC
Q 010544 166 ARIRNALAYATHTFLQK--QGFLYIHTPIITTS 196 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~--~~f~ev~TPil~~~ 196 (507)
..+|..|+.+.|++|.- .+++||+||+|.+.
T Consensus 40 ~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~ 72 (558)
T COG0423 40 VELKNNIKEAWRKSFVTEREDVVEIDTPIILPE 72 (558)
T ss_pred HHHHHHHHHHHHHHHeeccCCeEEecccccCcH
Confidence 36789999999999965 68999999999874
No 202
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=65.24 E-value=43 Score=31.12 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=50.0
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEE------c--------CCCCceEEEEEeCC-cch-hcccCCCCcEEEEEEE
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN------D--------GSCPANLQVIVDKD-VAD-LGQLVPTGTCVYVEGM 107 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~Lr------D--------~sg~~~IQvVv~~~-~~~-~~~~L~~gs~V~V~G~ 107 (507)
..|.|.|||.+ +|...+| .++=+.|- | .+.+ +.|++-.+ ... ..+.|..||.|.|+|.
T Consensus 6 N~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w--~~v~~~g~~~Ae~~~~~l~KG~~V~V~Gr 83 (152)
T PRK06642 6 NKVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEW--HRVVIFSEGLVSVVERYVTKGSKLYIEGS 83 (152)
T ss_pred eEEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeE--EEEEEeChHHHHHHHHhCCCCCEEEEEEE
Confidence 46888888876 5654332 23333332 1 1223 66766553 222 3456899999999999
Q ss_pred EeCCCC----C-CcceeEEEEeEE----EEeeCC
Q 010544 108 LKNPPE----G-TKQKIELRVQKV----VDVGMV 132 (507)
Q Consensus 108 v~~~~~----g-~~~~~El~v~~i----~vls~a 132 (507)
+..+.- | .....||.++++ .+|+..
T Consensus 84 L~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~k 117 (152)
T PRK06642 84 LQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDSK 117 (152)
T ss_pred EEeCeeECCCCCEEEEEEEEEEecccceEeccCC
Confidence 986531 2 224588888876 566643
No 203
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=64.91 E-value=13 Score=30.80 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=35.2
Q ss_pred eEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCC-----CcceeEEEEeEEEEe
Q 010544 80 NLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEG-----TKQKIELRVQKVVDV 129 (507)
Q Consensus 80 ~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g-----~~~~~El~v~~i~vl 129 (507)
-++|.+..+... +.+.+..||.|.|+|.+....-. ....+++.+++|.++
T Consensus 45 ~~~v~~~g~~a~~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~~ 100 (100)
T cd04496 45 WIRVVAFGKLAENAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEFL 100 (100)
T ss_pred EEEEEEEhHHHHHHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEEC
Confidence 478877765432 45668999999999999776421 234688888887653
No 204
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=64.54 E-value=46 Score=27.29 Aligned_cols=71 Identities=23% Similarity=0.248 Sum_probs=39.3
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCc---eEE-EEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeE-
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPA---NLQ-VIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQK- 125 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~---~IQ-vVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~- 125 (507)
+|.|.|......+. .-.|. |+|..+.. +-. +.+-... ...+.+||.|.|+|++.+-. | ..+|....
T Consensus 1 ~v~GvVTa~~~~~~-~~Gff-iQd~~~d~~~~ts~gifV~~~~---~~~~~~Gd~V~vtG~v~ey~-g---~tql~~~~~ 71 (78)
T cd04486 1 TVEGVVTAVFSGGG-LGGFY-IQDEDGDGDPATSEGIFVYTGS---GADVAVGDLVRVTGTVTEYY-G---LTQLTAVSA 71 (78)
T ss_pred CeEEEEEEEcCCCC-cCEEE-EEcCCCCCCCcccceEEEecCC---CCCCCCCCEEEEEEEEEeeC-C---eEEEccCCc
Confidence 36788888866431 22455 67652110 001 1111110 23578999999999998865 2 45565543
Q ss_pred EEEee
Q 010544 126 VVDVG 130 (507)
Q Consensus 126 i~vls 130 (507)
+++++
T Consensus 72 ~~~~~ 76 (78)
T cd04486 72 IEVLG 76 (78)
T ss_pred eEEec
Confidence 55544
No 205
>PRK00036 primosomal replication protein N; Reviewed
Probab=63.62 E-value=20 Score=31.61 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=38.6
Q ss_pred eEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCC
Q 010544 80 NLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 80 ~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a 132 (507)
.||+++........+.++.|+.|.|+|.+..+.. ....+=||++.|+.+.+.
T Consensus 48 ~i~ava~G~~a~~~~~l~~Gs~v~v~GFLa~~~~-~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 48 TISAVALGDLALLLADTPLGTEMQVQGFLAPARK-DSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEhhHHHHhcccCCCCEEEEEEEEEECCC-CCCcEEEEhHHeEEcccc
Confidence 3777777754333346899999999999986443 345788999999988554
No 206
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=61.79 E-value=42 Score=36.41 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=52.1
Q ss_pred CCEEEEEEEEEe--eeecCCceeEEEEEEcCCCCceEEEEEeCCcc---hhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 47 GRQVRVGGWVKT--GREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 47 g~~V~V~GwV~~--iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
...++|.|.|.. ++.-| +..|+.+.|+.|. |-++.-.... .....|.+||.|.+.|.++... |
T Consensus 266 ~~~~~v~g~v~~~p~~ieG--ghv~v~i~d~~G~--I~~~A~eptk~fr~~a~~L~pGD~i~~~G~~~~~~--------~ 333 (421)
T COG1571 266 YSKYRVVGRVEAEPRAIEG--GHVVVEITDGEGE--IGAVAFEPTKEFRELARKLIPGDEITVYGSVKPGT--------L 333 (421)
T ss_pred ccceEEEEEEecccEEeeC--CEEEEEecCCCce--EEEEEecccccchHHHHhcCCCCEEEEecCccccc--------e
Confidence 456889998865 35566 7999999999984 7777643332 2346788999999999986532 6
Q ss_pred EEeEEEEeeC
Q 010544 122 RVQKVVDVGM 131 (507)
Q Consensus 122 ~v~~i~vls~ 131 (507)
.+++++++.-
T Consensus 334 n~ek~~v~~l 343 (421)
T COG1571 334 NLEKFQVLKL 343 (421)
T ss_pred eEEEEEEEEe
Confidence 6666666543
No 207
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=58.89 E-value=92 Score=29.69 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=34.7
Q ss_pred EEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCC---C-CcceeEEEEe---EEEEeeC
Q 010544 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQ---KVVDVGM 131 (507)
Q Consensus 81 IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~---g-~~~~~El~v~---~i~vls~ 131 (507)
+.|++-.+.. .+.+.|..|+.|.|+|.+..+.- | ....+||.++ .+.+|+.
