BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010548
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
+ AD +L ++ +++ +S W+PEL+ VPI++ G KLDLR D A
Sbjct: 78 RGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGA 137
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
+ V G +++ +ECS+ + V VF A + VL P
Sbjct: 138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C+ G GK+ LL S+ F +Y PT + ++ NVV
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV 50
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-----NATSLE 137
AD VL ++ +++ + W+PELRR VPI++ G KLDLR D + +
Sbjct: 81 ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVIT 140
Query: 138 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
G +++ +ECS+ T V VF A K VL P
Sbjct: 141 STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+C+ G GK+ +L + F +Y PT + ++ NV
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV 50
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
+ AD +L ++ +++ ++ W+PELR VPII+ G KLDLR D A
Sbjct: 76 RGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
+ G +++ +ECS+ T V VF A K VL P
Sbjct: 136 VPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C+ G GK+ +L S+ F +Y PT + ++ NVV
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV 48
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 81 KRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDH-------NA 133
+ AD +L ++ +++ + WLPEL+ +PI++ G KLDLR D A
Sbjct: 76 RGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGA 135
Query: 134 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHP 178
S+ G +++ +ECS+ T V VF A + L P
Sbjct: 136 ASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C+ G GK+ +L S+ F +Y PT + ++ NVV
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV 48
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 49 RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
RL P YP V T + ++GK + AD ++ ++ ++ + + W PE
Sbjct: 68 RLRPLSYPQTVGETY---GKDITSRGK---DKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS--LEEVMGPI-----MQQFREIETC--VECSAT 159
+R PII+ G KLDLR D + E+ + PI + +EI +ECSA
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 160 TMIQVPDVFYYAQKAVLHP 178
T + VF A +AVL P
Sbjct: 182 TQRGLKTVFDEAIRAVLCP 200
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 80 QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI++ +ECSA T + VF A +AVL P
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 51
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 342 FLTAPESPWDEA---PYKDAAE-----TTALGNLTLKG--FVSKWALMTLLDPRHSLANL 391
FL PE+ D A +DA + T L N T G F + + L + D + +
Sbjct: 61 FLQGPET--DRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 392 IYVGYGG-----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLER 446
I V G D A V + + + + +C++ G GK+ LL S+
Sbjct: 119 IGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
Query: 447 PFSENYAPTTGEQYAVNVV 465
F Y PT + Y+ NV+
Sbjct: 179 AFPGEYIPTVFDNYSANVM 197
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 342 FLTAPESPWDEA---PYKDAAE-----TTALGNLTLKG--FVSKWALMTLLDPRHSLANL 391
FL PE+ D A +DA + T L N T G F + + L + D + +
Sbjct: 61 FLQGPET--DRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 392 IYVGYGG-----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLER 446
I V G D A V + + + + +C++ G GK+ LL S+
Sbjct: 119 IGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
Query: 447 PFSENYAPTTGEQYAVNVV 465
F Y PT + Y+ NV+
Sbjct: 179 AFPGEYIPTVFDNYSANVM 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 225
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 286 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 342 FLTAPESPWDEA---PYKDAAE-----TTALGNLTLKG--FVSKWALMTLLDPRHSLANL 391
FL PE+ D A +DA + T L N T G F + + L + D + +
Sbjct: 61 FLQGPET--DRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 392 IYVGYGG-----DPAAALRVTRKRSVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLER 446
I V G D A V + + + + +C++ G GK+ LL S+
Sbjct: 119 IGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTN 178
Query: 447 PFSENYAPTTGEQYAVNVV 465
F Y PT + Y+ NV+
Sbjct: 179 AFPGEYIPTVFDNYSANVM 197
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI++ +ECSA T + VF A +AVL P
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 82 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 141
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 142 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
D +++ ++ + +L + W PE++ VPII+ G K DLR D H A L ++
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQE 137
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
G M +ECSA T V +VF A +A L
Sbjct: 138 PVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 140
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 141 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 135
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVL 176
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 136 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 139
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 140 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 137
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 138 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 73
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSLEE 138
D +++ ++ + +L + W PE++ VPII+ G K DLR D + A +E
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 138
Query: 139 VMGPIMQQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
+ P ++ R++ + ECSA T V +VF A +A L
