RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010547
(507 letters)
>gnl|CDD|178392 PLN02795, PLN02795, allantoinase.
Length = 505
Score = 863 bits (2231), Expect = 0.0
Identities = 354/508 (69%), Positives = 414/508 (81%), Gaps = 4/508 (0%)
Query: 1 MENLNLQWRLLPTLTLLAASLFLLVFKDSAKL-SHSECSLLPYNQYWLTSKRIVTPKGVI 59
ME+ LQ R+LP L LLA +F +F + L CSLLP+ + L SKR+VTP GVI
Sbjct: 1 MESALLQLRILPLLALLATLVFFFLFAPALPLQGRDRCSLLPWPHFVLYSKRVVTPAGVI 60
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119
GAVE++ G I+S+ EE+ P++ K V+DYG AV+MPGLIDVH HL++PGRTEWEGFP
Sbjct: 61 PGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEPGRTEWEGFP 120
Query: 120 SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 179
+GTKAAAAGGITTL+DMPLNS PST S ETL+LK++AA+ ++YVDVGFWGGLVPENA+NA
Sbjct: 121 TGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNA 180
Query: 180 SALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSER 239
S LE LL+AG LGLKSFMCPSGINDFPMT A+HIK L VLA+Y RPLLVHAE+ E
Sbjct: 181 SVLEELLDAGALGLKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVES 240
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299
+L+ D RSYSTYLK+RPPSWE+ AIR+LL VAKDTR G AEGAH+HIVHLSDA
Sbjct: 241 DSRLDADP---RSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVAEGAHVHIVHLSDAE 297
Query: 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
SSL+L+ EAK GDS+TVETCPHYLAFSAEEIPDGDTR+KCAPPIRDAAN+E LW+AL+D
Sbjct: 298 SSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGDTRYKCAPPIRDAANRELLWKALLD 357
Query: 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419
G IDMLSSDHSP+ P+LKLL+EGNFL+AWGGISSLQFVLP TW+ GR YG+TLEQLA WW
Sbjct: 358 GDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGRAYGLTLEQLARWW 417
Query: 420 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKV 479
SERPAKLAG SKGAIA G AD+VVW+PEAEF LD +P++ KH S+S YLG +LSGKV
Sbjct: 418 SERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKV 477
Query: 480 LATISRGNLVYKEGNHAPAACGSPILAT 507
+AT RGNLV+ EG HA ACGSPILA
Sbjct: 478 IATFVRGNLVFLEGKHAKQACGSPILAK 505
>gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid.
Length = 447
Score = 605 bits (1563), Expect = 0.0
Identities = 223/463 (48%), Positives = 292/463 (63%), Gaps = 19/463 (4%)
Query: 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
+ + R+VTP GV + +K G I +I + + V+D G V+MPGLID H
Sbjct: 2 LVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEE---VIDAGGLVVMPGLIDTH 58
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164
H+++PGRTEWEGF +GTKAAAAGGITT+IDMPLNS P T + E L+ K++AA+ +++VD
Sbjct: 59 VHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVD 118
Query: 165 VGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK 224
VGFWGGLVP N L L AGV+G K F+CPSG+++FP + ++E + LA+
Sbjct: 119 VGFWGGLVP---GNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVDDEQLEEAMKELAKTG 175
Query: 225 RPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
L VHAE + +E + R Y YL +RP E AI+ +L +AK+T
Sbjct: 176 SVLAVHAENPEITEALQEQAKAK-GKRDYRDYLASRPVFTEVEAIQRILLLAKET----- 229
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344
G LHIVHLS A + + L+ EA+ G +TVETCPHYL F+AE++PDG T FKCAPPI
Sbjct: 230 --GCRLHIVHLSSAEA-VPLIREARAEGVDVTVETCPHYLTFTAEDVPDGGTEFKCAPPI 286
Query: 345 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 404
RDAAN+E+LWEAL +G IDM+ SDHSP PELKLL +G+F KAWGGIS LQ LPV +
Sbjct: 287 RDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTE 346
Query: 405 GRKYGV-TLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
+LE +A E PAKL G KG IA+G AD VVW+PE EF +D + +
Sbjct: 347 AVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYY- 405
Query: 463 KHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
IS Y+GR L G+V ATI RG +VY++G G +L
Sbjct: 406 -KNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEPLGQLLL 447
>gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the
first step in the degradation of allantoin, a
ring-opening hydrolysis. The seed members of this model
are all in the vicinity of other genes involved in the
processes of xanthine/urate/allantoin catabolism.
Although not included in the seed, many eukaryotic
homologs of this family are included above the trusted
cutoff. Below the noise cutoff are related
hydantoinases.
Length = 443
Score = 457 bits (1178), Expect = e-158
Identities = 200/460 (43%), Positives = 274/460 (59%), Gaps = 21/460 (4%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ R++ P G V +K G I +I + P +++D G V+ PG++D H H
Sbjct: 4 IRGGRVILPNGEREADVGVKGGKIAAIGPDILGP----AAKIIDAGGLVVFPGVVDTHVH 59
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
+++PGRTEWEGF +GT+AAAAGGITT IDMPLNS P+T + +L+ K +AA+ ++ VDVG
Sbjct: 60 INEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVG 119
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
FWGGLVP YN L L AGV+G K+F+ PSG ++FP + + +G+ LAR +
Sbjct: 120 FWGGLVP---YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELARLGQL 176
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
LLVHAE + + E YL +RP E AIR L +AK T
Sbjct: 177 LLVHAENPAITSA-LGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT------- 228
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
G +H+VHLS ++ +++L+ EAK G +TVETCPHYL +AEE+PDG T KCAPPIRD
Sbjct: 229 GCRVHVVHLS-SAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRD 287
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG- 405
AN+E LWEAL++G ID + SDHSP P+LK G+F KAWGGI+ LQ L V +
Sbjct: 288 LANQEGLWEALLNGLIDCVVSDHSPCTPDLK--RAGDFFKAWGGIAGLQSTLDVMFDEAV 345
Query: 406 RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465
+K G+ LE +A + PAK G KG IA G AD V +P+ + L D + +H
Sbjct: 346 QKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPDDLYY-RHK 404
Query: 466 SISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
+S Y+GR + G+V AT RG +Y + A G +L
Sbjct: 405 -VSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAPKGQLLL 443
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 364 bits (936), Expect = e-122
Identities = 173/446 (38%), Positives = 244/446 (54%), Gaps = 27/446 (6%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
+VTP+GV + IK G I I E P +++D + PG+IDVH H ++PG
Sbjct: 12 VVTPEGVYRADIGIKNGKIAEIAPEISSP----AREIIDADGLYVFPGMIDVHVHFNEPG 67
Query: 112 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL 171
RT WEGF +G+ A AAGG TT DMPLNS P T++ E L K + A ++ VD WGGL
Sbjct: 68 RTHWEGFATGSAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGL 127
Query: 172 VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHA 231
VP N L L AGV+G K+FM SG ++F ++ + EG+ +A + L +HA
Sbjct: 128 VPG---NLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHA 184
Query: 232 E---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGA 288
E + + + + T D R YL++RP E A++ L A++T G
Sbjct: 185 ESDALTRHLTTQARQQGKT-DVRD---YLESRPVVAELEAVQRALLYAQET-------GC 233
Query: 289 HLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAA 348
LH VH+S ++ L+ EAK G ++VETCPHYL F+ E+ KCAPP+R +
Sbjct: 234 PLHFVHISSG-KAVALIAEAKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRS 292
Query: 349 NKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RK 407
KE+LW L+ G IDM+SSDHSP PELK + +F WGGIS Q L V + G +
Sbjct: 293 QKEELWRGLLAGEIDMISSDHSPCPPELK--EGDDFFLVWGGISGGQSTLLVMLTEGYIE 350
Query: 408 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467
G+ LE +A + PAK G KG + +G AD V+ + + + L + + +H
Sbjct: 351 RGIPLETIARLLATNPAKRFGLPQKGRLEVGADADFVLVDLDETYTLTKED-LFYRHK-Q 408
Query: 468 SAYLGRRLSGKVLATISRGNLVYKEG 493
S Y GR G+V+AT RG VY++G
Sbjct: 409 SPYEGRTFPGRVVATYLRGQCVYQDG 434
>gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases
[Nucleotide transport and metabolism].
Length = 430
Score = 341 bits (877), Expect = e-113
Identities = 153/445 (34%), Positives = 228/445 (51%), Gaps = 28/445 (6%)
Query: 50 KRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
R+V P + IK+G I +I + +++D +++PGL+D+H H +
Sbjct: 8 ARVVDPGEDEVADILIKDGKIAAIGKN---LEPTSGAEIIDAKGLLVLPGLVDLHVHFRE 64
Query: 110 PGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG E F +G++AAAAGG+TT++DMP P + E L+ K++ A+ + VD F+G
Sbjct: 65 PGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPID-TAEALEDKLERAKGKSVVDYAFYG 123
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
GL N LE G K FM S + ++E L A +LV
Sbjct: 124 GLTK---GNLGKLELTERGVEAGFKGFMDDST----GALDDDVLEEALEYAAELGALILV 176
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289
HAE + V E R+ L RPP E +AI L +A+ T GA
Sbjct: 177 HAEDDDLIAEGVMNEG----LRAPELGLAGRPPIAEASAIARDLELARAT-------GAR 225
Query: 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 349
+HI H+S S ++L+ AK G +T E PH+L E+I D T K PP+RD +
Sbjct: 226 VHICHISTKES-VELIRAAKAEGIRVTAEVTPHHLLLDEEDIEDLGTLAKVNPPLRDEED 284
Query: 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409
+E LWEAL DG ID+++SDH+P E K L F +A GI L+ LP+ + +K
Sbjct: 285 REALWEALKDGVIDVIASDHAPHTLEEKRLP---FEEAPSGIPGLETALPLLLTLVKKGR 341
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISA 469
++LE+L S PA++ G KGAI G ADLV+ +P+ E+ + ++ K + S
Sbjct: 342 LSLERLVELLSTNPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRA-EELYSKAKN-SP 399
Query: 470 YLGRRLSGKVLATISRGNLVYKEGN 494
+ G L G+V+ATI RG +VY++G
Sbjct: 400 FEGFELKGRVVATILRGKVVYEDGE 424
>gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional.
Length = 449
Score = 303 bits (777), Expect = 3e-98
Identities = 154/438 (35%), Positives = 232/438 (52%), Gaps = 37/438 (8%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
+ +K G I +I + +V+D V+ PG++D H H+ +PGR+ WEG+ +GT
Sbjct: 23 IAVKGGKIAAIGQD-----LGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGT 77
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
+AAA GGITT+I+MPLN P+T+ +++LK DAA+ ++ +D GGLV YN L
Sbjct: 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVS---YNLDRL 134
Query: 183 EALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRPLLVHAEM----- 233
L GV+G K F+ G NDF N +G L +P+LVH E
Sbjct: 135 HELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICD 194
Query: 234 EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIV 293
E G E K E + Y+ +RP E AIR +L +AK G LH+
Sbjct: 195 ELGEE--AKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA-------GCRLHVC 241
Query: 294 HLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKL 353
H+S + ++ + A+ G +T E+CPHY ++ + T KC+PPIRD N++ +
Sbjct: 242 HIS-SPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGM 300
Query: 354 WEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYG-RKYGVTL 412
WE L +G ID L SDHSP PE+K GN ++AWGGI+ LQ + V + +K G++L
Sbjct: 301 WEKLFNGEIDCLVSDHSPCPPEMK---AGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSL 357
Query: 413 EQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLG 472
+ A + G KG IA G AD V +P + + L N+ + +H +S Y+G
Sbjct: 358 PMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNED-LEYRH-KVSPYVG 415
Query: 473 RRLSGKVLATISRGNLVY 490
R + ++ TI RG+++Y
Sbjct: 416 RTIGARITKTILRGDVIY 433
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 231 bits (591), Expect = 2e-71
Identities = 118/393 (30%), Positives = 177/393 (45%), Gaps = 35/393 (8%)
Query: 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154
+I+PG+ID+H H +PG T E F SG++AAAAGG+TT++DMP N+ P T + E L K+
Sbjct: 3 LILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMP-NTKPPTTTAEALYEKL 61
Query: 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 214
A + VD G + G+ + L+ AG K FM S + +
Sbjct: 62 RLAAAKSVVDYGLYFGVTGSE--DLEELDKAPPAGY---KIFMGDSTGDLL------DDE 110
Query: 215 EGL-SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273
E L + A + HAE E + K R A L
Sbjct: 111 ETLERIFAEGSVLVTFHAEDEDRLRENRKELKGESAHPRI------RDAEAAAVATARAL 164
Query: 274 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333
+A+ GA LHI H+S + L K +TVE PH+L E+
Sbjct: 165 KLARRH-------GARLHICHVSTP----EELKLIKKAKPGVTVEVTPHHLFLDVEDYDR 213
Query: 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393
T K PP+R +++ L +AL DG ID+++SDH+P E K + A GI
Sbjct: 214 LGTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEK---RKGYPAAPSGIPG 270
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
++ LP+ + K ++L ++ S PA++ G +KG IA G ADL V + + E
Sbjct: 271 VETALPLMLTLVNKGILSLSRVVRLTSHNPARIFGIKNKGRIAEGYDADLTVVDLKEERT 330
Query: 454 LDNDHPVHMKHPSISAYLGRRLSGKVLATISRG 486
+ H K + + G ++G + TI RG
Sbjct: 331 I-RAEEFHSKAG-WTPFEGFEVTGFPVMTIVRG 361
>gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 225 bits (577), Expect = 1e-68
Identities = 144/476 (30%), Positives = 232/476 (48%), Gaps = 83/476 (17%)
Query: 45 YWLTSKRIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
+ + R++ PKG+ A V I +G I +I + ++ +V+D V+ PGL+D+
Sbjct: 3 ILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE----AEGAEVIDATGLVVAPGLVDL 58
Query: 104 HAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H HL +PG+ + E +G++AAAAGG TT++ MP N+ P + E ++ +D A++ V
Sbjct: 59 HVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEAGLV 117
Query: 164 DV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIK 214
DV G G + E AL AGV+ +D P+ +A ++
Sbjct: 118 DVLPVGAITKGLAGEELTE-------FGALKEAGVVAFS--------DDGIPVQDARLMR 162
Query: 215 EGLSVLARYKRPL-LVHAEMEKGSERHVKLEDDTLDTRSYSTY--------------LKT 259
L Y + L L+ A+ ED +L T L
Sbjct: 163 RAL----EYAKALDLLIAQHC---------EDPSL------TEGGVMNEGEVSARLGLPG 203
Query: 260 RPPSWEEAAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
P EE I R++L A+ T GA +HI H+S A S ++L+ AK G +T E
Sbjct: 204 IPAVAEEVMIARDVLL-AEAT-------GARVHICHVSTAGS-VELIRWAKALGIKVTAE 254
Query: 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378
PH+L + E++ D +K PP+R ++E L E L DG ID +++DH+P E K
Sbjct: 255 VTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKE 314
Query: 379 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAI 437
+ F A GI+ L+ L + ++ K G+ LEQL + PA++ G + G +A
Sbjct: 315 CE---FEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILG-LPAGPLAE 370
Query: 438 GNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKVLATISRGNLVYKE 492
G ADLV+++PEAE+ +D + + ++G +L GKV+ TI G +VY++
Sbjct: 371 GEPADLVIFDPEAEWTVDGE---DFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423
>gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues.