T Consensus 55 ~~Vv~fgk~Ae~v~~~l~KGs~V~VeGrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~ 113 (172)
T PRK05733 55 HRVSLFGKVAEIAGEYLRKGSQVYIEGKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGG 113 (172)
T ss_pred EEEEEehHHHHHHHHHhCCCCEEEEEEEEEeCcEecCCEEEEEEEEEEeecCeEEECcC
Confidence 5666555432 24466899999999999877642 2 1235888888 7888874
No 208
>PLN02734 glycyl-tRNA synthetase
Probab=58.06 E-value=4.3 Score=46.45 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHH-HhCCcEEEccCeeecC
Q 010544 166 ARIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl-~~~~f~ev~TPil~~~ 196 (507)
..+++.|+...|++| .+.+.+||+||+|++.
T Consensus 109 ~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~ 140 (684)
T PLN02734 109 CAVKSNVLAFWRQHFVLEENMLEVECPCVTPE 140 (684)
T ss_pred HHHHHHHHHHHHHHHhccCCeeEeeccccCCH
Confidence 478999999999988 4567789999999976
No 209
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=57.33 E-value=3.6 Score=45.99 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHH-HhCCcEEEccCeeecC
Q 010544 165 VARIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl-~~~~f~ev~TPil~~~ 196 (507)
-.+++..|....|++| .+.|++||+||+|++.
T Consensus 36 G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 36 GAVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 3578999999999988 4788999999999975
No 210
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=56.70 E-value=2.6e+02 Score=29.39 Aligned_cols=72 Identities=10% Similarity=-0.007 Sum_probs=49.1
Q ss_pred EeechhhhHHHHhh--cc---CcEEEEeecccc-CCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhc
Q 010544 306 LTVSGQLQVETYAC--AV---SNVYTFGPTFRA-EHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLD 377 (507)
Q Consensus 306 L~~S~Ql~le~l~~--g~---~rVfeI~p~FRa-E~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~ 377 (507)
..+|=--+|.+.+. +| +.+|+=-.+-|. |+.-+..|.-=--|-|||.....-+.-++.+.+.++.|++.+..
T Consensus 69 vVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~ 146 (330)
T TIGR00669 69 VVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRA 146 (330)
T ss_pred EehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHH
Confidence 55554444443333 55 579998888876 56248899777789999999876566677777777777766544
No 211
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=55.25 E-value=1.6e+02 Score=26.58 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=58.8
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee----eecCCceeEEEEEEcCCCC--ceEEEEEeCCcchhcccCCCCcEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG----REQGKGSFAFLEVNDGSCP--ANLQVIVDKDVADLGQLVPTGTCVY 103 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i----R~~g~~kl~Fi~LrD~sg~--~~IQvVv~~~~~~~~~~L~~gs~V~ 103 (507)
+.|+++.. ..++.|.|-|=|... |..|+.-.+-+.|.|.++. ..|.|.+=.........+..||+|.
T Consensus 4 ~~i~~~~~-------~~~~~v~vigVV~~~~~p~~s~g~d~~~tl~i~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDVIl 76 (138)
T cd04497 4 TPLSSALK-------ESGGSVNVIGVVVDAGPPVRSKGTDYCCTLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDIIL 76 (138)
T ss_pred EeHHHHHh-------ccCCeEEEEEEEeecCCCcccCCCcEEEEEEEECCCCCCCCcEEEEEECCChhhCCCCCCCCEEE
Confidence 46777762 468889999999875 3345546777889998872 4677766554422222358999999
Q ss_pred EEEEEeCCCCCCcceeEEE-EeEEEEeeCC
Q 010544 104 VEGMLKNPPEGTKQKIELR-VQKVVDVGMV 132 (507)
Q Consensus 104 V~G~v~~~~~g~~~~~El~-v~~i~vls~a 132 (507)
+.+.-...-.|+...+--. ...+-+....
T Consensus 77 l~~~kv~~~~g~~~~~~~~~~ss~avf~~~ 106 (138)
T cd04497 77 LRRVKIQSYNGKPQGISNDRGSSWAVFRGD 106 (138)
T ss_pred EEEEEEEEECCceEEEECCCceeEEEEcCC
Confidence 9986554433322222222 3345565554
No 212
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=54.78 E-value=66 Score=24.64 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcC-CCCceEEEEEeCCcchhcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDG-SCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~-sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~ 105 (507)
.+.|.|..++..| -+..++|... ++ ..|.+-++.+. . ...+..|+.|.+.