Sbjct: 139 PVKP--EEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 81 QTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI++ +ECSA T + VF A +AVL
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 76 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 47
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 78 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 138 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 49
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 52/137 (37%), Gaps = 34/137 (24%)
Query: 49 RLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPE 108
RL P FYPD A ++L + ++ + + W PE
Sbjct: 97 RLRPLFYPD-------------------------ASVLLLCFDVTSPNSFDNIFNRWYPE 131
Query: 109 LRRLEIKVPIIVAGCKLDLRGDHNATS------LEEVM---GPIMQQFREIETCVECSAT 159
+ KVPIIV GCK DLR D + + LE V G M + +ECSA
Sbjct: 132 VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
Query: 160 TMIQVPDVFYYAQKAVL 176
V VF A + L
Sbjct: 192 LHDNVHAVFQEAAEVAL 208
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ +L G GK++LL F + F E+Y PT E+Y VN+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 75
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 9/106 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
+ PI + +EI +ECSA T + VF A +AVL P
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 100
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++L+ A + PE VP V + R+ +++ DTS S +
Sbjct: 41 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
DAV++ + ++ TL + W E++ +++ GCK DLR D H T
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
+ G M + T +ECSA + V D+F+ A A ++
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
+ ++ G GK+ALL+ F + F ENY PT E Y +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 68
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 25 KSSLIAAAATESVP-EKVPPVHAPTRLPPDFYPDRVPVTI-IDTSSSLENKGKLNE-ELK 81
K+ L+ + T + P E +P V + D PV + + ++ LE+ +L
Sbjct: 19 KTCLLISYTTNAFPGEYIPTVF--DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP 76
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 77 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 137 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 48
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++L+ A + PE VP V + R+ +++ DTS S +
Sbjct: 20 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
DAV++ + ++ TL + W E++ +++ GCK DLR D H T
Sbjct: 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
+ G M + T +ECSA + V D+F+ A A ++
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
++ G GK+ALL+ F + F ENY PT E Y +
Sbjct: 11 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 47
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
D +++ ++ + +L + W PE++ VPII+ G K DLR D H L ++
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
P+ ++ R++ + ECSA T V +VF A +A L
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEVM-- 140
D +++ ++ + +L + W+PE++ VPII+ K DLR D H T L +
Sbjct: 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE 157
Query: 141 ------GPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
G M + +ECSA T V +VF A +A L
Sbjct: 158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++L+ A + PE VP V + R+ +++ DTS S +
Sbjct: 36 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 95
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD---------HNAT 134
DAV++ + ++ TL + W E++ +++ GCK DLR D H T
Sbjct: 96 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT 155
Query: 135 SLEEVMGPIMQQFREIETCVECSA-TTMIQVPDVFYYAQKAVLH 177
+ G M + T +ECSA + V D+F+ A A ++
Sbjct: 156 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 199
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVN 463
+ ++ G GK+ALL+ F + F ENY PT E Y +
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 63
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PI++ G KLDLR D + ++
Sbjct: 75 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + REI + +ECSA T + VF A +AVL
Sbjct: 135 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 72
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 161 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ Y PT + Y+ NV+
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM 72
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 81 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 141 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM 52
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PI++ G KLDLR D + ++
Sbjct: 75 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + REI + +ECSA T + VF A +AVL
Sbjct: 135 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 46
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 84 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 143
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 144 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ FS Y PT + Y+ NV+
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM 55
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 93 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 152
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + +EI +ECSA T + VF A +AVL
Sbjct: 153 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
Q +C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 17 QGTMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 64
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PI++ G KLDLR D + ++
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAVL 176
+ PI + REI + +ECSA T + VF A +AVL
Sbjct: 134 LAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-M 140