Length = 447
Score = 224 bits (572), Expect = 1e-67
Identities = 132/456 (28%), Positives = 209/456 (45%), Gaps = 35/456 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
IVT G + I++G I++I + P + +D ++PG ID H HL+ P
Sbjct: 7 TIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEV---IDATGKYVLPGGIDPHTHLELP 63
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F SGT+AAAAGG TT+ID + + ++ E ++ A+ + +D GF
Sbjct: 64 FMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSL-LEAVEKWRGKADGKSVIDYGFH 122
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
+ L L+ G+ K FM G+ M + + + L ++
Sbjct: 123 MIITDWTDSVIEELPELVKKGISSFKVFMAYKGLL---MVDDEELLDVLKRAKELGALVM 179
Query: 229 VHAEMEKGS---ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
VHAE G E KL Y +RPP E A + +A+
Sbjct: 180 VHAE--NGDVIAELQKKLLAQGKTGPEYHAL--SRPPEVEAEATARAIRLAELA------ 229
Query: 286 EGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCAP 342
GA L+IVH+S + + D + A+ G + ETCP YL + ++ C+P
Sbjct: 230 -GAPLYIVHVS-SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSP 287
Query: 343 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402
P+R ++E LW+ L G + + SDH P K + +F K G+ ++ +P+ W
Sbjct: 288 PLRPKEDQEALWDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLW 347
Query: 403 SYGRKYG-VTLEQLASWWSERPAKLAG---QVSKGAIAIGNHADLVVWEPEAEFELDNDH 458
S G G +TLE+ S PAK+ G + KG IA+G+ ADLV+W+P AE + D
Sbjct: 348 SEGVAKGRITLEKFVELTSTNPAKIFGLYPR--KGTIAVGSDADLVIWDPNAEKTISADT 405
Query: 459 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G ++ G + TISRG +V ++G
Sbjct: 406 H-HHN-VDYNIFEGMKVKGWPVVTISRGKVVVEDGE 439
>gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including
hydantoinase, dihydropyrimidinase, allantoinase, and
dihydroorotase, are involved in the metabolism of
pyrimidines and purines, sharing the property of
hydrolyzing the cyclic amide bond of each substrate to
the corresponding N-carbamyl amino acids. Allantoinases
catalyze the degradation of purines, while
dihydropyrimidinases and hydantoinases, a microbial
counterpart of dihydropyrimidinase, are involved in
pyrimidine degradation. Dihydroorotase participates in
the de novo synthesis of pyrimidines.
Length = 337
Score = 218 bits (556), Expect = 9e-67
Identities = 121/389 (31%), Positives = 191/389 (49%), Gaps = 54/389 (13%)
Query: 95 VIMPGLIDVHAHLDDPGRTEWEG-FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLK 153
+++PG ID+H HL DPG T ++ F SG++AAAAGG+TT+IDMP N+ P I ++LK
Sbjct: 2 LVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMP-NTGPPPIDLPAIELK 60
Query: 154 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 213
+ AE+ YVD F G+ P + + L+ L +AG+ LK FM F + + + +
Sbjct: 61 IKLAEESSYVDFSFHAGIGPGDVTDE--LKKLFDAGINSLKVFMNYYFGELFDVDDGT-L 117
Query: 214 KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELL 273
+A P++VHAE
Sbjct: 118 MRTFLEIASRGGPVMVHAER--------------------------------------AA 139
Query: 274 TVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPD 333
+A++ GA++HI H+S + L+L+ AK G +T E CPH+L +
Sbjct: 140 QLAEEA-------GANVHIAHVSSGEA-LELIKFAKNKGVKVTCEVCPHHLFLDESMLRL 191
Query: 334 GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISS 393
K PP+R ++E LWE + +G ID ++SDH+P E K + KA G
Sbjct: 192 NGAWGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPG 250
Query: 394 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
L+ LP+ + G K G++LE L SE PA++ G KG IA+G ADLV+ +P+ E++
Sbjct: 251 LETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTIAVGYDADLVIVDPKKEWK 310
Query: 454 LDNDHPVHMKHPSISAYLGRRLSGKVLAT 482
+ + + + G ++GK ++T
Sbjct: 311 VTAEE--IESKADWTPFEGMEVTGKPVST 337
>gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. In contrast to the homodimeric type of
dihydroorotase found in E. coli, this class tends to
appear in a large, multifunctional complex with
aspartate transcarbamoylase. Homologous domains appear
in multifunctional proteins of higher eukaryotes. In
some species, including Pseudomonas putida and P.
aeruginosa, this protein is inactive but is required as
a non-catalytic subunit of aspartate transcarbamoylase
(ATCase). In these species, a second, active
dihydroorotase is also present. The seed for this model
does not include any example of the dihydroorotase
domain of eukaryotic multidomain pyrimidine synthesis
proteins. All proteins described by This model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 411
Score = 215 bits (550), Expect = 7e-65
Identities = 136/408 (33%), Positives = 200/408 (49%), Gaps = 28/408 (6%)
Query: 88 VVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST 147
V+D +++PG ID+H HL DPG E SG+KAAA GG TT+ DMP N+ P +
Sbjct: 29 VIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMP-NTKPPIDTP 87
Query: 148 ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEA--LLNAGVLGLKSFMCPSGI-ND 204
ETL+ K+ +K VDV +GG V + EA L AG +G S + +
Sbjct: 88 ETLEWKLQRLKKVSLVDVHLYGG-VTQGNQGKELTEAYELKEAGAVGRMFTDDGSEVQDI 146
Query: 205 FPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 264
M A V P+ +HAE V E + L RPP
Sbjct: 147 LSMRRALEYAAIAGV------PIALHAEDPDLIYGGVMHE----GPSAAQLGLPARPPEA 196
Query: 265 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYL 324
EE A+ LL +AK G +HI H+S SL+L+++AK+ G IT E PH+L
Sbjct: 197 EEVAVARLLELAKHA-------GCPVHICHISTK-ESLELIVKAKSQGIKITAEVTPHHL 248
Query: 325 AFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384
S E++ D K PP+R+ ++ L E L DG ID++++DH+P E K F
Sbjct: 249 LLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EF 305
Query: 385 LKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 444
A GI L+ LP+ K ++L+ L S PA++ G KG + GN AD+
Sbjct: 306 AAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGNPADIT 365
Query: 445 VWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
V++ + E+ ++ + + K + + G L GK +ATI RG +VY++
Sbjct: 366 VFDLKKEWTINAET-FYSK-AKNTPFEGMSLKGKPIATILRGKVVYED 411
>gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth.
Length = 374
Score = 213 bits (545), Expect = 1e-64
Identities = 131/400 (32%), Positives = 199/400 (49%), Gaps = 28/400 (7%)
Query: 85 TGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPST 144
+V+D ++ PGL+D+H HL +PG E SG KAAAAGG TT++ MP N++P
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMP-NTNPVI 59
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SALEALLNAGVLGLKSFMCPSGIN 203
+ ++L + A+ V V G L + + LL AG +G +
Sbjct: 60 DNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGF-------SDD 112
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 263
P+ +A ++ L A P++VH E + + + + +R L PP
Sbjct: 113 GKPIQDAELLRRALEYAAMLDLPIIVHPE-DPSLAGGGVMNEGKVASRLG---LPGIPPE 168
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323
E + L +A+ T GA +H HLS A S L+L+ +AK G +T E PH+
Sbjct: 169 AETIMVARDLELAEAT-------GARVHFQHLSTARS-LELIRKAKAKGLPVTAEVTPHH 220
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
L E + DT K PP+R ++E L EAL DG ID ++SDH+P E K L
Sbjct: 221 LLLDDEALESYDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLP--- 277
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHAD 442
F +A GI L+ LP+ W+ K G+ TL L S PAK+ G + G + +G AD
Sbjct: 278 FAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILG-LPPGRLEVGAPAD 336
Query: 443 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482
LV+++P+AE+ +D + K + + G++L G+VLAT
Sbjct: 337 LVLFDPDAEWIVDEET-FRSK-SKNTPFDGQKLKGRVLAT 374
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 195 bits (498), Expect = 7e-57
Identities = 136/474 (28%), Positives = 223/474 (47%), Gaps = 72/474 (15%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG 111
+V P G + I++G I +I + G+V+D ++PG+ID H +PG
Sbjct: 14 VVNPDGEGRADIGIRDGRIAAIGD----LSGASAGEVIDCRGLHVLPGVIDSQVHFREPG 69
Query: 112 RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGL 171
E +G++AA GG+T + +MP N++P T + E L K+ A R++ D F+ G
Sbjct: 70 LEHKEDLETGSRAAVLGGVTAVFEMP-NTNPLTTTAEALADKLARARHRMHCDFAFYVGG 128
Query: 172 VPENAYNASALEALLNAGVLGLKSFMCPSG----INDFPMTNASHIKEGL-SVLARYKRP 226
+NA + LE L G G+K FM S + D EGL +L +R
Sbjct: 129 TRDNADELAELERL--PGCAGIKVFMGSSTGDLLVED---------DEGLRRILRNGRRR 177
Query: 227 LLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSW--EEAAI---RELLTVAKDT 279
H+E E + +++E D S++ P W EEAA+ R L+ +A++T
Sbjct: 178 AAFHSEDEYRLRERKGLRVEGD------PSSH-----PVWRDEEAALLATRRLVRLARET 226
Query: 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG-DTRF 338
G +H++H+S A +D L + K D TVE PH+L +A E + T
Sbjct: 227 -------GRRIHVLHVSTA-EEIDFLADHK---DVATVEVTPHHLTLAAPECYERLGTLA 275
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW----GGISSL 394
+ PPIRDA +++ LW + G +D+L SDH+P E K K + G++ +
Sbjct: 276 QMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEK-------AKPYPASPSGMTGV 328
Query: 395 QFVLPVTWSY---GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
Q ++P+ + GR ++LE+ S PA++ G KG IA+G AD + + +
Sbjct: 329 QTLVPIMLDHVNAGR---LSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRR 385
Query: 452 FELDNDHPVHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
+ N+ + + Y G+ ++G + TI RG V +G G P+
Sbjct: 386 ETITNE---WIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVGPPTGEPV 436
>gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated.
Length = 459
Score = 192 bits (490), Expect = 1e-55
Identities = 128/474 (27%), Positives = 208/474 (43%), Gaps = 75/474 (15%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+VT V I++G I +I + +V+D +MPG ID H H++ P
Sbjct: 9 TVVTADDTYKADVLIEDGKIAAIGANLG-------DEVIDATGKYVMPGGIDPHTHMEMP 61
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDA----AEKRIYVD 164
G + F +GT+AAA GG TT+ID L ++L+ ++A A + +D
Sbjct: 62 FGGTVSSDDFETGTRAAACGGTTTIIDFALQP-----KGQSLREALEAWHGKAAGKAVID 116
Query: 165 VGFWGGL--VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
GF + E + + L+ G+ K FM M + + L A
Sbjct: 117 YGFHMIITDWNEVVLDE--MPELVEEGITSFKLFM---AYKGALMLDDDELLRALQRAAE 171
Query: 223 YKRPLLVHAE------------MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 270
+VHAE + +G T L +RPP E A
Sbjct: 172 LGALPMVHAENGDAIAYLQAKLLAEG------------KTGPEYHAL-SRPPEVEGEATN 218
Query: 271 ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEE 330
+ +A+ GA L+IVH+S +L+ + A+ G + ETCP YL E
Sbjct: 219 RAIMLAELA-------GAPLYIVHVS-CKEALEAIRRARARGQRVFGETCPQYLLLDESE 270
Query: 331 I--PDGDT--RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFL 385
PD ++ +PP+RD +++ LW L DG + ++++DH P + K L G+F
Sbjct: 271 YDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFT 330
Query: 386 KAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG---QVSKGAIAIGNHA 441
K G ++ +P+ +S G G +TL + S PAK+ G + KG IA+G A
Sbjct: 331 KIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPR--KGTIAVGADA 388
Query: 442 DLVVWEPEAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISRGNLVYKEG 493
D+V+W+P A + H ++ + Y G ++G + T+SRG +V ++G
Sbjct: 389 DIVIWDPNATKTISAS----TLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDG 438
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 191 bits (487), Expect = 2e-55
Identities = 132/401 (32%), Positives = 197/401 (49%), Gaps = 30/401 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
R+ + V I G I ++ + D S + +V+D +++PG IDVH H +P
Sbjct: 10 RVYYNNSLQPRDVRIDGGKITAVGKDLD---GSSSEEVIDARGMLLLPGGIDVHVHFREP 66
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170
G T E + +G+++AAAGG+TT++D P N+DP T+ E+ K + A ++ VD G GG
Sbjct: 67 GYTHKETWYTGSRSAAAGGVTTVVDQP-NTDPPTVDGESFDEKAELAARKSIVDFGINGG 125
Query: 171 LVPENAYNASALEALLNAGVLGL-KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
+ N LE+L GV L + FM S + + +E L+ AR V
Sbjct: 126 VTG----NWDPLESLWERGVFALGEIFMADS-TGGMGI-DEELFEEALAEAARLGVLATV 179
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289
HAE E + KL D ++S Y RP + E AA+ L VA +T GA
Sbjct: 180 HAEDEDLFDELAKLLKGDADADAWSAY---RPAAAEAAAVERALEVASET-------GAR 229
Query: 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 349
+HI H+S +D IT E PH+L S + T K PP+R
Sbjct: 230 IHIAHIS-TPEGVDAARREG-----ITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKR 283
Query: 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409
+E LWE L DG ID+++SDH+P E K D A G+ ++ +LP+ + RK
Sbjct: 284 REALWERLNDGTIDVVASDHAPHTREEKDAD---IWDAPSGVPGVETMLPLLLAAVRKNR 340
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 450
+ LE++ + PA++ G KG IA G ADLV+ +P+A
Sbjct: 341 LPLERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDA 381
>gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents
the D-hydantoinase (dihydropyrimidinase) which primarily
converts 5,6-dihydrouracil to 3-ureidopropanoate but
also acts on dihydrothymine and hydantoin. The enzyme is
a metalloenzyme.