T Consensus 6 ~l~a~V~~v~~~G--~~vRlEl~~~~~~-~~iEvel~~~~-~-~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVG--PEVRLELKRLDDG-EPIEVELPRER-R-QLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecC--CeEEEEEEECCCC-CEEEEEeCHhH-H-hcCCCCCCEEEEE
Confidence 5789999999999 7999999765 44 47999988876 2 2245569998775
No 213
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.89 E-value=26 Score=42.28 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=30.2
Q ss_pred CCCEEEEEEEEEeeeec---CCc-eeEEEEEEcCCCCceEEEEE
Q 010544 46 AGRQVRVGGWVKTGREQ---GKG-SFAFLEVNDGSCPANLQVIV 85 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~---g~~-kl~Fi~LrD~sg~~~IQvVv 85 (507)
.|.+|++.|.|.++|.. ++| .++|+.|.|.+|. +.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~--ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGS--IEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCc--EEEEe
Confidence 46789999999877653 221 5999999999986 88876
No 214
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=53.11 E-value=57 Score=32.60 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=32.7
Q ss_pred cCcEEEEeeccccCC----CCCCCCccccccccccccCCCH--HHHHHHHHHHHH
Q 010544 321 VSNVYTFGPTFRAEH----SHTSRHLAEFWMVEPEMAFSDL--KDDMNCAEAYVK 369 (507)
Q Consensus 321 ~~rVfeI~p~FRaE~----~~t~rHl~EFtmLE~E~af~d~--~dlm~~~E~li~ 369 (507)
..|+-...+|.|.-+ ..|.||+.=|.|| --.+|.|| ++.+..+-+++-
T Consensus 55 ~~r~~~~QkCiR~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT 108 (232)
T cd00673 55 ANRLVNSQKCIRAGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLT 108 (232)
T ss_pred CCceeeeeeceecCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHH
Confidence 568888889999842 3388999888888 34566675 555555555543
No 215
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=52.57 E-value=1.7e+02 Score=26.14 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=55.9
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGML 108 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v 108 (507)
+++.+|.. +....|+.|++-|++++.=..- .++=+.=...++ .-|+.++-+.. ++ ....||.+.|.|.+
T Consensus 8 ~~l~Evs~----~~~~~g~svR~~GrL~~yD~~~--~~a~l~~~~~~~--~~~l~V~t~~l~~~--~~~~gslyq~iGEl 77 (118)
T PF15490_consen 8 VFLWEVSS----GFVPEGKSVRTFGRLQSYDVAT--SRATLTAQHESD--QHSLKVDTKLLEPF--QARVGSLYQFIGEL 77 (118)
T ss_pred EehHHhcC----ccccCCCeEEEEEEEEEEeccC--CEEEEEeeccCC--CcEEEEEeeEcccc--ccCCCCEEEEEEEE
Confidence 45666631 3457899999999999985555 344332222222 25666665542 12 24689999999999
Q ss_pred eCCCCCCcceeEEEEeEEEEeeC
Q 010544 109 KNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 109 ~~~~~g~~~~~El~v~~i~vls~ 131 (507)
...+. .++..|++.=+.++.-
T Consensus 78 ~~~~~--~~~~~L~ARV~r~VdG 98 (118)
T PF15490_consen 78 EHQPQ--DGGIVLKARVLRCVDG 98 (118)
T ss_pred EEEcC--CCcEEEEEEEEEecCC
Confidence 88732 2466677654444443
No 216
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=52.22 E-value=1.3e+02 Score=27.88 Aligned_cols=87 Identities=22% Similarity=0.201 Sum_probs=47.7
Q ss_pred CCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCC-CC-----ceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCC
Q 010544 40 DGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGS-CP-----ANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE 113 (507)
Q Consensus 40 ~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~s-g~-----~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~ 113 (507)
.......|+.|+|.|+|.-.-..+.+---|+.+.+-. +. ..=|+|.-+-...+ ..-..-+.|.|+|+++....
T Consensus 48 ~~v~~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~~-~~~~~~~pv~V~G~l~~~~~ 126 (146)
T PF11736_consen 48 PVVKALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKPI-PVDSLYDPVWVEGTLKVERS 126 (146)
T ss_pred chhHHhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCCc-cccccceeEEEEEEEEeccc
Confidence 3345678999999999999875432234677777632 11 00132211110001 11123579999999987653
Q ss_pred C---CcceeEEEEeEEE
Q 010544 114 G---TKQKIELRVQKVV 127 (507)
Q Consensus 114 g---~~~~~El~v~~i~ 127 (507)
. ....+.+.+.+|+
T Consensus 127 ~~~~~~~~Y~m~a~~v~ 143 (146)
T PF11736_consen 127 SSDLGTSGYSMDADSVE 143 (146)
T ss_pred cchheeEEEEEEeeEEE
Confidence 2 1234555555554
No 217
>COG3689 Predicted membrane protein [Function unknown]
Probab=52.14 E-value=65 Score=32.74 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch----h--cccCCCCcEEEEEEEEeCCCCC--
Q 010544 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----L--GQLVPTGTCVYVEGMLKNPPEG-- 114 (507)
Q Consensus 43 ~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~----~--~~~L~~gs~V~V~G~v~~~~~g-- 114 (507)
.+..|++|.+.|+|.+=-..++ --++..| -|. +=|+.+..... . ...++..++|.|+|++...--.
