Query 010545
Match_columns 507
No_of_seqs 159 out of 340
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 6E-113 2E-117 912.2 25.4 443 15-498 2-464 (464)
2 3sq7_A Tyrosyl-DNA phosphodies 100.0 1.2E-99 4E-104 803.9 19.2 401 33-485 3-465 (470)
3 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 1.9E-99 6E-104 815.7 15.5 404 30-487 77-543 (544)
4 1byr_A Protein (endonuclease); 87.8 0.44 1.5E-05 41.7 4.2 39 353-406 91-129 (155)
5 4ggj_A Mitochondrial cardiolip 84.9 0.9 3.1E-05 42.2 4.9 38 352-404 120-157 (196)
6 3hsi_A Phosphatidylserine synt 81.9 0.91 3.1E-05 48.0 4.0 40 351-405 359-398 (458)
7 1byr_A Protein (endonuclease); 75.6 2.3 7.9E-05 36.9 4.1 40 122-164 89-129 (155)
8 1v0w_A Phospholipase D; hydrol 72.4 2 6.9E-05 45.6 3.3 30 122-154 162-191 (506)
9 4gel_A Mitochondrial cardiolip 62.7 4.5 0.00015 37.5 3.2 26 369-405 165-190 (220)
10 4ggj_A Mitochondrial cardiolip 55.3 8.9 0.0003 35.3 3.8 41 121-164 118-159 (196)
11 1v0w_A Phospholipase D; hydrol 44.9 19 0.00065 38.0 4.8 37 123-164 436-472 (506)
12 1xdp_A Polyphosphate kinase; P 33.8 34 0.0012 37.9 4.7 42 353-405 431-475 (687)
13 1xdp_A Polyphosphate kinase; P 32.2 30 0.001 38.3 3.9 43 352-406 587-629 (687)
14 3hsi_A Phosphatidylserine synt 29.3 24 0.00083 36.9 2.5 56 122-190 359-415 (458)
15 2c1l_A Restriction endonucleas 28.2 47 0.0016 32.3 4.0 58 333-404 82-141 (358)
16 2c1l_A Restriction endonucleas 27.0 40 0.0014 32.8 3.3 31 122-152 100-130 (358)
17 1jy1_A TDP1, tyrosyl-DNA phosp 22.2 53 0.0018 34.5 3.5 34 353-387 116-149 (464)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=5.9e-113 Score=912.21 Aligned_cols=443 Identities=40% Similarity=0.741 Sum_probs=369.2
Q ss_pred cCchhhhcccCCCCCCCCCceEEEEecCCCCCCCCCceeecccccc---cHHhhhhhhcccChhhhcccCCC-CCCCCeE
Q 010545 15 DSNEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQG---DIIVAILSNYMVDIDWLLPACPV-LAKIPHV 90 (507)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~F~L~~~~~~~~~~n~~~itl~Dll~~---~l~~a~l~sF~~Dl~WLl~~~~~-~~~~~~i 90 (507)
+..+|+++.++.....-|++|+||+|++.+..+|.++|||+|||++ ++++|++||||+|++||+++|+. .+++| |
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~-v 80 (464)
T 1jy1_A 2 EDPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP-I 80 (464)
T ss_dssp CCTTTTCCGGGTSCTTCSSCEEEBCCTTSCGGGGTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSC-E
T ss_pred CCcccccchhhhhcccCCceEEEEeecCCCcccCCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCc-E
Confidence 3568899999988877888999999999998889999999999975 58899999999999999999974 45664 7
Q ss_pred EEEeCCCCChhhhh--hhcCCCceEEecCCCCCCCCCccceeeEeeeCCccEEEEeCCCCCccccccccceEEEee-cCC
Q 010545 91 LVIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPL 167 (507)
Q Consensus 91 ~vv~g~~~~~~~~~--~~~~~~n~~~~~p~mp~~fGthHSKmmlL~y~d~lRVVI~TANL~~~DW~~~tQ~vW~qd-fP~ 167 (507)
+||+|++++....+ .....+|+++|+|+||.+|||||||||||+|+||||||||||||+++||+++||+||+|| ||+
T Consensus 81 ~iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~sd~lP~ 160 (464)
T 1jy1_A 81 LLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPR 160 (464)
T ss_dssp EEEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEECCCBCB
T ss_pred EEEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEecccCcC
Confidence 88889754322222 223457999999999999999999999999999999999999999999999999999999 798
