Query 010544
Match_columns 507
No_of_seqs 205 out of 1453
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nem_A Aspartyl-tRNA synthetas 100.0 6.1E-81 2.1E-85 662.5 35.9 360 27-505 2-376 (438)
2 3m4p_A Ehasnrs, asparaginyl-tR 100.0 7E-81 2.4E-85 665.1 35.0 365 27-505 17-394 (456)
3 2xgt_A Asparaginyl-tRNA synthe 100.0 3.4E-78 1.2E-82 642.2 33.3 364 31-505 2-373 (435)
4 1wyd_A Hypothetical aspartyl-t 100.0 1.3E-75 4.5E-80 620.8 34.7 358 28-504 3-366 (429)
5 3i7f_A Aspartyl-tRNA synthetas 100.0 5.5E-76 1.9E-80 635.6 31.3 363 28-505 49-486 (548)
6 1n9w_A Aspartyl-tRNA synthetas 100.0 7.9E-75 2.7E-79 613.7 31.1 348 29-504 2-359 (422)
7 4ex5_A Lysine--tRNA ligase; st 100.0 2.2E-74 7.6E-79 622.0 30.2 367 24-503 59-459 (529)
8 1x54_A Asparaginyl-tRNA synthe 100.0 7E-74 2.4E-78 608.7 32.5 361 27-504 2-371 (434)
9 3bju_A Lysyl-tRNA synthetase; 100.0 3.4E-73 1.2E-77 614.7 31.5 376 24-503 29-439 (521)
10 1e1o_A Lysyl-tRNA synthetase, 100.0 1.3E-72 4.3E-77 607.7 32.0 367 25-504 38-435 (504)
11 1eov_A ASPRS, aspartyl-tRNA sy 100.0 5.8E-72 2E-76 601.3 34.0 367 27-504 21-422 (487)
12 3a74_A Lysyl-tRNA synthetase; 100.0 3.6E-72 1.2E-76 603.1 28.7 366 25-504 30-425 (493)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 4.3E-71 1.5E-75 604.5 32.0 355 27-504 2-490 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 4.4E-70 1.5E-74 597.9 31.6 251 28-378 2-262 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 2.2E-59 7.6E-64 512.1 27.3 267 24-418 7-289 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 1.1E-50 3.7E-55 418.9 20.3 225 158-504 29-278 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 4.4E-44 1.5E-48 362.6 19.5 217 151-504 1-229 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.8 1.5E-20 5.2E-25 189.6 2.9 168 115-370 23-205 (290)
19 12as_A Asparagine synthetase; 99.3 9.2E-11 3.1E-15 117.7 16.3 175 301-505 64-262 (330)
20 2rhq_A Phenylalanyl-tRNA synth 98.8 7.2E-09 2.5E-13 104.5 7.3 69 304-373 110-185 (294)
21 1b7y_A Phers, protein (phenyla 98.7 5.1E-08 1.7E-12 100.6 9.3 66 306-373 177-246 (350)
22 3dsq_A Pyrrolysyl-tRNA synthet 98.4 3.6E-07 1.2E-11 91.8 6.3 48 323-371 151-202 (288)
23 2dq3_A Seryl-tRNA synthetase; 97.9 3.7E-05 1.2E-09 81.3 9.6 34 164-197 170-203 (425)
24 3pco_A Phenylalanyl-tRNA synth 97.8 6E-05 2.1E-09 76.9 9.6 58 314-373 175-236 (327)
25 2i4l_A Proline-tRNA ligase; al 97.8 5.4E-05 1.8E-09 80.6 9.1 35 162-196 63-97 (458)
26 1evl_A Threonyl-tRNA synthetas 97.7 4.5E-05 1.5E-09 79.6 8.0 34 163-196 27-60 (401)
27 1qe0_A Histidyl-tRNA synthetas 97.5 0.00018 6.2E-09 75.1 9.1 34 164-197 14-47 (420)
28 1hc7_A Prolyl-tRNA synthetase; 97.5 0.00038 1.3E-08 74.5 10.8 35 163-197 41-75 (477)
29 1ses_A Seryl-tRNA synthetase; 97.5 0.0005 1.7E-08 72.5 11.5 33 164-196 164-196 (421)
30 2j3l_A Prolyl-tRNA synthetase; 97.5 0.0004 1.4E-08 75.7 10.8 34 163-196 44-77 (572)
31 1nyr_A Threonyl-tRNA synthetas 97.4 0.00026 9E-09 78.4 9.2 34 163-196 268-301 (645)
32 3uh0_A Threonyl-tRNA synthetas 97.4 0.00024 8.3E-09 75.7 8.6 34 163-196 61-95 (460)
33 1wu7_A Histidyl-tRNA synthetas 97.4 0.00067 2.3E-08 71.3 11.8 33 164-196 18-50 (434)
34 1z7m_A ATP phosphoribosyltrans 97.4 0.00081 2.8E-08 68.9 11.8 33 164-196 34-66 (344)
35 3od1_A ATP phosphoribosyltrans 97.4 0.00072 2.5E-08 70.7 11.3 33 164-196 22-54 (400)
36 3qne_A Seryl-tRNA synthetase, 97.3 0.00059 2E-08 73.0 10.1 33 164-196 183-215 (485)
37 3l4g_A Phenylalanyl-tRNA synth 97.3 0.00071 2.4E-08 72.7 10.8 48 323-371 349-398 (508)
38 1h4v_B Histidyl-tRNA synthetas 97.3 0.00078 2.7E-08 70.4 10.3 33 164-196 15-47 (421)
39 1htt_A Histidyl-tRNA synthetas 97.3 0.00087 3E-08 70.1 10.4 33 164-196 16-48 (423)
40 1qf6_A THRRS, threonyl-tRNA sy 97.2 0.00091 3.1E-08 74.1 10.4 34 163-196 268-301 (642)
41 4e51_A Histidine--tRNA ligase; 97.2 0.00079 2.7E-08 71.8 9.6 33 164-196 44-76 (467)
42 1nj8_A Proline-tRNA synthetase 97.2 0.0013 4.5E-08 70.0 10.9 34 163-196 35-68 (459)
43 3kdf_D Replication protein A 3 97.2 0.004 1.4E-07 55.0 12.3 99 25-131 4-111 (132)
44 2dq0_A Seryl-tRNA synthetase; 97.2 0.0008 2.7E-08 71.6 9.0 33 164-196 191-223 (455)
45 3lss_A Seryl-tRNA synthetase; 97.2 0.00052 1.8E-08 73.4 7.2 34 163-196 205-238 (484)
46 4hvc_A Bifunctional glutamate/ 97.1 0.0022 7.5E-08 69.3 11.8 48 323-370 150-199 (519)
47 1nj1_A PROR, proline-tRNA synt 97.1 0.0017 5.7E-08 70.0 10.7 47 323-370 159-209 (501)
48 3err_A Fusion protein of micro 97.1 0.0016 5.6E-08 70.6 10.5 34 163-196 272-305 (536)
49 4gop_B Putative uncharacterize 97.1 0.0056 1.9E-07 54.3 12.3 96 28-131 10-116 (136)
50 4g84_A Histidine--tRNA ligase, 97.1 0.0017 5.9E-08 68.5 10.5 34 163-196 25-58 (464)
51 1wle_A Seryl-tRNA synthetase; 97.1 0.0033 1.1E-07 67.5 12.6 33 164-196 217-249 (501)
52 3net_A Histidyl-tRNA synthetas 97.1 0.00084 2.9E-08 71.5 7.9 46 164-209 24-75 (465)
53 3vbb_A Seryl-tRNA synthetase, 97.1 0.0013 4.5E-08 70.8 9.4 33 164-196 199-231 (522)
54 3rac_A Histidine-tRNA ligase; 97.1 0.0014 4.8E-08 68.0 9.0 31 166-196 37-67 (373)
55 3lc0_A Histidyl-tRNA synthetas 97.0 0.0026 9E-08 67.6 10.5 33 165-197 42-74 (456)
56 3a32_A Probable threonyl-tRNA 97.0 0.0013 4.4E-08 70.2 8.1 33 165-197 48-80 (471)
57 3dm3_A Replication factor A; p 96.9 0.011 3.7E-07 50.3 11.9 90 28-133 4-101 (105)
58 1ati_A Glycyl-tRNA synthetase; 96.9 0.00091 3.1E-08 72.1 6.4 34 164-197 37-72 (505)
59 2cja_A Seryl-tRNA synthetase; 96.9 0.00086 2.9E-08 72.5 6.1 52 323-375 346-400 (522)
60 3ial_A Prolyl-tRNA synthetase; 96.9 0.004 1.4E-07 67.2 11.2 48 323-370 144-193 (518)
61 4g85_A Histidine-tRNA ligase, 96.8 0.0028 9.5E-08 68.3 9.3 34 163-196 78-111 (517)
62 2k50_A Replication factor A re 96.8 0.0053 1.8E-07 52.6 9.0 83 46-132 15-105 (115)
63 3e0e_A Replication protein A; 96.8 0.018 6.2E-07 48.1 11.8 86 30-132 3-96 (97)
64 3kf6_A Protein STN1; OB fold, 96.7 0.016 5.4E-07 53.1 11.9 77 48-131 48-128 (159)
65 1nnx_A Protein YGIW; structura 96.2 0.031 1.1E-06 47.9 9.8 85 29-131 25-109 (109)
66 2pi2_A Replication protein A 3 96.1 0.044 1.5E-06 54.1 12.2 99 25-131 44-151 (270)
67 3mf2_A BLL0957 protein; aminoa 95.6 0.045 1.5E-06 55.9 10.0 71 302-373 142-219 (346)
68 3cmq_A Phenylalanyl-tRNA synth 95.5 0.026 8.9E-07 59.3 8.0 35 315-350 126-160 (415)
69 1g5h_A Mitochondrial DNA polym 95.2 0.075 2.6E-06 56.4 10.5 51 321-374 162-220 (454)
70 3ikl_A DNA polymerase subunit 95.1 0.048 1.6E-06 57.9 8.6 50 323-374 175-230 (459)
71 1o7i_A SSB, SSO2364, single st 95.0 0.096 3.3E-06 45.1 8.9 76 48-132 13-96 (119)
72 2kbn_A Conserved protein; nucl 94.9 0.38 1.3E-05 40.9 12.1 87 30-133 6-95 (109)
73 2zt5_A Glycyl-tRNA synthetase; 94.6 0.024 8.3E-07 63.3 4.8 34 163-196 98-132 (693)
74 1usy_A ATP phosphoribosyltrans 94.1 0.11 3.7E-06 51.3 7.8 31 322-356 71-101 (275)
75 3kf8_A Protein STN1; OB fold; 93.9 0.45 1.5E-05 45.5 11.4 85 48-132 86-185 (220)
76 2k75_A Uncharacterized protein 93.7 0.51 1.8E-05 39.8 10.4 89 30-139 4-99 (106)
77 1ynx_A Replication factor-A pr 93.1 0.11 3.8E-06 44.4 5.3 94 30-133 5-110 (114)
78 2du3_A O-phosphoseryl-tRNA syn 92.8 0.066 2.3E-06 57.8 4.0 49 323-371 207-257 (534)
79 2du7_A O-phosphoseryl-tRNA syn 91.1 0.14 4.8E-06 55.4 4.2 49 323-371 219-269 (549)
80 2odr_B Phosphoseryl-tRNA synth 90.8 0.16 5.4E-06 55.7 4.3 50 322-371 225-276 (648)
81 2odr_A Phosphoseryl-tRNA synth 90.8 0.16 5.5E-06 55.7 4.3 50 322-371 225-276 (665)
82 2odr_D Phosphoseryl-tRNA synth 90.7 0.17 5.6E-06 55.7 4.3 50 322-371 225-276 (685)
83 2odr_C Phosphoseryl-tRNA synth 90.5 0.18 6E-06 55.7 4.3 50 322-371 225-276 (701)
84 3kdf_A Replication protein A 1 89.8 2.4 8.2E-05 36.8 10.2 71 44-131 19-89 (121)
85 3fhw_A Primosomal replication 89.4 0.92 3.2E-05 39.1 7.2 52 81-133 49-100 (115)
86 1jmc_A Protein (replication pr 88.7 0.71 2.4E-05 44.2 6.7 96 28-133 7-114 (246)
87 3l4g_B Phenylalanyl-tRNA synth 88.4 1.5 5.2E-05 47.8 9.8 47 323-370 473-521 (589)
88 2rhq_B Phenylalanyl-tRNA synth 88.3 2.1 7.2E-05 48.4 11.1 47 323-371 573-632 (795)
89 3au7_A TIAS, putative uncharac 88.2 3.2 0.00011 43.1 11.6 76 46-132 283-362 (402)
90 2hpi_A DNA polymerase III alph 87.9 0.55 1.9E-05 55.4 6.2 81 45-132 1040-1124(1220)
91 1j6q_A Cytochrome C maturation 87.9 7 0.00024 34.6 11.9 82 44-141 29-114 (136)
92 4gop_A Putative uncharacterize 86.5 3.3 0.00011 35.5 8.8 56 44-111 15-70 (114)
93 1sr3_A APO-CCME; OB fold, beta 85.3 5.4 0.00019 35.3 9.8 79 44-138 25-106 (136)
94 3ig2_A Phenylalanyl-tRNA synth 84.5 2.2 7.5E-05 40.2 7.4 27 170-196 7-33 (213)
95 2pi2_E Replication protein A 1 84.1 13 0.00045 33.0 11.9 81 27-131 30-110 (142)
96 3ica_A Phenylalanyl-tRNA synth 83.0 4.1 0.00014 38.2 8.7 27 170-196 7-33 (213)
97 3mxn_B RECQ-mediated genome in 82.8 6.1 0.00021 35.3 9.0 73 47-131 58-130 (150)
98 3vdy_A SSB, single-stranded DN 81.9 4.4 0.00015 34.3 7.7 52 81-132 52-109 (116)
99 3k8a_A Putative primosomal rep 80.5 2.9 9.9E-05 35.1 5.9 48 81-130 55-102 (103)
100 4gop_C Putative uncharacterize 80.3 1.9 6.5E-05 45.2 5.8 83 48-132 14-108 (444)
101 1txy_A Primosomal replication 79.9 4.2 0.00014 33.9 6.7 50 81-131 50-102 (104)
102 3tqy_A Single-stranded DNA-bin 78.2 7.3 0.00025 35.1 8.2 85 48-132 9-115 (158)
103 1fyj_A Multifunctional aminoac 72.4 5.3 0.00018 29.8 4.7 43 234-276 4-46 (57)
104 1b7y_B Phers, protein (phenyla 70.1 15 0.0005 41.5 9.8 28 169-196 491-518 (785)
105 1z9f_A Single-strand binding p 69.1 14 0.00046 33.2 7.6 52 81-132 65-122 (153)
106 1wjj_A Hypothetical protein F2 65.1 23 0.00079 31.5 8.2 87 30-132 17-120 (145)
107 3koj_A Uncharacterized protein 64.5 51 0.0018 27.6 9.9 78 48-127 12-107 (108)
108 2kct_A Cytochrome C-type bioge 64.0 60 0.0021 26.7 10.7 76 44-133 5-86 (94)
109 1se8_A Single-strand binding p 63.8 22 0.00077 35.3 8.7 82 49-131 131-233 (301)
110 2djv_A Methionyl-tRNA syntheta 62.9 12 0.00041 29.9 5.3 51 227-277 10-60 (79)
111 3f2b_A DNA-directed DNA polyme 62.8 28 0.00096 40.4 10.3 90 30-131 8-103 (1041)
112 2fxq_A Single-strand binding p 62.5 19 0.00064 34.9 7.7 81 48-131 129-229 (264)
113 4gs3_A Single-stranded DNA-bin 62.0 53 0.0018 27.6 9.4 81 47-131 11-107 (107)
114 1v1q_A Primosomal replication 61.8 30 0.001 30.3 8.2 52 81-132 67-120 (134)
115 3ulp_A Single-strand binding p 59.7 35 0.0012 29.0 8.2 51 81-131 56-119 (124)
116 2fxq_A Single-strand binding p 58.8 36 0.0012 32.8 9.1 52 81-132 54-110 (264)
117 2vw9_A Single-stranded DNA bin 57.0 8.7 0.0003 33.5 3.8 52 81-132 51-108 (134)
118 3en2_A Probable primosomal rep 55.3 22 0.00077 29.6 5.9 46 81-127 50-95 (101)
119 3f1z_A Putative nucleic acid-b 54.1 61 0.0021 26.8 8.1 70 43-112 45-119 (133)
120 3eiv_A Single-stranded DNA-bin 52.4 68 0.0023 29.9 9.4 48 81-128 55-108 (199)
121 1d2d_A TRNA synthetase, tRNA l 50.2 14 0.00048 27.8 3.5 37 238-274 5-41 (59)
122 3ull_A DNA binding protein; DN 43.0 26 0.00088 30.2 4.6 52 81-132 69-127 (132)
123 1xjv_A Protection of telomeres 42.9 1.1E+02 0.0038 29.7 9.8 65 46-111 14-83 (294)
124 2k52_A Uncharacterized protein 42.6 65 0.0022 24.9 6.6 49 46-105 5-55 (80)
125 3afp_A Single-stranded DNA-bin 41.9 97 0.0033 27.8 8.5 46 81-126 55-106 (168)
126 3pgz_A Single-stranded DNA-bin 40.8 31 0.0011 32.1 5.1 84 48-131 27-137 (193)
127 4dam_A Single-stranded DNA-bin 38.7 44 0.0015 28.8 5.4 80 48-127 16-116 (128)
128 1gm5_A RECG; helicase, replica 38.3 20 0.0007 40.2 4.0 80 45-129 163-246 (780)
129 2k4k_A GSP13, general stress p 37.0 79 0.0027 27.0 6.8 49 46-105 7-61 (130)
130 3lgj_A Single-stranded DNA-bin 34.4 39 0.0013 30.7 4.5 83 48-132 24-135 (169)
131 1qvc_A Single stranded DNA bin 34.2 23 0.0008 31.1 2.9 84 48-132 6-115 (145)
132 2zt5_A Glycyl-tRNA synthetase; 29.9 14 0.00049 41.0 0.9 49 231-279 9-57 (693)
133 3kf6_B Protein TEN1; OB fold, 29.6 2.5E+02 0.0085 23.5 10.0 79 26-131 6-86 (105)
134 2khi_A 30S ribosomal protein S 29.2 86 0.003 26.1 5.6 50 45-105 29-85 (115)
135 1se8_A Single-strand binding p 28.5 36 0.0012 33.7 3.5 51 81-131 54-111 (301)
136 2eqs_A ATP-dependent RNA helic 26.7 1.2E+02 0.0041 24.6 6.0 53 45-105 11-70 (103)
137 1kl9_A Eukaryotic translation 26.7 1E+02 0.0035 28.1 6.0 51 46-105 15-71 (182)
138 2a19_A EIF-2- alpha, eukaryoti 26.0 1.2E+02 0.004 27.5 6.2 51 46-105 15-71 (175)
139 4dka_C RNA-editing complex pro 25.8 2.8E+02 0.0096 23.2 7.8 67 46-112 2-77 (105)
140 2khj_A 30S ribosomal protein S 25.6 63 0.0021 26.6 4.0 50 45-105 30-85 (109)
141 2b29_A Replication protein A 7 24.2 2.2E+02 0.0076 24.2 7.3 60 69-132 46-108 (123)
142 1qzg_A Protection of telomeres 23.2 4.4E+02 0.015 24.2 13.5 80 30-114 30-119 (187)
143 3hy0_A Alanyl-tRNA synthetase; 21.9 1.6E+02 0.0056 30.7 7.0 47 321-368 58-114 (441)
144 1yfs_A Alanyl-tRNA synthetase; 21.5 1.8E+02 0.0061 30.6 7.2 48 321-369 59-116 (465)
145 2vl6_A SSO MCM N-TER, minichro 21.2 2E+02 0.0068 27.4 7.2 19 94-112 223-241 (268)
No 1
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=6.1e-81 Score=662.53 Aligned_cols=360 Identities=27% Similarity=0.451 Sum_probs=318.3
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCCCcE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTC 101 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~gs~ 101 (507)
.+++++++|. .+..|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+.|+.||+
T Consensus 2 ~rt~~~~~l~------~~~~g~~V~v~Gwv~~~R~~g--~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEIT------EELNGQKVKVAGWVWEVKDLG--GIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSEDV 71 (438)
T ss_dssp CCSCCGGGCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGGCCTTCE
T ss_pred ceEEEHHHcc------hhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhcCCCCCE
Confidence 3567888875 356799999999999999999 8999999999985 9999997642 23457999999
Q ss_pred EEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCC---CChhhhccccccccCcHHHHHHHHHHHHHHHHHHH
Q 010544 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHT 178 (507)
Q Consensus 102 V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~---~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~ 178 (507)
|.|+|+|++++. ..|++||+++++++||+|. .++|++.+. ++.|+++++||||+|++.++++|++||.|++++|+
T Consensus 72 V~V~G~v~~~~~-~~~~~el~~~~i~vl~~~~-~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~ 149 (438)
T 3nem_A 72 VAVEGVVNFTPK-AKLGFEILPEKIVVLNRAE-TPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRD 149 (438)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEECBC-SSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCC-CCCcEEEEEEEEEEEecCC-CCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 4679999999999999996 578887543 78899999999999999999999999999999999
Q ss_pred HHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhh
Q 010544 179 FLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREA 258 (507)
Q Consensus 179 fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 258 (507)
||.++||+||+||+|++++|||+++.|++.
T Consensus 150 f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~-------------------------------------------------- 179 (438)
T 3nem_A 150 FFHENGFIEIHTPKIIATATEGGTELFPMK-------------------------------------------------- 179 (438)
T ss_dssp HHHHTTCEECCCCSEESSCSSCSSSCCEEE--------------------------------------------------
T ss_pred HHHHCCcEEEeCCEEecCCCCCCccceeEe--------------------------------------------------
Confidence 999999999999999999999999976542
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHh-hccCcEEEEeeccccCCCC
Q 010544 259 ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEHSH 337 (507)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~-~g~~rVfeI~p~FRaE~~~ 337 (507)
||++++||+||||||||+++ +|++||||||||||||+++
T Consensus 180 ----------------------------------------~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~ 219 (438)
T 3nem_A 180 ----------------------------------------YFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHN 219 (438)
T ss_dssp ----------------------------------------ETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSC
T ss_pred ----------------------------------------eCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCC
Confidence 57889999999999999874 8899999999999999999
Q ss_pred CCCCccccccccccccCCC-HHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHH
Q 010544 338 TSRHLAEFWMVEPEMAFSD-LKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVE 416 (507)
Q Consensus 338 t~rHl~EFtmLE~E~af~d-~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~ 416 (507)
++||+||||||||||+|+| ++|+|+++|+||+++++.+.+++..++++++..++ .++.||+||||.||++
T Consensus 220 t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~---------~~~~pf~rity~eai~ 290 (438)
T 3nem_A 220 TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---------EPKLPFPRVSYDKALE 290 (438)
T ss_dssp CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC---------CCCSSCCEEEHHHHHH
T ss_pred CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc---------cCCCCceEEEHHHHHH
Confidence 9999999999999999999 99999999999999999999888777777665431 3567999999999999
Q ss_pred HHHhhhhcCCccccccccccccchHHHHHHHHHHc----CCCeEEEecCCCCccceeee-cCCcCeEEEEEEEcCCceEE
Q 010544 417 LLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKF----QKPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVTCF 491 (507)
Q Consensus 417 ~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~----~~P~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~pgg~EI 491 (507)
+++.. | ...+||.|+++++|++|++.+. ++|+||+|||++++|||++. ++||++++|||||+| |+||
T Consensus 291 ~l~~~---g----~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~-G~Ei 362 (438)
T 3nem_A 291 ILGDL---G----KEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYR-GVEI 362 (438)
T ss_dssp HHHHT---T----CCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEET-TEEE
T ss_pred HHHHc---C----CCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEEC-CEEE
Confidence 98753 3 3456899999999999998763 78999999999999998765 457899999999997 5899
Q ss_pred eccccccccccccc
Q 010544 492 FKKFQALDWLLYFI 505 (507)
Q Consensus 492 ~~GsqRe~~~~~l~ 505 (507)
+||++|++|++++.
T Consensus 363 ~nG~~el~d~~~l~ 376 (438)
T 3nem_A 363 SSGGQREHRHDILV 376 (438)
T ss_dssp EEEEEBCCCHHHHH
T ss_pred EeCeeecCCHHHHH
Confidence 99999999998764
No 2
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=7e-81 Score=665.08 Aligned_cols=365 Identities=23% Similarity=0.379 Sum_probs=305.3
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-h-h-cccCCCCcEEE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-D-L-GQLVPTGTCVY 103 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~-~-~~~L~~gs~V~ 103 (507)
..|++|+++. ++.|++|+|+|||+++|.+|| +++|++|||++|. ||||++++.. . + ...|+.||+|.