T Consensus 171 def~Gk~Ie~tGFVy~~~~~~~--N~lflaR--Fgi--icC~ADa~vygl~v~~~~~~~y~ndtWltvkGtl~~e~~~~~ 244 (271)
T COG3689 171 DEFAGKKIEFTGFVYNDESFPK--NYLFLAR--FGI--ICCAADAGVYGLLVELDNQTDYKNDTWLTVKGTLSSEYLSDF 244 (271)
T ss_pred hhhcCceEEEEEEEECCCCCCc--ceeehhh--hhe--eeeeccceeEEEEEEccccccCCCCceEEEEeEEEeeecCch
Confidence 4578999999999998656664 3444445 232 55565555421 1 1347889999999999764221
Q ss_pred CcceeEEEEeEEEEeeCCC
Q 010544 115 TKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 115 ~~~~~El~v~~i~vls~a~ 133 (507)
++.-.-|++++++.+.+++
T Consensus 245 ~~~ipvi~v~sv~~I~kP~ 263 (271)
T COG3689 245 KKRIPVIEVDSVEVIPKPA 263 (271)
T ss_pred hhcCcEEEeeeeeecCCCC
Confidence 2345778999999988864
No 218
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=52.02 E-value=80 Score=28.01 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=39.0
Q ss_pred CCEEEEEEEEEeeeecCCceeEEEEE-----EcCC---CCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCC
Q 010544 47 GRQVRVGGWVKTGREQGKGSFAFLEV-----NDGS---CPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 47 g~~V~V~GwV~~iR~~g~~kl~Fi~L-----rD~s---g~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
++.+++.|.|.+......+...|..- ..+. ....+++.++++.. ..+..||.|.++|++...+
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~Gd~i~~~g~l~~~~ 145 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ---PRLQPGDRIRVRGKLKPPS 145 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc---cccCCCCEEEEEEEEecCC
Confidence 88999999998874444323334321 1111 11245665555532 1478999999999998765
No 219
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=51.98 E-value=86 Score=30.27 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=30.1
Q ss_pred EEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEE
Q 010544 81 LQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKV 126 (507)
Q Consensus 81 IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i 126 (507)
+.|++-.+.. .+.+.|.+||.|.|+|.+..+.- + +...+||.+++|
T Consensus 55 i~V~~Wg~~Ae~va~~L~KGd~V~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 55 LRCSIWRQAAENVAESLTKGMRVIVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEecHHHHHHHHhcCCCCEEEEEEEEEcCceECCCCCEEEEEEEEEEEc
Confidence 6777766542 24567999999999999987632 1 112466666543
No 220
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=50.59 E-value=1.1e+02 Score=28.64 Aligned_cols=89 Identities=22% Similarity=0.206 Sum_probs=54.0
Q ss_pred cccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEE----cCCCCceEEEEEeCCcc-------hh
Q 010544 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVN----DGSCPANLQVIVDKDVA-------DL 92 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~Lr----D~sg~~~IQvVv~~~~~-------~~ 92 (507)
......+..+++... .....|+.|+..|.|.++++.. +-+.|.|. |.+|. =|.- +.... .|
T Consensus 14 ~~~~~~~~~~~v~~~---p~~~~G~~VrwGG~I~~v~n~~--~~T~leV~~~PLd~~gr--P~~~-~~s~GRFla~~~gF 85 (160)
T PF03843_consen 14 DQVDPQPSFSQVRAN---PDAYQGQQVRWGGVIVNVRNLP--DQTELEVVQYPLDSSGR--PQTD-DPSQGRFLARVPGF 85 (160)
T ss_pred CCCCccCCHHHHHhC---hhhcCCCEEEECCEEEEEEECC--CceEEEEEEccCCCCCC--cCCC-CCCCCEEEEEeCCC
Confidence 334445677777742 3457899999999999999988 45555543 22221 0100 00000 12
Q ss_pred c--ccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 93 G--QLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 93 ~--~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
. .....|-.|.|.|+|.....++.++.+
T Consensus 86 LDP~~y~~Gr~vTV~G~v~g~~~~~ige~~ 115 (160)
T PF03843_consen 86 LDPAIYAPGRLVTVVGTVTGMETGKIGEYP 115 (160)
T ss_pred cCHHHcCCCCEEEEEEEecceEEeeeCCCc
Confidence 1 225789999999999887655455544
No 221
>PRK04036 DNA polymerase II small subunit; Validated
Probab=49.58 E-value=64 Score=35.83 Aligned_cols=62 Identities=27% Similarity=0.402 Sum_probs=45.3
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchh---cccCCCCcEEEEEEEEeC
Q 010544 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL---GQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~---~~~L~~gs~V~V~G~v~~ 110 (507)
.++++.|-|-|..+|.-++|. ..+.|-|.+|. +++++.++...+ ...+-.|.+|.|.|+...
T Consensus 152 ~~~~~~viG~v~~~~~~~~g~-~~~~LED~sgr--v~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~ 216 (504)
T PRK04036 152 GGEEVSIIGMVSDIRSTKNGH-KIVELEDTTGT--FPVLIMKDREDLAELADELLLDEVIGVEGTLSG 216 (504)
T ss_pred CCceEEEEEEEEEeecccCCc-eEEEEECCCCe--EEEEeecchhhhhhhhhcccCceEEEEEEEEcC
Confidence 568899999999998655432 24779999986 999986553222 224567999999998753
No 222
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=47.90 E-value=1.4e+02 Score=37.00 Aligned_cols=83 Identities=12% Similarity=0.227 Sum_probs=52.8
Q ss_pred CCCEEEEEEEEEee--eecCCc-eeEEEEEEcCCCCceEEEEEeCCc-chhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTG--REQGKG-SFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~i--R~~g~~-kl~Fi~LrD~sg~~~IQvVv~~~~-~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
....|+|.|.|-.+ |..++| .+.-+.|.|.+..-.+...+..+. ......|..|++|.|.|.+....- .+++.+
T Consensus 6 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~--~~~~~~ 83 (1213)
T TIGR01405 6 EENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSEEDPEKFDGIKIGKWVRARGKIELDNF--SRDLQM 83 (1213)
T ss_pred cCCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccccchHHHhhcCCCcEEEEEEEEeccCC--CCceEE
Confidence 35689999999664 443332 444578999987523333332221 122345899999999999987642 347777
Q ss_pred EEeEEEEee
Q 010544 122 RVQKVVDVG 130 (507)
Q Consensus 122 ~v~~i~vls 130 (507)
.+..+..+.
T Consensus 84 ~~~~~~~~~ 92 (1213)
T TIGR01405 84 IIKDIEEIP 92 (1213)
T ss_pred EeeeeeecC
Confidence 777776543
No 223
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=47.46 E-value=52 Score=40.20 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeec
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITT 195 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~ 195 (507)
..-.+|..+...+-+.|.++|++|++||-+..
T Consensus 930 ~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~ 961 (1351)
T KOG1035|consen 930 INNELREYVVEEVVKIFRKHGAIELETPPLSL 961 (1351)
T ss_pred hHHHHHHHHHHHHHHHHHHhcceeccCCcccc
Confidence 34467888888999999999999999995543
No 224
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=46.28 E-value=33 Score=26.67 Aligned_cols=39 Identities=41% Similarity=0.601 Sum_probs=32.4
Q ss_pred HHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHH
Q 010544 238 VIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276 (507)
Q Consensus 238 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
-|+.-|+.|+.+|+++...+.|+.++.-+-.||.++...