Q ss_pred CCCCC---CCCCCCcHHHHHHHHHhcCCCccccCCCCCCCccccccccccccccccceEEEEccCCCCCCCccchhcHHH
Q 010545 168 KDQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMK 244 (507)
Q Consensus 168 ~~~~~---~~~~t~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~l~~~DFS~~~v~LV~SvPG~h~g~~~~~~G~~~ 244 (507)
++..+ .+++++|++||++||++|+.+.... +++.|++||||.++|+||+||||+|.|.+..+|||+|
T Consensus 161 ~~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~~G~~~ 230 (464)
T 1jy1_A 161 IADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFR 230 (464)
T ss_dssp CCTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGGSHHHH
T ss_pred CCccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchhhhHHH
Confidence 65433 3678999999999999998764322 2588999999999999999999999999999999999
Q ss_pred HHHHHhhccccC-CCcccCeEEEecCCCcCc---hHHH-HHHHHhccCCCCCCCCC-CCCCCcEEEccCchhhhcCcccC
Q 010545 245 LRTVLQECTFEK-GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRCSLEGY 318 (507)
Q Consensus 245 L~~~L~~~~~~~-~~~~~~i~~Q~SSiGsl~---~~wl-~~f~~sl~~~~~~~~~~-~~~~~~~IifPT~e~Vr~S~~G~ 318 (507)
|+++|+++.... ..+.++|+||+||||+++ .+|| ++|+.+|.+...+.+.+ ...++++|||||+||||+|.+|+
T Consensus 231 L~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~ 310 (464)
T 1jy1_A 231 LKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGY 310 (464)
T ss_dssp HHHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHTSSSCG
T ss_pred HHHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHhccccc
Confidence 999999987532 225789999999999997 4899 68999997753222211 23467999999999999999999
Q ss_pred CCCccccCCCccch-hHHHHHHHhhhcCCCCCCCCCCCcceeeeeecC--CceeEEEEeccccchhhhhccccCCceeee
Q 010545 319 AAGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLTSANLSKAAWGALQKNNSQLMI 395 (507)
Q Consensus 319 ~~gg~i~~~~~~~~-~~~l~~~~~kw~~~~~~R~~~~pH~K~y~r~~~--~~~~W~lltSaNLS~aAWG~~~k~~~ql~i 395 (507)
.+|||||++.+.++ +.|++++||+|+++.++|++++||||+|+|++. ..++|+||||||||+||||+++++++||+|
T Consensus 311 ~~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I 390 (464)
T 1jy1_A 311 PAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMI 390 (464)
T ss_dssp GGGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEE
T ss_pred CCcceeeccchhhhhhhhhHHHHHHhccCccCCCCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeE
Confidence 99999999866554 469999999999999999999999999999985 479999999999999999999999999999
Q ss_pred eeeeeeeEEcCCcccCCCccccccCCCCccccCCCccchhcccceeeeeecCCCCCCCCCCcccccccccCCCCCCCCCC
Q 010545 396 RSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSE 475 (507)
Q Consensus 396 ~nyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~ 475 (507)
|||||||||+|..+.+. .+.... +. . +. .....+.|||||++|++||+++
T Consensus 391 ~nyElGVl~~P~~~~~~-~~~~~~--------------------~~----~--~~---~~~~~~~~~vPy~lP~~~Y~~~ 440 (464)
T 1jy1_A 391 RSYELGVLFLPSALGLD-SFKVKQ--------------------KF----F--AG---SQEPMATFPVPYDLPPELYGSK 440 (464)
T ss_dssp CSBEEEEEECGGGGTCS-CEEEC----------------------------------------CEECCSSCSSCCBCCTT
T ss_pred eeeeeeEEEeccccccc-ccccCc--------------------cc----c--cc---ccCcccceeecCCCCCcCCCCC
Confidence 99999999999875432 121110 00 0 00 0122468999999999999999
Q ss_pred CCCceecCCCCCc-cCCCCCCccc
Q 010545 476 DVPWSWDKRYTKK-DVYGQVWPRH 498 (507)
Q Consensus 476 D~Pw~~~~~y~~~-D~~G~~w~~~ 498 (507)
|+||+++++|.+| |++|++|++.