T Consensus 17 ~~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~l~~g~~V~ 86 (456)
T 3m4p_A 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARK-TLIFVELRDGSGY--CQCVIFGKELCEPEKVKLLTRECSLE 86 (456)
T ss_dssp CCCEECCSTT-------CCCSSEEEEEEEEEEEECCSS-SEEEEEEECSSCE--EEEEEESTTTTCHHHHTTCCTTCEEE
T ss_pred ceEEEhhhhh-------hcCCCEEEEEEEEEEEecCCC-ceEEEEEEeCCcc--EEEEEecccchhhHHhhcCCCccEEE
Confidence 4568888884 568999999999999999985 6999999999985 9999987431 1 1 24689999999
Q ss_pred EEEEEeCCCCC--Cc-----ceeEEEEeEEEEeeCCCCCCCC-CCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHH
Q 010544 104 VEGMLKNPPEG--TK-----QKIELRVQKVVDVGMVDPAKYP-IPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYA 175 (507)
Q Consensus 104 V~G~v~~~~~g--~~-----~~~El~v~~i~vls~a~~~~~P-l~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~ 175 (507)
|+|+|++++.+ +. |++||+++++++||+|. .+.| ...+.++.|+++++||||+|++.++++|++||.|+++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~-~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~ 165 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESP-IDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWY 165 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCC-GGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCC-CCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHH
Confidence 99999988743 12 89999999999999985 1122 1123568899999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccc
Q 010544 176 THTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAG 255 (507)
Q Consensus 176 ~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 255 (507)
+|+||.++||+||+||+|++++||||++.|.+
T Consensus 166 iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------------------------ 197 (456)
T 3m4p_A 166 FRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------------------------ 197 (456)
T ss_dssp HHHHHHHTTCEECCCCSEEC------CCCCEE------------------------------------------------
T ss_pred HHHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------------------------
Confidence 99999999999999999999999999886543
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCC
Q 010544 256 REAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEH 335 (507)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~ 335 (507)
+||++++||+||||||||++++|++||||||||||||+
T Consensus 198 ------------------------------------------~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~ 235 (456)
T 3m4p_A 198 ------------------------------------------QYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQ 235 (456)
T ss_dssp ------------------------------------------EETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCS
T ss_pred ------------------------------------------cccCCCcccccCHHHHHHHHHhccCcEEEEEhheecCC
Confidence 47999999999999999998889999999999999999
Q ss_pred CCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHH
Q 010544 336 SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAV 415 (507)
Q Consensus 336 ~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi 415 (507)
++++|||||||||||||+|+|++|+|+++|+||+++++.+.+++...+..++..+ ..+..||+||||.||+
T Consensus 236 ~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~---------~~~~~pf~rity~eAi 306 (456)
T 3m4p_A 236 SRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHL---------KLPTRPFKRMTYADAI 306 (456)
T ss_dssp CCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC---------CCCCSSCEEEEHHHHH
T ss_pred CCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCccc---------ccCCCCCeEeeHHHHH
Confidence 9999999999999999999999999999999999999999887654333332211 1256799999999999
Q ss_pred HHHHhhhhcCCccc-cccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeee-cCCcCeEEEEEEEcCCceEEec
Q 010544 416 ELLEVAVKEGKHFE-NKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVTCFFK 493 (507)
Q Consensus 416 ~~l~~~~~~~~~~~-~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~pgg~EI~~ 493 (507)
+++++. +.+.. ....||.++..++|++|++. +++|+||+|||++++||||+. ++||++++|||||+||.+||+|
T Consensus 307 ~~l~~~---g~~~~~~~~~~g~~l~~~~e~~l~~~-~~~P~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gEi~~ 382 (456)
T 3m4p_A 307 KYCNDH---GILNKDKPFEYGEDISEKPERQMTDE-IGCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVG 382 (456)
T ss_dssp HHHHHH---TCCSSSSCCCTTCCCCHHHHHHHHHH-HTSCEEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEEEEE
T ss_pred HHHHHc---CCCccccCcchHHHHHHHHHHHHHHH-hCceEEEECCCchhCccccccCCCCCCeeEEEEEEeCCceEEcc
Confidence 998765 21111 34579999999999999986 589999999999999998764 5678899999999986579999
Q ss_pred cccccccccccc
Q 010544 494 KFQALDWLLYFI 505 (507)
Q Consensus 494 GsqRe~~~~~l~ 505 (507)
||+|++||++|.
T Consensus 383 G~~r~~d~~~l~ 394 (456)
T 3m4p_A 383 GSMRIWNYDELM 394 (456)
T ss_dssp EEEBCCCHHHHH
T ss_pred ceeecCCHHHHH
Confidence 999999998874
No 3
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=3.4e-78 Score=642.21 Aligned_cols=364 Identities=29% Similarity=0.442 Sum_probs=303.6
Q ss_pred ehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch-h-cccCCCCcEEEEEEEE
Q 010544 31 LIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD-L-GQLVPTGTCVYVEGML 108 (507)
Q Consensus 31 ~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~-~~~L~~gs~V~V~G~v 108 (507)
+|+++. ++.|++|+|+|||+++|.+|| +++|++|||++|. ||||++++... + ...|+.||+|.|+|+|
T Consensus 2 ~i~~~~-------~~~~~~V~v~Gwv~~~R~~Gk-~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v 71 (435)
T 2xgt_A 2 KIRDLV-------KHRNERVCIKGWIHRMRRQGK-SLMFFILRDGTGF--LQVLLMDKLCQTYDALTVNTECTVEIYGAI 71 (435)
T ss_dssp CGGGGG-------GGTTSEEEEEEEEEEEEECTT-SEEEEEEECSSCE--EEEEEEGGGGSSHHHHHCCTTCEEEEEEEE
T ss_pred chhhhh-------hcCCCEEEEEEEEEEecccCC-CcEEEEEEECCce--EEEEECCcchhHHHHhcCCCCCEEEEEEEE
Confidence 567774 467999999999999999985 6999999999986 99999854321 2 1258999999999999
Q ss_pred eCCCCC--CcceeEEEEeEEEEeeCCCC-CCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 010544 109 KNPPEG--TKQKIELRVQKVVDVGMVDP-AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 185 (507)
Q Consensus 109 ~~~~~g--~~~~~El~v~~i~vls~a~~-~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f 185 (507)
++++.+ ++|++||+++++++|+++.+ ..+|++++.++.|+++++||||+|++.++++|++||.|++++|+||.++||
T Consensus 72 ~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~gF 151 (435)
T 2xgt_A 72 KEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGY 151 (435)
T ss_dssp EECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 997632 35799999999999998532 246778888899999999999999999999999999999999999999999
Q ss_pred EEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHH
Q 010544 186 LYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTE 265 (507)
Q Consensus 186 ~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (507)
+||+||+|++++||||++.|.+
T Consensus 152 lEVeTPiL~~s~~eG~~~~F~~---------------------------------------------------------- 173 (435)
T 2xgt_A 152 VEVAPPTLVQTQVEGGSTLFNL---------------------------------------------------------- 173 (435)
T ss_dssp EECCCCSEESCCSSCTTSCCEE----------------------------------------------------------
T ss_pred EEEECCeEeeccCCCchhceee----------------------------------------------------------
Confidence 9999999999999999886644
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCcccc
Q 010544 266 LTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLAEF 345 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~EF 345 (507)
+||++++||+||||||||++++|++||||||||||||+++++||+|||
T Consensus 174 --------------------------------~~~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EF 221 (435)
T 2xgt_A 174 --------------------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEY 221 (435)
T ss_dssp --------------------------------EETTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEE
T ss_pred --------------------------------ccCCcccccCCChHHHHHHhhhccCceEEEecceecCCCCccccccce
Confidence 368899999999999999988899999999999999999899999999
Q ss_pred ccccccccCCCHHHHHHHHHHHHHHHHHHhhccccc--chhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhh
Q 010544 346 WMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFD--DMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVK 423 (507)
Q Consensus 346 tmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~--~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~ 423 (507)
|||||||+|+|++|+|+++|+||+++++.+.+.+.. .++.++..+ ..+..||+||||.||++++.+...
T Consensus 222 T~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~pf~rity~ea~~~~~~~~~ 292 (435)
T 2xgt_A 222 AHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKF---------QPPERPFLRMEYKDAIKWLQEHNV 292 (435)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTC---------CCCCSSCEEEEHHHHHHHHHHTTC
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhhhhhccccc---------cccCCCceEEEHHHHHHHHHhcCC
Confidence 999999999999999999999999999998775421 111111111 023479999999999999876421
Q ss_pred cCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeec-CCcCeEEEEEEEcCCceEEecccccccccc
Q 010544 424 EGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLN-DDLKTVAAMDVLVPKVTCFFKKFQALDWLL 502 (507)
Q Consensus 424 ~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~-~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~ 502 (507)
. ........||.++..++|++|.+.+ .+|+||+|||.+++||||+.+ +||++++|||||+||++||+|||+|+||++
T Consensus 293 ~-~~~~~~~~~g~~l~~~~e~~l~~~~-~~p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~~r~~d~~ 370 (435)
T 2xgt_A 293 E-NEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFD 370 (435)
T ss_dssp B-CTTSCBCCTTSCCCHHHHHHHHHHH-TSCEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEEEBCCCHH
T ss_pred C-cccccccchhhHHHHHHHHHHHHhc-CCcEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeeeEEeCCHH
Confidence 1 1111235788999999999998864 789999999999999987654 578899999999986579999999999998
Q ss_pred ccc
Q 010544 503 YFI 505 (507)
Q Consensus 503 ~l~ 505 (507)
++.
T Consensus 371 ~q~ 373 (435)
T 2xgt_A 371 ELS 373 (435)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 4
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-75 Score=620.80 Aligned_cols=358 Identities=25% Similarity=0.393 Sum_probs=314.8
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc--hhcccCCCCcEEEEE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVYVE 105 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~--~~~~~L~~gs~V~V~ 105 (507)
+++++++|. .++.|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+.|+.||+|.|+
T Consensus 3 ~~~~~~~l~------~~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVT------PEYDGKEVIWAGWVHLLRDLG--GKKFIILRDKTGL--GQVVVDKNSSAFGISQELTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCC------GGGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEEE
T ss_pred eEEEHHHhh------HHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChHHHHHHHhCCCCCEEEEE
Confidence 456676665 356899999999999999999 8999999999986 9999987532 223579999999999
Q ss_pred EEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCC---CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHh
Q 010544 106 GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK---LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQK 182 (507)
Q Consensus 106 G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~---~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~ 182 (507)
|+|++++. ++|++||+++++++||+|. .++|++.+. ++.|+++++||||+|++.+++++++||.|++++|+||.+
T Consensus 73 G~v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~ 150 (429)
T 1wyd_A 73 GIVKADKR-APRGIELHAEEITLLSKAK-APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYK 150 (429)
T ss_dssp EEEEECSS-SGGGEEEEEEEEEEEECCC-SSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCC-CCccEEEEEeEEEEeccCC-CCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999985 4689999999999999985 578887665 789999999999999999999999999999999999999
Q ss_pred CCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhh
Q 010544 183 QGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISAS 262 (507)
Q Consensus 183 ~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 262 (507)
+||+||+||+|+++++||++++|.+
T Consensus 151 ~gF~eV~TP~l~~~~~e~~~~~f~~------------------------------------------------------- 175 (429)
T 1wyd_A 151 EGFIEIFTPKIIASATEGGAQLFPV------------------------------------------------------- 175 (429)
T ss_dssp TTCEECCCCSEESSCSSTTCCCCEE-------------------------------------------------------
T ss_pred CCCEEEECCEEEeeCCCCCceeEEE-------------------------------------------------------
Confidence 9999999999999999999997654
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCc
Q 010544 263 VTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHL 342 (507)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl 342 (507)
+||++++||+||||+|||++++|++|||+||||||+|+++++||+
T Consensus 176 -----------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~ 220 (429)
T 1wyd_A 176 -----------------------------------IYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHL 220 (429)
T ss_dssp -----------------------------------EETTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCC
T ss_pred -----------------------------------ecCCceEEecCCcHHHHHHHHhCcCceEEEcccccccCCcccccc
Confidence 267888999999999999988899999999999999999889999
Q ss_pred cccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhh
Q 010544 343 AEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAV 422 (507)
Q Consensus 343 ~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~ 422 (507)
|||||||+|++|.+++|+|+++|+|++++++.+.+++..++++++..++ .++.||+||||.||++++.+.
T Consensus 221 pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~---------~l~~pf~rity~eA~~~~~~~- 290 (429)
T 1wyd_A 221 AEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKIPIKRLKYTEAIEILRSK- 290 (429)
T ss_dssp SEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCC---------CCCSSCEEEEHHHHHHHHHHS-
T ss_pred ceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccccc---------cCCCCccEEEHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999888777777665432 135799999999999999653
Q ss_pred hcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeee-cCCcCeEEEEEEEcCCceEEeccccccccc
Q 010544 423 KEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVTCFFKKFQALDWL 501 (507)
Q Consensus 423 ~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~ 501 (507)
+ ....||.+++.++|++|++.+..+|+||+|||..++|||++. +++|++++|||||+| |.||+|||+|+||+
T Consensus 291 --g----~~~~~~~~l~~~~e~~l~~~~~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~-G~Ei~~G~~r~~d~ 363 (429)
T 1wyd_A 291 --G----YNIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYK-FLEIVSGSTRNHKR 363 (429)
T ss_dssp --S----CCCCTTSCCCHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEET-TEEEEEEEEBCCCH
T ss_pred --C----CCcccCcccCcHHHHHHHHHhccCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEEC-CEEEEeCeeeeCCH
Confidence 2 235688899999999999876557999999999999998765 456789999999997 56999999999999
Q ss_pred ccc
Q 010544 502 LYF 504 (507)
Q Consensus 502 ~~l 504 (507)
+.+
T Consensus 364 ~~q 366 (429)
T 1wyd_A 364 EVL 366 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 5
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=5.5e-76 Score=635.60 Aligned_cols=363 Identities=26% Similarity=0.398 Sum_probs=293.2
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCc------chhcccCCCCcE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDV------ADLGQLVPTGTC 101 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~------~~~~~~L~~gs~ 101 (507)
.+++|++|. ..+.|++|+|+|||+++|.+| |++|++|||++| .||+|++++. ..+.+.|+.||+
T Consensus 49 ~~~~i~~l~------~~~~g~~V~v~Gwv~~~R~~g--kl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~l~~es~ 118 (548)
T 3i7f_A 49 KYTEIEELV------PAMAEKTVTIRARVQAVRGKG--NMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQKISAESI 118 (548)
T ss_dssp CBCCGGGCS------GGGTTCEEEEEEEEEEEEECS--SEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHTCCTTEE
T ss_pred ceEEhhhcc------hhcCCCEEEEEEEEEEEecCC--CeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhCCCCCCE
Confidence 356666664 467899999999999999999 899999999998 4999998732 124567999999
Q ss_pred EEEEEEEeCCCCC----CcceeEEEEeEEEEeeCCCCCCCCCCCC-----------------------------------
Q 010544 102 VYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKT----------------------------------- 142 (507)
Q Consensus 102 V~V~G~v~~~~~g----~~~~~El~v~~i~vls~a~~~~~Pl~~~----------------------------------- 142 (507)
|.|+|+|++++.+ ++|++||++++|+|||+|. .++|++.+
T Consensus 119 V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (548)
T 3i7f_A 119 CDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAE-YPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDL 197 (548)
T ss_dssp EEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCC-BSCSSCSGGGSCCHHHHHHHHHHTTCC----------------
T ss_pred EEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCC-CCCCCCchhcccccccccccccccccccccccccccccccccc
Confidence 9999999998642 3589999999999999986 56777621
Q ss_pred -----------------------CCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCC
Q 010544 143 -----------------------KLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCE 199 (507)
Q Consensus 143 -----------------------~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~e 199 (507)
..+.++..++|||++|++.++++|++||.|++++|+||.++||+||+||+|++++||
T Consensus 198 ~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~e 277 (548)
T 3i7f_A 198 TKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSE 277 (548)
T ss_dssp ---------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC-----
T ss_pred ccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCC
Confidence 235566778999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhh
Q 010544 200 GAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEER 279 (507)
Q Consensus 200 ga~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (507)
|+++.|.|
T Consensus 278 gga~~F~v------------------------------------------------------------------------ 285 (548)
T 3i7f_A 278 GGSNIFEV------------------------------------------------------------------------ 285 (548)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceeEE------------------------------------------------------------------------
Confidence 88886644
Q ss_pred hccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccCCCCCCCCccccccccccccCC-CH
Q 010544 280 SKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DL 357 (507)
Q Consensus 280 ~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~-d~ 357 (507)
+||++++||+||||||||++ ++|++||||||||||||+++|+|||||||||||||+|. ++
T Consensus 286 ------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 286 ------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp ------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCT
T ss_pred ------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCH
Confidence 25778899999999999976 57899999999999999999999999999999999998 69
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccc
Q 010544 358 KDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGID 437 (507)
Q Consensus 358 ~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~d 437 (507)
+|+|+++|+||+++++.+.++|..+++.++..++...++ + .||+||||.||++++++. | ...+|+.|
T Consensus 348 ~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~-----~-~pf~rit~~eai~~l~~~---g----~~~~~~~d 414 (548)
T 3i7f_A 348 HECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLI-----Y-RPFLRLTYKEAIEMLRAS---G----ETIGDYDD 414 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCC-----C-CSCEEEEHHHHHHHHHHT---T----CCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCccccc-----c-CCcceeEHHHHHHHHHHc---C----CCCCCccc
Confidence 999999999999999999888877777665554322111 2 799999999999999754 3 23467889
Q ss_pred cchHHHHHHHHHH---cCCC-eEEEecCCCCccceeee-cCCcCeEEEEEEEcCCceEEeccccccccccccc
Q 010544 438 LASEHERYLTEVK---FQKP-VIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 438 l~~e~Er~L~e~~---~~~P-~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l~ 505 (507)
++.++|++|++.+ ++.| +||+|||++++||||+. ++||++++|||||++ |+||+||++|++|++++.
T Consensus 415 l~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~-G~Ei~nG~~rl~Dp~~~~ 486 (548)
T 3i7f_A 415 FTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVR-GQEITSGAQRIHDPEFLM 486 (548)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEECCCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEEC-CEEEeeCeeecCCHHHHH
Confidence 9999999888743 4555 56789999999999764 568899999999997 689999999999998763
No 6
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=7.9e-75 Score=613.72 Aligned_cols=348 Identities=26% Similarity=0.376 Sum_probs=263.0
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCC-CCcEEEEEEE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP-TGTCVYVEGM 107 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~-~gs~V~V~G~ 107 (507)
+++|++|. ++.|++|+|+|||+++|.+| |++|++|||++|. ||||+++ +.|+ .||+|.|+|+
T Consensus 2 ~~~~~~l~-------~~~~~~V~v~Gwv~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~------~~l~~~~~~v~v~G~ 64 (422)
T 1n9w_A 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLG--RIQFLLLRDRSGV--VQVVTGG------LKLPLPESALRVRGL 64 (422)
T ss_dssp BCCGGGGG-------GCTTSEEEEEEEEEEEEECS--SEEEEEEEETTEE--EEEEEES------CCCCCTTCEEEEEEE
T ss_pred eEEHHHHH-------hcCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEEc------cccCCCCCEEEEEEE
Confidence 46677775 46799999999999999999 8999999999986 9999986 3588 9999999999
Q ss_pred EeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCC----CChhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHhC
Q 010544 108 LKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTK----LTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQ 183 (507)
Q Consensus 108 v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~----~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~ 183 (507)
|.+++. ++|++||+++++++||+|. .++|++.+. ++.|+++++||||+|++.+++++++||.|++++|+||.++
T Consensus 65 v~~~~~-~~~~~el~~~~~~vl~~~~-~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 65 VVENAK-APGGLEVQAKEVEVLSPAL-EPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEECTT-STTSEEEEEEEEEEEECCC-SCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCC-CCccEEEEEeEEEEeccCC-cCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999985 4689999999999999985 578887665 7889999999999999999999999999999999999999
Q ss_pred CcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhh
Q 010544 184 GFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASV 263 (507)
Q Consensus 184 ~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 263 (507)
||+||+||+|+++++||++++|.+
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~-------------------------------------------------------- 166 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV-------------------------------------------------------- 166 (422)
T ss_dssp TCEECCCC------------------------------------------------------------------------
T ss_pred CCEEEECCEEEEeCCCCCceeEEE--------------------------------------------------------
Confidence 999999999999999999887643
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCCCCcc
Q 010544 264 TELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTSRHLA 343 (507)
Q Consensus 264 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~rHl~ 343 (507)
+|+++++||+||||+|+|++++|++|||+||||||+|+++++||+|
T Consensus 167 ----------------------------------~~~g~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~p 212 (422)
T 1n9w_A 167 ----------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLN 212 (422)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHSEEEEEEEC-------------
T ss_pred ----------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccc
Confidence 2567789999999999999888899999999999999998899999
Q ss_pred ccccccccccCC-CHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhh
Q 010544 344 EFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAV 422 (507)
Q Consensus 344 EFtmLE~E~af~-d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~ 422 (507)
||||||+|++|. |++|+|+++|+|++++++.+.+++..++++++..++ ....||+||||.||++.|++.
T Consensus 213 EFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~---------~~~~pf~rity~eA~~~~~~~- 282 (422)
T 1n9w_A 213 EYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP---------SFPQDIPRLTHAEAKRILKEE- 282 (422)
T ss_dssp CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC---------CCSSSCCEEEHHHHHHHHHHT-
T ss_pred eeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc---------ccCCCcceeEHHHHHHHHHhc-
Confidence 999999999999 999999999999999999999888777877665432 122699999999999999753
Q ss_pred hcCCccccccccccccchHHHHHHHHHHc----CCCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEecccccc
Q 010544 423 KEGKHFENKVEWGIDLASEHERYLTEVKF----QKPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQAL 498 (507)
Q Consensus 423 ~~~~~~~~~~~~g~dl~~e~Er~L~e~~~----~~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe 498 (507)
+ ...||.|+.+++|++|++.+. .+|+||+|||..++||||+.+++ ++++|||||+| |.||+|||+|+
T Consensus 283 --~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~~~~fDL~~~-G~Ei~~G~~r~ 353 (422)
T 1n9w_A 283 --L-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GTTRSFDLLFR-GLEITSGGQRI 353 (422)
T ss_dssp --S-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SBBSEEEEEET-TEEEEEEEEBC
T ss_pred --C-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CEEEEEEEEEC-CEEEEeCEeec
Confidence 2 256888999999999988653 27999999999999999988777 89999999997 56999999999
Q ss_pred cccccc
Q 010544 499 DWLLYF 504 (507)
Q Consensus 499 ~~~~~l 504 (507)
||++.+
T Consensus 354 ~d~~~q 359 (422)
T 1n9w_A 354 HRYEEL 359 (422)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 999875
No 7
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=2.2e-74 Score=622.02 Aligned_cols=367 Identities=18% Similarity=0.230 Sum_probs=296.4
Q ss_pred cccccceehhhhhc-CCCCCCC---CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcc
Q 010544 24 HQFSDRVLIKSILT-RPDGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQ 94 (507)
Q Consensus 24 ~~~~~r~~i~~i~~-~~~~~~~---~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~ 94 (507)
..|.+++++.++.. ..++... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G--k~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~~ 134 (529)
T 4ex5_A 59 NDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG--KASFATVQDGSGQ--IQFFVTPADVGAETYDAFK 134 (529)
T ss_dssp CCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEECSSCE--EEEEECHHHHCHHHHHHHH
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC--CeEEEEEEeCCee--EEEEEECCcCCHHHHHHHh
Confidence 35677888888874 2222111 1278999999999999999 8999999999985 9999987542 1235
Q ss_pred cCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHHH
Q 010544 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIRN 170 (507)
Q Consensus 95 ~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~rs 170 (507)
.|+.||+|.|+|+|.+++. |++||+++++++||+|. +|+|.+.++ .|.+.++|||++| ++.++++|++||
T Consensus 135 ~l~~gd~V~V~G~v~~t~~---gelel~~~~i~vLs~a~---~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs 208 (529)
T 4ex5_A 135 KWDLGDIVAARGVLFRTNK---GELSVKCTQLRLLAKAL---RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRART 208 (529)
T ss_dssp TCCTTCEEEEEEEEEECTT---SCEEEEEEEEEEEECCS---SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEEcCC---CcEEEEEEEEEEEecCC---CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 6999999999999999875 59999999999999984 677777654 4677789999997 799999999999
Q ss_pred HHHHHHHHHHHhCCcEEEccCeeecCCCCCCc-ccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhh
Q 010544 171 ALAYATHTFLQKQGFLYIHTPIITTSDCEGAG-EMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (507)
Q Consensus 171 ~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~-~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~ 249 (507)
.|++++|+||.++||+||+||+|+++ +|||+ ..|.+
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~-~gGA~a~pF~t------------------------------------------ 245 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPI-PGGAAAKPFVT------------------------------------------ 245 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-CCSSSSCCCEE------------------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecc-CCCCccccccc------------------------------------------
Confidence 99999999999999999999999976 66664 44422
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEe
Q 010544 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~ 328 (507)
| .++|+.++||+||||||||++ ++|++||||||
T Consensus 246 ---------------~-------------------------------~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg 279 (529)
T 4ex5_A 246 ---------------H-------------------------------HNALDMEMFLRIAPELYLKRLIVGGFERVFEIN 279 (529)
T ss_dssp ---------------E-------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEE
T ss_pred ---------------c-------------------------------cccCCcceecccCHHHHHHHHHhcCCCcEEEee
Confidence 1 125788999999999999976 68999999999
Q ss_pred eccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCcee
Q 010544 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (507)
Q Consensus 329 p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~r 408 (507)
||||||++ +.||||||||||||++|+|++|+|+++|+||+++++.+.+++ .+.+.+..+ .++.||+|
T Consensus 280 ~~FR~E~~-~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~i----------d~~~pf~R 346 (529)
T 4ex5_A 280 RNFRNEGV-SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTA--TIQYQGREL----------DLAQPFHR 346 (529)
T ss_dssp EEECCSCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCS--EEEETTEEE----------ETTSCCEE
T ss_pred hheecCCC-CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCcC--ceecCceee----------ccCCCceE
Confidence 99999999 579999999999999999999999999999999999998865 344443322 26789999
Q ss_pred eeHHHHHHHHHh-hhhc-------------CCcccccc----cccc-ccchHHHHHHHHHHcCCCeEEEecCCCCcccee
Q 010544 409 ITYTEAVELLEV-AVKE-------------GKHFENKV----EWGI-DLASEHERYLTEVKFQKPVIVYNYPKGIKAFYM 469 (507)
Q Consensus 409 ity~eAi~~l~~-~~~~-------------~~~~~~~~----~~g~-dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~ 469 (507)
|||.||++.+.+ .+.. ...++... +|+. ++..+++..+++..+.+|+||+|||++++||||
T Consensus 347 ity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE~~l~~P~FI~dyP~~~splak 426 (529)
T 4ex5_A 347 LTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAEAQLWEPTFIIDYPIEVSPLAR 426 (529)
T ss_dssp EEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTGGGCCSCEEEEEEEGGGCTTBC
T ss_pred EEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhccccCCCEEEECCchhhCCCcc
Confidence 999999999875 2100 00111122 3443 455555556666667899999999999999999
Q ss_pred eecCCcCeEEEEEEEcCCceEEeccccccccccc
Q 010544 470 RLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 470 ~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
.+++||++++|||||++ |+|||||++|++|++.