T Consensus 4 ~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~LK~~~~~~ 42 (56)
T PF00458_consen 4 QIAAQGDKVRKLKAEKADKEEIDAAVAKLLELKAELKEL 42 (56)
T ss_dssp HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999999998766544
No 225
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=43.94 E-value=1.6e+02 Score=27.95 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=32.9
Q ss_pred EEEEEeCC-cc-hhcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEE----EEeeCC
Q 010544 81 LQVIVDKD-VA-DLGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKV----VDVGMV 132 (507)
Q Consensus 81 IQvVv~~~-~~-~~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i----~vls~a 132 (507)
+.|++-.+ .. .+.+.|+.|+.|.|+|.+..+. .| ....+||.++++ +.|++.
T Consensus 55 ~~Vv~fg~~~Ae~~~~~LkKG~~V~VeGrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 55 HRVVIFNEGLCKVAEQYLKKGAKVYIEGQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred EEEEEeChHHHHHHHHhcCCCCEEEEEEEEEeCcEECCCCCEEEEEEEEEEecccceEEcccC
Confidence 55665543 22 2345689999999999997653 12 224678887654 566543
No 226
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=43.30 E-value=85 Score=26.38 Aligned_cols=63 Identities=17% Similarity=0.319 Sum_probs=43.7
Q ss_pred EEEEcCCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCC----CcceeEEEEeEEEEeeCCC
Q 010544 70 LEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 70 i~LrD~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g----~~~~~El~v~~i~vls~a~ 133 (507)
+.|-|..|. .||+.+.+.... |...|.-|++..++-.......+ ....+.|....-+.+.+++
T Consensus 2 mvL~De~G~-~I~A~I~~~~~~~f~~~l~Eg~~y~i~~F~V~~~~~~yr~t~h~y~I~f~~~T~V~~~~ 69 (95)
T PF02721_consen 2 MVLVDEKGD-KIQATIPKELVDKFKDSLKEGSWYTISNFTVSPNSGSYRPTDHKYKINFMPNTKVTEID 69 (95)
T ss_pred EEEEecCCC-EEEEEECHHHHHHHHhhcccCCEEEeEeEEEEeCCCceeccCCCEEEEECCcCeEEECC
Confidence 467888885 899999887653 56778899999887655544333 2355666666666677765
No 227
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=41.42 E-value=99 Score=24.19 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=33.2
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
.+.|.|.++...| +|+.|.+..+ +...+...... ....++.||.|.|.
T Consensus 6 ~~~g~V~~v~~~g----~~v~l~~~~~---~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG----AYVSLLEYGN---IEGMILLSELSRRRIRSIRKLVKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE----EEEEEcCCCC---eEEEEEhHHcCCcccCCHHHeeCCCCEEEEE
Confidence 5689999999887 8999987543 56666543321 12346889998875
No 228
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=39.31 E-value=59 Score=31.14 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=34.2
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEe---EEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQ---KVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~---~i~vls~a 132 (507)
+.|++-.+... +.+.|.+||.|.|+|.+..+.- | ....+||.+. ++++|++.
T Consensus 56 ~~V~~fgk~Ae~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 56 HRVVLFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEehhHHHHHHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 56665554322 3456899999999999977632 1 1235777766 67777653
No 229
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=39.03 E-value=1.2e+02 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=31.4
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc---------hhcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---------DLGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---------~~~~~L~~gs~V~V~ 105 (507)
.|.|.|.++...| +|+.|..+ +...+..... ++.+.++.|+.|.+.
T Consensus 6 ~V~g~V~~i~~~G----~fV~l~~~-----v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG----VFFRLSSS-----IVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc----EEEEeCCC-----CEEEEEHHHccCccccChhhHhcccCCCCEEEEE
Confidence 6789999998887 89999643 5666652221 123457888888764
No 230
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=38.07 E-value=36 Score=37.90 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=33.7
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccc--cCCCHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEM--AFSDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~--af~d~~dlm~~~E~li~~i 371 (507)
|+||||+|||.+.....+|+..+.+...-. .-.|+.|+...++.++..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 999999999886422456776666653212 1237888988888888653
No 231
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=37.20 E-value=1.3e+02 Score=29.06 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=50.2
Q ss_pred CCCCCCEEEEEEEEEeeeecCCceeEEEEEE----cCCCCceEEEEEeCCcc-------hhc--ccCCCCcEEEEEEEEe
Q 010544 43 AGLAGRQVRVGGWVKTGREQGKGSFAFLEVN----DGSCPANLQVIVDKDVA-------DLG--QLVPTGTCVYVEGMLK 109 (507)
Q Consensus 43 ~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~Lr----D~sg~~~IQvVv~~~~~-------~~~--~~L~~gs~V~V~G~v~ 109 (507)
....|+.|++-|.|-++++.. +-+-+.+. |.++. =+.- +.... .|. ... .|-.|.|.|++.
T Consensus 44 ~~y~G~~Vr~GG~I~~v~N~~--~~T~lEVv~~PLd~~gr--P~~~-~~s~GRFla~~~gFLDP~~y-~Gr~VTVvG~i~ 117 (182)
T TIGR00752 44 LLYVGQTARFGGKVVNVTNLA--NQTKLEIASLPLDSIAK--PFVE-LQSDGRFIAYFNGFLDPVNL-RERYVTVGGQIA 117 (182)
T ss_pred hhcCCCEEEECCEEEEEEECC--CceEEEEEEcccCCCCC--cCCC-CCCCCEEEEEeCCCcChhhc-CCCEEEEEEEec
Confidence 456899999999999999887 33444432 22221 0000 00000 121 124 599999999999
Q ss_pred CCCCCCcceeE-----EEEeEEEEee
Q 010544 110 NPPEGTKQKIE-----LRVQKVVDVG 130 (507)
Q Consensus 110 ~~~~g~~~~~E-----l~v~~i~vls 130 (507)
...+++.|+.+ |.++.+.+=.
T Consensus 118 G~e~gkIGe~~Y~yPvv~~~~~~lW~ 143 (182)
T TIGR00752 118 GTEKGKIEQAPYTFPVVQADGYRIWH 143 (182)
T ss_pred ceEEeeeCCCcceeEEEEeeeEEecc
Confidence 88777777775 6666665544
No 232
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=35.99 E-value=98 Score=23.87 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=32.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
.+.|+|.++.+.| +|+.|.++ ++..+...... ....+..|+.|.|.