T Consensus 441 D~Pw~~~~~~~~~~D~~G~~w~p~ 464 (464)
T 1jy1_A 441 DRPWIWNIPYVKAPDTHGNMWVPS 464 (464)
T ss_dssp CCBCCTTSCBCSSCCTTSCCBCCC
T ss_pred CCCeeCCCCCCCcccCCcCcCCCC
Confidence 9999999999997 9999999873
No 2
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=1.2e-99 Score=803.88 Aligned_cols=401 Identities=19% Similarity=0.303 Sum_probs=316.1
Q ss_pred CceEEEEecCCCCC----CCCCceeecccccc-cHHhhhhhhcccChhhhcccCCCCCCCCeEEEEeCCCCC---hh---
Q 010545 33 STFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG---TL--- 101 (507)
Q Consensus 33 ~~F~L~~~~~~~~~----~n~~~itl~Dll~~-~l~~a~l~sF~~Dl~WLl~~~~~~~~~~~i~vv~g~~~~---~~--- 101 (507)
.||||+++++||++ .|.++|||+|||++ +|++|++||||+|++|||++|+.. ++.|+||+++.+. +.
T Consensus 3 ~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~~L~~avlfnF~~Di~WLl~~~~~~--~~~v~iv~~~g~~~~~~~~~~ 80 (470)
T 3sq7_A 3 AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAM 80 (470)
T ss_dssp CEEEEECCTTTSCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTSEECCCGGGC
T ss_pred CceEEEeecCcCccccccCCCCceeHHHhcCCchHHHHHhhhhhhcHHHHHhhCccc--cCceEEEEeCCcccccchhhh
Confidence 58999999999986 67899999999997 688999999999999999999863 3456777644321 11
Q ss_pred -hhhhhcCCCceEEecCCCCCCCCCccceeeEeeeCCc-cEEEEeCCCCCccccccccceEEEeecCCCCCCCCCCCCCc
Q 010545 102 -EHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGF 179 (507)
Q Consensus 102 -~~~~~~~~~n~~~~~p~mp~~fGthHSKmmlL~y~d~-lRVVI~TANL~~~DW~~~tQ~vW~qdfP~~~~~~~~~~t~F 179 (507)
+...+. .+|++++.|+|| +|||||||||||+|+|| ||||||||||+++||+..||+|| |+|+++......+++|
T Consensus 81 ~~~~~~~-~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P~l~~~~~~~~s~F 156 (470)
T 3sq7_A 81 DATLAVI-LKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSPLLKIGKEGLPVPF 156 (470)
T ss_dssp CHHHHHH-HTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECCCEEECCCCSCCHH
T ss_pred hHHHHhh-cCCceEEecCCC-CcCCccceeEEEEecCCCEEEEEecCCCChhhhcccceEEE--EccCCcCCCCCCCCcc
Confidence 111222 248999999999 99999999999999998 99999999999999999999999 5555542223456799
Q ss_pred HHHHHHHHHhcCCCccccCCCCCCCcccccccccccccccc-ceEEEEccCCCCCCCccchhcHHHHHHHHhhccccC--
Q 010545 180 ENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK-- 256 (507)
Q Consensus 180 ~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~l~~~DFS~~-~v~LV~SvPG~h~g~~~~~~G~~~L~~~L~~~~~~~-- 256 (507)
++||++||++|+.+.+. ..+++.|++||||.+ +|+||+||||+|. +|||+||+++|+++....
T Consensus 157 k~dL~~yL~~y~~~~l~---------~~~i~~l~~~DFS~~~~v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~ 222 (470)
T 3sq7_A 157 KRSLIEYLNSYHLKDID---------ELITKSVEEVNFAPLSELEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSA 222 (470)
T ss_dssp HHHHHHHHHTTCCHHHH---------HHTHHHHHTEECGGGTTCEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhCCchhH---------HHHHHHHHhCCCCCCCcEEEEEecCCCCc-----cchHHHHHHHHHHhccCCCc
Confidence 99999999999886531 113588999999999 5999999999984 689999999999987642
Q ss_pred CCcccCeEEEecCCCc-Cch----HHHHHHH-HhccCCCCC------CC----CC----------CCCCCcEEEccCchh
Q 010545 257 GFKKSPLVYQFSSLGS-LDE----KWMAELS-SSMSSGFSE------DK----TP----------LGIGEPLIVWPTVED 310 (507)
Q Consensus 257 ~~~~~~i~~Q~SSiGs-l~~----~wl~~f~-~sl~~~~~~------~~----~~----------~~~~~~~IifPT~e~ 310 (507)
..++++|+||+||||+ ++. +||++.+ .+|++.... .+ .| ....+++|||||+||
T Consensus 223 ~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTvee 302 (470)
T 3sq7_A 223 SDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQE 302 (470)
T ss_dssp CSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHTTEEEEEECCBTGG
T ss_pred ccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCccccccccccccccCCccchhhhhccCCCCeEEEcCCHHH
Confidence 2357899999999999 984 5887744 445432211 01 01 013468999999999
Q ss_pred hhcCcccCCCCccccCCCccch--hHHHH---HHHhhhcCC--CCCCCCCCCcceeeeeecC------------CceeEE
Q 010545 311 VRCSLEGYAAGNAIPSPQKNVD--KDFLK---KYWAKWKAS--HTGRSRAMPHIKTFARYNG------------QKLAWF 371 (507)
Q Consensus 311 Vr~S~~G~~~gg~i~~~~~~~~--~~~l~---~~~~kw~~~--~~~R~~~~pH~K~y~r~~~------------~~~~W~ 371 (507)
||+|.+||.+|||||++.++.. +.|++ ++||||+++ ..+|++++||||||+|++. +.++||
T Consensus 303 Vr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~~~~R~~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~ 382 (470)
T 3sq7_A 303 FVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPANSKFYMHCATNSAGPCDASQVFKELEWC 382 (470)
T ss_dssp GTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEC--------CCTTSEESEE
T ss_pred HhcCccccccCceeeecccchHHHHHHHhcccceEecccCcCCCCCCCCcCCceEEEEEecccccccccccCCCceeeEE
Confidence 9999999999999999965543 36877 899999886 5689999999999999874 479999
Q ss_pred EEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcccCCCccccccCCCCccccCCCccchhcccceeeeeecCCCCC
Q 010545 372 LLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSD 451 (507)
Q Consensus 372 lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (507)
|||||||||||||++++ +||||||||||+|..+.+..++.|.++.+.+.+ .
T Consensus 383 LlTSaNLSkaAWG~l~k-----~irsYElGVL~~p~~~~~~~~~~~~~~~~~~~~-----------------------~- 433 (470)
T 3sq7_A 383 LYTSANLSQTAWGTVSR-----KPRNYEAGVLYHSRRLANTRKVTCRTFTRDRRG-----------------------C- 433 (470)
T ss_dssp EEESCCBSHHHHCCSSS-----CCSSBEEEEEEEGGGSSSSCCEEEEEGGGC----------------------------
T ss_pred EEecccCCHHHhhhhcc-----CCcceeeeEEEccccccccceeecccccccccc-----------------------c-
Confidence 99999999999999987 689999999999998766555566655432100 0
Q ss_pred CCCCCcccccccccCCCCCCCCCC-CCCceecCCC
Q 010545 452 AGASSEVVYLPVPYELPPQRYSSE-DVPWSWDKRY 485 (507)
Q Consensus 452 ~~~~~~~~~~~vPy~lP~~~Y~~~-D~Pw~~~~~y 485 (507)
....+.|||||+||++||++. |+|||....|
T Consensus 434 ---~~~~~~~~vPf~lP~~~Y~~~~D~p~~~~~~~ 465 (470)
T 3sq7_A 434 ---AGNPTHVAVPFTLPVIPYDLAEDECFCLALEH 465 (470)
T ss_dssp ------CCSEEESSCSSCEECCTTTCCBCCCCCTT
T ss_pred ---cCCCceeeecCCCCCccCCCCCCcceeeehhh
Confidence 012467999999999999999 9999987654
No 3
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=1.9e-99 Score=815.69 Aligned_cols=404 Identities=19% Similarity=0.275 Sum_probs=308.4
Q ss_pred CCCCceEEEEecCCCCC----CCCCceeecccccc-cHHhhhhhhcccChhhhcccCCCCCCCCeEEEEeCCCCC----h
Q 010545 30 KLPSTFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG----T 100 (507)
Q Consensus 30 ~~~~~F~L~~~~~~~~~----~n~~~itl~Dll~~-~l~~a~l~sF~~Dl~WLl~~~~~~~~~~~i~vv~g~~~~----~ 100 (507)
.+++||||+++++++.+ +|.++|||+|||++ +|++|++||||+|++|||++|+.. +.+|+||||+.+. +
T Consensus 77 ~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~~~l~~a~~~nF~~Di~WLl~~~~~~--~~~v~iv~g~~~~~~~~r 154 (544)
T 1q32_A 77 AKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEA 154 (544)
T ss_dssp --CCEEEEECCTTTTCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTCEECCCG
T ss_pred CCCCCeEEEEecccCcccccCCCCCceeHHHHcCCchHHHHHHHHHHHhHHHHHhhCccc--CCcEEEEecCCcCCchhh
Confidence 47899999999999875 58899999999987 699999999999999999999853 3378888886531 1
Q ss_pred hh--hhhhcCCCceEEecCCCCCCCCCccceeeEeeeCCc-cEEEEeCCCCCccccccccceEEEeecCCCCCCCCCCCC
Q 010545 101 LE--HMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEEC 177 (507)
Q Consensus 101 ~~--~~~~~~~~n~~~~~p~mp~~fGthHSKmmlL~y~d~-lRVVI~TANL~~~DW~~~tQ~vW~qdfP~~~~~~~~~~t 177 (507)
