RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010547
(507 letters)
>3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure
initiative, PSI-2, NEW YORK structural genomix research
CON nysgxrc; 2.60A {Bacillus halodurans}
Length = 448
Score = 509 bits (1314), Expect = e-179
Identities = 160/452 (35%), Positives = 231/452 (51%), Gaps = 26/452 (5%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ S +VT V I+ G + +I + +D + PG++DVH H
Sbjct: 10 IRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDG--PAIDGTGLHLFPGMVDVHVH 67
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
++PGRTEWEGF SG+K+ AAGG+TT DMPLNS+P TI+ E L K A ++ VD
Sbjct: 68 FNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYR 127
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
FWGGLVP N L+ L + GV+G K+FM G +DF ++ + +G+ +A
Sbjct: 128 FWGGLVPG---NIDHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAALGSI 184
Query: 227 LLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
L VHAE E + Y + RP E A+ +L A+ T
Sbjct: 185 LAVHAESNEMVNALTTIAIEEQRL----TVKDYSEARPIVSELEAVERILRFAQLT---- 236
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 343
+HI H+S L + +AK G +++VETCPHYL FS +E + KCAPP
Sbjct: 237 ---CCPIHICHVSSR-KVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAEIGYLAKCAPP 292
Query: 344 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403
+R+ E LW+ LM G ID++SSDHSP++P++K + WGGI+ Q L V +
Sbjct: 293 LRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGCQNTLAVMLT 350
Query: 404 YG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVH 461
G K + L Q+ S PAK G KG I +G A + + + L+ ++
Sbjct: 351 EGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASD-LY 409
Query: 462 MKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
+HP IS Y+G+R GKV TI +G VY++
Sbjct: 410 YRHP-ISPYVGQRFRGKVKHTICQGKHVYQDH 440
>3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain,
hydrolase, metal-binding, purine metabolism, zinc; HET:
KCX; 2.10A {Escherichia coli}
Length = 473
Score = 502 bits (1294), Expect = e-176
Identities = 155/457 (33%), Positives = 231/457 (50%), Gaps = 33/457 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
++ + +K G I +I + +V+D V+ PG++D H H+ +P
Sbjct: 31 TVILENEARVVDIAVKGGKIAAIGQDL-----GDAKEVMDASGLVVSPGMVDAHTHISEP 85
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170
GR+ WEG+ +GT+AAA GGITT+I+MPLN P+T+ +++LK DAA+ ++ +D GG
Sbjct: 86 GRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGG 145
Query: 171 LVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHIKEGLSVLARYKRP 226
LV N L L GV+G K F+ G NDF N +G L +P
Sbjct: 146 LVSY---NIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQP 202
Query: 227 LLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
+LVH E K E + Y+ +RP E AIR +L +AK
Sbjct: 203 VLVHCENALICDELGEEAKREGRV----TAHDYVASRPVFTEVEAIRRVLYLAKVA---- 254
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPP 343
G LH+ H+S ++ + A+ G IT E+CPHY ++ + T KC+PP
Sbjct: 255 ---GCRLHVCHVSSP-EGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIGTLAKCSPP 310
Query: 344 IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWS 403
IRD N++ +WE L +G ID L SDHSP PE+K GN +KAWGGI+ LQ + V +
Sbjct: 311 IRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFD 367
Query: 404 YG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
+K G++L + A + G KG IA G AD V +P + + L ND +
Sbjct: 368 EAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDD-LEY 426
Query: 463 KHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 499
+H +S Y+GR + ++ TI RG+++Y P A
Sbjct: 427 RHK-VSPYVGRTIGARITKTILRGDVIYDIEQGFPVA 462
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 442 bits (1140), Expect = e-153
Identities = 126/461 (27%), Positives = 218/461 (47%), Gaps = 28/461 (6%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
R+V+ G+ + +K+G + +I ++ S+ +D G +MPG++D H H+ D
Sbjct: 10 RLVSSDGITEADILVKDGKVAAISADTSDVEASR---TIDAGGKFVMPGVVDEHVHIIDM 66
Query: 111 GRT-EWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
+ F +++AA GGITT+I+MP + P T + + K A +R+ VD +G
Sbjct: 67 DLKNRYGRFELDSESAAVGGITTIIEMP-ITFPPTTTLDAFLEKKKQAGQRLKVDFALYG 125
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
G VP N + + +AG +G KS M S F + + E +A ++V
Sbjct: 126 GGVPGNL---PEIRKMHDAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVV 182
Query: 230 HAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
HAE E + ++ +K + Y ++P E AI+ L + K+
Sbjct: 183 HAENETIIQALQKQIKAAGGK----DMAAYEASQPVFQENEAIQRALLLQKEA------- 231
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
G L ++H+S+ ++L+ +A++ G + E+ P YL + ++ K APP+R
Sbjct: 232 GCRLIVLHVSNPDG-VELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRS 290
Query: 347 AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
A +LWE L +G ID L SDH E K + KA G L+ LP+ + G
Sbjct: 291 AEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGV 350
Query: 407 KYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464
G ++LE+L E+PAKL G KG + +G+ ADL++ + + + ++D H
Sbjct: 351 NKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQ-FRSLH 409
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
S + G ++G + T+ RG +V ++G G +
Sbjct: 410 K-YSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFV 449
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 409 bits (1054), Expect = e-140
Identities = 118/455 (25%), Positives = 194/455 (42%), Gaps = 35/455 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
IVT G+ + IK+G I I + +D + PG IDVH H++
Sbjct: 9 TIVTADGISRADLGIKDGKITQIGGAL-----GPAERTIDAAGRYVFPGGIDVHTHVETV 63
Query: 111 G--RTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
+ F + T AAA GG TT++D E + A + +D G+
Sbjct: 64 SFNTQSADTFATATVAAACGGTTTIVDFCQQD-RGHSLAEAVAKWDGMAGGKSAIDYGYH 122
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
++ LE L + G+ K FM G M + + + L + ++
Sbjct: 123 IIVLDPTDSVIEELEVLPDLGITSFKVFMAYRG---MNMIDDVTLLKTLDKAVKTGSLVM 179
Query: 229 VHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
VHAE + ++ V E T + + +RPP E A L +A+
Sbjct: 180 VHAENGDAADYLRDKFVA-EGKT----APIYHALSRPPRVEAEATARALALAEIV----- 229
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKCA 341
A ++IVH++ SL+ +M AK+ G ETC HYL + E++ D ++
Sbjct: 230 --NAPIYIVHVT-CEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFT 286
Query: 342 PPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPV 400
PP R + + LW AL +G + +SSDH K +F G ++ L +
Sbjct: 287 PPARAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMM 346
Query: 401 TWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHP 459
+ + ++L Q + RPAK+ G KG IA+G+ AD+V+W+PEAE ++
Sbjct: 347 VYQGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTA- 405
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+H S+Y G ++ G + RG ++ EG+
Sbjct: 406 MHNAMD-YSSYEGHKVKGVPKTVLLRGKVIVDEGS 439
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 395 bits (1018), Expect = e-134
Identities = 120/457 (26%), Positives = 205/457 (44%), Gaps = 36/457 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+VT V I +++I S+ +V+D ++PG ID H HLD P
Sbjct: 9 TVVTASDTYQADVLIDGEKVVAIGSDLQAT----DAEVIDATGYYLLPGGIDPHTHLDMP 64
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F +GTKAAA GG T+++D L S + + A + +D GF
Sbjct: 65 FGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTS-KGESLHSAIATWHEKARGKAVIDYGFH 123
Query: 169 GGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ N + LE+++N G+ LK FM M + + + L +
Sbjct: 124 LMVSDANDHVLEELESVVNNEGITSLKVFMAYKN---VLMADDETLFKTLIRAKELGALV 180
Query: 228 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
VHAE ++ +++ + E +T + TRPP E A + +
Sbjct: 181 QVHAENGDVLDYLTKQALA-EGNT----DPIYHAYTRPPEAEGEATGRAIALTALA---- 231
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD---TRFKC 340
A L++VH+S + ++ + EA+ G ++ ETCP YL + D ++
Sbjct: 232 ---DAQLYVVHVS-CADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFEGAKYVW 287
Query: 341 APPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLP 399
+PP+R+ N++ LW AL +G + + SDH P K L +F K G ++ +
Sbjct: 288 SPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMT 347
Query: 400 VTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDND 457
+ +S G RK ++L Q S + AKL G KG IA+G+ AD+V+++P + + +
Sbjct: 348 ILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVE 407
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
HM + + G ++ G V++ +SRG V +
Sbjct: 408 T-HHMNVD-YNPFEGMQVHGDVISVLSRGAFVVRNKQ 442
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 391 bits (1008), Expect = e-133
Identities = 113/449 (25%), Positives = 185/449 (41%), Gaps = 30/449 (6%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDD 109
I G+V I I I+ E ++ + +V++ + PG ID H +
Sbjct: 12 LITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFRE 71
Query: 110 PGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWG 169
PG T S ++AA AGG+T+ +DMP N++P T E L K + + GF+
Sbjct: 72 PGLTHKATIASESRAAVAGGVTSFMDMP-NTNPPTTMWERLLEKRQIGADTAWANYGFFF 130
Query: 170 GLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLV 229
G +N ++ + V GLK F+ S N + + + +
Sbjct: 131 GGTNDNI---DEIKRVDKHLVPGLKLFLGSSTGN----MLVDNKETLEKIFGECDLLIAT 183
Query: 230 HAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPA 285
H E + E + + LD + R + E + +A+
Sbjct: 184 HCEKEEIIRANKEHYKAKYGNDLDIHFHPLI---RSEEACYRSSAEAVELAERM------ 234
Query: 286 EGAHLHIVHLSDASSSLDLL-MEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPI 344
A LHI+HLS L L + T IT E C H+L FS + R K P I
Sbjct: 235 -NARLHILHLSTEKE-LSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAI 292
Query: 345 RDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSY 404
+ +++E L A+ +G ID++++DH+P + K EG+ L+A G +Q L
Sbjct: 293 KKESDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLEL 349
Query: 405 GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKH 464
+ ++E++ S + PA L +G I G +ADLV+ +P + + D+ +
Sbjct: 350 CNQGIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADN-ILSLC 408
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKEG 493
S + G S V T G L Y +G
Sbjct: 409 -GWSPFEGFTFSHSVAYTFVNGCLAYAKG 436
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 390 bits (1004), Expect = e-131
Identities = 102/455 (22%), Positives = 179/455 (39%), Gaps = 26/455 (5%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTG-QVVDYGEAVIMPGLIDVHAHLDD 109