T Consensus 427 ~~~~~p~~~~rFeL~i~-G~EianG~~el~Dp~~ 459 (529)
T 4ex5_A 427 ESDTVAGITERFELFIT-GREIANGFSELNDPED 459 (529)
T ss_dssp BCSSSTTEEEEEEEEET-TEEEEEEEEBCCCHHH
T ss_pred cCCCCCCceEEEEEEEC-CEEEecchhccCCHHH
Confidence 88889999999999997 6799999999999774
No 8
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=7e-74 Score=608.69 Aligned_cols=361 Identities=33% Similarity=0.556 Sum_probs=316.7
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCCCcE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPTGTC 101 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~gs~ 101 (507)
+++++|++|.. ++.|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+.|+.||+
T Consensus 2 ~~~~~~~~l~~------~~~~~~V~v~G~v~~~R~~g--~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~l~~~~~ 71 (434)
T 1x54_A 2 IEKVYCQEVKP------ELDGKKVRLAGWVYTNMRVG--KKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKKLGRESS 71 (434)
T ss_dssp CCCCCGGGCCG------GGTTCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHTCCTTCE
T ss_pred ceEEEHHHhhH------HhCCCEEEEEEEEEEEecCC--CeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhcCCCCCE
Confidence 35678888862 56899999999999999999 8999999999986 9999975431 12357999999
Q ss_pred EEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCC--CCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHHH
Q 010544 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI--PKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTF 179 (507)
Q Consensus 102 V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl--~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~f 179 (507)
|.|+|+|++++. ++|++||+++++++||+| .++|+ +.+.++.|+++++||||+|++.+++++++||.|++++|+|
T Consensus 72 v~v~G~v~~~~~-~~~~~el~~~~~~vl~~~--~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~ 148 (434)
T 1x54_A 72 VIVEGIVKADER-APGGAEVHVEKLEVIQAV--SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREW 148 (434)
T ss_dssp EEEEEEEEECTT-SGGGEEEEEEEEEEEECC--SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCC-CCccEEEEEeEEEEeecC--CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999985 468999999999999998 46888 6666889999999999999999999999999999999999
Q ss_pred HHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhh
Q 010544 180 LQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAI 259 (507)
Q Consensus 180 l~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 259 (507)
|.++||+||+||+|+++++||++++|.+
T Consensus 149 f~~~gF~eVeTP~l~~~~~e~~~~~f~~---------------------------------------------------- 176 (434)
T 1x54_A 149 LLKDGWHEVFPPILVTGAVEGGATLFKL---------------------------------------------------- 176 (434)
T ss_dssp HHHTTCEECCCCSEESCCSSCGGGCCEE----------------------------------------------------
T ss_pred HHHCCCEEEeCcEEEeecCCCCceeEEE----------------------------------------------------
Confidence 9999999999999999999999887654
Q ss_pred hhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHHhhccCcEEEEeeccccCCCCCC
Q 010544 260 SASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETYACAVSNVYTFGPTFRAEHSHTS 339 (507)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l~~g~~rVfeI~p~FRaE~~~t~ 339 (507)
+||++.+||.||||+|+|++++|++|||+||||||+|+++++
T Consensus 177 --------------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~E~~~~~ 218 (434)
T 1x54_A 177 --------------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTR 218 (434)
T ss_dssp --------------------------------------EETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECCCCCCCS
T ss_pred --------------------------------------eecCCcEEeccChHHHHHHHhcCccceEEEecceecCCCCCc
Confidence 367888999999999999977889999999999999999889
Q ss_pred CCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHH
Q 010544 340 RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLE 419 (507)
Q Consensus 340 rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~ 419 (507)
||+|||||||+|++|.+++|+|+++|++++++++.+.++|..+|++++..++ .++ .++.||+|+||.||++++.
T Consensus 219 RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~-----~~~-~~~~pf~rity~ea~~~~~ 292 (434)
T 1x54_A 219 RHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLT-----TLK-NTEPPFPRISYDEAIDILQ 292 (434)
T ss_dssp SCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCH-----HHH-TCCSSCCEEEHHHHHHHHH
T ss_pred ccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcccc-----ccc-ccCCCCcEEEHHHHHHHHH
Confidence 9999999999999999999999999999999999999888778877765432 121 1467999999999999997
Q ss_pred hhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccceeee-cCCcCeEEEEEEEcC-CceEEeccccc
Q 010544 420 VAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRL-NDDLKTVAAMDVLVP-KVTCFFKKFQA 497 (507)
Q Consensus 420 ~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~-~~d~~~~~rFDLl~p-gg~EI~~GsqR 497 (507)
+. + ...+||.++..++|++|++.+ .+|+||+|||..++|||++. ++||.+++|||||++ |.|||+|||+|
T Consensus 293 ~~---g----~~~~~~~dl~~~~e~~l~~~~-~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r 364 (434)
T 1x54_A 293 SK---G----VNVEWGDDLGADEERVLTEEF-DRPFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQR 364 (434)
T ss_dssp HT---T----CCCCTTCCCCHHHHHHHHTTC-SSCEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEB
T ss_pred hc---C----CCcccCCccChHHHHHHHHHh-CCcEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEe
Confidence 53 2 235688899999999998854 67999999999999998765 457789999999998 66799999999
Q ss_pred ccccccc
Q 010544 498 LDWLLYF 504 (507)
Q Consensus 498 e~~~~~l 504 (507)
+||++.+
T Consensus 365 ~~d~~~q 371 (434)
T 1x54_A 365 EDDYDKL 371 (434)
T ss_dssp CCCHHHH
T ss_pred eCCHHHH
Confidence 9999865
No 9
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=3.4e-73 Score=614.69 Aligned_cols=376 Identities=16% Similarity=0.213 Sum_probs=299.2
Q ss_pred cccccceehhhhhc-CCCC--CCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc----hh---c
Q 010544 24 HQFSDRVLIKSILT-RPDG--GAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DL---G 93 (507)
Q Consensus 24 ~~~~~r~~i~~i~~-~~~~--~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~----~~---~ 93 (507)
..|..+++++++.. +.++ +....|++|+|+|||+++|.+|| |++|++|||++|. ||||++++.. .+ .
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gk-k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 105 (521)
T 3bju_A 29 HKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGG-KLIFYDLRGEGVK--LQVMANSRNYKSEEEFIHIN 105 (521)
T ss_dssp SCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSS-SEEEEEEEETTEE--EEEEEEGGGSSCHHHHHHHH
T ss_pred CcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCC-CcEEEEEEECCEE--EEEEEECCccCCHHHHHHHH
Confidence 45788899999863 2222 23446889999999999999997 7999999999974 9999987542 23 2
Q ss_pred ccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCC-CCChhhhccccccccC-cHHHHHHHHHHHH
Q 010544 94 QLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKT-KLTLEFLRDRIPFRPR-TNTIAAVARIRNA 171 (507)
Q Consensus 94 ~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~-~~~~e~~r~~~~l~~R-~~~~~~~~~~rs~ 171 (507)
+.|+.||+|.|+|+|.+++. |++||+++++++||+|. .++|.... ..+.|.+.++|||++| ++.++++|++||.
T Consensus 106 ~~l~~gd~V~V~G~v~~t~~---ge~ei~~~~i~~l~~~~-~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~ 181 (521)
T 3bju_A 106 NKLRRGDIIGVQGNPGKTKK---GELSIIPYEITLLSPCL-HMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSK 181 (521)
T ss_dssp HHCCTTCEEEEEEEEEECTT---CCEEEEEEEEEEEECCC-SCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEEEEEEecCC---CCEEEEEeEEEEeecCC-CCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHH
Confidence 46899999999999999974 59999999999999985 34554322 2467888889999999 7999999999999
Q ss_pred HHHHHHHHHHhCCcEEEccCeeecCCCCCC-cccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhh
Q 010544 172 LAYATHTFLQKQGFLYIHTPIITTSDCEGA-GEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLK 250 (507)
Q Consensus 172 i~~~~r~fl~~~~f~ev~TPil~~~~~ega-~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~ 250 (507)
|++++|+||.++||+||+||+|+++ +||| ++.|.+.
T Consensus 182 i~~~iR~f~~~~gF~EVeTPiL~~~-~gGa~a~~F~t~------------------------------------------ 218 (521)
T 3bju_A 182 IITYIRSFLDELGFLEIETPMMNII-PGGAVAKPFITY------------------------------------------ 218 (521)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESS-CCSSSCCCCEEE------------------------------------------
T ss_pred HHHHHHHHHHHCCCEEEeCceeecc-CCCccccceeee------------------------------------------
Confidence 9999999999999999999999987 5555 5655332
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEee
Q 010544 251 SDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGP 329 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p 329 (507)
.++|++++||+||||||||++ ++|++|||||||
T Consensus 219 ----------------------------------------------~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~ 252 (521)
T 3bju_A 219 ----------------------------------------------HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGR 252 (521)
T ss_dssp ----------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEE
T ss_pred ----------------------------------------------cccCCcceEeeCCHHHHHHHHHhcCcCceEEEEc
Confidence 125888999999999999976 578999999999
Q ss_pred ccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceee
Q 010544 330 TFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERI 409 (507)
Q Consensus 330 ~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~ri 409 (507)
|||||++++ |||||||||||||+|+|++|+|+++|+||+++++.+.+++ .+++.+...+. ..++..++.||+|+
T Consensus 253 ~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~~~~--~~~~~~~~~d~---~~~~~d~~~pf~ri 326 (521)
T 3bju_A 253 QFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSY--KVTYHPDGPEG---QAYDVDFTPPFRRI 326 (521)
T ss_dssp EECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSSS--EEEECTTCTTS---CCEEEECCSSCEEE
T ss_pred ceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHhCCc--eEEeccccccc---ccceeccCCCcccc
Confidence 999999955 9999999999999999999999999999999999998876 34443321111 11122367899999
Q ss_pred eHHHHHHHHHhhhhc-CCcc--------------------ccccccccccchHHHHHHHHHHcCCCeEEEecCCCCccce
Q 010544 410 TYTEAVELLEVAVKE-GKHF--------------------ENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY 468 (507)
Q Consensus 410 ty~eAi~~l~~~~~~-~~~~--------------------~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy 468 (507)
||.||++.+.+.+.. +.++ ....+||..+...+|+++.+. +.+|+||+|||..++|||
T Consensus 327 t~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~-l~~P~fI~dyP~~~spla 405 (521)
T 3bju_A 327 NMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVT-CINPTFICDHPQIMSPLA 405 (521)
T ss_dssp EHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGG-CCSCEEEECCBGGGCTTB
T ss_pred cHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEECCccccCccc
Confidence 999999998764210 0000 011234444445566666554 468999999999999999
Q ss_pred eeecCCcCeEEEEEEEcCCceEEeccccccccccc
Q 010544 469 MRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLY 503 (507)
Q Consensus 469 ~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~ 503 (507)
|.+++||++++|||||++ |+||+||++|++|++.
T Consensus 406 ~~~~~dp~~~~rfdL~i~-G~Ei~ng~~el~Dp~~ 439 (521)
T 3bju_A 406 KWHRSKEGLTERFELFVM-KKEICNAYTELNDPMR 439 (521)
T ss_dssp CBCSSSTTBBSEEEEEET-TEEEEEEEEBCCCHHH
T ss_pred ccCCCCCCeeeeEEEEEc-ceeeecChhhhCCHHH
Confidence 998889999999999997 6899999999999854
No 10
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=1.3e-72 Score=607.67 Aligned_cols=367 Identities=17% Similarity=0.241 Sum_probs=290.8
Q ss_pred ccccceehhhhhcC-CCCCCC---CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----h-hcc
Q 010544 25 QFSDRVLIKSILTR-PDGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----D-LGQ 94 (507)
Q Consensus 25 ~~~~r~~i~~i~~~-~~~~~~---~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~-~~~ 94 (507)
.|.+++++.++... .++... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. + ..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 113 (504)
T 1e1o_A 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG--KASFVTLQDVGGR--IQLYVARDSLPEGVYNDQFK 113 (504)
T ss_dssp CCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEETTTSSTTHHHHTGG
T ss_pred CCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEECCcCCHHHHHHHHh
Confidence 56788999999842 111100 0188999999999999999 8999999999985 9999987632 1 235
Q ss_pred cCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHHH
Q 010544 95 LVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIRN 170 (507)
Q Consensus 95 ~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~rs 170 (507)
.|+.||+|.|+|+|.++++ |++||+++++++||+|. .|+|.+.++ .|.+.++|||++| ++.++++|++||
T Consensus 114 ~l~~g~~V~V~G~v~~~~~---ge~ei~~~~i~vl~~a~---~plP~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs 187 (504)
T 1e1o_A 114 KWDLGDIIGARGTLFKTQT---GELSIHCTELRLLTKAL---RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRS 187 (504)
T ss_dssp GCCTTCEEEEEEEEEECTT---CCEEEEEEEEEEEECCS---SCCCC-------TTHHHHTHHHHHHHCHHHHHHHHHHH
T ss_pred cCCCCCEEEEEEEEEecCC---ceEEEEEEEEEEecccC---CCCCccccCCcChhhhhhccchhhhcCHHHHHHHHHHH
Confidence 6999999999999999875 59999999999999984 556666554 6677789999995 899999999999
Q ss_pred HHHHHHHHHHHhCCcEEEccCeeecCCCCCCc-ccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhh
Q 010544 171 ALAYATHTFLQKQGFLYIHTPIITTSDCEGAG-EMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKL 249 (507)
Q Consensus 171 ~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~-~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~ 249 (507)
.|++++|+||.++||+||+||+|+++ ++||+ +.|.+.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~-~~Ga~ar~F~t~----------------------------------------- 225 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVI-PGGASARPFITH----------------------------------------- 225 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESS-CCSSCCCCCEEE-----------------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEec-CCCCcccceEec-----------------------------------------
Confidence 99999999999999999999999976 66664 555442
Q ss_pred hccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEe
Q 010544 250 KSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFG 328 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~ 328 (507)
.++|++++||+||||||||++ ++|++||||||
T Consensus 226 -----------------------------------------------~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg 258 (504)
T 1e1o_A 226 -----------------------------------------------HNALDLDMYLRIAPELYLKRLVVGGFERVFEIN 258 (504)
T ss_dssp -----------------------------------------------ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEE
T ss_pred -----------------------------------------------cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEc
Confidence 125788999999999999986 57899999999
Q ss_pred eccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCcee
Q 010544 329 PTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFER 408 (507)
Q Consensus 329 p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~r 408 (507)
||||||++ +.||+||||||||||+|+|++|+|+++|+||+++++.+.+++. +.+.+..+ .++.||+|
T Consensus 259 ~~FR~E~~-~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~--i~~~~~~i----------~~~~pf~r 325 (504)
T 1e1o_A 259 RNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTK--VTYGEHVF----------DFGKPFEK 325 (504)
T ss_dssp EEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSE--EEETTEEE----------ETTSCCEE
T ss_pred ccccCCCC-CccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCce--eeeCCEee----------ccCCCceE
Confidence 99999999 4599999999999999999999999999999999999988763 55443322 15679999
Q ss_pred eeHHHHHHHHHh-hhhcC-Cccc----cccccccc---------cchHHHHHHHHHHcCCCeEEEecCCCCccceeeecC
Q 010544 409 ITYTEAVELLEV-AVKEG-KHFE----NKVEWGID---------LASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLND 473 (507)
Q Consensus 409 ity~eAi~~l~~-~~~~~-~~~~----~~~~~g~d---------l~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~ 473 (507)
|||.||++.+.+ .+... .+.+ ...++|.+ +-.+....+++..+.+|+||+|||..++||+|++++
T Consensus 326 ity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~p~fV~dyP~~~~pf~~~~~~ 405 (504)
T 1e1o_A 326 LTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDV 405 (504)
T ss_dssp EEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSS
T ss_pred EeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCCeEEEECCCcccCcCcCCCCC
Confidence 999999999975 32100 0000 00112222 222222234444567899999999999999998888
Q ss_pred CcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 474 DLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 474 d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
||++++|||||++ |.||+|||+|+||++.+
T Consensus 406 dp~~~~~fDL~i~-G~Ei~~G~~el~d~~~q 435 (504)
T 1e1o_A 406 NPEITDRFEFFIG-GREIGNGFSELNDAEDQ 435 (504)
T ss_dssp CTTBBSEEEEEET-TEEEEEEEEBCCCHHHH
T ss_pred CCCceEEEEEEEC-CeEEccceeeeCCHHHH
Confidence 9999999999997 66999999999998753
No 11
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=5.8e-72 Score=601.34 Aligned_cols=367 Identities=25% Similarity=0.379 Sum_probs=307.5
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCcee-EEEEEEcCCCCceEEEEEeCC----cc----hhcccCC
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSF-AFLEVNDGSCPANLQVIVDKD----VA----DLGQLVP 97 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl-~Fi~LrD~sg~~~IQvVv~~~----~~----~~~~~L~ 97 (507)
..+++|++|.. ....|++|+|+|||+++|.+| |+ +|++|||++|. ||||++++ .. .+.+.|+
T Consensus 21 ~~~~~~~~l~~-----~~~~g~~V~v~GwV~~~R~~g--~~l~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~~~~l~ 91 (487)
T 1eov_A 21 QKRVKFVDLDE-----AKDSDKEVLFRARVHNTRQQG--ATLAFLTLRQQASL--IQGLVKANKEGTISKNMVKWAGSLN 91 (487)
T ss_dssp CCCCCGGGCCT-----TTTTTCEEEEEEEEEEEEECS--SSEEEEEEEETTEE--EEEEEECCSSSSSCHHHHHHHTTCC
T ss_pred cceeEHHHhcc-----cccCCCEEEEEEEEEEeeccC--CccEEEEEEECCcc--EEEEEeccccccccHHHHHHHhcCC
Confidence 45567777752 126899999999999999999 55 99999999985 99999865 11 1345799
Q ss_pred CCcEEEEEEEEeCCCCC----CcceeEEEEeEEEEeeCCCCCCCCCCCC---------------CCChhhhccccccccC
Q 010544 98 TGTCVYVEGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPKT---------------KLTLEFLRDRIPFRPR 158 (507)
Q Consensus 98 ~gs~V~V~G~v~~~~~g----~~~~~El~v~~i~vls~a~~~~~Pl~~~---------------~~~~e~~r~~~~l~~R 158 (507)
.||+|.|+|+|.+++.+ ++|++||+++++++||+|. .++|++.+ ..+.|+++++||||+|
T Consensus 92 ~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~-~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr 170 (487)
T 1eov_A 92 LESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETP-EALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR 170 (487)
T ss_dssp TTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCC-SSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT
T ss_pred CCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeeccc-ccCCcchhhcccccccccccccccCChhhhhhcceeecC
Confidence 99999999999998742 3589999999999999996 46787432 2567888899999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHH
Q 010544 159 TNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLV 238 (507)
Q Consensus 159 ~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (507)
++.+++++++||.|++++|+||.++||+||+||+|+++++||++++|.+.
T Consensus 171 ~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~------------------------------ 220 (487)
T 1eov_A 171 TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVT------------------------------ 220 (487)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEE------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceec------------------------------
Confidence 99999999999999999999999999999999999999999888877652
Q ss_pred HHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-
Q 010544 239 IKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY- 317 (507)
Q Consensus 239 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l- 317 (507)
||++++||+||||||+|++
T Consensus 221 ------------------------------------------------------------~~~~~~~L~~Spql~~k~l~ 240 (487)
T 1eov_A 221 ------------------------------------------------------------YFKGKAYLAQSPQFNKQQLI 240 (487)
T ss_dssp ------------------------------------------------------------ETTEEEEECSCTHHHHHHHH
T ss_pred ------------------------------------------------------------cCCccEEcccChHHHHHHHH
Confidence 5788899999999999986
Q ss_pred hhccCcEEEEeeccccCCCCCCCCccccccccccccCC-CHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhh
Q 010544 318 ACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS-DLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCIN 396 (507)
Q Consensus 318 ~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~-d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~ 396 (507)
++|++||||||||||+|+++++||+|||||||||++|. +++|+|+++|+||+++++.+.+++..++..+...++...++
T Consensus 241 ~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~~~l~~~~~~~~~~~~~ 320 (487)
T 1eov_A 241 VADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFK 320 (487)
T ss_dssp HTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCC
T ss_pred hcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhchhHHHhhhhhcCCccee
Confidence 67899999999999999999999999999999999997 59999999999999999999888876676655544322222
Q ss_pred hhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHH---cC-CCeEEEecCCCCccce-eee
Q 010544 397 RLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVK---FQ-KPVIVYNYPKGIKAFY-MRL 471 (507)
Q Consensus 397 ~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~---~~-~P~fVtdyP~~~~Pfy-~~~ 471 (507)
. ....||++++|.||+++++.. + ....|+.++..++|+.|++.+ ++ .|+||+|||..++||| |.+
T Consensus 321 ~---~~~~~~~ri~~~ea~~~l~~~---g----~~~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~pfy~~~~ 390 (487)
T 1eov_A 321 L---PKDGKMVRLTYKEGIEMLRAA---G----KEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPD 390 (487)
T ss_dssp C---CTTCCCEEEEHHHHHHHHHHT---T----CCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSCTTBCBC
T ss_pred c---ccCCCeeEEEHHHHHHHHHHh---C----CCCCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccChhhcCcC
Confidence 1 123489999999999988653 2 224566788889999888643 33 4689999999999997 555
Q ss_pred cCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 472 NDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 472 ~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
++||++++|||||++ |+||+|||+|+||++.+
T Consensus 391 ~~dp~~~~~fDL~~~-G~Ei~~G~~rl~d~~~q 422 (487)
T 1eov_A 391 PANPKYSNSYDFFMR-GEEILSGAQRIHDHALL 422 (487)
T ss_dssp SSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHH
T ss_pred CCCCCeEEEEEEEeC-CEEEEeeEEecCCHHHH
Confidence 678889999999997 67999999999999865
No 12
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=3.6e-72 Score=603.06 Aligned_cols=366 Identities=18% Similarity=0.246 Sum_probs=292.8
Q ss_pred ccccceehhhhhcC-CCCCCC---CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhccc
Q 010544 25 QFSDRVLIKSILTR-PDGGAG---LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQL 95 (507)
Q Consensus 25 ~~~~r~~i~~i~~~-~~~~~~---~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~ 95 (507)
.|.+++++.++... .++... ..|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g--k~~F~~LrD~sg~--iQvv~~~~~~~~~~~~~~~~ 105 (493)
T 3a74_A 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG--KAGFAHIQDVTGQ--IQIYVRQDDVGEQQYELFKI 105 (493)
T ss_dssp CCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEEEETTEE--EEEEEEHHHHHHHHHHHHHH
T ss_pred CCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC--CcEEEEEEECCEe--EEEEEECCcCCHHHHHHHhc
Confidence 56788999999842 111100 0288999999999999999 8999999999985 9999986531 12356
Q ss_pred CCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCCCCCCCC---hhhhccccccccC-cHHHHHHHHHHHH
Q 010544 96 VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLT---LEFLRDRIPFRPR-TNTIAAVARIRNA 171 (507)
Q Consensus 96 L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~---~e~~r~~~~l~~R-~~~~~~~~~~rs~ 171 (507)
|+.||+|.|+|+|.++++ |++||+++++++||+|. .|+|.+.++ .|...++||||+| ++.++++|++||.
T Consensus 106 l~~g~~v~V~G~v~~~~~---ge~ei~~~~i~vl~~~~---~plP~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~ 179 (493)
T 3a74_A 106 SDLGDIVGVRGTMFKTKV---GELSIKVSSYEFLTKAL---RPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSL 179 (493)
T ss_dssp CCTTCEEEEEEEEEECTT---CCEEEEEEEEEEEECCS---SCCCCC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEeCCC---CcEEEEEEEEEEccccc---CCCCccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHH
Confidence 899999999999999875 59999999999999984 566666554 6777789999996 8999999999999
Q ss_pred HHHHHHHHHHhCCcEEEccCeeecCCCCCC-cccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhh
Q 010544 172 LAYATHTFLQKQGFLYIHTPIITTSDCEGA-GEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLK 250 (507)
Q Consensus 172 i~~~~r~fl~~~~f~ev~TPil~~~~~ega-~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~ 250 (507)
|++++|+||.++||+||+||+|+++ ++|+ +++|.+.
