Your job contains 1 sequence.
>010545
MMELQMENLVQRKCDSNEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQG
DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLP
ISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFE
NDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKW
GHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGE
PLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTF
ARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSN
IVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWS
WDKRYTKKDVYGQVWPRHFQLYAFQDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010545
(507 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150931 - symbol:TDP1 "tyrosyl-DNA phosphodies... 1744 1.1e-179 1
UNIPROTKB|E2REL5 - symbol:TDP1 "Uncharacterized protein" ... 688 5.3e-73 2
UNIPROTKB|Q9NUW8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 689 6.7e-73 2
MGI|MGI:1920036 - symbol:Tdp1 "tyrosyl-DNA phosphodiester... 674 3.3e-71 2
RGD|1309618 - symbol:Tdp1 "tyrosyl-DNA phosphodiesterase ... 668 1.1e-70 2
UNIPROTKB|F1MST1 - symbol:TDP1 "Uncharacterized protein" ... 670 2.3e-70 2
UNIPROTKB|F1NSQ5 - symbol:TDP1 "Uncharacterized protein" ... 657 2.3e-70 2
UNIPROTKB|F1SDA7 - symbol:LOC100625067 "Uncharacterized p... 665 2.9e-70 2
ZFIN|ZDB-GENE-090909-1 - symbol:tdp1 "tyrosyl-DNA phospho... 639 1.6e-69 2
UNIPROTKB|G3V2F4 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 693 2.7e-68 1
UNIPROTKB|E7EPD8 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 690 5.6e-68 1
UNIPROTKB|Q86TV8 - symbol:TDP1 "Full-length cDNA clone CS... 556 6.9e-59 2
WB|WBGene00018678 - symbol:F52C12.1 species:6239 "Caenorh... 398 7.5e-42 2
FB|FBgn0260817 - symbol:gkt "glaikit" species:7227 "Droso... 443 8.4e-42 1
UNIPROTKB|H0YJ44 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 421 1.8e-39 1
UNIPROTKB|G4N013 - symbol:MGG_06176 "Uncharacterized prot... 277 1.5e-36 3
ASPGD|ASPL0000004965 - symbol:AN5903 species:162425 "Emer... 230 5.7e-28 3
POMBASE|SPCP31B10.05 - symbol:tdp1 "tyrosyl-DNA phosphodi... 232 4.0e-27 3
UNIPROTKB|G3V2J6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 267 1.2e-22 1
UNIPROTKB|Q9BRS7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 250 9.3e-21 1
UNIPROTKB|G3V2U6 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 179 1.9e-11 1
UNIPROTKB|H0YJL7 - symbol:TDP1 "Tyrosyl-DNA phosphodieste... 159 7.9e-11 1
DICTYBASE|DDB_G0273869 - symbol:DDB_G0273869 "Tyrosyl-DNA... 113 9.4e-09 3
DICTYBASE|DDB_G0273125 - symbol:DDB_G0273125 "Tyrosyl-DNA... 113 9.4e-09 3
TAIR|locus:2183319 - symbol:AT5G07400 species:3702 "Arabi... 106 0.00047 3
>TAIR|locus:2150931 [details] [associations]
symbol:TDP1 "tyrosyl-DNA phosphodiesterase 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA]
InterPro:IPR000253 InterPro:IPR008984 InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CP002688 GO:GO:0006281
Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 HSSP:Q9NUW8 EMBL:AY150498 EMBL:FJ858738
IPI:IPI00525009 RefSeq:NP_197021.2 UniGene:At.27105
ProteinModelPortal:Q8H1D9 IntAct:Q8H1D9 PaxDb:Q8H1D9 PRIDE:Q8H1D9
EnsemblPlants:AT5G15170.1 GeneID:831369 KEGG:ath:AT5G15170
TAIR:At5g15170 InParanoid:Q8H1D9 OMA:CRAMPHI PhylomeDB:Q8H1D9
ProtClustDB:CLSN2690163 Genevestigator:Q8H1D9 Uniprot:Q8H1D9
Length = 605
Score = 1744 (619.0 bits), Expect = 1.1e-179, P = 1.1e-179
Identities = 328/490 (66%), Positives = 374/490 (76%)
Query: 12 RKCDSNEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYM 71
RK + + EA+ F +KLPSTFRLL V LP WANTSCVSI DVI+GD++ AILSNYM
Sbjct: 121 RKAEDDVEAIRRFCPPNEKLPSTFRLLSVDALPDWANTSCVSINDVIEGDVVAAILSNYM 180
Query: 72 VDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAM 131
VDIDWL+ ACP LA IP V+VIHGE DG E+++R KPANWILHKP LPISFGTHHSKA+
Sbjct: 181 VDIDWLMSACPKLANIPQVMVIHGEGDGRQEYIQRKKPANWILHKPRLPISFGTHHSKAI 240
Query: 132 LLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQN-NLSEECGFENDLIDYLSTL 190
L+YPRGVR++VHTANLIHVDWNNKSQGLWMQDFP KD + + + CGFE DLIDYL+ L
Sbjct: 241 FLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPWKDDDKDPPKGCGFEGDLIDYLNVL 300
Query: 191 KWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQ 250
KWPEF+ANLP G A VRLIASVPGYHTG +L KWGHMKLRT+LQ
Sbjct: 301 KWPEFTANLPGRGNVKINAAFFKKFDYSDATVRLIASVPGYHTGFNLNKWGHMKLRTILQ 360
Query: 251 ECTFEKGFKKSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVED 310
EC F++ F++SPL+YQFSSLGSLDEKW+AE EDKTPLG G+ LI+WPTVED
Sbjct: 361 ECIFDREFRRSPLIYQFSSLGSLDEKWLAEFGNSLSSGITEDKTPLGPGDSLIIWPTVED 420
Query: 311 VRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLAW 370
VRCSLEGYAAGNAIPSP KNV+K FLKKYWA+WKA H+ R RAMPHIKTF RYN QK+AW
Sbjct: 421 VRCSLEGYAAGNAIPSPLKNVEKPFLKKYWARWKADHSARGRAMPHIKTFTRYNDQKIAW 480
Query: 371 FLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA-KRHGCGFSCT-SNIVPSEIKS 428
FLLTS+NLSKAAWGALQKNNSQLMIRSYELGVL LPS K GC FSCT SN PS +K+
Sbjct: 481 FLLTSSNLSKAAWGALQKNNSQLMIRSYELGVLFLPSPIKTQGCVFSCTESN--PSVMKA 538
Query: 429 GSTETSQIQK-TKLVTLTWHGSSDAGASSXXXXXXXXXXXXXQRYSSEDVPWSWDKRYTK 487
+++K +KLVT+TW G D + YS EDVPWSWD+ Y+K
Sbjct: 539 KQETKDEVEKRSKLVTMTWQGDRDL---PEIISLPVPYQLPPKPYSPEDVPWSWDRGYSK 595
Query: 488 KDVYGQVWPR 497
KDVYGQVWPR
Sbjct: 596 KDVYGQVWPR 605
>UNIPROTKB|E2REL5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:AAEX03005923
RefSeq:XP_547950.2 Ensembl:ENSCAFT00000027726 GeneID:490828
KEGG:cfa:490828 Uniprot:E2REL5
Length = 609
Score = 688 (247.2 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 169/420 (40%), Positives = 235/420 (55%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 164 PFQFYLTRVSGIKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLIKQYPPEFRKK 223
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 224 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 283
Query: 147 NLIHVDWNNKSQGLWMQD-FPLKDQ-NNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 202
NLIH DW+ K+QG+W+ +P Q + S E F+ DLI YL +A L
Sbjct: 284 NLIHADWHQKTQGIWLSPLYPRMAQATHRSGESATHFKADLISYLMAYN----AAPLKEW 339
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQE--CTFEKGFKK 260
V LI S PG GS WGH +LR +L+E + KG +