D +++ ++ + +L + W PE++ VPII+ G K DLR D H L ++
Sbjct: 77 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQ 136
Query: 141 GPIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
P+ ++ R++ + ECSA T V +VF A +A L
Sbjct: 137 EPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 180
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD-HNATSLEEV-MG 141
D +++ ++ + +L + W PE++ VPII+ G K DLR D H L ++
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQE 157
Query: 142 PIM-QQFREIETCV------ECSATTMIQVPDVFYYAQKAVLH 177
P+ ++ R++ + ECSA T V +VF A +A L
Sbjct: 158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 40 KVPPVHAPTRLPPDFYPD------RVPVTIIDTSSSLENKGKLNE-ELKRADAVVLTYAC 92
+ P V+ PT ++ D RV + + DT+ E+ +L ++ V++ ++
Sbjct: 34 QFPEVYVPTVFE-NYVADVEVDGRRVELALWDTAGQ-EDYDRLRPLSYPDSNVVLICFSI 91
Query: 93 NQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL--EEVMGPIMQQFRE- 149
+ +L + W+ E+ VPII+ GCK+DLR D +E P+ Q +
Sbjct: 92 DLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQS 151
Query: 150 ------IETCVECSATTMIQVPDVFYYAQKAVL 176
ECSA T V +VF A +A L
Sbjct: 152 VADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 24/171 (14%)
Query: 25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPVT-------IIDTSSSLENKGKLN 77
K+ L+ + A ++ PE+ + PT D Y V V + DT+ E+ +L
Sbjct: 31 KTCLLMSYANDAFPEE----YVPTVF--DHYAVSVTVGGKQYLLGLYDTAGQ-EDYDRLR 83
Query: 78 E-ELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSL 136
D ++ ++ ++ + W+PEL+ VP ++ G ++DLR D +
Sbjct: 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLAR 143
Query: 137 EEVM--GPIMQQ-----FREIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
M PI + +EI C VECSA T + VF A A+L P
Sbjct: 144 LNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
+ +C++ G GK+ LL S+ F E Y PT + YAV+V
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 59
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATS--LEEV 139
+ D ++ ++ ++ + + W PE+R PII+ G KLDLR D + E+
Sbjct: 74 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 140 MGPI-----MQQFREIETC--VECSATTMIQVPDVFYYAQKAV 175
+ PI + +EI +ECSA T + VF A +AV
Sbjct: 134 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+C++ G GK+ LL S+ F Y PT + Y+ NV+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM 45
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
+D V+L +A N +++ +S+ W PE++ ++ G K+DLR D + ++
Sbjct: 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 154
Query: 143 IMQQFREIETCVECSATTMIQVPDVF 168
+ Q+ + +E S+ I + +VF
Sbjct: 155 LCQKLGCVAY-IEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 83 ADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEVMGP 142
+D V+L +A N +++ +S+ W PE++ ++ G K+DLR D + ++
Sbjct: 94 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDD 153
Query: 143 IMQQFREIETCVECSATTMIQVPDVF 168
+ Q+ + +E S+ I + +VF
Sbjct: 154 LCQKLGCVAY-IEASSVAKIGLNEVF 178
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 66 ERFRTITSS 74
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 66 ERFRTITSS 74
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 68 ERFRTITSS 76
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 69 ERFRTITSS 77
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 69 ERFRTITSS 77
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 85 ERFRTITSS 93
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E F ++ T G ++ VV+ G K I +
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 483 EGVKKI 488
E + +
Sbjct: 85 ERFRSV 90
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 93 ERFRTITSS 101
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GKS LL F + ++E+Y T G + + ++ G K I +
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 76 ERFRTITSS 84
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 81 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 138
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 139 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 189
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 62
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 77 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 134
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 135 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 185
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+ +C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 58
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 84 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 141
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 142 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 192
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 65
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 81 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 138
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 139 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 189
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 62
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXI--GGEPYTLGL 55
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 76 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 133
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHPTAP 181
PI + R+++ VECSA T + +VF A A L P P
Sbjct: 134 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 184
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+ +C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 57
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ LL G GK+ LL F + ++E+Y T G + + ++ G K I +
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 483 EGVKKILSN 491