T Consensus 180 i~~~iR~ff~~~gF~EVeTPiL~~~-~~Ga~a~~F~~~------------------------------------------ 216 (493)
T 3a74_A 180 IIQSMRRYLDSHGYLEVETPMMHAV-AGGAAARPFITH------------------------------------------ 216 (493)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEESS-CCSSSSCCCEEE------------------------------------------
T ss_pred HHHHHHHHHHhCCeEEEECCeEEec-CCCCcccceEec------------------------------------------
Confidence 9999999999999999999999977 5555 4666442
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEee
Q 010544 251 SDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGP 329 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p 329 (507)
.++|++++||+||||||||++ ++|++|||||||
T Consensus 217 ----------------------------------------------~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~ 250 (493)
T 3a74_A 217 ----------------------------------------------HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGR 250 (493)
T ss_dssp ----------------------------------------------ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEE
T ss_pred ----------------------------------------------ccCCCceeEEecCHHHHHHHHhhcccCceEEECc
Confidence 125788999999999999986 578999999999
Q ss_pred ccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceee
Q 010544 330 TFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERI 409 (507)
Q Consensus 330 ~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~ri 409 (507)
|||||++ +.||+|||||||+||+|+|++|+|+++|+||+++++.+.+++. +.+.+..+ .++.||+||
T Consensus 251 ~FR~E~~-~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~--i~~~~~~i----------~~~~pf~ri 317 (493)
T 3a74_A 251 VFRNEGI-STRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTK--IQYGEHLV----------DLTPEWRRL 317 (493)
T ss_dssp EECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSE--EEETTEEE----------ECCSSCEEE
T ss_pred cccCCCC-CcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCce--EeeCCEee----------ccCCCccee
Confidence 9999999 4599999999999999999999999999999999999988763 55443322 156799999
Q ss_pred eHHHHHHHHHhhhh-cC------------Cccccccc--cccccchHHHHHHHHHHcCCCeEEEecCCCCccceeeecCC
Q 010544 410 TYTEAVELLEVAVK-EG------------KHFENKVE--WGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFYMRLNDD 474 (507)
Q Consensus 410 ty~eAi~~l~~~~~-~~------------~~~~~~~~--~g~dl~~e~Er~L~e~~~~~P~fVtdyP~~~~Pfy~~~~~d 474 (507)
||.||++.+.+.+. .. ..+..... +|..+....|. +++..+.+|+||+|||..++||||++++|
T Consensus 318 ty~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~-~ve~~~~~p~fv~dyP~~~~pf~~~~~~d 396 (493)
T 3a74_A 318 HMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQ-KVEDKLIQPTFIYGHPVEISPLAKKNPDD 396 (493)
T ss_dssp EHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHH-HTGGGCCSCEEEECCBGGGCTTBCBCSSC
T ss_pred eHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHH-HhhcccCCcEEEECCCcccCCccCcCCCC
Confidence 99999999975321 00 00111112 23333333333 44445678999999999999999988889
Q ss_pred cCeEEEEEEEcCCceEEecccccccccccc
Q 010544 475 LKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 475 ~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
|++++|||||+| |.||+|||+|+||++.+
T Consensus 397 p~~~~~fDL~i~-G~Ei~~G~~el~d~~~q 425 (493)
T 3a74_A 397 PRFTDRFELFIV-GREHANAFTELNDPIDQ 425 (493)
T ss_dssp TTBBSEEEEEET-TEEEEEEEEBCCCHHHH
T ss_pred CCeEEEEEEEeC-CeEEecCcceeCCHHHH
Confidence 999999999997 66999999999998653
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=4.3e-71 Score=604.50 Aligned_cols=355 Identities=19% Similarity=0.254 Sum_probs=281.2
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc--hhcccCCCCcEEEE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVYV 104 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~--~~~~~L~~gs~V~V 104 (507)
++++++.+|. .++.|++|+|+|||+++|.+| |++|++|||++|. ||||++++.. +..+.|+.||+|.|
T Consensus 2 ~rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~l~~e~~V~V 71 (580)
T 1l0w_A 2 RRTHYAGSLR------ETHVGEEVVLEGWVNRRRDLG--GLIFLDLRDREGL--VQLVAHPASPAYATAERVRPEWVVRA 71 (580)
T ss_dssp CCSSCGGGCC------GGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECTTSTTHHHHTTCCTTCEEEE
T ss_pred CcEEEHHHhH------HHhCCCEEEEEEEEEEEecCC--CeEEEEEEECCee--EEEEEeCChhHHHHHhcCCCCcEEEE
Confidence 3566777765 467899999999999999999 8999999999985 9999987532 23457999999999
Q ss_pred EEEEeCCCCC----CcceeEEEEeEEEEeeCCCCCCCCCCC------C-CCChhhhccccccccCcHHHHHHHHHHHHHH
Q 010544 105 EGMLKNPPEG----TKQKIELRVQKVVDVGMVDPAKYPIPK------T-KLTLEFLRDRIPFRPRTNTIAAVARIRNALA 173 (507)
Q Consensus 105 ~G~v~~~~~g----~~~~~El~v~~i~vls~a~~~~~Pl~~------~-~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~ 173 (507)
+|+|.+++.. ++|++||++++++|||+|.+.++|+.+ + ..+.+...++||||+|++.++++|++||+|+
T Consensus 72 ~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~ 151 (580)
T 1l0w_A 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVI 151 (580)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHH
Confidence 9999988521 458999999999999999745666654 3 3455655689999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccc
Q 010544 174 YATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDK 253 (507)
Q Consensus 174 ~~~r~fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 253 (507)
+++|+||.++||+||+||+|+.++||||++ |.|++..
T Consensus 152 ~~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~~~~------------------------------------------ 188 (580)
T 1l0w_A 152 KAIWDFLDREGFVQVETPFLTKSTPEGARD-FLVPYRH------------------------------------------ 188 (580)
T ss_dssp HHHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEECTT------------------------------------------
T ss_pred HHHHHHHHhCCcEEEeCCEEecCCCCCCCC-ccccccc------------------------------------------
Confidence 999999999999999999999999999988 8876320
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccc
Q 010544 254 AGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFR 332 (507)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FR 332 (507)
+.+.-+||.||||||||++ ++|++||||||||||
T Consensus 189 ---------------------------------------------~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR 223 (580)
T 1l0w_A 189 ---------------------------------------------EPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFR 223 (580)
T ss_dssp ---------------------------------------------STTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred ---------------------------------------------cCCceeECccCHHHHHHHHHHhccCCeEEEeceee
Confidence 0111125999999999975 678999999999999
Q ss_pred cCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCceeeeHH
Q 010544 333 AEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYT 412 (507)
Q Consensus 333 aE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~ 412 (507)
||+++++||+ |||||||||+|+|++|+|+++|+||+++++.+.+. .+..||+||||.
T Consensus 224 ~E~~~~~r~p-EFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~----------------------~~~~pf~rity~ 280 (580)
T 1l0w_A 224 DEDLRADRQP-DFTQLDLEMSFVEVEDVLELNERLMAHVFREALGV----------------------ELPLPFPRLSYE 280 (580)
T ss_dssp CCCCCSSCCS-EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTCC----------------------CCCSSCCEEEHH
T ss_pred CCCCCCCcCC-CccceeeeecCCCHHHHHHHHHHHHHHHHHHHhCC----------------------ccCCCccEEEHH
Confidence 9999777665 99999999999999999999999999999987542 134689999999
Q ss_pred HHHHHHHhhhhcC----------------Cccc------------------------------------c-ccccccc-c
Q 010544 413 EAVELLEVAVKEG----------------KHFE------------------------------------N-KVEWGID-L 438 (507)
Q Consensus 413 eAi~~l~~~~~~~----------------~~~~------------------------------------~-~~~~g~d-l 438 (507)
||++.|.. ++.. ..+. . ...|+.+ +
T Consensus 281 eA~~~~g~-dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 359 (580)
T 1l0w_A 281 EAMERYGS-DKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGF 359 (580)
T ss_dssp HHHHHHSS-SSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEE
T ss_pred HHHHHhcC-CCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccc
Confidence 99999831 1000 0000 0 0123322 3
Q ss_pred chHHHHHH---------------------------------H-------HHH-----cCCCeEEEecCCC----------
Q 010544 439 ASEHERYL---------------------------------T-------EVK-----FQKPVIVYNYPKG---------- 463 (507)
Q Consensus 439 ~~e~Er~L---------------------------------~-------e~~-----~~~P~fVtdyP~~---------- 463 (507)
.+++++++ + +.. ..+|+||+|||..
T Consensus 360 ~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~~~~p~fV~dfP~~~~~~~~~~~~ 439 (580)
T 1l0w_A 360 SGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWT 439 (580)
T ss_dssp ESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCCSCCEEEEECCBSBCCCTTTSCCC
T ss_pred cchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhcccccccCeEEEEcCCcccccccccccc
Confidence 33333332 1 110 3579999999996
Q ss_pred --CccceeeecC-------Cc-Ce-EEEEEEEcCCceEEecccccccccccc
Q 010544 464 --IKAFYMRLND-------DL-KT-VAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 464 --~~Pfy~~~~~-------d~-~~-~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
.+||||++++ || ++ +++||||++ |.||+|||+|+||++.+
T Consensus 440 a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~-G~Ei~~Gs~ri~d~~~q 490 (580)
T 1l0w_A 440 YMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLN-GVEVGGGSIRIHDPRLQ 490 (580)
T ss_dssp BSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEET-TEEEEEEEEBCCCHHHH
T ss_pred cccCCccCCCchhhhhhcCCccceeeeEEEEEeC-CEEEEeCeeecCCHHHH
Confidence 8999998765 46 46 899999997 66999999999999864
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=4.4e-70 Score=597.85 Aligned_cols=251 Identities=23% Similarity=0.294 Sum_probs=214.1
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc---hhcccCCCCcEEEE
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYV 104 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---~~~~~L~~gs~V~V 104 (507)
+++++.+|. .++.|++|+|+|||+++|.+| +++|++|||++|. ||||++++.. +..+.|+.||+|.|
T Consensus 2 rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~G--~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLR------LSHVGQQVTLCGWVNRRRDLG--SLIFIDMRDREGI--VQVFFDPDRADALKLASELRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCC------GGGTTCEEEEEEEEEEEEECS--SCEEEEEEETTEE--EEEEECGGGHHHHHHHTTCCTTCEEEE
T ss_pred ceeEHHHHH------HHhCCCEEEEEEEEEEEecCC--CcEEEEEEECCee--EEEEEeCCchHHHHHHhcCCCCCEEEE
Confidence 345566654 467899999999999999999 8999999999985 9999987532 23457999999999
Q ss_pred EEEEeCCCCC------CcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHHHHHHHHHHHH
Q 010544 105 EGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHT 178 (507)
Q Consensus 105 ~G~v~~~~~g------~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~rs~i~~~~r~ 178 (507)
+|+|.+++.+ ++|++||+++++++||+|.+.++|+.. ..+.+.+.++||||+|++.++++|++||.|++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-cCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998643 468999999999999998643455444 456666668999999999999999999999999999
Q ss_pred HHHhCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhh
Q 010544 179 FLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREA 258 (507)
Q Consensus 179 fl~~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 258 (507)
||.++||+||+||+|+.++||||++ |.|++..
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~~~~----------------------------------------------- 182 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVPSRV----------------------------------------------- 182 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEECSS-----------------------------------------------
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceecccc-----------------------------------------------
Confidence 9999999999999999999999988 8876421
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEEeeccccCCCC
Q 010544 259 ISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTFGPTFRAEHSH 337 (507)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI~p~FRaE~~~ 337 (507)
+.+.-+||.||||||||++ ++|++||||||||||||+++
T Consensus 183 ----------------------------------------~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~ 222 (585)
T 1c0a_A 183 ----------------------------------------HKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLR 222 (585)
T ss_dssp ----------------------------------------STTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCB
T ss_pred ----------------------------------------cCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCC
Confidence 0111135999999999975 67899999999999999997
Q ss_pred CCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcc
Q 010544 338 TSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDH 378 (507)
Q Consensus 338 t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~ 378 (507)
++||+ |||||||||+|+|++|+|+++|+||+++++.+.+.
T Consensus 223 t~r~p-EFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~ 262 (585)
T 1c0a_A 223 ADRQP-EFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGV 262 (585)
T ss_dssp TTBCS-EEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCcCc-ccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 77775 99999999999999999999999999999998653
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-59 Score=512.08 Aligned_cols=267 Identities=21% Similarity=0.282 Sum_probs=225.0
Q ss_pred cccccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-----hhcccCCC
Q 010544 24 HQFSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-----DLGQLVPT 98 (507)
Q Consensus 24 ~~~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-----~~~~~L~~ 98 (507)
.|+.+++++.+|. ..+.|++|+|+|||+++|.+ +|++|||++|. ||||++++.. +..+.|+.
T Consensus 7 ~~~~rt~~~~~l~------~~~~g~~V~l~GwV~~~R~~-----~Fi~LrD~~g~--iQvv~~~~~~~~~~~~~~~~l~~ 73 (617)
T 4ah6_A 7 SFVVRTNTCGELR------SSHLGQEVTLCGWIQYRRQN-----TFLVLRDFDGL--VQVIIPQDESAASVKKILCEAPV 73 (617)
T ss_dssp CSSSCSSCGGGCC------GGGTTCEEEEEEEECCCCTT-----TEEEEECSSCE--EEEECCCSSSSHHHHHHHHHCCS
T ss_pred ccccCceEHHHhH------HHhCCCEEEEEEEeeeecCe-----EEEEEEeCCcC--EEEEEeCCcCcHHHHHHHhcCCC
Confidence 3667777777775 46789999999999999963 49999999985 9999987642 23456999
Q ss_pred CcEEEEEEEEeCCCCC------CcceeEEEEeEEEEeeCCCCCCCCCCCCCC---ChhhhccccccccCcHHHHHHHHHH
Q 010544 99 GTCVYVEGMLKNPPEG------TKQKIELRVQKVVDVGMVDPAKYPIPKTKL---TLEFLRDRIPFRPRTNTIAAVARIR 169 (507)
Q Consensus 99 gs~V~V~G~v~~~~~g------~~~~~El~v~~i~vls~a~~~~~Pl~~~~~---~~e~~r~~~~l~~R~~~~~~~~~~r 169 (507)
||+|.|+|+|++++.+ ++|++||+++++++||+|. ++|++.+.+ +.+...++||||+|++.++++|++|
T Consensus 74 e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~--~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~R 151 (617)
T 4ah6_A 74 ESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK--KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLR 151 (617)
T ss_dssp SCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC--CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC--CCCcccccccccChhhhccceeeeecchHHHHHHHHH
Confidence 9999999999886532 3579999999999999995 678765443 3454558999999999999999999
Q ss_pred HHHHHHHHHHHH-hCCcEEEccCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHh
Q 010544 170 NALAYATHTFLQ-KQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAK 248 (507)
Q Consensus 170 s~i~~~~r~fl~-~~~f~ev~TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~ 248 (507)
|.|++++|+||. ++||+||+||+|++++||||++ |.+++.
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~~-------------------------------------- 192 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPSR-------------------------------------- 192 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEECS--------------------------------------
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceeccc--------------------------------------
Confidence 999999999996 7999999999999999999987 877531
Q ss_pred hhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCceeeEeechhhhHHHH-hhccCcEEEE
Q 010544 249 LKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFARQAFLTVSGQLQVETY-ACAVSNVYTF 327 (507)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~~~yL~~S~Ql~le~l-~~g~~rVfeI 327 (507)
.+++.+||+||||||||++ ++|++|||||
T Consensus 193 --------------------------------------------------~~g~~~~L~qSpql~kq~l~v~g~~rvfqi 222 (617)
T 4ah6_A 193 --------------------------------------------------EPGKFYSLPQSPQQFKQLLMVGGLDRYFQV 222 (617)
T ss_dssp --------------------------------------------------STTCEEECCSSTTHHHHHHHHTSCSEEEEE
T ss_pred --------------------------------------------------cCCcccccccCHHHHHHHHHhcccCcEEEE
Confidence 1345578999999999975 6899999999
Q ss_pred eeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhccCCchhhhhhccccCCCce
Q 010544 328 GPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKNYDKSCINRLRMVASTPFE 407 (507)
Q Consensus 328 ~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~ 407 (507)
|||||||++ ..+|+||||||||||+|+|++|+|+++|+||+++++.+.. .+..||+
T Consensus 223 ~~~FR~E~~-~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~-----------------------~~~~pf~ 278 (617)
T 4ah6_A 223 ARCYRDEGS-RPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKD-----------------------PVVVPFP 278 (617)
T ss_dssp EEEECCCSS-CSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSC-----------------------CCCSSCC
T ss_pred EhheecccC-CCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcC-----------------------ccCCCce
Confidence 999999999 4555999999999999999999999999999998754211 1457899
Q ss_pred eeeHHHHHHHH
Q 010544 408 RITYTEAVELL 418 (507)
Q Consensus 408 rity~eAi~~l 418 (507)
||||.||++.|
T Consensus 279 r~ty~eA~~~y 289 (617)
T 4ah6_A 279 TMTFAEVLATY 289 (617)
T ss_dssp EEEHHHHHHHT
T ss_pred EeEHHHHHHHH
Confidence 99999999998
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=1.1e-50 Score=418.91 Aligned_cols=225 Identities=18% Similarity=0.203 Sum_probs=181.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCCCCCC-cccceeeccccchhhhhhhhcCCCCCChhhHHHHH
Q 010544 158 RTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGA-GEMFQVTTLISDADKLEKELIKNPPPSEADIEAAK 236 (507)
Q Consensus 158 R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~~ega-~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (507)
|++ .+++|++||.|++++|+||.++||+||+||+|++++++|+ ++.|.+
T Consensus 29 ~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~----------------------------- 78 (345)
T 3a5y_A 29 PSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFET----------------------------- 78 (345)
T ss_dssp CSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEE-----------------------------
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEE-----------------------------
Confidence 444 6899999999999999999999999999999999887765 444332
Q ss_pred HHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccC------ceeeEeech
Q 010544 237 LVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFA------RQAFLTVSG 310 (507)
Q Consensus 237 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~------~~~yL~~S~ 310 (507)
+||+ +++||+|||
T Consensus 79 -------------------------------------------------------------~~~~~~~~~~~~~yL~~Sp 97 (345)
T 3a5y_A 79 -------------------------------------------------------------RFVGPGHSQGMNLWLMTSP 97 (345)
T ss_dssp -------------------------------------------------------------EECCSTTSCCEEEEECSCS
T ss_pred -------------------------------------------------------------EecCcccccCCCEeecCCH
Confidence 3443 679999999
Q ss_pred hhhHHH-HhhccCcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhcccccchhhhhcc
Q 010544 311 QLQVET-YACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHCFDDMEFMAKN 389 (507)
Q Consensus 311 Ql~le~-l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~~~~i~~~~~~ 389 (507)
|||||+ +++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||+++++ +
T Consensus 98 ql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~-----~---------- 161 (345)
T 3a5y_A 98 EYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD-----C---------- 161 (345)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC-----C----------
T ss_pred HHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc-----C----------
Confidence 999995 57899999999999999999 999999999999999999999999999999999985 0
Q ss_pred CCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcC----------Cccccc-cccc-cccchHHHHHHHHHH---c--C
Q 010544 390 YDKSCINRLRMVASTPFERITYTEAVELLEVAVKEG----------KHFENK-VEWG-IDLASEHERYLTEVK---F--Q 452 (507)
Q Consensus 390 ~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~----------~~~~~~-~~~g-~dl~~e~Er~L~e~~---~--~ 452 (507)
.||+||||.||++.+.+.+... ++++.. ..++ .++....|++|++.+ + .
T Consensus 162 --------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~ 227 (345)
T 3a5y_A 162 --------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKE 227 (345)
T ss_dssp --------------CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGGGSSSS
T ss_pred --------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCC
Confidence 2799999999999885542111 011111 2333 456666788877643 3 5
Q ss_pred CCeEEEecCCCCccceeeecCCcCeEEEEEEEcCCceEEecccccccccccc
Q 010544 453 KPVIVYNYPKGIKAFYMRLNDDLKTVAAMDVLVPKVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 453 ~P~fVtdyP~~~~Pfy~~~~~d~~~~~rFDLl~pgg~EI~~GsqRe~~~~~l 504 (507)
+|+||+|||..++||++.+++++.+++|||||+| |.||+||++|++|++.+
T Consensus 228 ~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~-G~Ei~~G~~rl~d~~~q 278 (345)
T 3a5y_A 228 KPTFVYHFPASQASLAQISTEDHRVAERFEVYYK-GIELANGFHELTDAREQ 278 (345)
T ss_dssp SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEET-TEEEEEEEEBCCCHHHH
T ss_pred CEEEEECCChhhChhhCCCCCCCCeEEEEEEEEC-CEEEeeeEEEeCCHHHH
Confidence 7999999999999999877778889999999997 56999999999998764
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=4.4e-44 Score=362.64 Aligned_cols=217 Identities=19% Similarity=0.222 Sum_probs=183.0
Q ss_pred cccccccCcHHHHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC--------CCCCCcccceeeccccchhhhhhhhc
Q 010544 151 DRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS--------DCEGAGEMFQVTTLISDADKLEKELI 222 (507)
Q Consensus 151 ~~~~l~~R~~~~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~--------~~ega~~~f~v~t~~~~~~~~~~~~~ 222 (507)
++|++++|++ +++++++|+.|++++|+||.++||+||+||+|+++ ++|| +++
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~------------------ 60 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEP------------------ 60 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCC------------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-cee------------------
Confidence 4789999999 99999999999999999999999999999999998 5555 443
Q ss_pred CCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCCccccccccCc
Q 010544 223 KNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEERSKLKPGIPQKDGKIDYTQDFFAR 302 (507)
Q Consensus 223 ~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~f~~ 302 (507)
|..+|+++
T Consensus 61 ------------------------------------------------------------------------f~~~~~~~ 68 (294)
T 1nnh_A 61 ------------------------------------------------------------------------AEVEIYGV 68 (294)
T ss_dssp ------------------------------------------------------------------------CEEEETTE
T ss_pred ------------------------------------------------------------------------EEEEcCCC
Confidence 33447788
Q ss_pred eeeEeechhhhHHHHh-hccCcEEEEeeccccCC--CCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhhccc
Q 010544 303 QAFLTVSGQLQVETYA-CAVSNVYTFGPTFRAEH--SHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWLLDHC 379 (507)
Q Consensus 303 ~~yL~~S~Ql~le~l~-~g~~rVfeI~p~FRaE~--~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v~~~~ 379 (507)
.+||++|||+|+|+++ +|++|||+||||||+|+ +++.||+|||||||+|++|.|++|+|+++|++++.+++.+.+..
T Consensus 69 ~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~~~~~~ 148 (294)
T 1nnh_A 69 KMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWT 148 (294)
T ss_dssp EEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8999999999999875 56999999999999999 87789999999999999999999999999999999998775421
Q ss_pred ccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccchHHHHHHHHHHcCCCeEEEe
Q 010544 380 FDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYN 459 (507)
Q Consensus 380 ~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~~e~Er~L~e~~~~~P~fVtd 459 (507)
+..++ . ++ +|+|++|.||++.+ |. ++|+ ++. ..+|+||+|
T Consensus 149 -------~~~i~--------~-~~-~~~r~~y~ea~~~~----------------g~----~~er--~~~-~~~P~~v~~ 188 (294)
T 1nnh_A 149 -------GREFP--------K-TK-RFEVFEYSEVLEEF----------------GS----DEKA--SQE-MEEPFWIIN 188 (294)
T ss_dssp -------SSCCC--------C-CS-SCEEEEHHHHHHHT----------------SS----HHHH--HHH-CSSCEEEEC
T ss_pred -------ccccc--------c-CC-CceEeEHHHHHHHh----------------CC----hHhh--hhh-cCCCEEEEc
Confidence 11111 0 22 39999999999643 21 3455 443 578999999
Q ss_pred cCCCCccceeeecCCcCeEEEEEEEcC-CceEEecccccccccccc
Q 010544 460 YPKGIKAFYMRLNDDLKTVAAMDVLVP-KVTCFFKKFQALDWLLYF 504 (507)
Q Consensus 460 yP~~~~Pfy~~~~~d~~~~~rFDLl~p-gg~EI~~GsqRe~~~~~l 504 (507)
|| +|||++. |++++++||||++ |.+||+|||+|++|++.+
T Consensus 189 ~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l 229 (294)
T 1nnh_A 189 IP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKI 229 (294)
T ss_dssp CC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHH
T ss_pred CC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHH
Confidence 99 9999876 7889999999998 777999999999999875
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.79 E-value=1.5e-20 Score=189.57 Aligned_cols=168 Identities=14% Similarity=0.132 Sum_probs=126.0
Q ss_pred CcceeEEEEeEEEEeeCCCCCCCCCCCCCCChhhhccccccccCcHHHHHHHHH-----HHHHHHHHHHHHHhCCcEEEc
Q 010544 115 TKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARI-----RNALAYATHTFLQKQGFLYIH 189 (507)
Q Consensus 115 ~~~~~El~v~~i~vls~a~~~~~Pl~~~~~~~e~~r~~~~l~~R~~~~~~~~~~-----rs~i~~~~r~fl~~~~f~ev~ 189 (507)
++|++||+++++++||+|. .++|++.+.. . ..+++++||+|++.+.++++. ++.+.+.+|++|.+.||.||.
T Consensus 23 ~~~~~ei~~~~~~vl~~a~-~~~P~~~~~~-~-~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~EV~ 99 (290)
T 3qtc_A 23 APALTKSQTDRLEVLLNPK-DEISLNSGKP-F-RELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIK 99 (290)
T ss_dssp -CCCCHHHHHHHHHHCCTT-CC----CCSC-H-HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCceEEEEhhhhhhhccCC-CCCCCCcchh-h-hhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEEEE
Confidence 5689999999999999986 4678765543 2 367899999999999999999 999999999999999999999
Q ss_pred cCeeecCCCCCCcccceeeccccchhhhhhhhcCCCCCChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHH
Q 010544 190 TPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKA 269 (507)
Q Consensus 190 TPil~~~~~ega~~~f~v~t~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (507)
||+|++.++. +.+.++. .+|.
T Consensus 100 Tp~l~~~~~~---~~~~~~~-------------~~p~------------------------------------------- 120 (290)
T 3qtc_A 100 SPILIPLEYI---ERMGIDN-------------DTEL------------------------------------------- 120 (290)
T ss_dssp CCSEEETHHH---HHTTCCT-------------TSSG-------------------------------------------
T ss_pred CCceeeHHHH---HhcCCCc-------------CCch-------------------------------------------
Confidence 9999987321 1111100 0000
Q ss_pred HHHHHHHhhhhccCCCCCCCCCCccc-cccccCceeeEe--echhhhHHHH--h---hccCcEEEEeeccccCCCCCCCC
Q 010544 270 KENLAKLEERSKLKPGIPQKDGKIDY-TQDFFARQAFLT--VSGQLQVETY--A---CAVSNVYTFGPTFRAEHSHTSRH 341 (507)
Q Consensus 270 ~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~f~~~~yL~--~S~Ql~le~l--~---~g~~rVfeI~p~FRaE~~~t~rH 341 (507)
+ ...+|+...+|. +|||++.++. . .+..|+||||+|||+|.. +.+|
T Consensus 121 -------------------------~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~-~~~~ 174 (290)
T 3qtc_A 121 -------------------------SKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEH 174 (290)
T ss_dssp -------------------------GGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSC-SSSC
T ss_pred -------------------------hhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCC-CCcC
Confidence 0 122456678999 9999996654 2 235899999999999976 7899
Q ss_pred ccccccccccccCCC--HHHHHHHHHHHHHH
Q 010544 342 LAEFWMVEPEMAFSD--LKDDMNCAEAYVKF 370 (507)
Q Consensus 342 l~EFtmLE~E~af~d--~~dlm~~~E~li~~ 370 (507)
++||||+|+++++.+ +.+++.+++++++.