Sbjct: 340 ------IDTIHEHDLSETNVYLIGSTPGRFQGSHKDNWGHFRLRKLLREHASSITKG-ES 392
Query: 261 SPLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSL 315
P+V QFSS+GS+ D KW+ +E E +TP PL +++P+VE+VR SL
Sbjct: 393 WPIVGQFSSIGSMGADDSKWLCSEFKESLVTLGKESRTPGKSAVPLHLIYPSVENVRTSL 452
Query: 316 EGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFL 372
EGY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + ++AWFL
Sbjct: 453 EGYPAGGSLPYSIQTAEKQNWLHSYFHKWMADTSGRSNAMPHIKTYMRSSPDFSQIAWFL 512
Query: 373 LTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 432
+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA F S V + SGS E
Sbjct: 513 VTSANLSKAAWGALEKNGAQLMIRSYELGVLFLPSA------FGLDSFKVKQKFFSGSKE 566
Score = 68 (29.0 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y ++D PW W+ YTK D +G +W
Sbjct: 582 YGNKDRPWIWNIPYTKAPDTHGNMW 606
>UNIPROTKB|Q9NUW8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0008219 "cell death" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000012 "single strand break repair"
evidence=IDA;IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] Reactome:REACT_216 InterPro:IPR010347 Pfam:PF06087
UniProt:Q9NUW8 GO:GO:0005634 GO:GO:0005737 GO:GO:0008219
GO:GO:0003690 GO:GO:0003697 GO:GO:0004527 GO:GO:0006302
GO:GO:0090305 GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR EMBL:AK001952 EMBL:DQ367843
EMBL:AL137128 EMBL:BC015474 EMBL:AF182002 EMBL:AF182003
IPI:IPI00655885 RefSeq:NP_001008744.1 RefSeq:NP_060789.2
UniGene:Hs.209945 PDB:1JY1 PDB:1MU7 PDB:1MU9 PDB:1NOP PDB:1QZQ
PDB:1RFF PDB:1RFI PDB:1RG1 PDB:1RG2 PDB:1RGT PDB:1RGU PDB:1RH0
PDBsum:1JY1 PDBsum:1MU7 PDBsum:1MU9 PDBsum:1NOP PDBsum:1QZQ
PDBsum:1RFF PDBsum:1RFI PDBsum:1RG1 PDBsum:1RG2 PDBsum:1RGT
PDBsum:1RGU PDBsum:1RH0 ProteinModelPortal:Q9NUW8 SMR:Q9NUW8
IntAct:Q9NUW8 MINT:MINT-3074488 STRING:Q9NUW8 PhosphoSite:Q9NUW8
DMDM:37999797 PaxDb:Q9NUW8 PRIDE:Q9NUW8 Ensembl:ENST00000335725
Ensembl:ENST00000393454 GeneID:55775 KEGG:hsa:55775 UCSC:uc001xxy.3
CTD:55775 GeneCards:GC14P090422 HGNC:HGNC:18884 MIM:607198
MIM:607250 neXtProt:NX_Q9NUW8 Orphanet:94124 PharmGKB:PA421
HOGENOM:HOG000067775 HOVERGEN:HBG061242 InParanoid:Q9NUW8
OrthoDB:EOG4NP736 PhylomeDB:Q9NUW8 SABIO-RK:Q9NUW8 BindingDB:Q9NUW8
ChEMBL:CHEMBL1075138 EvolutionaryTrace:Q9NUW8 GenomeRNAi:55775
NextBio:60841 ArrayExpress:Q9NUW8 Bgee:Q9NUW8 CleanEx:HS_TDP1
Genevestigator:Q9NUW8 GermOnline:ENSG00000042088
Length = 608
Score = 689 (247.6 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 162/395 (41%), Positives = 226/395 (57%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 163 PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 222
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 223 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 282
Query: 147 NLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 202
NLIH DW+ K+QG+W+ +P + D + S E F+ DLI YL P +
Sbjct: 283 NLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV- 341
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS- 261
V LI S PG GS WGH +L+ +L++ +S
Sbjct: 342 ---------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESW 392
Query: 262 PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLE 316
P+V QFSS+GSL DE KW+ +E E KTP PL +++P+VE+VR SLE
Sbjct: 393 PVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLE 452
Query: 317 GYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLL 373
GY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+
Sbjct: 453 GYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLV 512
Query: 374 TSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 408
TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 513 TSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 547
Score = 66 (28.3 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y S+D PW W+ Y K D +G +W
Sbjct: 581 YGSKDRPWIWNIPYVKAPDTHGNMW 605
>MGI|MGI:1920036 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10090
"Mus musculus" [GO:0000012 "single strand break repair"
evidence=ISO;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006281 "DNA repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO] InterPro:IPR010347 Pfam:PF06087
MGI:MGI:1920036 GO:GO:0005634 GO:GO:0004527 GO:GO:0090305
GO:GO:0000012 GO:GO:0017005 eggNOG:NOG274417 PANTHER:PTHR12415
HOGENOM:HOG000067775 HOVERGEN:HBG061242 EMBL:AK033868 EMBL:BC019804
IPI:IPI00222253 UniGene:Mm.312323 UniGene:Mm.487464
UniGene:Mm.488658 ProteinModelPortal:Q8BJ37 SMR:Q8BJ37
IntAct:Q8BJ37 STRING:Q8BJ37 PhosphoSite:Q8BJ37 PaxDb:Q8BJ37
PRIDE:Q8BJ37 InParanoid:Q8BJ37 CleanEx:MM_TDP1
Genevestigator:Q8BJ37 GermOnline:ENSMUSG00000021177 Uniprot:Q8BJ37
Length = 609
Score = 674 (242.3 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 163/396 (41%), Positives = 228/396 (57%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ A N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 164 PFQFYLTRVSGIKAKYNSKALHIKDILSPLFGTLVSSAQFNYCFDVDWLIKQYPPEFRKN 223
Query: 89 HVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ + + + KP AN L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 224 PILLVHGDKREAKADLHAQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 283
Query: 147 NLIHVDWNNKSQGLWMQD-FPLKDQ-NNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 202
NLI DW+ K+QG+W+ +P DQ ++ + E F+ DL YL+ P +
Sbjct: 284 NLIREDWHQKTQGIWLSPLYPRIDQGSHTAGESSTRFKADLTSYLTAYNAPPLQEWIDI- 342
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQEC--TFEKGFKK 260
V LI S PG GS WGH +LR +LQ + KG +
Sbjct: 343 ---------IQEHDLSETNVYLIGSTPGRFQGSHRDNWGHFRLRKLLQAHAPSTPKG-EC 392
Query: 261 SPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSL 315
P+V QFSS+GSL DE KW+ +E E + P PL +++P+VE+VR SL
Sbjct: 393 WPIVGQFSSIGSLGPDESKWLCSEFKDSLLALREEGRPPGKSAVPLHLIYPSVENVRTSL 452
Query: 316 EGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFL 372
EGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R + KLAWFL
Sbjct: 453 EGYPAGGSLPYSIQTAEKQRWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFL 512
Query: 373 LTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 408