.+ ...+...+|+++|+|+||. |||||||||||+|+|| ||||||||||+++||+++||+||+|||+.+. +.+.++
T Consensus 155 ~~~~~~~~~~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~DW~~~tQ~vW~sp~lp~~--s~g~~~ 231 (544)
T 1q32_A 155 RAMDATLAVILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIG--KEGLPV 231 (544)
T ss_dssp GGCCHHHHHHHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEEEECCCEEEC--CCSSCC
T ss_pred hhhhHHhhccCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEEeCCCCChHHhccccceEEECCccccc--CCCCCC
Confidence 11 1111124589999999998 9999999999999998 9999999999999999999999999954322 234579
Q ss_pred CcHHHHHHHHHhcCCCccccCCCCCCCcccccccccccccccc-ceEEEEccCCCCCCCccchhcHHHHHHHHhhcc--c
Q 010545 178 GFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECT--F 254 (507)
Q Consensus 178 ~F~~dL~~yL~ay~~~~~~~~~~~l~~~~i~~~~l~~~DFS~~-~v~LV~SvPG~h~g~~~~~~G~~~L~~~L~~~~--~ 254 (507)
+|++||++||++|+.+.+..+ | ++.|++||||.+ +|+||+||||+|.| |||+||+++|++++ .
T Consensus 232 ~Fk~dL~~yL~ay~~~~l~~~--------i-i~~l~~~DFS~~~~v~lV~SvPG~h~~-----~G~~~L~~~L~~~~~~~ 297 (544)
T 1q32_A 232 PFKRSLIEYLNSYHLKDIDEL--------I-TKSVEEVNFAPLSELEFVYSTPSKFQS-----SGLLSFYNKLEKLSAGT 297 (544)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH--------T-HHHHHTEECGGGTTCEEEEECCCTTSC-----CHHHHHHHHHHHTC---
T ss_pred chHHHHHHHHHHcCCcccchH--------H-HHHHHhcCcccCCceEEEEecCCccCC-----ccHHHHHHHHHHhhccC
Confidence 999999999999998643221 1 478999999999 99999999999998 59999999999987 3
Q ss_pred cCCCcccCeEEEecCCCc-Cc-hHHHHHHHHhccC---CC-----CC-CCCCC---------------CCCCcEEEccCc
Q 010545 255 EKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS---GF-----SE-DKTPL---------------GIGEPLIVWPTV 308 (507)
Q Consensus 255 ~~~~~~~~i~~Q~SSiGs-l~-~~wl~~f~~sl~~---~~-----~~-~~~~~---------------~~~~~~IifPT~ 308 (507)
....++.+|+||+||||+ ++ ++||++|..+|.+ |. .. ...+. ...+++|||||+
T Consensus 298 ~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~~~~~~~l~~~~~~~~~~~~IIfPT~ 377 (544)
T 1q32_A 298 SASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTE 377 (544)
T ss_dssp ---CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHHTEEEEEECCBS
T ss_pred CCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCcccccccccccccccchhcccccccCCCceEEcCCH
Confidence 333346899999999999 66 5887766654422 21 11 00000 035789999999
Q ss_pred hhhhcCcccCCCCccccCCCc---cchhHHHHHHHhhhcC----CCCCCCCCCCcceeeeeec------------CCcee
Q 010545 309 EDVRCSLEGYAAGNAIPSPQK---NVDKDFLKKYWAKWKA----SHTGRSRAMPHIKTFARYN------------GQKLA 369 (507)
Q Consensus 309 e~Vr~S~~G~~~gg~i~~~~~---~~~~~~l~~~~~kw~~----~~~~R~~~~pH~K~y~r~~------------~~~~~ 369 (507)
++||+|.+||.+|||||++.+ +..++|+++++|+|.. ..++|+++|||||+|+|++ .+.++
T Consensus 378 e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~s~R~~a~PHiKty~r~~~~~~~~~~~~~~~~~i~ 457 (544)
T 1q32_A 378 QEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPAHSKFYMHCATNSAGPCDASQVFKELE 457 (544)
T ss_dssp GGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEECC-------CTTSEES
T ss_pred HHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCccccCCCCCccCceEEEEeeccccccccccCCCcccee
Confidence 999999999999999998643 2335799999999987 5679999999999999986 25799
Q ss_pred EEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCccc-CCC--ccccccCCCCccccCCCccchhcccceeeeeec
Q 010545 370 WFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKR-HGC--GFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTW 446 (507)
Q Consensus 370 W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (507)
|+||||||||+||||++++ +|+|||||||| |..+. +.. .++|..