T Consensus 175 ~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~ 205 (290)
T 3qtc_A 175 LEEFTMLVFWQMGSGCTRENLESIITDFLNH 205 (290)
T ss_dssp CSEEEEEEEEEESTTCCHHHHHHHHHHHHHH
T ss_pred cchheEEEEEEEcCChHHHHHHHHHHHHHHH
Confidence 999999999999864 66676666666654
No 19
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=99.26 E-value=9.2e-11 Score=117.73 Aligned_cols=175 Identities=12% Similarity=-0.023 Sum_probs=128.1
Q ss_pred CceeeEeechhhhHHHHhh--cc---CcEEEEeeccccCCC-CCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHH
Q 010544 301 ARQAFLTVSGQLQVETYAC--AV---SNVYTFGPTFRAEHS-HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (507)
Q Consensus 301 ~~~~yL~~S~Ql~le~l~~--g~---~rVfeI~p~FRaE~~-~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~ 374 (507)
+..+-+++|--.||++.+. +| +++|+..++.|.++. -+.+|.-+|+|.|||......+..|+.++++++.|...
T Consensus 64 ~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~Iy~~ 143 (330)
T 12as_A 64 DAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAG 143 (330)
T ss_dssp TCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHHHHH
T ss_pred CceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHHHHH
Confidence 4556799999999997653 58 999999999998654 68999999999999999988888999999998888877
Q ss_pred hhcccccchhhhhccCCchhhhhhccccCCCceeeeHHHHHHHHHhhhhcCCccccccccccccc-hHHHHHHHHHHcCC
Q 010544 375 LLDHCFDDMEFMAKNYDKSCINRLRMVASTPFERITYTEAVELLEVAVKEGKHFENKVEWGIDLA-SEHERYLTEVKFQK 453 (507)
Q Consensus 375 v~~~~~~~i~~~~~~~~~~~~~~l~~~~~~pf~rity~eAi~~l~~~~~~~~~~~~~~~~g~dl~-~e~Er~L~e~~~~~ 453 (507)
+...- .++...+. ++..+..++..||.+|+.+.|- +++ .+.|..+++.+ +
T Consensus 144 ik~tE----~~~~~~y~------l~p~Lp~~i~fitsqeL~~~YP-----------------~lt~keRE~~i~ke~--g 194 (330)
T 12as_A 144 IKATE----AAVSEEFG------LAPFLPDQIHFVHSQELLSRYP-----------------DLDAKGRERAIAKDL--G 194 (330)
T ss_dssp HHHHH----HHHHHHSC------CCCCSCSSCEEEEHHHHHHHSS-----------------SSCHHHHHHHHHHHH--S
T ss_pred HHHHH----HHHHHHhc------cCcCCCCceEEEeHHHHHHHcC-----------------CCChHHHHHHHHHhh--C
Confidence 65431 12222221 1123567889999999888761 222 34577788763 8
Q ss_pred CeEEEecCCCCcc--cee-eecCCcCeE---------EEEEEEc-----CCceEEeccccccccccccc
Q 010544 454 PVIVYNYPKGIKA--FYM-RLNDDLKTV---------AAMDVLV-----PKVTCFFKKFQALDWLLYFI 505 (507)
Q Consensus 454 P~fVtdyP~~~~P--fy~-~~~~d~~~~---------~rFDLl~-----pgg~EI~~GsqRe~~~~~l~ 505 (507)
+|||++.|..++. ++. +.++-..+. .+.||++ .+.+||.+++.| -|++.|+
T Consensus 195 aVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~ 262 (330)
T 12as_A 195 AVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLK 262 (330)
T ss_dssp EEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHH
T ss_pred CEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHH
Confidence 9999999976542 332 222223455 7899999 368899999999 6666553
No 20
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.77 E-value=7.2e-09 Score=104.51 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred eeEeechhhhH-HHHhhc----cCcEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHHHH
Q 010544 304 AFLTVSGQLQV-ETYACA----VSNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 304 ~yL~~S~Ql~l-e~l~~g----~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i~~ 373 (507)
.+|.+|.--.+ +.+..+ -.|+||||+|||+++. +.+|+|||+||++++++ .|+.|++..+|.++..++.
T Consensus 110 ~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g 185 (294)
T 2rhq_A 110 ILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG 185 (294)
T ss_dssp EEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred ceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 45655544344 455555 5799999999999775 56799999999999998 5799999999999987753
No 21
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.65 E-value=5.1e-08 Score=100.59 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=51.9
Q ss_pred EeechhhhHHHHhhc-c-CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHHHH
Q 010544 306 LTVSGQLQVETYACA-V-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 306 L~~S~Ql~le~l~~g-~-~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i~~ 373 (507)
.+.||.+. +.+..+ . -|+|+||+|||+|.. +.+|+|||+|||+++.+. ++.|++..++.+++.++.
T Consensus 177 t~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 177 THTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 246 (350)
T ss_dssp SSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC
T ss_pred ccchHHHH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 44555443 445443 3 389999999999886 678999999999999986 789999999999887753
No 22
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.36 E-value=3.6e-07 Score=91.84 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=38.1
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCCC----HHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD----LKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d----~~dlm~~~E~li~~i 371 (507)
|+|+||+|||+|.. +..|.+||+|+|++....+ +.+++.+++++++.+
T Consensus 151 rlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 151 RIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 89999999999988 7788999999999987652 455666666555544
No 23
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.85 E-value=3.7e-05 Score=81.26 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
.-.+++..|.+.+++.+.+.||.||.||+|...+
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 203 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPE 203 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 4568899999999999999999999999999863
No 24
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.79 E-value=6e-05 Score=76.89 Aligned_cols=58 Identities=10% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHhhccC--cEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHHHH
Q 010544 314 VETYACAVS--NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 314 le~l~~g~~--rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i~~ 373 (507)
++.+..+-. |+|++|+|||.+ . +.+|+|+|.|+|..... .++.++...++.+++.++.
T Consensus 175 lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 175 IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 444544433 999999999997 4 88999999999987664 4689999999999988864
No 25
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=97.76 E-value=5.4e-05 Score=80.58 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 162 IAAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 162 ~~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~ 97 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLA 97 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcH
Confidence 34567899999999999999999999999999885
No 26
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=97.74 E-value=4.5e-05 Score=79.56 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 60 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 60 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccH
Confidence 3456889999999999999999999999999886
No 27
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=97.54 E-value=0.00018 Score=75.13 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
.-.+++..|...+|+.|.+.||.||.||+|...+
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 47 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD 47 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHH
Confidence 3468899999999999999999999999999853
No 28
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=97.49 E-value=0.00038 Score=74.53 Aligned_cols=35 Identities=9% Similarity=0.093 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
-.-.+++..|...+|+.|.+.||.||.||+|.+..
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~e 75 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMS 75 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEST
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 34568899999999999999999999999999864
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.48 E-value=0.0005 Score=72.50 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+++.+.+.||.||.||+|...
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~ 196 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYARE 196 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecH
Confidence 457889999999999999999999999999875
No 30
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.46 E-value=0.0004 Score=75.68 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 44 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 77 (572)
T 2j3l_A 44 PLANRVLEKLKTIMREEFEKIDAVEMLMPALLPA 77 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEET
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 4567899999999999999999999999999886
No 31
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=97.44 E-value=0.00026 Score=78.41 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 268 P~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~ 301 (645)
T 1nyr_A 268 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANV 301 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEET
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccH
Confidence 4567899999999999999999999999999886
No 32
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.44 E-value=0.00024 Score=75.70 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFL-QKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl-~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.+ .+.||.||.||+|...
T Consensus 61 P~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~ 95 (460)
T 3uh0_A 61 PNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKK 95 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEH
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccH
Confidence 345789999999999999 9999999999999875
No 33
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.43 E-value=0.00067 Score=71.33 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 50 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYL 50 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccH
Confidence 346889999999999999999999999999885
No 34
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.41 E-value=0.00081 Score=68.93 Aligned_cols=33 Identities=3% Similarity=0.080 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~ 66 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYT 66 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcH
Confidence 346788999999999999999999999999875
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.39 E-value=0.00072 Score=70.75 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+.|...||.||.||+|...
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~ 54 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYY 54 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 346789999999999999999999999999765
No 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.35 E-value=0.00059 Score=72.96 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++.+|++.+++.+.+.||.||.||.|...
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~ 215 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNK 215 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 557899999999999999999999999999886
No 37
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.35 E-value=0.00071 Score=72.70 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=41.2
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~i 371 (507)
|+|+||+|||+|.. +.+|+|+|+|+|..... .++.|++.+++.+++.+
T Consensus 349 riFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 349 KYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred eEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999999998 88999999999997764 46888888888877654
No 38
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.30 E-value=0.00078 Score=70.39 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+-|.+.||.||.||+|...
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 47 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEET 47 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccH
Confidence 346789999999999999999999999999875
No 39
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.28 E-value=0.00087 Score=70.08 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~ 48 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQT 48 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHH
Confidence 346889999999999999999999999999875
No 40
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.23 E-value=0.00091 Score=74.11 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.+.+.||.||.||+|...
T Consensus 268 P~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~ 301 (642)
T 1qf6_A 268 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDR 301 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEET
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccH
Confidence 4567899999999999999999999999999886
No 41
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.23 E-value=0.00079 Score=71.78 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~ 76 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHT 76 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccH
Confidence 346889999999999999999999999999875
No 42
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.20 E-value=0.0013 Score=69.97 Aligned_cols=34 Identities=15% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.|.+.||.||.||+|...
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~ 68 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPE 68 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCH
Confidence 3456889999999999999999999999999875
No 43
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.20 E-value=0.004 Score=54.97 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=68.1
Q ss_pred ccccceehhhhhcCCCCCCC-----CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCC-CceEEEEEeCCcch---hccc
Q 010544 25 QFSDRVLIKSILTRPDGGAG-----LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSC-PANLQVIVDKDVAD---LGQL 95 (507)
Q Consensus 25 ~~~~r~~i~~i~~~~~~~~~-----~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg-~~~IQvVv~~~~~~---~~~~ 95 (507)
+-...++||+|+.+...+.. ..=..|++.|+|.+++... .-.-+.|.|+|| . |.+....+... -...
T Consensus 4 ~~l~PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~--~~~~~~ldD~TG~~--I~~~~W~~~~~~~~~~~~ 79 (132)
T 3kdf_D 4 QHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTV 79 (132)
T ss_dssp -CCEECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECS--SEEEEEEECSSSSC--EEEEEEC---------CC
T ss_pred CceeeEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcC--CeEEEEEECCCCCE--EEEEEEccCCCccccccc
Confidence 33456899999875321111 1123589999999998887 455578899999 5 99988765321 1345
Q ss_pred CCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeC
Q 010544 96 VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 96 L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~ 131 (507)
+..|++|.|.|.++.-. |...|.+..+..+..
T Consensus 80 ~~~g~yVrV~G~l~~f~----g~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 80 VPPETYVKVAGHLRSFQ----NKKSLVAFKIMPLED 111 (132)
T ss_dssp CCTTCEEEEEEEEEEET----TEEEEEEEEEEECSS
T ss_pred ccCCCEEEEEEEEEeEC----CEEEEEEEEEEEcCC
Confidence 78999999999998754 367788888877765
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.19 E-value=0.0008 Score=71.60 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++..|...+++.+.+.||.||.||+|...
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~ 223 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRR 223 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCH
Confidence 457888999999999999999999999999986
No 45
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.16 E-value=0.00052 Score=73.39 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++.+|+..+++.+.+.||.||.||.|...
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~ 238 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNR 238 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccH
Confidence 3567999999999999999999999999999886
No 46
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.0022 Score=69.30 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=37.0
Q ss_pred cEEEEeeccccCCCCC-C-CCccccccccccccCCCHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHT-S-RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t-~-rHl~EFtmLE~E~af~d~~dlm~~~E~li~~ 370 (507)
|+|++|+|||.|-..+ . -=.-||+|.|.+..|.+.++..+.++.++..
T Consensus 150 rl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 150 KLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDL 199 (519)
T ss_dssp EEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHH
Confidence 8999999999994422 1 0123999999999999988888877776644
No 47
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.12 E-value=0.0017 Score=69.97 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=36.2
Q ss_pred cEEEEeeccccCCCCC-C--CCccccc-cccccccCCCHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHT-S--RHLAEFW-MVEPEMAFSDLKDDMNCAEAYVKF 370 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t-~--rHl~EFt-mLE~E~af~d~~dlm~~~E~li~~ 370 (507)
|+|++|+|||+|..++ . | .-||+ |.|++..+.+.++....+++++..
T Consensus 159 r~~q~g~~fR~E~~~~rGl~R-~REF~~q~e~~~~~~~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 159 RFYQVVNTFRYETKHTRPLIR-VREITTFKEAHTIHATASEAEEQVERAVEI 209 (501)
T ss_dssp EEEEEEEEECCCCSCCBTTTB-CSEEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEeecCEeeCCCCCCCCCce-eEEEeeeeeEEEEECCHHHHHHHHHHHHHH
Confidence 8999999999997622 1 2 23999 999999899887777776665543
No 48
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.10 E-value=0.0016 Score=70.56 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++.+|+..+++.+.+.||.||.||.|...
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~ 305 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYARE 305 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccH
Confidence 3567999999999999999999999999999875
No 49
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.10 E-value=0.0056 Score=54.30 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=67.7
Q ss_pred cceehhhhhcCCCCCC-------CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch----hcccC
Q 010544 28 DRVLIKSILTRPDGGA-------GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD----LGQLV 96 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~-------~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~----~~~~L 96 (507)
..++||+|+.+....+ ...=..|++.|+|.+++... .-.-+.|.|+||. |.+....+... -...+
T Consensus 10 ~PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~--~~~~~~ldD~TG~--I~~~~W~~~~~~~~~~~~~~ 85 (136)
T 4gop_B 10 RPVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNA--TNVAYSVEDGTGQ--IEVRQWLDSSSDDSSKASEI 85 (136)
T ss_dssp EECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECS--SEEEEEEECSSCE--EEEEEECC--------CCSC
T ss_pred EeEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecC--CeEEEEEECCCCC--EEEEEecccCCccccccccc
Confidence 4589999987532110 11223699999999998877 4455778999985 99988764321 13468
Q ss_pred CCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeC
Q 010544 97 PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 97 ~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~ 131 (507)
..|++|.|.|.++.-. +...|.+..+..+..
T Consensus 86 ~~g~yVrV~G~v~~f~----g~~qi~~~~ir~v~d 116 (136)
T 4gop_B 86 RNNVYVRVLGTLKSFQ----NRRSISSGHMRPVID 116 (136)
T ss_dssp CTTCEEEEEEEEEEET----TEEEEEESEEEECSS
T ss_pred CCCCEEEEEEEEEEeC----CEEEEEEEEEEECCC
Confidence 8999999999997654 367788888877665
No 50
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.10 E-value=0.0017 Score=68.51 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.|...||.||.||+|...
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~ 58 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK 58 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcH
Confidence 3456889999999999999999999999999754
No 51
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.09 E-value=0.0033 Score=67.55 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.++..+|++.+++.+.+.||.||.||.|...
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~ 249 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRG 249 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccH
Confidence 457889999999999999999999999999976
No 52
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.08 E-value=0.00084 Score=71.50 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC-----CCCCcc-cceeec
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTSD-----CEGAGE-MFQVTT 209 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~-----~ega~~-~f~v~t 209 (507)
.-.+.|..|...+|+.|...||.||.||++...+ .+...+ +|.+..
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d 75 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEP 75 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEec
Confidence 4467899999999999999999999999994321 133345 787764
No 53
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.08 E-value=0.0013 Score=70.81 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 164 AVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.-.+++.+|+..+++.+.+.||.||.||.|...
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~ 231 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRK 231 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccch
Confidence 457899999999999999999999999999875
No 54
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.05 E-value=0.0014 Score=67.96 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 166 ARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 166 ~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.+++..|...+|+.|...||.||.||+|...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~ 67 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYV 67 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeH
Confidence 5788999999999999999999999999765
No 55
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.98 E-value=0.0026 Score=67.59 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
-.+++..|...+|+.|...||.||.||++...+
T Consensus 42 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e 74 (456)
T 3lc0_A 42 AMRCRRHLFDVFHATAKTFGFEEYDAPVLESEE 74 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCcEeehh
Confidence 357899999999999999999999999998764
No 56
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=96.97 E-value=0.0013 Score=70.17 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEccCeeecCC
Q 010544 165 VARIRNALAYATHTFLQKQGFLYIHTPIITTSD 197 (507)
Q Consensus 165 ~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~~ 197 (507)
-.+++..|...+|+.|.+.||.||.||+|...+
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 80 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTE 80 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehH
Confidence 468899999999999999999999999999863
No 57
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.011 Score=50.35 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=68.7
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEeee---e----cCC-ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCC
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGR---E----QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTG 99 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR---~----~g~-~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~g 99 (507)
+-.+|++|. .+..|.|.|+|.++. . .|+ +++.=+.|.|.+| .|.+++..+.... .+.+|
T Consensus 4 ~~~~I~dL~---------~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~~--~l~~G 70 (105)
T 3dm3_A 4 DTYNIGELS---------PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTDI--DVGRG 70 (105)
T ss_dssp CEECGGGCC---------SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGGS--CCCTT
T ss_pred cceEHHHCC---------CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECccccc--ccCCC
Confidence 345677775 247899999998763 1 221 2566688999998 4999988775433 68999
Q ss_pred cEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 100 TCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 100 s~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
|+|.|.|.++.... +++||++.+...+.+|+
T Consensus 71 dvv~i~g~vk~~~~---g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 71 DYVRVRGYIREGYY---GGLECTANYVEILKKGE 101 (105)
T ss_dssp CEEEEEEEEEECTT---SSEEEEEEEEEEEECCC
T ss_pred CEEEEEEEEEEccC---CCEEEEeCCceEEEecc
Confidence 99999999988642 48999999999999986
No 58
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=96.92 E-value=0.00091 Score=72.05 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHH--hCCcEEEccCeeecCC
Q 010544 164 AVARIRNALAYATHTFLQ--KQGFLYIHTPIITTSD 197 (507)
Q Consensus 164 ~~~~~rs~i~~~~r~fl~--~~~f~ev~TPil~~~~ 197 (507)
.-.+++..|...+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 456899999999999999 8999999999999863
No 59
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=96.91 E-value=0.00086 Score=72.46 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=38.2
Q ss_pred cEEE-EeeccccCCC--CCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHh
Q 010544 323 NVYT-FGPTFRAEHS--HTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDWL 375 (507)
Q Consensus 323 rVfe-I~p~FRaE~~--~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~v 375 (507)
|+|+ +|+|||+|.. ++---.-||+|.|++. |.+.++..+..++++......+
T Consensus 346 rl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ee~ee~i~~~~~~~ 400 (522)
T 2cja_A 346 KVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLKCAEELHDRYMHIF 400 (522)
T ss_dssp EEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHHHHHHHHHHHHHHH
Confidence 8999 9999999933 2112334999999998 7788888888888883344433
No 60
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=96.90 E-value=0.004 Score=67.24 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=37.2
Q ss_pred cEEEEeeccccCCCCC-C-CCccccccccccccCCCHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHT-S-RHLAEFWMVEPEMAFSDLKDDMNCAEAYVKF 370 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t-~-rHl~EFtmLE~E~af~d~~dlm~~~E~li~~ 370 (507)
|+|++++|||+|-..+ . --.-||+|.|.+....+.++..+.++.++..
T Consensus 144 rl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~ 193 (518)
T 3ial_A 144 KIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKV 193 (518)
T ss_dssp EEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHH
Confidence 8999999999994312 1 1234999999999778888888888877643
No 61
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.83 E-value=0.0028 Score=68.26 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
-.-.++|..|...+|+.|...||.||.||+|...
T Consensus 78 P~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~ 111 (517)
T 4g85_A 78 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELK 111 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcH
Confidence 4456889999999999999999999999999764
No 62
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.78 E-value=0.0053 Score=52.60 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=60.5
Q ss_pred CCCEEEEEEEEEee---e----ecCC-ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcc
Q 010544 46 AGRQVRVGGWVKTG---R----EQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (507)
Q Consensus 46 ~g~~V~V~GwV~~i---R----~~g~-~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~ 117 (507)
.|+.+.+.|.|.++ | +.|+ +++..+.|.|+|| .|.+.+..........+..|++|.|.|.+....- .|
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~~~~~l~~G~vv~i~g~~v~~~f--~g 90 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIKLLKKFREGDVIRIKDVNIRGGF--GG 90 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGGGGGTCCTTSEEEEEEEEECCCS--SS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhhhhhcCCCCCEEEEEeeEEcccc--CC
Confidence 47899999999988 2 2231 2799999999998 4999988765433356899999999999855321 24
Q ss_pred eeEEEEeEEEEeeCC
Q 010544 118 KIELRVQKVVDVGMV 132 (507)
Q Consensus 118 ~~El~v~~i~vls~a 132 (507)
.++|.+.+...+.++
T Consensus 91 ~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 91 RKEAHLMPRSTVEVL 105 (115)
T ss_dssp SCEEEECTTCCEEEE
T ss_pred eEEEEECCCceEEEC
Confidence 688888765555443
No 63
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.76 E-value=0.018 Score=48.12 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=64.0
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee---ee----cCC-ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG---RE----QGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTC 101 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R~----~g~-~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~ 101 (507)
.+|++|. .|+.|.|.|+|.++ |. .|+ +++.=+.|.|.||. |.+++..+.... .+..||+
T Consensus 3 ~kI~dl~---------~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~--I~~tlW~~~~~~--~i~~Gdv 69 (97)
T 3e0e_A 3 YKISELM---------PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGS--IRGTLWNELADF--EVKKGDI 69 (97)
T ss_dssp ECGGGCC---------TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEE--EEEEEEGGGGGC--CCCTTCE
T ss_pred eEHHHCC---------CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCc--EEEEEECCcccc--ccCCCCE
Confidence 4677775 35789999999876 33 221 35777889999984 999988775432 5899999
Q ss_pred EEEEEEEeCCCCCCcceeEEEEeEEEEeeCC
Q 010544 102 VYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 102 V~V~G~v~~~~~g~~~~~El~v~~i~vls~a 132 (507)
|.|.|.+.... +.+||.+.+...+.+|
T Consensus 70 v~i~g~v~~~~----~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 70 AEVSGYVKQGY----SGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEEC------CEEEEEEEEEEEECC
T ss_pred EEEEEEEEEcC----CeEEEEECCCcEEEEC
Confidence 99999987654 4899999998887765
No 64
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.69 E-value=0.016 Score=53.07 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=62.5
Q ss_pred CEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc----hhcccCCCCcEEEEEEEEeCCCCCCcceeEEEE
Q 010544 48 RQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA----DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (507)
Q Consensus 48 ~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~----~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v 123 (507)
+.|+|.|.|.+++... +...+.|-|+||. .|.|++..+.. .....+..|++|.|.|.+..-. ++.+|.+
T Consensus 48 ~~V~IvGiVv~~~~~~--~~~~ytIDD~TG~-~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr----~~rqI~~ 120 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE--GKHVLTVDDCSGM-VLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR----SEVELIA 120 (159)
T ss_dssp CEEEEEEEEEEEEEET--TEEEEEEECSSSC-EEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSS----SSCEEEE
T ss_pred EEEEEEEEEEEEEEeC--CEEEEEEecCCCC-eEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeC----CEEEEEE
Confidence 4699999999998887 6788899999984 69999876641 1233578999999999998754 3789999
Q ss_pred eEEEEeeC
Q 010544 124 QKVVDVGM 131 (507)
Q Consensus 124 ~~i~vls~ 131 (507)
+++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99999886
No 65
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=96.16 E-value=0.031 Score=47.94 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=61.7
Q ss_pred ceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEE
Q 010544 29 RVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGML 108 (507)
Q Consensus 29 r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v 108 (507)
.++++++.. ...+..|+|.|.|.+.-..- + ..++|++|. |+|-++.+... ...+++++-|.|.|.|
T Consensus 25 ~~TV~~a~~------~~Dd~~V~L~G~Iv~~~~~d--~---Y~F~D~TG~--I~VeId~~~w~-g~~v~p~~~Vri~Gev 90 (109)
T 1nnx_A 25 VTTVESAKS------LRDDTWVTLRGNIVERISDD--L---YVFKDASGT--INVDIDHKRWN-GVTVTPKDTVEIQGEV 90 (109)
T ss_dssp CCCHHHHTT------SCSSEEEEEEEEEEEEEETT--E---EEEEETTEE--EEEECCGGGST-TCCCCTTSCEEEEEEE
T ss_pred eEeHHHHhh------CcCCCeEEEEEEEEEEeCCC--e---EEEECCCcc--EEEEEChhhcC-CcccCCCCEEEEEEEE
Confidence 367888763 35688999999997543222 3 445999984 99998877521 3468999999999999
Q ss_pred eCCCCCCcceeEEEEeEEEEeeC
Q 010544 109 KNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 109 ~~~~~g~~~~~El~v~~i~vls~ 131 (507)
-+.- ...||.|..|+++.+
T Consensus 91 Dkd~----~~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 91 DKDW----NSVEIDVKQIRKVNP 109 (109)
T ss_dssp EEET----TEEEEEEEEEEEC--
T ss_pred CCCC----CceEEEEEEEEEccC
Confidence 8643 257999999998753
No 66
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=96.11 E-value=0.044 Score=54.09 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=68.5
Q ss_pred ccccceehhhhhcCCC--CCCCCCC---CEEEEEEEEEeeeecCCceeEEEEEEcCCC-CceEEEEEeCCcch---hccc
Q 010544 25 QFSDRVLIKSILTRPD--GGAGLAG---RQVRVGGWVKTGREQGKGSFAFLEVNDGSC-PANLQVIVDKDVAD---LGQL 95 (507)
Q Consensus 25 ~~~~r~~i~~i~~~~~--~~~~~~g---~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg-~~~IQvVv~~~~~~---~~~~ 95 (507)
+-...++||+|+.+.. ..=...| ..|++.|+|.++...+ .-.-+.|.|+|| . |.+.+...... -...
