BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010547
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/434 (35%), Positives = 223/434 (51%), Gaps = 24/434 (5%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXX 122
V I+ G I+S ++E +S G +D + PG++DVH H ++PGRTEWEGF S
Sbjct: 26 VAIRNG-IVSAITEPG-SISSDDGPAIDGTGLHLFPGMVDVHVHFNEPGRTEWEGFASGS 83
Query: 123 XXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
DMPLNS+P TI+ E L K A ++ VD FWGGLVP N L
Sbjct: 84 KSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPG---NIDHL 140
Query: 183 EALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEK--GSERH 240
+ L + GV+G K+FM G +DF ++ + +G+ +A L VHAE + +
Sbjct: 141 QDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTT 200
Query: 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 300
+ +E+ L + YS + RP E A+ +L A+ T +HI H
Sbjct: 201 IAIEEQRLTVKDYS---EARPIVSELEAVERILRFAQLT-------CCPIHICHVSSRKV 250
Query: 301 XXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360
+AK G +++VETCPHYL FS +E + KCAPP+R+ E LW+ LM G
Sbjct: 251 LKRIK-QAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPPLRERQEVEDLWDGLMAG 309
Query: 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWW 419
ID++SSDHSP++P++K + WGGI+ Q L V + G K + L Q+
Sbjct: 310 EIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLL 367
Query: 420 SERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGK 478
S PAK G KG I +G A + + + L N ++ +HP IS Y+G+R GK
Sbjct: 368 STEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTL-NASDLYYRHP-ISPYVGQRFRGK 425
Query: 479 VLATISRGNLVYKE 492
V TI +G VY++
Sbjct: 426 VKHTICQGKHVYQD 439
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 200/423 (47%), Gaps = 32/423 (7%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 146
+V D V+ PG +D H H+ +PGR+ WEG+ + I+ PLN P+T+
Sbjct: 62 EVXDASGLVVSPGXVDAHTHISEPGRSHWEGYETGTRAAAKGGITTXIEXPLNQLPATVD 121
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI---- 202
+++LK DAA+ ++ +D GGLV +YN L L GV+G F+ G
Sbjct: 122 RASIELKFDAAKGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFXCFVATCGDRGID 178
Query: 203 NDFPMTNASHIKEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYL 257
NDF N +G L +P+LVH E E G E K E + Y+
Sbjct: 179 NDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYV 232
Query: 258 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 317
+RP E AIR +L +AK G LH+ H A+ G IT
Sbjct: 233 ASRPVFTEVEAIRRVLYLAK-------VAGCRLHVCHVSSPEGVEEV-TRARQEGQDITC 284
Query: 318 ETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELK 377
E+CPHY ++ + T KC+PPIRD N++ WE L +G ID L SDHSP PE K
Sbjct: 285 ESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGXWEKLFNGEIDCLVSDHSPCPPEXK 344
Query: 378 LLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIA 436
GN KAWGGI+ LQ V + +K G +L + A + G KG IA
Sbjct: 345 ---AGNIXKAWGGIAGLQSCXDVXFDEAVQKRGXSLPXFGKLXATNAADIFGLQQKGRIA 401
Query: 437 IGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496
G AD V +P + + L ND + +H +S Y+GR + ++ TI RG+++Y
Sbjct: 402 PGKDADFVFIQPNSSYVLTNDD-LEYRH-KVSPYVGRTIGARITKTILRGDVIYDIEQGF 459
Query: 497 PAA 499
P A
Sbjct: 460 PVA 462
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 203/451 (45%), Gaps = 31/451 (6%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
R+V+ G+ + +K+G + +I ++ S+T +D G +MPG++D H H+ D
Sbjct: 10 RLVSSDGITEADILVKDGKVAAISADTSDVEASRT---IDAGGKFVMPGVVDEHVHIIDM 66
Query: 111 G-RTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
+ + F +I+MP+ P+T L+ K A + R+ VD +G
Sbjct: 67 DLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQ-RLKVDFALYG 125
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
G VP N + + +AG +G S M S F + + E +A ++V
Sbjct: 126 GGVPGNL---PEIRKMHDAGAVGFXSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVV 182
Query: 230 HAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
HAE E + ++ +K + + Y ++P E AI+ L + K+
Sbjct: 183 HAENETIIQALQKQIK----AAGGKDMAAYEASQPVFQENEAIQRALLLQKEA------- 231
Query: 287 GAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
G L ++H +A++ G + E+ P YL + ++ K APP+R
Sbjct: 232 GCRLIVLHVSNPDGVELIH-QAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRS 290
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
A +LWE L +G ID L SDH E K + KA G L+ LP+ + G
Sbjct: 291 AEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGV 350
Query: 407 KYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDH--PVHM 462
G ++LE+L E+PAKL G KG + +G+ ADL++ + + + ++D +H
Sbjct: 351 NKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHK 410
Query: 463 KHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
P + G ++G + T+ RG +V ++G
Sbjct: 411 YSP----FDGMPVTGAPVLTMVRGTVVAEKG 437
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 146
+++D ++ PG ID+H HL DPG+T E S ++ MP N++P +
Sbjct: 44 EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 102
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 205
T + + ++ VG L + + A LK C + +D
Sbjct: 103 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 155