Length = 454
Score = 185 bits (471), Expect = 5e-53
Identities = 127/463 (27%), Positives = 210/463 (45%), Gaps = 37/463 (7%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
+ +V V V I+ G I+++ S P + V+D ++PG IDVH
Sbjct: 2 LIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVE---VIDATGKYVLPGGIDVHT 58
Query: 106 HLDDP--GRTEWEGFPSGTKAAAAGGITTLIDM--PLNSDPSTISTETLKLKVDAAEKRI 161
HL+ P G + F +GTKAAAAGG TT+ID P + T + ET K AE +
Sbjct: 59 HLEMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEK---AEGKS 115
Query: 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 221
+D GF + N + + G+ SF + M + + E L
Sbjct: 116 VIDYGFHMMITDWNDHVLEEHIPEVVEE--GITSFKVFMAYKNLLMVDDEELFEILKRAK 173
Query: 222 RYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277
L VHAE + + R + + + S RPP E A+ + +A
Sbjct: 174 ELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALS-----RPPESEAEAVARAIALAA 228
Query: 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE--EIPDGD 335
D P L++VH+S A + +D + EA+ G + ETCP YL + P +
Sbjct: 229 --LADAP-----LYVVHVSTADA-VDEIAEAREKGQPVYGETCPQYLVLDDTAYDKPGFE 280
Query: 336 -TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISS 393
++ C+PP+R+ +++ LW AL G + + SDH P + K + + +F K G
Sbjct: 281 GAKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPG 340
Query: 394 LQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAE 451
++ + + + G G +TLE+ S PAK+ KG IA+G+ AD+V+W+P
Sbjct: 341 VEERMTLLFDEGVAKGRITLEKFVELTSTNPAKIFNMYPQKGTIAVGSDADIVIWDPNRT 400
Query: 452 FELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ + H + + + G ++ G V++ +SRG +V ++G
Sbjct: 401 TVISAET--HHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQ 441
>gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 174 bits (442), Expect = 5e-49
Identities = 128/470 (27%), Positives = 206/470 (43%), Gaps = 62/470 (13%)
Query: 51 RIVTPKG-VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
RI+ P G ++ G V +++G I++I E + V+D ++PG+ID H +
Sbjct: 11 RILLPSGELLLGDVLVEDGKIVAIAPEIS---ATAVDTVIDAEGLTLLPGVIDPQVHFRE 67
Query: 110 PGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG E + ++A A GG+T+ ++MP N+ P T + L K+ A ++ V+ GF+
Sbjct: 68 PGLEHKEDLFTASRACAKGGVTSFLEMP-NTKPLTTTQAALDDKLARAAEKCVVNYGFFI 126
Query: 170 GLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASH-----IKEGL--SVLA 221
G P+N L LL A G+K FM +SH +E + A
Sbjct: 127 GATPDN------LPELLTANPTCGIKIFM-----------GSSHGPLLVDEEAALERIFA 169
Query: 222 RYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAI---RELLTVAKD 278
R + VHAE + D +S EEAA+ R L ++K
Sbjct: 170 EGTRLIAVHAEDQARIRARRAEFAGISDPADHSQIQD------EEAALLATRLALKLSKK 223
Query: 279 TRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRF 338
+ LHI+HLS A +LL + K + +T E P +L + + T
Sbjct: 224 YQR-------RLHILHLSTAIE-AELLRQDKPS--WVTAEVTPQHLLLNTDAYERIGTLA 273
Query: 339 KCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
+ PP+R + E LW+AL DG ID +++DH+P E K + + G+ ++ L
Sbjct: 274 QMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKAQP---YPNSPSGMPGVETSL 330
Query: 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 458
P+ + + T+ Q+ W S A+ G +KG IA G ADLV+ +L+
Sbjct: 331 PLMLTAAMRGKCTVAQVVRWMSTAVARAYGIPNKGRIAPGYDADLVL------VDLNTYR 384
Query: 459 PVH----MKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
PV + S + G L+G + TI G +V+ G G +
Sbjct: 385 PVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVNTEVRGQAL 434
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 165 bits (419), Expect = 1e-45
Identities = 127/486 (26%), Positives = 196/486 (40%), Gaps = 69/486 (14%)
Query: 42 YNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
+ + + RIV + G V I+ G I I S V+D ++PG+I
Sbjct: 1 MKRILIKNARIVNEGKIFEGDVLIENGRIAKIASSIS---AKSADTVIDAAGRYLLPGMI 57
Query: 102 DVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRI 161
D H +PG T S ++AA AGGIT+ ++MP N++P T + E L+ K A +R
Sbjct: 58 DDQVHFREPGLTHKGDIASESRAAVAGGITSFMEMP-NTNPPTTTLEALEAKYQIAAQRS 116
Query: 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN---DFPMTNASHIKEGLS 218
+ F+ G + N ++ L V G+K FM S N D P
Sbjct: 117 LANYSFYFG-ATND--NLDEIKRLDPKRVCGVKVFMGASTGNMLVDNP-----------E 162
Query: 219 VLARYKR----PLLVHAEME----KGSERHVKLEDDTLDT------RSYSTYLKTRPPSW 264
L R R + H E ++ + D + RS
Sbjct: 163 TLERIFRDAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRS------------ 210
Query: 265 EEAAIR------ELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
EA + L AK G LH++H+S A L L IT E
Sbjct: 211 AEACYKSSSLAVSL---AKKH-------GTRLHVLHISTAKE-LSLFENGPLAEKRITAE 259
Query: 319 TCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKL 378
C H+L F + KC P I+ A+++E L +AL D ID++++DH+P E K
Sbjct: 260 VCVHHLWFDDSDYARLGNLIKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEK- 318
Query: 379 LDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIG 438
+G + +A G+ +Q LP + ++LE++ S PA L +G I G
Sbjct: 319 --QGPYFQAPSGLPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDIKERGFIREG 376
Query: 439 NHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 498
ADLV+ + + + + + + K S + GR +V T G LVY G +
Sbjct: 377 YWADLVLVDLNSPWTVTKE-NILYK-CGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVES 434
Query: 499 ACGSPI 504
G +
Sbjct: 435 CRGQRL 440
>gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional.
Length = 477
Score = 164 bits (418), Expect = 3e-45
Identities = 130/487 (26%), Positives = 211/487 (43%), Gaps = 62/487 (12%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+VT + I+ G I ++ + +D +++PG +D H H+D P
Sbjct: 12 TVVTATDTFQADIGIRGGRIAALGE-----GLGPGAREIDATGRLVLPGGVDSHCHIDQP 66
Query: 111 ---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167
G + F +GT +AA GG TT+I ++ E ++ A + +D F
Sbjct: 67 SGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLR-EAVEDYHRRAAGKAVIDYAF 125
Query: 168 WGGLV---PENAYNASALEALLNAGVLGLKSFMCPSG--INDFPMTNASHIKEGLSVLAR 222
L+ P L AL+ G K FM ++D + + L+V R
Sbjct: 126 --HLIVADPTEEVLTEELPALIAQGYTSFKVFMTYDDLKLDDRQIL------DVLAVARR 177
Query: 223 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYST---YLKTRPPSWEEAAIRELLTVAKDT 279
+ ++VHAE + + L + + +RP E A + +A+
Sbjct: 178 HGAMVMVHAE----NHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAE-- 231
Query: 280 RTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---- 335
D P + IVH+S + + + A+ G I ETCP YL +AE++ D
Sbjct: 232 LVDVP-----ILIVHVSGREA-AEQIRRARGRGLKIFAETCPQYLFLTAEDL-DRPGMEG 284
Query: 336 TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP---TVPELKLL--DEGNFLKAWGG 390
++ C+PP RD AN+E +W L DG ++ SSDH+P + KL +F G
Sbjct: 285 AKYICSPPPRDKANQEAIWNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANG 344
Query: 391 ISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEP 448
I ++ LP+ +S G G ++L + + S PAKL G KGAIAIG AD+ +W+P
Sbjct: 345 IPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDP 404
Query: 449 EAEFELDNDHPVHMKHPSI--SAYLGRRLSGKVLATISRGNLVYKEGN-HAPA------A 499
+ E + N H + + Y G R++G + +SRG +V ++G A A
Sbjct: 405 DREVTITNA----DLHHAADYTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLA 460
Query: 500 CGSPILA 506
P A
Sbjct: 461 RSLPDRA 467
>gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional.
Length = 398
Score = 153 bits (387), Expect = 1e-41
Identities = 119/436 (27%), Positives = 191/436 (43%), Gaps = 60/436 (13%)
Query: 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEG 117
++ G + I+ G I I R+ K +V+ +I+PGLIDVH HL D + E
Sbjct: 12 IVEGGIGIENGRISKI-----SLRDLKGKEVIKVKGGIILPGLIDVHVHLRDFEESYKET 66
Query: 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAY 177
SGTKAA GGIT + DMP N+ P + +T + ++ AEK+ Y D L+ N
Sbjct: 67 IESGTKAALHGGITLVFDMP-NTKPPIMDEKTYEKRMRIAEKKSYADY-ALNFLIAGNCE 124
Query: 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237
A ++A K FM S T + A + VHAE
Sbjct: 125 KAEEIKADFY------KIFMGAS-------TGGIFSENFEVDYACAPGIVSVHAE----- 166
Query: 238 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSD 297
D + + RPP E AI L K + LHI H+S
Sbjct: 167 -----------DPELIREFPE-RPPEAEVVAIERALEAGKKLKKP-------LHICHIST 207
Query: 298 ASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEAL 357
L L++++ N ++ E PH+L + ++ K PP+R +++ LWE
Sbjct: 208 K-DGLKLILKS--NLPWVSFEVTPHHLFLTRKDYERNP-LLKVYPPLRSEEDRKALWENF 263
Query: 358 MDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 417
I +++SDH+P E K + G GI L+ +P+ K ++L +
Sbjct: 264 --SKIPIIASDHAPHTLEDK--EAGA-----AGIPGLETEVPLLLDAANKGMISLFDIVE 314
Query: 418 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477
+ PA++ G + G I GN+A+ V++ + E+ + + ++ K + Y G +L G
Sbjct: 315 KMHDNPARIFGIKNYG-IEEGNYANFAVFDMKKEWTIKAEE-LYTK-AGWTPYEGFKLKG 371
Query: 478 KVLATISRGNLVYKEG 493
KV+ TI RG +V ++
Sbjct: 372 KVIMTILRGEVVMEDD 387
>gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional.
Length = 409
Score = 139 bits (353), Expect = 1e-36
Identities = 106/406 (26%), Positives = 175/406 (43%), Gaps = 56/406 (13%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120
+E+++G I SI ++D K + I+P D+H H PG TE E F +
Sbjct: 16 LEIEVEDGKIKSI--KKDAGNIGKK-----ELKGAILPAATDIHVHFRTPGETEKEDFST 68
Query: 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 180
GT +A GG T ++DMP N++ K+ + YVD + NA
Sbjct: 69 GTLSAIFGGTTFIMDMP-NNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA---- 123
Query: 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG-LSVLARYKRPLLVHAEMEKGSER 239
+L+ +GLK +M + TN + I+ G + + P+ HAE+ + +
Sbjct: 124 ---LILDERSIGLKVYMGGT-----TNTNGTDIEGGEIKKINEANIPVFFHAELSECLRK 175
Query: 240 HVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDAS 299
H ++++ + RP E A++ + + T+ I H+S
Sbjct: 176 H------QFESKNLRDHDLARPIECEIKAVKYVKNLDLKTK----------IIAHVSSID 219
Query: 300 SSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMD 359
L E PH+L +++P G + K PP+RD +E+L E +
Sbjct: 220 VIGRFLREVT-----------PHHL-LLNDDMPLG-SYGKVNPPLRDRWTQERLLEEYIS 266
Query: 360 GHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWW 419
G D+LSSDH+P E D+ F A GI ++ +P+ + +K + L+ L
Sbjct: 267 GRFDILSSDHAPHTEE----DKQEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTA 322
Query: 420 SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHP 465
ERPA L G + KG I G AD + ++ ++ ND +H K P
Sbjct: 323 IERPASLFG-IKKGKIEEGYDADFMAFDFTNIKKI-NDKRLHSKCP 366
>gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional.
Length = 392
Score = 122 bits (309), Expect = 8e-31
Identities = 110/442 (24%), Positives = 175/442 (39%), Gaps = 85/442 (19%)
Query: 67 EGNIISIVSEEDWPRNSKTGQ-----VVDYGE-AVIMPGLIDVHAHLDDPGRTEWEGFPS 120
I I D R K + +D + +I+PG ID+H HL + E S
Sbjct: 12 GKEIKEICINFD--RRIKEIKSRCKPDLDLPQGTLILPGAIDLHVHLRGLKLSYKEDVAS 69
Query: 121 GTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS 180
GT AA GG+T + DMP N+ P + E + K+ E VD + G V ++
Sbjct: 70 GTSEAAYGGVTLVADMP-NTIPPLNTPEAITEKLAELEYYSRVDYFVYSG-VTKD----- 122
Query: 181 ALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERH 240
E + + G K F P + +E VL + ++ ++H E+
Sbjct: 123 -PEKVDKLPIAGYKIF--PEDLER---------EETFRVLLKSRKLKILHPEV------P 164
Query: 241 VKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS 300
+ L+ + K R W E A + + ++HI H S+ +
Sbjct: 165 LALKSNR----------KLRRNCWYEIAALYYVK-----------DYQNVHITHASNPRT 203
Query: 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360
+ AK G TV+ PH+L + E D K PPIRD + L +AL +
Sbjct: 204 ----VRLAKELG--FTVDITPHHLLVNGE----KDCLTKVNPPIRDINERLWLLQALSE- 252
Query: 361 HIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWS 420
+D ++SDH+P KL + GI++L F P ++ K +++++ S
Sbjct: 253 -VDAIASDHAPHSSFEKLQ---PYEVCPPGIAALSFTPPFIYTLVSKGILSIDRAVELIS 308
Query: 421 ERPAKLAGQVSKGAIAIGNHADLVV-----WEPEAEFELDNDHPVHMKHPSISAYLGRRL 475
PA++ G + G I G A+ V W ++ + P+ G L
Sbjct: 309 TNPARILG-IPYGEIKEGYRANFTVIQFEDWRYSTKYSKVIETPL----------DGFEL 357
Query: 476 SGKVLATISRGNLVYKEGNHAP 497
V ATI +G L Y EG P
Sbjct: 358 KASVYATIVQGKLAYLEGEVFP 379
>gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional.