+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 513 VTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 548
Score = 65 (27.9 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y S+D PW W+ Y K D +G +W
Sbjct: 582 YRSKDRPWIWNIPYVKAPDTHGNMW 606
>RGD|1309618 [details] [associations]
symbol:Tdp1 "tyrosyl-DNA phosphodiesterase 1" species:10116
"Rattus norvegicus" [GO:0000012 "single strand break repair"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IEA;ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase
activity" evidence=ISO;ISS] InterPro:IPR010347 Pfam:PF06087
RGD:1309618 GO:GO:0005634 GO:GO:0005737 GO:GO:0003690 GO:GO:0003697
GO:GO:0004527 GO:GO:0006302 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775
HOGENOM:HOG000067775 HOVERGEN:HBG061242 OrthoDB:EOG4NP736
EMBL:BC098739 IPI:IPI00367735 RefSeq:NP_001026827.1
UniGene:Rn.12661 ProteinModelPortal:Q4G056 SMR:Q4G056 STRING:Q4G056
PhosphoSite:Q4G056 PRIDE:Q4G056 Ensembl:ENSRNOT00000005167
GeneID:314380 KEGG:rno:314380 UCSC:RGD:1309618 InParanoid:Q4G056
NextBio:667547 Genevestigator:Q4G056 Uniprot:Q4G056
Length = 609
Score = 668 (240.2 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 162/396 (40%), Positives = 227/396 (57%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ A N+ + I+D++ G ++ + NY D++WL+ P +
Sbjct: 164 PFQFYLTRVSGIKAKYNSKALHIKDILSPLFGTLVSSAQFNYCFDVNWLIKQYPPEFRKK 223
Query: 89 HVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ + + + KP AN L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 224 PILLVHGDKREAKADLHAQAKPYANISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 283
Query: 147 NLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 202
NLI DW+ K+QG+W+ +P + N+ S E F+ DL YL P +
Sbjct: 284 NLIREDWHQKTQGIWLSPLYPRIYQGNHTSGESSTHFKADLTSYLMAYNAPPLQEWIDI- 342
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQEC--TFEKGFKK 260
V LI S PG GS WGH +LR +LQ + +G +
Sbjct: 343 ---------IQEHDLSETNVYLIGSTPGRFQGSHKDNWGHFRLRKLLQAHAPSAPRG-EC 392
Query: 261 SPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSL 315
P+V QFSS+GSL DE KW+ +E E +TP PL +++P+VE+VR SL
Sbjct: 393 WPVVGQFSSIGSLGPDESKWLCSEFKESLLAVREEGRTPGRSAVPLHLIYPSVENVRTSL 452
Query: 316 EGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFL 372
EGY AG ++P + +K +L Y+ KW A +GRS AMPHIKT+ R + KLAWFL
Sbjct: 453 EGYPAGGSLPYGIQTAEKQRWLHPYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKLAWFL 512
Query: 373 LTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 408
+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 513 VTSANLSKAAWGALEKNGAQLMIRSYELGVLFLPSA 548
Score = 66 (28.3 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y S+D PW W+ Y K D +G +W
Sbjct: 582 YGSKDRPWIWNIPYVKAPDTHGNMW 606
>UNIPROTKB|F1MST1 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017005 "3'-tyrosyl-DNA phosphodiesterase activity"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0005737 GO:GO:0003690 GO:GO:0003697 GO:GO:0006302
GO:GO:0000012 GO:GO:0017005 GeneTree:ENSGT00390000002211 KO:K10862
PANTHER:PTHR12415 OMA:WGHLRLR CTD:55775 EMBL:DAAA02030029
IPI:IPI00717294 RefSeq:NP_001180084.1 UniGene:Bt.26165
Ensembl:ENSBTAT00000017463 GeneID:517053 KEGG:bta:517053
NextBio:20872364 Uniprot:F1MST1
Length = 612
Score = 670 (240.9 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 166/419 (39%), Positives = 236/419 (56%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ NT + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 167 PFQFYLTRVSGIKPKYNTGALHIKDILSPLFGTLVSSAQFNYCFDVDWLIRQYPPEFRKK 226
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
VL++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 227 PVLLVHGDKREAKAHLLAEAKPYGNVTLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 286
Query: 147 NLIHVDWNNKSQGLWMQD-FP--LKDQNNLSEEC-GFENDLIDYLSTLKWPEFSANLPAH 202
NLI DW+ K+QG+W+ +P + + E F+ DLI YL+ +A L
Sbjct: 287 NLIREDWHQKTQGIWLSPLYPRIVHGTHGSGESATNFKADLISYLAAYN----AAPLKEW 342
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS- 261
V LIAS PG G+ WGH +LR +L+E +S
Sbjct: 343 ------IDTIQEHDLSETNVYLIASTPGRFQGNQKDNWGHFRLRKLLKEHASPMPKAESW 396
Query: 262 PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLE 316
P++ QFSS+GS+ DE KW+ +E E +T LG PL +++P+VE+VR SLE
Sbjct: 397 PVIGQFSSIGSMGADESKWLCSEFKESLVTLGKESRT-LGSAAPLHLIYPSVENVRTSLE 455
Query: 317 GYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLL 373
GY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + ++AWFL+
Sbjct: 456 GYPAGGSLPYSIQTAEKQNWLHSYFHKWSADTSGRSNAMPHIKTYLRPSPDFSQIAWFLV 515
Query: 374 TSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTE 432
TSANLSKAAWGAL+K+ +QLMIRSYELGVL LPSA F S V + SGS++
Sbjct: 516 TSANLSKAAWGALEKSGTQLMIRSYELGVLFLPSA------FGLDSFKVKQKFFSGSSQ 568
Score = 61 (26.5 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y D PW W+ Y K D +G +W
Sbjct: 585 YGDRDRPWIWNIPYVKAPDTHGNMW 609
>UNIPROTKB|F1NSQ5 [details] [associations]
symbol:TDP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000012 "single strand break repair" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
GO:GO:0003690 GO:GO:0003697 GO:GO:0006302 GO:GO:0000012
GO:GO:0017005 GeneTree:ENSGT00390000002211 PANTHER:PTHR12415
OMA:WGHLRLR EMBL:AADN02003623 IPI:IPI00587496
Ensembl:ENSGALT00000017359 Uniprot:F1NSQ5
Length = 602
Score = 657 (236.3 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 159/419 (37%), Positives = 232/419 (55%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L +V+G+ N+ + I+D++ G ++ + NY +D+ WL+ P +
Sbjct: 154 PFGFFLTKVRGIEQSYNSGALHIKDILSPLFGTLVSSAQFNYCIDVAWLVRQYPQEYRKK 213
Query: 89 HVLVIHGES-DGTLEHMKRNKP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HGE + E + + +P N + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 214 PLLIVHGEKRESKAELLAQARPFENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 273
Query: 147 NLIHVDWNNKSQGLWMQDF----PLKDQNNLSE-ECGFENDLIDYLSTLKWPEFSANLPA 201
NLI DW+ K+QG+W+ P ++ E E F++DLI YL P +
Sbjct: 274 NLIAEDWHQKTQGIWLSPLYPRLPQGSSDSAGESETNFKSDLISYLMAYSSPVLKEWIDL 333
Query: 202 HGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS 261
V L+ S PG + G +KWGH+KLR +L++ ++S
Sbjct: 334 ----------IREHDLSETRVYLLGSTPGRYQGIDKEKWGHLKLRKLLKDHASSIPAQES 383