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 263
P+ ++S +++ L + ++ P++ H E +K L ++ S L +R P
Sbjct: 156 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 208
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 323
EE I +A+ T G H+HI H K G IT E P++
Sbjct: 209 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 260
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
L F+ E+ + + PP+R ++ L E + G ID ++DH+P K L E
Sbjct: 261 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVEF- 319
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 443
A GI LQ LP RK ++L++L ++ PA++ G V G + +G+ AD+
Sbjct: 320 ---AMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADI 375
Query: 444 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
+++P E+ L+ + ++ + G+ L GKV+ TI G +VYK+
Sbjct: 376 TIFDPNKEWILNEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 422
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 33/409 (8%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTIS 146
+++D ++ PG ID+H HL DPG+T E S ++ MP N++P +
Sbjct: 89 EIIDAKGLIVCPGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDN 147
Query: 147 TETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 205
T + + ++ VG L + + A LK C + +D
Sbjct: 148 TTVVNYILQKSK-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGS 200
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPS 263
P+ ++S +++ L + ++ P++ H E +K L ++ S L +R P
Sbjct: 201 PVMDSSVMRKALELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPE 253
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 323
EE I +A+ T G H+HI H K G IT E P++
Sbjct: 254 AEEIQIARDGILAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNH 305
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
L F+ E+ + + PP+R ++ L E + G ID ++DH+P K L E
Sbjct: 306 LLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVE-- 363
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADL 443
A GI LQ LP RK ++L++L ++ PA++ G V G + +G+ AD+
Sbjct: 364 --FAMPGIIGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADI 420
Query: 444 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
+++P E+ L+ + ++ + G+ L GKV+ TI G +VYK+
Sbjct: 421 TIFDPNKEWILNEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 174/418 (41%), Gaps = 37/418 (8%)
Query: 44 QYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y + R + +G I + + I+ V+E N+ +V+D +I PGL+DV
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNA---EVIDVNGKLIAPGLVDV 58
Query: 104 HAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H HL +PG E + + MP N+ P E ++ + +++ +V
Sbjct: 59 HVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHV 117
Query: 164 DVGFWGGL-VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
+V +G + V + + E L G + + +AS + + A+
Sbjct: 118 NVLPYGAITVRQAGSEMTDFETLKELGAFAFTD-------DGVGVQDASMMLAAMKRAAK 170
Query: 223 YKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278
++ H E + KG K S L P E I + +A+
Sbjct: 171 LNMAVVAHCEENTLINKGCVHEGKF--------SEKHGLNGIPSVCESVHIARDILLAE- 221
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338
A H H+ H +AK G +T E PH+L ++IP D F
Sbjct: 222 ------AADCHYHVCHVSTKGSVRVIR-DAKRAGIKVTAEVTPHHLVLCEDDIPSADPNF 274
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
K PP+R + E L E L+DG IDM+++DH+P E K +A GI+ +
Sbjct: 275 KMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEK---AQGIERAPFGITGFETAF 331
Query: 399 PVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELD 455
P+ ++ K G +TLEQL + +E+PA G + G + G AD+ + + E E E+D
Sbjct: 332 PLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRTADITIIDLEQEEEID 388
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/462 (25%), Positives = 202/462 (43%), Gaps = 40/462 (8%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
W+ +VT V I+ +++I + + + +D ++PG ID H
Sbjct: 4 WIRGGTVVTAADTYQADVLIEGERVVAIGHQ----LSVNGAEEIDATGCYVIPGGIDPHT 59
Query: 106 HLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV----DAAEK 159
HLD P G + F + ++D L T E+LK + + A
Sbjct: 60 HLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCL-----TKKGESLKSAIATWHEKARG 114
Query: 160 RIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLS 218
+ +D GF + N LE+++++ G+ LK FM N F + + K +
Sbjct: 115 KAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYK--NVFQADDETLFK---T 169
Query: 219 VLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTRPPSWE-EAAIRELLTVA 276
++ + LV E G + + + Y TRPP E EA R + A
Sbjct: 170 LVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTA 229
Query: 277 KDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDG 334
G+ L++VH EA+ G ++ ETCP YLA S + PD
Sbjct: 230 --------LAGSQLYVVHVSCASAVQRIA-EAREKGWNVYGETCPQYLALDVSIMDQPDF 280
Query: 335 D-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGIS 392
+ ++ +PP+R+ N+E LW AL +G + + SDH P K L G+F K G
Sbjct: 281 EGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGP 340
Query: 393 SLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEA 450
++ L + +S G + G ++L Q S + AKL G KG IA+G+ AD+V+++P