R+V V +++G + ++ + P + G +V+D +++PG ID H H+
Sbjct: 35 RVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQF 94
Query: 110 P--GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167
P G + F GTKAA +GG T +ID + ++ E + A+ ++ D
Sbjct: 95 PFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSL-IEAFETWRSWADPKVCCDYSL 153
Query: 168 WGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
+ + ++ L+ + GV K FM D M + E S
Sbjct: 154 HVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYK---DLYMVTDLELYEAFSRCKEIGAI 210
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
VHAE K T + RP + E A +T+A
Sbjct: 211 AQVHAENGDLIAEGAKKMLALGIT-GPEGHELCRPEAVEAEATLRAITIASAV------- 262
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKCAP 342
L+IVH+ + S+ ++ +A+ +G + E L + + P
Sbjct: 263 NCPLYIVHVM-SKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGP 321
Query: 343 PIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT 401
P+R D + + L L + + +D+ K L + +F K G++ ++ + V
Sbjct: 322 PLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVI 381
Query: 402 WSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
W G G + + + S AK+ KG IA+G+ AD+V+W+P+ +
Sbjct: 382 WEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKT- 440
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G G L TISRG +VY+ G
Sbjct: 441 HHQAVN-FNIFEGMVCHGVPLVTISRGKVVYEAGV 474
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 386 bits (995), Expect = e-131
Identities = 108/466 (23%), Positives = 189/466 (40%), Gaps = 34/466 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
I+T + + I I + P ++ V+D + PG ID H H+ P
Sbjct: 8 EIITADSRYKADIYAEGETITRIGQNLEAPPGTE---VIDATGKYVFPGFIDPHVHIYLP 64
Query: 111 GRTEW--EGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
+ + +G+KAA GG TT I+M + + E +L AE Y D F
Sbjct: 65 FMATFAKDTHETGSKAALMGGTTTYIEMCCP-SRNDDALEGYQLWKSKAEGNSYCDYTFH 123
Query: 169 GGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLL 228
+ + L ++ G+ K F+ F + + + L + +
Sbjct: 124 MAVSKFDEKTEGQLREIVADGISSFKIFLSYKN---FFGVDDGEMYQTLRLAKELGVIVT 180
Query: 229 VHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
H E + + ++ + E T + +RP + E T + T
Sbjct: 181 AHCENAELVGRLQQKLLS-EGKT----GPEWHEPSRPEAVEAEGTARFATFLETT----- 230
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDT---RFKCA 341
GA ++VHLS +LD M AK G I +E+ + G ++ +
Sbjct: 231 --GATGYVVHLS-CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMS 287
Query: 342 PPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT 401
PP+RD N++ LW+AL G ID + +DH P E KLL + F GI +++ + +
Sbjct: 288 PPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLL 347
Query: 402 WSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
++YG + + + + S + AKL G KG IA+G+ ADLVV++P+ +
Sbjct: 348 YTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKT- 406
Query: 460 VHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
H+ + + + G + G+ RG + ++G G +
Sbjct: 407 QHVNND-YNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLL 451
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 385 bits (992), Expect = e-130
Identities = 113/468 (24%), Positives = 191/468 (40%), Gaps = 40/468 (8%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
IVT V+++ G I+ I N + +D +MPG ID H HL+ P
Sbjct: 9 TIVTADLTYKADVKVEGGRIVEIGP------NLSGAETLDATGCYVMPGGIDPHTHLEMP 62
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F SGT+AA AGG T ++D L S P E L + + + + D F
Sbjct: 63 FMGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMWDNKSTRA-NCDYSFH 120
Query: 169 GGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ + +E ++ + G+ K FM G M + + A
Sbjct: 121 MAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGA---LMVDDDEMFSSFQRCAALGALP 177
Query: 228 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
LVHAE + + + + E ++ + +RP E A + +A
Sbjct: 178 LVHAENGDVVAQLQAKLLA-EGNS----GPEAHAYSRPAEVEGEAANRAIMIADMA---- 228
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFK 339
G ++IVH S + + + A+ G + E +L E D D R
Sbjct: 229 ---GCPVYIVHTS-CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRV 284
Query: 340 CAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399
+PP R+ +++ LW L G + ++++DH E K G+F + G L+ +P
Sbjct: 285 MSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMP 344
Query: 400 VTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ W+YG G +T+ + + S AK+ KGAI +G ADLVVW+P+ +
Sbjct: 345 MLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAK 404
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
+ + G+ ++G T++RG + +EG G +
Sbjct: 405 T-QQSAID-YNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFV 450
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 380 bits (977), Expect = e-127
Identities = 104/458 (22%), Positives = 175/458 (38%), Gaps = 36/458 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-- 108
+IV + +++G I I P K ++ +++PG IDVH
Sbjct: 34 KIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVK---TIEAHSRMVIPGGIDVHTRFQMP 90
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
D G T + F GTKAA AGG T +ID + +P T + A+ + D
Sbjct: 91 DQGMTSADDFFQGTKAALAGGTTMIIDHVVP-EPGTSLLAAFDQWREWADSKSCCDYSLH 149
Query: 169 GGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ + +EAL+ + GV +M D I E LSV+
Sbjct: 150 VDISEWHKGIQEEMEALVKDHGVNSFLVYMAFK---DRFQLTDCQIYEVLSVIRDIGAIA 206
Query: 228 LVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDG 283
VHAE + + +R + L ++ +RP E A+ +T+A T
Sbjct: 207 QVHAENGDIIAEEQQRILDLGIT-----GPEGHVLSRPEEVEAEAVNRAITIANQT---- 257
Query: 284 PAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFK 339
L+I + + SS +++ +A+ G + E L + F
Sbjct: 258 ---NCPLYITKVM-SKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFV 313
Query: 340 CAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVL 398
+PP+ D + L L G + + S H K + + NF G + + +
Sbjct: 314 TSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERM 373
Query: 399 PVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDN 456
V W G + Q + S AK+ KG IA+G+ ADLV+W+P++ +
Sbjct: 374 SVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISA 433
Query: 457 DHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ + + G G L IS+G +V ++G
Sbjct: 434 KT-HNSSLE-YNIFEGMECRGSPLVVISQGKIVLEDGT 469
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 376 bits (968), Expect = e-126
Identities = 96/457 (21%), Positives = 172/457 (37%), Gaps = 34/457 (7%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+V V ++ G I I + + +VVD + +++PG ID H H P
Sbjct: 16 TVVNDDRYFKSDVLVENGIIKEISKNIEPK---EGIKVVDATDKLLLPGGIDTHTHFQLP 72
Query: 111 --GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
G + F GT+AA AGG T +ID + E A++++ D
Sbjct: 73 FMGTVSVDDFDIGTQAAVAGGTTFIIDFVIP-TRGQSLLEAYDQWKKWADEKVNCDYSLH 131
Query: 169 GGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
+ + + +E L+ GV K FM M +
Sbjct: 132 VAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSF---MVTDQEMYHIFKRCKELGAIA 188
Query: 228 LVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGP 284
VHAE M ++ + T + +RP + E A + +A
Sbjct: 189 QVHAENGDMVFEGQKKMLEMGIT----GPEGHELSRPEALEAEATNRAIVIADSV----- 239
Query: 285 AEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD----TRFKC 340
++IVH+ + + D++ + + G + E L + + D F
Sbjct: 240 --CTPVYIVHVQ-SIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVM 296
Query: 341 APPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLP 399
PPIR D K L + L G +D + +D+ + K + + +F K G++ ++ +
Sbjct: 297 GPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMS 356
Query: 400 VTWSYG-RKYGVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ W G +T Q S A++ KG I +G D+V+W+P + D
Sbjct: 357 IVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKD 416
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 494
H + + G +++G + TI GN+V+ +
Sbjct: 417 T-HHHAVD-FNIFEGIKVTGIAVTTIVAGNIVWSDNK 451
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 342 bits (880), Expect = e-112
Identities = 111/528 (21%), Positives = 192/528 (36%), Gaps = 95/528 (17%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
I T + + + + G + I + D S+ V+D A I PG ID H H+D+P
Sbjct: 11 IICTASDIYAAEIAVNNGKVQLIAASIDPSLGSE---VIDAEGAFITPGGIDAHVHVDEP 67
Query: 111 GRTEWEG---FPSGTKAAAAGGITTLIDMPLN----SDPSTISTETLKLKVDAAEKRIYV 163
+ + T++A AGG TT++ PS ++ + +E+ +Y
Sbjct: 68 LKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYC 127
Query: 164 DVGFWGGLVPENAYNASALE--------ALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 215
D G L + A E A + GV +K FM G+ + I
Sbjct: 128 DYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL----QISDYDIMS 183
Query: 216 GLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
+ + ++HAE ++ E + + T + +RP E A
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEE-QGLT----DAYYHGVSRPSIVEGEATNR 238
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-- 329
+T+A + VH+S + + +++ +A+T G + ETCP Y S
Sbjct: 239 AITLATTM-------DTPILFVHVS-SPQAAEVIKQAQTKGLKVYAETCPQYALLSDAIT 290
Query: 330 ----------------------------EIPDGDTRFKCAPPIRDAANKEKLWEALMDGH 361
+ +++ C+PPIR ++ +W+ + +G
Sbjct: 291 RCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGT 350
Query: 362 IDMLSSDHSPTVPELK-------------LLDEGNFLKAWGGISSLQFVLPVTWSYGRKY 408
++ SDH K G F G+ + +P+ + YG
Sbjct: 351 FTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLR 410
Query: 409 G--VTLEQLASWWSERPAKLAG-QVSKGAIAIGN-HADLVVWEPEAEFELDNDHPV---- 460
G ++ +L PAK+ G KG+I G ADLV+W P+ + N P
Sbjct: 411 GNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITN 470
Query: 461 ---HMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN-HAPAACGSPI 504
+ + G + TI +G +VYKEG A G +
Sbjct: 471 KLMEHNCD-YTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYL 517
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 249 bits (639), Expect = 5e-78
Identities = 107/465 (23%), Positives = 193/465 (41%), Gaps = 71/465 (15%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+++ + + I I I + ++D + PG +DVH HL +P
Sbjct: 8 KVLQNGELQQADILIDGKVIKQIAPAIEPSNGV---DIIDAKGHFVSPGFVDVHVHLREP 64
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV----- 165
G E +GTKAAA GG TT+ MP N+ P S E + + V V
Sbjct: 65 GGEYKETIETGTKAAARGGFTTVCPMP-NTRPVPDSVEHFEALQKLIDDNAQVRVLPYAS 123
Query: 166 ---GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSVLA 221