T Consensus 44 ~~l~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~--~~~~~~L~D~TG~~--I~~k~W~~~~~~~~~~~~ 119 (270)
T 2pi2_A 44 QHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAP--TNIVYKIDDMTAAP--MDVRQWVDTDDTSSENTV 119 (270)
T ss_dssp CCCEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECS--SEEEEEEECSSSSC--EEEEEECC-------CCC
T ss_pred CceEEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEecc--ceEEEEEECCCCCE--EEEEEEcCcCcccchhhc
Confidence 3446799999996411 0000112 3699999999997776 455577999998 5 89988754321 1245
Q ss_pred CCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeC
Q 010544 96 VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 96 L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~ 131 (507)
+..|++|.|.|.+..-. +...|.+..|..+..
T Consensus 120 ~~~G~yVrV~G~v~~f~----g~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 120 VPPETYVKVAGHLRSFQ----NKKSLVAFKIMPLED 151 (270)
T ss_dssp CCTTCEEEEEEEEEEET----TEEEEEEEEEEECSC
T ss_pred CCCCCEEEEEEEEEecC----CeeEEEEEEEEecCC
Confidence 78999999999998654 367788888777765
No 67
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=95.61 E-value=0.045 Score=55.94 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=49.3
Q ss_pred ceeeEeechhhhHHHH-hh-c----c-CcEEEEeeccccCCCCCCCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Q 010544 302 RQAFLTVSGQLQVETY-AC-A----V-SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCD 373 (507)
Q Consensus 302 ~~~yL~~S~Ql~le~l-~~-g----~-~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d~~dlm~~~E~li~~i~~ 373 (507)
...||....+..+=.+ .. + . -|+-.+|+|||.|.+++--.+-+|+|+|+-. |...++..+..|+++..+-.
T Consensus 142 ~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~ae~ 219 (346)
T 3mf2_A 142 ADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRAQA 219 (346)
T ss_dssp EEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHHHH
T ss_pred CCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHHHH
Confidence 3456766665544322 21 1 1 3666699999999987777777999999855 56788888888888865443
No 68
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=95.51 E-value=0.026 Score=59.27 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=29.5
Q ss_pred HHHhhccCcEEEEeeccccCCCCCCCCccccccccc
Q 010544 315 ETYACAVSNVYTFGPTFRAEHSHTSRHLAEFWMVEP 350 (507)
Q Consensus 315 e~l~~g~~rVfeI~p~FRaE~~~t~rHl~EFtmLE~ 350 (507)
+++..+..|+|++|.|||.+.. +..|.|+|.|+|-
T Consensus 126 ~~l~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~eg 160 (415)
T 3cmq_A 126 DLLHAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEA 160 (415)
T ss_dssp HHHHTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEE
T ss_pred HHHHHCCCCEEEeeeEEeccch-hhhhhHHhcCCCc
Confidence 4455566799999999999987 8899999999983
No 69
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=95.20 E-value=0.075 Score=56.35 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=33.9
Q ss_pred cC-cEEEEeeccc---cCCCCCCCC----ccccccccccccCCCHHHHHHHHHHHHHHHHHH
Q 010544 321 VS-NVYTFGPTFR---AEHSHTSRH----LAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (507)
Q Consensus 321 ~~-rVfeI~p~FR---aE~~~t~rH----l~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~ 374 (507)
+. +++|||+||| ||-+ + || .-||+|.|++. |.+.++..+..+.++......
T Consensus 162 LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~~~~~~~ 220 (454)
T 1g5h_A 162 LPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWLRHRLLW 220 (454)
T ss_dssp SCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-EeCHhhHHHHHHHHHHHHHHH
Confidence 44 8999999999 6865 3 33 45999999985 778888777777666554443
No 70
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=95.13 E-value=0.048 Score=57.94 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=33.3
Q ss_pred cEEEEeeccccCC--CCCCCC----ccccccccccccCCCHHHHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEH--SHTSRH----LAEFWMVEPEMAFSDLKDDMNCAEAYVKFMCDW 374 (507)
Q Consensus 323 rVfeI~p~FRaE~--~~t~rH----l~EFtmLE~E~af~d~~dlm~~~E~li~~i~~~ 374 (507)
++.|||+|||+|. + +.+| .-||+|.|++. |.+-++..+..+.++..+...
T Consensus 175 ~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~~~~ 230 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHRLQW 230 (459)
T ss_dssp EEEEEEEEECCC-----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeecccccc-cCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHHHHH
Confidence 6899999999994 3 3332 25999999984 777766666666666555443
No 71
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=95.05 E-value=0.096 Score=45.13 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=55.7
Q ss_pred CEEEEEEEEEee---e----ecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEE-EEEeCCCCCCccee
Q 010544 48 RQVRVGGWVKTG---R----EQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-GMLKNPPEGTKQKI 119 (507)
Q Consensus 48 ~~V~V~GwV~~i---R----~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~-G~v~~~~~g~~~~~ 119 (507)
..|.+.|.|.++ | +.|++++.=+.|.|.||. |.+.+..... ..+..|++|.|. |.+..-+ |.+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~--I~~tlW~~~~---~~~~~G~vv~i~~g~v~~~~----g~~ 83 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR--VKLTLWGKHA---GSIKEGQVVKIENAWTTAFK----GQV 83 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE--EEEEEEGGGT---TCCCTTCEEEEEEEEEEEET----TEE
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE--EEEEEECChh---hcCCCCCEEEEEeEEEEEeC----CEE
Confidence 368999999876 4 233225777889999984 9998887643 357899999999 8887643 479
Q ss_pred EEEEeEEEEeeCC
Q 010544 120 ELRVQKVVDVGMV 132 (507)
Q Consensus 120 El~v~~i~vls~a 132 (507)
+|.+.+...+.++
T Consensus 84 qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 84 QLNAGSKTKIAEA 96 (119)
T ss_dssp EEEECTTCEEEEC
T ss_pred EEEECCCEEEEEc
Confidence 9999875555444
No 72
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=94.90 E-value=0.38 Score=40.87 Aligned_cols=87 Identities=13% Similarity=0.092 Sum_probs=63.2
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeeee--cCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEE-E
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGRE--QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVE-G 106 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~--~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~-G 106 (507)
.+|+||. ..++.|.+.|+|.++-. .++ ....+.|.|.||. |-+++..+. ....+..|++|.|. |
T Consensus 6 ~kI~dl~--------~~~~~v~v~~~V~~~~~~~~~~-~~~~~~l~DeTG~--I~~t~W~~~--~~~~~~~G~~V~i~n~ 72 (109)
T 2kbn_A 6 TKIVDIV--------ENGQWANLKAKVIQLWENTHES-ISQVGLLGDETGI--IKFTIWKNA--ELPLLEQGESYLLRSV 72 (109)
T ss_dssp CCTTTCC--------STTCEEEEEEEEEEEEECCCSS-EEEEEEEECTTCC--EEEEEEGGG--CCCCCCTTCEEEEEEE
T ss_pred eEHHHCC--------CCCCcEEEEEEEEEeEcCCCCe-EEEEEEEECCCCe--EEEEEECcc--cccccCCCCEEEEEEE
Confidence 4566764 13678999999988733 332 4556889999986 999988743 13468999999999 6
Q ss_pred EEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 107 MLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 107 ~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
.+..-+ |.++|.+.+...+.+.+
T Consensus 73 ~v~~~~----G~~~L~v~~~~~I~~~~ 95 (109)
T 2kbn_A 73 VVGEYN----DRFQVQVNKNSSIEKLS 95 (109)
T ss_dssp EEEEET----TEEEEEECSSSEEEECS
T ss_pred EEEEEC----CEEEEEECCceEEEECC
Confidence 776644 47999998776666544
No 73
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=94.58 E-value=0.024 Score=63.26 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-hCCcEEEccCeeecC
Q 010544 163 AAVARIRNALAYATHTFLQ-KQGFLYIHTPIITTS 196 (507)
Q Consensus 163 ~~~~~~rs~i~~~~r~fl~-~~~f~ev~TPil~~~ 196 (507)
-.-.+++..|...+|+.|. ..||.||.||+|++.
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~ 132 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPE 132 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccH
Confidence 4557899999999999998 679999999999985
No 74
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=94.07 E-value=0.11 Score=51.30 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=26.1
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCCC
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFSD 356 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~d 356 (507)
-|.|++|+|||.|.+.. -||+|+++|.-..+
T Consensus 71 ~R~~y~g~vfR~e~~~~----Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 71 IKVWYADFVYRYSGSDL----VAEYQLGLEKVPRN 101 (275)
T ss_dssp EEEECCEEEEEEETTEE----EEEEEEEEEEESCC
T ss_pred eEEEEeceEEecCCCCC----CeeeEeCEEEecCC
Confidence 38899999999998733 69999999997654
No 75
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=93.90 E-value=0.45 Score=45.54 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=58.3
Q ss_pred CEEEEEEEEEeeeecCCc------eeEEEEEEcCCCC-ceEEEEEeCCcc---hh-cccCCCCcEEEEEEEEeCCCC---
Q 010544 48 RQVRVGGWVKTGREQGKG------SFAFLEVNDGSCP-ANLQVIVDKDVA---DL-GQLVPTGTCVYVEGMLKNPPE--- 113 (507)
Q Consensus 48 ~~V~V~GwV~~iR~~g~~------kl~Fi~LrD~sg~-~~IQvVv~~~~~---~~-~~~L~~gs~V~V~G~v~~~~~--- 113 (507)
+.|+|.|.|..++..-+. ...|+.|-|.||. ..|.|.++.... .. ......|.+|.|+|.+..-..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~ 165 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSIN 165 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccc
Confidence 579999999998655421 3589999999985 246666654321 01 012458999999999976431
Q ss_pred -CCcceeEEEEeEEEEeeCC
Q 010544 114 -GTKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 114 -g~~~~~El~v~~i~vls~a 132 (507)
.+.-.-||+++++.+++..
T Consensus 166 ~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 166 VSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp TTSCCCEEEEEEEEEEEESS
T ss_pred cccccceEEEEEEEEEeccC
Confidence 0111469999999999863
No 76
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.74 E-value=0.51 Score=39.84 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=60.7
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee-----eecCC-ceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG-----REQGK-GSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVY 103 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i-----R~~g~-~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~ 103 (507)
++|+||.. ....|.+.|.|.++ ++.|+ +.+.=+.|.|.||. |.+.+..+. +..|++|.
T Consensus 4 ~kI~dl~p--------g~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~--I~~tlW~~~------l~~Gdvv~ 67 (106)
T 2k75_A 4 VKIRDVSL--------STPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTAR--IRISSFGKQ------LQDSDVVR 67 (106)
T ss_dssp CCSTTCCT--------TCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCE--EEEEEESSC------CCTTEEEE
T ss_pred EEHHHcCC--------CCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCe--EEEEEEcCc------cCCCCEEE
Confidence 45667641 23458888888764 23441 12667889999984 888887763 88999999
Q ss_pred EE-EEEeCCCCCCcceeEEEEeEEEEeeCCCCCCCCC
Q 010544 104 VE-GMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPI 139 (507)
Q Consensus 104 V~-G~v~~~~~g~~~~~El~v~~i~vls~a~~~~~Pl 139 (507)
|. |.+..-. |.++|.+.+...+.+.+ ...|+
T Consensus 68 i~ng~v~~~~----g~~~L~v~~~~~I~~~~-~~~~~ 99 (106)
T 2k75_A 68 IDNARVAQFN----GYLSLSVGDSSRIESVN-VNIPL 99 (106)
T ss_dssp EEEEEEEEET----TEEEEEECTTSEEEECC-SCCCC
T ss_pred EEeeEEeEEC----CEEEEEECCcEEEEECC-CCCcc
Confidence 99 8776543 47999998766666554 33444
No 77
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.11 Score=44.43 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=64.6
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee---ee----cCCceeEEEEEEcCCCCceEEEEEeCCcch-hcccCCCCcE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVAD-LGQLVPTGTC 101 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R~----~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~-~~~~L~~gs~ 101 (507)
+.|++|.. -...++|+|||.++ |. .|.|++.=++|.|.+| .|++++..+..+ |...|..|++
T Consensus 5 ~~Is~L~p--------~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~v 74 (114)
T 1ynx_A 5 FAIEQLSP--------YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKFNEILQEGKV 74 (114)
T ss_dssp CCGGGCCT--------TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHHHHHSCSSSE
T ss_pred EEHHHCCC--------CCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHHHhhcccCcE
Confidence 45666642 12358999999854 21 2334788899999998 599999776543 5567899999
Q ss_pred EEEEEE-EeCCCCC---CcceeEEEEeEEEEeeCCC
Q 010544 102 VYVEGM-LKNPPEG---TKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 102 V~V~G~-v~~~~~g---~~~~~El~v~~i~vls~a~ 133 (507)
+.|.|- |+..... ..+++||....-..+.+|.
T Consensus 75 y~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 75 YYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp EEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred EEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 999874 4443211 2468999888777777663
No 78
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=92.76 E-value=0.066 Score=57.81 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=40.5
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
|+|+||+|||.+..-+..|.+||+|++..+... ++.|++..++.++..+
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 899999999986532556899999999998874 6888988888888755
No 79
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=91.11 E-value=0.14 Score=55.39 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=40.2
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
|+|++|+|||.+...+..|.+||.||+.-+... ++.|+...+|.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 899999999986531345999999999988775 6889988888888765
No 80
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.85 E-value=0.16 Score=55.69 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=41.1
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
-|+|+||+|||.+..-+..|.+||.||+.-+... |+.|+...+|.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3899999999976532557999999999988774 6899999999888765
No 81
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.76 E-value=0.16 Score=55.70 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=41.1
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
-|+|+||+|||.+..-+..|.+||.||+.-+... |+.|+...+|.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3899999999976532557999999999988774 6899999999888765
No 82
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.70 E-value=0.17 Score=55.74 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=41.1
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
-|+|+||+|||.+..-+..|.+||.||+.-+... |+.|+...+|.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3899999999976532557999999999988774 6899999999888765
No 83
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=90.51 E-value=0.18 Score=55.67 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=41.1
Q ss_pred CcEEEEeeccccCCCCCCCCccccccccccccCC--CHHHHHHHHHHHHHHH
Q 010544 322 SNVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAFS--DLKDDMNCAEAYVKFM 371 (507)
Q Consensus 322 ~rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af~--d~~dlm~~~E~li~~i 371 (507)
-|+|+||+|||.+..-+..|.+||.||+.-+... |+.|+...+|.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3899999999976532557999999999988774 6899999999888765
No 84
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=89.78 E-value=2.4 Score=36.75 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=48.8
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEE
Q 010544 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRV 123 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v 123 (507)
+..|+.|++-|+|.+++..| +.+ .|..+.| +.++|.++... ...+ +.+|+|.|+|... ..|.+
T Consensus 19 ~fvgk~VrivGkV~~~~~~g--~~~--~l~s~Dg-~~Vtv~l~~p~---~~~l--~~~vEViG~V~~~-------~tI~~ 81 (121)
T 3kdf_A 19 QFIDKPVCFVGRLEKIHPTG--KMF--ILSDGEG-KNGTIELMEPL---DEEI--SGIVEVVGRVTAK-------ATILC 81 (121)
T ss_dssp GGTTCEEEEEEEEEEECTTS--SEE--EEECTTS-CEEEEECSSCC---SSCC--CSEEEEEEEECTT-------SCEEE
T ss_pred hhCCCeEEEEEEEEEEcCCC--CEE--EEEeCCC-CEEEEEeCCCC---Cccc--CcEEEEEEEECCC-------CeEEE
Confidence 57899999999999998777 333 3444433 25888776632 1223 5599999999742 34777
Q ss_pred eEEEEeeC
Q 010544 124 QKVVDVGM 131 (507)
Q Consensus 124 ~~i~vls~ 131 (507)
..+..++.
T Consensus 82 ~~~~~fg~ 89 (121)
T 3kdf_A 82 TSYVQFKE 89 (121)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 77777765
No 85
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=89.39 E-value=0.92 Score=39.07 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=40.7
Q ss_pred EEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCCC
Q 010544 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 81 IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a~ 133 (507)
|+||+..+.....+.|..|+-|.|+|.+..... ....++|++++|+.|+...
T Consensus 49 i~vv~~Gk~AE~~~~l~kGs~V~VeGrL~trs~-~G~kl~l~a~~Ie~l~~~~ 100 (115)
T 3fhw_A 49 ISAVALGDLALLLADTPLGTEMQVQGFLAPARK-DSVKVKLHLQQARRIAGSM 100 (115)
T ss_dssp EEEEEETHHHHHHTTCCTTCEEEEEEEEEESST-TCSSEEEEEEEEEECCCSC
T ss_pred EEEEEEhHHHHhhhccCCCCEEEEEEEEEECCC-CCCEEEEEEEEEEEcCCCC
Confidence 888888765443467999999999999986532 2267999999999998753
No 86
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=88.69 E-value=0.71 Score=44.18 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=64.8
Q ss_pred cceehhhhhcCCCCCCCCCCCEEEEEEEEEee---ee----cCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCC
Q 010544 28 DRVLIKSILTRPDGGAGLAGRQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTG 99 (507)
Q Consensus 28 ~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i---R~----~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~g 99 (507)
.-+.|++|.. -...++|+|||.++ |. .|.|++.=+.|.|.+| .|++++..+.. .|...|..|
T Consensus 7 ~~~~I~~L~p--------~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~~~~~l~~G 76 (246)
T 1jmc_A 7 KVVPIASLTP--------YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVDKFFPLIEVN 76 (246)
T ss_dssp CBCCGGGCCT--------TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHHHHGGGCCTT
T ss_pred ceEEHHHCCC--------CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC--eEEEEEChHHHHHhhhhcccC
Confidence 3456777752 23367999999865 32 2334677788999998 59999987654 356679999
Q ss_pred cEEEEEEE-EeCCCC---CCcceeEEEEeEEEEeeCCC
Q 010544 100 TCVYVEGM-LKNPPE---GTKQKIELRVQKVVDVGMVD 133 (507)
Q Consensus 100 s~V~V~G~-v~~~~~---g~~~~~El~v~~i~vls~a~ 133 (507)
+++.+.+- |+.... ...+.+||....-..+.++.
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEcc
Confidence 99999874 333211 12468999887655555553
No 87
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=88.36 E-value=1.5 Score=47.78 Aligned_cols=47 Identities=2% Similarity=0.004 Sum_probs=34.6
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccC--CCHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF--SDLKDDMNCAEAYVKF 370 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af--~d~~dlm~~~E~li~~ 370 (507)
|+||+|+|||.+.. +..|.+|+.++..-+.. .++.++.-.++.++..
T Consensus 473 rlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 473 KLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp EEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 79999999998765 56788899999876554 3577776666655543
No 88
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=88.27 E-value=2.1 Score=48.39 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=36.4
Q ss_pred cEEEEeeccccCCCCCCCCccccccccccccC-------------CCHHHHHHHHHHHHHHH
Q 010544 323 NVYTFGPTFRAEHSHTSRHLAEFWMVEPEMAF-------------SDLKDDMNCAEAYVKFM 371 (507)
Q Consensus 323 rVfeI~p~FRaE~~~t~rHl~EFtmLE~E~af-------------~d~~dlm~~~E~li~~i 371 (507)
|+||||+|||.+.. +..| +||.+|..=+.. .|+.|+...+|.++..+
T Consensus 573 rlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 573 RLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 89999999996543 2246 899999865444 57899999999888765
No 89
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=88.24 E-value=3.2 Score=43.11 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=58.0
Q ss_pred CCCEEEEEEEEEee-eecCCceeEEEEEEcCCCCceEEEEEeCCcc---hhcccCCCCcEEEEEEEEeCCCCCCcceeEE
Q 010544 46 AGRQVRVGGWVKTG-REQGKGSFAFLEVNDGSCPANLQVIVDKDVA---DLGQLVPTGTCVYVEGMLKNPPEGTKQKIEL 121 (507)
Q Consensus 46 ~g~~V~V~GwV~~i-R~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~---~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El 121 (507)
....++|.|.|.+. +.... +=.|+.|.|+++ .|.|++=.-.. +....|..||.|.|.|.++. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~------g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK------D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETT-TEEEEEEEETTE--EEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET------T--EE
T ss_pred cCceEEEEEEEecCcEeccC-ceEEEEEEcCCC--EEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC------C--EE
Confidence 56789999999987 44432 578899999865 59888744221 24567889999999999865 2 69
Q ss_pred EEeEEEEeeCC
Q 010544 122 RVQKVVDVGMV 132 (507)
Q Consensus 122 ~v~~i~vls~a 132 (507)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999999764
No 90
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=87.87 E-value=0.55 Score=55.37 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=48.0
Q ss_pred CCCCEEEEEEEEEeeeecC--C-ceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 45 LAGRQVRVGGWVKTGREQG--K-GSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~~g--~-~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
..|+.|+|+|.|.++|..+ + ++++|+.|.|.+|. +.|++-++.. .+...|..+.+|.|.|+|.... .+.
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~--~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-----~~~ 1112 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGA--LEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-----ELR 1112 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEE--EEEC-------------CTTCEEEEEEEEC----------C
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCC--EEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-----CcE
Confidence 3578899999998875432 1 14999999999985 9998877653 2455688999999999997542 367
Q ss_pred EEEeEEEEeeCC
Q 010544 121 LRVQKVVDVGMV 132 (507)
Q Consensus 121 l~v~~i~vls~a 132 (507)
|.++++.-++.+
T Consensus 1113 l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1113 VLAQAVWTLEEV 1124 (1220)
T ss_dssp EEEEEEEEHHHH
T ss_pred EEEeeeecHHHH
Confidence 888888877653
No 91
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=87.86 E-value=7 Score=34.58 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=52.9
Q ss_pred CCCCCEEEEEEEEE--eeeec-CCceeEEEEEEc-CCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCccee
Q 010544 44 GLAGRQVRVGGWVK--TGREQ-GKGSFAFLEVND-GSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKI 119 (507)
Q Consensus 44 ~~~g~~V~V~GwV~--~iR~~-g~~kl~Fi~LrD-~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~ 119 (507)
...|+.++|.|.|. ++.+. ....+.|.. .| +.. .|.|+...-.++ ..+-|.-|-|+|.+....
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~v-tD~~~~--~v~V~Y~GilPD---lFrEGqgVVa~G~l~~~g------- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQFAV-HDSLGG--EILVTYDDLLPD---LFREGQGIVAQGVLGEDG------- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEEEE-ECTTCC--CEEEEECSCCTT---SCCSSSEEEEEEEECSTT-------
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEEEE-EcCCCC--EEEEEECCCCCc---cccCCCeEEEEEEECCCC-------
Confidence 46789999999996 45443 222688765 77 543 599998876543 467899999999996532
Q ss_pred EEEEeEEEEeeCCCCCCCCCCC
Q 010544 120 ELRVQKVVDVGMVDPAKYPIPK 141 (507)
Q Consensus 120 El~v~~i~vls~a~~~~~Pl~~ 141 (507)
.++++ +||.+|+ +.|.-++
T Consensus 96 ~F~A~--eVLaKhd-ekY~p~e 114 (136)
T 1j6q_A 96 KLAAT--EVLAKHD-ENYMPPE 114 (136)
T ss_dssp SEEEE--EEECCC---------
T ss_pred eEEEE--EEEecCC-CCCCCHH
Confidence 16666 6899997 6675433
No 92
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.49 E-value=3.3 Score=35.46 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=40.1
Q ss_pred CCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCC
Q 010544 44 GLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNP 111 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~ 111 (507)
+..|+.|++-|+|.+.+. + . +.|....+ +.|+|.++... .+..+.+|+|.|++...
T Consensus 15 ~~~g~~VrivGkV~~~~g-~----~-~~l~s~d~-~~Vtv~l~~~~-----~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N----T-LLMQTSDL-GNVEIAMTPDS-----DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T----E-EEEECTTS-CEEEEECCSSC-----CGGGCSEEEEEEEECTT
T ss_pred hhCCCeEEEEEEEeeeCC-C----E-EEEEeCCC-CEEEEEeCCCC-----CcccCcEEEEEEEEcCC
Confidence 578999999999999884 3 2 44564433 25777766543 23468999999999854
No 93
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=85.33 E-value=5.4 Score=35.28 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=56.2
Q ss_pred CCCCCEEEEEEEEE--eeeec-CCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeE
Q 010544 44 GLAGRQVRVGGWVK--TGREQ-GKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 44 ~~~g~~V~V~GwV~--~iR~~-g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~E 120 (507)
...|+.++|.|.|. ++.+. ....+.|.. .|+.. .|.|+...-.++ ..+-|.-|-|+|.+.... .