Sbjct: 341 LIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDADIVIFDPHV 400
Query: 451 EFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
+ L + H + + + G + G+V++ +SRG+ V ++
Sbjct: 401 KRTLSVE--THHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRD 440
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 121/459 (26%), Positives = 200/459 (43%), Gaps = 36/459 (7%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
W+ + +VT V I +++I S+ + +V+D ++PG ID H
Sbjct: 4 WIRNGTVVTASDTYQADVLIDGEKVVAIGSD----LQATDAEVIDATGYYLLPGGIDPHT 59
Query: 106 HLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
HLD P G + F + ++D L S ++ + A K + +
Sbjct: 60 HLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAV-I 118
Query: 164 DVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
D GF + N + LE+++N G+ L FM + M + + + L
Sbjct: 119 DYGFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNV---LMADDETLFKTLIRAKE 175
Query: 223 YKRPLLVHAEMEKGSERHVK--LEDDTLDTRSYSTYLKTRPPSWE-EAAIREL-LTVAKD 278
+ VHAE + K L + D Y Y TRPP E EA R + LT D
Sbjct: 176 LGALVQVHAENGDVLDYLTKQALAEGNTDP-IYHAY--TRPPEAEGEATGRAIALTALAD 232
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDGD- 335
A L++VH EA+ G ++ ETCP YL +A E PD +
Sbjct: 233 ---------AQLYVVHVSCADAVRRIA-EAREKGWNVYGETCPQYLVLDITALEKPDFEG 282
Query: 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSL 394
++ +PP+R+ N++ LW AL +G + + SDH P K L +F K G +
Sbjct: 283 AKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPII 342
Query: 395 QFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 452
+ + + +S G RK ++L Q S + AKL G KG IA+G+ AD+V+++P +
Sbjct: 343 EDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQR 402
Query: 453 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491
+ + H + + + G ++ G V++ +SRG V +
Sbjct: 403 TISVE--THHMNVDYNPFEGMQVHGDVISVLSRGAFVVR 439
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 188/456 (41%), Gaps = 40/456 (8%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP- 110
IVT + IK+G I I + K +V+D + PG ID H HLD P
Sbjct: 10 IVTATDTYEAHLLIKDGKIAMIGQNLE----EKGAEVIDAKGCYVFPGGIDPHTHLDMPL 65
Query: 111 -GRTEWEGFPSXXXXXXXXXXXXLIDMPLNS--DPSTISTETLKLKVDAAEKRIYVDVGF 167
G + F S +ID L + +P + ET K A + +D GF
Sbjct: 66 GGTVTKDDFESGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHNK---ANGKAVIDYGF 122
Query: 168 WGGLVPENAYNASALE----ALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223
+ + LE L G+ L FM N F + + ++LA
Sbjct: 123 H---LMISEITDDVLEELPKVLEEEGITSLXVFMAYK--NVFQADDGTLY---CTLLAAK 174
Query: 224 KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTRPPSWEEAAIRELLTVAKDTRTD 282
+ LV E G + D + Y TRPP E A + +
Sbjct: 175 ELGALVMVHAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGEATGRACQLTE----- 229
Query: 283 GPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--SAEEIPDGD-TRFK 339
G+ L++VH EA+ G + ETCP YL S E P+ + ++
Sbjct: 230 --LAGSQLYVVHVTCAQAVEKIA-EARNKGLDVWGETCPQYLVLDQSYLEKPNFEGAKYV 286
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDH-SPTVPELKLLDEGNFLKAWGGISSLQFVL 398
+PP+R+ ++E LW AL +G + L SD S K L G+F K G ++ +
Sbjct: 287 WSPPLREKWHQEVLWNALKNGQLQTLGSDQCSFDFKGQKELGRGDFTKIPNGGPIIEDRV 346
Query: 399 PVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDN 456
+ +S G K G +TL Q S R AKL G KG I +G+ ADLV+++P E +
Sbjct: 347 SILFSEGVKKGRITLNQFVDIVSTRIAKLFGLFPKKGTIVVGSDADLVIFDPNIERVISA 406
Query: 457 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
+ H +A+ G +++G+ ++ + RG V ++
Sbjct: 407 E--THHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRD 440
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 181/452 (40%), Gaps = 29/452 (6%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
IVT G+ + IK+G I I + +D + PG IDVH H++
Sbjct: 10 IVTADGISRADLGIKDGKITQIGGAL-----GPAERTIDAAGRYVFPGGIDVHTHVETVS 64
Query: 112 RTEWEGFPSXXXXXXXXX--XXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
++D +++ K A K +D G+
Sbjct: 65 FNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSA-IDYGYHI 123
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
++ LE L + G+ FM G+N M + + + L + ++V
Sbjct: 124 IVLDPTDSVIEELEVLPDLGITSFXVFMAYRGMN---MIDDVTLLKTLDKAVKTGSLVMV 180
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLK-TRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288
HAE G + + ++ Y +RPP E A L +A+ A
Sbjct: 181 HAE--NGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN-------A 231
Query: 289 HLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEI--PDGD-TRFKCAPPIR 345
++IVH M AK+ G ETC HYL + E++ PD + ++ PP R
Sbjct: 232 PIYIVHVTCEESLEEV-MRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPAR 290
Query: 346 DAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 404
+ + LW AL +G + +SSDH K +F G ++ L + +
Sbjct: 291 AKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQG 350
Query: 405 GRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMK 463
+ ++L Q + RPAK+ G KG IA+G+ AD+V+W+PEAE ++ +H
Sbjct: 351 VNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQT-AMH-N 408