G + + AL+ G +D + AS + EG+ A
Sbjct: 124 ITTRQLGKELVD-------FPALVKEGAFAFT--------DDGVGVQTASMMYEGMIEAA 168
Query: 222 RYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEEAAI-REL 272
+ + ++ H E D++L RS + P E I R++
Sbjct: 169 KVNKAIVAHCE------------DNSLIYGGAMHEGKRSKELGIPGIPNICESVQIARDV 216
Query: 273 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332
L +A+ G H H+ H+S S + ++ +AK G +T E PH+L + ++IP
Sbjct: 217 L-LAEAA-------GCHYHVCHVSTKES-VRVIRDAKRAGIHVTAEVTPHHLLLTEDDIP 267
Query: 333 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 392
+ +K PP+R ++E L E L+DG ID +++DH+P + K KA GI
Sbjct: 268 GNNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQP---MEKAPFGIV 324
Query: 393 SLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
+ P+ +++ + TL+QL + + +P + + G + +ADL + + ++E
Sbjct: 325 GSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFN-LEYGTLKENGYADLTIIDLDSE 383
Query: 452 FELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 493
E+ + S + ++G ++ G + T+ G + ++
Sbjct: 384 QEIKGE-----DFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGD 423
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 248 bits (635), Expect = 2e-77
Identities = 119/473 (25%), Positives = 202/473 (42%), Gaps = 73/473 (15%)
Query: 45 YWLTSKRIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y + R + +G I + +++G I + + +V+D +I PGL+DV
Sbjct: 3 YLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT----ADNAEVIDVNGKLIAPGLVDV 58
Query: 104 HAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYV 163
H HL +PG E +GT AAA GG TT+ MP N+ P E ++ + +++ +V
Sbjct: 59 HVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRIKEKAHV 117
Query: 164 DV--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIK 214
+V G + + E L G +D + +AS +
Sbjct: 118 NVLPYGAITVRQAGSEMTD-------FETLKELGAFAFT--------DDGVGVQDASMML 162
Query: 215 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTL--------DTRSYSTYLKTRPPSWEE 266
+ A+ ++ H E ++TL S L P E
Sbjct: 163 AAMKRAAKLNMAVVAHCE------------ENTLINKGCVHEGKFSEKHGLNGIPSVCES 210
Query: 267 AAI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325
I R++L +A+ H H+ H+S S + ++ +AK G +T E PH+L
Sbjct: 211 VHIARDIL-LAEAA-------DCHYHVCHVSTKGS-VRVIRDAKRAGIKVTAEVTPHHLV 261
Query: 326 FSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFL 385
++IP D FK PP+R + E L E L+DG IDM+++DH+P E K
Sbjct: 262 LCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQG---IE 318
Query: 386 KAWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLV 444
+A GI+ + P+ ++ +K +TLEQL + +E+PA G + G + G AD+
Sbjct: 319 RAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRTADIT 377
Query: 445 VWEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEGN 494
+ + E E E+D S + G + G + TI G + +++ +
Sbjct: 378 IIDLEQEEEIDPT-----TFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 246 bits (631), Expect = 3e-76
Identities = 121/464 (26%), Positives = 207/464 (44%), Gaps = 73/464 (15%)
Query: 51 RIVTPKGVIS--GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
++ P + + ++ G I I +++D ++ PG ID+H HL
Sbjct: 55 YVIDPSQNLEGEFDILVENGKIKKIDKNIL----VPEAEIIDAKGLIVCPGFIDIHVHLR 110
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDV--- 165
DPG+T E SG++ A AGG TT++ MP N++P +T + + ++ V
Sbjct: 111 DPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKSKSVGLCRVLPT 169
Query: 166 -----GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEGLSV 219
G G + + +L AG + +D P+ ++S +++ L +
Sbjct: 170 GTITKGRKGKEIAD-------FYSLKEAGCVAFT--------DDGSPVMDSSVMRKALEL 214
Query: 220 LARYKRPLLVHAEMEKGSERHVKLEDDTL-------DTRSYSTYLKTRPPSWEEAAI-RE 271
++ P++ H E DD L S L +R P EE I R+
Sbjct: 215 ASQLGVPIMDHCE------------DDKLAYGVINEGEVSALLGLSSRAPEAEEIQIARD 262
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331
+ +A+ T G H+HI H+S S L+++ K G IT E P++L F+ E+
Sbjct: 263 GI-LAQRT-------GGHVHIQHVSTKLS-LEIIEFFKEKGVKITCEVNPNHLLFTEREV 313
Query: 332 PDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGI 391
+ + PP+R ++ L E + G ID ++DH+P K L A GI
Sbjct: 314 LNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKEL----VEFAMPGI 369
Query: 392 SSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 451
LQ LP RK ++L++L ++ PA++ G V G + +G+ AD+ +++P E
Sbjct: 370 IGLQTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADITIFDPNKE 428
Query: 452 FELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKE 492
+ L+ + + S S G+ L GKV+ TI G +VYK+
Sbjct: 429 WILNEE-----TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding,
pyrimidine biosynthesis, structural genomics, NPPSFA;
2.42A {Thermus thermophilus}
Length = 426
Score = 238 bits (610), Expect = 1e-73
Identities = 127/471 (26%), Positives = 195/471 (41%), Gaps = 71/471 (15%)
Query: 46 WLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVH 104
+ + R+V +G V I EG I+S+ E QVVD + PG +D+H
Sbjct: 3 LIRNVRLVDARGERGPADVLIGEGRILSLEGGEA-------KQVVDGTGCFLAPGFLDLH 55
Query: 105 AHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVD 164
AHL +PG E SG AA GG T L+ MP N+ P + E ++ + A+
Sbjct: 56 AHLREPGEEVKEDLFSGLLAAVRGGYTDLVSMP-NTKPPVDTPEAVRALKEKAKALGLAR 114
Query: 165 V--------GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKE 215
+ G + L AG + L +D +A +
Sbjct: 115 LHPAAALTEKQEGKTLTP-------AGLLREAGAVLLT--------DDGRTNEDAGVLAA 159
Query: 216 GLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTR------SYSTY--LKTRPPSWEEA 267
GL + A P+ VHAE D L + L PP E A
Sbjct: 160 GLLMAAPLGLPVAVHAE------------DAGLRRNGVMNDGPLADLLGLPGNPPEAEAA 207
Query: 268 AI-RELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAF 326
I R+L + R LH+ HLS L+L+ EAK G +T E PH+L
Sbjct: 208 RIARDLEVLRYALRR--SPATPRLHVQHLSTKRG-LELVREAKRAGLPVTAEATPHHLTL 264
Query: 327 SAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLK 386
+ E + D FK APP+R ++E L E L+DG +D +++DH+P K D L+
Sbjct: 265 TEEALRTFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKD---LLR 321
Query: 387 AWGGISSLQFVLPVTWSY-GRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVV 445
A GI SL+ P+ ++ K G L++L +++ P ++ G + + G A LV+
Sbjct: 322 APFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEEGAEASLVL 380
Query: 446 WEPEAEFELDNDHPVHMKHPSISA---YLGRRLSGKVLATISRGNLVYKEG 493
P+ E +D S + + G L G + T+ G +V++
Sbjct: 381 LSPK-ERPVDPS-----AFASKARYSPWAGWVLGGWPVLTLVAGRIVHEAL 425
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 122 bits (307), Expect = 1e-30
Identities = 61/448 (13%), Positives = 127/448 (28%), Gaps = 87/448 (19%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+ P+ V + G II++ S VVD ++ PG ID H HL
Sbjct: 16 HLYAPEDRGICDVLVANGKIIAVASNIPSD-IVPNCTVVDLSGQILCPGFIDQHVHLIGG 74
Query: 111 GRTEWEGFPSGTKAAAA---GGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGF 167
G + A + G+T+++ + +D + E+L K A +
Sbjct: 75 GGEAGPTTRTPEVALSRLTEAGVTSVVGLL-GTDSISRHPESLLAKTRALNEEGISAWML 133
Query: 168 WGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPL 227
G + ++E + + + + A + ++ A +
Sbjct: 134 TGAYHVPSRTITGSVEKDVAI----IDRVIGVKCAISDHRSAAPDVYHLANMAAESRVGG 189
Query: 228 LVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEG 287
L+ K + D + A++ + + ++
Sbjct: 190 LLG---GKPGVTVFHMGD-------------------SKKALQPIYDLLENCDV----PI 223
Query: 288 AHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 347
+ L H++ + +E G +I + + P+ A
Sbjct: 224 SKLLPTHVNRNVPLFEQALEFARKGGTIDITS-------------------SIDEPVAPA 264
Query: 348 -ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
+ + + + S + + G++ + +L +
Sbjct: 265 EGIARAVQAGIPLARVTLSSDGNGSQP-----FFDDEGNLTHIGVAGFETLLETVQVLVK 319
Query: 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPS 466
Y ++ + A KG I GN ADL+V PE
Sbjct: 320 DYDFSISDALRPLTSSVAGFLNLTGKGEILPGNDADLLVMTPELR--------------- 364
Query: 467 ISAYLGRRLSGKVLATISRGNLVYKEGN 494
+ +RG L+ K+G
Sbjct: 365 ------------IEQVYARGKLMVKDGK 380
>2vun_A Enamidase; nicotinate degradation, binuclear metal center,
amidohydrolases, stereospecificity, hydrolase; 1.89A
{Eubacterium barkeri}
Length = 386
Score = 104 bits (260), Expect = 1e-24
Identities = 57/468 (12%), Positives = 120/468 (25%), Gaps = 106/468 (22%)
Query: 51 RIVTPKG----VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+IV+ + + + +++G I +I EE ++D + + PGL+D H H
Sbjct: 11 KIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDA-TIIDAAGSTVTPGLLDTHVH 69
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS----TETLKLKVDAAEKRIY 162
+ + +A GG+TT+I P K K Y
Sbjct: 70 VSGGDYAPRQKTMDFISSALHGGVTTMISAG---SPHFPGRPKDAAGTKALAITLSKSYY 126
Query: 163 VDV-----GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGL 217
G ++ E + GV + I + +
Sbjct: 127 NARPAGVKVHGGAVILEKGLTEEDFIEMKKEGVWIVGEVG-LGTIKNPED-----AAPMV 180
Query: 218 SVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAK 277
++ + +H DD + T+ P +++E+ +
Sbjct: 181 EWAHKHGFKVQMHTGGTSIPGSSTVTADDVIKTKPDVVSHINGGP--TAISVQEVDRIMD 238
Query: 278 DTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337
+T + IV + + + A G + F +
Sbjct: 239 ET-------DFAMEIVQCGNPKIADYVARRAAEKG-------QLGRVIFGNDAPSGTG-- 282
Query: 338 FKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 397
+ G + ++
Sbjct: 283 ------------------LIPLGILRN----------MCQIA------------------ 296
Query: 398 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDND 457
+ E + + G ++ G IA G ADL++ +D
Sbjct: 297 --------SMSDIDPEVAVCMATGNSTAVYG-LNTGVIAPGKEADLII--------MDTP 339
Query: 458 HPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPIL 505
+ + G + + G V + + P A + +
Sbjct: 340 LGSVAEDAMGAIAAGDIPG--ISVVLIDGEAVVTKSRNTPPAKRAAKI 385
>4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel,
acetohydroxamic acid, metalloenzyme, hydrolase; HET:
KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1
c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C*
Length = 570
Score = 100 bits (251), Expect = 8e-23
Identities = 82/448 (18%), Positives = 143/448 (31%), Gaps = 77/448 (17%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------M 97
LT+ I+ G+ + +K+G I+ I D +V VI
Sbjct: 71 LTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVT 130
Query: 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------LK 151
G ID H H + P A A GITTL + +T ++
Sbjct: 131 AGGIDTHVHFIN---------PDQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIE 181
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 211
+ + E + ++VG G + + + + ++AG GLK D+ T A