E + I S+
Sbjct: 76 ERFRTITSS 84
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 77 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 136
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 137 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 185
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 419 TERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+ +C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 58
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 78 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 138 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 186
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 59
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 75 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 134
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 135 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 183
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 56
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L++
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGLRD 57
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHN-----ATSL 136
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D + A +
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 137 EEVMGP-----IMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAP 181
++ + P + + + ++ VECSA T + +VF A A L P P
Sbjct: 134 QKPITPETAEKLARDLKAVKY-VECSALTQKGLKNVFDEAILAALEPPEP 182
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++ + LL G GKS LL F+E F+ ++ T G + + VD G K I
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILS 490
+E + I +
Sbjct: 62 QERFRTITT 70
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E+ F ++ T G ++ +++ G K I +
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 483 EGVKKI 488
E + +
Sbjct: 71 ERFRSV 76
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VP 117
V + I DT+ + + A +L Y + T + L++ WL + R L + +
Sbjct: 60 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIV 118
Query: 118 IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
II+ G K DL D T LE + +ET SA T V + F + +L+
Sbjct: 119 IILCGNKKDLDADREVTFLEASRFAQENELMFLET----SALTGEDVEEAFVQCARKILN 174
Query: 178 P 178
Sbjct: 175 K 175
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E+ F ++ T G ++ +++ G K I +
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 483 EGVKKI 488
E + +
Sbjct: 70 ERFRSV 75
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VP 117
V + I DT+ + + A +L Y + T + L++ WL + R L + +
Sbjct: 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIV 117
Query: 118 IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
II+ G K DL D T LE Q E+ +E SA T V + F + +L+
Sbjct: 118 IILCGNKKDLDADREVTFLE---ASRFAQENEL-MFLETSALTGENVEEAFVQCARKILN 173
Query: 178 P 178
Sbjct: 174 K 174
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ L+ G GKS LL+ F+E+ F ++ T G ++ +++ G K + LQ
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG---KYVKLQIWDT 64
Query: 483 EGVKKILS 490
G+++ S
Sbjct: 65 AGLERFRS 72
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 59 VPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEIK-VP 117
V + I DT+ + + A +L Y + T + L++ WL + R L + +
Sbjct: 57 VKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLASQNIV 115
Query: 118 IIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLH 177
II+ G K DL D T LE + +ET SA T V + F + +L+
Sbjct: 116 IILCGNKKDLDADREVTFLEASRFAQENELMFLET----SALTGEDVEEAFVQCARKILN 171
Query: 178 P 178
Sbjct: 172 K 172
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNA---------T 134
D +L ++ S+ +S W+PE+R K PII+ G + DLR D
Sbjct: 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK 152
Query: 135 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVF 168
+ E ++ + + + +ECSA T + +VF
Sbjct: 153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIP 481
++ + LL G GKS LL F+E F+ ++ T G + + VD G K I
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 482 EEGVKKILS 490
+E + I +
Sbjct: 62 QERFRTITT 70
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE 178
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLHP 178
PI + R+++ VECSA T + +VF A A L P
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVL 176
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 57
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 76 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 133
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 134 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 180
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y PT + YAV V+ GG TL L
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMI--GGEPYTLGL 59
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 78 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 135
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 136 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 182
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
++ + LL G GKS LL F+E F+ ++ T G + + VD G
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 53
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
++ + LL G GKS LL F+E F+ ++ T G + + VD G
Sbjct: 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KV 116
++ + I DT+ + + A ++ Y ++ST + LSS WL + R L
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNT 121
Query: 117 PIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
II+ G K DL + T E +QF E +E SA T V D F A K
Sbjct: 122 VIILIGNKADLEAQRDVTYEE------AKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175