Query: 464 HPSISAYLGRRLSGKVLATISRGNLVYKEGNH 495
S+Y G ++ G + RG ++ EG++
Sbjct: 409 AMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSY 440
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 173/407 (42%), Gaps = 38/407 (9%)
Query: 51 RIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
R+V +G A V I EG I+S+ + QVVD + PG +D+HAHL +
Sbjct: 8 RLVDARGERGPADVLIGEGRILSL-------EGGEAKQVVDGTGCFLAPGFLDLHAHLRE 60
Query: 110 PGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG E S L+ P N+ P + E ++ + A+
Sbjct: 61 PGEEVKEDLFSGLLAAVRGGYTDLVSXP-NTKPPVDTPEAVRALKEKAK----------- 108
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSG---INDFPMTN--ASHIKEGLSVLARYK 224
L + A+AL L + +G + D TN A + GL A
Sbjct: 109 ALGLARLHPAAALTEKQEGKTLTPAGLLREAGAVLLTDDGRTNEDAGVLAAGLLXAAPLG 168
Query: 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
P+ VHAE + G R+ D L + L PP E A I L V + P
Sbjct: 169 LPVAVHAE-DAGLRRNGVXNDGPL---ADLLGLPGNPPEAEAARIARDLEVLRYALRRSP 224
Query: 285 AEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344
A LH+ H EAK G +T E PH+L + E + D FK APP+
Sbjct: 225 AT-PRLHVQHLSTKRGLELVR-EAKRAGLPVTAEATPHHLTLTEEALRTFDPLFKVAPPL 282
Query: 345 RDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403
R ++E L E L+DG +D +++DH+P T+ E E + L+A GI SL+ P+ ++
Sbjct: 283 RGEEDREALLEGLLDGTLDAIATDHAPHTLAE----KEKDLLRAPFGIPSLEVAFPLLYT 338
Query: 404 -YGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 449
K G L++L +++ P ++ G + + G A LV+ P+
Sbjct: 339 ELHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEEGAEASLVLLSPK 384
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 100/447 (22%), Positives = 178/447 (39%), Gaps = 42/447 (9%)
Query: 53 VTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR 112
V G + A + +G +I ++ P N ++D + PG +DVH HL +PG
Sbjct: 9 VLQNGELQQADILIDGKVIKQIAPAIEPSNGV--DIIDAKGHFVSPGFVDVHVHLREPGG 66
Query: 113 TEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETL----KLKVDAAEKRIYVDVGFW 168
E + + P N+ P S E KL D A+ R+ + +
Sbjct: 67 EYKETIETGTKAAARGGFTTVCPXP-NTRPVPDSVEHFEALQKLIDDNAQVRV---LPYA 122
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
+ AL+ G G+ + AS EG A+ + ++
Sbjct: 123 SITTRQLGKELVDFPALVKEGAFAFTD----DGVG---VQTASXXYEGXIEAAKVNKAIV 175
Query: 229 VHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
H E + G H RS + P E I + +A+ A
Sbjct: 176 AHCEDNSLIYGGAXHEG-------KRSKELGIPGIPNICESVQIARDVLLAE-------A 221
Query: 286 EGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIR 345
G H H+ H +AK G +T E PH+L + ++IP + +K PP+R
Sbjct: 222 AGCHYHVCHVSTKESVRVI-RDAKRAGIHVTAEVTPHHLLLTEDDIPGNNAIYKXNPPLR 280
Query: 346 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG 405
++E L E L+DG ID +++DH+P + K KA GI + P+ +++
Sbjct: 281 STEDREALLEGLLDGTIDCIATDHAPHARDEKAQPXE---KAPFGIVGSETAFPLLYTHF 337
Query: 406 RKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464
K G TL+QL + + +P + + G + +ADL + + ++E E+ + +
Sbjct: 338 VKNGDWTLQQLVDYLTIKPCETF-NLEYGTLKENGYADLTIIDLDSEQEIKGED--FLSK 394
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYK 491
+ ++G ++ G + T G + ++
Sbjct: 395 ADNTPFIGYKVYGNPILTXVEGEVKFE 421
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 180/462 (38%), Gaps = 51/462 (11%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP- 110
IVT V+++ G I+ I N + +D +MPG ID H HL+ P
Sbjct: 10 IVTADLTYKADVKVEGGRIVEIGP------NLSGAETLDATGCYVMPGGIDPHTHLEMPF 63
Query: 111 -GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF-- 167
G + F S ++D L S P E L + D R D F
Sbjct: 64 MGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMW-DNKSTRANCDYSFHM 121
Query: 168 ----WGGLVPENAYNASALEALL-NAGVLGLKSFMCPSG---INDFPMTNASHIKEGLSV 219
WG E +N +E ++ + G+ FM G ++D M ++ L
Sbjct: 122 AITWWG----EQVFNE--METIVKDKGINTFXHFMAYKGALMVDDDEMFSSFQRCAALGA 175
Query: 220 LARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKD 278
L LVHAE + ++ KL + Y +RP E A + +A
Sbjct: 176 LP------LVHAENGDVVAQLQAKLLAEGNSGPEAHAY--SRPAEVEGEAANRAIMIAD- 226
Query: 279 TRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGD--- 335
G ++IVH A+ G + E +L E D D
Sbjct: 227 ------MAGCPVYIVHTSCEQAHEAIR-RARAKGMRVFGEPLIQHLTLDETEYFDKDWDH 279
Query: 336 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 394
R +PP R+ +++ LW L G + ++++DH E K G+F + G L
Sbjct: 280 AARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGL 339
Query: 395 QFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 452
+ +P+ W+YG G +T+ + + S AK+ KGAI +G ADLVVW+P+
Sbjct: 340 EDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSK 399
Query: 453 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ + + G+ ++G T++RG + +EG
Sbjct: 400 TISAK--TQQSAIDYNVFEGKTVTGLPRFTLTRGVVSIEEGT 439
>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From
Porphyromonas Gingivalis
Length = 452
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 189/457 (41%), Gaps = 31/457 (6%)
Query: 47 LTSKRIVTPKG-VISGAVEIKEGNIISIVSEEDWPR--NSKTGQVVDYGEAVIMPGLIDV 103
L ++T +G G+V I +G IS + E + P N +V++ + PG ID