Sbjct: 182 KMLKSTE-GLPINVGILGKG---HGSSIAPIMEQIDAGAAGLKIHE------DWGATPA- 230
Query: 212 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
I L+V + +H++ + +DTL + E A
Sbjct: 231 SIDRSLTVADEADVQVAIHSD----TLNEAGFLEDTLRAINGRV---IHSFHVEGAGGGH 283
Query: 272 LLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAE-- 329
+ G + ++ + + E +
Sbjct: 284 APDIMAMA-------GHPNVLPSSTNP---------TRPFTVNTIDEHLDMLMVCHHLKQ 327
Query: 330 EIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWG 389
IP+ D F + + E + L G I M+S+D + E L+ W
Sbjct: 328 NIPE-DVAFADSRIRPETIAAEDILHDL--GIISMMSTDALA----MGRAGE-MVLRTWQ 379
Query: 390 GISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWE 447
++ L++ S ++ PA G G+I G ADLV+WE
Sbjct: 380 TADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWE 439
Query: 448 PE-----AEFELDNDHPVH--MKHPSIS 468
P+ A+ + + + PS S
Sbjct: 440 PKFFGVKADRVIKGGIIAYAQIGDPSAS 467
>2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex,
amidohydrolase, structural genomics, PSI, protein
structure initiative; HET: KCX ADE; 2.30A {Enterococcus
faecalis} SCOP: b.92.1.8 c.1.9.14
Length = 379
Score = 93.7 bits (232), Expect = 6e-21
Identities = 74/458 (16%), Positives = 131/458 (28%), Gaps = 106/458 (23%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDP 110
+ V + IKE I ++ + + + G ID H H +
Sbjct: 13 QTVNGM---PVEIAIKEKKIAAVAATISGSAKE---TIHLEPGTYVSAGWIDDHVHCFEK 66
Query: 111 GRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGG 170
++ + G+TT+ID + I + V++ WG
Sbjct: 67 MALYYD---YPDEIGVKKGVTTVIDAG-TTGAENIHEFYDLAQQAKTNVFGLVNISKWGI 122
Query: 171 LVPENAYNASALEALLNA--------GVLGLKSFMCPSGINDFPMTNASHIKEGLSVLAR 222
+ + + S ++A L V+G+K+ M + I D +T K+
Sbjct: 123 VAQDELADLSKVQASLVKKAIQELPDFVVGIKARMSRTVIGDNGITPLELAKQI--QQEN 180
Query: 223 YKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTD 282
+ PL+VH + PP +E I L+ K
Sbjct: 181 QEIPLMVHIG--------------------------SAPPHLDE--ILALM--EKGDVLT 210
Query: 283 GPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAP 342
G I+ + D +A G + + +F+
Sbjct: 211 HCFNGKENGILDQATD-KIKDFAWQAYNKG--VVFDIGHGTDSFNFHVA----------- 256
Query: 343 PIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTW 402
AL +G D + G + L T
Sbjct: 257 -----------ETALREG-----------MKAASISTDIYIRNRENGPVYD----LATTM 290
Query: 403 SYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHM 462
R G ++ ++ PA+ KG + IG ADL ++ +AE + D
Sbjct: 291 EKLRVVGYDWPEIIEKVTKAPAENFHLTQKGTLEIGKDADLTIFTIQAEEKTLTD----- 345
Query: 463 KHPSISAYLGRRLSG----KVLATISRGNLVYKEGNHA 496
G + + TI G + EG+H
Sbjct: 346 -------SNGLTRVAKEQIRPIKTIIGGQIYDNEGHHH 376
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 91.6 bits (227), Expect = 9e-20
Identities = 86/431 (19%), Positives = 135/431 (31%), Gaps = 88/431 (20%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEE--DWPRNSKTGQVVDYGEAVI-------M 97
+T+ IV G+ + IK+G I I D K V +
Sbjct: 70 ITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVT 129
Query: 98 PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST------ETLK 151
G ID H H P A A G+TT+I T +T LK
Sbjct: 130 AGGIDTHIHFIS---------PQQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLK 180
Query: 152 LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNAS 211
+ AAE+ +++GF NA N ++L + AG +G K D+ T S
Sbjct: 181 WMLRAAEE-YSMNLGFLA---KGNASNDASLADQIEAGAIGFKIHE------DWG-TTPS 229
Query: 212 HIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRE 271
I L V +Y + +H DTL+ EA E
Sbjct: 230 AINHALDVADKYDVQVAIH--------------TDTLN----------------EAGCVE 259
Query: 272 LLTVAKDTR------TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLA 325
A R T+G G I+ ++ + L T ++ E +
Sbjct: 260 DTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPAS-TNPTIPFTVNTEAEHMDML 318
Query: 326 FSAE----EIPDGDTRFKCAPPIRD-AANKEKLWEALMDGHIDMLSSDHSPTVPELKLLD 380
I + D +F + A ++ L + G + SSD
Sbjct: 319 MVCHHKDKSIKE-DVQFADSRIRPQTIAAEDTLHD---MGAFSITSSDSQA-----MGRV 369
Query: 381 EGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVS-KGAIAIG 438
+ W + +++ S ++ PA G G++ +G
Sbjct: 370 GEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVG 429
Query: 439 NHADLVVWEPE 449
ADLV+W P
Sbjct: 430 KVADLVLWSPA 440
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2
PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C*
1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C*
1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C
...
Length = 567
Score = 80.1 bits (197), Expect = 4e-16
Identities = 81/422 (19%), Positives = 138/422 (32%), Gaps = 72/422 (17%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI-------MPG 99
LT+ IV G++ + +K+G I +I + + VI G
Sbjct: 70 LTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAG 129
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLID---MPLNSDPSTISTE--TLKLKV 154
ID H H P + E A G+TT++ P +T T ++
Sbjct: 130 GIDTHIHWICPQQAEE---------ALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRM 180
Query: 155 DAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK 214
A + V++G G N AL + AGV+GLK + I
Sbjct: 181 LQAADSLPVNIGLLGKG---NVSQPDALREQVAAGVIGLKIHEDWGATP-------AAID 230
Query: 215 EGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 274
L+V + +H++ + +DTL T +++T
Sbjct: 231 CALTVADEMDIQVALHSD----TLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDIIT 286
Query: 275 VAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDG 334
P L +++D ++ C H AE++
Sbjct: 287 ACAH-----PNILPSSTNPTLPYTLNTIDEHLDMLM--------VCHHLDPDIAEDVAFA 333
Query: 335 DTRFKCAPPIRDAANKEKLWEALMD-GHIDMLSSDHSP--TVPELKL--LDEGNFLKAWG 389
++R + + L D G + SSD V E+ L + +K
Sbjct: 334 ESRIRRETIAA--------EDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQR 385
Query: 390 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK--GAIAIGNHADLVVWE 447
G L G +++ + ++ PA G ++ G+I +G ADLVVW
Sbjct: 386 GA------LAEE--TGDNDNFRVKRYIAKYTINPALTHG-IAHEVGSIEVGKLADLVVWS 436
Query: 448 PE 449
P
Sbjct: 437 PA 438
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 73.6 bits (180), Expect = 3e-14
Identities = 67/460 (14%), Positives = 130/460 (28%), Gaps = 98/460 (21%)
Query: 51 RIVTPKGVISGAVE----IKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ V S + +G I ++ S P + Q +D A I PG +D+H H
Sbjct: 23 KPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPAD---TQRIDAKGAFISPGWVDLHVH 79
Query: 107 LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVG 166
+ G + ++ A G+TTL+D + + + ++ + +RI
Sbjct: 80 IWHGGT---DISIRPSECGAERGVTTLVDAGSAGEANF--HGFREYIIEPSRERIK---- 130
Query: 167 FWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRP 226
A LN G +GL + + D + I E + + +
Sbjct: 131 -----------------AFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVG 173
Query: 227 LLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAE 286
L V A SW ++ +AK
Sbjct: 174 LKVRAS-------------------------HVITGSWGVTPVKLGKKIAKIL------- 201
Query: 287 GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRD 346
+ VH+ + + D ++E GD +T H + D
Sbjct: 202 KVPMM-VHVGEPPALYDEVLEILGPGDVVT-----HCFNGKSGSSIMEDEDLFNL----- 250
Query: 347 AANKEKLWEALMDG-HIDMLSSDHSPTVPELKLLDEGNFL-------KAWGGISSLQFVL 398
+G +D+ S + + L ++ + L
Sbjct: 251 ------AERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDL 304
Query: 399 PVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDH 458
T S + E + + PA + + + +G AD V++ D
Sbjct: 305 ATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLV-------DA 357
Query: 459 PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPA 498
+ + +RL + + + A
Sbjct: 358 DLEATDSNGDVSRLKRL-FEPRYAVIGAEAIAASRYIPRA 396
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 67.6 bits (166), Expect = 2e-12
Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 45 YWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y LT RI T + AV I +G I S+ + P + A++ PG IDV
Sbjct: 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPE---IEQRSLNGAILSPGFIDV 58
Query: 104 HAH-------LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTI--STETLKLKV 154
+ D E KA G T + P+ I S E +K V
Sbjct: 59 QLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYL-------PTLITTSDELMKQGV 111
Query: 155 DAAEK 159
+
Sbjct: 112 RVMRE 116
Score = 36.0 bits (84), Expect = 0.023
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 28/85 (32%)
Query: 409 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467
G+ L+++ + PA+ G + G +A G A+L D
Sbjct: 325 GIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTA--------FTPD---------- 366
Query: 468 SAYLGRRLSGKVLATISRGNLVYKE 492
K+ TI GN V +
Sbjct: 367 ---------FKITKTIVNGNEVVTQ 382
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 60.7 bits (148), Expect = 3e-10
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 45 YWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
Y LT+ +I T V+ AV I I ++ E P VVD A + PG ID+
Sbjct: 5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSE---MNVVDLNGANLSPGFIDL 61
Query: 104 HAH----LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 146
+ + E + KA G T+ + P+ I+
Sbjct: 62 QLNGCGGVMFNDEITAETIDTMHKANLKSGCTSFL-------PTLIT 101
Score = 31.8 bits (73), Expect = 0.46
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 28/83 (33%)
Query: 409 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467
G+ L++ + PAK G G I G A+L V D D
Sbjct: 325 GIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTV--------FDRD---------- 366
Query: 468 SAYLGRRLSGKVLATISRGNLVY 490
V AT+ G
Sbjct: 367 ---------FNVKATVVNGQYEQ 380
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 60.5 bits (146), Expect = 4e-10
Identities = 52/336 (15%), Positives = 98/336 (29%), Gaps = 60/336 (17%)
Query: 102 DVHAHLDDPGRTEWEGFP-SGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKR 160
D H HL R +G + I MP N P + E A +R
Sbjct: 14 DWHLHL----R---DGDMLKTVVPYTSEIYGRAIVMP-NLAPPVTTVE----AAVAYRQR 61
Query: 161 I------YVDVGFWGGLVPENAYNASALEALLNAG-VLGLKSFMCPS-GINDFPMTNASH 212
I D ++ + + LE N G K + + + +T+
Sbjct: 62 ILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATANSSHGVTSVDA 121
Query: 213 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 272
I L + + PLLVH E+ E ++ +
Sbjct: 122 IMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIE--------------------SVM 161
Query: 273 LTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIP 332
+ + + H++ + D + + + P +L F+ +