Query: 175 V 175
+
Sbjct: 176 I 176
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G GKS LL+ F E+ F + T G ++ +++ G K I +
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 483 EGVKKI 488
E + +
Sbjct: 75 ERFRAV 80
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 58 RVPVTIIDTSSSLENKGKLNEELKRADAVVLTYACNQQSTLSRLSSYWLPELRRLEI-KV 116
++ + I DT+ + + A ++ Y ++ST + LSS WL + R L
Sbjct: 78 KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLTNPNT 136
Query: 117 PIIVAGCKLDLRGDHNATSLEEVMGPIMQQFREIETC--VECSATTMIQVPDVFYYAQKA 174
II+ G K DL + T E +QF E +E SA T V D F A K
Sbjct: 137 VIILIGNKADLEAQRDVTYEEA------KQFAEENGLLFLEASAKTGENVEDAFLEAAKK 190
Query: 175 V 175
+
Sbjct: 191 I 191
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
+F+ ++ G GKS LL+ F E+ F + T G ++ +++ G
Sbjct: 30 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 76
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPG 469
++ + LL G GKS LL F+E F+ ++ T G + + VD G
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 49
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 422 NVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
N +R +FG GKS+L+ F++ F E+Y PT + Y
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEG 484
+ LL G GKS LL F + ++E+Y T G + + ++ G K I +E
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 485 VKKILSN 491
+ I S+
Sbjct: 61 FRTITSS 67
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ F Y P + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 420 ERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQE 479
++N+ + ++ G GK++L++ ++ +S+ Y T G + V G K +Q
Sbjct: 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG--DKVATMQV 62
Query: 480 IPEEGVKKILSNKEAL-ASCDVTIFVYD 506
G ++ S A D + VYD
Sbjct: 63 WDTAGQERFQSLGVAFYRGADCCVLVYD 90
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 418 QTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
Q+ + + ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 2 QSSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 49
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 411 SVDRKKQQTERNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ ++ K Q + + ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 2 AANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 56
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 427 LLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEEGVK 486
LL G GKS LL F + ++E+Y T G + + ++ G K I +E +
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 487 KILSN 491
I S+
Sbjct: 62 TITSS 66
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 45
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLIL 477
+C++ G GK+ LL S+ Y PT + YAV V+ GG TL L
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMI--GGEPYTLGL 55
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 82 RADAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGDHNATSLEEV-- 139
+ D ++ ++ S+ + W+PE+ K P ++ G ++DLR D +++E++
Sbjct: 74 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD--PSTIEKLAK 131
Query: 140 --MGPIMQQF-----REIETC--VECSATTMIQVPDVFYYAQKAVLH 177
PI + R+++ VECSA T + +VF A A L
Sbjct: 132 NKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 46
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 48
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 60
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
+ ++ G GKSAL F+ F E+Y PT + Y VV
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV 48
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G N GK+ L F F + T G + VD G K + +
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
E +K + + + +FVYD
Sbjct: 80 ERFRKSMV-QHYYRNVHAVVFVYD 102
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 421 RNVFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNK 472
R + CLL G GKS+++ F++ F N +PT G + V P GN+
Sbjct: 22 RELKVCLL-GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV--PCGNE 70
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ ++ G N GK+ L F F + T G + VD G K + +
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
E +K + + + +FVYD
Sbjct: 89 ERFRKSMV-QHYYRNVHAVVFVYD 111
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
VF+ +L G GK+ LL+ F FS + T G +++ V
Sbjct: 10 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV 52
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPT-----------TGEQYAVNVVDQPGGNKK 473
+ + G ++ GKS+L F+E F ++Y PT G++Y + +VD G ++
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 474 TL 475
++
Sbjct: 63 SI 64
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
VF+ +L G GK+ LL+ F FS + T G +++ V
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV 67
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPT-----------TGEQYAVNVVDQPGGNKK 473
+ + G ++ GKS+L F+E F ++Y PT G++Y + +VD G ++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 474 TLILQ 478
++ Q
Sbjct: 68 SIFPQ 72
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYA 461
+ ++ G + GK++L + F+E FSE Y PT Y+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS 62
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
L+ E + + FGL+D D DG + EL + + ++P +E +E A GN T+
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI 63
Query: 370 K 370
+
Sbjct: 64 E 64
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPT-----------TGEQYAVNVVDQPGGNKK 473
+ + G ++ GKS+L F+E F ++Y PT G++Y + +VD G ++
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 474 TLILQ 478
++ Q
Sbjct: 68 SIFPQ 72
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPE 482