Sbjct: 7 LLRNALITNEGKTFPGSVXI-DGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDD 65
Query: 104 HAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H +PG T S D P + P+T L+ + A+ +
Sbjct: 66 QVHFREPGLTHKATIASESRAAVAGGVTSFXDXPNTNPPTTXWERLLEKRQIGADT-AWA 124
Query: 164 DVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223
+ GF+ G +N ++ L V GL F+ S N + N +++ +
Sbjct: 125 NYGFFFGGTNDNIDEIKRVDKHL---VPGLXLFLGSSTGNXL-VDNKETLEK---IFGEC 177
Query: 224 KRPLLVHAEME---KGSERHVKLE-DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDT 279
+ H E E + ++ H K + + LD + +++ + +A E + +A+
Sbjct: 178 DLLIATHCEKEEIIRANKEHYKAKYGNDLDIH-FHPLIRSEEACYRSSA--EAVELAERX 234
Query: 280 RTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFK 339
A LHI+H + T IT E C H+L FS + R K
Sbjct: 235 -------NARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIK 287
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399
P I+ +++E L A+ +G ID++++DH+P + K EG+ L+A G +Q L
Sbjct: 288 WNPAIKKESDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLL 344
Query: 400 VTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
+ ++E++ S + PA L +G I G +ADLV+ +P + + D+
Sbjct: 345 ALLELCNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADNI 404
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496
+ + S + G S V T G L Y +G A
Sbjct: 405 LSL--CGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLA 439
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 171/424 (40%), Gaps = 40/424 (9%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEW--EGFPSXXXXXXXXXXXXLIDM--PLNSDP 142
+V+D + PG ID H H+ P + + + I+M P +D
Sbjct: 41 EVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDD 100
Query: 143 STISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPS-- 200
+ E +L AE Y D F + + L ++ G+ F+
Sbjct: 101 AL---EGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIVADGISSFXIFLSYKNF 157
Query: 201 -GINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKT 259
G++D M + + L V+ + H E +E +L+ L
Sbjct: 158 FGVDDGEMYQTLRLAKELGVI------VTAHCE---NAELVGRLQQKLLSEGKTG----- 203
Query: 260 RPPSWEEAAIRELLTVAKDTR--TDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 317
P W E + E + R T GA ++VH M AK G I +
Sbjct: 204 --PEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLSCKPALDAA-MAAKARGVPIYI 260
Query: 318 ETC-PHYL--AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVP 374
E+ PH+L AE ++ +PP+RD N++ LW+AL G ID + +DH P
Sbjct: 261 ESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDT 320
Query: 375 ELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SK 432
E KLL + F GI +++ + + ++YG G + + + S + AKL G K
Sbjct: 321 EQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRK 380
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS--ISAYLGRRLSGKVLATISRGNLVY 490
G IA+G+ ADLVV++P+ + V +H + + + G + G+ RG +
Sbjct: 381 GTIAVGSDADLVVYDPQYRGTIS----VKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAV 436
Query: 491 KEGN 494
++G
Sbjct: 437 RDGQ 440
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 122/515 (23%), Positives = 195/515 (37%), Gaps = 94/515 (18%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
I T + + + + G + I + D S +V+D A I PG ID H H+D+P
Sbjct: 12 ICTASDIYAAEIAVNNGKVQLIAASIDPSLGS---EVIDAEGAFITPGGIDAHVHVDEPL 68
Query: 112 R-------TEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA-AEKRIYV 163
+ T S PS ++ E++KL VD +E+ +Y
Sbjct: 69 KLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALA-ESVKLDVDEYSEQTLYC 127
Query: 164 DVGFWGGLVPENAYNASALEAL---LNA-----GVLGLKSFMCPSG--INDFPMTNASHI 213
D G L + A E L L A GV + FM G I+D+ + +A +
Sbjct: 128 DYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVXMFMTYPGLQISDYDIMSAMYA 187
Query: 214 --KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
K G + + + +V +E LE+ L Y + +RP E A
Sbjct: 188 TRKNGFTTMLHAENGDMVKWMIEA-------LEEQGLTDAYY--HGVSRPSIVEGEATNR 238
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYL------- 324
+T+A T D P H+ +A+T G + ETCP Y
Sbjct: 239 AITLA--TTMDTPILFVHV------SSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAIT 290
Query: 325 ------------------AFSAEEIPDGDTRFK-----CAPPIRDAANKEKLWEALMDGH 361
+ S + D RF C+PPIR ++ +W+ + +G
Sbjct: 291 RCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGT 350
Query: 362 IDMLSSDH--------SPTVPELKLLD-----EGNFLKAWGGISSLQFVLPVTWSYGRKY 408
++ SDH + T + + D G F G+ + +P+ + YG
Sbjct: 351 FTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLR 410
Query: 409 G--VTLEQLASWWSERPAKLAGQV-SKGAIAIG-NHADLVVWEPEAEFELDNDHP----- 459
G ++ +L PAK+ G KG+I G + ADLV+W P+ + N P
Sbjct: 411 GNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITN 470
Query: 460 VHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 493
M+H + + G + TI +G +VYKEG
Sbjct: 471 KLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEG 505
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 318
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 220 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 271
Query: 319 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 373