Sbjct: 162 EPLRQR------LTALKVVFEHITTKDA-ADYVRDGNER---LAATITPQHLMFNRNHML 211
Query: 333 DGDTR--FKCAPPIRDAANKEKLWEALMDGHID-MLSSDHSPTVPELKLLDEGNFLKAWG 389
G R C P ++ +++ L E + G L +D +P K G
Sbjct: 212 VGGVRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCA----- 266
Query: 390 GISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAK 425
G + L + + L+ ++ S +
Sbjct: 267 GCFNAPTALGSYATVFEEMN-ALQHFEAFCSVNGPQ 301
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK
structural genomix research consortium, NYSGXRC, H
PSI-2; 2.06A {Thermotoga maritima}
Length = 396
Score = 60.1 bits (145), Expect = 6e-10
Identities = 79/474 (16%), Positives = 136/474 (28%), Gaps = 122/474 (25%)
Query: 51 RIVT-PKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDD 109
+ G V + G + + + P ++VD + PG +D H+H+
Sbjct: 13 TVFPITSRPFKGDVLVSNGKVEKVGENIEDP----DAEIVDLTGKFLFPGFVDAHSHI-- 66
Query: 110 PGRTEWEGFPSGT--------------------------KAAAAGGITTLIDMPLNSDPS 143
G E + + A AGG+T+++ +P +++P
Sbjct: 67 -GLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPV 125
Query: 144 TISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIN 203
+K + E+ I V GL G + +
Sbjct: 126 GGQGSVIKFRSIIVEECI---VKDPAGLKM-------------AFGENPKRVYGERKQTP 169
Query: 204 DFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPS 263
M A I++ + + Y + + ++G E + + R +
Sbjct: 170 STRMGTAGVIRDYFTKVKNYMKKKELA--QKEGKEFTETDLKMEVGEMVLRKKIPARMHA 227
Query: 264 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY 323
I + +A++ G +L I H ++A +L E K
Sbjct: 228 HRADDILTAIRIAEEF-------GFNLVIEHGTEAYKISKVLAEKKIP------------ 268
Query: 324 LAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGN 383
P R K KL + G + L DH E +
Sbjct: 269 ----VVVGPLLTFRTKLELKDLTMETIAKLLKD---GVLIALMCDHPVIPLEFATVQAAT 321
Query: 384 FLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSK-GAIAIGNHAD 442
+ +YG E L + PAK+ G + G+I G AD
Sbjct: 322 AM---------------------RYGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDAD 360
Query: 443 LVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHA 496
LVVW + HP MK V G V++ H
Sbjct: 361 LVVW---------SGHPFDMKS-------------VVERVYIDGVEVFRREGHH 392
>2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N-
acetyleglucosamine-6-phosphate, carbohydrate metabolism,
hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis}
Length = 396
Score = 59.6 bits (145), Expect = 1e-09
Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 43 NQYWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLI 101
+ IVT VI G V I +G I ++ +E P+ + ++ ++V++PG+I
Sbjct: 3 ESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTER--PKEPYSKEIQAPADSVLLPGMI 60
Query: 102 DVHAH------LDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIS 146
D+H H D + + G T+ + +TI+
Sbjct: 61 DIHIHGGYGADTMDA---SFSTLDIMSSRLPEEGTTSFL-------ATTIT 101
Score = 35.7 bits (83), Expect = 0.029
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 28/84 (33%)
Query: 409 GVTLEQLASWWSERPAKLAG-QVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 467
+ +A+ SE AK G KG++ +G ADLV+ + +D
Sbjct: 333 NCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVI--------VSSDC--------- 375
Query: 468 SAYLGRRLSGKVLATISRGNLVYK 491
+V+ TI RGN+ +
Sbjct: 376 ----------EVILTICRGNIAFI 389
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 54.6 bits (132), Expect = 3e-08
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 40 LPYNQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIM 97
L + + SK + + +I + I+ G I I N+K V+ + +++
Sbjct: 3 LTSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIG-----KINTKDATVISIPDLILI 57
Query: 98 PGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
PGL+D H H+ +D E S G TT+ ++
Sbjct: 58 PGLMDSHVHIVGNDSKGEESIADSSHMGTVWGVVNAEKTLMAGFTTVRNV 107
>2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.31A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A*
Length = 426
Score = 54.7 bits (132), Expect = 3e-08
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 40 LPYNQYWLTSKRIVTPKG--VISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVI 96
+ + + ++ P ++ G + I++G I + + N V+D I
Sbjct: 1 MSLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSN---AHVIDVKGKTI 57
Query: 97 MPGLIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
MPGLID+H H+ + P+ A G TT+ D
Sbjct: 58 MPGLIDLHVHVVAIEFNLPRVATLPNVLVTLRAVPIMRAMLRRGFTTVRDA 108
>3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio
initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP}
Length = 427
Score = 53.4 bits (129), Expect = 7e-08
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 26/116 (22%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAH 106
+ I+TP+ +I + I +I + E+ + V ++++PG + H H
Sbjct: 4 IKPFAILTPQTIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLH 63
Query: 107 L---------DDPGRTEW--------EG-FPS----GTKAAAA----GGITTLIDM 136
L W E P + + G T + +
Sbjct: 64 LEFSANKATLQYGDFIPWLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAI 119
>1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase;
1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6
c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A
1m7j_A
Length = 496
Score = 53.5 bits (128), Expect = 9e-08
Identities = 72/520 (13%), Positives = 132/520 (25%), Gaps = 145/520 (27%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPS 120
V ++ I ++ + +D V+ PG ID H H D
Sbjct: 41 ADVGVRGDRIAAVGDLSASS----ARRRIDVAGKVVSPGFIDSHTHDD--NYLLKHR--- 91
Query: 121 GTKAAAAGGITTLID------------------MPLNSDPSTISTETLKLKVDAAEKRIY 162
+ G+TT++ + L + + ++A
Sbjct: 92 DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPP 151
Query: 163 VDVGFWGGLVPENAYNASA-------------------LEALLNAGVLGLKSFMCPSGIN 203
+V + A+ + L +G +G +G
Sbjct: 152 A--VNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIG-----ISTGAF 204
Query: 204 DFPMTNASH--IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRP 261
P +AS I E L + H E
Sbjct: 205 YPPAAHASTEEIIEVCRPLITHGGVYATHMRDE--------------------------- 237
Query: 262 PSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSS--------LDLLMEAKTNGD 313
A+ E + ++ + I H L L+ A + D
Sbjct: 238 GEHIVQALEETFRIGREL-------DVPVVISHHKVMGKLNFGRSKETLALIEAAMASQD 290
Query: 314 SITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDG------HIDMLSS 367
++++ P Y+A S D E L + +
Sbjct: 291 -VSLDAYP-YVAGSTMLKQDRVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVP 348
Query: 368 DHSPTVPELKLLDEGNFLKAWG---------GISSLQFVLPVTWS--------YGRKYGV 410
+ P ++DE + + G+ + P W Y R G+
Sbjct: 349 ELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLPHDERPHPRLWGTFPRVLGHYSRDLGL 408
Query: 411 -TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE-----AEFELDNDHPVHMKH 464
LE + A G +G + G +ADLVV++P A FE + +
Sbjct: 409 FPLETAVWKMTGLTAAKFGLAERGQVQPGYYADLVVFDPATVADSATFEHPTERAAGIHS 468
Query: 465 PSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAACGSPI 504
G V+++ + G +
Sbjct: 469 -----------------VYVNGAAVWEDQSFTGQHAGRVL 491
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 53.2 bits (128), Expect = 1e-07
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 28/116 (24%)
Query: 46 WLTSKRIVTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
LT + T G G V + + + ++ R + AVI P ++
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDE-LRRQYPHAAEERAGAVIAPPPVNA 98
Query: 104 HAHLD-------------------DPGRTEWEGFPSGTKAAAA----GGITTLIDM 136
H HLD GR + +A A G + D+
Sbjct: 99 HTHLDMSAYEFQALPYFQWIPEVVIRGRHLRG--VAAAQAGADTLTRLGAGGVGDI 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-07
Identities = 73/470 (15%), Positives = 136/470 (28%), Gaps = 153/470 (32%)
Query: 15 TLLAASLFLLVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVI--------------S 60
T +A V + + +WL K +P+ V+ +
Sbjct: 164 TWVALD----VCLSYKVQCK-----MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE-WEGFP 119
+ + I S + R + Y + L+ L + + W F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCL----LV-----LLNVQNAKAWNAFN 263
Query: 120 SGTK----------AAAAGGITT----LIDMP---------------LNSDPSTISTETL 150
K TT L L+ P + E L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 151 K-----LKVDAAEKRIYVDV-GFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND 204
L + A R + W N L ++ + + L+ P+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLE----PAEYRK 373
Query: 205 -------FPMTNASHIKEG-LSVL---ARYKRPLLVHAEMEKGS--ERHVKLEDDTLDTR 251
FP ++HI LS++ ++V ++ K S E+ K ++
Sbjct: 374 MFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--- 428
Query: 252 SYSTYLKTRPPSWEEAAI-RELL-------TVAKDTRTDGPAEG-AHLHIV-HLSDASSS 301
S YL+ + E A+ R ++ T D + + HI HL +
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 302 ----------LDL-LMEAKTNGDSI----------TVETCPHYLAFSAEEIPDGDTRFKC 340
LD +E K DS T++ Y + I D D ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDPKY-- 541
Query: 341 APPIRDAANKEKLWEALMD-----GHIDMLSSDHSPTVPELKLLDEGNFL 385
E+L A++D +++ S ++ + + L+ E +
Sbjct: 542 ----------ERLVNAILDFLPKIEE-NLICSKYTDLL-RIALMAEDEAI 579
Score = 39.8 bits (92), Expect = 0.002
Identities = 46/343 (13%), Positives = 95/343 (27%), Gaps = 90/343 (26%)
Query: 135 DMPLNSDPSTISTETLK--LKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLG 192
DMP S +S E + + A FW LL+
Sbjct: 40 DMPK----SILSKEEIDHIIMSKDAVSGTLRL--FW---------------TLLSKQEEM 78
Query: 193 LKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRS 252
++ F+ + N + + ++P + E+ +L +D +
Sbjct: 79 VQKFV-----EEVLRINYKFLMSPIK--TEQRQPSM---MTRMYIEQRDRLYNDN---QV 125
Query: 253 YSTYLKTRPPSWEE--AAIREL--------------------LTVAKDTRT-DGPAEGAH 289
++ Y +R + + A+ EL L V +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 290 -LHIVHLSDASSSLDLLMEAKTNGDSITVETCPHY--LAFSAEEIPDGDTRFKCAPP--- 343
L++ + + + L++L + D H + I R + P
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 344 ----IRDAANKEKLWEALMDGHIDML--SSDHSPTVPELKLLDEGNFLKAWGGISSLQFV 397
+ + N K W A + +L + T +FL ++ +
Sbjct: 246 CLLVLLNVQNA-KAWNA-FNLSCKILLTTRFKQVT----------DFLS--AATTTHISL 291
Query: 398 LPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKG---AIAI 437
+ + L + RP L +V ++I
Sbjct: 292 DHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural
genomics, protein structure initiative, PSI; 2.63A
{Unidentified} PDB: 3lwy_A* 3n2c_A*
Length = 423
Score = 52.7 bits (127), Expect = 1e-07