Query: 262 -PLVYQFSSLGSLD---EKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSL 315
P+V QFSS+GSL KW+ +E L P+ +V+PTV +VR SL
Sbjct: 384 WPVVGQFSSIGSLGADGSKWLCSEFQESLVAAGSGVAALLKCDVPIHLVYPTVSNVRQSL 443
Query: 316 EGYAAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFAR--YNGQKLAWFL 372
EGY AG ++P + K +L Y+ KW A +GRS AMPHIKT+ R ++ QK+AWFL
Sbjct: 444 EGYPAGGSLPYSIQTAQKQLWLHSYFHKWSAEVSGRSHAMPHIKTYMRPSHDFQKIAWFL 503
Query: 373 LTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGST 431
+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA G+ + SE K +T
Sbjct: 504 VTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFGLDKGYFHVKGNMLSEGKDSAT 562
Score = 74 (31.1 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 470 QRYSSEDVPWSWDKRYTKK-DVYGQVW 495
+RY S+D PW W+ YT D +G +W
Sbjct: 573 ERYGSKDQPWIWNIPYTSAPDTHGNMW 599
>UNIPROTKB|F1SDA7 [details] [associations]
symbol:LOC100625067 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 PANTHER:PTHR12415 OMA:WGHLRLR
EMBL:CU633760 Ensembl:ENSSSCT00000002701 Uniprot:F1SDA7
Length = 607
Score = 665 (239.2 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 170/423 (40%), Positives = 236/423 (55%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + IRD++ G ++ + NY D+DWL+ P +
Sbjct: 162 PFQFYLTRVSGIKPKYNSGALHIRDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 221
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
VL++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 222 PVLLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 281
Query: 147 NLIHVDWNNKSQGLWMQDFPLKDQ----NNLSEECG--FENDLIDYLSTLKWPEFSANLP 200
NLIH DW+ K+QG+W+ PL + ++ S E F+ DLI YLS ++A
Sbjct: 282 NLIHADWHQKTQGIWLS--PLYQRIVPGSHRSGESATHFKADLISYLSA-----YNA--- 331
Query: 201 AHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQE--CTFEKGF 258
V LI S PG G WGH +LR +L+E + K
Sbjct: 332 --AALKEWIDTIQEHDLSETNVYLIGSTPGRFQGDQKDNWGHFRLRKLLKENGSSIPKA- 388
Query: 259 KKSPLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRC 313
+ P+V QFSS+ S+ DE KW+ +E E +TP G PL +++P+VE+VR
Sbjct: 389 ESWPVVGQFSSISSMGADESKWLCSEFKESLVTLGKESRTPGG-AVPLHLIYPSVENVRT 447
Query: 314 SLEGYA-AGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLA 369
SLEGY AG ++P + +K +L Y+ KW A+ +GRS AMPHIKT+ R + ++A
Sbjct: 448 SLEGYPEAGGSLPYSIQTAEKQTWLHSYFHKWSAATSGRSNAMPHIKTYMRPSPDFSQIA 507
Query: 370 WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSG 429
WFL+TSANLSKAAWGAL+KN SQLMIRSYELGVL LP+A F S V + SG
Sbjct: 508 WFLVTSANLSKAAWGALEKNGSQLMIRSYELGVLFLPAA------FGLDSFRVKQKFFSG 561
Query: 430 STE 432
S E
Sbjct: 562 SQE 564
Score = 65 (27.9 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y S+D PW W+ Y K D +G +W
Sbjct: 580 YGSKDRPWIWNIPYMKAPDTHGNMW 604
>ZFIN|ZDB-GENE-090909-1 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase 1"
species:7955 "Danio rerio" [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 ZFIN:ZDB-GENE-090909-1
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081
GeneTree:ENSGT00390000002211 KO:K10862 PANTHER:PTHR12415 CTD:55775
EMBL:BX005004 EMBL:BX927236 IPI:IPI00900849 RefSeq:XP_700174.2
UniGene:Dr.76799 Ensembl:ENSDART00000108712
Ensembl:ENSDART00000150149 GeneID:571485 KEGG:dre:571485
NextBio:20890577 Uniprot:E7FEK0
Length = 615
Score = 639 (230.0 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 159/409 (38%), Positives = 229/409 (55%)
Query: 35 FRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVL 91
F L +V G+P NT + I++++ G + ++ NY DI W++ P + V+
Sbjct: 173 FYLNKVTGIPKKYNTGALHIKEILSPMFGTLKESVQFNYCFDIPWMVEQYPPEFRNKPVV 232
Query: 92 VIHGES-DGTLEHMKRNKPANWILH-KPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLI 149
++HGE + +++ KP I + L I+FGTHH+K MLL Y G R+I+ T+NLI
Sbjct: 233 LVHGEKRESKACLIEQAKPYPHISFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLI 292
Query: 150 HVDWNNKSQGLWMQD-FPLKDQNN---LSEEC-GFENDLIDYLSTLKWPEFSANLPAHGX 204
DW K+QG+WM +P Q + E GF+ DL++YL + PE AN
Sbjct: 293 RADWYQKTQGMWMSPLYPRLPQGSPGTAGESLTGFKRDLLEYLEAYRAPEL-ANW----- 346
Query: 205 XXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFE-KGFKKSPL 263
V LI S PG + G +++KWGH++LR +L E T + ++ +
Sbjct: 347 ----IERIKQHDLSETRVYLIGSTPGRYQGPAMEKWGHLRLRKLLSEHTQPMQNEERWHV 402
Query: 264 VYQFSSLGS--LDE-KWMAELXXXXXXXXXEDKTPLGIGEP--LIVWPTVEDVRCSLEGY 318
+ QFSS+GS LD+ KW+A + L E L+++P+VE+VR SLEGY
Sbjct: 403 LGQFSSIGSMGLDKTKWLAAEFQRTLTTLGKAGKSLASPETQMLLIYPSVENVRTSLEGY 462
Query: 319 AAGNAIPSPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLLTS 375
AG ++P + K +L Y+ W A TGRS AMPHIKT+ R + +LAWFL+TS
Sbjct: 463 PAGGSLPYSIQTAQKQLWLHSYFHGWHADVTGRSNAMPHIKTYMRISPDFTQLAWFLVTS 522
Query: 376 ANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPS 424
ANLSKAAWGAL+KNN+Q+M+RSYELGVL LPSA F N+ P+
Sbjct: 523 ANLSKAAWGALEKNNTQIMVRSYELGVLYLPSAFNMST-FPVEKNVFPA 570
Score = 84 (34.6 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 470 QRYSSEDVPWSWDKRYTKK-DVYGQVW 495
QRYSS+D PW W+ YT+ D +G VW
Sbjct: 586 QRYSSKDRPWIWNIPYTQAPDTHGNVW 612
>UNIPROTKB|G3V2F4 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 ProteinModelPortal:G3V2F4 SMR:G3V2F4
Ensembl:ENST00000555880 ArrayExpress:G3V2F4 Bgee:G3V2F4
Uniprot:G3V2F4
Length = 578
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 165/402 (41%), Positives = 229/402 (56%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 163 PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 222
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 223 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 282
Query: 147 NLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 202
NLIH DW+ K+QG+W+ +P + D + S E F+ DLI YL P +
Sbjct: 283 NLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV- 341
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS- 261
V LI S PG GS WGH +L+ +L++ +S
Sbjct: 342 ---------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESW 392
Query: 262 PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLE 316
P+V QFSS+GSL DE KW+ +E E KTP PL +++P+VE+VR SLE
Sbjct: 393 PVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLE 452