T + + D + PP+R D L L + +++++SDH P
Sbjct: 272 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 331
Query: 374 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 431
+ K + + +F K G+S +Q + V W G G E + + S AKL
Sbjct: 332 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 391
Query: 432 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491
KG I G AD+VVW+PEA + V + + Y R G L TISRG +VY+
Sbjct: 392 KGRIIPGADADVVVWDPEATKTISASTQV--QGGDFNLYENMRCHGVPLVTISRGRVVYE 449
Query: 492 EG 493
G
Sbjct: 450 NG 451
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 318
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 241 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 292
Query: 319 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 373
T + + D + PP+R D L L + +++++SDH P
Sbjct: 293 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 352
Query: 374 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 431
+ K + + +F K G+S +Q + V W G G E + + S AKL
Sbjct: 353 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 412
Query: 432 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 491
KG I G AD+VVW+PEA + ++ + Y R G L TISRG +VY+
Sbjct: 413 KGRIIPGADADVVVWDPEATKTISAS--TQVQGGDFNLYENMRCHGVPLVTISRGRVVYE 470
Query: 492 EG 493
G
Sbjct: 471 NG 472
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/448 (22%), Positives = 174/448 (38%), Gaps = 51/448 (11%)
Query: 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXX 124
E II +S+ P+ +VVD + +++PG ID H H P G + F
Sbjct: 31 ENGIIKEISKNIEPKEGI--KVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGTQA 88
Query: 125 XXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEK-----RIYVDVGFWGGLVPENAYNA 179
+ID + + ++ + K A EK ++V + +W V +
Sbjct: 89 AVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQV------S 142
Query: 180 SALEALLNAGVLGLKSFMCPSGI-NDFPMTNASHIKEGLSVLARYKR---PLLVHAE--- 232
+E L+ G+ SF C N F +T+ +E + R K VHAE
Sbjct: 143 REMEILVKE--RGVNSFXCFMAYKNSFMVTD----QEMYHIFKRCKELGAIAQVHAENGD 196
Query: 233 -MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLH 291
+ +G ++ +++ + S RP + E A + +A T ++
Sbjct: 197 MVFEGQKKMLEMGITGPEGHELS-----RPEALEAEATNRAIVIADSVCTP-------VY 244
Query: 292 IVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR----FKCAPPIR-D 346
IVH K G + E L + + D R F PPIR D
Sbjct: 245 IVHVQSIGAADVICKHRK-EGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPD 303
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
K L + L G +D + +D+ + K + + +F K G++ ++ + + W G
Sbjct: 304 PRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGV 363
Query: 407 KYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464
G +T Q S A++ KG I +G D+V+W+P + D H
Sbjct: 364 NTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKD--THHHA 421
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKE 492
+ + G +++G + TI GN+V+ +
Sbjct: 422 VDFNIFEGIKVTGIAVTTIVAGNIVWSD 449
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 163/426 (38%), Gaps = 43/426 (10%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPST 144
+V+D +++PG ID H H+ P G + F +ID + +
Sbjct: 72 RVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGS 131
Query: 145 I--STETLKLKVD---AAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMC 198
+ + ET + D + ++V V +W V E ++ L+ + GV K FM
Sbjct: 132 LIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEE------MKILVQDKGVNSFKMFM- 184
Query: 199 PSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYS 254
D M + E S VHAE + +G+++ + L
Sbjct: 185 --AYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKML-----ALGITGPE 237
Query: 255 TYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDS 314
+ RP + E A +T+A A L+IVH +A+ +G
Sbjct: 238 GHELCRPEAVEAEATLRAITIAS-------AVNCPLYIVHVMSKSAAKVIA-DARRDGKV 289
Query: 315 ITVETCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDH 369
+ E L + + PP+R D + + L L + + +D+
Sbjct: 290 VYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDN 349
Query: 370 SPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAG 428
K L + +F K G++ ++ + V W G G E + + S AK+
Sbjct: 350 CTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFN 409
Query: 429 QV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGN 487
KG IA+G+ AD+V+W+P+ + H + + + + G G L TISRG
Sbjct: 410 LYPRKGRIAVGSDADIVIWDPKGTRTISAK--THHQAVNFNIFEGMVCHGVPLVTISRGK 467
Query: 488 LVYKEG 493
+VY+ G
Sbjct: 468 VVYEAG 473
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 103/460 (22%), Positives = 170/460 (36%), Gaps = 40/460 (8%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
RI+ V +++G I I P KT ++ +++PG IDV+ +L P
Sbjct: 16 RIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKT---IEANGRMVIPGGIDVNTYLQKP 72
Query: 111 --GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAAEKR-----IYV 163
G T + F +ID + S++ T K A K ++V
Sbjct: 73 SQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHV 132
Query: 164 DVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARY 223
D+ W V E LE L+ G+ SF D + S + E + L