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 43 NQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPG 99
L ++ + + V I I+ + N Q +D +MPG
Sbjct: 4 TITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPN---AQAIDVRGKTVMPG 60
Query: 100 LIDVHAHL--DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
ID H H+ + P+ A + G T++ D
Sbjct: 61 FIDCHVHVLASNANLGVNATQPNILAAIRSLPILDAMLSRGFTSVRDA 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 1e-07
Identities = 57/357 (15%), Positives = 110/357 (30%), Gaps = 113/357 (31%)
Query: 11 LPTLTLLAASLFLLVFKDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVISGAVEIKEGNI 70
P + ++ + +++ K + E L Y + T +G+++
Sbjct: 238 CPLIGVIQLAHYVVTAK-LLGFTPGE--LRSYLK-GAT----GHSQGLVTAVA------- 282
Query: 71 ISIV-SEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG 129
I+ S E + + + +A+ + I V + P + PS + +
Sbjct: 283 IAETDSWESFFVSVR--------KAITVLFFIGVRCYEAYPNTSLP---PSILEDSLENN 331
Query: 130 ITTLIDMPLNSDPST------ISTETLKLKVDA------AEKRIYVDVGFWGGLVPENAY 177
PS ++ E ++ V+ A K++ + LV N
Sbjct: 332 EGV---------PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI------SLV--NGA 374
Query: 178 N-------ASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIK----------EGLSVL 220
+L L L L+ PSG++ S I L V
Sbjct: 375 KNLVVSGPPQSLYGL----NLTLRKAKAPSGLD------QSRIPFSERKLKFSNRFLPVA 424
Query: 221 ARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTR 280
+ + LLV A + +D L S+ I+ + V DT
Sbjct: 425 SPFHSHLLVPAS-------DLINKD-----------LVKNNVSFNAKDIQ--IPV-YDTF 463
Query: 281 TDGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTR 337
G+ L ++ S + +D ++ ++ T H L F P G +
Sbjct: 464 D-----GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG----PGGASG 511
Score = 41.2 bits (96), Expect = 0.001
Identities = 67/383 (17%), Positives = 110/383 (28%), Gaps = 150/383 (39%)
Query: 225 RPL-LVHAEMEKGSERHVKLEDDTLDTRSYSTY--LKTRPPSWEEAAIRELLTVAKDTRT 281
RPL L H GS HV L + T S+ L+ + A D
Sbjct: 7 RPLTLSH-----GSLEHVLL----VPTASFFIASQLQEQFNKILPEPTEGF---AAD--- 51
Query: 282 DGPAEGAHL------HIVHLSDAS--SSLDLLMEAKTN--------GDSITVETCPHYLA 325
D P A L ++ L + S D ++ G+ I H A
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI------H--A 103
Query: 326 FSAEEIPDGDTRFKCAPPI-------RDAANKE-------KLWEALMDGH---------- 361
+A+ + + DT + R A + L+ A+ +G+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 362 --------------------IDMLSSDHSPTVPEL--------KLLDEGNFLKAW----G 389
+ L + T+ EL K+ +G + W
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 390 GISSLQFVL--PVTWSYGRKYGVTLEQLASW------WSERPAKLAGQVSKGAIAIGNHA 441
++L P++ + + QLA + P +L + GA
Sbjct: 224 NTPDKDYLLSIPISCP-----LIGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHS--Q 275
Query: 442 DLVV---------WEPEAEFELDNDHPVHMKHPSISAYLGRR---------LSGKVLATI 483
LV WE F + K ++ ++G R L +L
Sbjct: 276 GLVTAVAIAETDSWE---SF-FVSVR----KAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 484 SRGNLVYKEGNHAPAACGSPILA 506
N EG P SP+L+
Sbjct: 328 LENN----EG--VP----SPMLS 340
Score = 38.1 bits (88), Expect = 0.007
Identities = 46/286 (16%), Positives = 90/286 (31%), Gaps = 96/286 (33%)
Query: 91 YGEAV--IM---PGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGG--ITTLIDMPLNSDPS 143
YG ++ I+ P + +H + G+ E + + G T I +N +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEK-GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 144 TIS----TETLKLK------VDAAEKRIYVDVGFWGGLVPENAYNA-------SALEALL 186
+ + L + EK + D+ G L+P +A A +AL +L
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-LIPADATFAGHSLGEYAALASL- 1773
Query: 187 NAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDD 246
A V+ S + + V+ + R + + + +
Sbjct: 1774 -ADVM---SI-----------------ESLVEVV--FYRGMTMQVAVPRDELGR------ 1804
Query: 247 TLDTRSYSTY--LKTRP----PSWEEAAIRELL-TVAKDTRTDGPAE------------- 286
S Y + P S+ + A++ ++ V K RT E
Sbjct: 1805 -------SNYGMIAINPGRVAASFSQEALQYVVERVGK--RTGWLVEIVNYNVENQQYVA 1855
Query: 287 -GAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEI 331
G + L ++ L+ + K I + + S EE+
Sbjct: 1856 AG---DLRALDTVTNVLNFIKLQK-----IDIIELQK--SLSLEEV 1891
Score = 32.7 bits (74), Expect = 0.38
Identities = 18/139 (12%), Positives = 37/139 (26%), Gaps = 29/139 (20%)
Query: 259 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDA-SSSLDLLMEAKTNGD--SI 315
TRP + ++ +L V P + L + + L E D +
Sbjct: 6 TRPLTLSHGSLEHVLLV--------PT-ASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 316 TVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSD--HS--- 370
E +L + + + + L L + L + H+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKV----------GQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 371 --PTVPELKLLDEGNFLKA 387
+ L+ +K
Sbjct: 107 KLLQENDTTLVKTKELIKN 125
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 52.2 bits (126), Expect = 2e-07
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 32/122 (26%)
Query: 47 LTSKRIVT--PKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
+ + +V P V+ AV + G I++++ D + V +A +MPGL++
Sbjct: 18 IEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVN 77
Query: 103 VHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----GGITTLI 134
H H DD W E GT A A GG T +
Sbjct: 78 AHTHNPMTLLRGVADDLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVN 137
Query: 135 DM 136
+
Sbjct: 138 EN 139
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 52.0 bits (125), Expect = 2e-07
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 33/127 (25%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------DDP- 110
G + + +G I + E ++ + +I+PG ID H HL +
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYGEQL 95
Query: 111 -----GRT--EWEGFPS------GTKAAAA----GGITTLIDMPLNSDPSTISTETLKLK 153
E + G K G TT ++ S +
Sbjct: 96 LPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAF------TSSSPVATEEL 149
Query: 154 VDAAEKR 160
+ A +R
Sbjct: 150 FEEASRR 156
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure
initiative, PSI-2, NYSGXRC, structural genomics; 2.33A
{Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Length = 418
Score = 51.2 bits (123), Expect = 4e-07
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 43 NQYWLTSKRIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGL 100
++ + + +++ K V S + +GNIIS + + ++ +D + ++PGL
Sbjct: 7 SKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGL 65
Query: 101 IDVHAHL---DDPGRTEWEGFPSGTKAAAA---------GGITTLIDM 136
+D+H H +A A G TT+ +
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQV 113
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase;
1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Length = 480
Score = 51.1 bits (122), Expect = 4e-07
Identities = 84/451 (18%), Positives = 139/451 (30%), Gaps = 83/451 (18%)
Query: 51 RIVTPKGV--ISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
I+ G + +++G I +I P D ++ PG IDVH H D
Sbjct: 15 WIIDGTGAPRRRADLGVRDGRIAAIGELGAHP----ARHAWDASGKIVAPGFIDVHGHDD 70
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDM-----------------PLNSDPSTISTETLK 151
+ + + GITT++ L T +
Sbjct: 71 LMFVEKPDLRWK-----TSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVP 125
Query: 152 LKVDAAEKR-IYVDVGFWGGLVPENAYNASA-------------------LEALLNAGVL 191
A + + ++V LV +A L+A L AG +
Sbjct: 126 AYFAALDAQRPMINVAA---LVGHANLRLAAMRDPQAAPTAAEQQAMQDMLQAALEAGAV 182
Query: 192 GLKSFMCPSGINDFPMTNAS--HIKEGLSVLARYKRPLLVHAEMEKGS-----ERHVKLE 244
G + + P A ++ V A +R H E E + +
Sbjct: 183 GFSTGLAY-----QPGAVAQAAELEGLARVAAERRRLHTSHIRNEADGVEAAVEEVLAIG 237
Query: 245 DDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLSDASSSLDL 304
T S + P +W R L R G ++ SS L
Sbjct: 238 RGTGCATVVSHHKCMMPQNWGR--SRATLANIDRAREQGVEVALDIY----PYPGSSTIL 291
Query: 305 LMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHID- 363
+ E D I + + S E + D R+ C AA + A+ +
Sbjct: 292 IPERAETIDDIRITWSTPHPECSGEYLADIAARWGCDKT--TAARRLAPAGAIYFAMDED 349
Query: 364 ----MLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV-TLEQLASW 418
+ + D + WG S VL Y R+ + TLEQ +
Sbjct: 350 EVKRIFQHPCCMVGSDGLPNDARPHPRLWG---SFTRVLG---RYVREARLMTLEQAVAR 403
Query: 419 WSERPAKLAGQVSKGAIAIGNHADLVVWEPE 449
+ PA++ G +G + G AD+VV++P+
Sbjct: 404 MTALPARVFGFAERGVLQPGAWADVVVFDPD 434
>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate
derivative of L- arginine, hydrolase; HET: KCX M3R;
1.70A {Caulobacter crescentus CB15} PDB: 3mtw_A*
Length = 403
Score = 50.4 bits (121), Expect = 7e-07
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---DDPGRTEWEG 117
V + +G I SI + D VD ++PGLID+H HL + G
Sbjct: 23 PLVIVTDGRITSIGKKGDAV--PAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLE 80
Query: 118 FPSGTKAAAA---------GGITTLIDM 136
+ + G TT+ ++
Sbjct: 81 YSDRFWSVVQTANAKKTLEAGFTTVRNV 108
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 49.8 bits (119), Expect = 1e-06
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 51 RIVTPK------GVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDV 103
T + G++ A+ + EG I ++V +D D ++ PGLID
Sbjct: 13 TPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKG-PYPAHWQDMKGKLVTPGLIDC 71
Query: 104 HAHLDDPGRTEWE------GFPSGTKAAAAGGITTLI 134
H HL G E G P A GGI + +
Sbjct: 72 HTHLIFAGSRAEEFELRQKGVPYAEIARKGGGIISTV 108
Score = 33.3 bits (76), Expect = 0.21
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 16/63 (25%)
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 492
G + +G AD +VW + HP +S +G +++ + G
Sbjct: 365 GQLRVGMLADFLVW--------NCGHPAE-----LSYLIGVDQ---LVSRVVNGEETLHG 408
Query: 493 GNH 495
H
Sbjct: 409 EGH 411
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 48.8 bits (116), Expect = 2e-06
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 29 SAKLSHSECSLLPYNQYWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTG- 86
+ + + L N T + G + + ++ G I E D P + T
Sbjct: 7 AKGTATGNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTAD 66
Query: 87 QVVDYGEAVIMPGLIDVHAHLDDPGRTEWE------GFPSGTKAAAAGGITTLID 135
+ D G I P LID H HL G E G A A GGI + +
Sbjct: 67 ETTDCGGRWITPALIDCHTHLVFGGNRAMEFEMRLNGATYEEIAKAGGGIVSSVR 121
Score = 28.3 bits (63), Expect = 6.6
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLV 489
G + G AD +W D + P + +G + A I +G V
Sbjct: 377 GTLEAGKSADFAIW--------DIERPAE-----LVYRIGFNP---LHARIFKGQKV 417
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group.,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacillus thuringiensis