Length = 425
Score = 112 bits (281), Expect = 8e-27
Identities = 110/442 (24%), Positives = 195/442 (44%), Gaps = 60/442 (13%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 124
+ G I +I P + +D ++ PGL+D+ A L +PG S A
Sbjct: 25 VAAGKIAAIGQA---PAGFNADKTIDASGLIVCPGLVDLSARLREPGYEYKATLESEMAA 81
Query: 125 AAAGGITTLI-----DMPLNSDPSTISTETLKLKVDAAEK-RIY----VDVGFWGGLVPE 174
A AGG+T+L+ D L+ +P + E LK + + +Y + VG G ++ E
Sbjct: 82 AVAGGVTSLVCPPDTDPVLD-EPGLV--EMLKFRARNLNQAHVYPLGALTVGLKGEVLTE 138
Query: 175 NAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYK-----RPLLV 229
L AG +G + P+ + + L + + RPL
Sbjct: 139 MV-------ELTEAGCVGFSQ-------ANVPVVDTQVLLRALQYASTFGFTVWLRPLDA 184
Query: 230 HAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAH 289
+ +G + +R L P + E A+ + + + T GA
Sbjct: 185 F--LGRGGVAA----SGAVASR---LGLSGVPVAAETIALHTIFELMRVT-------GAR 228
Query: 290 LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAAN 349
+H+ LS A+ + L+ AK G +T + +++ +I D++F+ PP+R +
Sbjct: 229 VHLARLSSAAG-VALVRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRD 287
Query: 350 KEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG 409
+E + AL DG ID + SDH+P + KLL F +A G + L+ +LP+T + +
Sbjct: 288 REAIRAALADGTIDAICSDHTPVDDDEKLLP---FAEATPGATGLELLLPLTLKWADEAK 344
Query: 410 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-S 468
V L + + + PA++ G + G +A G ADL V++P+A + ++ P +K +
Sbjct: 345 VPLARALARITSAPARVLG-LPAGRLAEGAPADLCVFDPDAHWRVE---PRALKSQGKNT 400
Query: 469 AYLGRRLSGKVLATISRGNLVY 490
+LG L G+V AT+ G + +
Sbjct: 401 PFLGYELPGRVRATLVAGQVAF 422
>gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase.
Length = 486
Score = 111 bits (279), Expect = 2e-26
Identities = 114/445 (25%), Positives = 192/445 (43%), Gaps = 39/445 (8%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP--GRTEWEGFPS 120
V +++G I+++ P + + V+D +MPG ID H HL P G + F S
Sbjct: 25 VYVEDGIIVAVAPNLKVPDDVR---VIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFS 81
Query: 121 GTKAAAAGGITTLIDMPLNSDPSTIST-ETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA 179
G AA AGG T ID + + + ++ E + K AEK +D GF + + +
Sbjct: 82 GQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKK---AEKSC-MDYGFHMAITKWDDTVS 137
Query: 180 SALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAE----ME 234
+E L+ G+ K FM G M + EG +VHAE +
Sbjct: 138 RDMETLVKEKGINSFKFFMAYKGS---LMVTDELLLEGFKRCKSLGALAMVHAENGDAVF 194
Query: 235 KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH 294
+G +R ++L + + S RPP E A + +AK T L++VH
Sbjct: 195 EGQKRMIELGITGPEGHALS-----RPPLLEGEATARAIRLAKFVNTP-------LYVVH 242
Query: 295 LSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKC----APPIRDAANK 350
+ + +++ + A+ +G + E L ++ D D +PPIR A +
Sbjct: 243 VM-SIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHG 301
Query: 351 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYG- 409
+ L AL G + ++ +DH P K + +F K G++ ++ + + W + G
Sbjct: 302 KALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQ 361
Query: 410 VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 468
++ S AK+ KGAI G+ AD+++ P + F + H +
Sbjct: 362 ISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAK--THHSRIDTN 419
Query: 469 AYLGRRLSGKVLATISRGNLVYKEG 493
Y GRR GKV TIS+G +V++ G
Sbjct: 420 VYEGRRGKGKVEVTISQGRVVWENG 444
>gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 101 bits (253), Expect = 3e-23
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 301 SLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG 360
SL+LL + K+ G+ + E H+L + +T K PP+R ++ L EAL +G
Sbjct: 208 SLELLDKFKSEGEKLLKEVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEG 267
Query: 361 HIDMLSSDHSPTVPELKLL--DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLAS 417
ID L+S HS K L DE F GI S+ + ++Y K G +T +L+
Sbjct: 268 KIDFLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSR 322
Query: 418 WWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSG 477
+ S PA+ G + G I +G ADLV+++P +D+ + S Y G L G
Sbjct: 323 FTSYNPAQFLGL-NSGEIEVGKEADLVLFDPNESTIIDD---------NFSLYSGDELYG 372
Query: 478 KVLATISRGNLVYK 491
K+ A I +G L +
Sbjct: 373 KIEAVIIKGKLYLE 386
>gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional.
Length = 418
Score = 100 bits (252), Expect = 5e-23
Identities = 109/423 (25%), Positives = 187/423 (44%), Gaps = 33/423 (7%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
V I++G I +I E Q++D ++ PGL+D+++H +PG E E S
Sbjct: 24 VLIEDGKIQAI--EPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEPGFEERETLASLA 81
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNA-SA 181
AAAAGG T + +P ++ P + TL A++ V + FWG L +
Sbjct: 82 AAAAAGGFTRVAILP-DTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTE 140
Query: 182 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 241
L L AGV+G + P+ N + ++ L L +P+ + + V
Sbjct: 141 LAELAAAGVVGFT--------DGQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNGV 192
Query: 242 KLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS 301
E + L P S E A+ LL + T +H++ +S A S
Sbjct: 193 MREGLL----ALRLGLPGDPASAETTALAALLELVAAIGTP-------VHLMRISTARS- 240
Query: 302 LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361
++L+ +AK G IT T +L E + D + PP+ + ++++ L E + G
Sbjct: 241 VELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLRLDPPLGNPSDRQALIEGVRTGV 300
Query: 362 IDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW-SYGRKYGVTLEQLASWWS 420
ID ++ DH+P E K + F +A G L+ LP+ W + ++ QL S
Sbjct: 301 IDAIAIDHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALS 357
Query: 421 ERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI-SAYLGRRLSGKV 479
PA+ GQ ++A G A+L++++P+ + + + S + +LG+ L G+V
Sbjct: 358 TNPARCLGQEPP-SLAPGQPAELILFDPQKTWTVSAQ---TLHSLSRNTPWLGQTLKGRV 413
Query: 480 LAT 482
L T
Sbjct: 414 LQT 416
>gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional
enzyme of carbamoylphosphate synthetase-aspartate
transcarbamoylase-dihydroorotase, which catalyzes the
first three steps of de novo pyrimidine nucleotide
biosynthesis. Dihydroorotase (DHOase) catalyzes the
third step, the reversible interconversion of carbamoyl
aspartate to dihydroorotate.
Length = 344
Score = 97.1 bits (242), Expect = 4e-22
Identities = 83/283 (29%), Positives = 130/283 (45%), Gaps = 64/283 (22%)
Query: 95 VIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKV 154
+ +PGLIDVH HL +PG T E F SGTKAA AGG T + MP N++PS + +LKL
Sbjct: 3 IRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMP-NTNPSIVDVASLKLVQ 61
Query: 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 214
A+ + D F G NA L + +GLK ++ N+ T ++ I
Sbjct: 62 SLAQAKARCDYAFSIGATSTNAATVGE----LASEAVGLKFYL-----NE---TFSTLIL 109
Query: 215 EGLSVLARY------KRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 268
+ ++ A + +P++ HA+ S L AA
Sbjct: 110 DKITAWASHFNAWPSTKPIVTHAK---------------------SQTL---------AA 139
Query: 269 IRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSA 328
+ LL + R +HI H+S ++L+ AK G +T E PH+L S
Sbjct: 140 V--LLLASLHNR--------SIHICHVSSKEE-INLIRLAKARGLKVTCEVSPHHLFLSQ 188
Query: 329 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP 371
+++P G +++ P + ++E LWE L +ID ++DH+P
Sbjct: 189 DDLPRG--QYEVRPFLPTREDQEALWENL--DYIDCFATDHAP 227
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 71.2 bits (175), Expect = 3e-13
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 9/206 (4%)
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
H +S A S + L AK G +T ++L+ + +I + T FK +PP+R
Sbjct: 231 RGRYHAAQISCAES-AEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRT 289
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
++ + EA+ G ID++ S H P + K L F +A G L+ +L
Sbjct: 290 EDDRVAMVEAVASGTIDIIVSSHDPQDVDTKRLP---FSEAAAGAIGLETLLAAALRLYH 346
Query: 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 466
V L +L S RPA++ G + G + G AD++V + + + +D P +K S
Sbjct: 347 NGEVPLLRLIEALSTRPAEIFG-LPAGTLKPGAPADIIVIDLDEPWVVD---PEDLKSRS 402
Query: 467 I-SAYLGRRLSGKVLATISRGNLVYK 491
+ + R G+V+ TI G VY+
Sbjct: 403 KNTPFEEARFQGRVVRTIVAGKTVYE 428
Score = 59.3 bits (144), Expect = 2e-09
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 47 LTSKRIVTPKGVIS--GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
L + RI+ P + G V I++G I++ + ++VD + PGL+D
Sbjct: 7 LANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDAR 66
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDP 142
+ +PG E S ++AAAAGG+T++I MP ++DP
Sbjct: 67 VFVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDP 103
>gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 66
Score = 61.5 bits (150), Expect = 3e-12
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKA 124
I++G I +I ++ +V+D ++PGLID+H HL E +G A
Sbjct: 3 IEDGKIAAIGGDDLPDA---EAEVIDAEGKYVLPGLIDMHVHLG--EEPGRETLETGAAA 57
Query: 125 AAAGGITTL 133
A AGG+TT+
Sbjct: 58 ALAGGVTTV 66
>gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family. This family of
enzymes are a a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 307
Score = 62.7 bits (152), Expect = 9e-11
Identities = 69/362 (19%), Positives = 114/362 (31%), Gaps = 64/362 (17%)
Query: 95 VIMPGLIDVHAHLDDP---GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 151
+++PGLID H HL+ P G +E +G KA G TT++D P +++ S + +
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 152 LKVDAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFP 206
+ AA K + + G A E L +
Sbjct: 61 EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDGAGEEAKAGA--DLIKVIE--DGGKTA 116
Query: 207 MTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 266
L LA + P + H ++ E + ++ S E
Sbjct: 117 KAIDGV----LPALAPHDPPTVSHEGLKNEVE-LAEETEEAEKLGLLVHIH-AAEASGEV 170
Query: 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326
AI + + H +HL D + L++ +G +
Sbjct: 171 NAILGGVDLLA-------------HCLHLDDEAI---ELLKEAGSGIAHCP--------L 206
Query: 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 386
S E I RF + I L S + +L D+G +
Sbjct: 207 SNESILHRGGRF--------------SLMSGDAQGIGELGSGGARLA---RLADKGGVVG 249
Query: 387 AWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVV 445
+ L Y G++ + + PAK G G+I +G ADLVV
Sbjct: 250 LGTDGAGLNGKD----FYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVV 305
Query: 446 WE 447
+
Sbjct: 306 VD 307
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 60.4 bits (146), Expect = 4e-10
Identities = 56/309 (18%), Positives = 87/309 (28%), Gaps = 89/309 (28%)
Query: 100 LIDVHAHLDDPGRTEWEGFP------------------SGTKAAAAGGITTLIDMPLNSD 141
ID H HLD +A AGG+TT++DM ++
Sbjct: 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMG-STP 59
Query: 142 PSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNAS--------ALEALLNAGVLGL 193
P T + ++ +AA + V G+ A L L G +GL
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 194 KSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSY 253
K + + ++ L + P+++HA
Sbjct: 120 KLAGPYT----ATGLSDESLRRVLEEARKLGLPVVIHAG--------------------- 154
Query: 254 STYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS-SLDLLMEAKTNG 312
A+ +L+ G + I H+S L+LL EA
Sbjct: 155 -------ELPDPTRALEDLV--------ALLRLGGRVVIGHVSHLDPELLELLKEAG--- 196
Query: 313 DSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPT 372
+++E CP RD E L L G L +D P
Sbjct: 197 --VSLEVCPLSNYLLG----------------RDGEGAEALRRLLELGIRVTLGTDGPPH 238
Query: 373 VPELKLLDE 381
LL
Sbjct: 239 PLGTDLLAL 247
>gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA,
catalyzes the hydrolysis of the N-acetyl group of
N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to
glucosamine 6-phosphate and acetate. This is the first
committed step in the biosynthetic pathway to
amino-sugar-nucleotides, which is needed for cell wall
peptidoglycan and teichoic acid biosynthesis.
Deacetylation of N-acetylglucosamine is also important
in lipopolysaccharide synthesis and cell wall recycling.