+F+ +L G + GK+ ++ F FSE T G + + ++ G K I +
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 483 EGVKKILSNKEALASCDVTIFVYD 506
E + I + S + I YD
Sbjct: 89 ERFRTI--TQSYYRSANGAILAYD 110
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
L+ E + + FGL+D D DG + EL + + ++P +E +E A GN T+
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI 63
Query: 370 K 370
+
Sbjct: 64 E 64
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 32.0 bits (71), Expect = 0.93, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 310 LASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAAETTALGNLTL 369
L+ E + + FGL+D D DG + EL + + ++P +E +E A GN T+
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMISEVDADGNGTI 63
Query: 370 K 370
+
Sbjct: 64 E 64
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 423 VFRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ + ++ G GK++L+N ++ + FS Y T G +
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLI 476
CLL G GKS+++ F+E F N PT G + V K LI
Sbjct: 10 CLL-GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 59
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 426 CLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
CLL G GKS+++ F+E F N PT G + V K LI +E
Sbjct: 9 CLL-GDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
+ ++ G +GK++L F + F + Y T G + + + PG TL + +I +
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 484 GVKKILSNKEALASCDVTIFVYD 506
+ + +K + V + VYD
Sbjct: 67 TIGGKMLDKYIYGAQGV-LLVYD 88
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 8 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 63
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 64 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 93
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 393 YVGYGGDPAAALRVTRKRSVD--RKKQQTERNVFRCLLFGPQNAGKSALLNSFLER---- 446
+VG+ PAA T+++ ++ K +Q + N L+ G GKS+ +NS +
Sbjct: 7 WVGFQQFPAA----TQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR 62
Query: 447 --PF-SENYAPT----TGEQYAVNVVDQPG 469
PF +E P T + +N++D PG
Sbjct: 63 VSPFQAEGLRPVMVSRTMGGFTINIIDTPG 92
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVVDQPGGNKKTLILQEIPEE 483
+ ++ G + GK++L+ F + F E T G + + V+ G + I +E
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 484 GVKKILSNKEALASCDVTIFVYD 506
I S S I VYD
Sbjct: 87 RFNSITS--AYYRSAKGIILVYD 107
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
++ ++ G + GKSAL ++ F + Y PT + Y VV
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
++ ++ G GKSAL F++ F E Y PT + Y
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY 42
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
++ ++ G GKSAL ++ F + Y PT + Y VV
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 46
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
++ ++ G GKSAL ++ F + Y PT + Y VV
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 46
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
++ ++ G GKSAL ++ F + Y PT + Y VV
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 34 TESVPEKVPPVHAPTRLPPDFYPDRVPVTIIDTSSSLEN-KGKLNEELKRADAVVL 88
+S+ ++ V A R+ D YPD + + + LE K KL EELK+ADA +L
Sbjct: 185 VDSLRRELIEVLAEIRVELD-YPDEIETNTGEVVTRLERIKEKLTEELKKADAGIL 239
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++++ A + PE VP V + RV +++ DTS S +
Sbjct: 40 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
DAV+L + ++ T+ W E+ +++ GCK DLR D
Sbjct: 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 25 KSSLIAAAATESVPEKVPPVHAPTRLPPDFYPDRVPV-------TIIDTSSSLENKGKLN 77
KS+L T + EK P DFY + V I+DT+ + + +
Sbjct: 16 KSALTVQFVTGTFIEKYDPT------IEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD 69
Query: 78 EELKRADAVVLTYACNQQSTLSRLSSY--WLPELRRLEIKVPIIVAGCKLDL 127
+K +L Y+ Q + + + ++R E KVP+I+ G K+DL
Sbjct: 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE-KVPVILVGNKVDL 120
>pdb|1QGU|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QGU|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae,
Dithionite-Reduced State
pdb|1QH8|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH8|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae, As-
Crystallized (Mixed Oxidation) State
pdb|1QH1|B Chain B, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1QH1|D Chain D, Nitrogenase Mofe Protein From Klebsiella Pneumoniae,
Phenosafranin Oxidized State
pdb|1H1L|B Chain B, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
pdb|1H1L|D Chain D, Nitrogenase Mo-Fe Protein From Klebsiella Pneumoniae, Nifv
Mutant
Length = 519
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 230 LQPAEIVGVKRVVQEKQHDGVND----LGLT-----------LSGFLFLHALFIEKGRL- 273
LQP +++ K+VVQE + + LGL LSG AL +E+GRL
Sbjct: 289 LQPWQLLKSKKVVQEMWNQPATEVAIPLGLAATDELLMTVSQLSGKPIADALTLERGRLV 348
Query: 274 -----ETTWAVLRKFG-YGD 287
TW +KFG YGD
Sbjct: 349 DMMLDSHTWLHGKKFGLYGD 368
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 PT-EAELQDMINEVDADGNGTI 364
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 PT-EAELQDMINEVDADGNGTI 364
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++++ A + PE VP V + RV +++ DTS S +
Sbjct: 23 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 82
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
DAV+L + ++ T+ W E+ +++ GCK DLR D
Sbjct: 83 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 116 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 150
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 285 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 344
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 345 PT-EAELQDMINEVDADGNGTI 365