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~v-tD~~~--~v~V~Y~GilPD---lFrEGqgVVa~G~l~~~g-------~ 91 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTFTI-YDAEG--SVDVSYEGILPD---LFREGQGVVVQGELEKGN-------H 91 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEEEE-ECSSC--EEEEEEESCCCT---TCCTTSEEEEEEEECSSS-------E
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEEEE-EeCCc--EEEEEECCCCCc---cccCCCeEEEEEEECCCC-------e
Confidence 45789999999997 45433 222688765 78754 699998876543 467899999999996421 2
Q ss_pred EEEeEEEEeeCCCCCCCC
Q 010544 121 LRVQKVVDVGMVDPAKYP 138 (507)
Q Consensus 121 l~v~~i~vls~a~~~~~P 138 (507)
+.++ +||.+|+ +.|.
T Consensus 92 F~A~--eVLAKhd-ekYm 106 (136)
T 1sr3_A 92 ILAK--EVLAKHD-ENYT 106 (136)
T ss_dssp EEES--SCBCCSC-CCCC
T ss_pred EEEE--EEEecCC-CCCC
Confidence 5665 5899997 5665
No 94
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=84.46 E-value=2.2 Score=40.19 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 170 s~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.++.+.+|+.|...||.||-|-.+++.
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~ 33 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRA 33 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECG
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCH
Confidence 356788999999999999999999875
No 95
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=84.15 E-value=13 Score=33.00 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=51.6
Q ss_pred ccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEE
Q 010544 27 SDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEG 106 (507)
Q Consensus 27 ~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G 106 (507)
..|+.-+-|- +..|+.|+|-|+|.++-..|+ . +.|+...+ ..|+|.++... . -..+-+|+|.|
T Consensus 30 ~pRVN~s~L~-------~fvGk~VriVGkV~~~~~~G~--~--~~l~s~Dg-~~VtV~l~~pL---~--~~~~~~VEViG 92 (142)
T 2pi2_E 30 RSRINAGMLA-------QFIDKPVCFVGRLEKIHPTGK--M--FILSDGEG-KNGTIELMEPL---D--EEISGIVEVVG 92 (142)
T ss_dssp CEEECGGGGG-------GSTTCEEEEEEEEEEECTTSS--E--EEEECTTS-CEEEEECSSCC---S--SCCCSEEEEEE
T ss_pred cceECHHHHH-------hhCCCEEEEEEEEeEEcCCCC--E--EEEEeCCC-cEEEEEeCCCC---C--ccCCCEEEEEE
Confidence 4456655554 568999999999998844552 2 34555444 25777765421 1 13477999999
Q ss_pred EEeCCCCCCcceeEEEEeEEEEeeC
Q 010544 107 MLKNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 107 ~v~~~~~g~~~~~El~v~~i~vls~ 131 (507)
+|... ..|.+..+.-++.
T Consensus 93 ~V~~~-------~tI~~~~~~~fGd 110 (142)
T 2pi2_E 93 RVTAK-------ATILCTSYVQFKE 110 (142)
T ss_dssp EECTT-------SCEEEEEEEECCC
T ss_pred EECCC-------CcEEEEEEEecCC
Confidence 99542 3366666666654
No 96
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=82.96 E-value=4.1 Score=38.24 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 170 NALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 170 s~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
.++.+.+|+.|...||.||-|-.+++.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~ 33 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAG 33 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEG
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCH
Confidence 357788999999999999999999875
No 97
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=82.76 E-value=6.1 Score=35.32 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEE
Q 010544 47 GRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKV 126 (507)
Q Consensus 47 g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i 126 (507)
=+.|.+.|-|... ..| . +.|+|+||. +-+-.-.+.+.-..-+..|.+|.|.|.+.... .+-.|.+.++
T Consensus 58 ~s~VWmQG~VV~~-~~g--~---~~LdDgTG~--~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~~s----~eP~i~AvKm 125 (150)
T 3mxn_B 58 LAAVWMQGRVVMA-DRG--E---ARLRDPSGD--FSVRGLERVPRGRPCLVPGKYVMVMGVVQACS----PEPCLQAVKM 125 (150)
T ss_dssp CSEEEEEEEEEEE-ETT--E---EEEEETTEE--EEEECGGGSCCCSCCCSTTCEEEEEEEEEECS----SSCEEEEEEE
T ss_pred eEEEEEEeEEEEe-CCC--e---EEEECCCce--EEEeeccccCCCCcccCCCCEEEEEEEEEecC----CCceEEEEEe
Confidence 4579999999986 555 2 679999985 33321122111012378999999999998754 2678899888
Q ss_pred EEeeC
Q 010544 127 VDVGM 131 (507)
Q Consensus 127 ~vls~ 131 (507)
.-||.
T Consensus 126 ~DLS~ 130 (150)
T 3mxn_B 126 TDLSD 130 (150)
T ss_dssp EECCS
T ss_pred eeCCC
Confidence 88886
No 98
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=81.90 E-value=4.4 Score=34.33 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=35.8
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i~vls~a 132 (507)
++|++-.+... ..+.|..||.|.|+|.+.... .| ....+||.+++|++|+..
T Consensus 52 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 52 VNCTLWRKTAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77777655432 335689999999999997542 23 224589999999999764
No 99
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=80.51 E-value=2.9 Score=35.12 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=36.9
Q ss_pred EEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEee
Q 010544 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVG 130 (507)
Q Consensus 81 IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls 130 (507)
++||+-.+... ...|..|+-|.|+|.+...... ...+.||+++|+.+.
T Consensus 55 i~vv~~gk~Ae-~~~l~KG~~v~veGrL~~rs~~-~~~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 55 IPARILGRQAE-EWQYRQGDCATVEGFLAQKSRR-SLMPMLRIQNIKEYK 102 (103)
T ss_dssp EEEEEEHHHHH-HSTTCTTCEEEEEEEEEESSSS-CCCEEEEEEEEEECC
T ss_pred EEEEEEhHHhh-hhccCCCCEEEEEEEEEECccC-CccEEEEEEEEEEcC
Confidence 67777665544 4459999999999999876643 348999999998763
No 100
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=80.31 E-value=1.9 Score=45.15 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=57.5
Q ss_pred CEEEEEEEEEee---ee----cCCceeEEEEEEcCCCCceEEEEEeCCcc-hhcccCCCCcEEEEEEE-EeCCCC---CC
Q 010544 48 RQVRVGGWVKTG---RE----QGKGSFAFLEVNDGSCPANLQVIVDKDVA-DLGQLVPTGTCVYVEGM-LKNPPE---GT 115 (507)
Q Consensus 48 ~~V~V~GwV~~i---R~----~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~~~~~L~~gs~V~V~G~-v~~~~~---g~ 115 (507)
..++|.|||.++ |. .|.|++.-++|.|.+| .|++++..+.. .|...|..|+++.|.+- |+.... ..
T Consensus 14 ~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~~~~~y~~~ 91 (444)
T 4gop_C 14 NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG--EIKATGFNDAVDRFYPLLQENHVYLISKARVNIAKKQFSNL 91 (444)
T ss_dssp CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEETHHHHHHTTTCCTTCEEEEESCEEEECCGGGCSC
T ss_pred cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC--EEEEEEeHHHHHHHHHheecCCEEEEcCCEEEecCCccccC
Confidence 357999999753 42 1233788889999998 59999988754 36677999999999874 333321 12
Q ss_pred cceeEEEEeEEEEeeCC
Q 010544 116 KQKIELRVQKVVDVGMV 132 (507)
Q Consensus 116 ~~~~El~v~~i~vls~a 132 (507)
.+.+||....-..+.++
T Consensus 92 ~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 92 QNEYEITFENSTEIEEC 108 (444)
T ss_dssp CCSEEEEECTTCEEEEC
T ss_pred CCCEEEEEcCCcEEEEc
Confidence 46799988754444444
No 101
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=79.89 E-value=4.2 Score=33.93 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=34.1
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC--CCCcceeEEEEeEEEEeeC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP--EGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~--~g~~~~~El~v~~i~vls~ 131 (507)
++|++-.+... ..+.|..|+.|.|+|.+.... .|... .||++++++.|+.
T Consensus 50 ~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHHHHHHhhCCCCCEEEEEEEEEeccCCCCCEE-EEEEEEEEEECcC
Confidence 77777766433 345689999999999998762 22223 9999999999864
No 102
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=78.22 E-value=7.3 Score=35.07 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=50.9
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEE------EcC-CCC-----ceEEEEEeCCcch-hcccCCCCcEEEEEEEEeC
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEV------NDG-SCP-----ANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~L------rD~-sg~-----~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~ 110 (507)
..|.|.|+|.. +|....| .++-+.| +|. +|. .-+.|++-.+... ..+.|..|+.|.|+|.+..
T Consensus 9 N~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeG~L~~ 88 (158)
T 3tqy_A 9 NKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIEGSLRT 88 (158)
T ss_dssp EEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEEEEEEe
Confidence 35788888865 4544321 2332322 122 121 1267777765433 3355899999999999976
Q ss_pred CC----CCC-cceeEEEEeEEEEeeCC
Q 010544 111 PP----EGT-KQKIELRVQKVVDVGMV 132 (507)
Q Consensus 111 ~~----~g~-~~~~El~v~~i~vls~a 132 (507)
.. .|. ...+||.+++|++|...
T Consensus 89 ~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 89 RKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred eeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 42 231 23589999999999763
No 103
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=72.38 E-value=5.3 Score=29.84 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHH
Q 010544 234 AAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKL 276 (507)
Q Consensus 234 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
+.+..|++.|+.|..+|+++...+.|+.++.++..|+..+...
T Consensus 4 ~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~~ 46 (57)
T 1fyj_A 4 VLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEK 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999998766655
No 104
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=70.12 E-value=15 Score=41.52 Aligned_cols=28 Identities=14% Similarity=0.027 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEccCeeecC
Q 010544 169 RNALAYATHTFLQKQGFLYIHTPIITTS 196 (507)
Q Consensus 169 rs~i~~~~r~fl~~~~f~ev~TPil~~~ 196 (507)
...+.+.+|+.|...||.|+-|-.+++.
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~ 518 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDP 518 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECT
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCH
Confidence 4567788999999999999999888875
No 105
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=69.12 E-value=14 Score=33.16 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=35.9
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... ..+.|..|+.|.|+|.+.... .| +...+||.+++|.+|+..
T Consensus 65 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 65 FRIVTFGRLAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEECHHHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 67776654432 345689999999999997643 12 234589999999999763
No 106
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=65.14 E-value=23 Score=31.47 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=57.5
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEeee----------ecC-------CceeEEEEEEcCCCCceEEEEEeCCcchh
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTGR----------EQG-------KGSFAFLEVNDGSCPANLQVIVDKDVADL 92 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR----------~~g-------~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~ 92 (507)
++|+||.. ..+.|.|.|+|-.+- ..| .++++=+.|-|.||. |-+++..+..
T Consensus 17 ~kI~dL~p--------g~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~--I~ftlW~e~~-- 84 (145)
T 1wjj_A 17 VKVEQLKP--------GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC--ILFTARNDQV-- 84 (145)
T ss_dssp CCSTTCCT--------TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE--EEEEECTTHH--
T ss_pred eEHHHcCC--------CCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE--EEEEEecCCc--
Confidence 46778752 233478888886542 112 236888899999985 8888877642
Q ss_pred cccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCC
Q 010544 93 GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 93 ~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a 132 (507)
..+..||+|.+.+-...--. |.++|.+.+.--+.+.
T Consensus 85 -~~l~~Gd~v~i~na~v~~~~---G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 85 -DLMKPGATVILRNSRIDMFK---GTMRLGVDKWGRIEAT 120 (145)
T ss_dssp -HHTCTTCEEEEEEEEEEEET---TEEEEEECTTCCBCCC
T ss_pred -CcCCCCCEEEEeccEEEeEC---CEEEEEECCCEEEEEC
Confidence 34789999999875433222 4789988765444443
No 107
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=64.49 E-value=51 Score=27.63 Aligned_cols=78 Identities=22% Similarity=0.154 Sum_probs=48.2
Q ss_pred CEEEEEEEEEe---eeecCCc--eeEEEEEE-c------CCCCceEEEEEeCCcchh-cccCCCCcEEEEEEEEeCCCC-
Q 010544 48 RQVRVGGWVKT---GREQGKG--SFAFLEVN-D------GSCPANLQVIVDKDVADL-GQLVPTGTCVYVEGMLKNPPE- 113 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~--kl~Fi~Lr-D------~sg~~~IQvVv~~~~~~~-~~~L~~gs~V~V~G~v~~~~~- 113 (507)
..|.+.|+|.+ +|...+| .++=+.|. + .+.+ +.|++-.+.... .+.|..||-|.|+|.+....-
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~f--i~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPAR--LKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEE--EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEE--EEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 46888999965 4654432 24333332 1 2223 788887765432 356899999999999976432
Q ss_pred ---C-CcceeEEEEeEEE
Q 010544 114 ---G-TKQKIELRVQKVV 127 (507)
Q Consensus 114 ---g-~~~~~El~v~~i~ 127 (507)
| +....||.+++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 2 2245888888764
No 108
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=63.97 E-value=60 Score=26.68 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=52.6
Q ss_pred CCCCCEEEEEEEEEe--eeec--CCceeEEEEEEcC--CCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcc
Q 010544 44 GLAGRQVRVGGWVKT--GREQ--GKGSFAFLEVNDG--SCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQ 117 (507)
Q Consensus 44 ~~~g~~V~V~GwV~~--iR~~--g~~kl~Fi~LrD~--sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~ 117 (507)
...++.++|.|-|.. +.+. +. .+.|.. .|+ .+ ..|.|.+..-.++ .++-|.-|-++|++.... +
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~-~v~F~v-tD~~~~~-~~v~V~Y~GilPD---lFrEGqgVV~~G~l~~~~----g 74 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAP-GVRFRL-EDKDNTS-KTVWVLYKGAVPD---TFKPGVEVIIEGGLAPGE----D 74 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSS-EEEEEE-ECSSCTT-CEEEEEEESCCCT---TCCTTCEEEEEEEECTTC----S
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCC-EEEEEE-EcCCCCC-cEEEEEECCCCCc---cccCCCeEEEEEEEeCCC----C
Confidence 347889999999963 5433 32 688765 776 12 3699998886543 467899999999996411 1
Q ss_pred eeEEEEeEEEEeeCCC
Q 010544 118 KIELRVQKVVDVGMVD 133 (507)
Q Consensus 118 ~~El~v~~i~vls~a~ 133 (507)
.+.++ +||.||+
T Consensus 75 --~F~A~--evLaKh~ 86 (94)
T 2kct_A 75 --TFKAR--TLMTKCP 86 (94)
T ss_dssp --EEEEE--EEEESSC
T ss_pred --EEEEe--EEEEeCC
Confidence 25665 5888886
No 109
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=63.84 E-value=22 Score=35.25 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=51.3
Q ss_pred EEEEEEEEEe---eeecCCc-eeEEEEEE------cCCCC-----ceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC
Q 010544 49 QVRVGGWVKT---GREQGKG-SFAFLEVN------DGSCP-----ANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 49 ~V~V~GwV~~---iR~~g~~-kl~Fi~Lr------D~sg~-----~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~ 112 (507)
.|.|.|+|.. +|...+| .++-+.|. |..|. .-+.|++-.+... ..+ |..|+.|.|+|.+....
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~GrL~~~~ 209 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMGRLVNEG 209 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEEEEeeee
Confidence 5779999976 5653221 33333332 21120 1277777765433 346 99999999999997643
Q ss_pred ----CC-CcceeEEEEeEEEEeeC
Q 010544 113 ----EG-TKQKIELRVQKVVDVGM 131 (507)
Q Consensus 113 ----~g-~~~~~El~v~~i~vls~ 131 (507)
.| +...+||.+++|++|..
T Consensus 210 y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 210 WTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp CC------CEEEEEEEEEEEECCC
T ss_pred EECCCCcEEEEEEEEEEEEEEecc
Confidence 12 12368999999999975
No 110
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.91 E-value=12 Score=29.90 Aligned_cols=51 Identities=29% Similarity=0.403 Sum_probs=43.6
Q ss_pred CChhhHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHh
Q 010544 227 PSEADIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLE 277 (507)
Q Consensus 227 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (507)
+......+....|++-|+.|..+|.++...+.|+.++.++..|+..+...+
T Consensus 10 ~~~~~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~~t 60 (79)
T 2djv_A 10 AKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAE 60 (79)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHHhc
Confidence 345567788999999999999999999999999999999999986665553
No 111
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=62.75 E-value=28 Score=40.44 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=60.3
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee--eecCCc-eeEEEEEEcCCCCceEEEE-EeCCcc--hhcccCCCCcEEE
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG--REQGKG-SFAFLEVNDGSCPANLQVI-VDKDVA--DLGQLVPTGTCVY 103 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i--R~~g~~-kl~Fi~LrD~sg~~~IQvV-v~~~~~--~~~~~L~~gs~V~ 103 (507)
+.|++|.. ....|+|.|.|-.+ |..++| .+.-+.+.|.++. |.|. +.++.. .....|+.|++|.
T Consensus 8 ~~~~~~~~--------~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~--~~~k~f~~~~~~~~~~~~~~~g~~~~ 77 (1041)
T 3f2b_A 8 RRLETIVE--------EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS--ILVKMFSRDKEDAELMSGVKKGMWVK 77 (1041)
T ss_dssp BCGGGCCS--------CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE--EEEEEECSSHHHHHHHHTCCTTCEEE
T ss_pred ccHHHhhc--------ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC--EEEEEeecccchHHHHhcCCCCCEEE
Confidence 56667752 34579999999764 543322 5666788999864 7664 333321 2335689999999
Q ss_pred EEEEEeCCCCCCcceeEEEEeEEEEeeC
Q 010544 104 VEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 104 V~G~v~~~~~g~~~~~El~v~~i~vls~ 131 (507)
|.|.+....- .+++.+.+.+|..+.+
T Consensus 78 ~~g~~~~d~~--~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 78 VRGSVQNDTF--VRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEETT--TTEEEEEEEEEEEECC
T ss_pred EEEEEEeccC--CcceEEEeeeeEEecc
Confidence 9999987542 3477788888876654
No 112
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=62.45 E-value=19 Score=34.90 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=52.1
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEE-c---------CCCCceEEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN-D---------GSCPANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~Lr-D---------~sg~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~ 112 (507)
..|.|.|+|.+ +|...+| .++-+.|. + .+.+ ++|++-.+... .. .|..|+.|.|+|.+....
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~--~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~~~~ 205 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHF--LEVQAWRELAEWAS-ELRKGDGLLVIGRLVNDS 205 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEE--EEEEEEHHHHHHHT-TCCTTCEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEE--EEEEEEChHHHHhh-hcCCCCEEEEEEEEEeeE
Confidence 46889999976 4654221 33433332 2 1223 77777765432 34 899999999999987642
Q ss_pred ----CCC-cceeEEEEeEEEEeeC
Q 010544 113 ----EGT-KQKIELRVQKVVDVGM 131 (507)
Q Consensus 113 ----~g~-~~~~El~v~~i~vls~ 131 (507)
.|. ...+||.+++|.+|..
T Consensus 206 ~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 206 WTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EECTTSCEEEEEEEEEEEEECCCC
T ss_pred EECCCCCEEEEEEEEEEEEEECcc
Confidence 221 2358999999998875
No 113
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=62.02 E-value=53 Score=27.63 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCEEEEEEEEEe---eeecCCceeEEEEEE-------cCCCCceEEEEEeCCcchhcccCCCCcEEEEEEEEeC-C----
Q 010544 47 GRQVRVGGWVKT---GREQGKGSFAFLEVN-------DGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKN-P---- 111 (507)
Q Consensus 47 g~~V~V~GwV~~---iR~~g~~kl~Fi~Lr-------D~sg~~~IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~-~---- 111 (507)
...|.+.|+|.+ .|..-. +..|.... +.+.+ |-|++..+..... .+..|+-|.|.|.+.. .
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~-G~~v~~f~lAV~R~~~~~Df--i~ivvw~klAe~~-~~~kG~~v~v~G~lrsy~~~~~ 86 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELY-GEKFFNFILEVPRLSETKDY--LPITISNRLFEGM-NLEVGTRVKIEGQLRSYNRKSP 86 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEET-TEEEEEEEEEEECTTSCEEE--EEEEEEGGGSTTC-CCCTTCEEEEEEEEEEEECC--
T ss_pred CCEEEEEEEECCCceEEEecC-CcEEEEEEEEeCCCCCCCcE--EEEEEEhHHhhHH-hhcCCCEEEEEEEEEecceEEC
Confidence 456999999965 233222 12332221 22223 6777766543322 2458999999999953 2
Q ss_pred CCC-CcceeEEEEeEEEEeeC
Q 010544 112 PEG-TKQKIELRVQKVVDVGM 131 (507)
Q Consensus 112 ~~g-~~~~~El~v~~i~vls~ 131 (507)
+.| +..-+||.+++++.|+.
T Consensus 87 ~dG~~R~v~eV~a~~i~flde 107 (107)
T 4gs3_A 87 EEGKNKLILTVFARDISVVPE 107 (107)
T ss_dssp ------EEEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEEEEEEEccC
Confidence 112 22358999999998863
No 114
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=61.82 E-value=30 Score=30.33 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=37.9
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCCC-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPEG-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~g-~~~~~El~v~~i~vls~a 132 (507)
++||+..+... ..+.|..|+-|.|+|.+...... ....+.+++++|+.|+..
T Consensus 67 i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~~k 120 (134)
T 1v1q_A 67 MPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDSV 120 (134)
T ss_dssp EEEEEESTGGGGGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETTSC
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECcCC
Confidence 78888776543 34568999999999999865321 123577899999999753
No 115
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=59.65 E-value=35 Score=28.99 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=35.0
Q ss_pred EEEEEeC-Ccch-hcccCCCCcEEEEEEEEeCC----C--CC-CcceeEEEEe----EEEEeeC
Q 010544 81 LQVIVDK-DVAD-LGQLVPTGTCVYVEGMLKNP----P--EG-TKQKIELRVQ----KVVDVGM 131 (507)
Q Consensus 81 IQvVv~~-~~~~-~~~~L~~gs~V~V~G~v~~~----~--~g-~~~~~El~v~----~i~vls~ 131 (507)
+.|++-. +... ..+.|..|+.|.|+|.+... + .| .....||.++ ++++|+.
T Consensus 56 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 56 HRIVVYDQNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEECCHHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEchHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 7777766 4432 34568999999999998653 2 23 2246899997 8988875
No 116
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=58.80 E-value=36 Score=32.81 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=36.2
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC---C-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE---G-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~---g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... ..+.|..|+.|.|+|.+....- | +...+||.+++|.+|+..
T Consensus 54 ~~v~~~g~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 54 HRVRLLGRQAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEETHHHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEchHHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 67777765432 3456899999999999976431 2 223589999999999763
No 117
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=57.01 E-value=8.7 Score=33.52 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=36.6
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC----CCC-cceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EGT-KQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~----~g~-~~~~El~v~~i~vls~a 132 (507)
+.|++-.+... ..+.|..||.|.|+|.+.... .|. ...+||.+++|+.|...
T Consensus 51 ~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 51 IDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEcHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 77776655432 334589999999999987642 221 23589999999999753
No 118
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=55.28 E-value=22 Score=29.59 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=31.5
Q ss_pred EEEEEeCCcchhcccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEE
Q 010544 81 LQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVV 127 (507)
Q Consensus 81 IQvVv~~~~~~~~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~ 127 (507)
|+||+..+.......+..|+-|.|+|.+..... ....+=++++.++
T Consensus 50 i~vv~wGk~AE~~~~~~kGs~V~VeGrL~trs~-~s~~lvlhi~~~~ 95 (101)
T 3en2_A 50 IEALGAGKMASVLDRIAPGTVLECVGFLARKHR-SSKALVFHISGLE 95 (101)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEEEEEEEEECC-----CEEEEEEEEE
T ss_pred EEEEEEhHHHHHHhhcCCCCEEEEEEEEEeCcC-CCCeeEEEEeccc
Confidence 888888765443334789999999999986653 2345667777665
No 119
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=54.08 E-value=61 Score=26.76 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCCCCEEEEEEEEEeeeec-C-CceeEEEE-EEcCCCCceEEEEEeCCcch--hcccCCCCcEEEEEEEEeCCC
Q 010544 43 AGLAGRQVRVGGWVKTGREQ-G-KGSFAFLE-VNDGSCPANLQVIVDKDVAD--LGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 43 ~~~~g~~V~V~GwV~~iR~~-g-~~kl~Fi~-LrD~sg~~~IQvVv~~~~~~--~~~~L~~gs~V~V~G~v~~~~ 112 (507)
++..|+-|.|+|-|..||+. | .|.-.||+ .||......-.+.++-+..+ -.+.|..|++..+.|.+...+
T Consensus 45 sdylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgshnsadvealsngsvativgqvhqvq 119 (133)
T 3f1z_A 45 SDYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSHNSADVEALSNGSVATIVGQVHQVQ 119 (133)
T ss_dssp HHHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGGGHHHHTTCCTTSEEEEEEECCCCC
T ss_pred hhhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCCcchhhHhhcCCceeeEeeeeeeee
Confidence 35689999999999998654 3 23456665 67765321122333322221 235688999999999987654
No 120
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=52.44 E-value=68 Score=29.93 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=33.0
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCCC----C-CcceeEEEEeEEEE
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPPE----G-TKQKIELRVQKVVD 128 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~~----g-~~~~~El~v~~i~v 128 (507)
+.|++-.+... +.+.|.+|+.|.|+|.+....- + +...+||.|++|..
T Consensus 55 i~VvawgklAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 55 LTCSVWRQAAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEEhHHHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 77777665432 3456899999999999986432 2 23468888887764
No 121
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=50.24 E-value=14 Score=27.84 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=32.4
Q ss_pred HHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHH
Q 010544 238 VIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLA 274 (507)
Q Consensus 238 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (507)
.|++-|+.|..+|+++...+.|+.++..+..||..+.
T Consensus 5 ~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~ 41 (59)
T 1d2d_A 5 KIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYK 41 (59)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999875443
No 122
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=43.02 E-value=26 Score=30.23 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=34.9
Q ss_pred EEEEEeC-Ccch-hcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEEEEeeCC
Q 010544 81 LQVIVDK-DVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 81 IQvVv~~-~~~~-~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i~vls~a 132 (507)
+.|++-. +... ..+.|..|+.|.|+|.+.... .| ....+||.+++|++|+..