Length = 374
Score = 58.7 bits (143), Expect = 3e-09
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
+ + RI+TP G+ GAV +++G I++I E++ + +++D ++PG ID+H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDE---LEEADEIIDLKGQYLVPGFIDIH 57
Query: 105 AH 106
H
Sbjct: 58 IH 59
Score = 29.9 bits (68), Expect = 3.3
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 409 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
G LE+ S PAKL G KG++ G ADLVV LD+D V
Sbjct: 323 GCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVV--------LDDDLNVKA 369
>gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase. This family of enzymes
are a part of a large metal dependent hydrolase
superfamily. The family includes Adenine deaminase
EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine
and ammonia. Adenine deaminases reaction is important
for adenine utilisation as a purine and also as a
nitrogen source. This family also includes
dihydroorotase and N-acetylglucosamine-6-phosphate
deacetylases, EC:3.5.1.25 These enzymes catalyze the
reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=>
D-glucosamine 6-phosphate + acetate. This family
includes the catalytic domain of urease alpha subunit.
Dihydroorotases (EC:3.5.2.3) are also included.
Length = 304
Score = 56.0 bits (134), Expect = 1e-08
Identities = 67/363 (18%), Positives = 104/363 (28%), Gaps = 67/363 (18%)
Query: 90 DYGEAVIMPGLIDVHAHLDDPGRTE-----WEGFPSGTKAAAAGGITTLIDMPLNSDPST 144
D +++PGL+D+H H ++E +G A A G+T+ +
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYN-ASALEALLNAGVLGLKSFMCPSGIN 203
R+ V V G + N AL+ L+ + S ++
Sbjct: 61 T--------------RLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLD 106
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 263
GL L R H + L
Sbjct: 107 G----------PGLEALLRE-----AKKAGLILLVGHAPADLGDGAVEKGLDALFLLALG 151
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323
E A L P G LH++ + L+ +
Sbjct: 152 HEVAEDLHLA------EILDPGAGLGLHVIAAAADLLLEGLVA-------AHAGGLAVVP 198
Query: 324 LAFSAEEIPDGDTRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 382
L + FK PP+R ++E L E L G L SDH+P P
Sbjct: 199 LELLLRDAAAAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDSP-------- 250
Query: 383 NFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHA 441
+ +L G+T E+ + PA+L G G + +G A
Sbjct: 251 ---------AGPGDLLEAALFLAALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRA 301
Query: 442 DLV 444
DLV
Sbjct: 302 DLV 304
>gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase
[Carbohydrate transport and metabolism].
Length = 380
Score = 52.7 bits (127), Expect = 2e-07
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 45 YWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
Y L + RI T GV+ G + E I V + P + +++D A+++PG ID+H
Sbjct: 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVPAELPAD---AEIIDLKGALLVPGFIDLH 58
Query: 105 AH 106
H
Sbjct: 59 IH 60
>gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid
amidohydrolases) catalyze the hydrolysis of
N-acyl-D-amino acids to produce the corresponding
D-amino acids, which are used as intermediates in the
synthesis of pesticides, bioactive peptides, and
antibiotics.
Length = 415
Score = 51.9 bits (125), Expect = 4e-07
Identities = 92/448 (20%), Positives = 147/448 (32%), Gaps = 148/448 (33%)
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFP 119
+ V I++G I +I +V+D V+ PG IDVH H D G+ W+
Sbjct: 19 TADVGIRDGRIAAIGPILSTSAR----EVIDAAGLVVAPGFIDVHTHYD--GQVFWD--- 69
Query: 120 SGTKAAAAGGITTLIDM-------PLNSD-----PSTISTETLKLK------------VD 155
+ ++ G+TT++ P N D + + +D
Sbjct: 70 PDLRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLD 129
Query: 156 AAEKRIY-VDVGFWGGLVPENAYNASAL--------------------EALLNAGVLGLK 194
A E R V+V LV A + + EAL AG LG+
Sbjct: 130 ALEARPPAVNVAA---LVGHAALRRAVMGLDAREATEEELAKMRELLREAL-EAGALGI- 184
Query: 195 SFMCPSGINDFPMTNASHIKEGL----SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDT 250
L V ARY H V+ E D++
Sbjct: 185 ------STGLAYAPRLYAGTAELVALARVAARYGGVYQTH----------VRYEGDSILE 228
Query: 251 RSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASS--------SL 302
A+ ELL + ++T G +HI HL A + L
Sbjct: 229 -----------------ALDELLRLGRET-------GRPVHISHLKSAGAPNWGKIDRLL 264
Query: 303 DLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHI 362
L+ A+ G +T + P Y A S ++ +M +
Sbjct: 265 ALIEAARAEGLQVTADVYP-YGAGSEDD-----------------------VRRIMAHPV 300
Query: 363 DMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSER 422
M SD +++G + VL + RK ++LE+ +
Sbjct: 301 VMGGSD--------GGALGKPHPRSYGDFT---RVLGH-YVRERK-LLSLEEAVRKMTGL 347
Query: 423 PAKLAGQVSKGAIAIGNHADLVVWEPEA 450
PA++ G +G IA G AD+VV++P+
Sbjct: 348 PARVFGLADRGRIAPGYRADIVVFDPDT 375
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 52.1 bits (125), Expect = 4e-07
Identities = 81/482 (16%), Positives = 136/482 (28%), Gaps = 124/482 (25%)
Query: 55 PKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD----- 109
+ G + I++G I++I + + +V+D +++PG ++ H HLD
Sbjct: 17 EGRIEDGDLVIEDGKIVAIGANAE---GPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRG 73
Query: 110 ----------PGRTEWEGFPSGTKA-------------AAAGGITTLIDMPLNSDPS--T 144
R W G TT S
Sbjct: 74 LADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADA 133
Query: 145 ISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG-LKSFMCPSGIN 203
L++ + A + DV F + E L A LG + P
Sbjct: 134 AFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGLGRDVVGLAPHFPY 193
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHA-----EMEKGSERHVKLEDDTLDTRSYSTYLK 258
+ E + +Y P+ +H E+E+ E + + LD
Sbjct: 194 TVSPELLESLDE---LARKYGLPVHIHLAETLDEVERVLEPYGARPVERLD--------- 241
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVE 318
+ +A H VHLS+ +L + A++ +V
Sbjct: 242 ------LLGLLGSHTLLA--------------HCVHLSEE----ELELLAESG---ASVV 274
Query: 319 TCP---HYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPE 375
CP L G L G L +D + +
Sbjct: 275 HCPRSNLKLG-------SGIAPV---------------RRLLERGVNVALGTDGAASNNV 312
Query: 376 LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK-YGVTLEQLASWWSERPAKLAGQVSKGA 434
L +L E ++ + L L G TL AK G G+
Sbjct: 313 LDMLRE---MRTADLLQKLAGGLLAAQLPGEALDMATL---------GGAKALGLDDIGS 360
Query: 435 IAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ +G ADLVV + H ++ S + V + G LV ++G
Sbjct: 361 LEVGKKADLVV------LDASAPHLAPLRPVSRLVFAAGGK--DVDRVLVDGRLVMEDGR 412
Query: 495 HA 496
Sbjct: 413 LL 414
>gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM;
Provisional.
Length = 383
Score = 50.9 bits (123), Expect = 8e-07
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 43 NQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
+ L++ R+V P V+ G++ I++G I +I P S +D ++PGL+D
Sbjct: 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAID-----PGASALPGAIDAEGDYLLPGLVD 56
Query: 103 VHA-HLDD-----PGRTEWEGFPSGT------KAAAAGGITT 132
+H +L+ PG +W P+ AA GITT
Sbjct: 57 LHTDNLEKHLAPRPG-VDW---PADAALAAHDAQLAAAGITT 94
Score = 34.8 bits (81), Expect = 0.086
Identities = 32/139 (23%), Positives = 44/139 (31%), Gaps = 47/139 (33%)
Query: 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 414
+ G +D+LSSD+ P +SL L + G+ L Q
Sbjct: 292 DLAAAGLLDILSSDYYP--------------------ASL---LDAAFRLADDGGLDLPQ 328
Query: 415 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRR 474
+ + PA+ AG +G IA G ADLV PV
Sbjct: 329 AVALVTANPARAAGLDDRGEIAPGKRADLVR------VRRAGGLPV-------------- 368
Query: 475 LSGKVLATISRGNLVYKEG 493
V A G V+ G
Sbjct: 369 ----VRAVWRGGRRVFLAG 383
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 48.9 bits (117), Expect = 4e-06
Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 56 KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--DDPGRT 113
+ GAV I++G I+++ EE +V+D + PGLID H HL
Sbjct: 24 GIIEDGAVLIEDGKIVAVGPEE--IDIPAGAEVIDAKGKTVTPGLIDAHTHLGFGGSRGG 81
Query: 114 EWE----GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 160
E+E G AA GGI L +T LK KR
Sbjct: 82 EFELREAGASYTEILAAGGGILPLD-----RGFTTARDGGLKATALPRLKR 127
>gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated.
Length = 406
Score = 47.9 bits (115), Expect = 7e-06
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 51 RIVTPK-------GVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
++ T G+I GA+ I++G I+ + E D P + +V+D G ++ PGLID
Sbjct: 11 QLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPA-AYAAEVIDAGGKLVTPGLID 69
Query: 103 VHAHL 107
H HL
Sbjct: 70 CHTHL 74
Score = 30.1 bits (69), Expect = 2.8
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 18/62 (29%)
Query: 431 SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVLATISRGNLV 489
+ G++ +G ADLV+W D P + Y G V + G +V
Sbjct: 362 THGSLEVGKKADLVIW--------DAPSPAEL------PYHFGVNP---VETVVKNGEVV 404
Query: 490 YK 491
Sbjct: 405 VD 406
>gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed.
Length = 569
Score = 47.4 bits (113), Expect = 1e-05
Identities = 39/150 (26%), Positives = 55/150 (36%), Gaps = 26/150 (17%)
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRN----------SKTGQVVDYGEAVIMPGLIDVHAH 106
G++ G + I++G I+ I + P V + PG IDVH H
Sbjct: 83 GIVKGDIGIRDGRIVGIGKAGN-PDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVH 141
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAAEKRIYVD 164
D + A A GITT++ L S + AAE V+
Sbjct: 142 FDSAQLVD---------HALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEA-WPVN 191
Query: 165 VGFWGGLVPENAYNASALEALLNAGVLGLK 194
GF G N+ +AL + AG GLK
Sbjct: 192 FGFLG---RGNSSKPAALIEQVEAGACGLK 218
>gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase.
[Central intermediary metabolism, Amino sugars].
Length = 380
Score = 43.7 bits (103), Expect = 2e-04
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 43 NQYWLTSKRIVTPKGVI-SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
Y L IVT VI +GAV I +G I ++ +E + K +D V+ PG I
Sbjct: 3 ESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKE---IDLPGNVLTPGFI 59
Query: 102 DVHAH 106
D+H H
Sbjct: 60 DIHIH 64
>gnl|CDD|238628 cd01303, GDEase, Guanine deaminase (GDEase). Guanine deaminase is
an aminohydrolase responsible for the conversion of
guanine to xanthine and ammonia, the first step to
utilize guanine as a nitrogen source. This reaction also
removes the guanine base from the pool and therefore can
play a role in the regulation of cellular GTP and the
guanylate nucleotide pool.
Length = 429
Score = 43.4 bits (103), Expect = 2e-04
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAH 106
V G + + +GNII+ + E R +K G +V+D I+PG ID H H
Sbjct: 23 VVEDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIH 73
>gnl|CDD|225985 COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 377
Score = 43.1 bits (102), Expect = 2e-04
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
L++ RIV V++G+V I++G I I S +D ++PGLI++H
Sbjct: 2 ILSNARIVLEDRVVNGSVLIRDGLIADID-----EGISPLAAGIDGEGDYLLPGLIELHT 56
Query: 106 -HLDD-----PGRTEWE---GFPSGTKAAAAGGITTLID 135
+L+ PG W + AA GITT++D
Sbjct: 57 DNLERFMTPRPG-VRWPPIAAILAHDAQLAASGITTVLD 94
Score = 38.5 bits (90), Expect = 0.006
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 414
E G +D+LSSD+ P + L A ++ L ++L Q
Sbjct: 288 ELAQHGLLDILSSDYVP----------ASLLHAAFRLADLGS------------NISLPQ 325
Query: 415 LASWWSERPAKLAGQVSKGAIAIGNHADLV 444
+ ++ PA+ G +G IA G ADLV
Sbjct: 326 AVALVTKNPARALGLTDRGRIAPGLRADLV 355
>gnl|CDD|236366 PRK09045, PRK09045, N-ethylammeline chlorohydrolase; Provisional.
Length = 443
Score = 43.0 bits (102), Expect = 3e-04
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 30/114 (26%)
Query: 53 VTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL--- 107
V P GV+ AV I++G I++I+ + + V+ + V++PGLI+ H H
Sbjct: 19 VEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMS 78
Query: 108 ------DD------------PGRTEW--EGF-PSGTKAAAA----GGITTLIDM 136
DD P W E F GT A A GG T DM
Sbjct: 79 LLRGLADDLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDM 132
>gnl|CDD|238621 cd01296, Imidazolone-5PH,
Imidazolonepropionase/imidazolone-5-propionate hydrolase
(Imidazolone-5PH) catalyzes the third step in the
histidine degradation pathway, the hydrolysis of
(S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to
N-formimidoyl-L-glutamate. In bacteria, the enzyme is
part of histidine utilization (hut) operon.
Length = 371
Score = 42.6 bits (101), Expect = 3e-04
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDDPG--RTEWE--- 116
+ I++G I ++ P + +D G + PGL+D H HL G E+
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARL 60
Query: 117 -GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLK 151
G AA GGI + + + + L+
Sbjct: 61 AGASYEEILAAGGGILSTVRATRAASEDELFASALR 96
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 42.3 bits (100), Expect = 5e-04
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 62 AVEIKEGNIISIVSEEDW-PRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120
AV IK+G I+++ S+ + +V+D ++PG +D H HL G + E
Sbjct: 26 AVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELNLD 85
Query: 121 GTKAAAA 127
G ++
Sbjct: 86 GVRSLDD 92
Score = 31.2 bits (71), Expect = 1.7
Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 50/231 (21%)
Query: 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326
A+ L + R +G I H S D + G + P++L
Sbjct: 345 GAVDAALDAFEKARKKNGLKGLRHRIEHAELV--SPDQIERFAKLG--VIASVQPNFLFS 400
Query: 327 SAEEIPD--GDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNF 384
E D G+ R + P R + G D + P
Sbjct: 401 DGEWYVDRLGEERASRSYPFRSLLKA----GVPLAGGSDAPVEPYDP------------- 443
Query: 385 LKAWGGISSLQFVLPVTWSYGRKYG---VTLEQLASWWSERPAKLAGQVS-KGAIAIGNH 440
W GI + V T +T E+ ++E A +G KG++ G
Sbjct: 444 ---WLGIYAA--VTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKL 498
Query: 441 ADLVVWE-PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490
AD V + + D+ KV+ TI G +VY
Sbjct: 499 ADFAVLDRDPFTVDPDSIKDT-----------------KVVLTIVAGKVVY 532
>gnl|CDD|238631 cd01306, PhnM, PhnM is believed to be a subunit of the membrane
associated C-P lyase complex. C-P lyase is thought to
catalyze the direct cleavage of inactivated C-P bonds to
yield inorganic phosphate and the corresponding
hydrocarbons. It is responsible for cleavage of
alkylphosphonates, which are utilized as sole phosphorus
sources by many bacteria.