serovarkonkukian}
Length = 81
Score = 44.4 bits (106), Expect = 2e-06
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 62 AVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
A+ I +G I ++ +E ++ + +D +PGL D H H+
Sbjct: 25 AIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHV 70
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 48.6 bits (116), Expect = 3e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
V I E I+ + + +++D ++ PGL+D H HL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAG-YEADEIIDCSGRLVTPGLVDPHTHL 83
Score = 30.1 bits (68), Expect = 2.1
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAY-LGRRLSGKVLATISRGNLVYK 491
G + G ADLV+W + +++ Y G V + G +V
Sbjct: 372 GQLKAGRSADLVIW--------QAPNYMYI------PYHYGVNH---VHQVMKNGTIVVN 414
>2p9b_A Possible prolidase; protein structure initiative II, PSI-2,
amidohydrolase, structural genomics; 1.70A
{Bifidobacterium longum NCC2705} SCOP: b.92.1.10
c.1.9.17
Length = 458
Score = 48.6 bits (116), Expect = 3e-06
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTE 114
+ + I V+ +D ++MPGLI+ H HL G+
Sbjct: 34 MTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPL 87
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 48.3 bits (116), Expect = 4e-06
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 33/122 (27%)
Query: 47 LTSKRIVT--PKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
L IV P GV+ A+ I++G I + E R+ T ++ + ++ PGL++
Sbjct: 12 LLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGAT-EIRELPGMLLAPGLVN 70
Query: 103 VHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----GGITTLI 134
H H DD W + GT+ A A GGIT
Sbjct: 71 AHGHSAMSLFRGLADDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFS 130
Query: 135 DM 136
DM
Sbjct: 131 DM 132
>1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics,
TM0814, JCSG, PSI, protein structure initiative; 2.50A
{Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10
Length = 376
Score = 48.0 bits (115), Expect = 4e-06
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 19/80 (23%)
Query: 28 DSAKLSHSECSLLPYNQYWLTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTG 86
S K+ H ++ + IV P G VEI+EG I+ + E
Sbjct: 2 GSDKIHHHHHHMI------VEKVLIVDPIDGEFTGDVEIEEGKIVKVEKREC-------- 47
Query: 87 QVVDYGEAVIMPGLIDVHAH 106
V+MPG +D H H
Sbjct: 48 ----IPRGVLMPGFVDPHIH 63
Score = 39.1 bits (92), Expect = 0.002
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 409 GVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSIS 468
G ++ +LA S G +G IA G ADLV+ LD D
Sbjct: 319 GCSITELAKVSSYNSCVELGLDDRGRIAEGTRADLVL--------LDEDL---------- 360
Query: 469 AYLGRRLSGKVLATISRGNLVYK 491
V+ TI G +V++
Sbjct: 361 ---------NVVMTIKEGEVVFR 374
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 47.9 bits (115), Expect = 4e-06
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 33/122 (27%)
Query: 47 LTSKRIVT--PKGVI--SGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLID 102
++++ I+T G + + A+ I++G I +I+ D + + ++ + V+MPGLI+
Sbjct: 10 ISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGL-EADERLELPDHVLMPGLIN 68
Query: 103 VHAHL---------DDPGRTEW---------------EGFPSGTKAAAA----GGITTLI 134
+H H DD +W + G+ A GG TT+
Sbjct: 69 LHGHSAMSLLRGLADDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTIN 128
Query: 135 DM 136
DM
Sbjct: 129 DM 130
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 48.5 bits (115), Expect = 4e-06
Identities = 34/163 (20%), Positives = 57/163 (34%), Gaps = 19/163 (11%)
Query: 51 RIVTPKG--VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD 108
+V + + I I S+ QV+D G A + PGLID H H++
Sbjct: 43 TLVDVVTGELRPADIGIVGALIASVHEPASRRDA---AQVIDAGGAYVSPGLIDTHMHIE 99
Query: 109 DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFW 168
T + A A G+TT++ P + + ++ A E +
Sbjct: 100 SSMIT-PAAY---AAAVVARGVTTIVWDPH-EFGNVHGVDGVRWAAKAIENLPLRAILLA 154
Query: 169 GGLVPENAY--------NASALEALLNAG-VLGLKSFMCPSGI 202
VP +A+ L LL+ + G+ M G+
Sbjct: 155 PSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGV 197
Score = 31.2 bits (70), Expect = 1.00
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 407 KYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFE 453
+YG+ E + A+ G+ G IA G AD+VV+E F
Sbjct: 314 RYGLKPEWALRAATLNAAQRLGRSDLGLIAAGRRADIVVFEDLNGFS 360
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 47.6 bits (114), Expect = 5e-06
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL 107
+ + +G I S+ + P K ++D+ +I+PG+ D+HAH
Sbjct: 32 SYIVVIDGKIASV--SSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHA 76
>2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide
isopropylaminohydrolase ATZC, structural genomics,
NYSGXRC, target 9364B; 2.24A {Pseudomonas SP}
Length = 403
Score = 47.2 bits (112), Expect = 7e-06
Identities = 67/459 (14%), Positives = 121/459 (26%), Gaps = 88/459 (19%)
Query: 51 RIVTPKGVISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLD-- 108
+ V + I II I ++ + +D ++ PG +D H H+D
Sbjct: 13 YLSEKDSVYD--IGIVGDRIIKIEAKIEGT----VKDEIDAKGNLVSPGFVDAHTHMDKS 66
Query: 109 ---DPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK-----R 160
R T+ AA I + N+ I ++ R
Sbjct: 67 FTSTGERLPKFWSRPYTRDAA---IEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTR 123
Query: 161 IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS-FMCPSGINDFPMTNASHIKEGLSV 219
+VDV A + E ++ ++ SG + S I++ L +
Sbjct: 124 THVDVDSVAKTKAVEAVLEAKEEL---KDLIDIQVVAFAQSGFFVDLES-ESLIRKSLDM 179
Query: 220 LARYKRPLLVHAEMEKGSERHVKLEDDTLDT-RSYSTYLKTRPPSWEEAAIRELLTVAKD 278
+ E E + D + Y + + + +A+
Sbjct: 180 GCDLVGGVDPAT-RENNVEGSL---DLCFKLAKEYDVDIDYHIHDIGTVGVYSINRLAQK 235
Query: 279 TRT---DGPAEGAHLHIVHLSDASSSLDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGD 335
T G +H + + + + K +G ++ +
Sbjct: 236 TIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSSTPPTMPVIKLLEAG 295
Query: 336 TRFKCAPP-IRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 394
CA IRD W +G DM+ A L
Sbjct: 296 INLGCASDNIRDF------WVPFGNG--DMVQ-------------------GALIETQRL 328
Query: 395 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 454
+ L + + A++ G I +G ADLVV +
Sbjct: 329 ELKTN----------RDLGLIWKMITSEGARVLGIEKNYGIEVGKKADLVVLNSLSPQWA 378
Query: 455 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 493
D K L I G ++ K+
Sbjct: 379 IIDQA------------------KRLCVIKNGRIIVKDE 399
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 46.1 bits (110), Expect = 2e-05
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 34/141 (24%)
Query: 28 DSAKLSHSECSLLPYNQYWLT---SKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNS 83
+ L + + + + ++ + IK+G I++I + +
Sbjct: 14 QRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPA 73
Query: 84 KTGQVVDYGEAVIMPGLIDVHAHL---------DDPGRTEW---------------EGFP 119
+ +D G+ V+MPG ++ H H DD W
Sbjct: 74 T--ETLDLGQQVLMPGWVNAHGHAAMSLFRGLADDLPLMTWLQEHVWPAEAQHVDEHFVK 131
Query: 120 SGTKAAAA----GGITTLIDM 136
GT+ A A G TT DM
Sbjct: 132 QGTELAIAEMIQSGTTTFADM 152
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 45.6 bits (109), Expect = 2e-05
Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 34/106 (32%)
Query: 58 VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL---------D 108
GAVEI+ G I ++ E +D ++MP L + H H +
Sbjct: 16 PFWGAVEIENGTIKRVLQGEV-------KVDLDLSGKLVMPALFNTHTHAPMTLLRGVAE 68
Query: 109 DPGRTEW--------------EGFPSGTKAAAA----GGITTLIDM 136
D EW + GT A GI +DM
Sbjct: 69 DLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDM 114
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 45.3 bits (108), Expect = 4e-05
Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 46/167 (27%)
Query: 61 GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHL-----------DD 109
+ I I+++ + + +D + +PGLI+ H HL +
Sbjct: 23 ADILIDGPKIVAVGKDLSDRS---VSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLER 79
Query: 110 PGRTEW--------EGFPS-----------GTKAAAA----GGITTLIDMPLNSDPSTIS 146
W G+ +A GGITT+ D P +
Sbjct: 80 VTMASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQ-HLFFPGATA 138
Query: 147 TETLKLKVDAAEK--------RIYVDVGFWGGLVPENAYNASALEAL 185
+ ++AA R + +G G ++ + +
Sbjct: 139 DSYIDATIEAATDLGIRFHAARSSMTLGKSEGGFCDDLFVEPVDRVV 185
>3h4u_A Amidohydrolase; signature of Zn ligands, structural genomics,
NYSGXRC, target 9236E, PSI-2, protein structure
initiative; 2.20A {Unidentified} PDB: 3hpa_A
Length = 479
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 35/140 (25%)
Query: 27 KDSAKLSHSECSLLPYNQYWLTSKRIVTPKGVI--SGAVEIKEGNIISIVSEEDWPRNSK 84
+ S +LL + L + + + I++ I+++ + P
Sbjct: 19 RAPNTSSSRPKTLLVKHADVLVT---MDDTRRELRDAGLYIEDNRIVAVGPSAELPE--T 73
Query: 85 TGQVVDYGEAVIMPGLIDVHAHL-----------DDPGRTEW-------------EGFPS 120
+V+D +++PGL++ H H+ + W E
Sbjct: 74 ADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEV 133
Query: 121 GTKAAAA----GGITTLIDM 136
T A A G TT D
Sbjct: 134 STLTAMAELLQSGCTTSSDH 153
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structur initiative; HET:
KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Length = 534
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 13 TLTLLAASLFLLVFKDSAKLSHSECSLLPYNQYW----LTSKRIVT--PKGVISGAVEIK 66
+L L S F S + + + + L + I T + I
Sbjct: 2 SLASLPISNFFTFNHQSTLFTKVKNFMGVKHIGDCMKALINGTIYTSFSPVKKVSGLVIS 61
Query: 67 EGNIISIVSEEDWPRNSKTG--QVVDYGEAVIMPGLIDVHAHLDDPGRT 113
++ R ++ +++D +MP D H HLD+ G +
Sbjct: 62 NERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMS 110
Score = 31.5 bits (72), Expect = 0.81
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 20/71 (28%)
Query: 423 PAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLAT 482
A++ G + G A+ ++ + + E+ + T
Sbjct: 474 SAQVTLAEDLGKLERGFRAEYIILDRDPLKEMKGI--------------------ITITT 513
Query: 483 ISRGNLVYKEG 493
+ V K
Sbjct: 514 DPNSSSVDKLA 524
>1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation
change, D314G mutant, hydrolase; 1.12A {Escherichia
coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A
1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A
3g77_A
Length = 430
Score = 43.0 bits (101), Expect = 2e-04
Identities = 50/416 (12%), Positives = 116/416 (27%), Gaps = 64/416 (15%)
Query: 63 VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHAHLDDPGRTEWEGFPSGT 122
+ +++G I +I ++ T +D + +++P ++ H HLD