T Consensus 69 ~~v~~wg~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 69 HRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEECSTTHHHHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEchHHHHHHHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 5666655 2332 345689999999999998653 12 124589999999999864
No 123
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=42.92 E-value=1.1e+02 Score=29.74 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=45.6
Q ss_pred CCCEEEEEEEEEeee----ecCCceeEEEEEEcCCCCceEEEEEeCC-cchhcccCCCCcEEEEEEEEeCC
Q 010544 46 AGRQVRVGGWVKTGR----EQGKGSFAFLEVNDGSCPANLQVIVDKD-VADLGQLVPTGTCVYVEGMLKNP 111 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR----~~g~~kl~Fi~LrD~sg~~~IQvVv~~~-~~~~~~~L~~gs~V~V~G~v~~~ 111 (507)
.|+.|.|.|.|...+ ..|++-++-+.|.|.+.. .|+|.+=.. ...+......||+|.+...-..+
T Consensus 14 ~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~-gl~v~iF~~~~~~LP~v~~~GDII~l~~vki~~ 83 (294)
T 1xjv_A 14 GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV-KLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQV 83 (294)
T ss_dssp SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC-EEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEE
T ss_pred CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC-CEEEEEECCChHHCCCCCCCCCEEEEEEEEEEE
Confidence 478899999997653 356667888999998754 588765433 32233334899999999865544
No 124
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=42.56 E-value=65 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchh--cccCCCCcEEEEE
Q 010544 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL--GQLVPTGTCVYVE 105 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~--~~~L~~gs~V~V~ 105 (507)
.|+ .+.|.|.++...| +|++|.++ +...+..+.... .+.++.||.|.|.
T Consensus 5 ~G~--iv~G~V~~v~~~G----~fV~l~~~-----~~Gllh~sel~~~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 5 PGK--FYKGVVTRIEKYG----AFINLNEQ-----VRGLLRPRDMISLRLENLNVGDEIIVQ 55 (80)
T ss_dssp TTC--EEEEEEEEEETTE----EEEEEETT-----EEEEECGGGCSSCCGGGCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCE----EEEEECCC-----CEEEEEHHHCCcccceeeCCCCEEEEE
Confidence 455 3889999999887 89999763 667776554211 1357899998765
No 125
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=41.92 E-value=97 Score=27.83 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=30.1
Q ss_pred EEEEEeCCcch-hcccCCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEE
Q 010544 81 LQVIVDKDVAD-LGQLVPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKV 126 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i 126 (507)
+.|++-.+... ..+.|..|+.|.|+|.+.... .| +...+||.+++|
T Consensus 55 ~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 55 LRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred EEEEEehHHHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 77777655432 345689999999999997642 22 123467766644
No 126
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=40.80 E-value=31 Score=32.10 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=48.8
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEE------cC-CCC-----ceEEEEEeCC-cchh-cccCCCCcEEEEEEEEe
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN------DG-SCP-----ANLQVIVDKD-VADL-GQLVPTGTCVYVEGMLK 109 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~Lr------D~-sg~-----~~IQvVv~~~-~~~~-~~~L~~gs~V~V~G~v~ 109 (507)
..|.|.|+|.+ +|...+| .++-+.|. |. +|. .-+.|++-.+ .... .+.|..|+.|.|+|.+.
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~VeGrL~ 106 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQ 106 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEEEEEEE
Confidence 46888898866 5654321 23333321 11 110 1277777664 3322 35689999999999997
Q ss_pred CCC----CC-CcceeEEEEe----EEEEeeC
Q 010544 110 NPP----EG-TKQKIELRVQ----KVVDVGM 131 (507)
Q Consensus 110 ~~~----~g-~~~~~El~v~----~i~vls~ 131 (507)
... .| +...+||.++ +|++|+.
T Consensus 107 trswedkdG~kr~~tEVva~~~~~~i~fL~s 137 (193)
T 3pgz_A 107 TRKWQDQNGNDRYTTEIVLQKYRGELQMLDG 137 (193)
T ss_dssp EEEEECTTSCEEEEEEEEECTTCCEEEECC-
T ss_pred EEEeECCCCCEEEEEEEEEEeccCceEECcC
Confidence 542 22 2245788887 5788875
No 127
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=38.70 E-value=44 Score=28.79 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=44.4
Q ss_pred CEEEEEEEEEe---eeecCCceeEEEEEE------cC-CC------CceEEEEEeCCcch-hcccCCCCcEEEEEEEEeC
Q 010544 48 RQVRVGGWVKT---GREQGKGSFAFLEVN------DG-SC------PANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLKN 110 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~kl~Fi~Lr------D~-sg------~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~~ 110 (507)
..|.|.|+|.+ +|...+|.++-+.|. |. +| ..-+.|++-.+... ..+.|..||.|.|+|.+..
T Consensus 16 N~V~LiGrL~~dPelr~t~~G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~~ 95 (128)
T 4dam_A 16 IMICAVGNVATTPVFRDLANGPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQGRLKV 95 (128)
T ss_dssp CEEEEEEEECSCCEEEEETTEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECCCCEEEEcCCCCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 46888888864 454443233333331 21 11 01256665544322 3456899999999999866
Q ss_pred CCC---C-CcceeEEEEeEEE
Q 010544 111 PPE---G-TKQKIELRVQKVV 127 (507)
Q Consensus 111 ~~~---g-~~~~~El~v~~i~ 127 (507)
..- | +...+||.+++|-
T Consensus 96 ~~~dkdG~~r~~~ev~a~~vg 116 (128)
T 4dam_A 96 RTDVREGQSRTSADIDAVAIG 116 (128)
T ss_dssp EEEEETTEEEEEEEEEEEEEE
T ss_pred eEEcCCCCEEEEEEEEEEEEE
Confidence 532 2 1234777776654
No 128
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=38.31 E-value=20 Score=40.24 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=51.0
Q ss_pred CCCCEEEEEEEEEeeee--cCCceeEEEEEEcCCCCceEEEEEeCCcchhcccCCC--CcEEEEEEEEeCCCCCCcceeE
Q 010544 45 LAGRQVRVGGWVKTGRE--QGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPT--GTCVYVEGMLKNPPEGTKQKIE 120 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~--~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~~~~L~~--gs~V~V~G~v~~~~~g~~~~~E 120 (507)
..|+.|+|.|.|.+... .|+++..=+.+.|++|. +++++=... -..+.+.. |..+.|.|++...+. .+.++
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~f~~~-~~~~~~~~~~g~~~~~~G~~~~~~~--~~~~~ 237 (780)
T 1gm5_A 163 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVH--VPLKWFNQD-YLQTYLKQLTGKEVFVTGTVKSNAY--TGQYE 237 (780)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCC--EEEEECSCC-TTHHHHHTTCSSCEEEEEEECSCCT--TSSCC
T ss_pred CCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCce--EEEEEECcH-HHHhhCccCCCCEEEEEEEEEEccC--CCcEE
Confidence 45889999999987532 23224555778899985 888764321 12345677 999999999976310 12345
Q ss_pred EEEeEEEEe
Q 010544 121 LRVQKVVDV 129 (507)
Q Consensus 121 l~v~~i~vl 129 (507)
+.--++.+.
T Consensus 238 ~~~p~~~~~ 246 (780)
T 1gm5_A 238 IHNAEVTPK 246 (780)
T ss_dssp EEEEEEECS
T ss_pred EEcCEEeec
Confidence 544445443
No 129
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=37.05 E-value=79 Score=27.02 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=35.2
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
+|+ .+.|.|.++...| +|+.|.++ ++..+..+... ....+..||.|.|.
T Consensus 7 vG~--iv~G~V~~i~~~G----~FV~l~~~-----~~Glihisel~~~~~~~~~~~~~vGd~V~vk 61 (130)
T 2k4k_A 7 VGS--VYTGKVTGLQAYG----AFVALDEE-----TQGLVHISEVTHGFVKDINEHLSVGDEVQVK 61 (130)
T ss_dssp TTC--EEEEEEEEEETTE----EEEEEETT-----EEEEEEGGGTSSSCCSCGGGTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCCe----EEEEECCC-----cEEEEEHHHCCcccccCccccCCCCCEEEEE
Confidence 455 5789999998887 99999653 67777654421 12457889998765
No 130
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=34.45 E-value=39 Score=30.67 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=49.9
Q ss_pred CEEEEEEEEEe---eeecCCc-eeEEEEEE------c--------CCCCceEEEEEeCC-cch-hcccCCCCcEEEEEEE
Q 010544 48 RQVRVGGWVKT---GREQGKG-SFAFLEVN------D--------GSCPANLQVIVDKD-VAD-LGQLVPTGTCVYVEGM 107 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~g~~-kl~Fi~Lr------D--------~sg~~~IQvVv~~~-~~~-~~~~L~~gs~V~V~G~ 107 (507)
..|.|.|+|.+ +|....| .++-+.|. | .+.+ +.|++-.+ ... ..+.|..|+.|.|+|.
T Consensus 24 NkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~--i~vv~wg~~lAe~~~~~l~KG~~V~VeGr 101 (169)
T 3lgj_A 24 NKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEW--HSVVVFNPHFAKIALQYLHKGSKVYIEGK 101 (169)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEE--EEEEECCHHHHHHHHHHCCTTCEEEEEEE
T ss_pred eEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEE--EEEEEeCHHHHHHHHHhCCCCCEEEEEEE
Confidence 46888899865 5654322 23333221 1 1223 77777765 332 3456899999999999
Q ss_pred EeCCCC----C-CcceeEEEE----eEEEEeeCC
Q 010544 108 LKNPPE----G-TKQKIELRV----QKVVDVGMV 132 (507)
Q Consensus 108 v~~~~~----g-~~~~~El~v----~~i~vls~a 132 (507)
+....- | +...+||.+ .+|++|+..
T Consensus 102 L~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 102 LQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 976532 2 224578877 588988753
No 131
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=34.23 E-value=23 Score=31.14 Aligned_cols=84 Identities=19% Similarity=0.246 Sum_probs=50.5
Q ss_pred CEEEEEEEEEe---eeec--CCceeEEEEEE-cC------CC-----CceEEEEEeCCcch-hcccCCCCcEEEEEEEEe
Q 010544 48 RQVRVGGWVKT---GREQ--GKGSFAFLEVN-DG------SC-----PANLQVIVDKDVAD-LGQLVPTGTCVYVEGMLK 109 (507)
Q Consensus 48 ~~V~V~GwV~~---iR~~--g~~kl~Fi~Lr-D~------sg-----~~~IQvVv~~~~~~-~~~~L~~gs~V~V~G~v~ 109 (507)
..|.|.|+|.+ +|.. |+ .++-+.|. +. +| ..-+.|++-.+... ..+.|..||.|.|+|.+.
T Consensus 6 N~v~L~GrL~~dPelr~t~~G~-~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 84 (145)
T 1qvc_A 6 NKVILVGNLGQDPEVRYMPNGG-AVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLR 84 (145)
T ss_dssp EEEEEEEEESSCCEEECCSSSC-CEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEECCCCC-EEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEEEE
Confidence 35788888865 4543 32 33433332 11 01 11378887765433 335689999999999997
Q ss_pred CCC----CCC-cceeEE---EEeEEEEeeCC
Q 010544 110 NPP----EGT-KQKIEL---RVQKVVDVGMV 132 (507)
Q Consensus 110 ~~~----~g~-~~~~El---~v~~i~vls~a 132 (507)
... .|. ...+|| .+++|.+|...
T Consensus 85 ~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~ 115 (145)
T 1qvc_A 85 TRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 115 (145)
T ss_dssp EEEECSSSSCEEEEEEEECTTCEEEECCCCS
T ss_pred eeEEECCCCcEEEEEEEeeeEeCEEEEccCC
Confidence 642 221 234678 77888888753
No 132
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=29.86 E-value=14 Score=40.98 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhHHhhhccccchhhhhhhhHHHHHHHHHHHHHhhh
Q 010544 231 DIEAAKLVIKEKGEAVAKLKSDKAGREAISASVTELTKAKENLAKLEER 279 (507)
Q Consensus 231 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (507)
...+.++.+++.+..|+++|.++...++|++|+.+++++|.++..++..
T Consensus 9 ~l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~~ 57 (693)
T 2zt5_A 9 VLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELA 57 (693)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4456778899999999999999999999999999999998777766543
No 133
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=29.64 E-value=2.5e+02 Score=23.51 Aligned_cols=79 Identities=22% Similarity=0.258 Sum_probs=56.0
Q ss_pred cccceehhhhhcCCCCCCCCCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc--hhcccCCCCcEEE
Q 010544 26 FSDRVLIKSILTRPDGGAGLAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA--DLGQLVPTGTCVY 103 (507)
Q Consensus 26 ~~~r~~i~~i~~~~~~~~~~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~--~~~~~L~~gs~V~ 103 (507)
+++.+.+.+|-.| ..|.+|+.=|-|.+-. .| - +.|.+.. .++-++-+.. .. .+..|.+|-
T Consensus 6 ps~L~~Ls~lp~~------~~G~KVRFLGCV~sY~-tg--~---L~Le~~~----~~v~VDV~lvL~~l--~~~vGeWvN 67 (105)
T 3kf6_B 6 SAKLIFINQINDC------KDGQKLRFLGCVQSYK-NG--I---LRLIDGS----SSVTCDVTVVLPDV--SIQKHEWLN 67 (105)
T ss_dssp CCEECCGGGGGGS------CTTCEEEEEEEEEEEE-TT--E---EEEEETT----EEEEEECTTSCCSS--CCCTTCEEE
T ss_pred cceEeehhhccCC------CCCCEEEEEEEeeeec-cE--E---EEEccCC----cEEEEEHHHhhchh--eeecccEEE
Confidence 4567788888754 5799999999999987 66 3 4455432 5677776542 12 688999999
Q ss_pred EEEEEeCCCCCCcceeEEEEeEEEEeeC
Q 010544 104 VEGMLKNPPEGTKQKIELRVQKVVDVGM 131 (507)
Q Consensus 104 V~G~v~~~~~g~~~~~El~v~~i~vls~ 131 (507)
|.|.+.+. +.++-+-+-|.
T Consensus 68 VvGYir~~---------v~VqAl~lwsA 86 (105)
T 3kf6_B 68 IVGRKRQD---------GIVDVLLIRSA 86 (105)
T ss_dssp EEEEEEET---------TEEEEEEEEEC
T ss_pred EEEEEecC---------cEEEEEEEeec
Confidence 99999863 45555666554
No 134
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=29.20 E-value=86 Score=26.06 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=34.7
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchh-------cccCCCCcEEEEE
Q 010544 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL-------GQLVPTGTCVYVE 105 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~-------~~~L~~gs~V~V~ 105 (507)
..|+ .+.|.|.++...| +|+.|.++ +..++..+...+ ...+..||.|.|.
T Consensus 29 ~~G~--~~~G~V~~v~~~G----~FV~l~~~-----~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 29 PEGT--KLTGRVTNLTDYG----CFVEIEEG-----VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp CSSC--EEEEEEEEEETTE----EEEECSTT-----CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEECCE----EEEEECCC-----CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 4566 4889999999988 89999543 567776543211 2347889988765
No 135
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=28.48 E-value=36 Score=33.71 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=36.6
Q ss_pred EEEEEeCCcch-hccc-CCCCcEEEEEEEEeCCC----CC-CcceeEEEEeEEEEeeC
Q 010544 81 LQVIVDKDVAD-LGQL-VPTGTCVYVEGMLKNPP----EG-TKQKIELRVQKVVDVGM 131 (507)
Q Consensus 81 IQvVv~~~~~~-~~~~-L~~gs~V~V~G~v~~~~----~g-~~~~~El~v~~i~vls~ 131 (507)
+.|++..+... ..+. |..|+.|.|+|.+.... .| +...+||.+++|++|..
T Consensus 54 i~vv~~g~~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~ 111 (301)
T 1se8_A 54 HRVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGT 111 (301)
T ss_dssp EEEEEESHHHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSS
T ss_pred EEEEEEcHHHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeec
Confidence 77777765433 3456 89999999999997532 12 22358999999999976
No 136
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.73 E-value=1.2e+02 Score=24.63 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=35.0
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc-h------hcccCCCCcEEEEE
Q 010544 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA-D------LGQLVPTGTCVYVE 105 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~-~------~~~~L~~gs~V~V~ 105 (507)
..|+ .+.|.|.++...| +|++|.+... .+...+..+.. . ..+.++.||.|.|.
T Consensus 11 ~vG~--i~~G~V~~v~~fG----~FV~l~~~~~--~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 11 TIGD--IYNGKVTSIMQFG----CFVQLEGLRK--RWEGLVHISELRREGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp CTTC--EEEEEEEEECSSC----EEEEECSSSS--CCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEeccE----EEEEEcCCCC--CeEEEEEHHHCCCCcccCCcccEeCCCCEEEEE
Confidence 3566 5789999999988 8999975211 15667654432 1 11347788888765
No 137
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=26.69 E-value=1e+02 Score=28.13 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=31.7
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcchh------cccCCCCcEEEEE
Q 010544 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADL------GQLVPTGTCVYVE 105 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~~------~~~L~~gs~V~V~ 105 (507)
.|+ .+.|.|.++...| +|++|.+..+ +...+.-+...+ .+.++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~I~~fG----aFV~L~e~~g---~eGLvhiSels~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VED--VVMVNVRSIAEMG----AYVSLLEYNN---IEGMILLSELSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTC--EEEEEEEEECSSE----EEEEETTTTT---EEEEEEGGGC------------CTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE----EEEEEccCCC---cEEEEEHHHCCCcccCCHHHhcCCCCEEEEE
Confidence 455 5789999999988 8999964433 777776554221 1235566666554
No 138
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=26.03 E-value=1.2e+02 Score=27.54 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=32.1
Q ss_pred CCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcch------hcccCCCCcEEEEE
Q 010544 46 AGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVAD------LGQLVPTGTCVYVE 105 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~~------~~~~L~~gs~V~V~ 105 (507)
.|+ .+.|.|.++...| +|++|.+..+ +...+.-+... ..+.++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~i~~fG----aFV~L~e~~g---veGLvhiSels~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDD--IVMVNVQQIAEMG----AYVKLLEYDN---IEGMILLSELSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTC--EEEEEEEEEETTE----EEEEETTTTT---CEEEEECC--------CCCCCCCTTSEEEEE
T ss_pred CCC--EEEEEEEEEecce----EEEEEcCCCC---cEEEEEHHHcCCcccCCHHHcCCCCCEEEEE
Confidence 455 5789999999988 8999943333 56666654321 12335666666554
No 139
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=25.84 E-value=2.8e+02 Score=23.17 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCCEEEEEEEEEeeeec--CCce-eEEEEEEcCCCC-ceEEEEE--eCCcc---hhcccCCCCcEEEEEEEEeCCC
Q 010544 46 AGRQVRVGGWVKTGREQ--GKGS-FAFLEVNDGSCP-ANLQVIV--DKDVA---DLGQLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 46 ~g~~V~V~GwV~~iR~~--g~~k-l~Fi~LrD~sg~-~~IQvVv--~~~~~---~~~~~L~~gs~V~V~G~v~~~~ 112 (507)
.|..+++-|+|+.+..- +..+ .-|...-|+.+. ..=|.++ -.+.. ...+.|+.|++|.|.|+++..+
T Consensus 2 ~~sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 2 AGSNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp --CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred CccceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 36788999999999651 1112 234444444320 0011111 11110 1245689999999999999876
No 140
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=25.59 E-value=63 Score=26.59 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=32.7
Q ss_pred CCCCEEEEEEEEEeeeecCCceeEEEEEEcCCCCceEEEEEeCCcc------hhcccCCCCcEEEEE
Q 010544 45 LAGRQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVE 105 (507)
Q Consensus 45 ~~g~~V~V~GwV~~iR~~g~~kl~Fi~LrD~sg~~~IQvVv~~~~~------~~~~~L~~gs~V~V~ 105 (507)
..|+ .+.|.|.++...| +|+.|.++ +..++..... .....+..||.|.|.
T Consensus 30 ~~G~--iv~G~V~~v~~~G----~fV~l~~~-----~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 30 KKGA--IVTGKVTAVDAKG----ATVELADG-----VEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp CSSS--EEEEEEEEECSSC----EEEECSTT-----CBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred CCCC--EEEEEEEEEECCe----EEEEECCC-----CEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 3566 4789999999887 89999653 3444443321 112347889988765
No 141
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=24.23 E-value=2.2e+02 Score=24.15 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=41.9
Q ss_pred EEEEEcCCCCceEEE-EEeCCcchh--cccCCCCcEEEEEEEEeCCCCCCcceeEEEEeEEEEeeCC
Q 010544 69 FLEVNDGSCPANLQV-IVDKDVADL--GQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMV 132 (507)
Q Consensus 69 Fi~LrD~sg~~~IQv-Vv~~~~~~~--~~~L~~gs~V~V~G~v~~~~~g~~~~~El~v~~i~vls~a 132 (507)
=+.|.||.. .+|. ++.....++ ...|..+++|.+.=.....-. .+.--+.+.+++++.++
T Consensus 46 Rl~lSDG~~--~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~--~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 46 RLLMSDGLN--TLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLK--DGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEECSSE--EEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECS--SSCEEEEEEEEEEEECS
T ss_pred EEEEECcch--heeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEec--CCcEEEEEEeeEEeecc
Confidence 377899985 4998 887665333 245899999999766443321 02467888899999874
No 142
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=23.22 E-value=4.4e+02 Score=24.18 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=50.6
Q ss_pred eehhhhhcCCCCCCCCCCCEEEEEEEEEee----ee-cCC-ceeEEEEEEcCCC---CceEEEEE-eCCcchhcccCCCC
Q 010544 30 VLIKSILTRPDGGAGLAGRQVRVGGWVKTG----RE-QGK-GSFAFLEVNDGSC---PANLQVIV-DKDVADLGQLVPTG 99 (507)
Q Consensus 30 ~~i~~i~~~~~~~~~~~g~~V~V~GwV~~i----R~-~g~-~kl~Fi~LrD~sg---~~~IQvVv-~~~~~~~~~~L~~g 99 (507)
++|+++++ ....|+.|.|.|=|... |. .|+ .=.+-+.|.|.|. ...|.|.+ .++...+......|
T Consensus 30 ~~~r~~l~-----~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 30 QSIRSSQE-----LQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp ECHHHHTS-----CCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred EEHHHHHh-----hccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 67788773 34568899999999654 33 454 4577788899871 12366643 33322232223789
Q ss_pred cEEEEEEEEeCCCCC
Q 010544 100 TCVYVEGMLKNPPEG 114 (507)
Q Consensus 100 s~V~V~G~v~~~~~g 114 (507)
|+|.+...-...-.|
T Consensus 105 DIIlL~rvkiq~~~g 119 (187)
T 1qzg_A 105 QPLLLHQITLRSYRD 119 (187)
T ss_dssp CEEEEEEEEEEEETT
T ss_pred CEEEEEEEEEEEECC
Confidence 999999876655433
No 143
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=21.95 E-value=1.6e+02 Score=30.69 Aligned_cols=47 Identities=28% Similarity=0.239 Sum_probs=32.8
Q ss_pred cCcEEEEeeccccC-------C-CCCCCCccccccccccccCCCH--HHHHHHHHHHH
Q 010544 321 VSNVYTFGPTFRAE-------H-SHTSRHLAEFWMVEPEMAFSDL--KDDMNCAEAYV 368 (507)
Q Consensus 321 ~~rVfeI~p~FRaE-------~-~~t~rHl~EFtmLE~E~af~d~--~dlm~~~E~li 368 (507)
..|+=...+|.|+- + ..|.||.+=|-||=- .+|.|| ++.+..+-+++
T Consensus 58 ~~r~~~sQkCiR~gGKHnDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~Awe~L 114 (441)
T 3hy0_A 58 YSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN-FSFGDYFKLDAILFAWLLL 114 (441)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHH
T ss_pred CCCccccccceecCCCCCCHHhhCCCCccccceeeccc-cccchhhHHHHHHHHHHHh
Confidence 67888899999972 2 237899988888843 567776 45555544443
No 144
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=21.51 E-value=1.8e+02 Score=30.64 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=34.5
Q ss_pred cCcEEEEeeccccC-------C-CCCCCCccccccccccccCCCH--HHHHHHHHHHHH
Q 010544 321 VSNVYTFGPTFRAE-------H-SHTSRHLAEFWMVEPEMAFSDL--KDDMNCAEAYVK 369 (507)
Q Consensus 321 ~~rVfeI~p~FRaE-------~-~~t~rHl~EFtmLE~E~af~d~--~dlm~~~E~li~ 369 (507)
..|+-...+|.|+. + ..|.||.+=|-||=- .+|.|| ++.|..+-+++-
T Consensus 59 ~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGN-fSFGDYFK~eAI~~AwE~LT 116 (465)
T 1yfs_A 59 YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGN-FSFGDYFKKEAIEYAWEFVT 116 (465)
T ss_dssp CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEE-EESSSCCHHHHHHHHHHHHH
T ss_pred CCceeccccccccCCCcccHhhcCCCCCccchheeccc-cchhhhhHHHHHHHHHHHHH
Confidence 67888888999953 2 338899988888753 567786 667666666653
No 145
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.22 E-value=2e+02 Score=27.45 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred ccCCCCcEEEEEEEEeCCC
Q 010544 94 QLVPTGTCVYVEGMLKNPP 112 (507)
Q Consensus 94 ~~L~~gs~V~V~G~v~~~~ 112 (507)
..+.+||-|.|+|++...+
T Consensus 223 d~~~PGDrV~vtGI~~~~~ 241 (268)
T 2vl6_A 223 DSARPGDRVKVTGILDIKQ 241 (268)
T ss_dssp TSSCTTCEEEEEEEEEEEC
T ss_pred CcccCCCEEEEEEEEEEee
Confidence 4578999999999987654
Done!