Query: 317 GYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLL 373
GY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+
Sbjct: 453 GYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLV 512
Query: 374 TSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAK-RHGCG 414
TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA HG G
Sbjct: 513 TSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSAFIGHGYG 554
>UNIPROTKB|E7EPD8 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 IPI:IPI00872094
ProteinModelPortal:E7EPD8 SMR:E7EPD8 Ensembl:ENST00000393452
UCSC:uc010atn.3 ArrayExpress:E7EPD8 Bgee:E7EPD8 Uniprot:E7EPD8
Length = 589
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 171/442 (38%), Positives = 243/442 (54%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 163 PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 222
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 223 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 282
Query: 147 NLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAH 202
NLIH DW+ K+QG+W+ +P + D + S E F+ DLI YL P +
Sbjct: 283 NLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV- 341
Query: 203 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS- 261
V LI S PG GS WGH +L+ +L++ +S
Sbjct: 342 ---------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESW 392
Query: 262 PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLE 316
P+V QFSS+GSL DE KW+ +E E KTP PL +++P+VE+VR SLE
Sbjct: 393 PVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLE 452
Query: 317 GYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQ--KLAWFLL 373
GY AG ++P + +K ++L Y+ KW A +GRS AMPHIKT+ R + K+AWFL+
Sbjct: 453 GYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLV 512
Query: 374 TSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTET 433
TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA F+ I E+++ + +
Sbjct: 513 TSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA------FAPAKRI-KDEVEASFSGS 565
Query: 434 SQIQKTKLVTLTWHGSSDAGAS 455
Q Q V L W ++ S
Sbjct: 566 RQFQSETEV-LRWQPGANGHLS 586
>UNIPROTKB|Q86TV8 [details] [associations]
symbol:TDP1 "Full-length cDNA clone CS0DI031YK16 of
Placenta of Homo sapiens (human)" species:9606 "Homo sapiens"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634
GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415 EMBL:AL137128
UniGene:Hs.209945 HGNC:HGNC:18884 EMBL:BX161451 IPI:IPI00384157
HSSP:Q9NUW8 SMR:Q86TV8 STRING:Q86TV8 Ensembl:ENST00000357382
UCSC:uc001xya.3 HOGENOM:HOG000147157 HOVERGEN:HBG067466
Uniprot:Q86TV8
Length = 369
Score = 556 (200.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 130/293 (44%), Positives = 174/293 (59%)
Query: 129 KAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEECG--FENDLI 184
K MLL+Y G+R+++HT+NLIH DW+ K+QG+W+ +P + D + S E F+ DLI
Sbjct: 26 KMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLI 85
Query: 185 DYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMK 244
YL P + V LI S PG GS WGH +
Sbjct: 86 SYLMAYNAPSLKEWIDV----------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFR 135
Query: 245 LRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXXXXEDKTPLGIG 299
L+ +L++ +S P+V QFSS+GSL DE KW+ +E E KTP
Sbjct: 136 LKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSS 195
Query: 300 EPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRSRAMPHI 357
PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A +GRS AMPHI
Sbjct: 196 VPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHI 255
Query: 358 KTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSA 408
KT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL LPSA
Sbjct: 256 KTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFLPSA 308
Score = 66 (28.3 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 472 YSSEDVPWSWDKRYTKK-DVYGQVW 495
Y S+D PW W+ Y K D +G +W
Sbjct: 342 YGSKDRPWIWNIPYVKAPDTHGNMW 366
>WB|WBGene00018678 [details] [associations]
symbol:F52C12.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] InterPro:IPR001736 InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0004527 GO:GO:0090305
GO:GO:0008081 EMBL:FO081438 PIR:A88641 RefSeq:NP_500149.1
ProteinModelPortal:Q9TXV7 STRING:Q9TXV7 PaxDb:Q9TXV7
EnsemblMetazoa:F52C12.1.1 EnsemblMetazoa:F52C12.1.2 GeneID:176996
KEGG:cel:CELE_F52C12.1 UCSC:F52C12.1 CTD:176996 WormBase:F52C12.1
eggNOG:NOG274417 GeneTree:ENSGT00390000002211 HOGENOM:HOG000199611
InParanoid:Q9TXV7 KO:K10862 OMA:VIHTANM NextBio:894908
PANTHER:PTHR12415 Uniprot:Q9TXV7
Length = 451
Score = 398 (145.2 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 124/382 (32%), Positives = 190/382 (49%)
Query: 43 LPAWANTSCVSIRDVIQGDI--IVAILSNYMVDIDWLLPACPV-LAKIPHVLVIHGESDG 99
+P + S S+ D I DI I ++ ++M+D ++L+ + P L + P LV+
Sbjct: 46 VPRQESESSRSL-DEILADIRPINSLHFSFMLDFEFLIGSYPPSLREYPITLVVGAPDAP 104
Query: 100 TLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQ 158
L +N+ ++ LPI FGTHH+K +L G +IV TANL+ DW K+Q
Sbjct: 105 DLLKCTKNQKLVTVVGAS-LPIPFGTHHTKMSILEDEDGRFHVIVSTANLVPDDWEFKTQ 163
Query: 159 GLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXXXXXXXXX 218
+ +F +K + F++DL++YLS +
Sbjct: 164 QFYY-NFGVKIASGTVPRSDFQDDLLEYLSMYR-----------NQLDTWKQLLQKVDFS 211
Query: 219 XAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQE-CTFEKGFK---KSPLVYQFSSLGSLD 274
+ RLI S PGYHT ++ GH +L +L E F+ ++ + V Q SS+GSL
Sbjct: 212 QISDRLIFSTPGYHTDPPTQRPGHPRLFRILSEKFPFDASYEHTERCTFVAQCSSIGSLG 271
Query: 275 EKWMAELXXXXXXXXXEDKTPLGIGEPL---IVWPTVEDVRCSLEGYAAGNAIPSPQK-N 330
+ E P +P +V+P+VEDVR S +GYA G ++P +
Sbjct: 272 SAPI-NWFRGQFLQSLEGANPSPKQKPAKMYLVFPSVEDVRTSCQGYAGGCSVPYRNSVH 330
Query: 331 VDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQ--- 387
+ +L+ KW+++ R+ A+PH KT+ +Y+ + W LLTSANLSKAAWG +
Sbjct: 331 ARQKWLQGNMCKWRSNAKRRTNAVPHCKTYVKYDKKVAIWQLLTSANLSKAAWGEVSFNK 390
Query: 388 -KNNSQLMIRSYELGVLIL-PS 407
KN QLMIRS+E+GVLI PS
Sbjct: 391 SKNVEQLMIRSWEMGVLITDPS 412
Score = 62 (26.9 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 472 YSSEDVPWSWDKRYTKKDVYGQVW 495
YS+ D P+ DK++ K D+ G +W
Sbjct: 425 YSATDEPFVTDKKHEKPDILGCIW 448