Sbjct: 133 DITSWYDGVREE------LEVLVQDK--GVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGL 184
Query: 224 KRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRT 281
+LVHAE E+ LE ++ +RP E A+ + +A R
Sbjct: 185 GAVILVHAENGDLIAQEQKRILEMGITGPEGHAL---SRPEELEAEAVFRAIAIAG--RI 239
Query: 282 DGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TR 337
+ P ++I + A+ G + E L +
Sbjct: 240 NCP-----VYITKVMSKSAADIIAL-ARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAA 293
Query: 338 FKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 396
F +PP+ D + L L G + + S H P K + + NF G++ ++
Sbjct: 294 FVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEE 353
Query: 397 VLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFEL 454
+ V W G E Q + S AK+ KG IA+G+ AD+V+W+P+ +
Sbjct: 354 RMTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDADVVIWDPDKMKTI 413
Query: 455 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G G L IS+G +V+++GN
Sbjct: 414 TAKS--HKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGN 451
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 95/416 (22%), Positives = 158/416 (37%), Gaps = 39/416 (9%)
Query: 95 VIMPGLIDVHAHLD--DPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKL 152
+++PG IDVH D G T + F +ID + +P T
Sbjct: 75 MVIPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVV-PEPGTSLLAAFDQ 133
Query: 153 KVDAAEKR------IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-F 205
+ A+ + ++VD+ W + E +EAL+ G+ SF+ D F
Sbjct: 134 WREWADSKSCCDYSLHVDISEWHKGIQEE------MEALVKDH--GVNSFLVYMAFKDRF 185
Query: 206 PMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264
+T+ I E LSV+ VHAE + +E ++ D L ++ +RP
Sbjct: 186 QLTDC-QIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILD--LGITGPEGHVLSRPEEV 242
Query: 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYL 324
E A+ +T+A +T+ P L+I +A+ G + E L
Sbjct: 243 EAEAVNRAITIAN--QTNCP-----LYITKVMSKSSAEVIA-QARKKGTVVYGEPITASL 294
Query: 325 AFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 379
+ F +PP+ D + L L G + + S H K +
Sbjct: 295 GTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAV 354
Query: 380 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAI 437
+ NF G + + + V W G E Q + S AK+ KG IA+
Sbjct: 355 GKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAV 414
Query: 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
G+ ADLV+W+P++ + H + + G G L IS+G +V ++G
Sbjct: 415 GSDADLVIWDPDSVKTI--SAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDG 468
>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
N-Acetylglucosamine- 6-Phosphate Deacetylase From
Bacillus Subtilis
Length = 396
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 52 IVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
IVT VI +G V I +G I ++ +E P+ + ++ ++V++PG+ID+H H
Sbjct: 12 IVTENEVIKNGYVGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMIDIHIH 65
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 351 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 410
E + + L DG + L DH P +P L+F V + +YG
Sbjct: 289 ETIAKLLKDGVLIALXCDH-PVIP-------------------LEFAT-VQAATAXRYGA 327
Query: 411 TLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVW 446
E L + PAK+ G + G+I G ADLVVW
Sbjct: 328 KEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVW 364
>pdb|3MKV|A Chain A, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|B Chain B, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|C Chain C, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|D Chain D, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|E Chain E, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|F Chain F, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|G Chain G, Crystal Structure Of Amidohydrolase Eaj56179
pdb|3MKV|H Chain H, Crystal Structure Of Amidohydrolase Eaj56179
Length = 426
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 78 DWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
D P S V+D IMPGLID+H H+
Sbjct: 39 DKPIKSSNAHVIDVKGKTIMPGLIDLHVHV 68
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 68 GNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
G +I+ V E R++ QV+D G A + PGLID H H++
Sbjct: 61 GALIASVHEPASRRDAA--QVIDAGGAYVSPGLIDTHXHIE 99
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 424
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 424
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 424
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1O12|A Chain A, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
pdb|1O12|B Chain B, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
Length = 376
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 52 IVTP-KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
IV P G +G VEI+EG I+ + E PR V+ PG +D H H
Sbjct: 20 IVDPIDGEFTGDVEIEEGKIVKVEKRECIPR------------GVLXPGFVDPHIH 63
>pdb|2I9U|A Chain A, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
pdb|2I9U|B Chain B, Crystal Structure Of Guanine Deaminase From C.