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 425 RCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQY 460
+ +L G GKS+++ F+ F+EN PT G +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF 40
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 PT-EAELQDMINEVDADGNGTI 364
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
++ ++ G GKSAL F++ F E Y PT + Y V
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV 44
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 80 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 114
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 25 KSSLIAAAATESVPEK-VPPVHAPTRLPPDFYPDRVPVTIIDTSSSLENKGKLNEELKRA 83
K++++ A + PE VP V + RV +++ DTS S +
Sbjct: 24 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 83
Query: 84 DAVVLTYACNQQSTLSRLSSYWLPELRRLEIKVPIIVAGCKLDLRGD 130
DAV+L + ++ T+ W E+ +++ GCK DLR D
Sbjct: 84 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 284 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 343
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 344 P-TEAELQDMINEVDADGNGTI 364
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 83 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 117
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
++ ++ G GKSAL F++ F E Y PT + Y V
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV 44
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 307 SVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDL 341
S+ L E LR F LYDI+ DG + E+ D+
Sbjct: 80 SILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDI 114
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 LELRDDFLPVPTKLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPES 348
++ ++D + KL + +L E + + F L+D D DG + EL + + ++
Sbjct: 247 IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 306
Query: 349 PWDEAPYKDA-AETTALGNLTL 369
P EA +D E A GN T+
Sbjct: 307 PT-EAELQDMINEVDADGNGTI 327
>pdb|1IZL|A Chain A, Crystal Structure Of Photosystem Ii
pdb|1IZL|J Chain J, Crystal Structure Of Photosystem Ii
Length = 360
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 221 FQVKCFNAPLQPAEIVGVKRVVQEKQHD-GVNDLGLTLSGFLFLHALFIEKGRLETTWA- 278
FQ FN + RVV G++ + L+GF F H++ KG + TWA
Sbjct: 260 FQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWAD 319
Query: 279 VLRKFGYGDDLELRDDFLPVPTKLSPDQSVELA 311
++ + G ++ + P L+ +S +A
Sbjct: 320 IINRANLGMEVMHERNAHNFPLDLASAESAPVA 352
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
++ ++ G GKSAL ++ F + Y PT + Y VV
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNVV 465
++ ++ G GKSAL ++ F + Y PT + Y VV
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV 45
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 312 SEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDE 352
++ E +R F ++D D DG + PAEL + + E DE
Sbjct: 79 TDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDE 119
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 316 EFLRGIFGLYDIDNDGAVRPAELEDL 341
E LR F LYD+DNDG + E+ D+
Sbjct: 99 EKLRWAFKLYDLDNDGYITRNEMLDI 124
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 20/102 (19%)
Query: 390 NLIYVGYGGDPAAALRVTRKRSVDRKKQQTERNVFR--------CLLFGPQNAGKSALLN 441
+L ++ + G PA V K ++D+KK + R+V C+LF +L+
Sbjct: 884 SLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLF---------ILD 934
Query: 442 SFLERPFSENYAPTTGE--QYAVNVVDQPGGNKKTLILQEIP 481
++ A TTGE + V PG +T++L IP
Sbjct: 935 EMRKKSLKGERA-TTGEGLDWGVLFGFGPGLTIETVVLHSIP 975
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 309 ELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDAA-ETTALGNL 367
EL E + + F L+D D DG + EL + + ++P EA +D E A GN
Sbjct: 3 ELTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNG 61
Query: 368 TL 369
T+
Sbjct: 62 TI 63
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 423 VFRCLLFGPQNAGKSALLNSFL--ERPFSENYAPTTGE---------QYAVNVVDQPGGN 471
V + L G N GKS+L+N+ L ER N A TT + Q +VD G
Sbjct: 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254
Query: 472 KKTLILQEIPEEGVKKILSNKEALASCDVTIFVYD 506
KK + + + V + L +A+ +V V D
Sbjct: 255 KKGKVYETTEKYSVLRAL---KAIDRSEVVAVVLD 286
>pdb|3A0B|A Chain A, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|AA Chain a, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|A Chain A, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|AA Chain a, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 344
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 221 FQVKCFNAPLQPAEIVGVKRVVQEKQHD-GVNDLGLTLSGFLFLHALFIEKGRLETTWA 278
FQ FN + RVV G++ + L+GF F H++ KG + TWA
Sbjct: 260 FQYASFNNSRSLHFFLAAWRVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWA 318
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 301 KLSPDQSVELASEAVEFLRGIFGLYDIDNDGAVRPAELEDLFLTAPESPWDEAPYKDA-A 359
KL + +L E + + F L+D D DG + EL + + ++P EA +D
Sbjct: 262 KLEYNSRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-EAELQDMIN 320
Query: 360 ETTALGNLTL 369
E A GN T+
Sbjct: 321 EVDADGNGTI 330
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 424 FRCLLFGPQNAGKSALLNSFLERPFSENYAPTTGEQYAVNV 464
++ ++ G GKSAL F++ F + Y PT + Y V
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,392,085
Number of Sequences: 62578
Number of extensions: 601440
Number of successful extensions: 2083
Number of sequences better than 100.0: 229
Number of HSP's better than 100.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1705
Number of HSP's gapped (non-prelim): 329
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)