>FB|FBgn0260817 [details] [associations]
symbol:gkt "glaikit" species:7227 "Drosophila melanogaster"
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0045197 "establishment or maintenance of
epithelial cell apical/basal polarity" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0005737
EMBL:AE014134 GO:GO:0006281 GO:GO:0007417 GO:GO:0004527
GO:GO:0090305 InterPro:IPR019406 Pfam:PF10283 GO:GO:0017005
GO:GO:0045197 eggNOG:NOG274417 GeneTree:ENSGT00390000002211
KO:K10862 PANTHER:PTHR12415 EMBL:AJ277122 EMBL:AY051884
EMBL:AY060810 RefSeq:NP_523465.2 UniGene:Dm.3843
ProteinModelPortal:Q9VQM4 SMR:Q9VQM4 MINT:MINT-1647814
STRING:Q9VQM4 PaxDb:Q9VQM4 PRIDE:Q9VQM4 EnsemblMetazoa:FBtr0077574
GeneID:33530 KEGG:dme:Dmel_CG8825 CTD:33530 FlyBase:FBgn0260817
InParanoid:Q9VQM4 OMA:WGHLRLR OrthoDB:EOG4HMGRD PhylomeDB:Q9VQM4
GenomeRNAi:33530 NextBio:784060 Bgee:Q9VQM4 GermOnline:CG8825
Uniprot:Q9VQM4
Length = 580
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 131/387 (33%), Positives = 192/387 (49%)
Query: 44 PAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPA---CPVLAKIPHVLVIHGES 97
P + +++++++ G+I + N+MVDI WLL +L K P +L+ ES
Sbjct: 162 PTHSEPLSITLQEILDESLGEIESTVQINFMVDIGWLLGHYYFAGILDK-PLLLLYGDES 220
Query: 98 DGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNK 156
L K + I K P P F T H+K M L Y G +R+++ TANL DW+N+
Sbjct: 221 PELLSIGKFKQQVTAIRVKMPTP--FATSHTKMMFLGYSDGSMRVVISTANLYEDDWHNR 278
Query: 157 SQGLWMQD----FPLKDQNNLSEEC-GFENDLIDYLSTLKWPEFSANLPAHGXXXXXXXX 211
+QGLW+ P+ E GF+ DL+ YL K + +
Sbjct: 279 TQGLWISPKLPALPVDADTGAGESLTGFKQDLMLYLVEYKISQLQPWI----------AR 328
Query: 212 XXXXXXXXAAVRLIASVPGYHTGSSLK--KWGHMKLRTVLQECTFEKGFKKSPLVYQFSS 269
V + SVPG H S++ WGH +L ++L + + P+V Q SS
Sbjct: 329 IRNSDFSAINVFFLGSVPGGHREGSVRGHPWGHARLASLLAKHAAPID-DRIPVVCQSSS 387
Query: 270 LGSLDEKWMAELXXXXXXXXXEDKTPLG-IGE--PL-IVWPTVEDVRCSLEGYAAGNAIP 325
+GSL A + +D TP+G + + P +++P+ +V S +G G +P
Sbjct: 388 IGSLGANVQAWIQQDFVNSLKKDSTPVGKLRQMPPFKMIYPSYGNVAGSHDGMLGGGCLP 447
Query: 326 SPQKNVDKD-FLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSKAA 382
+ DK +LK Y +WK+S RSRAMPHIK++ R+N Q + WF+LTSANLSKAA
Sbjct: 448 YGKNTNDKQPWLKDYLQQWKSSDRFRSRAMPHIKSYTRFNLEDQSVYWFVLTSANLSKAA 507
Query: 383 WGALQKN-NSQ--LMIRSYELGVLILP 406
WG KN N Q L I +YE GVL LP
Sbjct: 508 WGCFNKNSNIQPCLRIANYEAGVLFLP 534
>UNIPROTKB|H0YJ44 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000556063
Uniprot:H0YJ44
Length = 281
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 94/184 (51%), Positives = 123/184 (66%)
Query: 234 GSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL--DE-KWM-AELXXXXXXX 288
GS WGH +L+ +L++ +S P+V QFSS+GSL DE KW+ +E
Sbjct: 5 GSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTL 64
Query: 289 XXEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKAS 346
E KTP PL +++P+VE+VR SLEGY AG ++P + +K ++L Y+ KW A
Sbjct: 65 GKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAE 124
Query: 347 HTGRSRAMPHIKTFARYNGQ--KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 404
+GRS AMPHIKT+ R + K+AWFL+TSANLSKAAWGAL+KN +QLMIRSYELGVL
Sbjct: 125 TSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLF 184
Query: 405 LPSA 408
LPSA
Sbjct: 185 LPSA 188
>UNIPROTKB|G4N013 [details] [associations]
symbol:MGG_06176 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR010347
Pfam:PF06087 GO:GO:0005634 EMBL:CM001233 GO:GO:0006281
GO:GO:0008081 KO:K10862 PANTHER:PTHR12415 RefSeq:XP_003712058.1
EnsemblFungi:MGG_06176T0 GeneID:2684314 KEGG:mgr:MGG_06176
Uniprot:G4N013
Length = 555
Score = 277 (102.6 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 95/313 (30%), Positives = 150/313 (47%)
Query: 33 STFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAIL--SNYMVDIDWLLPACPV-LAKIPH 89
S FRL R++ L N + + D+I GD ++A NY+ DI++LL A + +
Sbjct: 83 SPFRLTRIRDLGEEDNADALGLNDII-GDPLIAECWDFNYLHDIEFLLDALDQDVRDVVK 141
Query: 90 VLVIHG---ESDGT--LEHMKRNKPANWILHKPPLPISFGTHHSKAMLLI-YPRGVRIIV 143
V V+HG + D + L K N +LH LP FGTHHSK ++L+ + ++I+
Sbjct: 142 VHVVHGFWKKDDPSRILLQDDAEKHKNVVLHTAFLPEIFGTHHSKMLVLLRHDDTAQVII 201
Query: 144 HTANLIHVDWNNKSQGLWMQD-FPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAH 202
HTAN+I DW N + G+W+ PL + ++ +EN L + + L A+
Sbjct: 202 HTANMIPKDWTNMTNGIWLSPRLPLLQGQDPADASQYEN-LAEGTGYKFKIDLLNYLRAY 260
Query: 203 GXXXXX--XXXXXXXXXXXAAVR--LIASVPGYH--TGSSLKKWGHMKLRTVLQECTFEK 256
+++R LIASVPG H T S WG + ++ L+ +
Sbjct: 261 DDKRVVCRDLVTNLEKYDFSSIRGTLIASVPGRHDFTDLSTSAWGWVAIKRALRSVPLQV 320
Query: 257 GFKKSPLVYQFSSLGSLD--EKWMAELXXXXXXXXXEDKTPLGIG-EPL--IVWPTVEDV 311
G KS +V Q SS+ +L + W L KT G+ P I++PT +++
Sbjct: 321 G--KSEVVTQISSIATLGPTDTW---LQRTLFESMCRGKTT-GVAPRPQFKIIFPTADEI 374
Query: 312 RCSLEGYAAGNAI 324
R SL+GY +G +I
Sbjct: 375 RRSLDGYGSGGSI 387
Score = 165 (63.1 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 32/58 (55%), Positives = 39/58 (67%)
Query: 349 GRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 406
GR+RA PHIKT+ RY + W LL+SANLSK AWG SQ I S+E+GVL+ P
Sbjct: 430 GRNRAAPHIKTYIRYGANSIDWALLSSANLSKQAWGDATGAGSQTRISSWEIGVLVWP 487
Score = 54 (24.1 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 470 QRYSSEDVPWSWDKRYTKKDVYGQVW 495
Q+Y + +VPW Y++ D G W
Sbjct: 530 QKYGNGEVPWVATLSYSEPDWAGNTW 555
>ASPGD|ASPL0000004965 [details] [associations]
symbol:AN5903 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0017005 "3'-tyrosyl-DNA
phosphodiesterase activity" evidence=IEA] [GO:0000012 "single
strand break repair" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 EMBL:BN001301 EMBL:AACD01000101
GO:GO:0008081 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 OrthoDB:EOG4KD9W6 RefSeq:XP_663507.1
EnsemblFungi:CADANIAT00007130 GeneID:2870818 KEGG:ani:AN5903.2
HOGENOM:HOG000163738 Uniprot:Q5B0M7
Length = 586
Score = 230 (86.0 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 95/342 (27%), Positives = 151/342 (44%)
Query: 48 NTSCVSIRDVIQGDIIVAIL--SNYMVDIDWLLPACPV-LAKIPHVLVIHGESDGTLEHM 104
N V +RD++ GD ++ NY D+D+L+ + + V V+HG E+
Sbjct: 95 NDDTVKLRDIL-GDPLIRECWQFNYCFDVDFLMDQFDEDVRNLVRVKVVHGSWKKDSENR 153
Query: 105 KR-NKPANWILHKPPL----PISFGTHHSKAMLLI-YPRGVRIIVHTANLIHVDWNNKSQ 158