Acetobutylicum With Bound Guanine In The Active Site
Length = 439
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ + +G I S+ S + P K ++D+ +I+PG+ D+HAH
Sbjct: 34 IVVIDGKIASVSS--NLPDKYKGNPIIDFRNNIIIPGMNDLHAH 75
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 424
LSS+ + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSNGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 365 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 424
LSS+ + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSNGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 425 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|3MTW|A Chain A, Crystal Structure Of L-Lysine, L-Arginine Carboxypeptidase
Cc2672 From Caulobacter Crescentus Cb15 Complexed With
N-Methyl Phosphonate Derivative Of L-Arginine
Length = 403
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
V + +G I SI + D T VD ++PGLID+H HLD
Sbjct: 25 VIVTDGRITSIGKKGDAVPAGAT--AVDLPGVTLLPGLIDMHVHLD 68
>pdb|3FEQ|A Chain A, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|B Chain B, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|C Chain C, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|D Chain D, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|E Chain E, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|F Chain F, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|G Chain G, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|H Chain H, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|I Chain I, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|J Chain J, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|K Chain K, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|L Chain L, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|M Chain M, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|N Chain N, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|O Chain O, Crystal Structure Of Uncharacterized Protein Eah89906
pdb|3FEQ|P Chain P, Crystal Structure Of Uncharacterized Protein Eah89906
Length = 423
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 73 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
IV D P + Q +D +MPG ID H H+
Sbjct: 34 IVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 452
LQF+ P KYG +LE A +W E K+ V S AIA D V + E
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 453 ELDNDHPVHM 462
E+D V M
Sbjct: 237 EVDGQKFVEM 246
>pdb|3N2C|A Chain A, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|B Chain B, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|C Chain C, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|D Chain D, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|E Chain E, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|F Chain F, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|G Chain G, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|H Chain H, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|I Chain I, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|J Chain J, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|K Chain K, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|L Chain L, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|M Chain M, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|N Chain N, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|O Chain O, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
pdb|3N2C|P Chain P, Crystal Structure Of Prolidase Eah89906 Complexed With N-
Methylphosphonate-L-Proline
Length = 423
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 73 IVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
IV D P + Q +D +MPG ID H H+
Sbjct: 34 IVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHV 68
>pdb|4DZH|A Chain A, Crystal Structure Of An Adenosine Deaminase From
Xanthomonas Campestris (Target Nysgrc-200456) With Bound
Zn
Length = 472
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 53 VTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ P V+ AV + G I++++ D + V +A +MPGL++ H H
Sbjct: 26 IEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTH 81
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 452
LQF+ P KYG +LE A +W E K+ V S AIA D V + E
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 453 ELDNDHPVHM 462
E+D V M
Sbjct: 237 EVDGQKFVEM 246
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 449
+TLEQ + + PA++ G +G + G AD+VV++P+
Sbjct: 395 MTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPD 434
>pdb|3ICJ|A Chain A, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Furiosus
Length = 534
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 86 GQVVDYGEAVIMPGLIDVHAHLDDPG 111
G+++D +MP D H HLD+ G
Sbjct: 83 GEIIDLKGKFVMPAFFDSHLHLDELG 108
>pdb|2PUZ|A Chain A, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
pdb|2PUZ|B Chain B, Crystal Structure Of Imidazolonepropionase From
Agrobacterium Tumefaciens With Bound Product
N-Formimino-L-Glutamate
Length = 419
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 61 GAVE-----IKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHL 107
GAVE ++ G I E D P + T + D G I P LID H HL
Sbjct: 35 GAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHL 87
>pdb|2GOK|A Chain A, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
pdb|2GOK|B Chain B, Crystal Structure Of The Imidazolonepropionase From
Agrobacterium Tumefaciens At 1.87 A Resolution
Length = 429
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 61 GAVE-----IKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHL 107
GAVE ++ G I E D P + T + D G I P LID H HL
Sbjct: 37 GAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHL 89
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
+ E +I+ + E+ +++ ++D + + PGL+D H H+
Sbjct: 28 VVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHV 70
>pdb|3IGH|X Chain X, Crystal Structure Of An Uncharacterized Metal-Dependent
Hydrolase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 86 GQVVDYGEAVIMPGLIDVHAHLDDPG 111
G++VD +MP D H HLD+ G
Sbjct: 49 GEIVDLKGKYVMPAFFDSHLHLDELG 74
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 137 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 195
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 196 FMC 198
+
Sbjct: 198 HLV 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,927,159
Number of Sequences: 62578
Number of extensions: 622082
Number of successful extensions: 1181
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 68
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)