T Consensus 458 W~lltSaNLSkaAWG~~~k-----~irnyElGVL~-P~~~~~~~~~~~~p~~~--------------------------- 504 (544)
T 1q32_A 458 WCLYTSANLSQTAWGTVSR-----KPRNYEAGVLY-HSRRLANTRKVTCRTFT--------------------------- 504 (544)
T ss_dssp EEEEESCCBSHHHHCCSSS-----CCSSBEEEEEE-EGGGC---CCEEEEEGG---------------------------
T ss_pred EEEEccccCCHHHhhhhhc-----cccceEeEEEe-cccccccccceeccccc---------------------------
Confidence 9999999999999999886 79999999999 65421 110 011100
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCCCCceecCCCCC
Q 010545 447 HGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTK 487 (507)
Q Consensus 447 ~~~~~~~~~~~~~~~~vPy~lP~~~Y~~~D~Pw~~~~~y~~ 487 (507)
.+.. +.....+.|||||++|++||+++|+||+++.+|.+
T Consensus 505 -~d~~-~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~~ 543 (544)
T 1q32_A 505 -RDRR-GCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHEN 543 (544)
T ss_dssp -GC--------CCSEEESSCSSCEECCTTTCCBCCC-----
T ss_pred -ccCc-ccccCcccccccCCCCcccCCCCCCCccccccccc
Confidence 0000 00012357999999999999999999999999974
No 4
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=87.84 E-value=0.44 Score=41.74 Aligned_cols=39 Identities=28% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 010545 353 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 406 (507)
Q Consensus 353 ~~pH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 406 (507)
...|.|+++-.. .++++||+|++..+.. .|.|++|++..
T Consensus 91 ~~~H~K~~iiD~----~~~~iGS~N~~~~~~~-----------~n~E~~~~i~~ 129 (155)
T 1byr_A 91 PIQHDKVIIVDN----VTVETGSFNFTKAAET-----------KNSENAVVIWN 129 (155)
T ss_dssp SCCCCCEEEETT----TEEEEESCCBSHHHHH-----------TSCEEEEEEES
T ss_pred ccccceEEEECC----CEEEEECCCCCccccc-----------cCcccEEEEcC
Confidence 468999988743 4899999999987543 47899998843
No 5
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=84.88 E-value=0.9 Score=42.17 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=30.6
Q ss_pred CCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 010545 352 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 404 (507)
Q Consensus 352 ~~~pH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~ 404 (507)
...+|.|+++-.. .++++||+|+|..|.. .|+|.++++
T Consensus 120 ~~~~H~K~~viD~----~~~~~GS~N~t~~~~~-----------~n~E~~~~i 157 (196)
T 4ggj_A 120 LGYMHHKFAIVDK----KVLITGSLNWTTQAIQ-----------NNRENVLIM 157 (196)
T ss_dssp SSCCCCEEEEETT----TEEEEESCCBCHHHHH-----------HCCEEEEEE
T ss_pred cccccCcEEEEcc----eEEEecCccCChhhhc-----------ccceeEEEE
Confidence 4567999988643 4799999999998864 489999887
No 6
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=81.88 E-value=0.91 Score=47.95 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=33.3
Q ss_pred CCCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 010545 351 SRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 405 (507)
Q Consensus 351 ~~~~pH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 405 (507)
.+...|.|+++-.. .|+++||+||+..++. .|+|+||++.