R K + P+ P FGTHHSK M+L+ + ++++HTAN++ DW + Q
Sbjct: 154 VRIEKACQRYPNVEPIVAYMPEPFGTHHSKMMILLRHDDFAQVVIHTANMLAGDWGDMCQ 213
Query: 159 GLWMQDF-PL----KDQNNLSEECG--FENDLIDYLSTLKWPEFSANLPAHGXXXXXXXX 211
+W PL +D+N+ + G F+ DL+ YL A+G
Sbjct: 214 AIWRSPLLPLTDGHEDKNSTAWGTGARFKRDLLAYLK------------AYGVKKTGPLV 261
Query: 212 XXXXXXXXAAVR--LIASVPGYHT-------GSSLKKWGH--MK--LRTV-LQECTFEKG 257
+AVR LIASVP G+S KWG +K LR V L+E G
Sbjct: 262 EQLGKYDFSAVRAALIASVPSKQKVDASSIDGNSKTKWGWPALKEALRNVPLRENVGADG 321
Query: 258 FKKSP-LVYQFSSLGSLDE--KWMAELXXXXXXXXXED-KTPLGIGEPLIVWPTVEDVRC 313
P +V Q SS+ +L + KW+ ++ KT +++PT E++R
Sbjct: 322 TATVPHIVTQISSIATLGQTDKWLKDVFFNALAASSSSTKTRPRYS---VIFPTAEEIRR 378
Query: 314 SLEGYAAGNAI----PSPQKNVDKDFLKKYWAKWKASHTGRS 351
SL+GY G +I S + +L+ Y W +G++
Sbjct: 379 SLKGYGYGGSIHMKLQSAAQKKQLQYLRPYLCHWAGDVSGQA 420
Score = 141 (54.7 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 29/61 (47%), Positives = 39/61 (63%)
Query: 349 GRSRAMPHIKTFARYNGQKLA---WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 405
GR RA PHIKT+ R+ Q + W L+TSANLS AWGA ++ + S+E+GVL+
Sbjct: 428 GRRRAAPHIKTYIRFADQHMRSIDWALVTSANLSTQAWGAAANAAGEVRVCSWEIGVLVW 487
Query: 406 P 406
P
Sbjct: 488 P 488
Score = 54 (24.1 bits), Expect = 5.7e-28, Sum P(3) = 5.7e-28
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 472 YSSEDVPWSWDKRYTKKDVYGQVW 495
YS++D PW + + D GQ W
Sbjct: 547 YSTQDEPWCATMSHIEPDWLGQTW 570
>POMBASE|SPCP31B10.05 [details] [associations]
symbol:tdp1 "tyrosyl-DNA phosphodiesterase Tdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000012 "single strand
break repair" evidence=IMP] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0017005
"3'-tyrosyl-DNA phosphodiesterase activity" evidence=IMP]
InterPro:IPR010347 Pfam:PF06087 PomBase:SPCP31B10.05 GO:GO:0005634
EMBL:CU329672 GO:GO:0004527 GO:GO:0090305 GO:GO:0000012
GO:GO:0017005 eggNOG:NOG274417 KO:K10862 OMA:VIHTANM
PANTHER:PTHR12415 PIR:T41695 RefSeq:NP_587861.1 HSSP:P38319
ProteinModelPortal:Q9USG9 STRING:Q9USG9 EnsemblFungi:SPCP31B10.05.1
GeneID:2539579 KEGG:spo:SPCP31B10.05 OrthoDB:EOG4KD9W6
NextBio:20800737 Uniprot:Q9USG9
Length = 536
Score = 232 (86.7 bits), Expect = 4.0e-27, Sum P(3) = 4.0e-27
Identities = 77/212 (36%), Positives = 110/212 (51%)
Query: 220 AAVR--LIASVPGYHTGSSLKKWGHMKLRTVLQ--ECTFEKG----FKKSPL-VYQFSSL 270
+A+R I SVPG G WG KL+ +L+ E +K F++S + + Q SS+
Sbjct: 257 SAIRAIFIGSVPGKFEGEEESSWGLGKLKKILKMLEKDSKKDEKTKFEESDICISQCSSM 316
Query: 271 GSLDEK--WMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAI---- 324
GS K ++AEL D G ++PTV++V+ S+ G+ +G++I
Sbjct: 317 GSFGPKQEYIAELT---------DGFGCQRGNWKFLFPTVKEVQQSMLGWQSGSSIHFNI 367
Query: 325 --PSPQKNVDKDFLKKYWAKWKASHTGRSRAMPHIKTFARYN--GQKLAWFLLTSANLSK 380
+ V+ K KW A GR R PHIKT+ R++ G+ L W L+TSANLSK
Sbjct: 368 LGKTAASQVETLKKGKNLCKWVAMKAGRQRVAPHIKTYMRFSNDGELLRWVLVTSANLSK 427
Query: 381 AAWGALQ----KNNSQ--LMIRSYELGVLILP 406
AWG L+ K+ S L IRSYE GVL+ P
Sbjct: 428 PAWGTLEGHKAKSRSTRGLRIRSYEAGVLLYP 459
Score = 132 (51.5 bits), Expect = 4.0e-27, Sum P(3) = 4.0e-27
Identities = 41/144 (28%), Positives = 70/144 (48%)
Query: 27 SRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILS-NYMVDIDWLLPA--CPV 83
S + + S L ++ LP N C+ ++ +I + N+ VD+++LL V
Sbjct: 16 SNEIIDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMHASV 75
Query: 84 LAKIPHVLVIHG---ESDGT--LEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPR- 137
+ V + HG +SD L + P N L+ +P+ +GTHHSK M+ +
Sbjct: 76 FPTVD-VRITHGYDSKSDSLARLTAQMNHCPVNVKLYSVYVPM-WGTHHSKIMVNFFKDD 133
Query: 138 GVRIIVHTANLIHVDWNNKSQGLW 161
+I++HTANL+ DW SQ ++
Sbjct: 134 SCQIVIHTANLVEPDWIGMSQAIF 157
Score = 50 (22.7 bits), Expect = 4.0e-27, Sum P(3) = 4.0e-27
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 472 YSSEDVPWSWDKRYTKKDVYGQVWP 496
Y +D WS T KD G VWP
Sbjct: 509 YEDKDEIWSPVINRTDKDWLGYVWP 533
>UNIPROTKB|G3V2J6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2J6 SMR:G3V2J6 Ensembl:ENST00000553617
ArrayExpress:G3V2J6 Bgee:G3V2J6 Uniprot:G3V2J6
Length = 219
Score = 267 (99.0 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 55/152 (36%), Positives = 88/152 (57%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 64 PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 123
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 124 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 183
Query: 147 NLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEE 176
NLIH DW+ K+QG+W+ +P + D + S E
Sbjct: 184 NLIHADWHQKTQGIWLSPLYPRIADGTHKSGE 215
>UNIPROTKB|Q9BRS7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 UniGene:Hs.209945 HGNC:HGNC:18884 HSSP:Q9NUW8
EMBL:BC006083 IPI:IPI01015250 SMR:Q9BRS7 STRING:Q9BRS7
Ensembl:ENST00000545686 Uniprot:Q9BRS7
Length = 298
Score = 250 (93.1 bits), Expect = 9.3e-21, P = 9.3e-21
Identities = 50/133 (37%), Positives = 78/133 (58%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 163 PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 222
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 146
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++HT+
Sbjct: 223 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 282
Query: 147 NLIHVDWNNKSQG 159
NLIH DW+ K+QG
Sbjct: 283 NLIHADWHQKTQG 295
>UNIPROTKB|G3V2U6 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0000012 "single strand break repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 GO:GO:0005634 GO:GO:0008081
GO:GO:0000012 PANTHER:PTHR12415 EMBL:AL137128 HGNC:HGNC:18884
ProteinModelPortal:G3V2U6 SMR:G3V2U6 Ensembl:ENST00000554180
ArrayExpress:G3V2U6 Bgee:G3V2U6 Uniprot:G3V2U6
Length = 279
Score = 179 (68.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 39/117 (33%), Positives = 64/117 (54%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 88
P F L RV G+ N+ + I+D++ G ++ + NY D+DWL+ P +
Sbjct: 163 PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 222
Query: 89 HVLVIHGESDGTLEHMKRN-KP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIV 143
+L++HG+ H+ KP N L + L I+FGTHH+K MLL+Y G+R+++
Sbjct: 223 PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVI 279