Length = 325
Score = 41.5 bits (98), Expect = 6e-04
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 29/106 (27%)
Query: 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 414
E G +D+LSSD+ P +SL L + G +L +
Sbjct: 241 ELAAHGLLDILSSDYVP--------------------ASL---LHAAFRLADLGGWSLPE 277
Query: 415 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPV 460
+ S PA+ G +G+IA G ADL++ + + PV
Sbjct: 278 AVALVSANPARAVGLTDRGSIAPGKRADLIL------VDDMDGVPV 317
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 41.9 bits (99), Expect = 8e-04
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 51 RIVTP--KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
RIV + G + I G I+ ++ E +V+D I+PG ID H H++
Sbjct: 32 RIVDVVTGEIYKGDIAIAGGRIVGVIGEYRAEAT----EVIDAAGRYIVPGFIDAHLHIE 87
Query: 109 DPGRTEWEGFPSG-TKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEK---R 160
T PS +A G TT++ SDP I+ + ++ +D A++ +
Sbjct: 88 SSMLT-----PSEFARAVLPHGTTTVV-----SDPHEIANVLGEDGIRFMLDEAKETPLK 137
Query: 161 IYV 163
+YV
Sbjct: 138 VYV 140
>gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the
atrazine degradation pathway and related hydrolases.
Atrazine, a chlorinated herbizide, can be catabolized by
a variety of different bacteria. The first three steps
of the atrazine dehalogenation pathway are catalyzed by
atrazine chlorohydrolase (AtzA), hydroxyatrazine
ethylaminohydrolase (AtzB), and N-isopropylammelide
N-isopropylaminohydrolase (AtzC). All three enzymes
belong to the superfamily of metal dependent hydrolases.
AtzA and AtzB, beside other related enzymes are
represented in this CD.
Length = 411
Score = 41.0 bits (97), Expect = 0.001
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 28/103 (27%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DD-- 109
G V +++G I+++ +V+D V+MPGL++ H HL DD
Sbjct: 20 GDVLVEDGRIVAVGPALP-LPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLP 78
Query: 110 ------------PGRTEWEGFPSGTKAAAA----GGITTLIDM 136
E G A A G TT DM
Sbjct: 79 LMEWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADM 121
Score = 29.1 bits (66), Expect = 5.8
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 424 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 483
AK G G++ +G ADL++ +LD H + + P IS + G V I
Sbjct: 346 AKALGLDEIGSLEVGKKADLILI------DLDGPHLLPVHDP-ISHLVYSANGGDVDTVI 398
Query: 484 SRGNLVYKEG 493
G +V ++G
Sbjct: 399 VNGRVVMEDG 408
>gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases,
subgroup A is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 342
Score = 41.1 bits (97), Expect = 0.001
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 87 QVVDYGEAVIMPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAAG---------GITTLID 135
QV+D G +MPGLID H HL D P + A G TT+ D
Sbjct: 2 QVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRD 61
Query: 136 M 136
Sbjct: 62 A 62
>gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function
prediction only].
Length = 386
Score = 40.9 bits (96), Expect = 0.001
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
LT R++ P I I N I + +D+P ++T Q++D ++ PGLID+H H
Sbjct: 8 LTGGRLIDPARGIDEITNIAIINGK-IAAADDYPAPAET-QIIDADGCIVSPGLIDLHVH 65
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLID 135
+ G TE P A G+TT++D
Sbjct: 66 V-YYGGTEGGVRPD--MYGAPNGVTTVVD 91
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 40.6 bits (96), Expect = 0.001
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 51 RIVTPKGVISGAVE--IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
R++ P I G ++ I++G I ++ + S+ +V+D + PG ID+H H+
Sbjct: 7 RVIDPANGIDGVIDIAIEDGKIAAVAGD---IDGSQAKKVIDLSGLYVSPGWIDLHVHV- 62
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLID 135
PG T + P G+TT++D
Sbjct: 63 YPGSTPYGDEPDE--VGVRSGVTTVVD 87
>gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases,
subgroup B is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 338
Score = 40.4 bits (95), Expect = 0.001
Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 36/182 (19%)
Query: 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG----T 122
E I+ V Q+VD G + PG ID+H H+ ++G
Sbjct: 5 ENGKIAAVGAALAA--PAATQIVDAGGCYVSPGWIDLHVHV-------YQGGTRYGDRPD 55
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKV-DAAEKRIY--VDVGFWGGLVPENAYN- 178
G+TT++D + + + V + + R+Y +++ G + + +
Sbjct: 56 MIGVKSGVTTVVDA---GSAGADNIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDP 112
Query: 179 ----ASALEALLNAG---VLGLKSFMCPSGINDF---PMTNASHIKEGLSVLARYKRPLL 228
A+ A ++GLK+ S + ++ P+ A I + + PL+
Sbjct: 113 DNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAKKIAKEADL------PLM 166
Query: 229 VH 230
VH
Sbjct: 167 VH 168
Score = 28.8 bits (65), Expect = 6.7
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 396 FVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE-PEAEFEL 454
+ L T S G+ LE++ + PA++ G G +A+G ADL V++ + EL
Sbjct: 263 YALATTLSKLLALGMPLEEVIEAVTANPARMLGLAEIGTLAVGYDADLTVFDLKDGRVEL 322
>gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases,
subgroup C is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 359
Score = 40.0 bits (94), Expect = 0.002
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 23/94 (24%)
Query: 398 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVWEPEAEFELDN 456
L + + KYG++ E+ + PAK+ G + G++ G ADLVVW N
Sbjct: 288 LNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVVW---------N 338
Query: 457 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVY 490
P+ K G LVY
Sbjct: 339 GDPLEPT-------------SKPEQVYIDGRLVY 359
Score = 38.8 bits (91), Expect = 0.005
Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 46/205 (22%)
Query: 67 EGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-DPGRTEWEG-------- 117
+G I+++ +E P +V+D + PGLID H+HL D E
Sbjct: 1 DGKIVAVGAEITTP---ADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETD 57
Query: 118 --------------FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
K A AGG+TT+ +P +++ +K E
Sbjct: 58 PVTPHVRAIDGINPDDEAFKRARAGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMFIK 117
Query: 164 -DVGF-------------WGGLVPENAY--NASALEALLNAGVLGLKSFMCPSGINDFPM 207
G G P A +A + A G K + + D P
Sbjct: 118 APAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKAQEYGRKYDLGKNAKKDPPE 177
Query: 208 TNASHIK-EGLSVLARYKRPLLVHA 231
+ +K E L + + + P+ +HA
Sbjct: 178 RD---LKLEALLPVLKGEIPVRIHA 199
>gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ
is a Bacillus subtilis ORF of unknown function. The
Arabidopsis homolog LAF3 has been identified as a factor
required for photochrome A signalling.
Length = 479
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 62 AVEIKEGNIISIVSEED-WPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE----WE 116
AV +++G I+++ S+ + +V+D ++PG ID H+HL G +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLLGGLSLLWLDLS 60
Query: 117 GFPSGTKAAAA 127
G S +A A
Sbjct: 61 GVTSKEEALAR 71
Score = 28.4 bits (64), Expect = 9.7
Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 38/189 (20%)
Query: 267 AAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326
A+ +L + D P I H S D + G + P++L
Sbjct: 319 RAVDTVLDALEAALKDNPRADHRHRIEHAQLV--SPDDIPRFAKLG--VIASVQPNHLYS 374
Query: 327 ---SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
+AE+ G+ R K + P R + + SD P+
Sbjct: 375 DGDAAEDRRLGEERAKRSYPFRSLLDA----GVPVALG-----SDAPVAPPD-------- 417
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYG-----VTLEQ-LASWWSERPAKLAGQVS-KGAIA 436
GI + V T G G ++LE+ L + ++ A G+ KG++
Sbjct: 418 ---PLLGIWAA--VTRKTPG-GGVLGNPEERLSLEEALRA-YTIGAAYAIGEEDEKGSLE 470
Query: 437 IGNHADLVV 445
G AD VV
Sbjct: 471 PGKLADFVV 479
>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
This family consists of proteins from in the PhnM
family. PhnM is a a protein associated with phosphonate
utilization in a number of bacterial species. In
Pseudomonas stutzeri WM88, a protein that is part of a
system for the oxidation of phosphites (another form of
reduced phosphorous compound) scores between trusted and
noise cutoffs [Energy metabolism, Other].
Length = 376
Score = 39.2 bits (92), Expect = 0.004
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
L++ R+V V+ G+V I++G I I + D +++PGLID+H
Sbjct: 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPVALAEAI-----DGEGDLLLPGLIDLHT 55
Query: 106 -HLDD-----PGRTEWE---GFPSGTKAAAAGGITTLID 135
+L+ PG +W K AA GITT+ D
Sbjct: 56 DNLERHMSPRPG-VDWPIDAAIVEHDKQLAAAGITTVFD 93
Score = 37.7 bits (88), Expect = 0.012
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 355 EALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQ 414
E +G +D+L+SD+ P + L A F L G+ L Q
Sbjct: 287 ELAHEGLLDVLASDYVP----------ASLLLA-------AFQLA-----DDVEGIPLPQ 324
Query: 415 LASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEA 450
++ PA+ G +G+IA G ADLV
Sbjct: 325 AVKMVTKNPARAVGLSDRGSIAPGKRADLVRVHRVD 360
>gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated.
Length = 509
Score = 39.3 bits (92), Expect = 0.004
Identities = 60/270 (22%), Positives = 86/270 (31%), Gaps = 78/270 (28%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDM---------- 136
+ +D V+ PG ID+HAH + A G+TT +++
Sbjct: 60 RTIDATGLVVAPGFIDLHAHGQSVA---------AYRMQAFDGVTTALELEAGVLPVARW 110
Query: 137 ---------PLNSDPST------ISTET-LKLKVDAAEKRIYVDVGFWGGLVP---ENAY 177
PLN S I+ T + + A+ + W E A
Sbjct: 111 YAEQAGEGRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQERAATPAELAE 170
Query: 178 NASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGS 237
LE L+ G LG+ G P T E + AR P H
Sbjct: 171 ILELLEQGLDEGALGIGI-----GAGYAPGTGHKEYLELARLAARAGVPTYTHVR----- 220
Query: 238 ERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVH--- 294
YL P A +EL+ A +T GAH+HI H
Sbjct: 221 ------------------YLSNVDPRSSVDAYQELIAAAAET-------GAHMHICHVNS 255
Query: 295 --LSDASSSLDLLMEAKTNGDSITVETCPH 322
L D L L+ +A+ G +T E P+
Sbjct: 256 TSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285
>gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes
guanine deaminase, which hydrolyzes guanine to xanthine
and ammonia. Xanthine can then be converted to urate by
xanthine dehydrogenase, and urate subsequently degraded.
In some bacteria, the guanine deaminase gene is found
near the xdhABC genes for xanthine dehydrogenase.
Non-homologous forms of guanine deaminase also exist, as
well as distantly related forms outside the scope of
this model [Purines, pyrimidines, nucleosides, and
nucleotides, Other].
Length = 401
Score = 38.4 bits (90), Expect = 0.007
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 61 GAVEIKEGNIISIVSEEDW-PRNSKTGQVVDYGEAVIMPGLIDVHAH 106
G + ++ G I+++ + ++ DY +IMPG ID H H
Sbjct: 7 GLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIH 53
>gnl|CDD|184438 PRK13985, ureB, urease subunit beta; Provisional.
Length = 568
Score = 38.3 bits (89), Expect = 0.008
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 35/201 (17%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISI--VSEEDWPRNSKTGQVVDYG-EA------VIM 97
+T+ I+ G+ + IK+G I I +D K V EA ++
Sbjct: 69 ITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVT 128
Query: 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI---DMPLNSDPSTISTE---TLK 151
G ID H H P + P+ A A G+TT+I P + +T T LK
Sbjct: 129 AGGIDTHIHFISPQQ-----IPT----AFASGVTTMIGGGTGPADGTNATTITPGRRNLK 179
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 211
+ AAE+ +++GF G N+ N ++L + AG +G K I++ T S
Sbjct: 180 WMLRAAEE-YSMNLGFLG---KGNSSNDASLADQIEAGAIGFK-------IHEDWGTTPS 228
Query: 212 HIKEGLSVLARYKRPLLVHAE 232
I L V +Y + +H +
Sbjct: 229 AINHALDVADKYDVQVAIHTD 249
>gnl|CDD|180428 PRK06151, PRK06151, N-ethylammeline chlorohydrolase; Provisional.
Length = 488
Score = 38.1 bits (89), Expect = 0.010
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 87 QVVDYGEAVIMPGLIDVHAHLD 108
+V+D G A++ PG ID+ A D
Sbjct: 46 RVIDAGNALVGPGFIDLDALSD 67
>gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this
model includes an experimentally characterized adenine
deaminase of Bacillus subtilis. It also include a member
from Methanobacterium thermoautotrophicum, in which
adenine deaminase activity has been detected [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 552
Score = 37.8 bits (88), Expect = 0.013
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 56 KGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEW 115
+I G + I G+I + +V+D +PG ID H H++ T
Sbjct: 15 GEIIPGDIAIANGHIAGVGKYNGV-------KVIDALGEYAVPGFIDAHIHIESSMLT-- 65
Query: 116 EGFPSG-TKAAAAGGITTLIDMPLNSDPSTI 145
PS K G+TT++ SDP I
Sbjct: 66 ---PSEFAKLVLPHGVTTVV-----SDPHEI 88
>gnl|CDD|238221 cd00375, Urease_alpha, Urease alpha-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, fungi
and plants. Their primary role is to allow the use of
external and internally generated urea as a nitrogen
source. The enzyme consists of 3 subunits, alpha, beta
and gamma, which can be fused and present on a single
protein chain and which in turn forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers.