T Consensus 359 ~~~~lHaK~~vvD~----~~~~vGS~N~d~RS~~-----------lN~E~~~~i~ 398 (458)
T 3hsi_A 359 GDNTYHLKGVWVDD----RYILLTGNNLNPRAWR-----------LDAENGLLIY 398 (458)
T ss_dssp TTBEECCCEEEETT----TEEEEECCCCSHHHHH-----------TCEEEEEEEE
T ss_pred CCCceeEEEEEECC----eEEEecCCCCCcchhh-----------hCceeEEEEe
Confidence 45788999988654 5999999999988774 5899999985
No 7
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=75.62 E-value=2.3 Score=36.93 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.2
Q ss_pred CCCCccceeeEeeeCCccEEEEeCCCCCccccc-cccceEEEee
Q 010545 122 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 164 (507)
Q Consensus 122 ~fGthHSKmmlL~y~d~lRVVI~TANL~~~DW~-~~tQ~vW~qd 164 (507)
+.+.+|+|++|. |+-.++|.|+|+...... +.+.++.+.+
T Consensus 89 ~~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 89 NFPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred CcccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 457899999998 788899999999975332 3344555544
No 8
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=72.44 E-value=2 Score=45.59 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCCccceeeEeeeCCccEEEEeCCCCCccccc
Q 010545 122 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN 154 (507)
Q Consensus 122 ~fGthHSKmmlL~y~d~lRVVI~TANL~~~DW~ 154 (507)
.++.||.|++|. ||-.++|.++|++..+|-
T Consensus 162 ~~~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~ 191 (506)
T 1v0w_A 162 AFSWNHSKILVV---DGQSALTGGINSWKDDYL 191 (506)
T ss_dssp TTBCBCCCEEEE---TTTEEEEESCCCCHHHHT
T ss_pred ccccceeeEEEE---CCcEEEeeccccCccccc
Confidence 568999999998 888899999999765553
No 9
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=62.69 E-value=4.5 Score=37.49 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.7
Q ss_pred eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 010545 369 AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 405 (507)
Q Consensus 369 ~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 405 (507)
.++++||+|++..|-. .|||.+|++.
T Consensus 165 ~~v~~GS~N~t~~s~~-----------~N~E~~~vi~ 190 (220)
T 4gel_A 165 SIVISGSVNWTALGLG-----------GNWENCIITA 190 (220)
T ss_dssp CEEEEESCCBSHHHHH-----------TSBEEEEEEC
T ss_pred ceEEecCccccccccc-----------cCceEEEEEE
Confidence 5899999999988753 5899999873
No 10
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=55.35 E-value=8.9 Score=35.28 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=30.0
Q ss_pred CCCCCccceeeEeeeCCccEEEEeCCCCCccccc-cccceEEEee
Q 010545 121 ISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 164 (507)
Q Consensus 121 ~~fGthHSKmmlL~y~d~lRVVI~TANL~~~DW~-~~tQ~vW~qd 164 (507)
.+.|.+|.|++|. |+-.+++.|+|++..-.. +.+.++.+.|
T Consensus 118 ~~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~~ 159 (196)
T 4ggj_A 118 QDLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIMED 159 (196)
T ss_dssp CSSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEECC
T ss_pred cccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEEC
Confidence 3568899999998 788899999999876533 2344555543
No 11
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=44.91 E-value=19 Score=37.96 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.0
Q ss_pred CCCccceeeEeeeCCccEEEEeCCCCCccccccccceEEEee
Q 010545 123 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 164 (507)
Q Consensus 123 fGthHSKmmlL~y~d~lRVVI~TANL~~~DW~~~tQ~vW~qd 164 (507)
-+..|+|+||. |+-.++|.|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 45899999998 788899999999887774 55666665
No 12
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=33.82 E-value=34 Score=37.86 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCCcceeeeeec--CCce-eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 010545 353 AMPHIKTFARYN--GQKL-AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 405 (507)
Q Consensus 353 ~~pH~K~y~r~~--~~~~-~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~ 405 (507)
.-.|.|+.+-.. ++.+ .|+++||+|+....++ .|.|+||++.