T Consensus 3 ~~~g~V~~v~~~G----~~V~l~~~-----~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG----CIVSFYNN-----VKGFLPKSELSEAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc----EEEEECCC-----CEEEEEHHHcChhhcCCHHHcccCCCEEEEE
Confidence 4789999998887 89999543 67777654321 12347889988876
No 233
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.35 E-value=9.5 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=0.0
Q ss_pred EEeeccccC--CCCCCCCcccccccccc
Q 010544 326 TFGPTFRAE--HSHTSRHLAEFWMVEPE 351 (507)
Q Consensus 326 eI~p~FRaE--~~~t~rHl~EFtmLE~E 351 (507)
+||++|||| .-.+--+.-||||-|+|
T Consensus 214 qiG~~fRNEISpRsGLlRvrEF~maEIE 241 (599)
T KOG2298|consen 214 QIGKSFRNEISPRSGLLRVREFTMAEIE 241 (599)
T ss_pred HhchHhhhccCcccCceeEEEeehHHhh
No 234
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=35.14 E-value=1.1e+02 Score=23.60 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=31.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc------hhcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~------~~~~~L~~gs~V~V~ 105 (507)
.+.|+|.++...| +|+.|-++ +...+..... .....++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~G----v~V~l~~~-----~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG----VFVTLGRG-----VDARVRVSELSDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc----EEEEeCCC-----CEEEEEHHHCCchhhcCHhhccCCCCEEEEE
Confidence 4799999999887 89999653 5556654321 112347888888775
No 235
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=4.1e+02 Score=24.90 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=56.6
Q ss_pred CCCCCEEEEEEEEEe--e-eecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 44 GLAGRQVRVGGWVKT--G-REQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~--i-R~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
...|+++++-|-|.. + |.-+..++.|.+ .|+.. +++|......++ +++-|.-|-++|.+.... -
T Consensus 48 ~~~G~rlR~GGlV~~GSv~R~~~~~~v~F~v-tD~~~--~v~V~Y~GiLPD---LFREGQgVVa~G~~~~~~-----~-- 114 (153)
T COG2332 48 VETGQRLRLGGLVEAGSVQRDPGSLKVSFVV-TDGNK--SVTVSYEGILPD---LFREGQGVVAEGQLQGGG-----V-- 114 (153)
T ss_pred ccCCcEEEEeeeEeeceEEecCCCcEEEEEE-ecCCc--eEEEEEeccCch---hhhcCCeEEEEEEecCCC-----E--
Confidence 345899999999965 3 534444888865 58875 599998887654 467899999999986532 1
Q ss_pred EEEeEEEEeeCCCCCCCCC
Q 010544 121 LRVQKVVDVGMVDPAKYPI 139 (507)
Q Consensus 121 l~v~~i~vls~a~~~~~Pl 139 (507)
+++. +||.+++ ++|-.
T Consensus 115 f~A~--~vLAKHd-EnY~P 130 (153)
T COG2332 115 FEAK--EVLAKHD-ENYTP 130 (153)
T ss_pred EEee--ehhhcCC-cccCC
Confidence 3443 6788887 56643
No 236
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=32.54 E-value=2.5e+02 Score=24.48 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=26.5
Q ss_pred hcccCCCCcEEEEEEEEeCCCCC-CcceeEEEEeEEEEe
Q 010544 92 LGQLVPTGTCVYVEGMLKNPPEG-TKQKIELRVQKVVDV 129 (507)
Q Consensus 92 ~~~~L~~gs~V~V~G~v~~~~~g-~~~~~El~v~~i~vl 129 (507)
+...++.|+.|.|.|.+...... ....+=|+++.++.+
T Consensus 64 lt~~i~~Gs~i~v~GFla~~~~~sg~~~lvlha~qi~~i 102 (103)
T COG2965 64 LTQSITVGSYILVVGFLACHKRRSGLSKLVLHAEQIEFI 102 (103)
T ss_pred hhhccccccEEEEEEEEEeecccCCccEEEEEeeEEEec
Confidence 34568999999999999765432 334566777766653
No 237
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=31.34 E-value=63 Score=30.86 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCC-------------CHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-------------DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~-------------d~~dlm~~~E~li~~i 371 (507)
|+||||+||..+.. +..|.++|=+-++.. |+.|+...+|.++..+
T Consensus 80 ~lFEiG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 80 RLFEIGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred eEEEeEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
No 238
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.89 E-value=59 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEE
Q 010544 167 RIRNALAYATHTFLQKQGFLYI 188 (507)
Q Consensus 167 ~~rs~i~~~~r~fl~~~~f~ev 188 (507)
+.|.+|+..||+||...|=+.|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4688999999999999997765
No 239
>PRK06386 replication factor A; Reviewed
Probab=29.26 E-value=4.2e+02 Score=28.32 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=53.3
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeee------ecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGR------EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVY 103 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR------~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~ 103 (507)
.+|+||. ..++.|.|.|+|-.+- +-|...+.=..|-|.||. |-.++.... ..+..|++|.
T Consensus 3 ~kI~DI~--------~~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~--I~fT~W~~~----~~l~~Gd~v~ 68 (358)
T PRK06386 3 SKISDIN--------AARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGT--VPFTAWEFP----DAVKSGDVIE 68 (358)
T ss_pred cchhhcC--------CCCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcce--EEEEecCCc----ccCCCCCEEE
Confidence 4577775 2466788888887542 223223445568899885 888887632 3578999999
Q ss_pred EEEEEeCCCCCCcceeEEEEeE
Q 010544 104 VEGMLKNPPEGTKQKIELRVQK 125 (507)
Q Consensus 104 V~G~v~~~~~g~~~~~El~v~~ 125 (507)
+.+.....=. |.++|.+.+
T Consensus 69 i~na~v~~~~---G~~~Lnv~~ 87 (358)
T PRK06386 69 IKYCYSKEYN---GKIRIYFDS 87 (358)
T ss_pred EEeEEEeeEC---CEEEEEEcC
Confidence 9988776543 477888853
No 240
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=28.87 E-value=2.4e+02 Score=21.36 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=36.4
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~ 105 (507)
.+.|.|..+...| ...++.++-+.+. .|-+.+...... .-.|..|+-|.+.