Length = 567
Score = 37.3 bits (87), Expect = 0.017
Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 28/163 (17%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISI--VSEEDWPRNSKTGQVVDYGEAVI-------M 97
+T+ I+ G+ + IK+G I++I D +V VI
Sbjct: 69 ITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVT 128
Query: 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI------DMPLNSDPSTISTETLK 151
G ID H H P + E A A GITT+I + T +K
Sbjct: 129 AGGIDTHVHFICPQQIE---------EALASGITTMIGGGTGPAAGTKATTCTPGPWNIK 179
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194
+ AA+ + V++GF G N + AL + AG GLK
Sbjct: 180 RMLQAADG-LPVNIGFLG---KGNGSSPDALAEQIEAGACGLK 218
Score = 28.4 bits (64), Expect = 9.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 433 GAIAIGNHADLVVWEPE 449
G++ +G ADLV+WEP
Sbjct: 423 GSVEVGKLADLVLWEPA 439
>gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related
metal-dependent hydrolases. Cytosine deaminases (CDs)
catalyze the deamination of cytosine, producing uracil
and ammonia. They play an important role in pyrimidine
salvage. CDs are present in prokaryotes and fungi, but
not mammalian cells. The bacterial enzymes, but not the
fungal enzymes, are related to the adenosine deaminases
(ADA). The bacterial enzymes are iron dependent and
hexameric.
Length = 398
Score = 36.8 bits (86), Expect = 0.021
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 46 WLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDV 103
L + R+ + + I++G I +I P + + VD +++P +D
Sbjct: 1 LLRNARLADGGTALV-DIAIEDGRIAAIG-----PALAVPPDAEEVDAKGRLVLPAFVDP 54
Query: 104 HAHLD 108
H HLD
Sbjct: 55 HIHLD 59
>gnl|CDD|183010 PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase;
Provisional.
Length = 382
Score = 36.9 bits (86), Expect = 0.023
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 45 YWLTSKRIVTPKGVISG-AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y LT+ RI T V+ AV I +G I ++ + P + D A++ PG ID+
Sbjct: 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQ---RDLNGAILSPGFIDL 58
>gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional.
Length = 388
Score = 36.7 bits (86), Expect = 0.024
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPG-------RTEWEG 117
I G II+I + P +V+D +++PG ID H H+ G RT
Sbjct: 23 IAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEVQ 82
Query: 118 FPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAE 158
T+A GITT++ + L +D T S E+L K A E
Sbjct: 83 LSDLTEA----GITTVVGL-LGTDGITRSMESLLAKARALE 118
Score = 32.9 bits (76), Expect = 0.35
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 445
G+ LE + A+ KG I G ADL+V
Sbjct: 320 DEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLV 358
>gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated.
Length = 438
Score = 36.5 bits (85), Expect = 0.026
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 33 SHSECSLLPYNQYWLTSKRI------------VTPKGVISGAVEIKEGNIISIV----SE 76
S SL +YWL + R+ T +G++ +EI +G I +I+ +
Sbjct: 1 MSSFFSLPESGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAP 60
Query: 77 EDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
++ P VD ++ P +D+H HLD
Sbjct: 61 DELPA-------VDLKGRMVWPCFVDMHTHLD 85
>gnl|CDD|236419 PRK09228, PRK09228, guanine deaminase; Provisional.
Length = 433
Score = 36.3 bits (85), Expect = 0.034
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 87 QVVDYGEAVIMPGLIDVHAH 106
+V DY +I+PG ID H H
Sbjct: 59 EVTDYRGKLILPGFIDTHIH 78
>gnl|CDD|237305 PRK13207, ureC, urease subunit alpha; Reviewed.
Length = 568
Score = 36.3 bits (85), Expect = 0.042
Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 50/168 (29%)
Query: 52 IVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQ---------VVDYGEAVI------ 96
I+ G++ + IK+G I++I K G ++ G VI
Sbjct: 76 ILDHWGIVKADIGIKDGRIVAI---------GKAGNPDIQDGVDIIIGPGTEVIAGEGLI 126
Query: 97 -MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------ 149
G ID H H P + E A A G+TT+I + P+T + T
Sbjct: 127 VTAGGIDTHIHFICPQQIE---------EALASGVTTMIGG--GTGPATGTNATTCTPGP 175
Query: 150 --LKLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 194
+ + AA+ +++GF G G NA ALE + AG +GLK
Sbjct: 176 WHIHRMLQAADA-FPMNIGFLGKG----NASLPEALEEQIEAGAIGLK 218
>gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 36.1 bits (84), Expect = 0.044
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
GA+ I+ I+ I + ++ + +D +IMPGLI+ H H+
Sbjct: 22 GAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHI 68
>gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit
A. Members of this largely archaeal protein family are
subunit A of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit A. Note
that this model does not distinguish tungsten (FwdA)
from molybdenum-containing (FmdA) forms of this enzyme;
a single gene from this family is expressed
constitutively in Methanobacterium thermoautotrophicum,
which has both tungsten and molybdenum forms and may
work interchangeably.
Length = 556
Score = 35.8 bits (83), Expect = 0.048
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 45 YWLTSKRIVTPKGVISGAVE---IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
+ + + P I G V I++G I+ VS +K +V+D ++M G +
Sbjct: 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVS-----GGTKPAKVIDASGKLVMAGGV 56
Query: 102 DVHAH 106
D H H
Sbjct: 57 DSHTH 61
>gnl|CDD|235873 PRK06846, PRK06846, putative deaminase; Validated.
Length = 410
Score = 35.8 bits (83), Expect = 0.056
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 43 NQYWLTSKRI----VTPKGVISGA------VEIKEGNIISIVSEEDWPRNSKTGQVVDYG 92
YWLT+ R+ GVI +EI++G I++I + T D
Sbjct: 4 PHYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNK--QVPDATLPTYDAN 61
Query: 93 EAVIMPGLIDVHAHLD 108
+++P ++H HLD
Sbjct: 62 GLLMLPAFREMHIHLD 77
>gnl|CDD|183966 PRK13309, ureC, urease subunit alpha; Reviewed.
Length = 572
Score = 34.9 bits (80), Expect = 0.12
Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 40/217 (18%)
Query: 57 GVISGAVEIKEGNIISI------VSEEDWPRNSKTGQVVD--YGEAVIM-PGLIDVHAHL 107
GVI V I++G I+ I + + + G D GE +I+ ID H HL
Sbjct: 83 GVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHL 142
Query: 108 DDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------LKLKVDAAEKRI 161
P + A + G+TT + T T ++ + + E +
Sbjct: 143 ISPQQAY---------HALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEG-L 192
Query: 162 YVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLA 221
V+VG G N+Y L AGV G K D+ T A+ ++ L V
Sbjct: 193 PVNVGILG---KGNSYGRGPLLEQAIAGVAGYKVH------EDWGATAAA-LRHALRVAD 242
Query: 222 RYKRPLLVHAEM--EKGSERHVKLEDDTLDTRSYSTY 256
+ VH + E G +V+ D + R+ T+
Sbjct: 243 EVDIQVAVHTDSLNECG---YVEDTIDAFEGRTIHTF 276
>gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The
L-isoaspartyl derivative of Asp arises non-enzymatically
over time as a form of protein damage. In this
isomerization, the connectivity of the polypeptide
changes to pass through the beta-carboxyl of the side
chain. Much but not all of this damage can be repaired
by protein-L-isoaspartate (D-aspartate)
O-methyltransferase. This model describes the
isoaspartyl dipeptidase IadA, apparently one of two such
enzymes in E. coli, an enzyme that degrades isoaspartyl
dipeptides and may unblock degradation of proteins that
cannot be repaired. This model also describes closely
related proteins from other species (e.g. Clostridium
perfringens, Thermoanaerobacter tengcongensis) that we
assume to be equivalent in function. This family shows
homology to dihydroorotases [Protein fate, Degradation
of proteins, peptides, and glycopeptides].
Length = 389
Score = 34.4 bits (79), Expect = 0.13
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 65 IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM-PGLIDVHAHLDDPG-------RTEWE 116
I II+I E ++ VV E +I PG ID H H+ G RT
Sbjct: 22 IANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81
Query: 117 GFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159
TK GG+TT++ + L +D T E+L K A E+
Sbjct: 82 TLSDITK----GGVTTVVGL-LGTDGITRHMESLLAKARALEE 119
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 34.0 bits (78), Expect = 0.20
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
+ I I+ + +++ ++ PGLID HAH+ G EG
Sbjct: 25 LRIINDIIVDADKYPV----ASETRIIHADGCIVTPGLIDYHAHVFYDGT---EGGVRPD 77
Query: 123 KAAAAGGITTLID 135
G+TT++D
Sbjct: 78 MYMPPNGVTTVVD 90
>gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional.
Length = 588
Score = 34.0 bits (78), Expect = 0.21
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 57 GVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWE 116
G ISG + IK I + +E ++ Q +D A +PG ID H H++ T
Sbjct: 46 GEISGPIVIKGRYIAGVGAEYA---DAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT 102
Query: 117 GFPSGTKAAAAGGITTLIDMP 137
F + T G+TT+I P
Sbjct: 103 -FETATLPR---GLTTVICDP 119
>gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the
third step in histidine degradation [Energy metabolism,
Amino acids and amines].
Length = 377
Score = 33.5 bits (77), Expect = 0.22
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGR--TEWE- 116
+ I G I+ I P T +++D G ++ PGL+D H HL G E+E
Sbjct: 3 DAVILIHGGKIVWIGQLAALPGEEAT-EIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEM 61
Query: 117 ---GFPSGTKAAAAGGI 130
G A GGI
Sbjct: 62 KLQGASYLEILAQGGGI 78
>gnl|CDD|238620 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea.
Length = 422
Score = 33.7 bits (78), Expect = 0.22
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 90 DYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI 145
D I+PG ID H H++ T E F KA G TT+I +DP I
Sbjct: 1 DAEGKYIVPGFIDAHLHIESSMLTPSE-F---AKAVLPHGTTTVI-----ADPHEI 47
>gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional.
Length = 418
Score = 33.7 bits (77), Expect = 0.24
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 31/110 (28%)
Query: 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH---------LD 108
++ G V I EGN I V + N + ++D V+MPGLI+ HAH D
Sbjct: 19 ILQGNVYI-EGNKIVYVGDV----NEEADYIIDATGKVVMPGLINTHAHVGMTASKGLFD 73
Query: 109 D--------------PGRTEWEGFPS---GTKAAAAGGITTLIDMPLNSD 141
D RT + S G GIT +D+ + D
Sbjct: 74 DVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYSED 123
>gnl|CDD|216250 pfam01026, TatD_DNase, TatD related DNase. This family of proteins
are related to a large superfamily of metalloenzymes.
TatD, a member of this family has been shown
experimentally to be a DNase enzyme.
Length = 255
Score = 33.0 bits (76), Expect = 0.24
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 12/70 (17%)
Query: 101 IDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK- 159
ID H HLD E + A G+T ++ + E ++ A K
Sbjct: 1 IDAHCHLDFKDFD--EDRDEVIERAREAGVTAVVVV-------GTDLEDFLRALELARKY 51
Query: 160 --RIYVDVGF 167
++Y VG
Sbjct: 52 PGKVYAAVGV 61
>gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase;
Reviewed.
Length = 451
Score = 33.3 bits (77), Expect = 0.27
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 60 SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
G + ++ G I+ + P +V D V+ PGL++ H H
Sbjct: 23 DGGLVVEGGRIVEVGPGGALP--QPADEVFDARGHVVTPGLVNTHHHF 68
>gnl|CDD|219672 pfam07969, Amidohydro_3, Amidohydrolase family.
Length = 392
Score = 33.2 bits (76), Expect = 0.32
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 359 DGHIDMLSSDHSPTVPE-LKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLAS 417
G L SD + + + + ++LE+ +
Sbjct: 312 AGVKVALGSDAPVATYDPWSGIGAAVMRRTAEMLE--------GRVLKPDERLSLEEALA 363
Query: 418 WWSERPAKLAGQ-VSKGAIAIGNHADLVV 445
++ PA G KG +A+G ADLV+
Sbjct: 364 LYTRGPAYALGLEDRKGTLAVGKDADLVI 392
Score = 30.9 bits (70), Expect = 1.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 95 VIMPGLIDVHAHLDDPG---RTEWEGFPSGTKAAAAGGI 130
+++PG +D H HLD G E + +G+ A +
Sbjct: 1 LVLPGFVDPHTHLDGTGLNLGRELDLSGTGSVAGGLALL 39
>gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase
hydrolyzes the beta-L-isoaspartyl linkages in
dipeptides, as part of the degradative pathway to
eliminate proteins with beta-L-isoaspartyl peptide
bonds, bonds whereby the beta-group of an aspartate
forms the peptide link with the amino group of the
following amino acid. Formation of this bond is a
spontaneous nonenzymatic reaction in nature and can
profoundly effect the function of the protein.
Isoaspartyl dipeptidase is an octameric enzyme that
contains a binuclear zinc center in the active site of
each subunit and shows a strong preference of
hydrolyzing Asp-Leu dipeptides.
Length = 387
Score = 32.4 bits (74), Expect = 0.53
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 333 DGDTRFKCAPPIRDAANKEKLWEA-LMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 391
D +F+ +R + ++L E + I SSD + ++P K + GN + G+
Sbjct: 249 SIDPQFRKEGEVRPSEALKRLLEQGVPLERITF-SSDGNGSLP--KFDENGNLVGL--GV 303
Query: 392 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 449
S+ +L + + LE + A++ KG I G ADLV+ + +
Sbjct: 304 GSVDTLLREVREAVKCGDIPLEVALRVITSNVARILKLRKKGEIQPGFDADLVILDKD 361
Score = 30.1 bits (68), Expect = 2.9
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 86 GQVVDYGEAVIMPGLIDVHAHLDDPG-------RTEWEGFPSGTKAAAAGGITTLIDMPL 138
VVD +++PG ID H H+ G RT T A G+TT++ L
Sbjct: 42 VTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTA----GVTTVVGC-L 96
Query: 139 NSDPSTISTETLKLKVDAAE 158
+D + S E L K A E
Sbjct: 97 GTDGISRSMEDLLAKARALE 116
>gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional.