T Consensus 431 ~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~-----------~n~D~~l~i~ 475 (687)
T 1xdp_A 431 LKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR-----------LYTDYSLLTA 475 (687)
T ss_dssp CEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG-----------TEEEEEEEEC
T ss_pred ccccceEEEEEeccCCeEEEEEEEeCCcCCcchhh-----------hcceEEEEEe
Confidence 337999977553 3455 8999999999876543 3689999885
No 13
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=32.22 E-value=30 Score=38.32 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=30.7
Q ss_pred CCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 010545 352 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 406 (507)
Q Consensus 352 ~~~pH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~~P 406 (507)
+.+-|.|+|.--+++ -.|+|+||||+..-.- -+|+|+++.+.-
T Consensus 587 r~Leh~rI~~f~~~d-d~~~~IGSAN~d~Rsl-----------~~n~Ev~~~I~d 629 (687)
T 1xdp_A 587 RYLEHDRVYIFENGG-DKKVYLSSADWMTRNI-----------DYRIEVATPLLD 629 (687)
T ss_dssp SSEECCCEEEECGGG-SCEEEEESCCBSHHHH-----------HSEEEEEEECCS
T ss_pred HHhhCCeEEEEcCCC-CCEEEEEcCccchhhh-----------hhheeeeEEecC
Confidence 456788987654432 3599999999975432 269999998743
No 14
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=29.35 E-value=24 Score=36.93 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.3
Q ss_pred CCCCccceeeEeeeCCccEEEEeCCCCCccccc-cccceEEEeecCCCCCCCCCCCCCcHHHHHHHHHhc
Q 010545 122 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTL 190 (507)
Q Consensus 122 ~fGthHSKmmlL~y~d~lRVVI~TANL~~~DW~-~~tQ~vW~qdfP~~~~~~~~~~t~F~~dL~~yL~ay 190 (507)
..|.+|+|.|++ |+-.++|.|+||.+.-+. +.+.++.+.|=. ..|..+|...+..+
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~----------~~l~~~l~~~f~~~ 415 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYDPQ----------QQLLAQVEKEQNQI 415 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEECTT----------CSSHHHHHHHHHHH
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeCCc----------HHHHHHHHHHHHHH
Confidence 468999999998 677899999999987664 345677776521 23566666555543
No 15
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=28.17 E-value=47 Score=32.33 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=38.1
Q ss_pred hHHHHHHHhhhcCCC--CCCCCCCCcceeeeeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 010545 333 KDFLKKYWAKWKASH--TGRSRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 404 (507)
Q Consensus 333 ~~~l~~~~~kw~~~~--~~R~~~~pH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~k~~~ql~i~nyElGVl~ 404 (507)
|+-+...+. |..+. .. +..+.|-|.|.-.+++.. =+++||.||+-. | ...|-||.|++
T Consensus 82 KQavEElL~-cGvev~IiN-rkRi~HaK~Yg~~~n~g~-~LIV~SgNfT~p--G---------msQNvE~slll 141 (358)
T 2c1l_A 82 RQVVEELLN-RGVEVHIIN-RKRILHAKLYGTSNNLGE-SLVVSSGNFTGP--G---------MSQNIEASLLL 141 (358)
T ss_dssp HHHHHHHHH-TTCEEEEEE-CSSCBCCEEEEEEETTEE-EEEEESCCBSTT--T---------TTTSBEEEEEE
T ss_pred HHHHHHHHh-cCCceEEee-eeeecchhhhcccCCCce-EEEEecCCcccc--c---------cccceeEEEEE
Confidence 444555543 43321 12 346889999988776554 488999999743 1 34788999887
No 16
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=27.01 E-value=40 Score=32.77 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCCCccceeeEeeeCCccEEEEeCCCCCccc
Q 010545 122 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVD 152 (507)
Q Consensus 122 ~fGthHSKmmlL~y~d~lRVVI~TANL~~~D 152 (507)
.--.+|+|.-+.+-.+|.-+||.|+||+-.-
T Consensus 100 rkRi~HaK~Yg~~~n~g~~LIV~SgNfT~pG 130 (358)
T 2c1l_A 100 RKRILHAKLYGTSNNLGESLVVSSGNFTGPG 130 (358)
T ss_dssp CSSCBCCEEEEEEETTEEEEEEESCCBSTTT
T ss_pred eeeecchhhhcccCCCceEEEEecCCccccc
Confidence 5667899999999999999999999999765
No 17
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=22.23 E-value=53 Score=34.47 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=26.4
Q ss_pred CCCcceeeeeecCCceeEEEEeccccchhhhhccc
Q 010545 353 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQ 387 (507)
Q Consensus 353 ~~pH~K~y~r~~~~~~~W~lltSaNLS~aAWG~~~ 387 (507)
..+|+|+.+-.-.+.+ -+.|.||||...-||...
T Consensus 116 GthHsKmmiL~y~~gl-RVVI~TANL~~~DW~~~t 149 (464)
T 1jy1_A 116 GTHHTKMMLLLYEEGL-RVVIHTSNLIHADWHQKT 149 (464)
T ss_dssp CCBCCCEEEEEESSCE-EEEEECCCBSGGGGTSSB
T ss_pred cccchhhheeecCCce-EEEEeCCCCChhHhcccc
Confidence 4679999654443444 599999999999999964
Done!