T Consensus 6 ~l~g~V~~ie~~g--~~~~v~~~~~~~~-~l~a~it~~~~~-~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLG--SEVEVTLDLGGGE-TLTARITPESAE-ELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESS--SEEEEEEEETTSE-EEEEEEEHHHHH-HCT-STT-EEEEE
T ss_pred EEEEEEEEEEECC--CeEEEEEEECCCC-EEEEEEcHHHHH-HcCCCCCCEEEEE
Confidence 6899999999999 7899998877652 477777765421 1247889988764
No 241
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=27.43 E-value=54 Score=36.53 Aligned_cols=31 Identities=13% Similarity=0.352 Sum_probs=25.3
Q ss_pred HHHHHHhCCcEEEccCeeecCCCCCCcccceee
Q 010544 176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVT 208 (507)
Q Consensus 176 ~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~ 208 (507)
-++-|..-|+++-+|-.|+. |..+++.|.+.
T Consensus 71 p~~V~kASGHvd~FsDplv~--c~~c~~~yRAD 101 (558)
T COG0423 71 PEEVWKASGHVDKFSDPLVE--CKKCGERYRAD 101 (558)
T ss_pred cHHHhhhcCcccccccceee--ccccchhhhhh
Confidence 46788899999999988887 77778887753
No 242
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=26.16 E-value=1.8e+02 Score=22.48 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=31.0
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
.+.|+|.++...| +|+.|.+. + +..++...... ....++.||.|.|.
T Consensus 5 ~v~g~V~~i~~~g----~~v~l~~~-~---~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG----VFIDIDGT-N---VSGLCHKSEISDNRVADASKLFRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce----EEEEECCC-C---eEEEEEHHHCCCCccCCHhHeecCCCEEEEE
Confidence 4799999999877 88998652 1 45555433211 12346889998875
No 243
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=25.58 E-value=2e+02 Score=35.45 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=55.5
Q ss_pred EEEEEEEEEee----eecCCceeEEEEEEcCCCCceEEEEEeCCc-chhcccCCCCcEEEEEEEEeCCCCCCcceeEEEE
Q 010544 49 QVRVGGWVKTG----REQGKGSFAFLEVNDGSCPANLQVIVDKDV-ADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (507)
Q Consensus 49 ~V~V~GwV~~i----R~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~-~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v 123 (507)
.|+|.|.|-.+ .+.|+ ++.=+.+.|++..-.+|.....+. ......|..|++|.|+|.+.... -.+++.+.+
T Consensus 241 ~v~v~G~IF~~e~~~~ksGr-~l~~i~vTD~t~Sl~~k~f~~~~ed~~~~~~ik~g~wvk~~g~v~~d~--f~~~l~m~i 317 (1444)
T COG2176 241 RVKVEGYIFKIEIKELKSGR-TLLNIKVTDYTSSLILKKFLRDEEDEKKFDGIKKGMWVKARGNVQLDT--FTRDLTMII 317 (1444)
T ss_pred ceEEEEEEEEEeeeecccCc-EEEEEEEecCchheeehhhccccccHHHHhhcccCcEEEEEEEEEecc--cccceEEEh
Confidence 49999999664 34554 566678889986545666655322 22446789999999999999875 346777887
Q ss_pred eEEEEee
Q 010544 124 QKVVDVG 130 (507)
Q Consensus 124 ~~i~vls 130 (507)
..|.-+.
T Consensus 318 ~~I~ei~ 324 (1444)
T COG2176 318 NDINEIE 324 (1444)
T ss_pred hhhhhhh
Confidence 7765554
No 244
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=23.81 E-value=1.9e+02 Score=24.16 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=32.6
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch---------hcccCCCCcEEEEE
Q 010544 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD---------LGQLVPTGTCVYVE 105 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~---------~~~~L~~gs~V~V~ 105 (507)
.|+ .+.|.|.++-..- .-+|++|.++ ....+..+... ..+.++.||.|.|.
T Consensus 7 ~G~--iy~g~V~~i~~~~--~GaFV~l~~g-----~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~Vq 66 (88)
T cd04453 7 VGN--IYLGRVKKIVPGL--QAAFVDIGLG-----KNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQ 66 (88)
T ss_pred CCC--EEEEEEEEeccCC--cEEEEEeCCC-----CEEEEEhHHcCchhccccCCHHHcCCCCCEEEEE
Confidence 455 5689999997752 1399999764 34455443221 13457889988775
No 245
>PF14485 DUF4431: Domain of unknown function (DUF4431)
Probab=23.77 E-value=90 Score=23.41 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCC
Q 010544 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEG 114 (507)
Q Consensus 81 IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g 114 (507)
+|++++.+..+..+.+ .|--|.|+|.+.....+
T Consensus 2 vQL~l~~~~~~~~~~~-~Gk~V~V~G~l~~a~t~ 34 (48)
T PF14485_consen 2 VQLILSEEDYSYLKSL-LGKRVSVTGKLFHAHTG 34 (48)
T ss_pred eEEEeChhhhHHHHHh-cCCeEEEEEEEeeccCc
Confidence 8999866554333333 69999999999887653
No 246
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=23.24 E-value=79 Score=35.64 Aligned_cols=32 Identities=34% Similarity=0.471 Sum_probs=24.7
Q ss_pred cEEEEeeccccCCCCCCC---CccccccccccccCCC
Q 010544 323 NVYTFGPTFRAEHSHTSR---HLAEFWMVEPEMAFSD 356 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~r---Hl~EFtmLE~E~af~d 356 (507)
.+-|||++||||-+ .+. -+-||+|+|+|. |.+
T Consensus 185 giaQiGk~fRNEIs-Pr~~l~R~REF~q~EiE~-F~~ 219 (551)
T TIGR00389 185 GVAQIGKSFRNEIS-PRNGLFRVREFEQAEIEF-FVH 219 (551)
T ss_pred eehhhhHhhhcccC-cccceEEeehhhhchhhe-ecC
Confidence 68899999999954 332 356999999987 543
No 247
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=22.82 E-value=2.8e+02 Score=20.78 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=29.9
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
.+.|.|..+...| +|+.|-++ +...+...... ....++.||.|.|.