Length = 391
Score = 32.2 bits (74), Expect = 0.67
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 53 VTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
V P G + + I++G I +I P + +V D G A+ +PGL+D H HLD
Sbjct: 9 VRPAGGAAVDILIRDGRIAAIGPALAAPPGA---EVEDGGGALALPGLVDGHIHLD 61
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 32.0 bits (73), Expect = 0.70
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 38 SLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM 97
++ N Y LT KG + + E I+ VSE V+D +V+M
Sbjct: 3 DIIIKNAYVLTMDAGDLKKGSV-----VIEDGTITEVSEST---PGDADTVIDAKGSVVM 54
Query: 98 PGLIDVHAHL 107
PGL++ H H
Sbjct: 55 PGLVNTHTHA 64
>gnl|CDD|180657 PRK06687, PRK06687, chlorohydrolase; Validated.
Length = 419
Score = 31.9 bits (72), Expect = 0.73
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 84 KTGQVVDYGEAVIMPGLIDVHAH---------LDDPGRTEW 115
+ Q++DY A IMPGL++ H H DD EW
Sbjct: 44 QAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNLHEW 84
>gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional.
Length = 445
Score = 31.9 bits (73), Expect = 0.94
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 30/106 (28%)
Query: 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------D 108
++ G V I++ I ++ D +D V++PGLI H HL D
Sbjct: 19 IVDGDVLIEDDRIAAVGDRLDLED---YDDHIDATGKVVIPGLIQGHIHLCQTLFRGIAD 75
Query: 109 DPGRTEW--------EGF--PSGTKAAA--------AGGITTLIDM 136
D +W E +A G TT++DM
Sbjct: 76 DLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDM 121
>gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA.
Members of this protein family are found exclusively in
genomes that contain putative set of labile
selenium-dependent enzyme accessory proteins as well as
homologs of a labile selenium-dependent purine
hydroxylase. A mutant in this gene in Escherichia coli
had improved stationary phase viability. The function is
unknown.
Length = 441
Score = 31.3 bits (71), Expect = 1.2
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
G + I I ++ E+ + +D +IMPG I+ H H
Sbjct: 21 GDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHF 67
>gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional.
Length = 408
Score = 31.1 bits (71), Expect = 1.3
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 47 LTSKRIVTPK---GVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
+ + I T ++ GAV + I+ I E+ + ++ + +V++P I+
Sbjct: 4 IGASYIFTCDENFEILEDGAVVF-DDKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFIN 62
Query: 103 VHAHL 107
H HL
Sbjct: 63 PHTHL 67
>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 31.5 bits (71), Expect = 1.4
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 63 VEIKEGNIISI-VSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSG 121
V I++G I ++ D + + VD ++ PG IDVH H D +
Sbjct: 28 VGIRDGVIAAVAKGALD---GTGCPEEVDAAGRIVAPGFIDVHTHYD--AEVLLDPG--- 79
Query: 122 TKAAAAGGITTLI 134
+ + G+TT++
Sbjct: 80 LRPSVRHGVTTVV 92
>gnl|CDD|223875 COG0804, UreC, Urea amidohydrolase (urease) alpha subunit [Amino
acid transport and metabolism].
Length = 568
Score = 31.2 bits (71), Expect = 1.4
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 92 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET- 149
GE I+ G ID H H P + E A A GITT+I + P+ + T
Sbjct: 122 GEGKIVTAGGIDTHIHFICPQQIE---------EALASGITTMIGG--GTGPADGTNATT 170
Query: 150 -------LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLK 194
+ + AA+ + +++GF G NA N + L + AG +GLK
Sbjct: 171 CTPGPWHIARMLQAADG-LPMNIGFLG---KGNASNPAPLAEQIEAGAIGLK 218
>gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A;
Methanogenic bacteria and archea derive the energy for
autotrophic growth from methanogenesis, the reduction of
CO2 with molecular hydrogen as the electron donor. FMDH
catalyzes the first step in methanogenesis, the
formyl-methanofuran synthesis. In this step, CO2 is
bound to methanofuran and subsequently reduced to the
formyl state with electrons derived from hydrogen.
Length = 541
Score = 30.8 bits (70), Expect = 2.0
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 47 LTSKRIVTPKGVISGAVE---IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
+ + + P I+G I++G I+ S +K +V+D V+M G +D+
Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSS------GAKPAKVIDASGKVVMAGGVDM 54
Query: 104 HAH 106
H+H
Sbjct: 55 HSH 57
>gnl|CDD|216907 pfam02156, Glyco_hydro_26, Glycosyl hydrolase family 26.
Length = 309
Score = 29.7 bits (67), Expect = 3.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 99 GLIDVHAHLDDPGRTEWEGFPSGT 122
G++ V H ++PG+ GF +G
Sbjct: 88 GIVQVSWHWNNPGKQWGRGFYTGA 111
>gnl|CDD|143396 cd07077, ALDH-like, NAD(P)+-dependent aldehyde dehydrogenase-like
(ALDH-like) family. The aldehyde dehydrogenase-like
(ALDH-like) group of the ALDH superfamily of
NAD(P)+-dependent enzymes which, in general, oxidize a
wide range of endogenous and exogenous aliphatic and
aromatic aldehydes to their corresponding carboxylic
acids and play an important role in detoxification.
This group includes families ALDH18, ALDH19, and ALDH20
and represents such proteins as gamma-glutamyl phosphate
reductase, LuxC-like acyl-CoA reductase, and coenzyme A
acylating aldehyde dehydrogenase. All of these proteins
have a conserved cysteine that aligns with the catalytic
cysteine of the ALDH group.
Length = 397
Score = 29.9 bits (67), Expect = 3.7
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 424 AKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATI 483
+ + + A A LV++ P EL + + HP I + V A
Sbjct: 142 NRALALLFQAADAAHGPKILVLYVPHPSDELAEE---LLSHPKIDLIVATGGRDAVDA-- 196
Query: 484 SRGNLVYKEGNHAPA 498
K H P
Sbjct: 197 -----AVKHSPHIPV 206
>gnl|CDD|187686 cd09628, DOMON_SDR_2_like, DOMON domain of stromal cell-derived
receptor 2 (ferric chelate reductase 1) and related
proteins. Stromal cell-derived receptor 2 (or ferric
chelate reductase 1) reduces Fe(3+) to Fe(2+) ahead of
iron transport from the endosome to the cytoplasm. This
transmembrane protein is a member of the cytochrome b561
family and contains a DOMON domain which may bind to
heme or another ligand. DOMON-like domains can be found
in all three kindgoms of life and are a diverse group of
ligand binding domains that have been shown to interact
with sugars and hemes. DOMON domains were initially
thought to confer protein-protein interactions. They
were subsequently found as a heme-binding motif in
cellobiose dehydrogenase, an extracellular fungal
oxidoreductase that degrades both lignin and cellulose,
and in ethylbenzene dehydrogenase, an enzyme that aids
in the anaerobic degradation of hydrocarbons. The domain
interacts with sugars in the type 9 carbohydrate binding
modules (CBM9), which are present in a variety of
glycosyl hydrolases, and it can also be found at the
N-terminus of sensor histidine kinases.
Length = 169
Score = 28.9 bits (65), Expect = 3.9
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 297 DASSSLDLLMEAKTNGDSITVE-----TCPHYLA--FSAEEIPDGDTRFKCAPPIRDAAN 349
D S + L+ + +GDS+ E Y+A FS ++ D +C
Sbjct: 21 DPSKDCNFLVTYRVDGDSVEFELSGKTVDDGYVAVGFSDDKKMGDDDVVECVRDAGGRVE 80
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 29.6 bits (67), Expect = 4.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 13/42 (30%)
Query: 391 ISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK-LAGQVS 431
+++L V+P+ W LA+WWS RP + LA QV
Sbjct: 198 LANLLLVIPLLW------------LAAWWSLRPIEALAKQVR 227
>gnl|CDD|238635 cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a
cytoplasmic protein, shown to have magnesium dependent
DNase activity.
Length = 251
Score = 29.1 bits (66), Expect = 4.8
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159
LID H HLD P A G+ +I + + S L+L
Sbjct: 1 LIDTHCHLDFP--QFDADRDDVLARAREAGVIKIIVVGTDLK---SSKRALELA--KKYD 53
Query: 160 RIYVDVGF 167
+Y VG
Sbjct: 54 NVYAAVGL 61
>gnl|CDD|239318 cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily;
V-shaped homodimeric proteins containing a redox active
CXXC motif imbedded in a TRX fold. They function as
protein disulfide isomerases and chaperones in the
bacterial periplasm to correct non-native disulfide
bonds formed by DsbA and prevent aggregation of
incorrectly folded proteins. DsbC and DsbG are kept in
their reduced state by the cytoplasmic membrane protein
DsbD, which utilizes the TRX/TRX reductase system in the
cytosol as a source of reducing equivalents. DsbG differ
from DsbC in that it has a more limited substrate
specificity, and it may preferentially act later in the
folding process to catalyze disulfide rearrangements in
folded or partially folded proteins. Also included in
the alignment is the predicted protein TrbB, whose gene
was sequenced from the enterohemorrhagic E. coli type IV
pilus gene cluster, which is required for efficient
plasmid transfer.
Length = 197
Score = 28.8 bits (65), Expect = 5.1
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 307 EAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDM 364
E K N D +TV +PD + A I A ++ K W M G
Sbjct: 98 ELKPNADGVTVR----IFPVPILGLPDSTAK---AAAIWCAKDRAKAWTDAMSGGKVP 148
>gnl|CDD|237604 PRK14085, PRK14085, imidazolonepropionase; Provisional.
Length = 382
Score = 29.2 bits (66), Expect = 5.7
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 89 VDYGEAVIMPGLIDVHAHLDDPG-RT-EWEGFPSGTKAAAAGGITTLID 135
VD G ++PG +D H+HL G R+ E+ +G + +AGGI T +
Sbjct: 54 VDAGGRAVLPGFVDSHSHLVFAGDRSAEFAARMAG-EPYSAGGIRTTVA 101
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor
[Central intermediary metabolism, Nitrogen metabolism].
Length = 567
Score = 29.0 bits (65), Expect = 6.4
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 27/148 (18%)
Query: 92 GEAVIM-PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET- 149
GE I+ G ID H H P + + AA GITTLI T +T
Sbjct: 121 GEGKIVTAGGIDTHVHYISPQQVQ---------AALDNGITTLIGGGTGPADGTNATTCT 171
Query: 150 -----LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 204
L + AA+ + ++ GF G + +AL + AG GLK D
Sbjct: 172 PGPWYLHRMLQAADG-LPINFGFTG---KGSGSGPAALIEQIEAGACGLKVH------ED 221
Query: 205 FPMTNASHIKEGLSVLARYKRPLLVHAE 232
+ T + I LSV Y + VH +
Sbjct: 222 WGAT-PAAIDNALSVADEYDVQVAVHTD 248
Score = 29.0 bits (65), Expect = 7.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 433 GAIAIGNHADLVVWEPE 449
G+I +G ADLV+WEP
Sbjct: 422 GSIEVGKLADLVLWEPA 438
>gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase. These proteins are
amidohydrolases that are related to pfam01979.
Length = 272
Score = 28.7 bits (64), Expect = 7.8
Identities = 22/138 (15%), Positives = 35/138 (25%), Gaps = 10/138 (7%)
Query: 101 IDVHAHLDDPGRTEWEGFPSGTKA--------AAAGGITTLIDMPLNSDPSTISTETLKL 152
ID HAHL P + + + S
Sbjct: 1 IDAHAHLPGGSI-PDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANN 59
Query: 153 KVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASH 212
+V A + L P + +A+A E LG + P+ +
Sbjct: 60 RVLAEALKRPGRFVGGAALPPPDPEDAAA-ELERRLAELGFRGVRLNPHPGGGPLLDPRL 118
Query: 213 IKEGLSVLARYKRPLLVH 230
LA P+ +H
Sbjct: 119 DDPIFEALAELGLPVDLH 136
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 28.8 bits (65), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 87 QVVDYGEAVIMPGLIDVHAHL 107
+VVD ++MPGL+D H H
Sbjct: 46 EVVDARGMIVMPGLVDTHRHT 66
>gnl|CDD|219278 pfam07040, DUF1326, Protein of unknown function (DUF1326). This
family consists of several hypothetical bacterial
proteins which seem to be found exclusively in Rhizobium
and Ralstonia species. Members of this family are
typically around 210 residues in length and contain 5
highly conserved cysteine residues at their N-terminus.
The function of this family is unknown.
Length = 183
Score = 28.0 bits (63), Expect = 8.1
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 13/88 (14%)
Query: 404 YGRKYGVTLEQLASWWSE------RPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ + G AS E P + IG D EP E D
Sbjct: 83 FSGQAGGPFAVFASLVGEVLGVERAPIDFEIDGDARTVRIGGVIDAEG-EPIIEPVTGAD 141
Query: 458 HPVHMKHPSIS------AYLGRRLSGKV 479
+ P+ A + SG+
Sbjct: 142 GRARITLPNTGFETGPGATVAEAGSGRF 169
>gnl|CDD|223006 PHA03179, PHA03179, UL43 envelope protein; Provisional.
Length = 387
Score = 28.7 bits (64), Expect = 8.2
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 165 VGFWGGLV-PENAYNASALEALLNAGVLGL 193
+GF G +V P +AY AS L LL AGV GL
Sbjct: 43 LGFVGSVVLPRDAYAASPLPGLLLAGVAGL 72
>gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy
production and conversion].
Length = 575
Score = 28.6 bits (64), Expect = 9.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 65 IKEGNII--SIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+K+G I+ S VSE +V+D ++MPG +D H+H
Sbjct: 28 VKDGKIVEESEVSESK-------AKVIDASGKLVMPGGVDSHSH 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,088,890
Number of extensions: 2565724
Number of successful extensions: 2567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2395
Number of HSP's successfully gapped: 147
Length of query: 507
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 406
Effective length of database: 6,457,848
Effective search space: 2621886288
Effective search space used: 2621886288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)