Sbjct: 26 IHLQDGKISAIDAQSGVM--PITENSLDAEQGLVIPPFVEPHIHLD-------------- 69
Query: 123 KAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEKRIYVDVGFWGGLVPENAYNASAL 182
AG L + L D ++R L
Sbjct: 70 TTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRA-----------------WQTL 112
Query: 183 EALLNAGVLGLKSF--MCPSGINDFPMTNA----SHIKEGLSVLARYKRPLLVHAEMEKG 236
+ + G+ +++ + + + L ++A + +L + E
Sbjct: 113 KWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEAL 172
Query: 237 SERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHLS 296
E ++L D + + + + ++ + +A+ +H +
Sbjct: 173 LEEALRLGADVVGAIPHFEF----TREYGVESLHKTFALAQKYDR-----LIDVHCDEID 223
Query: 297 DASSS----LDLLMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDAANKEK 352
D S + L + G +T +++ K + I AN
Sbjct: 224 DEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMS-GINFVANP-L 281
Query: 353 LWEALMDGHIDMLSSDHSPTVPELK------LLDEGNFLKAWGGISSLQFVLPVTWSYGR 406
+ L V E+ W + + + +
Sbjct: 282 VNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDGVFDPWYPLGTANMLQVLHMGLHV 341
Query: 407 KYGVTLEQLASWW---SERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHP 459
+ Q+ + A+ + IA GN A+L++ E F+
Sbjct: 342 CQLMGYGQINDGLNLITHHSARTLN-LQDYGIAAGNSANLIILPAENGFDALRRQV 396
>2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II,
amidohydrolase, sargasso SEA, enviro sample, structural
genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9
Length = 492
Score = 42.7 bits (101), Expect = 2e-04
Identities = 24/131 (18%), Positives = 35/131 (26%), Gaps = 36/131 (27%)
Query: 38 SLLPYNQYWLTSKRIVTPKG---VISGAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEA 94
S L N + + T V + I I +I + P +VD +
Sbjct: 11 STLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRP----GETIVDATDC 66
Query: 95 VIMPGLIDVHAHL-----------DDPGRTEW--------------EGFPSGTKAAAA-- 127
VI P ++ H HL D T W F +
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIEL 126
Query: 128 --GGITTLIDM 136
G T+ D
Sbjct: 127 ARSGCATVADH 137
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 39.9 bits (93), Expect = 0.002
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 32/165 (19%)
Query: 47 LTSKRIVTPKGVISGAVEIKEGNIISIVS----------EEDWPRNSKTGQVVDYGEAVI 96
+T+ I+ G+I + IK+G I SI + + T +V+ ++
Sbjct: 341 ITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANT-EVIAGEGLIV 399
Query: 97 MPGLIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTET------L 150
G ID H H P A + GITTL+ T +T +
Sbjct: 400 TAGAIDCHVHYICPQLVY---------EAISSGITTLVGGGTGPAAGTRATTCTPSPTQM 450
Query: 151 KLKVDAAEKRIYVDVGFWG-GLVPENAYNASALEALLNAGVLGLK 194
+L + + + + ++ GF G G ++ L ++ AG +GLK
Sbjct: 451 RLMLQSTD-DLPLNFGFTGKG----SSSKPDELHEIIKAGAMGLK 490
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 38.8 bits (91), Expect = 0.003
Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 39/122 (31%)
Query: 47 LTSKRIVTPKGVIS-GAVEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
+ +++ + P G + I G I SI + D ++V++ G+ ++H+
Sbjct: 14 IHARQALLPDGWAENVRIGIAGGVICSIETGVL-------AGPDDERQSVVVAGMANLHS 66
Query: 106 HL---------DDPGRTEWEGFP------------------SGTKAAAA----GGITTLI 134
H + G + + + G T +
Sbjct: 67 HAFQYGMAGLAERRGPSADSFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVG 126
Query: 135 DM 136
+
Sbjct: 127 EF 128
Score = 28.0 bits (63), Expect = 7.4
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 14/66 (21%)
Query: 433 GAIAIGNHADLVVWEPEAEFELDNDHPVHM-KHPSISA--YLGRRLSGKVLATISRGNLV 489
+ G AD V D + H + + GR V RG
Sbjct: 385 DGLKKGASADFVSL--------DVERLPHAKGDVVLDGWIFAGR---AHVCDVWVRGVKQ 433
Query: 490 YKEGNH 495
+ G H
Sbjct: 434 VEGGRH 439
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 37.3 bits (87), Expect = 0.010
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 61 GAVEIKEGNIISIVSEEDWPR------NSKTGQVVDYGE-AVIMPGLIDVHAHL 107
+ + + I + E K ++ + MPGL+D H H
Sbjct: 54 HLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHA 107
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 34.6 bits (80), Expect = 0.086
Identities = 14/122 (11%), Positives = 34/122 (27%), Gaps = 38/122 (31%)
Query: 47 LTSKRIVTPKGVISGA-VEIKEGNIISIVSEEDWPRNSKTGQVVDYGEAVIMPGLIDVHA 105
+ ++R + P+G EI +++ + + + ++PG+ ++H+
Sbjct: 4 IFAERALLPEGWARNVRFEISADGVLAEIRPDANA------DGAERLGGAVLPGMPNLHS 57
Query: 106 HL---------DDPGRT-----EW-------------EGFPSGTKAAAA----GGITTLI 134
H + G W E G T +
Sbjct: 58 HAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVA 117
Query: 135 DM 136
+
Sbjct: 118 EF 119
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule
biogenesis/degradation, manganese, hydrolase,
exopolysaccharide synthesis; 1.90A {Streptococcus
pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Length = 247
Score = 31.5 bits (71), Expect = 0.57
Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 99 GLIDVHAHL----DDPGRTEWEGFPSGTKAAAAGGITTLIDMP------LNSDPSTISTE 148
G+ID+H+H+ DD G E + + G+ T++ + I+
Sbjct: 4 GMIDIHSHIVFDVDD-GPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAEN 62
Query: 149 TLKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGL--KSFMCPSGINDFP 206
L+++ A E + + + G E Y L+ L + L + + +F
Sbjct: 63 FLQVREIAKEVASDLVIAY-GA---EIYYTPDVLDKLEKKRIPTLNDSRYA----LIEFS 114
Query: 207 MTNA-SHIKEGL-SVLARYKRPLLVHAEMEKGSERHVKL 243
M I L +L P++ H E E + K
Sbjct: 115 MNTPYRDIHSALSKILMLGITPVIAHIERYDALENNEKR 153
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735),
structural genomics, J center for structural genomics,
JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Length = 323
Score = 30.5 bits (68), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 39 LLPYNQYWLTSKRIVTPKGVISGAVEIK 66
+P + Y L S RI PKG I VE++
Sbjct: 84 PMPASYYTLASDRIAIPKGQIMAGVEVQ 111
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 30.1 bits (68), Expect = 1.6
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 8/85 (9%)
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTISTETLKLKVDAAEK 159
+ID H H+ P + G+ I + P T +K + +
Sbjct: 4 IIDGHTHVILPVEKHIKIM-------DEAGVDKTILFSTSIHPETAVN-LRDVKKEMKKL 55
Query: 160 RIYVDVGFWGGLVPENAYNASALEA 184
V+ +
Sbjct: 56 NDVVNGKTNSMIDVRRNSIKELTNV 80
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 30.2 bits (68), Expect = 1.9
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 317 VETCPHYLAFSAEEIPDGDTRFKCAPPIRD---AANKEKLWEALMDGHIDMLSSDHSPTV 373
+ L DG+ P+R A +KL + L + ++ H V
Sbjct: 79 DKVDGPKLRREFL-HEDGEIYVPEKDPVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKV 137
Query: 374 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASW 418
E +L FL G ++ + ++G YG A++
Sbjct: 138 HEDLMLPFDEFLALNGCEAARDLWINPFTAFG--YGHFDNVPAAY 180
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 30.0 bits (68), Expect = 1.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 91 YGEAVIMPGLIDVHAHLDDP 110
G + ID+ A+L D
Sbjct: 19 PGSMSMAQQFIDIGANLTDD 38
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 29.4 bits (67), Expect = 2.6
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 100 LIDVHAHLDDPGRTEW-EGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDA 156
L+D H HLD + AAA + + ++T + D
Sbjct: 3 LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCL---------AVATTLPSYLHMRDL 53
Query: 157 AEKR--IYVDVGFWGGLV-PENAYNASALEALLN 187
+R + G V P N + +E L
Sbjct: 54 VGERDNVVFSCG-----VHPLNQNDPYDVEDLRR 82
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 29.0 bits (66), Expect = 3.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 97 MPGLIDVHAHLDDP 110
+ ID H H D P
Sbjct: 2 ICRFIDTHCHFDFP 15
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 5.5
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 346 DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVT--WS 403
+ KE + E +++ D P + ++ F G + +
Sbjct: 916 NPEKKEMIQEVIVEE-------DLEPFEASKETAEQ--FKHQHGDKVDIFEIPETGEYSV 966
Query: 404 YGRKYGVTLEQLASWWSERPAKLAGQVSKG 433
K G TL +AGQ+ G
Sbjct: 967 KLLK-GATL--YIPKALRFDRLVAGQIPTG 993
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 99 GLIDVHAHLDDP 110
GL+D H HL P
Sbjct: 5 GLVDCHCHLSAP 16
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 28.4 bits (64), Expect = 6.0
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 154 VDAAEKRI----YVDVGFWGGLVPENAYNASALEALLN-------AGV-LGLKSFMCPSG 201
VD EN +A + + G + +K + +G
Sbjct: 44 VDQLYADEATPPTTSREHAVPSASENPLSAWYVTTSIPPTSDGVLTGRRVAIKDNVTVAG 103
Query: 202 INDFPMTNASHIKEG 216
+ PM N S EG
Sbjct: 104 V---PMMNGSRTVEG 115
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel,
lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A*
2dvx_A* 3s4t_A*
Length = 327
Score = 28.2 bits (63), Expect = 6.8
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 97 MPGLIDVHAHLDDPG-RTEWEGFPSG 121
M G + + H P + GF G
Sbjct: 1 MQGKVALEEHFAIPETLQDSAGFVPG 26
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 27.9 bits (63), Expect = 6.9
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAA 157
++D HAHL + + + I ++ + E K +D +
Sbjct: 13 MVDTHAHLHFH--QFDDDRNAVISSFEENNIEFVV---------NVGVNLEDSKKSLDLS 61
Query: 158 EKR--IYVDVG 166
+ I+ VG
Sbjct: 62 KTSDRIFCSVG 72
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 28.0 bits (63), Expect = 7.4
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 100 LIDVHAHLDDP 110
ID+ +L DP
Sbjct: 3 FIDIGINLTDP 13
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 27.9 bits (63), Expect = 8.1
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLIDMPLNSDPSTIST--ETLKLKVDAA 157
LID H HL+D + A G+ + + T++ +
Sbjct: 2 LIDTHVHLNDEQ--YDDDLSEVITRAREAGVDRMF---------VVGFNKSTIERAMKLI 50
Query: 158 EKR--IYVDVG 166
++ +Y +G
Sbjct: 51 DEYDFLYGIIG 61
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 27.7 bits (62), Expect = 8.9
Identities = 7/35 (20%), Positives = 10/35 (28%), Gaps = 7/35 (20%)
Query: 100 LIDVHAHLDDPGRTEWEGFPSGTKAAAAGGITTLI 134
D H H + G +E GI +
Sbjct: 2 YFDSHLHSEGLGFSELV-------KLKENGIKEVC 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,954,372
Number of extensions: 498845
Number of successful extensions: 1528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1329
Number of HSP's successfully gapped: 120
Length of query: 507
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 409
Effective length of database: 3,965,535
Effective search space: 1621903815
Effective search space used: 1621903815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)