T Consensus 3 ~~~g~V~~v~~~G----~~v~l~~~-----~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG----AFVEILPG-----KDGLVHISELSDERVEKVEDVLKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE----EEEEeCCC-----CEEEEEhHHcCCccccCHHHccCCCCEEEEE
Confidence 4689999999887 88998654 44555433211 11236778888775
No 248
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=22.53 E-value=2e+02 Score=32.81 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=30.8
Q ss_pred cCcEEEEeecccc---CCCCCCCCccccccccccccCCCH--HHHHHHHHHHH
Q 010544 321 VSNVYTFGPTFRA---EHSHTSRHLAEFWMVEPEMAFSDL--KDDMNCAEAYV 368 (507)
Q Consensus 321 ~~rVfeI~p~FRa---E~~~t~rHl~EFtmLE~E~af~d~--~dlm~~~E~li 368 (507)
..|+=...+|.|. |+.-+.||++=|-||=- .+|.|| ++.+...-++|
T Consensus 57 ~~r~~~~QkCiR~~Dle~VG~~rHhTfFEMlGn-fSfgdYfK~eai~~awe~l 108 (594)
T PRK01584 57 GTRLVDVQKCLRTGDIDEVGDLSHLTFFEMLGN-WSLGAYFKEESIKYSFEFL 108 (594)
T ss_pred CCCccccccccccccccccCCCcchhHHHhhcc-ccHhhhhHHHHHHHHHHHh
Confidence 4566777799998 45557899977777642 455665 44555555544
No 249
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=22.52 E-value=3.5e+02 Score=20.56 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=33.8
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~ 105 (507)
.+.|.|.++...| ..+-+.++-+.+. .|.+.+..+... ...|..|+-|.+.
T Consensus 8 ~l~g~I~~i~~~g--~~~~v~l~~~~~~-~l~a~i~~~~~~-~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGD--VNAEVDLLLGGGT-KLTAVITLESVA-ELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECC--CeEEEEEEECCCC-EEEEEecHHHHh-hCCCCCCCEEEEE
Confidence 6899999998887 5666666644331 477777765421 2247788888654
No 250
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=22.47 E-value=2.6e+02 Score=20.76 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=30.6
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch--h----cccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD--L----GQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~--~----~~~L~~gs~V~V~ 105 (507)
.+.|.|..+...| +|+.|.++ ++..+...... + ...++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~g----~~v~i~~~-----~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG----AFVELGGG-----ISGLVHISQIAHKRVKDVKDVLKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee----EEEEECCC-----CEEEEEhHHcCCcccCCHHHccCCCCEEEEE
Confidence 4689999998877 88888543 45665543211 1 1346889999875
No 251
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=22.38 E-value=3.8e+02 Score=23.00 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=40.1
Q ss_pred eEEEEEEcCCCCceEEEEEeCCcchh--cccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEee
Q 010544 67 FAFLEVNDGSCPANLQVIVDKDVADL--GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVG 130 (507)
Q Consensus 67 l~Fi~LrD~sg~~~IQvVv~~~~~~~--~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls 130 (507)
--=+.|.||... +|.++....... ...|..|++|.+.-.....-.. +.--+.+.+++++.
T Consensus 39 RyR~~lSDG~~~--~~amLatqln~lv~~g~l~~~siirl~~y~~n~v~~--~k~iiiil~leVv~ 100 (101)
T PF04057_consen 39 RYRLVLSDGVHS--IQAMLATQLNHLVESGELQKGSIIRLKQYTCNTVKN--GKKIIIILDLEVVQ 100 (101)
T ss_dssp EEEEEEESSSEE--EEEEESGGGHHHHHTTSSSTT-EEEEEEEEEEESTT--SSEEEEEEEEEEEE
T ss_pred eEEEEEEChHHH--HHHHhHHHhHHHHhcCCcccCCEEEEeEEEEeeccC--CCEEEEEEeeEEEe
Confidence 444779999864 999988765332 2468999999998776544320 23447777787764
No 252
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=22.23 E-value=2.7e+02 Score=21.51 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.1
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcC
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDG 75 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~ 75 (507)
.+.|+|..+.+.| +|+.|.++
T Consensus 6 ~~~g~V~~i~~~G----~fv~l~~~ 26 (72)
T cd05689 6 RLFGKVTNLTDYG----CFVELEEG 26 (72)
T ss_pred EEEEEEEEEEeeE----EEEEcCCC
Confidence 5899999999988 89999753
No 253
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=22.12 E-value=4.3e+02 Score=21.42 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=31.3
Q ss_pred eEEEEEEcCCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEe
Q 010544 67 FAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLK 109 (507)
Q Consensus 67 l~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~ 109 (507)
..=+.|.|..|. .||+.+.++..+ |...|..|.+..+.+.-.
T Consensus 20 ~~~miL~De~G~-~I~a~i~~~~~~~f~~~L~eg~vy~is~f~v 62 (86)
T cd04480 20 SLEMVLVDEKGN-RIHATIPKRLAAKFRPLLKEGKWYTISNFEV 62 (86)
T ss_pred EEEEEEEcCCCC-EEEEEECHHHHHhhhhhceeCCEEEEeeEEE
Confidence 333568899885 799999887543 667789999999986433
No 254
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=20.70 E-value=2.9e+02 Score=20.50 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=30.0
Q ss_pred EEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 51 RVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 51 ~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
.+.|+|..+...| .|+.|.++ +..++...... ....++.||.|.|.
T Consensus 3 ~~~g~V~~i~~~G----~fv~l~~~-----~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd05685 3 VLEGVVTNVTDFG----AFVDIGVK-----QDGLIHISKMADRFVSHPSDVVSVGDIVEVK 54 (68)
T ss_pred EEEEEEEEEeccc----EEEEcCCC-----CEEEEEHHHCCCccccCHHHhcCCCCEEEEE
Confidence 4789999998888 78998643 45555433211 11236788888775
Done!