>UNIPROTKB|H0YJL7 [details] [associations]
symbol:TDP1 "Tyrosyl-DNA phosphodiesterase 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008081 "phosphoric diester hydrolase
activity" evidence=IEA] InterPro:IPR010347 Pfam:PF06087
GO:GO:0005634 GO:GO:0006281 GO:GO:0008081 PANTHER:PTHR12415
EMBL:AL137128 HGNC:HGNC:18884 Ensembl:ENST00000557782 Bgee:H0YJL7
Uniprot:H0YJL7
Length = 51
Score = 159 (61.0 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 119 LPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQG 159
L I+FGTHH+K MLL+Y G+R+++HT+NLIH DW+ K+QG
Sbjct: 3 LDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQG 43
>DICTYBASE|DDB_G0273869 [details] [associations]
symbol:DDB_G0273869 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 113 (44.8 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 36/144 (25%), Positives = 66/144 (45%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIV-AILSNYMVDIDWLLPACPVLA--KIP 88
P++F L P + +S +D+I+ +V A++S + +D +W++ K+
Sbjct: 207 PNSFYLNSTNEQPRICTINTLSFKDLIKKPGMVGALVSGFALDPEWVIKEIRKEHGNKVK 266
Query: 89 HVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANL 148
V + T N I PPL ++ +HSK M+ + VR+++ ++N
Sbjct: 267 FTFVKNYSKPETKGRHAINDFITVI--NPPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNP 323
Query: 149 IHVDWNNKSQGLWMQDFPLKDQNN 172
D++ Q +W QDF K NN
Sbjct: 324 TKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 103 (41.3 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 367 KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 405
K W S N S +AWGA QKN SQ+ I ++E+GVL+L
Sbjct: 655 KYDWVYTGSHNFSLSAWGAFQKNESQVSISNFEIGVLLL 693
Score = 39 (18.8 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 221 AVRLIASVPGYH 232
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
>DICTYBASE|DDB_G0273125 [details] [associations]
symbol:DDB_G0273125 "Tyrosyl-DNA phosphodiesterase 1"
species:44689 "Dictyostelium discoideum" [GO:0008081 "phosphoric
diester hydrolase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR010347 Pfam:PF06087 dictyBase:DDB_G0273869
dictyBase:DDB_G0273125 GO:GO:0005634 GO:GO:0006281
EMBL:AAFI02000011 EMBL:AAFI02000009 GO:GO:0008081
RefSeq:XP_644551.1 RefSeq:XP_644700.1 ProteinModelPortal:Q556S0
EnsemblProtists:DDB0168041 EnsemblProtists:DDB0217348
GeneID:8618799 GeneID:8619177 KEGG:ddi:DDB_G0273125
KEGG:ddi:DDB_G0273869 InParanoid:Q556S0 OMA:QTIWFQD
ProtClustDB:CLSZ2431202 Uniprot:Q556S0
Length = 734
Score = 113 (44.8 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 36/144 (25%), Positives = 66/144 (45%)
Query: 32 PSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIV-AILSNYMVDIDWLLPACPVLA--KIP 88
P++F L P + +S +D+I+ +V A++S + +D +W++ K+
Sbjct: 207 PNSFYLNSTNEQPRICTINTLSFKDLIKKPGMVGALVSGFALDPEWVIKEIRKEHGNKVK 266
Query: 89 HVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANL 148
V + T N I PPL ++ +HSK M+ + VR+++ ++N
Sbjct: 267 FTFVKNYSKPETKGRHAINDFITVI--NPPL-FNYQLYHSKLMIFTFVDLVRVVIPSSNP 323
Query: 149 IHVDWNNKSQGLWMQDFPLKDQNN 172
D++ Q +W QDF K NN
Sbjct: 324 TKFDYSGWGQTIWFQDFLKKQPNN 347
Score = 103 (41.3 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 367 KLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 405
K W S N S +AWGA QKN SQ+ I ++E+GVL+L
Sbjct: 655 KYDWVYTGSHNFSLSAWGAFQKNESQVSISNFEIGVLLL 693
Score = 39 (18.8 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 221 AVRLIASVPGYH 232
AV+LI S+PG +
Sbjct: 432 AVKLITSIPGIY 443
>TAIR|locus:2183319 [details] [associations]
symbol:AT5G07400 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] InterPro:IPR000253 InterPro:IPR008984
InterPro:IPR010347 InterPro:IPR014905 Pfam:PF00498 Pfam:PF06087
Pfam:PF08797 PROSITE:PS50006 SMART:SM00240 SMART:SM00910
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008270
GO:GO:0006281 GO:GO:0003676 Gene3D:2.60.200.20 SUPFAM:SSF49879
GO:GO:0008081 GO:GO:0016818 PANTHER:PTHR12415 EMBL:BT006446
EMBL:AK227680 IPI:IPI00526172 RefSeq:NP_196357.2 UniGene:At.32724
ProteinModelPortal:Q84MA4 PaxDb:Q84MA4 PRIDE:Q84MA4
EnsemblPlants:AT5G07400.1 GeneID:830631 KEGG:ath:AT5G07400
TAIR:At5g07400 eggNOG:NOG319591 HOGENOM:HOG000083778
InParanoid:Q84MA4 OMA:ITSANLV PhylomeDB:Q84MA4
ProtClustDB:CLSN2681035 Genevestigator:Q84MA4 Uniprot:Q84MA4
Length = 1084
Score = 106 (42.4 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 43/145 (29%), Positives = 64/145 (44%)
Query: 107 NKPANWILHKPPLP--ISFGT---------HHSKAMLLIYPRGVRIIVHTANLIHVDWNN 155
N P N + PP P I+FG HH K +L +R+I+ +ANL+ WN+
Sbjct: 449 NYP-NVTMVYPPFPEEIAFGKDRTNRGIACHHPKLFILQRKDSIRVIITSANLVARQWND 507
Query: 156 KSQGLWMQDFPLK-DQNNLS--EECGFEND---LIDYLSTLKWPEFSANLPAH-GXXXXX 208
+ +W QDFP + D + LS C E + D+ + L F+A+L
Sbjct: 508 VTNTVWWQDFPRRADPDLLSLFGHCQRETNHGLKPDFCAQLAG--FAASLLTDVPSQAHW 565
Query: 209 XXXXXXXXXXXAAVRLIASVPGYHT 233
+A L+ASVPG H+
Sbjct: 566 ILEFTKYNFEHSAGHLVASVPGIHS 590
Score = 60 (26.2 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 36/134 (26%), Positives = 53/134 (39%)
Query: 303 IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKAS---HTG----RSRA-M 354
I++PT+E V+ G + + F +K W KW+ S H + R
Sbjct: 848 IIFPTIERVKNGHHGVLSSRRLLC--------FSEKTWQKWRHSNVLHDAVPNPQDRVGH 899
Query: 355 P-HIKT----FARYNGQK---LAWFLLTSANLSKAAWGAL----------QKNNS----- 391
P HIK F G + W S N S AAWG Q NN+
Sbjct: 900 PMHIKVARRLFTSTRGSRSSSFGWVYSGSHNFSAAAWGQTISRSSRNNQDQSNNAIRAVK 959
Query: 392 QLMIRSYELGVLIL 405
+L + +YELG++ +
Sbjct: 960 KLRVCNYELGIVFV 973
Score = 48 (22.0 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 35 FRLLRVQGLPAWANTSC---VSIRDVIQG-DIIVAI-LSNYMVDIDWLLPACPVLAKIPH 89
F L R+Q + ++T C VS+ +++ + I I L+ + DI W L C +P
Sbjct: 366 FYLNRLQYIEQ-SSTGCQRVVSLPELLHPVESIQQIFLATFTSDILWFLTCCDTPRHLPV 424
Query: 90 VLVIH 94
+ H
Sbjct: 425 TIACH 429
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 507 469 0.00098 118 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 631 (67 KB)
Total size of DFA: 337 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.53u 0.08s 34.61t Elapsed: 00:00:02
Total cpu time: 34.53u 0.08s 34.61t Elapsed: 00:00:02
Start: Fri May 10 14:25:38 2013 End: Fri May 10 14:25:40 2013